Query gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 806
No_of_seqs 311 out of 1864
Neff 8.3
Searched_HMMs 23785
Date Mon May 30 13:24:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780799.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iut_A DNA translocase FTSK; n 100.0 0 0 1479.0 37.6 504 292-804 53-566 (574)
2 2ius_A DNA translocase FTSK; n 100.0 0 0 1435.3 37.1 491 305-803 19-512 (512)
3 3cuq_B Vacuolar protein-sortin 100.0 0 0 381.9 -3.7 194 594-791 5-204 (218)
4 2ve8_A FTSK, DNA translocase F 99.9 3.3E-25 1.4E-29 206.8 4.7 71 733-803 2-72 (73)
5 1e9r_A Conjugal transfer prote 99.0 2.4E-08 1E-12 80.5 13.7 63 590-658 279-347 (437)
6 1q57_A DNA primase/helicase; d 96.9 0.0024 1E-07 43.1 6.7 145 456-636 244-407 (503)
7 1cr0_A DNA primase/helicase; R 96.5 0.044 1.9E-06 33.6 10.8 42 593-634 150-196 (296)
8 3bgw_A DNAB-like replicative h 96.4 0.01 4.2E-07 38.4 7.0 139 457-635 200-360 (444)
9 2qby_A CDC6 homolog 1, cell di 96.2 0.079 3.3E-06 31.7 11.1 157 454-666 45-206 (386)
10 3bh0_A DNAB-like replicative h 96.0 0.022 9.3E-07 35.8 7.2 44 591-635 182-231 (315)
11 2q6t_A DNAB replication FORK h 96.0 0.1 4.4E-06 30.8 10.6 142 457-635 203-363 (444)
12 2dr3_A UPF0273 protein PH0284; 95.9 0.068 2.9E-06 32.2 9.2 48 591-638 129-176 (247)
13 2qag_A Septin-2, protein NEDD5 95.9 0.0026 1.1E-07 42.8 1.9 25 456-480 39-63 (361)
14 2qag_B Septin-6, protein NEDD5 95.8 0.0032 1.4E-07 42.1 2.3 61 381-477 3-65 (427)
15 2qag_C Septin-7; cell cycle, c 95.8 0.0029 1.2E-07 42.4 2.0 25 456-480 33-57 (418)
16 2pt7_A CAG-ALFA; ATPase, prote 95.8 0.005 2.1E-07 40.7 3.1 48 456-509 173-222 (330)
17 2gza_A Type IV secretion syste 95.6 0.0036 1.5E-07 41.8 1.8 40 456-501 177-216 (361)
18 2ehv_A Hypothetical protein PH 95.6 0.14 6E-06 29.8 10.6 44 593-636 138-183 (251)
19 2r6a_A DNAB helicase, replicat 95.6 0.038 1.6E-06 34.1 6.9 143 457-635 206-364 (454)
20 2cvh_A DNA repair and recombin 95.4 0.0084 3.5E-07 39.0 3.0 45 589-633 104-154 (220)
21 2eyu_A Twitching motility prot 95.3 0.0098 4.1E-07 38.5 3.1 31 450-480 19-51 (261)
22 2oap_1 GSPE-2, type II secreti 95.0 0.0066 2.8E-07 39.8 1.6 161 327-501 113-301 (511)
23 3jvv_A Twitching mobility prot 94.9 0.011 4.8E-07 38.0 2.6 53 448-505 115-169 (356)
24 1p9r_A General secretion pathw 94.8 0.028 1.2E-06 35.1 4.2 59 437-501 148-209 (418)
25 2qnr_A Septin-2, protein NEDD5 94.5 0.014 5.9E-07 37.3 2.1 38 588-629 155-192 (301)
26 2ewv_A Twitching motility prot 94.4 0.033 1.4E-06 34.6 3.8 32 448-479 128-161 (372)
27 1svi_A GTP-binding protein YSX 94.2 0.026 1.1E-06 35.3 3.0 24 452-475 21-44 (195)
28 2w0m_A SSO2452; RECA, SSPF, un 93.8 0.083 3.5E-06 31.5 4.9 48 590-637 123-170 (235)
29 1sxj_D Activator 1 41 kDa subu 93.7 0.028 1.2E-06 35.0 2.4 70 409-481 7-85 (353)
30 3llm_A ATP-dependent RNA helic 93.2 0.13 5.5E-06 30.0 5.2 45 452-496 74-119 (235)
31 1sxj_B Activator 1 37 kDa subu 93.1 0.06 2.5E-06 32.6 3.3 35 452-486 40-74 (323)
32 1fnn_A CDC6P, cell division co 93.0 0.26 1.1E-05 27.8 6.4 75 589-667 124-203 (389)
33 3cuq_A Vacuolar-sorting protei 92.8 0.26 1.1E-05 27.9 6.1 97 695-796 113-210 (234)
34 2qby_B CDC6 homolog 3, cell di 92.7 0.22 9.2E-06 28.4 5.7 144 454-655 45-195 (384)
35 1h65_A Chloroplast outer envel 92.3 0.073 3.1E-06 32.0 2.8 20 456-475 41-60 (270)
36 1nlf_A Regulatory protein REPA 92.1 0.0033 1.4E-07 42.1 -4.3 45 591-635 134-181 (279)
37 3lxw_A GTPase IMAP family memb 92.1 0.071 3E-06 32.1 2.5 22 454-475 21-42 (247)
38 3def_A T7I23.11 protein; chlor 91.8 0.084 3.5E-06 31.5 2.7 22 456-477 38-59 (262)
39 2qpt_A EH domain-containing pr 91.3 0.11 4.5E-06 30.7 2.7 33 520-553 339-371 (550)
40 1w5s_A ORC2; CDC6, DNA replica 91.2 0.64 2.7E-05 24.9 6.6 78 590-667 138-225 (412)
41 2qm8_A GTPase/ATPase; G protei 91.0 0.14 5.8E-06 29.9 3.1 39 455-495 56-94 (337)
42 1ltq_A Polynucleotide kinase; 90.8 0.064 2.7E-06 32.4 1.3 51 587-637 156-216 (301)
43 3b6e_A Interferon-induced heli 90.8 0.17 7E-06 29.3 3.4 43 455-497 49-94 (216)
44 1rj9_A FTSY, signal recognitio 90.7 0.46 1.9E-05 26.0 5.6 73 456-533 104-183 (304)
45 2xtp_A GTPase IMAP family memb 90.4 0.15 6.2E-06 29.7 2.8 21 456-476 24-44 (260)
46 1tq4_A IIGP1, interferon-induc 90.1 0.13 5.5E-06 30.1 2.3 21 455-475 70-90 (413)
47 2xau_A PRE-mRNA-splicing facto 89.9 0.25 1.1E-05 28.0 3.6 20 637-656 645-664 (773)
48 1jwy_B Dynamin A GTPase domain 89.6 0.2 8.3E-06 28.7 2.9 170 454-663 24-211 (315)
49 3p32_A Probable GTPase RV1496/ 89.6 0.29 1.2E-05 27.5 3.7 37 457-495 82-118 (355)
50 1sxj_C Activator 1 40 kDa subu 89.6 0.25 1E-05 28.0 3.4 31 452-482 44-74 (340)
51 1jr3_A DNA polymerase III subu 89.5 0.14 6E-06 29.8 2.1 33 452-484 35-68 (373)
52 1gvn_B Zeta; postsegregational 89.5 1.1 4.5E-05 23.2 7.6 33 456-495 35-67 (287)
53 2x2e_A Dynamin-1; nitration, h 89.3 0.1 4.2E-06 30.9 1.2 21 455-475 27-47 (341)
54 2p67_A LAO/AO transport system 89.1 0.38 1.6E-05 26.6 4.1 40 454-495 56-95 (341)
55 2chg_A Replication factor C sm 89.0 0.41 1.7E-05 26.3 4.2 34 453-486 37-70 (226)
56 1wp9_A ATP-dependent RNA helic 89.0 0.62 2.6E-05 25.0 5.1 12 700-711 406-417 (494)
57 2w00_A HSDR, R.ECOR124I; ATP-b 89.0 0.36 1.5E-05 26.8 3.9 72 375-455 632-709 (1038)
58 3foz_A TRNA delta(2)-isopenten 88.9 0.13 5.6E-06 30.0 1.6 65 450-526 5-85 (316)
59 1tf7_A KAIC; homohexamer, hexa 88.8 0.7 3E-05 24.6 5.3 239 328-636 156-418 (525)
60 2aka_B Dynamin-1; fusion prote 88.8 0.24 1E-05 28.0 2.9 24 453-476 25-48 (299)
61 3eph_A TRNA isopentenyltransfe 88.8 0.13 5.5E-06 30.0 1.5 60 455-522 3-73 (409)
62 2ff7_A Alpha-hemolysin translo 87.8 0.32 1.3E-05 27.2 3.0 183 449-682 30-238 (247)
63 3iby_A Ferrous iron transport 87.8 0.3 1.3E-05 27.4 2.9 22 454-475 1-22 (256)
64 2ze6_A Isopentenyl transferase 87.7 0.17 7.3E-06 29.1 1.6 66 454-527 1-77 (253)
65 3dkp_A Probable ATP-dependent 87.7 0.38 1.6E-05 26.6 3.3 39 456-494 68-106 (245)
66 2wsm_A Hydrogenase expression/ 87.6 0.4 1.7E-05 26.4 3.4 27 452-478 28-54 (221)
67 3euj_A Chromosome partition pr 87.6 0.33 1.4E-05 27.1 2.9 17 617-633 434-450 (483)
68 2oca_A DAR protein, ATP-depend 87.2 0.86 3.6E-05 23.9 4.9 25 454-478 128-152 (510)
69 3d3q_A TRNA delta(2)-isopenten 87.1 0.2 8.4E-06 28.7 1.6 66 453-526 5-82 (340)
70 2e87_A Hypothetical protein PH 86.9 0.33 1.4E-05 27.1 2.7 23 453-475 166-188 (357)
71 2chq_A Replication factor C sm 86.8 0.57 2.4E-05 25.3 3.8 29 453-481 37-65 (319)
72 1iqp_A RFCS; clamp loader, ext 86.8 0.66 2.8E-05 24.8 4.1 28 453-480 45-72 (327)
73 3crm_A TRNA delta(2)-isopenten 86.4 0.22 9.2E-06 28.4 1.5 63 452-526 2-80 (323)
74 2pl3_A Probable ATP-dependent 86.3 0.72 3E-05 24.5 4.1 39 456-494 64-105 (236)
75 1ub9_A Hypothetical protein PH 86.1 0.68 2.9E-05 24.7 3.9 62 740-801 15-77 (100)
76 1hv8_A Putative ATP-dependent 86.1 0.45 1.9E-05 26.0 3.0 16 456-471 46-61 (367)
77 1u5t_B Defective in vacuolar p 86.1 0.82 3.4E-05 24.1 4.3 90 696-790 59-155 (169)
78 2qc0_A Uncharacterized protein 85.8 0.82 3.5E-05 24.1 4.2 56 745-801 301-356 (373)
79 2xgj_A ATP-dependent RNA helic 85.7 1.3 5.3E-05 22.7 5.1 25 426-450 427-456 (1010)
80 3exa_A TRNA delta(2)-isopenten 85.3 0.25 1.1E-05 27.9 1.4 64 455-526 4-78 (322)
81 1sxj_E Activator 1 40 kDa subu 85.0 0.47 2E-05 25.9 2.7 27 453-479 35-61 (354)
82 2nyx_A Probable transcriptiona 84.9 0.96 4.1E-05 23.6 4.2 58 745-802 49-107 (168)
83 2ged_A SR-beta, signal recogni 84.8 0.21 8.9E-06 28.5 0.8 48 455-502 49-96 (193)
84 3a8t_A Adenylate isopentenyltr 84.2 0.3 1.3E-05 27.4 1.4 53 455-514 41-104 (339)
85 2vxz_A Pyrsv_GP04; viral prote 83.9 1.2 5.2E-05 22.8 4.4 52 745-796 14-65 (165)
86 2cxx_A Probable GTP-binding pr 83.9 0.63 2.6E-05 25.0 2.9 22 454-475 1-22 (190)
87 2qor_A Guanylate kinase; phosp 83.8 0.58 2.4E-05 25.2 2.7 27 450-476 8-34 (204)
88 1fft_B Ubiquinol oxidase; elec 83.4 0.77 3.2E-05 24.3 3.2 38 65-102 31-68 (315)
89 1pjr_A PCRA; DNA repair, DNA r 83.3 2.2 9.1E-05 20.9 6.6 20 335-354 363-382 (724)
90 3h4m_A Proteasome-activating n 83.1 2.2 9.3E-05 20.9 9.2 34 456-496 53-86 (285)
91 1njg_A DNA polymerase III subu 82.9 0.71 3E-05 24.6 2.9 32 452-483 42-74 (250)
92 1n0w_A DNA repair protein RAD5 82.9 0.23 9.5E-06 28.3 0.3 58 609-667 148-207 (243)
93 1u5t_A Appears to BE functiona 82.7 2.3 9.6E-05 20.8 5.6 88 697-790 129-216 (233)
94 3bdd_A Regulatory protein MARR 82.7 1.3 5.3E-05 22.7 4.1 56 745-800 35-91 (142)
95 1ly1_A Polynucleotide kinase; 82.6 0.73 3.1E-05 24.5 2.8 24 454-477 1-25 (181)
96 3iij_A Coilin-interacting nucl 82.6 0.4 1.7E-05 26.4 1.5 20 452-471 9-28 (180)
97 1rif_A DAR protein, DNA helica 82.2 1.8 7.4E-05 21.6 4.7 39 454-495 128-166 (282)
98 3kta_A Chromosome segregation 82.1 1.4 5.9E-05 22.4 4.1 39 443-482 16-54 (182)
99 3aez_A Pantothenate kinase; tr 81.8 1.2 5.2E-05 22.8 3.7 39 453-493 88-129 (312)
100 3l9o_A ATP-dependent RNA helic 81.4 2.4 0.0001 20.6 5.1 59 589-647 546-610 (1108)
101 3lxx_A GTPase IMAP family memb 81.4 0.78 3.3E-05 24.3 2.6 20 457-476 32-51 (239)
102 3fgn_A Dethiobiotin synthetase 81.3 1.1 4.8E-05 23.0 3.4 30 452-481 24-54 (251)
103 1es6_A Matrix protein VP40; be 81.0 0.37 1.6E-05 26.7 0.9 19 393-411 217-236 (296)
104 2p6r_A Afuhel308 helicase; pro 81.0 1.9 8E-05 21.4 4.5 39 748-790 606-659 (702)
105 3fht_A ATP-dependent RNA helic 81.0 0.76 3.2E-05 24.3 2.4 16 456-471 66-81 (412)
106 3lmm_A Uncharacterized protein 80.6 0.52 2.2E-05 25.6 1.5 64 742-805 517-581 (583)
107 1knq_A Gluconate kinase; ALFA/ 80.4 0.91 3.8E-05 23.7 2.7 27 449-475 2-29 (175)
108 2qu8_A Putative nucleolar GTP- 80.3 0.93 3.9E-05 23.7 2.7 22 454-475 29-50 (228)
109 2dyk_A GTP-binding protein; GT 80.2 0.99 4.1E-05 23.5 2.8 22 454-475 1-22 (161)
110 1mky_A Probable GTP-binding pr 80.1 0.98 4.1E-05 23.5 2.8 24 453-476 179-202 (439)
111 1a5t_A Delta prime, HOLB; zinc 80.1 0.99 4.1E-05 23.5 2.8 30 452-481 21-51 (334)
112 3c5c_A RAS-like protein 12; GD 79.8 1 4.3E-05 23.4 2.8 44 456-503 23-75 (187)
113 2fna_A Conserved hypothetical 79.8 2.8 0.00012 20.1 5.9 43 591-635 138-180 (357)
114 2www_A Methylmalonic aciduria 79.5 2 8.4E-05 21.2 4.2 37 457-495 77-113 (349)
115 2pex_A Transcriptional regulat 79.3 1.2 5.1E-05 22.8 3.0 54 746-799 52-106 (153)
116 1sfx_A Conserved hypothetical 79.2 1.7 7.2E-05 21.7 3.8 45 744-788 23-67 (109)
117 1nrw_A Hypothetical protein, h 79.1 3 0.00012 19.9 7.4 79 608-714 24-102 (288)
118 3fmp_B ATP-dependent RNA helic 78.9 0.8 3.4E-05 24.2 2.0 15 456-470 133-147 (479)
119 2vv5_A MSCS, small-conductance 78.8 3 0.00013 19.9 7.3 54 342-395 215-268 (286)
120 2gno_A DNA polymerase III, gam 78.7 2.5 0.00011 20.5 4.5 112 451-648 15-133 (305)
121 3ch4_B Pmkase, phosphomevalona 78.4 1.2 4.8E-05 23.0 2.7 27 449-475 4-32 (202)
122 3bj6_A Transcriptional regulat 78.1 1.6 6.7E-05 21.9 3.3 58 745-802 44-102 (152)
123 3a1s_A Iron(II) transport prot 77.9 1.3 5.3E-05 22.7 2.8 24 452-475 3-26 (258)
124 2rdp_A Putative transcriptiona 77.9 1.9 8.2E-05 21.3 3.7 57 745-801 46-103 (150)
125 1vhq_A Enhancing lycopene bios 77.7 2.6 0.00011 20.3 4.4 110 588-717 5-137 (232)
126 2v6i_A RNA helicase; membrane, 77.7 0.57 2.4E-05 25.3 0.9 43 590-636 93-135 (431)
127 2gj8_A MNME, tRNA modification 77.6 1.3 5.7E-05 22.5 2.8 20 456-475 6-25 (172)
128 1fuu_A Yeast initiation factor 77.3 1 4.4E-05 23.3 2.2 15 457-471 61-75 (394)
129 2i3b_A HCR-ntpase, human cance 76.7 1.3 5.5E-05 22.6 2.6 24 456-480 3-26 (189)
130 1yrb_A ATP(GTP)binding protein 76.6 2.5 0.00011 20.4 4.0 40 454-496 14-53 (262)
131 2wte_A CSA3; antiviral protein 76.4 3.5 0.00015 19.4 4.8 57 744-802 155-211 (244)
132 1sq5_A Pantothenate kinase; P- 76.2 2 8.2E-05 21.3 3.3 105 431-577 65-174 (308)
133 2qww_A Transcriptional regulat 76.1 2.1 8.7E-05 21.1 3.5 41 746-786 46-86 (154)
134 3bs4_A Uncharacterized protein 75.8 2 8.4E-05 21.2 3.3 26 457-482 24-49 (260)
135 2qtf_A Protein HFLX, GTP-bindi 75.7 1.6 6.8E-05 21.9 2.8 26 452-477 177-202 (364)
136 1lv7_A FTSH; alpha/beta domain 75.6 3.7 0.00015 19.2 8.0 36 455-497 46-81 (257)
137 3h1t_A Type I site-specific re 75.3 3.3 0.00014 19.5 4.3 48 456-504 200-254 (590)
138 2hf9_A Probable hydrogenase ni 75.3 1.8 7.5E-05 21.6 2.9 39 453-494 37-75 (226)
139 1c1y_A RAS-related protein RAP 75.3 1.7 7.1E-05 21.7 2.8 23 454-476 1-25 (167)
140 2zj8_A DNA helicase, putative 74.9 3.1 0.00013 19.8 4.1 24 756-779 676-699 (720)
141 3iuy_A Probable ATP-dependent 74.7 1.2 4.9E-05 22.9 1.9 19 456-474 59-77 (228)
142 2b30_A Pvivax hypothetical pro 74.7 3.8 0.00016 19.1 4.6 105 588-715 26-133 (301)
143 2v1u_A Cell division control p 74.3 2.1 8.7E-05 21.1 3.1 26 453-478 43-68 (387)
144 1s3j_A YUSO protein; structura 74.3 2.7 0.00012 20.2 3.7 55 745-799 41-96 (155)
145 3cf0_A Transitional endoplasmi 74.2 3.9 0.00017 19.0 9.4 169 456-710 51-233 (301)
146 1uj2_A Uridine-cytidine kinase 74.2 1.7 7.1E-05 21.7 2.6 26 453-478 20-46 (252)
147 2w58_A DNAI, primosome compone 74.1 2.6 0.00011 20.4 3.5 27 455-481 55-81 (202)
148 2fz4_A DNA repair protein RAD2 74.0 3.1 0.00013 19.8 3.9 16 455-470 109-124 (237)
149 1odf_A YGR205W, hypothetical 3 74.0 2.3 9.8E-05 20.7 3.3 28 454-481 30-58 (290)
150 1sd4_A Penicillinase repressor 73.9 3.6 0.00015 19.3 4.2 45 745-789 14-62 (126)
151 3dnp_A Stress response protein 73.8 4 0.00017 18.9 5.7 75 616-714 30-104 (290)
