HHsearch results for GI: 254780799 and protein with PDBid: 3cuq_B
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, alternative splicing, coiled coil, cytoplasm, nucleus, protein transport; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=100.00 E-value=0 Score=381.87 Aligned_cols=194 Identities=12% Similarity=0.070 Sum_probs=176.1
Q ss_pred EEHHHHHHH--HHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCC---CHHHCCC
Q ss_conf 763446888--87321005889999998664142379999657775355435541102515876458664---2123388
Q gi|254780799|r 594 VVIDEMADL--MMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKID---SRTILGE 668 (806)
Q Consensus 594 viiDElaDl--mm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~d---Srtild~ 668 (806)
.++|||||| ||+++||+|.+|+||||||||+|||++.|||||++||+||+||||+|||++|+|+|++| ||+|+|.
T Consensus 5 ~i~~a~~DL~~lM~~ake~~~l~~~la~~~r~~~~~~~~~~~~~~~~~~t~lg~~~~~tr~~f~~~~~~~~eLsr~I~d~ 84 (218)
T 3cuq_B 5 NISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKSYLLSMGIANPVTRETYGSGTQYHMQLAKQLAGI 84 (218)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHGGGCC----------CCSHHHHHHHHHHTCCCHHHHTTSSCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHH
T ss_conf 79999997999999999999999999999884379875000226899998608777663776545207649999999999
Q ss_pred CCHHHHCCCCCEEEECCCC-CEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 6457865887547736898-325888334898899999999971289742110012455666778888877770389999
Q gi|254780799|r 669 QGAEQLLGQGDMLYMTGGG-RVQRIHGPFVSDIEVEKVVSHLKTQGEAKYIDIKDKILLNEEMRFSENSSVADDLYKQAV 747 (806)
Q Consensus 669 ~gae~Llg~gdml~~~~~~-~~~r~~g~~v~~~ev~~v~~~~~~q~~~~y~~~~~~~~~~~~~~~~~~~~~~d~l~~~a~ 747 (806)
.||++++|.|||+|.+.+. .+.|.|++|||++||.++|++|+.|+.|.|+..+..... .......+.|++|++|+
T Consensus 85 ~~a~~~~~gG~m~l~~~~~~~nr~r~~~lVS~~di~~av~~l~~lg~~~~l~~~~sg~~----~~~s~~~~~d~~~~~~l 160 (218)
T 3cuq_B 85 LQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFDSGVM----VIELQSHKEEEMVASAL 160 (218)
T ss_dssp HHHHHHHTTSEEEHHHHHHHHHHTCSSSCCCHHHHHHHHHTTTTTTCSEEEEECTTSBE----EEEETTCCGGGGHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC----CCCCCCCCHHHHHHHHH
T ss_conf 97898568980673555342233367886799999999999996399827763035543----44678720588999999
Q ss_pred HHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCC
Q ss_conf 99996598500014222001177899999999977986802278
Q gi|254780799|r 748 DIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASST 791 (806)
Q Consensus 748 ~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g~ 791 (806)
+++.+.+++|+|+|||+|+||||||+|+||+||++|+|.--++.
T Consensus 161 ~~v~~~~~~S~s~Lqr~l~i~~~rA~~~Ld~le~~Giv~~D~~~ 204 (218)
T 3cuq_B 161 ETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDDSV 204 (218)
T ss_dssp HHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEESS
T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 99987799489999999796999999999999978938987787