152 3cjn_A Transcriptional regulat 73.8 3.6 0.00015 19.2 4.2 57 745-801 56-113 (162)
153 2i4i_A ATP-dependent RNA helic 73.6 1.9 8.1E-05 21.3 2.8 31 457-487 55-85 (417)
154 1e0t_A Pyruvate kinase, PK; ph 73.4 0.96 4E-05 23.6 1.2 240 328-652 39-293 (470)
155 2pa8_L DNA-directed RNA polyme 73.4 3.2 0.00013 19.7 3.8 55 471-538 24-84 (92)
156 2z83_A Helicase/nucleoside tri 73.0 0.89 3.7E-05 23.8 0.9 14 700-713 201-214 (459)
157 2cbz_A Multidrug resistance-as 72.9 3 0.00013 19.9 3.6 52 449-505 26-86 (237)
158 3d8b_A Fidgetin-like protein 1 72.8 4.2 0.00018 18.8 9.8 38 453-497 115-153 (357)
159 1s2m_A Putative ATP-dependent 72.7 1.5 6.5E-05 22.0 2.1 25 456-483 60-84 (400)
160 2px0_A Flagellar biosynthesis 72.7 4.3 0.00018 18.7 5.7 41 456-497 107-147 (296)
161 2bjv_A PSP operon transcriptio 72.7 2.6 0.00011 20.3 3.3 35 456-495 31-66 (265)
162 3dmq_A RNA polymerase-associat 72.6 3.4 0.00014 19.4 3.9 10 402-411 566-575 (968)
163 3i5x_A ATP-dependent RNA helic 72.6 4 0.00017 19.0 4.2 14 457-470 114-127 (563)
164 2kbe_A ATP-dependent RNA helic 72.5 1.4 5.9E-05 22.3 1.9 25 455-479 62-86 (226)
165 1xtq_A GTP-binding protein RHE 72.5 2.3 9.5E-05 20.8 2.9 44 456-503 8-60 (177)
166 3ech_A MEXR, multidrug resista 72.4 2.2 9.4E-05 20.8 2.9 57 745-801 41-98 (142)
167 1gm5_A RECG; helicase, replica 72.3 1.2 5.1E-05 22.8 1.5 26 446-471 379-406 (780)
168 3ber_A Probable ATP-dependent 72.3 2.7 0.00012 20.2 3.3 38 456-494 82-119 (249)
169 3kp7_A Transcriptional regulat 72.1 1.6 6.6E-05 22.0 2.0 53 746-799 43-98 (151)
170 2olj_A Amino acid ABC transpor 72.1 3.2 0.00014 19.6 3.6 164 445-655 41-232 (263)
171 2rex_B RHO-related GTP-binding 72.0 1.7 7.2E-05 21.7 2.2 44 456-503 12-64 (197)
172 2eth_A Transcriptional regulat 72.0 3.6 0.00015 19.3 3.9 57 745-801 48-105 (154)
173 1uaa_A REP helicase, protein ( 72.0 4.4 0.00019 18.6 7.3 13 339-351 358-370 (673)
174 1wrb_A DJVLGB; RNA helicase, D 71.9 3.4 0.00014 19.5 3.7 30 456-485 62-91 (253)
175 2nnn_A Probable transcriptiona 71.9 2.3 9.5E-05 20.8 2.8 58 745-802 42-100 (140)
176 2bv6_A MGRA, HTH-type transcri 71.9 2.8 0.00012 20.1 3.3 21 326-346 120-140 (142)
177 3gg8_A Pyruvate kinase; malari 71.7 4.4 0.00019 18.6 4.3 121 507-652 199-328 (511)
178 1of1_A Thymidine kinase; trans 71.5 2 8.3E-05 21.2 2.4 24 452-475 44-70 (376)
179 1xpp_A TA1416, DNA-directed RN 71.2 4.4 0.00018 18.6 4.1 56 493-557 45-105 (115)
180 1e2k_A Thymidine kinase; trans 71.1 2 8.6E-05 21.1 2.4 21 454-474 1-24 (331)
181 2gxq_A Heat resistant RNA depe 70.6 2.2 9.1E-05 20.9 2.5 22 456-477 40-61 (207)
182 1f2t_A RAD50 ABC-ATPase; DNA d 70.6 2.5 0.0001 20.5 2.8 26 458-483 27-52 (149)
183 1l2t_A Hypothetical ABC transp 70.6 3.6 0.00015 19.2 3.6 31 447-478 24-54 (235)
184 1qhl_A Protein (cell division 70.5 1.2 5E-05 22.9 1.1 29 449-478 23-51 (227)
185 2db3_A ATP-dependent RNA helic 70.5 3.8 0.00016 19.1 3.7 25 456-480 95-120 (434)
186 1q0u_A Bstdead; DEAD protein, 70.4 1.6 6.7E-05 21.9 1.8 25 456-483 43-67 (219)
187 3lx5_A Ferrous iron uptake tra 70.3 2.5 0.00011 20.4 2.8 23 453-475 2-24 (272)
188 1sf9_A YFHH hypothetical prote 70.3 1.3 5.6E-05 22.5 1.3 40 520-559 15-55 (128)
189 3bja_A Transcriptional regulat 70.2 2.6 0.00011 20.4 2.8 57 745-801 37-94 (139)
190 2ihy_A ABC transporter, ATP-bi 70.0 3.5 0.00015 19.4 3.4 166 438-636 27-224 (279)
191 2ghi_A Transport protein; mult 69.9 2.4 0.0001 20.6 2.6 39 451-495 43-81 (260)
192 1b0u_A Histidine permease; ABC 69.7 2.9 0.00012 20.0 2.9 164 445-655 23-226 (262)
193 1nrj_B SR-beta, signal recogni 69.6 2.7 0.00011 20.2 2.8 23 454-476 12-34 (218)
194 2fv8_A H6, RHO-related GTP-bin 69.5 3.7 0.00016 19.2 3.5 44 456-503 27-79 (207)
195 2a9k_A RAS-related protein RAL 69.1 2.9 0.00012 20.0 2.9 44 456-503 20-72 (187)
196 2jlq_A Serine protease subunit 69.1 1.1 4.8E-05 23.0 0.8 14 646-659 373-386 (451)
197 3bk7_A ABC transporter ATP-bin 69.0 2.8 0.00012 20.1 2.8 40 308-353 245-284 (607)
198 3ec1_A YQEH GTPase; atnos1, at 69.0 4.4 0.00018 18.6 3.8 25 457-481 165-189 (369)
199 2p5v_A Transcriptional regulat 68.9 5.1 0.00021 18.1 4.5 35 596-630 27-61 (162)
200 1pui_A ENGB, probable GTP-bind 68.8 1.4 5.7E-05 22.4 1.1 22 454-475 26-47 (210)
201 1mv5_A LMRA, multidrug resista 68.7 2.6 0.00011 20.3 2.6 66 593-676 160-226 (243)
202 1yks_A Genome polyprotein [con 68.4 1.3 5.5E-05 22.6 1.0 17 698-714 186-202 (440)
203 1c4o_A DNA nucleotide excision 68.3 3.8 0.00016 19.1 3.3 20 761-780 621-640 (664)
204 3oes_A GTPase rhebl1; small GT 67.7 2.6 0.00011 20.3 2.4 44 456-503 26-78 (201)
205 3con_A GTPase NRAS; structural 67.6 3.2 0.00013 19.7 2.8 60 443-503 9-75 (190)
206 3k0l_A Repressor protein; heli 67.6 5 0.00021 18.2 3.8 54 745-798 50-104 (162)
207 3fmo_B ATP-dependent RNA helic 67.5 3.7 0.00016 19.2 3.1 23 456-481 133-155 (300)
208 3khd_A Pyruvate kinase; malari 67.5 1.4 6E-05 22.3 1.0 128 499-652 196-337 (520)
209 2z0m_A 337AA long hypothetical 67.5 2 8.3E-05 21.2 1.7 46 586-636 127-172 (337)
210 2yv5_A YJEQ protein; hydrolase 67.2 2.7 0.00012 20.2 2.4 19 457-475 168-186 (302)
211 3a00_A Guanylate kinase, GMP k 67.0 2.8 0.00012 20.1 2.4 29 457-490 4-32 (186)
212 1t6n_A Probable ATP-dependent 67.0 3.6 0.00015 19.3 3.0 39 456-495 53-91 (220)
213 1a7j_A Phosphoribulokinase; tr 66.8 1.7 7E-05 21.8 1.3 45 619-667 198-248 (290)
214 1jjv_A Dephospho-COA kinase; P 66.8 3.1 0.00013 19.8 2.6 19 454-472 1-20 (206)
215 3i8s_A Ferrous iron transport 66.7 3.5 0.00015 19.4 2.9 20 456-475 5-24 (274)
216 2eyq_A TRCF, transcription-rep 66.5 2.2 9.3E-05 20.9 1.8 34 444-479 612-647 (1151)
217 2grj_A Dephospho-COA kinase; T 66.5 3.1 0.00013 19.7 2.6 21 454-474 10-32 (192)
218 2bov_A RAla, RAS-related prote 66.4 3.5 0.00015 19.3 2.8 48 452-503 10-68 (206)
219 2w25_A Probable transcriptiona 66.4 5.7 0.00024 17.8 4.7 14 698-711 114-127 (150)
220 3llu_A RAS-related GTP-binding 66.3 3.6 0.00015 19.3 2.9 23 453-475 19-41 (196)
221 2wji_A Ferrous iron transport 66.2 3.2 0.00013 19.7 2.6 19 457-475 6-24 (165)
222 3nrv_A Putative transcriptiona 66.1 3.5 0.00015 19.4 2.8 57 745-801 44-101 (148)
223 3bos_A Putative DNA replicatio 66.1 5.8 0.00024 17.8 4.0 28 453-480 51-78 (242)
224 1wn2_A Peptidyl-tRNA hydrolase 66.0 4.5 0.00019 18.5 3.3 47 328-379 64-116 (121)
225 1nks_A Adenylate kinase; therm 66.0 3.4 0.00014 19.4 2.7 25 454-478 1-25 (194)
226 1kao_A RAP2A; GTP-binding prot 66.0 3.6 0.00015 19.3 2.8 23 454-476 1-25 (167)
227 3neu_A LIN1836 protein; struct 65.9 5.8 0.00024 17.7 4.6 59 735-793 7-75 (125)
228 3hqn_D Pyruvate kinase, PK; TI 65.5 1.9 8.2E-05 21.3 1.4 116 510-652 187-312 (499)
229 2fbi_A Probable transcriptiona 65.2 5.9 0.00025 17.7 3.8 55 745-799 40-95 (142)
230 1a3w_A Pyruvate kinase; allost 65.2 1.5 6.1E-05 22.2 0.7 117 509-652 187-313 (500)
231 1ii8_A RAD50 ABC-ATPase; MRE11 65.2 4 0.00017 18.9 2.9 30 449-480 19-48 (195)
232 1qde_A EIF4A, translation init 65.1 2.8 0.00012 20.1 2.1 22 456-477 53-74 (224)
233 1vht_A Dephospho-COA kinase; s 64.9 3.6 0.00015 19.3 2.7 21 453-473 2-23 (218)
234 1sxj_A Activator 1 95 kDa subu 64.7 3.6 0.00015 19.2 2.6 26 453-478 76-101 (516)
235 2fwr_A DNA repair protein RAD2 64.5 4.2 0.00018 18.8 2.9 36 590-632 192-227 (472)
236 2fa5_A Transcriptional regulat 64.3 3.7 0.00015 19.2 2.6 41 746-786 54-94 (162)
237 2bwj_A Adenylate kinase 5; pho 64.1 1.9 8E-05 21.3 1.1 21 450-470 8-28 (199)
238 3boq_A Transcriptional regulat 64.0 2.2 9.3E-05 20.9 1.4 54 746-799 52-107 (160)
239 1oyw_A RECQ helicase, ATP-depe 64.0 1.9 7.8E-05 21.4 1.0 20 771-790 468-487 (523)
240 1xti_A Probable ATP-dependent 63.8 2.6 0.00011 20.3 1.8 125 585-715 149-276 (391)
241 2gco_A H9, RHO-related GTP-bin 63.7 5 0.00021 18.2 3.2 44 456-503 27-79 (201)
242 2qi9_C Vitamin B12 import ATP- 63.7 6 0.00025 17.6 3.6 45 445-495 17-61 (249)
243 2onk_A Molybdate/tungstate ABC 63.5 3.6 0.00015 19.3 2.4 153 455-655 25-200 (240)
244 3n70_A Transport activator; si 63.4 3.5 0.00015 19.3 2.4 36 455-495 25-61 (145)
245 1ky3_A GTP-binding protein YPT 63.4 4.2 0.00018 18.8 2.8 22 455-476 9-30 (182)
246 1ye8_A Protein THEP1, hypothet 63.3 4.2 0.00018 18.8 2.8 49 592-644 101-149 (178)
247 2d2e_A SUFC protein; ABC-ATPas 63.0 1.5 6.1E-05 22.2 0.4 59 441-501 12-74 (250)
248 2h57_A ADP-ribosylation factor 63.0 3.4 0.00014 19.5 2.2 23 453-475 20-42 (190)
249 3f3x_A Transcriptional regulat 62.8 3.4 0.00014 19.4 2.2 53 747-800 43-96 (144)
250 2bdt_A BH3686; alpha-beta prot 62.8 3.7 0.00016 19.2 2.4 18 457-474 5-22 (189)
251 2rcn_A Probable GTPase ENGC; Y 62.7 3.8 0.00016 19.1 2.4 46 457-502 218-284 (358)
252 2k4b_A Transcriptional regulat 62.7 5.8 0.00024 17.7 3.4 47 745-791 39-89 (99)
253 3eiq_A Eukaryotic initiation f 62.5 2.9 0.00012 20.0 1.8 51 585-641 180-230 (414)
254 2a61_A Transcriptional regulat 62.5 4.4 0.00018 18.7 2.7 57 744-800 36-93 (145)
255 2r44_A Uncharacterized protein 62.5 3.4 0.00014 19.5 2.1 20 456-475 48-67 (331)
256 3ly5_A ATP-dependent RNA helic 62.5 5.8 0.00025 17.7 3.4 28 456-483 93-120 (262)
257 2wv9_A Flavivirin protease NS2 62.3 2.1 8.7E-05 21.1 1.0 103 590-715 332-436 (673)
258 1g8p_A Magnesium-chelatase 38 62.2 3 0.00012 19.9 1.8 46 739-789 269-314 (350)
259 3kqn_A Serine protease/ntpase/ 62.2 3.5 0.00015 19.3 2.2 103 591-716 96-200 (437)
260 2j1l_A RHO-related GTP-binding 61.9 2.1 8.7E-05 21.1 1.0 48 456-503 36-88 (214)
261 3nh6_A ATP-binding cassette SU 61.9 3.8 0.00016 19.1 2.3 143 453-636 79-250 (306)
262 2pjh_A Protein NPL4, nuclear p 61.8 2 8.6E-05 21.1 0.9 11 675-685 69-79 (80)
263 3gyg_A NTD biosynthesis operon 61.7 6.8 0.00029 17.2 3.7 42 610-651 46-87 (289)
264 3fm5_A Transcriptional regulat 61.7 6.6 0.00028 17.3 3.5 53 746-798 44-98 (150)
265 2jeo_A Uridine-cytidine kinase 61.7 6 0.00025 17.6 3.3 33 444-477 15-48 (245)
266 1fzq_A ADP-ribosylation factor 61.4 4.6 0.00019 18.5 2.7 20 456-475 18-37 (181)
267 2hr3_A Probable transcriptiona 61.4 6.9 0.00029 17.2 3.6 57 745-801 39-97 (147)
268 3eco_A MEPR; mutlidrug efflux 61.4 6.3 0.00027 17.5 3.4 56 746-801 36-94 (139)
269 2pn6_A ST1022, 150AA long hypo 61.3 6.9 0.00029 17.1 4.0 24 597-620 21-44 (150)
270 1ls1_A Signal recognition part 61.3 7 0.00029 17.1 4.9 69 457-527 101-173 (295)
271 2ixe_A Antigen peptide transpo 61.2 4.5 0.00019 18.6 2.6 153 449-636 40-218 (271)
272 2iub_A CORA, divalent cation t 61.1 7 0.00029 17.1 5.8 11 339-349 85-95 (363)
273 3lv8_A DTMP kinase, thymidylat 61.0 5.5 0.00023 17.9 3.0 41 438-478 9-51 (236)
274 1f6b_A SAR1; gtpases, N-termin 61.0 4.6 0.00019 18.5 2.6 20 455-474 26-45 (198)
275 1uf9_A TT1252 protein; P-loop, 60.8 4.9 0.00021 18.2 2.7 21 452-472 5-26 (203)
276 2npi_A Protein CLP1; CLP1-PCF1 60.7 2.6 0.00011 20.4 1.3 48 453-501 137-184 (460)
277 1z91_A Organic hydroperoxide r 60.5 6.6 0.00028 17.3 3.4 19 327-345 124-142 (147)
278 3enu_A Nitrollin, putative unc 60.4 2.2 9.1E-05 20.9 0.9 23 677-699 34-56 (114)
279 2j0s_A ATP-dependent RNA helic 60.4 2.5 0.00011 20.4 1.2 15 457-471 77-91 (410)
280 2pcj_A ABC transporter, lipopr 60.3 7.2 0.0003 17.0 3.7 149 447-654 23-211 (224)
281 3cdh_A Transcriptional regulat 60.2 3.2 0.00014 19.6 1.7 40 746-785 48-87 (155)
282 2wjg_A FEOB, ferrous iron tran 60.1 4.8 0.0002 18.3 2.6 20 456-475 9-28 (188)
283 2yz2_A Putative ABC transporte 60.0 7.3 0.00031 17.0 3.6 45 447-496 26-70 (266)
284 1u0l_A Probable GTPase ENGC; p 60.0 3.3 0.00014 19.6 1.7 79 457-538 172-289 (301)
285 1twf_K B13.6, DNA-directed RNA 59.8 7.3 0.00031 17.0 4.3 55 471-538 42-102 (120)
286 2ia0_A Putative HTH-type trans 59.8 7.3 0.00031 17.0 4.7 32 752-783 28-59 (171)
287 2cyy_A Putative HTH-type trans 59.8 7.4 0.00031 17.0 4.5 36 596-631 24-59 (151)
288 3hsr_A HTH-type transcriptiona 59.8 2.6 0.00011 20.4 1.1 18 327-344 120-137 (140)
289 2bbw_A Adenylate kinase 4, AK4 59.8 3.2 0.00013 19.7 1.6 20 450-469 23-42 (246)
290 2whx_A Serine protease/ntpase/ 59.7 2.2 9.2E-05 20.9 0.8 42 591-640 278-323 (618)
291 2it1_A 362AA long hypothetical 59.7 3.9 0.00016 19.0 2.1 163 450-657 25-209 (362)
292 2pze_A Cystic fibrosis transme 59.7 4.9 0.00021 18.3 2.6 42 449-495 29-70 (229)
293 2zu0_C Probable ATP-dependent 59.7 4.9 0.00021 18.3 2.6 27 449-475 41-67 (267)
294 2bbs_A Cystic fibrosis transme 59.7 5.2 0.00022 18.1 2.7 46 444-495 50-100 (290)
295 3fe2_A Probable ATP-dependent 59.7 7.4 0.00031 16.9 3.6 27 456-482 68-94 (242)
296 3dc4_A Kinesin-like protein NO 59.6 2.8 0.00012 20.1 1.3 16 456-471 97-112 (344)
297 3dhw_C Methionine import ATP-b 59.6 7.4 0.00031 16.9 3.7 166 448-659 25-218 (343)
298 1byi_A Dethiobiotin synthase; 59.5 7.4 0.00031 16.9 4.5 36 456-495 3-39 (224)
299 2r62_A Cell division protease 59.5 2.7 0.00011 20.2 1.2 69 410-497 2-80 (268)
300 3jw4_A Transcriptional regulat 59.5 4.2 0.00018 18.8 2.2 56 746-801 46-104 (148)
301 1rlk_A Hypothetical protein TA 59.4 7 0.00029 17.1 3.3 47 328-379 60-112 (117)
302 3bpv_A Transcriptional regulat 59.3 7.5 0.00031 16.9 3.8 55 745-799 33-88 (138)
303 2p5s_A RAS and EF-hand domain 59.2 5 0.00021 18.2 2.5 62 431-503 12-83 (199)
304 2ce2_X GTPase HRAS; signaling 59.0 6 0.00025 17.6 2.9 51 454-504 1-58 (166)
305 2v1x_A ATP-dependent DNA helic 58.9 3 0.00012 19.9 1.3 21 694-714 487-507 (591)
306 3h2y_A GTPase family protein; 58.9 5.5 0.00023 17.9 2.7 23 457-479 163-185 (368)
307 3lda_A DNA repair protein RAD5 58.8 7.6 0.00032 16.8 5.6 135 453-636 177-329 (400)
308 2zv3_A PTH, peptidyl-tRNA hydr 58.8 7.6 0.00032 16.8 4.1 47 328-379 58-110 (115)
309 2gxg_A 146AA long hypothetical 58.7 5.5 0.00023 17.9 2.7 48 752-799 47-95 (146)
310 2j41_A Guanylate kinase; GMP, 58.5 5.3 0.00022 18.0 2.6 20 456-475 8-27 (207)
311 1u8z_A RAS-related protein RAL 58.3 5.4 0.00023 18.0 2.6 44 456-503 6-58 (168)
312 2b34_A F35G2.2, MAR1 ribonucle 58.2 5.8 0.00024 17.7 2.7 46 592-637 16-63 (199)
313 3deu_A Transcriptional regulat 57.9 7.7 0.00032 16.8 3.3 31 756-786 69-99 (166)
314 1x88_A Kinesin-like protein KI 57.8 3.4 0.00014 19.5 1.5 16 456-471 91-106 (359)
315 3e6m_A MARR family transcripti 57.6 5.2 0.00022 18.1 2.4 18 327-344 139-156 (161)
316 2fbh_A Transcriptional regulat 57.5 8 0.00034 16.7 3.4 53 746-798 42-96 (146)
317 2iwr_A Centaurin gamma 1; ANK 57.4 5.9 0.00025 17.7 2.7 52 452-503 3-60 (178)
318 3fvq_A Fe(3+) IONS import ATP- 57.4 4.7 0.0002 18.4 2.1 178 452-678 28-242 (359)
319 3g3z_A NMB1585, transcriptiona 57.4 7.2 0.0003 17.0 3.1 53 746-798 36-89 (145)
320 3lvq_E ARF-GAP with SH3 domain 57.3 3 0.00013 19.8 1.2 25 453-477 321-345 (497)
321 2oxc_A Probable ATP-dependent 57.3 4.3 0.00018 18.7 1.9 18 456-473 63-80 (230)
322 1hqc_A RUVB; extended AAA-ATPa 57.2 4.4 0.00018 18.7 2.0 24 454-477 38-61 (324)
323 2c9o_A RUVB-like 1; hexameric 57.1 3.8 0.00016 19.1 1.7 85 589-711 294-380 (456)
324 3gr4_A Pyruvate kinase isozyme 57.1 3.3 0.00014 19.6 1.3 117 509-652 236-362 (550)
325 1lj9_A Transcriptional regulat 57.1 8.1 0.00034 16.6 3.8 56 745-800 33-89 (144)
326 3k53_A Ferrous iron transport 57.1 6.9 0.00029 17.1 3.0 22 454-475 3-24 (271)
327 1ksh_A ARF-like protein 2; sma 57.0 5 0.00021 18.2 2.2 20 455-474 19-38 (186)
328 3lw7_A Adenylate kinase relate 56.9 5.9 0.00025 17.7 2.6 19 454-472 1-19 (179)
329 2j0v_A RAC-like GTP-binding pr 56.9 7.2 0.0003 17.0 3.0 21 456-476 11-31 (212)
330 1m2o_B GTP binding, GTP-bindin 56.8 6.2 0.00026 17.5 2.7 23 453-475 22-44 (190)
331 1z6r_A MLC protein; transcript 56.7 7.5 0.00032 16.9 3.1 34 329-362 122-159 (406)
332 2cdn_A Adenylate kinase; phosp 56.4 3.7 0.00015 19.2 1.5 14 456-469 22-35 (201)
333 2z0h_A DTMP kinase, thymidylat 56.4 5.2 0.00022 18.1 2.2 22 457-478 1-24 (197)
334 2i1q_A DNA repair and recombin 56.3 8.3 0.00035 16.6 7.1 47 589-635 203-259 (322)
335 1r2q_A RAS-related protein RAB 56.3 6.1 0.00026 17.6 2.6 20 457-476 9-28 (170)
336 1ku9_A Hypothetical protein MJ 56.1 8.4 0.00035 16.5 5.4 43 744-786 29-72 (152)
337 1okr_A MECI, methicillin resis 56.0 8.4 0.00035 16.5 3.5 44 745-788 14-61 (123)
338 2jaq_A Deoxyguanosine kinase; 56.0 6.2 0.00026 17.5 2.6 22 456-477 2-23 (205)
339 2h58_A Kinesin-like protein KI 55.9 3.6 0.00015 19.3 1.3 15 457-471 84-98 (330)
340 3gd7_A Fusion complex of cysti 55.8 6.5 0.00027 17.3 2.7 41 449-495 42-82 (390)
341 1gwn_A RHO-related GTP-binding 55.7 6.6 0.00028 17.3 2.7 43 457-503 31-82 (205)
342 3l0o_A Transcription terminati 55.1 8.7 0.00037 16.4 5.9 74 455-530 176-249 (427)
343 3cnl_A YLQF, putative uncharac 55.0 7.2 0.0003 17.0 2.8 21 455-475 100-120 (262)
344 1yzq_A Small GTP binding prote 54.9 7.5 0.00032 16.9 2.8 21 456-476 8-28 (170)
345 1z2a_A RAS-related protein RAB 54.8 6.7 0.00028 17.3 2.6 20 457-476 8-27 (168)
346 1goj_A Kinesin, kinesin heavy 54.8 3.9 0.00016 19.0 1.4 16 456-471 83-98 (355)
347 2vp4_A Deoxynucleoside kinase; 54.7 3.3 0.00014 19.6 1.0 19 456-474 22-40 (230)
348 2d1h_A ST1889, 109AA long hypo 54.7 8.8 0.00037 16.4 3.8 43 746-788 26-69 (109)
349 3i4p_A Transcriptional regulat 54.6 8.8 0.00037 16.4 3.9 105 596-712 20-126 (162)
350 3oop_A LIN2960 protein; protei 54.5 8.9 0.00037 16.3 5.7 54 745-798 41-95 (143)
351 3kp9_A Vkorc1/thioredoxin doma 54.4 8.9 0.00037 16.3 7.8 19 78-96 71-89 (291)
352 2nr8_A Kinesin-like protein KI 54.2 4.2 0.00018 18.8 1.5 15 457-471 107-121 (358)
353 1z6g_A Guanylate kinase; struc 53.9 7.1 0.0003 17.1 2.6 30 457-491 26-55 (218)
354 2h17_A ADP-ribosylation factor 53.9 7.5 0.00032 16.9 2.7 21 456-476 23-43 (181)
355 2qt1_A Nicotinamide riboside k 53.8 6.9 0.00029 17.2 2.5 32 458-495 25-56 (207)
356 1e69_A Chromosome segregation 53.8 4.8 0.0002 18.4 1.7 44 590-637 241-284 (322)
357 1ixz_A ATP-dependent metallopr 53.7 8.9 0.00037 16.3 3.1 33 456-495 51-83 (254)
358 3by6_A Predicted transcription 53.7 9.1 0.00038 16.3 3.8 58 736-793 6-73 (126)
359 3hu5_A Isochorismatase family 53.7 9.1 0.00038 16.3 4.4 107 592-716 10-128 (204)
360 2zej_A Dardarin, leucine-rich 53.6 5.6 0.00024 17.8 2.0 20 456-475 4-23 (184)
361 3gbj_A KIF13B protein; kinesin 53.5 4.4 0.00018 18.6 1.5 15 457-471 96-110 (354)
362 2fh5_B SR-beta, signal recogni 53.3 7.9 0.00033 16.7 2.8 22 455-476 8-29 (214)
363 3bor_A Human initiation factor 53.3 4.6 0.00019 18.5 1.6 19 456-474 69-87 (237)
364 2bme_A RAB4A, RAS-related prot 53.2 7.7 0.00032 16.8 2.7 47 457-503 13-65 (186)
365 2il1_A RAB12; G-protein, GDP, 53.2 5.6 0.00024 17.8 2.0 49 455-503 27-81 (192)
366 2blf_B SORB, sulfite\:cytochro 53.2 5.9 0.00025 17.7 2.1 23 689-711 57-79 (81)
367 1bg2_A Kinesin; motor protein, 53.1 4.3 0.00018 18.7 1.4 18 456-473 80-97 (325)
368 1lvg_A Guanylate kinase, GMP k 53.0 7.4 0.00031 16.9 2.6 20 457-476 7-26 (198)
369 1yqt_A RNAse L inhibitor; ATP- 52.6 7.6 0.00032 16.8 2.6 40 308-353 175-214 (538)
370 3iev_A GTP-binding protein ERA 52.6 6.5 0.00027 17.4 2.2 21 457-477 13-33 (308)
371 2erx_A GTP-binding protein DI- 52.5 8.3 0.00035 16.6 2.8 20 456-475 5-24 (172)
372 3gfo_A Cobalt import ATP-bindi 52.4 9.5 0.0004 16.1 3.6 47 447-498 27-73 (275)
373 3c8u_A Fructokinase; YP_612366 52.4 6.6 0.00028 17.3 2.2 24 457-480 25-48 (208)
374 2ce0_A Cytochrome C6; chloropl 52.4 6 0.00025 17.6 2.0 27 688-714 70-96 (105)
375 2fn4_A P23, RAS-related protei 52.3 8.1 0.00034 16.6 2.7 48 456-503 11-63 (181)
376 2wbe_C Bipolar kinesin KRP-130 52.2 4.5 0.00019 18.5 1.4 16 456-471 103-118 (373)
377 2e28_A Pyruvate kinase, PK; al 52.2 4.5 0.00019 18.6 1.4 21 512-532 318-338 (587)
378 2qz4_A Paraplegin; AAA+, SPG7, 52.2 9.6 0.0004 16.1 4.0 36 454-496 38-74 (262)
379 3a4m_A L-seryl-tRNA(SEC) kinas 52.2 8.1 0.00034 16.7 2.7 24 453-476 3-26 (260)
380 3cob_A Kinesin heavy chain-lik 52.0 4.8 0.0002 18.3 1.5 16 456-471 82-97 (369)
381 1t5c_A CENP-E protein, centrom 52.0 6.1 0.00025 17.6 2.0 51 664-721 231-286 (349)
382 3h0g_K DNA-directed RNA polyme 51.9 9.7 0.00041 16.1 3.1 54 473-539 43-102 (123)
383 1vrb_A Putative asparaginyl hy 51.7 4.9 0.00021 18.3 1.5 13 674-686 221-233 (342)
384 1v43_A Sugar-binding transport 51.6 7.5 0.00032 16.9 2.4 85 590-685 160-252 (372)
385 2zfi_A Kinesin-like protein KI 51.6 5.9 0.00025 17.6 1.9 17 457-473 93-109 (366)
386 3dzd_A Transcriptional regulat 51.5 7.5 0.00032 16.9 2.4 35 456-495 154-188 (368)
387 1t9h_A YLOQ, probable GTPase E 51.5 3.3 0.00014 19.6 0.6 23 457-479 176-198 (307)
388 1oxx_K GLCV, glucose, ABC tran 51.4 4.7 0.0002 18.4 1.4 162 449-659 26-218 (353)
389 3bbp_A RAB-6, RAS-related prot 51.4 8.5 0.00036 16.5 2.7 24 453-476 13-38 (211)
390 1zj6_A ADP-ribosylation factor 51.3 9.2 0.00039 16.2 2.8 20 456-475 18-37 (187)
391 1zd9_A ADP-ribosylation factor 51.3 8.3 0.00035 16.6 2.6 21 456-476 24-44 (188)
392 2j5v_A Glutamate 5-kinase; pro 51.2 3.8 0.00016 19.1 0.8 111 585-699 184-310 (367)
393 2zon_G Cytochrome C551; nitrit 50.8 7.9 0.00033 16.7 2.4 19 696-714 69-87 (87)
394 1jgs_A Multiple antibiotic res 50.7 10 0.00042 15.9 3.2 12 328-339 122-133 (138)
395 2vvg_A Kinesin-2; motor protei 50.6 5 0.00021 18.2 1.4 53 663-722 237-292 (350)
396 1zd8_A GTP:AMP phosphotransfer 50.5 5.8 0.00024 17.7 1.7 20 451-470 4-23 (227)
397 3ma8_A Pyruvate kinase; parasi 50.5 10 0.00043 15.9 4.0 49 599-652 294-351 (534)
398 1kbl_A PPDK, pyruvate phosphat 50.5 10 0.00043 15.9 3.0 25 612-636 809-835 (873)
399 3f9r_A Phosphomannomutase; try 50.5 9.3 0.00039 16.2 2.8 29 608-636 20-48 (246)
400 2f1r_A Molybdopterin-guanine d 50.4 5.6 0.00024 17.8 1.6 22 458-480 6-27 (171)
401 1z05_A Transcriptional regulat 50.4 10 0.00043 15.9 3.2 59 329-388 145-208 (429)
402 1cno_A Cytochrome C552; electr 50.2 9.2 0.00039 16.2 2.7 21 695-715 65-85 (87)
403 2exv_A Cytochrome C-551; alpha 50.0 8 0.00034 16.7 2.4 16 697-712 66-81 (82)
404 1v8k_A Kinesin-like protein KI 50.0 5.4 0.00023 18.0 1.5 17 456-472 157-173 (410)
405 2pok_A Peptidase, M20/M25/M40 49.9 10 0.00044 15.8 3.7 27 330-356 64-90 (481)
406 1ukz_A Uridylate kinase; trans 49.8 5.9 0.00025 17.7 1.7 23 452-474 13-35 (203)
407 1w1w_A Structural maintenance 49.8 7.7 0.00032 16.8 2.2 44 588-636 355-398 (430)
408 1z0f_A RAB14, member RAS oncog 49.7 9 0.00038 16.3 2.6 47 457-503 18-70 (179)
409 1p6r_A Penicillinase repressor 49.7 10 0.00044 15.8 4.1 53 744-796 12-68 (82)
410 1y8q_A Ubiquitin-like 1 activa 49.6 10 0.00044 15.8 3.7 40 456-503 38-77 (346)
411 1n6m_A Claret segregational pr 49.5 5.4 0.00023 17.9 1.4 16 456-471 138-153 (409)
412 1g6h_A High-affinity branched- 49.4 8.5 0.00036 16.5 2.4 44 447-495 26-69 (257)
413 2awn_A Maltose/maltodextrin im 49.2 7.3 0.00031 17.0 2.1 42 449-495 24-65 (381)
414 1ry6_A Internal kinesin; kines 49.1 5.5 0.00023 17.9 1.4 15 457-471 88-102 (360)
415 2rhm_A Putative kinase; ZP_007 48.8 10 0.00044 15.8 2.8 20 455-474 6-25 (193)
416 1sgw_A Putative ABC transporte 48.8 8.8 0.00037 16.4 2.4 46 445-495 22-71 (214)
417 2rep_A Kinesin-like protein KI 48.8 5.5 0.00023 17.9 1.4 55 664-722 275-333 (376)
418 1vec_A ATP-dependent RNA helic 48.8 7.7 0.00032 16.8 2.1 24 456-482 42-65 (206)
419 1ojl_A Transcriptional regulat 48.6 8.6 0.00036 16.4 2.4 40 451-495 21-62 (304)
420 1w2l_A Cytochrome oxidase subu 48.6 9.4 0.0004 16.2 2.5 20 694-713 80-99 (99)
421 2x77_A ADP-ribosylation factor 48.1 7.7 0.00032 16.8 2.0 21 456-476 24-44 (189)
422 3hdt_A Putative kinase; struct 47.9 5.1 0.00022 18.1 1.1 14 457-470 17-30 (223)
423 2xdv_A MYC-induced nuclear ant 47.8 6.1 0.00026 17.5 1.5 13 743-755 400-412 (442)
424 2efe_B Small GTP-binding prote 47.7 10 0.00042 15.9 2.6 20 457-476 15-34 (181)
425 3o38_A Short chain dehydrogena 47.7 9.7 0.00041 16.1 2.5 63 338-400 142-205 (266)
426 3ohm_A Guanine nucleotide-bind 47.5 10 0.00044 15.8 2.6 31 450-482 3-33 (327)
427 2cfx_A HTH-type transcriptiona 47.4 11 0.00047 15.6 4.5 34 597-630 23-56 (144)
428 1wms_A RAB-9, RAB9, RAS-relate 47.4 10 0.00043 15.9 2.6 21 456-476 9-29 (177)
429 3k2o_A Bifunctional arginine d 47.3 6.3 0.00026 17.5 1.5 42 670-711 255-304 (336)
430 1ek0_A Protein (GTP-binding pr 47.3 5.4 0.00023 18.0 1.1 47 457-503 6-58 (170)
431 3kkq_A RAS-related protein M-R 47.2 11 0.00048 15.6 2.8 47 453-503 15-72 (183)
432 2dpx_A GTP-binding protein RAD 47.2 10 0.00044 15.8 2.6 46 457-503 10-60 (174)
433 1g29_1 MALK, maltose transport 47.1 8.2 0.00034 16.6 2.0 85 590-685 158-250 (372)
434 3bc1_A RAS-related protein RAB 47.1 11 0.00044 15.8 2.6 20 457-476 14-33 (195)
435 1f1f_A Cytochrome C6; heme, pr 47.1 8.8 0.00037 16.4 2.2 18 697-714 69-86 (89)
436 1ny5_A Transcriptional regulat 46.9 9.8 0.00041 16.0 2.4 36 456-496 162-198 (387)
437 1u0j_A DNA replication protein 46.8 9.8 0.00041 16.0 2.4 19 457-475 107-125 (267)
438 2qgz_A Helicase loader, putati 46.8 11 0.00048 15.5 3.7 27 455-481 153-179 (308)
439 1wve_C 4-cresol dehydrogenase 46.8 11 0.00048 15.5 2.8 21 696-716 57-77 (80)
440 2frh_A SARA, staphylococcal ac 46.8 11 0.00048 15.5 5.1 57 746-802 42-101 (127)
441 2oil_A CATX-8, RAS-related pro 46.7 11 0.00044 15.8 2.5 21 456-476 27-47 (193)
442 3b6u_A Kinesin-like protein KI 46.6 6.5 0.00027 17.3 1.5 16 456-471 104-119 (372)
443 1kht_A Adenylate kinase; phosp 46.6 9.9 0.00042 16.0 2.4 22 457-478 6-27 (192)
444 1z08_A RAS-related protein RAB 46.6 11 0.00045 15.7 2.6 43 457-503 9-61 (170)
445 1ayg_A Cytochrome C-552; elect 46.5 9.8 0.00041 16.0 2.4 17 696-712 63-79 (80)
446 3niw_A Haloacid dehalogenase-l 46.3 7.6 0.00032 16.9 1.8 21 619-639 32-52 (279)
447 2zxy_A Cytochrome C552, cytoch 46.3 10 0.00042 16.0 2.4 19 694-712 68-86 (87)
448 1rz3_A Hypothetical protein rb 46.2 12 0.00049 15.4 3.5 24 454-477 21-45 (201)
449 2fg5_A RAB-22B, RAS-related pr 46.2 12 0.00049 15.4 2.9 27 456-486 25-51 (192)
450 2g6b_A RAS-related protein RAB 46.1 11 0.00047 15.6 2.6 47 457-503 13-66 (180)
451 2heh_A KIF2C protein; kinesin, 46.1 6.3 0.00027 17.4 1.3 17 456-472 137-153 (387)
452 1cyi_A Cytochrome C6, cytochro 46.1 9.3 0.00039 16.2 2.2 18 696-713 66-83 (90)
453 2gqq_A Leucine-responsive regu 45.9 5.7 0.00024 17.8 1.1 21 598-618 32-52 (163)
454 1xq6_A Unknown protein; struct 45.8 12 0.0005 15.4 3.8 43 452-499 2-45 (253)
455 3lre_A Kinesin-like protein KI 45.8 6.6 0.00028 17.3 1.4 16 456-471 108-123 (355)
456 2vl7_A XPD; helicase, unknown 45.7 8.2 0.00035 16.6 1.9 17 697-713 466-482 (540)
457 1xjc_A MOBB protein homolog; s 45.7 12 0.0005 15.4 3.3 29 452-480 2-30 (169)
458 1gdv_A Cytochrome C6; RED ALGA 45.6 9.2 0.00039 16.2 2.1 19 696-714 64-82 (85)
459 1cu1_A Protein (protease/helic 45.6 9.7 0.00041 16.1 2.2 101 590-715 297-401 (645)
460 3kb2_A SPBC2 prophage-derived 45.5 7.4 0.00031 16.9 1.6 21 454-474 1-21 (173)
461 1z0j_A RAB-22, RAS-related pro 45.5 11 0.00048 15.5 2.6 21 456-476 8-28 (170)
462 1lnz_A SPO0B-associated GTP-bi 45.5 12 0.0005 15.4 3.5 70 424-493 126-203 (342)
463 3f94_A Beta-glucosidase; (alph 45.4 12 0.00051 15.4 3.0 24 325-348 340-363 (822)
464 2iyv_A Shikimate kinase, SK; t 45.4 6.6 0.00028 17.3 1.3 16 455-470 3-18 (184)
465 2nq2_C Hypothetical ABC transp 45.3 12 0.00051 15.3 3.6 38 447-488 24-61 (253)
466 2f9l_A RAB11B, member RAS onco 45.3 11 0.00048 15.5 2.5 20 457-476 8-27 (199)
467 3ic7_A Putative transcriptiona 45.3 7.1 0.0003 17.1 1.5 31 757-787 37-67 (126)
468 1s96_A Guanylate kinase, GMP k 45.1 12 0.00049 15.5 2.6 20 456-475 18-37 (219)
469 1vg8_A RAS-related protein RAB 44.9 12 0.0005 15.4 2.6 20 457-476 11-30 (207)
470 1kgd_A CASK, peripheral plasma 44.9 12 0.0005 15.4 2.6 27 457-488 8-34 (180)
471 3pfi_A Holliday junction ATP-d 44.9 11 0.00048 15.5 2.5 24 453-476 54-77 (338)
472 2qmh_A HPR kinase/phosphorylas 44.8 3.1 0.00013 19.8 -0.4 20 456-475 36-55 (205)
473 1xwi_A SKD1 protein; VPS4B, AA 44.8 12 0.0005 15.4 2.6 176 404-667 2-189 (322)
474 2zzs_A Cytochrome C554; C-type 44.8 7.8 0.00033 16.7 1.6 16 697-712 87-102 (103)
475 2yyz_A Sugar ABC transporter, 44.7 12 0.00052 15.3 3.6 37 448-488 23-59 (359)
476 1rlm_A Phosphatase; HAD family 44.6 12 0.00052 15.3 3.2 28 612-639 24-51 (271)
477 1ji0_A ABC transporter; ATP bi 44.6 9.5 0.0004 16.1 2.0 150 448-636 26-200 (240)
478 1aky_A Adenylate kinase; ATP:A 44.5 7.6 0.00032 16.9 1.5 15 456-470 6-20 (220)
479 2b6h_A ADP-ribosylation factor 44.5 12 0.00052 15.3 2.7 20 456-475 31-50 (192)
480 2owm_A Nckin3-434, related to 44.1 7.1 0.0003 17.1 1.3 15 457-471 140-154 (443)
481 1rkq_A Hypothetical protein YI 43.9 13 0.00053 15.2 2.9 81 608-713 25-106 (282)
482 1r8s_A ADP-ribosylation factor 43.8 13 0.00053 15.2 2.8 21 456-476 2-22 (164)
483 3hb7_A Isochorismatase hydrola 43.3 13 0.00054 15.1 3.6 30 607-636 31-63 (204)
484 1ls9_A Cytochrome C6; omega lo 43.3 9.6 0.0004 16.1 1.9 18 696-713 69-86 (91)
485 2atx_A Small GTP binding prote 43.1 12 0.0005 15.4 2.3 44 456-503 20-72 (194)
486 1z47_A CYSA, putative ABC-tran 43.0 13 0.00055 15.1 3.6 190 447-680 34-251 (355)
487 2g3y_A GTP-binding protein GEM 43.0 13 0.00055 15.1 2.6 48 456-503 39-93 (211)
488 1c75_A Cytochrome C-553; heme, 42.9 12 0.00051 15.3 2.4 16 697-712 55-70 (71)
489 2e1c_A Putative HTH-type trans 42.8 13 0.00055 15.1 4.7 15 698-712 133-147 (171)
490 3ihw_A Centg3; RAS, centaurin, 42.8 13 0.00055 15.1 2.7 20 456-475 22-41 (184)
491 1xty_A PTH, peptidyl-tRNA hydr 42.7 13 0.00055 15.1 4.2 48 328-379 63-115 (120)
492 2atv_A RERG, RAS-like estrogen 42.6 13 0.00055 15.1 2.6 19 457-475 31-49 (196)
493 2pjz_A Hypothetical protein ST 42.6 13 0.00055 15.1 2.6 19 456-474 32-50 (263)
494 2iw3_A Elongation factor 3A; a 42.5 13 0.00056 15.0 2.9 44 431-474 438-481 (986)
495 3fdi_A Uncharacterized protein 42.5 8.3 0.00035 16.6 1.5 16 453-468 3-20 (201)
496 2if2_A Dephospho-COA kinase; a 42.4 13 0.00056 15.0 2.8 21 454-474 1-21 (204)
497 3k1j_A LON protease, ATP-depen 42.3 13 0.00056 15.0 4.0 68 456-531 62-129 (604)
498 2o52_A RAS-related protein RAB 42.3 13 0.00056 15.0 2.7 19 457-475 28-46 (200)
499 1cc5_A Cytochrome C5; electron 42.2 12 0.0005 15.4 2.2 15 697-711 68-82 (83)
500 1upt_A ARL1, ADP-ribosylation 42.1 13 0.00056 15.0 2.8 20 456-475 9-28 (171)
No 1
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA ATG; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=100.00 E-value=0 Score=1479.00 Aligned_cols=504 Identities=48% Similarity=0.758 Sum_probs=470.5
Q ss_pred HCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEECCC
Q ss_conf 00000002222357620366135332001245556325665457899999974248632899841044244444321478
Q gi|254780799|r 292 QNISQSNLINHGTGTFVLPSKEILSTSQSPVNQMTFSPKVMQNNACTLKSVLSDFGIQGEIVNVRPGPVITLYELEPAPG 371 (806)
Q Consensus 292 ~~~~q~~~~~~~~~~YkLPsLdLL~~~~~~~~~~~~s~eeL~~nA~lLE~tL~dFGVe~~Vv~v~pGPVVTrYEi~PApG 371 (806)
.+..+.+.......+|+|||++||+.+.. +....|+++|++++++|++||++|||+++|+++.+|||||||||+|++|
T Consensus 53 ~~~~~~~l~~~~~~~y~lP~~~LL~~~~~--~~~~~~~~~l~~~a~~Le~tL~~fgI~~~V~~~~~GP~vtr~el~p~~G 130 (574)
T 2iut_A 53 LKEKQAPLFVDTAVEGTLPPLSLLDPAEV--KQKSYSPESLEAMSRLLEIKLKEFGVEVSVDSVHPGPVITRFEIQPAAG 130 (574)
T ss_dssp -----------------CCCGGGSCCCCC--CCCCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEECSSEEEEEECCCTT
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEECCC
T ss_conf 32224444457788889989778389875--6667899999999999999999779737999404698589999987999
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCEEEEEECCCCCCEEEEHHHCCCHHHHHCCCCCHHHCCCCCCCCEEEEE
Q ss_conf 639999978899998863001210-0038861255530245662387342307213430221000210456666667854
Q gi|254780799|r 372 IKSSRIIGLSDDIARSMSAISARV-AVIPRRNAIGIELPNDIRETVMLRDLIVSRVFEKNQCDLAINLGKSIEGKPIIAD 450 (806)
Q Consensus 372 VKvSKI~nLadDIA~aLsa~svRI-apIPGK~~VGIEiPN~~r~~V~lreil~s~~f~~s~~~L~iaLGKdI~G~pvv~D 450 (806)
||||||+||+||||++|++.|||| ||||||++|||||||.+|++|+|+|++++++|++++++||++||||++|+|++.|
T Consensus 131 vkvskI~~L~~DLa~aL~a~svRI~apipGk~~vgievPn~~~~~V~l~~~~~~~~~~~~~~~l~v~lG~d~~G~~~~~d 210 (574)
T 2iut_A 131 VKVSRISNLAKDLARSLAVISVRVVEVIPGKTTVGIEIPNEDRQMVRFSEVLSSPEYDEHKSTVPLALGHDIGGRPIITD 210 (574)
T ss_dssp CCHHHHHHTHHHHHHHHTCSCCEEESCCTTSSCEEEEEECTTCCCCBHHHHHTSHHHHTCCCSSEEEEEEETTSCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCEEEHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEEE
T ss_conf 75899987889999986256526873058870589989889873665589663500024677437887752578666510
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 10020235530477406799999999999829957847888523100111027703431223343045668999999999
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEM 530 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EM 530 (806)
|+||||||||||||||||||+|+||+||||+++|+||||+||||||+||+.|++||||++|||||+++|+.+|+|+|.||
T Consensus 211 l~k~PHlLIAG~TGSGKSv~l~siI~SLl~~~sP~ev~liLIDpK~~el~~y~~iPHl~~pVitd~~~a~~~L~~~v~EM 290 (574)
T 2iut_A 211 LAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEM 290 (574)
T ss_dssp GGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSSHHHHTTTTCTTBSSSCBCCHHHHHHHHHHHHHHH
T ss_pred HHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 41288189971688756199999999999858954617999636622204137998555322276799999999999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHH
Q ss_conf 99999998708996899999999887447866775446776545432223322323469868776344688887321005
Q gi|254780799|r 531 EERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDI 610 (806)
Q Consensus 531 e~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~~v 610 (806)
||||++|+++|||||.+||+|+.+..+.|.+..++.+...+++. +...+++||||||||||||||||+++++|
T Consensus 291 erRy~ll~~~gvrnI~~yn~k~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~lP~IVviIDE~AdLm~~~~~ev 363 (574)
T 2iut_A 291 ERRYRLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDD-------EPPQLSTLPTIVVVVDEFADMMMIVGKKV 363 (574)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHTTCCCBCTTCCCCSTTC-------CCCBCCCCCEEEEEESCCTTHHHHTCHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-------CCCCCCCCCEEEEEEHHHHHHHHHHHHHH
T ss_conf 99999999838631899999998776427865674335667433-------56544567569986387899987646889
Q ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHCCCCCHHHHCCCCCEEEECCC-CCE
Q ss_conf 8899999986641423799996577753554355411025158764586642123388645786588754773689-832
Q gi|254780799|r 611 ESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQGAEQLLGQGDMLYMTGG-GRV 689 (806)
Q Consensus 611 e~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtild~~gae~Llg~gdml~~~~~-~~~ 689 (806)
|++|+||||||||+||||||||||||+|||||+||||||+||||+|+|++|||||||++|||+|+|+|||||+++| +.|
T Consensus 364 e~~i~rlAq~gRA~GIHLIlATQRPs~dvItg~IKaN~p~RIaf~v~s~~dSr~ILd~~GAE~Llg~Gdml~~~~g~~~~ 443 (574)
T 2iut_A 364 EELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQGGAEQLLGHGDMLYLPPGTGLP 443 (574)
T ss_dssp HHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHSSSCGGGCCSTTEEEEECTTCSSC
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCEEEEEECCHHHHCCCCCCCCHHHCCCCCCEEEECCCCCEE
T ss_conf 99999999999974988998406776561046698627753899868743303113778976778999868962898345
Q ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEHH
Q ss_conf 58883348988999999999712897421100124556--------6677888887777038999999996598500014
Q gi|254780799|r 690 QRIHGPFVSDIEVEKVVSHLKTQGEAKYIDIKDKILLN--------EEMRFSENSSVADDLYKQAVDIVLRDNKASISYI 761 (806)
Q Consensus 690 ~r~~g~~v~~~ev~~v~~~~~~q~~~~y~~~~~~~~~~--------~~~~~~~~~~~~d~l~~~a~~~v~~~~~~s~s~l 761 (806)
+|+|||||||+||++||+|||+|++|+|.+++.....+ +++.++++.++.||||+||+++|+++|+||||+|
T Consensus 444 ~r~q~afvsd~ei~~vv~~~k~q~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~a~~~v~~~~~~S~s~l 523 (574)
T 2iut_A 444 IRVHGAFVSDDEVHRVVEAWKLRGAPDYIEDILAGVDEGGGGGGSFDGGDGSGEGSEDDPLYDEAVRFVTESRRASISAV 523 (574)
T ss_dssp EEEEECBCCHHHHHHHHHHHHTTCCCCCCTTSCC----------------------------------------------
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHH
T ss_conf 78741407889999999999863999763111013432000124567777777876666799999999998297429999
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCCEEEECHHHHH
Q ss_conf 2220011778999999999779868022788726731712530
Q gi|254780799|r 762 QRRLGIGYNRAASIIENMEEKGVIGPASSTGKREILISSMEEC 804 (806)
Q Consensus 762 qr~~~igy~raar~~~~~e~~giv~~~~g~~~r~vl~~~~~~~ 804 (806)
||||||||||||||||+||++|||||++||||||||++++.++
T Consensus 524 qr~~~igy~raar~id~le~~givg~~~g~~~r~vl~~~~~~~ 566 (574)
T 2iut_A 524 QRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPVRD 566 (574)
T ss_dssp -------------------------------------------
T ss_pred HHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCC
T ss_conf 8612465457899999999677988766897871727998510
No 2
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=100.00 E-value=0 Score=1435.31 Aligned_cols=491 Identities=49% Similarity=0.750 Sum_probs=465.1
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 76203661353320012455563256654578999999742486328998410442444443214786399999788999
Q gi|254780799|r 305 GTFVLPSKEILSTSQSPVNQMTFSPKVMQNNACTLKSVLSDFGIQGEIVNVRPGPVITLYELEPAPGIKSSRIIGLSDDI 384 (806)
Q Consensus 305 ~~YkLPsLdLL~~~~~~~~~~~~s~eeL~~nA~lLE~tL~dFGVe~~Vv~v~pGPVVTrYEi~PApGVKvSKI~nLadDI 384 (806)
.+|+|||++||+++.. +....|+++++++++.|++||++|||+|+|+++++|||||||||+|+||||||||+||+|||
T Consensus 19 ~~y~lP~~~LL~~~~~--~~~~~~~~el~~~a~~L~~~L~~fgI~~~v~~~~~GP~vt~fel~p~~Gvkv~kI~~l~~DL 96 (512)
T 2ius_A 19 PTTPLPSLDLLTPPPS--EVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDL 96 (512)
T ss_dssp ----CCCGGGSCCC----------CHHHHHHHHHHHHHHTTTTCCEEEEEEEECSSEEEEEEEECTTCCTHHHHTTHHHH
T ss_pred CCCCCCCHHHCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCEEEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999989778488875--66778999999999999999997796289982024987999999708998699998789999
Q ss_pred HHHHHHCCCCC-CCCCCCCEEEEEECCCCCCEEEEHHHCCCHHHHHCCCCCHHHCCCCCCCCEEEEECCCCCEEEEEECC
Q ss_conf 98863001210-00388612555302456623873423072134302210002104566666678541002023553047
Q gi|254780799|r 385 ARSMSAISARV-AVIPRRNAIGIELPNDIRETVMLRDLIVSRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTT 463 (806)
Q Consensus 385 A~aLsa~svRI-apIPGK~~VGIEiPN~~r~~V~lreil~s~~f~~s~~~L~iaLGKdI~G~pvv~DLakMPHLLIAGtT 463 (806)
|++|+|.|||| ||||||++|||||||.+|++|+|+|++++.+|.+++++||++||||+.|+|++.||+||||+||||||
T Consensus 97 A~aL~a~~vRi~apipGk~~VgIEvPn~~~~~v~l~~~~~~~~~~~~~~~l~v~lG~d~~G~~v~~Dl~~~PHlLIAG~T 176 (512)
T 2ius_A 97 ARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTT 176 (512)
T ss_dssp HHHTTCSCCEEESCCTTSSSEEEEEECSSCCCCBHHHHHTSHHHHTCCCTTEEEEEEETTSCEEEEEGGGSCSEEEECCT
T ss_pred HHHHCCCCEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEHHHCCCEEEECCC
T ss_conf 99833785268623799752788788875542218988765420145663378750234566676067558875886267
Q ss_pred CCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 74067999999999998299578478885231001110277034312233430456689999999999999999870899
Q gi|254780799|r 464 GSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVR 543 (806)
Q Consensus 464 GSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY~l~a~~~vR 543 (806)
|||||||+|+||+||||+++|++|||+|||||++||+.|++||||++||+||+++|..+|+|+|+||||||++|+++|||
T Consensus 177 GSGKSv~l~siI~SLl~~~~P~ev~liLiDpK~~el~~y~~iPHl~~~V~td~~~a~~~L~~lv~EMerRy~ll~~~gvr 256 (512)
T 2ius_A 177 GSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVR 256 (512)
T ss_dssp TSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCCCHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 88564999999999998579757379995488611111058985212566268999999999999999999999981883
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 68999999998874478667754467765454322233223234698687763446888873210058899999986641
Q gi|254780799|r 544 NIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARA 623 (806)
Q Consensus 544 ni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara 623 (806)
||.+||+++.++....+++.++.+...|.. ..+.+.+++||||||||||||||||++++++|++|+||||||||
T Consensus 257 ni~~yn~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~lP~IvviIDE~Adlm~~~~~eve~~i~riaq~gRA 330 (512)
T 2ius_A 257 NLAGYNEKIAEADRMMRPIPDPYWKPGDSM------DAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARA 330 (512)
T ss_dssp SHHHHHHHHHHHHHTTCCCBCTTC---------------CCBCCCCCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCC------CCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 267788999877740587666545787642------23455556886599995577899876258899999999999885
Q ss_pred CCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHCCCCCHHHHCCCCCEEEECCC-CCEEEEEECCCCHHHH
Q ss_conf 423799996577753554355411025158764586642123388645786588754773689-8325888334898899
Q gi|254780799|r 624 SGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQGAEQLLGQGDMLYMTGG-GRVQRIHGPFVSDIEV 702 (806)
Q Consensus 624 ~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtild~~gae~Llg~gdml~~~~~-~~~~r~~g~~v~~~ev 702 (806)
+|||||+||||||+|||||+||||||+||||+|+|++|||||||++|||+|||+|||||+++| ++|+|+|||||||+||
T Consensus 331 ~GIHLIlATQRPs~dvitg~IkaN~p~RIafrV~s~~dSr~ILd~~gAe~Llg~gdml~~~~~~~~~~r~q~a~vs~~ei 410 (512)
T 2ius_A 331 AGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEV 410 (512)
T ss_dssp GTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHSSSCGGGSCSTTEEEEECTTCSSCEEEEECBCCHHHH
T ss_pred CCCEEEEEECCCCCCCCCHHHHHHCCCEEEEEECCCCCCHHHCCCCCHHHHCCCCCEEEECCCCCCCCEEECCCCCHHHH
T ss_conf 59279987358875633066885166047888666112212128878888277998378427678632002553688999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999712897421100124556667788-888777703899999999659850001422200117789999999997
Q gi|254780799|r 703 EKVVSHLKTQGEAKYIDIKDKILLNEEMRFS-ENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEE 781 (806)
Q Consensus 703 ~~v~~~~~~q~~~~y~~~~~~~~~~~~~~~~-~~~~~~d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~ 781 (806)
++||+|||+|++|+|.+++......++..++ .+.++.||||+||+++|+++||||||+|||||||||||||||||+||+
T Consensus 411 ~~vv~~ik~q~~p~y~~~~~~~~~~~~~~~~~~~~~~~D~l~~~a~~~v~~~~~~S~S~lQRrl~IGYnRAariid~LE~ 490 (512)
T 2ius_A 411 HAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEA 490 (512)
T ss_dssp HHHHHHHHTTCCCCCCTTSCC-----------------------------------------------------------
T ss_pred HHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999998628976211034555556677777777766779999999999709671999986514865799999999997
Q ss_pred CCCCCHHHCCCCCEEEECHHHH
Q ss_conf 7986802278872673171253
Q gi|254780799|r 782 KGVIGPASSTGKREILISSMEE 803 (806)
Q Consensus 782 ~giv~~~~g~~~r~vl~~~~~~ 803 (806)
+|||||++||||||||+++|.|
T Consensus 491 ~GiVgp~~gsk~ReVLv~~~~~ 512 (512)
T 2ius_A 491 QGIVSEQGHNGNREVLAPPPFD 512 (512)
T ss_dssp ----------------------
T ss_pred CCCCCCCCCCCCCEEECCCCCC
T ss_conf 7788875689898381899998
No 3
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, alternative splicing, coiled coil, cytoplasm, nucleus, protein transport; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=100.00 E-value=0 Score=381.87 Aligned_cols=194 Identities=12% Similarity=0.070 Sum_probs=176.1
Q ss_pred EEHHHHHHH--HHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCC---CHHHCCC
Q ss_conf 763446888--87321005889999998664142379999657775355435541102515876458664---2123388
Q gi|254780799|r 594 VVIDEMADL--MMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKID---SRTILGE 668 (806)
Q Consensus 594 viiDElaDl--mm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~d---Srtild~ 668 (806)
.++|||||| ||+++||+|.+|+||||||||+|||++.|||||++||+||+||||+|||++|+|+|++| ||+|+|.
T Consensus 5 ~i~~a~~DL~~lM~~ake~~~l~~~la~~~r~~~~~~~~~~~~~~~~~~t~lg~~~~~tr~~f~~~~~~~~eLsr~I~d~ 84 (218)
T 3cuq_B 5 NISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKSYLLSMGIANPVTRETYGSGTQYHMQLAKQLAGI 84 (218)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHGGGCC----------CCSHHHHHHHHHHTCCCHHHHTTSSCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHH
T ss_conf 79999997999999999999999999999884379875000226899998608777663776545207649999999999
Q ss_pred CCHHHHCCCCCEEEECCCC-CEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 6457865887547736898-325888334898899999999971289742110012455666778888877770389999
Q gi|254780799|r 669 QGAEQLLGQGDMLYMTGGG-RVQRIHGPFVSDIEVEKVVSHLKTQGEAKYIDIKDKILLNEEMRFSENSSVADDLYKQAV 747 (806)
Q Consensus 669 ~gae~Llg~gdml~~~~~~-~~~r~~g~~v~~~ev~~v~~~~~~q~~~~y~~~~~~~~~~~~~~~~~~~~~~d~l~~~a~ 747 (806)
.||++++|.|||+|.+.+. .+.|.|++|||++||.++|++|+.|+.|.|+..+..... .......+.|++|++|+
T Consensus 85 ~~a~~~~~gG~m~l~~~~~~~nr~r~~~lVS~~di~~av~~l~~lg~~~~l~~~~sg~~----~~~s~~~~~d~~~~~~l 160 (218)
T 3cuq_B 85 LQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFDSGVM----VIELQSHKEEEMVASAL 160 (218)
T ss_dssp HHHHHHHTTSEEEHHHHHHHHHHTCSSSCCCHHHHHHHHHTTTTTTCSEEEEECTTSBE----EEEETTCCGGGGHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC----CCCCCCCCHHHHHHHHH
T ss_conf 97898568980673555342233367886799999999999996399827763035543----44678720588999999
Q ss_pred HHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCC
Q ss_conf 99996598500014222001177899999999977986802278
Q gi|254780799|r 748 DIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASST 791 (806)
Q Consensus 748 ~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g~ 791 (806)
+++.+.+++|+|+|||+|+||||||+|+||+||++|+|.--++.
T Consensus 161 ~~v~~~~~~S~s~Lqr~l~i~~~rA~~~Ld~le~~Giv~~D~~~ 204 (218)
T 3cuq_B 161 ETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDDSV 204 (218)
T ss_dssp HHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEESS
T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 99987799489999999796999999999999978938987787
No 4
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=99.91 E-value=3.3e-25 Score=206.81 Aligned_cols=71 Identities=45% Similarity=0.677 Sum_probs=66.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCCEEEECHHHH
Q ss_conf 88887777038999999996598500014222001177899999999977986802278872673171253
Q gi|254780799|r 733 SENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGKREILISSMEE 803 (806)
Q Consensus 733 ~~~~~~~d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g~~~r~vl~~~~~~ 803 (806)
++++++.|+||++|+++|+++|++|||+|||||||||||||||||+||++|||||++|+||||||+++.-+
T Consensus 2 ~~~~~~~D~l~~~a~~~V~~~~kaS~S~lQR~l~IGYnRAariid~LE~~GiVsp~~g~~~ReVLv~~~~~ 72 (73)
T 2ve8_A 2 SGEGSEDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPVR 72 (73)
T ss_dssp -----CCCTTHHHHHHHHHHHCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSBCCCCTTSCCCBCSCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCC
T ss_conf 98877564899999999998087458999999730507999999999987886887789888673899998
No 5
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=98.96 E-value=2.4e-08 Score=80.49 Aligned_cols=63 Identities=25% Similarity=0.401 Sum_probs=47.1
Q ss_pred CEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC-CCCC-----CHHHHHCCCCEEEEEECC
Q ss_conf 86877634468888732100588999999866414237999965777-5355-----435541102515876458
Q gi|254780799|r 590 PYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS-VDVI-----TGTIKANFPTRISFQVSS 658 (806)
Q Consensus 590 p~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs-vdvi-----tg~ikan~p~riaf~v~s 658 (806)
+.+++++||++-|. + + ..+.++...+|-.|+.+++|||.|+ .+-+ .-.|-+|..++|-|++.+
T Consensus 279 ~~~~~~lDE~~~l~----~-~-~~~~~~l~~~Rk~G~~~~l~~Qs~~Ql~~~yG~~~a~~i~~n~~t~i~~~~~~ 347 (437)
T 1e9r_A 279 RRLWLFIDELASLE----K-L-ASLADALTKGRKAGLRVVAGLQSTSQLDDVYGVKEAQTLRASFRSLVVLGGSR 347 (437)
T ss_dssp CCEEEEESCGGGSC----B-C-SSHHHHHHHCTTTTEEEEEEESCHHHHHHHHCHHHHHHHHTTCCEEEEEECCT
T ss_pred CEEEEEECHHHHHC----C-C-HHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 70799710044425----6-3-87999999850789458999567999999877889999997478779961799
No 6
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.90 E-value=0.0024 Score=43.07 Aligned_cols=145 Identities=14% Similarity=0.168 Sum_probs=72.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23553047740679999999999982995784788852310011102770343122334304566899999999999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQ 535 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY~ 535 (806)
-.+|+|.||+|||-.+..|.+.+..+. ..+..++.+=|-.-.....+-+..+.+ +.......++.-.+.++.++
T Consensus 244 l~vi~g~~g~GKSt~~~~la~~~a~~~---g~~vl~~s~E~~~~~~~~r~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 317 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTAM---GKKVGLAMLEESVEETAEDLIGLHNRV---RLRQSDSLKREIIENGKFDQ 317 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTTS---CCCEEEEESSSCHHHHHHHHHHHHTTS---CCTTCHHHHHHHHHTSHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCCCCCCCCCHHHHHHHHHHHHHCC---CHHHCCCCCCHHHHHHHHHH
T ss_conf 689863101338999999997454403---983010554578999999999998599---83440133100468999999
Q ss_pred HHHH------------CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHH
Q ss_conf 9987------------0899689999999988744786677544677654543222332232346986877634468888
Q gi|254780799|r 536 KMSK------------IGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLM 603 (806)
Q Consensus 536 l~a~------------~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlm 603 (806)
.+.. .+.-+++..-++++.+... ..--+||||=+..++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~~~~------------------------------~~~~~vvID~l~~l~ 367 (503)
T 1q57_A 318 WFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSG------------------------------LGCDVIILDHISIVV 367 (503)
T ss_dssp HHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHT------------------------------TCCSEEEEECTTCCC
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHH------------------------------CCCEEEEECHHHCCC
T ss_conf 99987513621243266532388999999999983------------------------------695489971243025
Q ss_pred HHCC-----CHHHHHHHHHHHHHHHCCEEEEEEEC--CCC
Q ss_conf 7321-----00588999999866414237999965--777
Q gi|254780799|r 604 MVAR-----KDIESAVQRLAQMARASGIHVIMATQ--RPS 636 (806)
Q Consensus 604 m~~~-----~~ve~~i~rlaq~ara~GiHli~aTq--rPs 636 (806)
-..+ .++...+.+|.++|+.-++|.|+..| ||+
T Consensus 368 ~~~~~~~~~~~~~~~~~~Lk~lA~~~~v~Vi~vahlnr~~ 407 (503)
T 1q57_A 368 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPD 407 (503)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCC
T ss_conf 7775412788999999999999998397499995357421
No 7
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.50 E-value=0.044 Score=33.58 Aligned_cols=42 Identities=17% Similarity=0.431 Sum_probs=31.0
Q ss_pred EEEHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHCCEEEEEEECC
Q ss_conf 776344688887321-----005889999998664142379999657
Q gi|254780799|r 593 VVVIDEMADLMMVAR-----KDIESAVQRLAQMARASGIHVIMATQR 634 (806)
Q Consensus 593 vviiDElaDlmm~~~-----~~ve~~i~rlaq~ara~GiHli~aTqr 634 (806)
+||||=+--+-...+ .++.....+|.++|+--++|.|+.+|=
T Consensus 150 ~ivID~l~~l~~~~~~~~~~~~~~~~~~~Lk~la~~~~v~vi~~~q~ 196 (296)
T 1cr0_A 150 VIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 196 (296)
T ss_dssp EEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred EEEEECCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 89994430002688764047889999999999999738828999604
No 8
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.40 E-value=0.01 Score=38.42 Aligned_cols=139 Identities=18% Similarity=0.171 Sum_probs=73.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCC----------CCH--HHHCCC--CC--CHHHHH
Q ss_conf 35530477406799999999999829957847888523100111027----------703--431223--34--304566
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYD----------GIP--NLLTPV--VT--NPQKAV 520 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~----------~iP--HLl~pV--vT--d~~kA~ 520 (806)
..|||.||+|||.+...|...+.-... +-+++ -+|++..+ ++| |+.++- .| |..+..
T Consensus 200 ~viaarpg~GKT~~al~la~~~~~~g~----~v~~~---SlEMs~~el~~R~~s~~s~v~~~~i~~~~~~~~~~e~~~~~ 272 (444)
T 3bgw_A 200 VLIAARPSMGKTAFALKQAKNMSDNDD----VVNLH---SLEMGKKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLS 272 (444)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTC----EEEEE---CSSSCTTHHHHHHHHHHSCCCHHHHHHTGGGTCCSCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCC----CHHCC---HHHCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHH
T ss_conf 998507998747999999997531255----13105---14178879999999985489867776301223489999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHH
Q ss_conf 89999999999999999870899689999999988744786677544677654543222332232346986877634468
Q gi|254780799|r 521 TVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMA 600 (806)
Q Consensus 521 ~aL~w~V~EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDEla 600 (806)
.+++ ++....-.+-...-.++.....+++....+- ..--.|||||=+-
T Consensus 273 ~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------------------------~~~~~~vviDyl~ 320 (444)
T 3bgw_A 273 MAIG----EISNSNINIFDKAGQSVNYIWSKTRQTKRKN----------------------------PGKRVIVMIDYLQ 320 (444)
T ss_dssp HHHH----HHHTSCEEEECCSSCBHHHHHHHHHHHHHHS----------------------------CSSCEEEEEECST
T ss_pred HHHH----HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC----------------------------CCCCCEEEEEHHH
T ss_conf 9987----8862876345787654699999998776504----------------------------8976389960765
Q ss_pred HHHHHCCC------HHHHHHHHHHHHHHHCCEEEEEEECCC
Q ss_conf 88873210------058899999986641423799996577
Q gi|254780799|r 601 DLMMVARK------DIESAVQRLAQMARASGIHVIMATQRP 635 (806)
Q Consensus 601 Dlmm~~~~------~ve~~i~rlaq~ara~GiHli~aTqrP 635 (806)
||...++ +|+.-..+|-++|+--+||.|+..|-.
T Consensus 321 -l~~~~~~~~~~~~~~~~i~~~Lk~lA~e~~v~vi~lsQln 360 (444)
T 3bgw_A 321 -LLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLS 360 (444)
T ss_dssp -TSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred -HCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf -4367888878999999999999999998099689963368
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.24 E-value=0.079 Score=31.72 Aligned_cols=157 Identities=20% Similarity=0.293 Sum_probs=82.1
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHH---CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 20235530477406799999999999829957847888523100111027703431---223343045668999999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLL---TPVVTNPQKAVTVLKWLVCEM 530 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl---~pVvTd~~kA~~aL~w~V~EM 530 (806)
.+|+||-|-.|+||+-.+..+.-.| .+....+++++-++-.... +.|...-+.+ .+-.....
T Consensus 45 ~~~ili~GppGtGKT~l~~~la~~l-~~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------- 109 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL-HKKFLGKFKHVYINTRQID-TPYRVLADLLESLDVKVPFTG------------- 109 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH-HHHTCSSCEEEEEEHHHHC-SHHHHHHHHTTTTSCCCCSSS-------------
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHH-HHHCCCCCEEEEEEHHHHC-CHHHHHHHHHHHHCCCCCHHH-------------
T ss_conf 9808998799881999999999998-7524898528996015633-417788988764110000246-------------
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHH
Q ss_conf 99999998708996899999999887447866775446776545432223322323469868776344688887321005
Q gi|254780799|r 531 EERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDI 610 (806)
Q Consensus 531 e~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~~v 610 (806)
.+.....++...... +..-.+++++||...++.....+.
T Consensus 110 ------------~~~~~~~~~~~~~l~-----------------------------~~~~~~~~ilde~d~~~~~~~~~~ 148 (386)
T 2qby_A 110 ------------LSIAELYRRLVKAVR-----------------------------DYGSQVVIVLDEIDAFVKKYNDDI 148 (386)
T ss_dssp ------------CCHHHHHHHHHHHHH-----------------------------TCCSCEEEEEETHHHHHHSSCSTH
T ss_pred ------------HHHHHHHHHHHHHHH-----------------------------HCCCCCEEEEECHHHHHHHHHHHH
T ss_conf ------------569999999998763-----------------------------126632143200112310211369
Q ss_pred HHHHHHHHHHHHHCCEEEEEEECCCC-CCCCCHHHHHCC-CCEEEEEECCCCCCHHHC
Q ss_conf 88999999866414237999965777-535543554110-251587645866421233
Q gi|254780799|r 611 ESAVQRLAQMARASGIHVIMATQRPS-VDVITGTIKANF-PTRISFQVSSKIDSRTIL 666 (806)
Q Consensus 611 e~~i~rlaq~ara~GiHli~aTqrPs-vdvitg~ikan~-p~riaf~v~s~~dSrtil 666 (806)
.....++....+-..+.+|..+..+. .+-+..-++.-+ +.+|-|.--+.-+-.-|+
T Consensus 149 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~sr~~~~~i~~~~~~~~e~~~Il 206 (386)
T 2qby_A 149 LYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDIL 206 (386)
T ss_dssp HHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 9998762432467746999734761334331402341046651123898999999999
No 10
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.04 E-value=0.022 Score=35.85 Aligned_cols=44 Identities=30% Similarity=0.419 Sum_probs=32.1
Q ss_pred EEEEEHHHHHHHHHHCC------CHHHHHHHHHHHHHHHCCEEEEEEECCC
Q ss_conf 68776344688887321------0058899999986641423799996577
Q gi|254780799|r 591 YIVVVIDEMADLMMVAR------KDIESAVQRLAQMARASGIHVIMATQRP 635 (806)
Q Consensus 591 ~ivviiDElaDlmm~~~------~~ve~~i~rlaq~ara~GiHli~aTqrP 635 (806)
..|||||=+. +|...+ ..+.....+|.++|+-.+||.|+++|-.
T Consensus 182 ~~viviD~l~-~~~~~~~~~~~~~~i~~i~~~Lk~lA~~~~i~ii~lsQln 231 (315)
T 3bh0_A 182 RVIVMIDYLQ-LLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLS 231 (315)
T ss_dssp CEEEEEECGG-GSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred CCHHHHHHHH-HHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 5210577987-5036777878999999999999999997399789997536
No 11
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.97 E-value=0.1 Score=30.82 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=74.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHH-------HHHCCCCH--HHHCCCCCCHHHHHHHHHHHH
Q ss_conf 355304774067999999999998299578478885231001-------11027703--431223343045668999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLE-------LSVYDGIP--NLLTPVVTNPQKAVTVLKWLV 527 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vE-------ls~Y~~iP--HLl~pVvTd~~kA~~aL~w~V 527 (806)
..|||.||.|||-....+...+.-+.. .+..++..=|=+ ++..-+|| ++..+-.++ .....+..+.
T Consensus 203 ~vi~a~pg~GKT~~~~~~a~~~a~~~g---~~v~~~slEm~~~~~~~r~~a~~~~i~~~~~~~~~~~~--~~~~~~~~~~ 277 (444)
T 2q6t_A 203 NIIAARPAMGKTAFALTIAQNAALKEG---VGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLTD--RDFSRLVDVA 277 (444)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTC---CCEEEEESSSCHHHHHHHHHHHHTTCCTTTCCGGGCCH--HHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCC---CEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCH--HHHHHHHHHH
T ss_conf 999830466621888878999999779---94999858899999999999875288821222377627--7899999999
Q ss_pred HHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHC
Q ss_conf 9999999999-870899689999999988744786677544677654543222332232346986877634468888732
Q gi|254780799|r 528 CEMEERYQKM-SKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVA 606 (806)
Q Consensus 528 ~EMe~RY~l~-a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~ 606 (806)
.++.+ +.++ -...-.+++.-..+++..+..+ ..=+||||=+ .||...
T Consensus 278 ~~l~~-~~l~i~d~~~~t~~~i~~~~~~~~~~~------------------------------~~~~vviDyl-~~~~~~ 325 (444)
T 2q6t_A 278 SRLSE-APIYIDDTPDLTLMEVRARARRLVSQN------------------------------QVGLIIIDYL-QLMSGP 325 (444)
T ss_dssp HHHHT-SCEEEECCTTCBHHHHHHHHHHHHHHS------------------------------CCCEEEEECG-GGCBCC
T ss_pred HHHHC-CCEEEECCCCCCHHHHHHHHHHHHHCC------------------------------CCCEEEEEEH-HHHCCC
T ss_conf 99863-987996899999999999999866514------------------------------6785999624-542145
Q ss_pred C---------CHHHHHHHHHHHHHHHCCEEEEEEECCC
Q ss_conf 1---------0058899999986641423799996577
Q gi|254780799|r 607 R---------KDIESAVQRLAQMARASGIHVIMATQRP 635 (806)
Q Consensus 607 ~---------~~ve~~i~rlaq~ara~GiHli~aTqrP 635 (806)
. .+|.....+|.++|+--+||.|++.|-.
T Consensus 326 ~~~~~~~~~~~~i~~i~~~Lk~lA~~~~i~vi~~sqln 363 (444)
T 2q6t_A 326 GSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLS 363 (444)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_conf 56776420999999999999999997398799985148
No 12
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, X-RAY diffraction, structural genomics, NPPSFA; HET: ADP; 2.00A {Pyrococcus horikoshii OT3}
Probab=95.89 E-value=0.068 Score=32.18 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=41.4
Q ss_pred EEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCC
Q ss_conf 687763446888873210058899999986641423799996577753
Q gi|254780799|r 591 YIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVD 638 (806)
Q Consensus 591 ~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvd 638 (806)
.-++++|.+.++......+....+..+.+.++.-|++.++..|...-+
T Consensus 129 ~~~~vid~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~ 176 (247)
T 2dr3_A 129 AKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGE 176 (247)
T ss_dssp CCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC---
T ss_pred CCEEEECCHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC
T ss_conf 527998146765001546778998999999985597799998614787
No 13
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.86 E-value=0.0026 Score=42.77 Aligned_cols=25 Identities=44% Similarity=0.792 Sum_probs=20.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 2355304774067999999999998
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLY 480 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLy 480 (806)
-+||+|.||||||-.||+++=.-+.
T Consensus 39 nIlVvG~tgsGKSTlIN~Llg~~i~ 63 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999889979399999998688777
No 14
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.85 E-value=0.0032 Score=42.08 Aligned_cols=61 Identities=26% Similarity=0.492 Sum_probs=38.9
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEEE-ECCCCCCEEEEHHHCCCHHHHHCCCCCHHHCCCCCCCCEEEEECCCCC-EEE
Q ss_conf 899998863001210003886125553-024566238734230721343022100021045666666785410020-235
Q gi|254780799|r 381 SDDIARSMSAISARVAVIPRRNAIGIE-LPNDIRETVMLRDLIVSRVFEKNQCDLAINLGKSIEGKPIIADLARMP-HLL 458 (806)
Q Consensus 381 adDIA~aLsa~svRIapIPGK~~VGIE-iPN~~r~~V~lreil~s~~f~~s~~~L~iaLGKdI~G~pvv~DLakMP-HLL 458 (806)
+.||||... .+.|-.|..| +||.+ +||..+ |-.+.+ -|+ -+|
T Consensus 3 ~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~----------------------------~~~~~IL 46 (427)
T 2qag_B 3 ATDIARQVG-EGCRTVPLAG--HVGFDSLPDQLV-----NKSVSQ----------------------------GFCFNIL 46 (427)
T ss_dssp ---------------CCCCC--CC-CC--CHHHH-----HHSCC-----------------------------CCEEEEE
T ss_pred HHHHHHHCC-CCCCEEECCC--CCCCCCCHHHHH-----HHHHHC----------------------------CCEEEEE
T ss_conf 576656317-8853320467--315144488899-----999626----------------------------8757999
Q ss_pred EEECCCCHHHHHHHHHHHH
Q ss_conf 5304774067999999999
Q gi|254780799|r 459 IAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 459 IAGtTGSGKSV~iN~iI~S 477 (806)
|.|.||||||-.||+|.-+
T Consensus 47 vvG~tGsGKST~iNsL~~~ 65 (427)
T 2qag_B 47 CVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EECSTTSSSHHHHHHHHTS
T ss_pred EECCCCCCHHHHHHHHHCC
T ss_conf 9889999799999998499
No 15
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.82 E-value=0.0029 Score=42.41 Aligned_cols=25 Identities=44% Similarity=0.792 Sum_probs=21.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 2355304774067999999999998
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLY 480 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLy 480 (806)
-+||+|.||+|||-.||||+-+-++
T Consensus 33 ~Ilv~G~tG~GKSt~iNsl~~~~~~ 57 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDLY 57 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999778999399999999688655
No 16
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolase/protein binding complex; 2.40A {Helicobacter pylori 26695} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.80 E-value=0.005 Score=40.70 Aligned_cols=48 Identities=27% Similarity=0.535 Sum_probs=33.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHC--CCCHHHH
Q ss_conf 23553047740679999999999982995784788852310011102--7703431
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVY--DGIPNLL 509 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y--~~iPHLl 509 (806)
.+||+|.|||||+-++|+++ +.-|++.|.+.|-- -.||..+ +++.++.
T Consensus 173 nilI~G~tgSGKTTll~al~-----~~i~~~~rivtIEd-~~El~l~~~~~~~~~~ 222 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIM-----EFIPKEERIISIED-TEEIVFKHHKNYTQLF 222 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGG-----GGSCTTSCEEEEES-SCCCCCSSCSSEEEEE
T ss_pred CEEEEEECCCCHHHHHHHHH-----HHCCCCCCEEECCC-CHHHHHCCCCCEEEEE
T ss_conf 58999607999899999997-----32135564333144-0554313577510122
No 17
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis 1330}
Probab=95.62 E-value=0.0036 Score=41.77 Aligned_cols=40 Identities=35% Similarity=0.574 Sum_probs=31.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHH
Q ss_conf 2355304774067999999999998299578478885231001110
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSV 501 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~ 501 (806)
.+||+|.|||||+-.+|+++. .-|.+.|.+-|.- ..||..
T Consensus 177 nili~G~tgSGKTTll~al~~-----~ip~~~riv~iEd-~~El~l 216 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQ-----EIPFDQRLITIED-VPELFL 216 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHT-----TSCTTSCEEEEES-SSCCCC
T ss_pred CEEEECCCCCCHHHHHHHHHH-----HHHCCCCCEEEEC-CHHHHC
T ss_conf 599989999978999999986-----2110344026617-777644
No 18
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.59 E-value=0.14 Score=29.76 Aligned_cols=44 Identities=20% Similarity=0.431 Sum_probs=36.5
Q ss_pred EEEHHHHHHHHHHCCC--HHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 7763446888873210--0588999999866414237999965777
Q gi|254780799|r 593 VVVIDEMADLMMVARK--DIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 593 vviiDElaDlmm~~~~--~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
++|+|.+.+++....+ .......+|.+.++..+++.++..|.+.
T Consensus 138 ~vvid~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~ 183 (251)
T 2ehv_A 138 RLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD 183 (251)
T ss_dssp EEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-
T ss_pred EEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEEC
T ss_conf 3787517778740467678899999999999971995999997504
No 19
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.58 E-value=0.038 Score=34.09 Aligned_cols=143 Identities=15% Similarity=0.154 Sum_probs=75.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHH-------HHHCCCCH--HHHCCCCCCHHHHHHHHHHHH
Q ss_conf 355304774067999999999998299578478885231001-------11027703--431223343045668999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLE-------LSVYDGIP--NLLTPVVTNPQKAVTVLKWLV 527 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vE-------ls~Y~~iP--HLl~pVvTd~~kA~~aL~w~V 527 (806)
..|||.||.|||-....|..-+.-+. ..+.+++..-|=+ ++...++| ++.++-.++- -...+..+.
T Consensus 206 ~vi~a~pg~GKT~~~~~~a~~~~~~~---g~~Vl~~SlEm~~~~~~~R~~a~~~~v~~~~i~~~~~~~~--~~~~~~~~~ 280 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNVATKT---NENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPE--DWGKLTMAM 280 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHS---SCCEEEEESSSCHHHHHHHHHHHHHTCCHHHHHTSCCCHH--HHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHCCCCCCHH--HHHHHHHHH
T ss_conf 99995677653299998997576625---9807998078999999999999873356776346999878--999999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC
Q ss_conf 99999999998708996899999999887447866775446776545432223322323469868776344688887321
Q gi|254780799|r 528 CEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVAR 607 (806)
Q Consensus 528 ~EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~ 607 (806)
.++..+-=.+...+..+++.-..+++....+ ...-+||||=+-. |+..+
T Consensus 281 ~~~~~~~l~i~~~~~~~~~~i~~~~r~~~~~------------------------------~g~~~vviDyl~~-~~~~~ 329 (454)
T 2r6a_A 281 GSLSNAGIYIDDTPSIRVSDIRAKCRRLKQE------------------------------SGLGMIVIDYLQL-IQGSG 329 (454)
T ss_dssp HHHHSSCEEEECCTTCCHHHHHHHHHHHHTT------------------------------TCCCEEEEECGGG-SCCSC
T ss_pred HHHHHCCEEEECCCCCCHHHHHHHHHHHHHH------------------------------CCCCEEEEEEHHH-CCCCC
T ss_conf 9876366067336676468999999999985------------------------------4996899974442-04678
Q ss_pred -------CHHHHHHHHHHHHHHHCCEEEEEEECCC
Q ss_conf -------0058899999986641423799996577
Q gi|254780799|r 608 -------KDIESAVQRLAQMARASGIHVIMATQRP 635 (806)
Q Consensus 608 -------~~ve~~i~rlaq~ara~GiHli~aTqrP 635 (806)
.+|.....+|.++|+--++|.|+.+|-.
T Consensus 330 ~~~~~~~~~i~~i~~~Lk~lA~~~~v~vi~~sqln 364 (454)
T 2r6a_A 330 RSKENRQQEVSEISRSLKALARELEVPVIALSQLS 364 (454)
T ss_dssp C----CHHHHHHHHHHHHHHHHHHTCCEEEEECCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_conf 88866999999999999999999798599981568
No 20
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.39 E-value=0.0084 Score=38.99 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=34.4
Q ss_pred CCEEEEEHHHHHHHHHHCC------CHHHHHHHHHHHHHHHCCEEEEEEEC
Q ss_conf 9868776344688887321------00588999999866414237999965
Q gi|254780799|r 589 MPYIVVVIDEMADLMMVAR------KDIESAVQRLAQMARASGIHVIMATQ 633 (806)
Q Consensus 589 lp~ivviiDElaDlmm~~~------~~ve~~i~rlaq~ara~GiHli~aTq 633 (806)
..+-+||||=++.++.... .++...+.+|.+.|+-.|++.|+-.|
T Consensus 104 ~~~~liVIDsl~~~~~~~~~~~~~~~~~~~~~~~L~~~a~~~~~~vi~i~q 154 (220)
T 2cvh_A 104 SNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQ 154 (220)
T ss_dssp TTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCEEEEECHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 573299833244231220141367899999999999999872977999964
No 21
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.30 E-value=0.0098 Score=38.50 Aligned_cols=31 Identities=39% Similarity=0.549 Sum_probs=24.4
Q ss_pred ECCCCCE--EEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 4100202--355304774067999999999998
Q gi|254780799|r 450 DLARMPH--LLIAGTTGSGKSVAINTMILSLLY 480 (806)
Q Consensus 450 DLakMPH--LLIAGtTGSGKSV~iN~iI~SlLy 480 (806)
++.+=|| +||+|.||||||..+|+++..+.-
T Consensus 19 ~~~~~~~GlilisG~tGSGKTT~l~all~~i~~ 51 (261)
T 2eyu_A 19 ELCHRKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp HGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 998658988999899996399999999984264
No 22
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus dsm 4304} PDB: 2oaq_1
Probab=95.03 E-value=0.0066 Score=39.76 Aligned_cols=161 Identities=15% Similarity=0.278 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHHHHHHHCCC------CEEEEEEEE-C---CEEEEEE----EEECCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 3256654578999999742486------328998410-4---4244444----321478639999978899998863001
Q gi|254780799|r 327 FSPKVMQNNACTLKSVLSDFGI------QGEIVNVRP-G---PVITLYE----LEPAPGIKSSRIIGLSDDIARSMSAIS 392 (806)
Q Consensus 327 ~s~eeL~~nA~lLE~tL~dFGV------e~~Vv~v~p-G---PVVTrYE----i~PApGVKvSKI~nLadDIA~aLsa~s 392 (806)
++++..+.....|..-+-.||+ +-.|.+|+. | |+..++. +++..-..-..+.++..-|| ..+
T Consensus 113 ~~~~~~~~l~y~i~~~~~G~G~L~~ll~D~~V~DI~ing~~~~v~V~~r~~g~l~~~~~~~~e~l~~ii~rl~----~~~ 188 (511)
T 2oap_1 113 FTDNFYSRMLYYLFRDFFGYGLIDPLMEDTNVEDISCDGYNIPIFIYHQKYGNVETNIVLDQEKLDRMVLRLT----QRS 188 (511)
T ss_dssp -CTTTTHHHHHHHHHTTTSCGGGHHHHHCTTEEEEEECSTTCCCEEEETTTEEEEESCCCCHHHHHHHHHHHH----HHT
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEEEECCCCEEEEEECCCCEEEECCCCCHHHHHHHHHHHH----HHC
T ss_conf 8989999999999998638676665652798479999478876999983672899537899999999999999----873
Q ss_pred -CCCCCCCCCCEEEEEECCCCCCEEEEHHHCCC-------HHHHHCCCCCH-HHCCCCCCCCEEEEEC-----CCCCEEE
Q ss_conf -21000388612555302456623873423072-------13430221000-2104566666678541-----0020235
Q gi|254780799|r 393 -ARVAVIPRRNAIGIELPNDIRETVMLRDLIVS-------RVFEKNQCDLA-INLGKSIEGKPIIADL-----ARMPHLL 458 (806)
Q Consensus 393 -vRIapIPGK~~VGIEiPN~~r~~V~lreil~s-------~~f~~s~~~L~-iaLGKdI~G~pvv~DL-----akMPHLL 458 (806)
.+|.. +++.+--.+||..|-.+.+...... ..|... +++ .-|-+.=.=.+-.+++ ...--+|
T Consensus 189 g~~is~--~~P~~d~~l~dg~Ri~~~~~~~v~~~G~~~~IRk~~~~--~~tl~dLv~~G~~~~~~~~~l~~~v~~~~~il 264 (511)
T 2oap_1 189 GKHISI--ANPIVDATLPDGSRLQATFGTEVTPRGSSFTIRKFTIE--PLTPIDLIEKGTVPSGVLAYLWLAIEHKFSAI 264 (511)
T ss_dssp TCCCBT--TBCEEEEEETTTEEEEEECSSSSCTTCSEEEEEECCCC--CCCHHHHHHTTSSCHHHHHHHHHHHHTTCCEE
T ss_pred CCCCCC--CCCCEEEEECCCCEEEEEECCCCCCCCCEEEEECCCCC--CCCHHHHHHCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 987322--68756899679976999965764799766999612877--69989997658982999999999986695599
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHH
Q ss_conf 5304774067999999999998299578478885231001110
Q gi|254780799|r 459 IAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSV 501 (806)
Q Consensus 459 IAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~ 501 (806)
|+|.|||||+-.+|+++.. -|.+.|.+-|-- ..|+..
T Consensus 265 i~G~tgSGKTT~L~all~~-----i~~~~riitIEd-~~El~l 301 (511)
T 2oap_1 265 VVGETASGKTTTLNAIMMF-----IPPDAKVVSIED-TREIKL 301 (511)
T ss_dssp EEESTTSSHHHHHHHHGGG-----SCTTCCEEEEES-SCCCCC
T ss_pred EECCCCCCHHHHHHHHHHH-----HHHCCCEEEEEC-CCCCCC
T ss_conf 9899989889999999996-----454054145433-743214
No 23
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.95 E-value=0.011 Score=38.01 Aligned_cols=53 Identities=32% Similarity=0.504 Sum_probs=33.1
Q ss_pred EEECCCCCE--EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCC
Q ss_conf 854100202--3553047740679999999999982995784788852310011102770
Q gi|254780799|r 448 IADLARMPH--LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGI 505 (806)
Q Consensus 448 v~DLakMPH--LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~i 505 (806)
+-.+...|+ +||+|.||||||..+++++--+.- ++...-+-+-|| +|. .|.+.
T Consensus 115 l~~~~~~~~GliLvtGpTGSGKTTtl~all~~~~~--~~~~~iitiEdP--iE~-~~~~~ 169 (356)
T 3jvv_A 115 FKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNN--TKYHHILTIEDP--IEF-VHESK 169 (356)
T ss_dssp HHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHH--HCCCEEEEEESS--CCS-CCCCS
T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCC--CCCCEEEECCCC--CCC-HHCCC
T ss_conf 99998617977999899999857999999874325--666338862675--301-20154
No 24
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.77 E-value=0.028 Score=35.10 Aligned_cols=59 Identities=29% Similarity=0.576 Sum_probs=37.8
Q ss_pred HCCCCCCCCEEEEECCCCCE--EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEE-CCCHHHHHH
Q ss_conf 10456666667854100202--355304774067999999999998299578478885-231001110
Q gi|254780799|r 437 NLGKSIEGKPIIADLARMPH--LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMI-DPKMLELSV 501 (806)
Q Consensus 437 aLGKdI~G~pvv~DLakMPH--LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evklili-DPK~vEls~ 501 (806)
.||-+-.-...+-.+...|| +||+|.||||||--+++|+-.+ .+|+ .+.+.| || +|.-.
T Consensus 148 ~Lg~~~~~~~~l~~~~~~~~GlilisGpTGSGKSTTl~a~l~~i---~~~~-r~IiTiEDP--vE~~~ 209 (418)
T 1p9r_A 148 SLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQEL---NSSE-RNILTVEDP--IEFDI 209 (418)
T ss_dssp GSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHH---CCTT-SCEEEEESS--CCSCC
T ss_pred HCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH---CCCC-CEEEEEECC--CCCCC
T ss_conf 55996789999999985689779996799886417899998775---0698-359997067--32445
No 25
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, cell cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.48 E-value=0.014 Score=37.32 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=29.2
Q ss_pred CCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEE
Q ss_conf 698687763446888873210058899999986641423799
Q gi|254780799|r 588 HMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVI 629 (806)
Q Consensus 588 ~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli 629 (806)
..|.|+|+ -=||++ ...|++....++-++....||...
T Consensus 155 ~~~vi~Vi--nK~D~l--t~~El~~~k~~i~~~l~~~~I~~~ 192 (301)
T 2qnr_A 155 KVNIVPVI--AKADTL--TLKERERLKKRILDEIEEHNIKIY 192 (301)
T ss_dssp TSCEEEEE--CCGGGS--CHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCEEEEE--ECCCCC--CHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 99779999--691278--999999999999999998698443
No 26
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein transport; HET: ADP; 2.80A {Aquifex aeolicus VF5} PDB: 2eww_A* 2gsz_A*
Probab=94.37 E-value=0.033 Score=34.58 Aligned_cols=32 Identities=38% Similarity=0.569 Sum_probs=24.2
Q ss_pred EEECCCCCE--EEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 854100202--35530477406799999999999
Q gi|254780799|r 448 IADLARMPH--LLIAGTTGSGKSVAINTMILSLL 479 (806)
Q Consensus 448 v~DLakMPH--LLIAGtTGSGKSV~iN~iI~SlL 479 (806)
+.++.+.|+ +||+|.||||||.-+++++--+.
T Consensus 128 l~~~~~~~~Glilv~GpTGSGKTTtl~a~l~~~~ 161 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9999864697599987999748999999999841
No 27
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.18 E-value=0.026 Score=35.32 Aligned_cols=24 Identities=38% Similarity=0.684 Sum_probs=22.2
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 002023553047740679999999
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI 475 (806)
..+||..|.|.||+|||--||+|.
T Consensus 21 ~~~p~I~ivG~~nvGKSSLiN~L~ 44 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 899899999999984999999996
No 28
>2w0m_A SSO2452; RECA, SSPF, unknown function; 2.0A {Sulfolobus solfataricus P2}
Probab=93.78 E-value=0.083 Score=31.54 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=40.8
Q ss_pred CEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCC
Q ss_conf 868776344688887321005889999998664142379999657775
Q gi|254780799|r 590 PYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSV 637 (806)
Q Consensus 590 p~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsv 637 (806)
.+-+++||-+..+.+.........+.++.+.|+..|+..++.+|.+.-
T Consensus 123 ~~~~~viDsl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 170 (235)
T 2w0m_A 123 GKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAIT 170 (235)
T ss_dssp SCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC----
T ss_pred CCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 441001422777753307899999999999999819859999721688
No 29
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.69 E-value=0.028 Score=35.03 Aligned_cols=70 Identities=20% Similarity=0.336 Sum_probs=40.9
Q ss_pred CCCCCCEEEE--HHHCCCHHHHHCCCCCHHHCCCCCCCCEEEE-------ECCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 2456623873--4230721343022100021045666666785-------410020235530477406799999999999
Q gi|254780799|r 409 PNDIRETVML--RDLIVSRVFEKNQCDLAINLGKSIEGKPIIA-------DLARMPHLLIAGTTGSGKSVAINTMILSLL 479 (806)
Q Consensus 409 PN~~r~~V~l--reil~s~~f~~s~~~L~iaLGKdI~G~pvv~-------DLakMPHLLIAGtTGSGKSV~iN~iI~SlL 479 (806)
||++|++-.. .+.+..+.|.+.-.|-.+ .||.|+.-+. +-.+.||+|+-|..|+||+.++.++.-.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~pw~eKyrP~~~---~divg~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKTt~a~~la~~~~ 83 (353)
T 1sxj_D 7 PNKKRKISKLAAEQSLAQQPWVEKYRPKNL---DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp -------------------CHHHHTCCSST---TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCCCHHHHHCCCCH---HHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 875331345555312136941686589989---99139699999999999769987599889599989999999998447
Q ss_pred HH
Q ss_conf 82
Q gi|254780799|r 480 YR 481 (806)
Q Consensus 480 yk 481 (806)
..
T Consensus 84 ~~ 85 (353)
T 1sxj_D 84 GP 85 (353)
T ss_dssp HH
T ss_pred CC
T ss_conf 87
No 30
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.20 E-value=0.13 Score=30.05 Aligned_cols=45 Identities=24% Similarity=0.561 Sum_probs=30.9
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHC-CHHHEEEEEECCCH
Q ss_conf 0020235530477406799999999999829-95784788852310
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILSLLYRM-TPAQCRLIMIDPKM 496 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~SlLyk~-~P~evkliliDPK~ 496 (806)
.+=..++|.|.||||||-.|=-+|+--.|.. ....+|.+..-|.+
T Consensus 74 ~~n~vvvV~G~TGsGKSTqiPq~Lle~~~~~~~~~~~~I~~tqPRR 119 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRR 119 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSH
T ss_pred HHCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCH
T ss_conf 9799799993898999999999999867642788886599963737
No 31
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.14 E-value=0.06 Score=32.60 Aligned_cols=35 Identities=31% Similarity=0.583 Sum_probs=28.9
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 00202355304774067999999999998299578
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQ 486 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~e 486 (806)
.+.||||+.|.+|+||+-+++++.-++.....+..
T Consensus 40 ~~~p~lLl~GP~G~GKTtla~~la~~l~~~~~~~~ 74 (323)
T 1sxj_B 40 GNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADG 74 (323)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 99997988895999899999999998669977776
No 32
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.00 E-value=0.26 Score=27.82 Aligned_cols=75 Identities=20% Similarity=0.172 Sum_probs=41.7
Q ss_pred CCEEEEEHHHHHHHHHHCCCHHHHHHHHHHH---HHHHCCEEEEEEECCCC-CCCCCHHHHH-CCCCEEEEEECCCCCCH
Q ss_conf 9868776344688887321005889999998---66414237999965777-5355435541-10251587645866421
Q gi|254780799|r 589 MPYIVVVIDEMADLMMVARKDIESAVQRLAQ---MARASGIHVIMATQRPS-VDVITGTIKA-NFPTRISFQVSSKIDSR 663 (806)
Q Consensus 589 lp~ivviiDElaDlmm~~~~~ve~~i~rlaq---~ara~GiHli~aTqrPs-vdvitg~ika-n~p~riaf~v~s~~dSr 663 (806)
-+++++++||+-+|- ... .....++.+ .-....+.+|.+|+.+. .+.+-.-++. ..|.++-|.--+.-+-+
T Consensus 124 ~~~~~~~lde~~~l~---~~~-~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~~~l~ 199 (389)
T 1fnn_A 124 DLYMFLVLDDAFNLA---PDI-LSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIF 199 (389)
T ss_dssp TCCEEEEEETGGGSC---HHH-HHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHH
T ss_pred CCCCCCCCHHHHHHH---HHH-HHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 665433105887766---888-8889999987652157717999926764222202522330257740027999999999
Q ss_pred HHCC
Q ss_conf 2338
Q gi|254780799|r 664 TILG 667 (806)
Q Consensus 664 tild 667 (806)
-||.
T Consensus 200 ~Il~ 203 (389)
T 1fnn_A 200 DILL 203 (389)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 33
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, alternative splicing, coiled coil, cytoplasm, nucleus, protein transport; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=92.76 E-value=0.26 Score=27.86 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=66.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHH
Q ss_conf 34898899999999971289742110012455666778888877770389999999965985000142220011778999
Q gi|254780799|r 695 PFVSDIEVEKVVSHLKTQGEAKYIDIKDKILLNEEMRFSENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAAS 774 (806)
Q Consensus 695 ~~v~~~ev~~v~~~~~~q~~~~y~~~~~~~~~~~~~~~~~~~~~~d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar 774 (806)
.-||.+++.+-++-++.=|.|--+-.+....--.. ...+.+.--....+++-..+-+|.|.|+++|..-+.||-.
T Consensus 113 ~~IS~dDi~~Ai~~l~~Lg~g~~l~~i~~~~~V~S-----vp~el~~D~~~il~~~~~~g~vT~~~L~~~lgWs~~ra~~ 187 (234)
T 3cuq_A 113 QDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQS-----VPAELNMDHTVVLQLAEKNGYVTVSEIKASLKWETERARQ 187 (234)
T ss_dssp SSCCHHHHHHHHHHHGGGBTTCEEEEETTEEEEEC-----SCCCCCHHHHHHHHHHTTTSEECHHHHHHHHTCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEECCEEEEEE-----CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 75699999999999997499869999999899996-----8864221899999999846991699999997969999999
Q ss_pred HHHHHHHCCCCCHHHCC-CCCEE
Q ss_conf 99999977986802278-87267
Q gi|254780799|r 775 IIENMEEKGVIGPASST-GKREI 796 (806)
Q Consensus 775 ~~~~~e~~giv~~~~g~-~~r~v 796 (806)
-+|.|+.+|++=--+.. +.|.-
T Consensus 188 ~Le~lv~~GllwiD~q~~ge~~Y 210 (234)
T 3cuq_A 188 VLEHLLKEGLAWLDLQAPGEAHY 210 (234)
T ss_dssp HHHHHHHHTSCEEESSSSSSCEE
T ss_pred HHHHHHHCCCEEEECCCCCCEEE
T ss_conf 99999968998997899984456
No 34
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.71 E-value=0.22 Score=28.39 Aligned_cols=144 Identities=15% Similarity=0.211 Sum_probs=73.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHH----CCHHHEEEEEECCCHHHHHHCCCCHHHHCCC--CCCHHHHHHHHHHHH
Q ss_conf 2023553047740679999999999982----9957847888523100111027703431223--343045668999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILSLLYR----MTPAQCRLIMIDPKMLELSVYDGIPNLLTPV--VTNPQKAVTVLKWLV 527 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~SlLyk----~~P~evkliliDPK~vEls~Y~~iPHLl~pV--vTd~~kA~~aL~w~V 527 (806)
-+++|+-|.+|+||+.....+.-.|-=. ....+++.+-++.+.+.-+.+.-+-+|.... ...|+.
T Consensus 45 ~~~~li~GppG~GKTtlar~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------- 115 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKH--------- 115 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSS---------
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECHHHCCCCHHHHHHHHHHHHCCCCCCCC---------
T ss_conf 86089987998829999999999987650454568884189950044067489999999987433436511---------
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC
Q ss_conf 99999999998708996899999999887447866775446776545432223322323469868776344688887321
Q gi|254780799|r 528 CEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVAR 607 (806)
Q Consensus 528 ~EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~ 607 (806)
|. ++..+-.++... ..-.+.++++||+-.|+-...
T Consensus 116 -------------~~-~~~~~~~~~~~~-------------------------------~~~~~~~ivlDe~d~l~~~~~ 150 (384)
T 2qby_B 116 -------------GI-NLGEYIDKIKNG-------------------------------TRNIRAIIYLDEVDTLVKRRG 150 (384)
T ss_dssp -------------SS-CTHHHHHHHHHH-------------------------------HSSSCEEEEEETTHHHHHSTT
T ss_pred -------------CC-CHHHHHHHHHHH-------------------------------HHCCCEEEEECHHHHHHHCCH
T ss_conf -------------34-499999998743-------------------------------412670685010556652001
Q ss_pred CHHHHHHHHHHHHHHHCCEEEEEEECCCCC-CCCCHHHHHCCCCEEEEE
Q ss_conf 005889999998664142379999657775-355435541102515876
Q gi|254780799|r 608 KDIESAVQRLAQMARASGIHVIMATQRPSV-DVITGTIKANFPTRISFQ 655 (806)
Q Consensus 608 ~~ve~~i~rlaq~ara~GiHli~aTqrPsv-dvitg~ikan~p~riaf~ 655 (806)
. +....++.+. ....++|++|.+... +-+-.-++..++-++-|.
T Consensus 151 ~--~~~~~~l~~~--~~~~~~I~~~~~~~~~~~~~~~~~sr~~~~~~~~ 195 (384)
T 2qby_B 151 G--DIVLYQLLRS--DANISVIMISNDINVRDYMEPRVLSSLGPSVIFK 195 (384)
T ss_dssp S--HHHHHHHHTS--SSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEEC
T ss_pred H--HHHHHHHHCC--CCCCEEEEECCCHHHHHHHCCCHHHHCCCCCCCC
T ss_conf 4--4566543105--6664289851540367763300343225200158
No 35
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.32 E-value=0.073 Score=31.97 Aligned_cols=20 Identities=40% Similarity=0.777 Sum_probs=18.3
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 23553047740679999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI 475 (806)
.+++.|-||+|||-.+|+|.
T Consensus 41 ~I~lvG~tg~GKSSliN~ll 60 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSII 60 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89998989963999999983
No 36
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.11 E-value=0.0033 Score=42.06 Aligned_cols=45 Identities=11% Similarity=0.309 Sum_probs=34.7
Q ss_pred EEEEEHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCEEEEEEECCC
Q ss_conf 6877634468888732---10058899999986641423799996577
Q gi|254780799|r 591 YIVVVIDEMADLMMVA---RKDIESAVQRLAQMARASGIHVIMATQRP 635 (806)
Q Consensus 591 ~ivviiDElaDlmm~~---~~~ve~~i~rlaq~ara~GiHli~aTqrP 635 (806)
.=+||||-|..+.--. ..++...+.+|.++|+..|+|+|+..|-.
T Consensus 134 ~~lvviD~l~~~~~~~en~~~~~~~~~~~l~~~a~~~g~~vi~v~H~~ 181 (279)
T 1nlf_A 134 RRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp CSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred CEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 539981605552478877437889999999999987599799983678
No 37
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens}
Probab=92.07 E-value=0.071 Score=32.06 Aligned_cols=22 Identities=36% Similarity=0.670 Sum_probs=19.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHH
Q ss_conf 2023553047740679999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI 475 (806)
---+++.|.||||||-.+|+++
T Consensus 21 ~~rI~liG~tg~GKStl~N~l~ 42 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSIL 42 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 8789999999982999999996
No 38
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=91.82 E-value=0.084 Score=31.51 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=19.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHH
Q ss_conf 2355304774067999999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~S 477 (806)
.+++.|-||+|||..+|+|+=.
T Consensus 38 ~I~l~G~tg~GKSSliN~L~g~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999899999599999998478
No 39
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=91.27 E-value=0.11 Score=30.75 Aligned_cols=33 Identities=6% Similarity=0.003 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 6899999999999999998708996899999999
Q gi|254780799|r 520 VTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVA 553 (806)
Q Consensus 520 ~~aL~w~V~EMe~RY~l~a~~~vRni~~yN~k~~ 553 (806)
...|.++...-.++|++ +..-..|+..|.++..
T Consensus 339 i~~l~~if~~i~~~~~i-s~gDfP~~~~~~e~l~ 371 (550)
T 2qpt_A 339 ILKLPVIFAKIQLEHHI-SPGDFPDCQKMQELLM 371 (550)
T ss_dssp HHTHHHHHHHHHHTTCC-CTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHC
T ss_conf 98738999999998388-9654788999999970
No 40
>1w5s_A ORC2; CDC6, DNA replication initiation, DNA binding protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.16 E-value=0.64 Score=24.90 Aligned_cols=78 Identities=14% Similarity=0.264 Sum_probs=47.1
Q ss_pred CEEEEEHHHHHHHHHHCC--CHHHHHHHHHHHH----HHHCCEEEEEEECCCC-CCCCCHHHH---HCCCCEEEEEECCC
Q ss_conf 868776344688887321--0058899999986----6414237999965777-535543554---11025158764586
Q gi|254780799|r 590 PYIVVVIDEMADLMMVAR--KDIESAVQRLAQM----ARASGIHVIMATQRPS-VDVITGTIK---ANFPTRISFQVSSK 659 (806)
Q Consensus 590 p~ivviiDElaDlmm~~~--~~ve~~i~rlaq~----ara~GiHli~aTqrPs-vdvitg~ik---an~p~riaf~v~s~ 659 (806)
.+.|+|+||+--|..... .++=..+.|+-+. -....+.+|.+|+.+. .+.....++ ..+|.+|-|.-=+.
T Consensus 138 ~~~viilDEiD~L~~~~~~~~~~l~~L~~~~e~l~~~~~~~~~~~I~i~n~~~~~~~l~~~~~~~~sr~~~~i~F~pY~~ 217 (412)
T 1w5s_A 138 HYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKS 217 (412)
T ss_dssp CEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCH
T ss_pred CCCEEEEEEHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCHHCCCCEEEECCCCCH
T ss_conf 87548997300230244420568889999987410212566226887247657888888636420012663675699999
Q ss_pred CCCHHHCC
Q ss_conf 64212338
Q gi|254780799|r 660 IDSRTILG 667 (806)
Q Consensus 660 ~dSrtild 667 (806)
-+=+.||.
T Consensus 218 ~el~~IL~ 225 (412)
T 1w5s_A 218 RELYTILE 225 (412)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 41
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone; HET: MSE; 1.70A {Methylobacterium extorquens AM1} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.98 E-value=0.14 Score=29.89 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=31.3
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 02355304774067999999999998299578478885231
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
..+=|.|.+|+|||-.||.++.-+ +..-..|-.+-+||-
T Consensus 56 ~~IgItG~PGaGKSTLi~~L~~~~--~~~g~kvavlavDps 94 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL--TAAGHKVAVLAVDPS 94 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH--HHTTCCEEEEEECGG
T ss_pred EEEECCCCCCCCHHHHHHHHHHHH--HCCCCCEEEEECCCC
T ss_conf 599523899988999999999997--438983112314876
No 42
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.83 E-value=0.064 Score=32.38 Aligned_cols=51 Identities=24% Similarity=0.331 Sum_probs=34.2
Q ss_pred CCCCEEEEE-HH-HHHH--------HHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCC
Q ss_conf 469868776-34-4688--------887321005889999998664142379999657775
Q gi|254780799|r 587 QHMPYIVVV-ID-EMAD--------LMMVARKDIESAVQRLAQMARASGIHVIMATQRPSV 637 (806)
Q Consensus 587 ~~lp~ivvi-iD-ElaD--------lmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsv 637 (806)
..+|.+|++ || -+|| .=++.....-..++.++|+-.+.|-+.|+.|=||+.
T Consensus 156 ~~~~~~~~~~~d~t~~~~~~r~~~d~~~~~~D~p~~~vi~~~~~~~~~G~~Ii~~sgR~~~ 216 (301)
T 1ltq_A 156 PGKPKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESG 216 (301)
T ss_dssp TTSCEEEEEETBTTTBCCSSCCTTCGGGGGGCCBCHHHHHHHHHHHHTTCEEEEEECSCCC
T ss_pred CCCCCCEEEECCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHH
T ss_conf 5787606995367202356765446333467877678999999998579869999377404
No 43
>3b6e_A Interferon-induced helicase C domain-containing protein 1; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, structural genomics; 1.60A {Homo sapiens}
Probab=90.77 E-value=0.17 Score=29.25 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=30.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHC---CHHHEEEEEECCCHH
Q ss_conf 0235530477406799999999999829---957847888523100
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRM---TPAQCRLIMIDPKML 497 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~---~P~evkliliDPK~v 497 (806)
-+++|+..|||||+.+.-..+..+|.+. .+....+++++++.+
T Consensus 49 ~n~iv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lvv~p~~~L 94 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLL 94 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHH
T ss_conf 9989991899848999999999998732123678608998081999
No 44
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein-protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.70 E-value=0.46 Score=25.98 Aligned_cols=73 Identities=21% Similarity=0.241 Sum_probs=52.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH----HHHHCC---CCHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 235530477406799999999999829957847888523100----111027---7034312233430456689999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML----ELSVYD---GIPNLLTPVVTNPQKAVTVLKWLVC 528 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v----Els~Y~---~iPHLl~pVvTd~~kA~~aL~w~V~ 528 (806)
+++++|-||+||.-.+==+ . -.|+..-..+-++-.|--|. -|..|- |+|.. +..++++.+.+++|++.
T Consensus 104 vi~lvG~~G~GKTTt~aKl-A-~~~~~~~~kv~li~~Dt~R~ga~eQL~~~a~~~~v~~~---~~~~~~d~~~~~~~~~~ 178 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKL-G-RYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVI---QGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp EEEEECSTTSSHHHHHHHH-H-HHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEE---CCCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHH-H-HHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEE---ECCCCCHHHHHHHHHHH
T ss_conf 9995246677741189999-9-99865115400342142000067899985655685079---66887207877899999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780799|r 529 EMEER 533 (806)
Q Consensus 529 EMe~R 533 (806)
+...+
T Consensus 179 ~~~~~ 183 (304)
T 1rj9_A 179 AMKAR 183 (304)
T ss_dssp HHHHH
T ss_pred HHHHC
T ss_conf 99986
No 45
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=90.41 E-value=0.15 Score=29.66 Aligned_cols=21 Identities=38% Similarity=0.711 Sum_probs=18.7
Q ss_pred EEEEEECCCCHHHHHHHHHHH
Q ss_conf 235530477406799999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~ 476 (806)
.+++-|.||+|||-.+|+|+=
T Consensus 24 ~I~l~G~tg~GKSsl~N~l~g 44 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899991899839999999979
No 46
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.07 E-value=0.13 Score=30.05 Aligned_cols=21 Identities=48% Similarity=0.642 Sum_probs=18.7
Q ss_pred CEEEEEECCCCHHHHHHHHHH
Q ss_conf 023553047740679999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI 475 (806)
.|+.|+|.||+|||-.||++.
T Consensus 70 l~iai~G~~n~GKSsliN~l~ 90 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLR 90 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 269998899987999999984
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=89.89 E-value=0.25 Score=27.95 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=12.7
Q ss_pred CCCCCHHHHHCCCCEEEEEE
Q ss_conf 53554355411025158764
Q gi|254780799|r 637 VDVITGTIKANFPTRISFQV 656 (806)
Q Consensus 637 vdvitg~ikan~p~riaf~v 656 (806)
.|.|-..|=|-|+-++|...
T Consensus 645 ~~~I~~al~aG~~~nvA~~~ 664 (773)
T 2xau_A 645 FDNIRKALASGFFMQVAKKR 664 (773)
T ss_dssp HHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHCHHHEEEEC
T ss_conf 99999999996758617814
No 48
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=89.60 E-value=0.2 Score=28.73 Aligned_cols=170 Identities=15% Similarity=0.105 Sum_probs=77.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHH-------HHHCCHHHEEEEEECCCH--HHHHHCCCCHHHHCCCCCCHHHHHHHHH
Q ss_conf 2023553047740679999999999-------982995784788852310--0111027703431223343045668999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILSL-------LYRMTPAQCRLIMIDPKM--LELSVYDGIPNLLTPVVTNPQKAVTVLK 524 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~Sl-------Lyk~~P~evkliliDPK~--vEls~Y~~iPHLl~pVvTd~~kA~~aL~ 524 (806)
-|-+.|.|.++||||-.||+++=.= -..+.|-++++.=-+... .....+..++|...-..++.........
T Consensus 24 ~P~I~VvG~~ssGKSsliNaLlG~~ilP~~~~~~T~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII 103 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEECCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 88599991888969999999968896887996361577899985168766664306676775156652145578899999
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHH------
Q ss_conf 99999999999998708996899999999887447866775446776545432223322323469868776344------
Q gi|254780799|r 525 WLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDE------ 598 (806)
Q Consensus 525 w~V~EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDE------ 598 (806)
+.+.++ .+-|.. .. .+.+ ..+ .+...++- +++||=
T Consensus 104 ~~~~~~---------------~~~~~~-----~~----~~~i-----------~i~---~~~p~l~~-l~lvDtPG~~~~ 144 (315)
T 1jwy_B 104 RDTDRM---------------TGKNKG-----IS----AQPI-----------NLK---IYSPHVVN-LTLVDLPGITKV 144 (315)
T ss_dssp HHCC----------------------------CC----CCCE-----------EEE---EEETTSCS-EEEEECCCCC--
T ss_pred HHHHHH---------------CCCCCC-----CC----CCEE-----------EEE---ECCCCCCC-EEEEECCCCCCC
T ss_conf 999985---------------066766-----55----6506-----------999---43899875-379826875555
Q ss_pred -HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCC--CEEEEEECCCCCCH
Q ss_conf -688887321005889999998664142379999657775355435541102--51587645866421
Q gi|254780799|r 599 -MADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFP--TRISFQVSSKIDSR 663 (806)
Q Consensus 599 -laDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p--~riaf~v~s~~dSr 663 (806)
-.|-.++....++..+.-..+..++..+=.+-+++.....-.-.++|.--| .|+-| |-+++|..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~-v~~k~D~~ 211 (315)
T 1jwy_B 145 PVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIG-VITKLDLM 211 (315)
T ss_dssp -------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEE-EEECTTSS
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEE-EEECCCCC
T ss_conf 45787346999999999998627764336641244331002999999974834680246-86025323
No 49
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A*
Probab=89.58 E-value=0.29 Score=27.52 Aligned_cols=37 Identities=30% Similarity=0.520 Sum_probs=31.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 355304774067999999999998299578478885231
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
+=|.|..|+|||-.||+++.-+. .....|=.+-+||-
T Consensus 82 IgItG~PGaGKSTLi~~L~~~~~--~~g~~VavlavDPs 118 (355)
T 3p32_A 82 VGITGVPGVGKSTAIEALGMHLI--ERGHRVAVLAVDPS 118 (355)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEEEC--
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--HCCCCEEEEECCCC
T ss_conf 97428999989999999999998--64886568846888
No 50
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.56 E-value=0.25 Score=27.98 Aligned_cols=31 Identities=29% Similarity=0.580 Sum_probs=25.6
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 0020235530477406799999999999829
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILSLLYRM 482 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~SlLyk~ 482 (806)
.+.||||.-|-.|+||+..+.++.-.+....
T Consensus 44 ~~~~~lLl~GppG~GKTtla~~la~~~~~~~ 74 (340)
T 1sxj_C 44 GKLPHLLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp TCCCCEEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9998698889599999999999999862466
No 51
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.51 E-value=0.14 Score=29.80 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=27.5
Q ss_pred CCCCE-EEEEECCCCHHHHHHHHHHHHHHHHCCH
Q ss_conf 00202-3553047740679999999999982995
Q gi|254780799|r 452 ARMPH-LLIAGTTGSGKSVAINTMILSLLYRMTP 484 (806)
Q Consensus 452 akMPH-LLIAGtTGSGKSV~iN~iI~SlLyk~~P 484 (806)
.+.|| +|+-|..|+||+-+...+.-+|+....+
T Consensus 35 ~~~~h~~L~~Gp~G~GKt~~a~~la~~l~~~~~~ 68 (373)
T 1jr3_A 35 GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI 68 (373)
T ss_dssp TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 9977147657999988999999999986787788
No 52
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21
Probab=89.50 E-value=1.1 Score=23.24 Aligned_cols=33 Identities=30% Similarity=0.491 Sum_probs=25.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 2355304774067999999999998299578478885231
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
-+|++|-+|||||...+.+.-.+ ...++.||.-
T Consensus 35 ~ill~GppGsGKT~la~~la~~~-------~~~~~~i~~d 67 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEET-------QGNVIVIDND 67 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT-------TTCCEEECTH
T ss_pred EEEEECCCCCCHHHHHHHHHHHC-------CCCEEEEECH
T ss_conf 99988989765899999999980-------9990998548
No 53
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A*
Probab=89.26 E-value=0.1 Score=30.91 Aligned_cols=21 Identities=24% Similarity=0.645 Sum_probs=19.9
Q ss_pred CEEEEEECCCCHHHHHHHHHH
Q ss_conf 023553047740679999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI 475 (806)
|-+.|.|.++||||-.||+|+
T Consensus 27 p~I~VvG~~ssGKSTlINaLl 47 (341)
T 2x2e_A 27 PQIAVVGGQSAGKSSVLENFV 47 (341)
T ss_dssp CEEEEECBTTSSHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 869998489997999999995
No 54
>2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2, protein structure initiative; 1.80A {Escherichia coli K12} SCOP: c.37.1.10
Probab=89.09 E-value=0.38 Score=26.58 Aligned_cols=40 Identities=28% Similarity=0.445 Sum_probs=32.4
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 202355304774067999999999998299578478885231
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
-+.+=|.|..|+|||-.||+++.-++- ....|-.+-+||-
T Consensus 56 ~~~IgItG~PGaGKSTLi~~L~~~~~~--~~~~vavlavDps 95 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIR--EGLKVAVIAVDPS 95 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEECCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEECCCCC
T ss_conf 528973289999899999999999861--6886014416886
No 55
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=89.01 E-value=0.41 Score=26.34 Aligned_cols=34 Identities=26% Similarity=0.461 Sum_probs=27.9
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 0202355304774067999999999998299578
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQ 486 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~e 486 (806)
+.||+|+-|..|+||+-....+.-++.+......
T Consensus 37 ~~~~~Ll~Gp~G~GKTtla~~iak~l~~~~~~~~ 70 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIALARDLFGENWRDN 70 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 9985988899999889999999999843555677
No 56
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombination, hydrolase; 2.90A {Pyrococcus furiosus dsm 3638} SCOP: c.37.1.19 c.37.1.19
Probab=88.99 E-value=0.62 Score=25.00 Aligned_cols=12 Identities=8% Similarity=0.169 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999971
Q gi|254780799|r 700 IEVEKVVSHLKT 711 (806)
Q Consensus 700 ~ev~~v~~~~~~ 711 (806)
.|-..+++-.++
T Consensus 406 ~~r~~~l~~F~~ 417 (494)
T 1wp9_A 406 REQKLILDEFAR 417 (494)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999977
No 57
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, plasmid, helicase, hydrolase, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2w74_B*
Probab=88.99 E-value=0.36 Score=26.77 Aligned_cols=72 Identities=11% Similarity=0.119 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEEHHHCCCHHHHHCCCCCHHHCCCCC--C-C-C--EEE
Q ss_conf 99997889999886300121000388612555302456623873423072134302210002104566--6-6-6--678
Q gi|254780799|r 375 SRIIGLSDDIARSMSAISARVAVIPRRNAIGIELPNDIRETVMLRDLIVSRVFEKNQCDLAINLGKSI--E-G-K--PII 448 (806)
Q Consensus 375 SKI~nLadDIA~aLsa~svRIapIPGK~~VGIEiPN~~r~~V~lreil~s~~f~~s~~~L~iaLGKdI--~-G-~--pvv 448 (806)
....+--+|+.....-..+||+..=.+=.-|+-+|.-+ +++|---+.+-. |-=|+|+-. . | + -.|
T Consensus 632 ~~~~~~~~~l~~~fk~~~~~IlivvdmL~TGfDvP~l~--~lyldk~~~~~~-------liQaigR~nR~~~~~K~~g~I 702 (1038)
T 2w00_A 632 NGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLN--TLFVDKNLRYHG-------LMQAFSRTNRIYDATKTFGNI 702 (1038)
T ss_dssp HHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEE--EEEEESCCCHHH-------HHHHHHTTCCCCCTTCCSEEE
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCCCCE--EEEEECCCCCCC-------HHHHHHHHCCCCCCCCCCEEE
T ss_conf 43678899999861268962999803643578850240--799817888450-------999866743877799887799
Q ss_pred EECCCCC
Q ss_conf 5410020
Q gi|254780799|r 449 ADLARMP 455 (806)
Q Consensus 449 ~DLakMP 455 (806)
.|-..+.
T Consensus 703 vD~~~~~ 709 (1038)
T 2w00_A 703 VTFRDLE 709 (1038)
T ss_dssp EESSCCH
T ss_pred EEECCHH
T ss_conf 9956609
No 58
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferase; nucleoside modification, isopentenyl-tRNA transferase, MIAA, transferase/RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.89 E-value=0.13 Score=30.01 Aligned_cols=65 Identities=23% Similarity=0.442 Sum_probs=35.4
Q ss_pred ECCCCC-EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHC---------------CCCHHHHCCCC
Q ss_conf 410020-23553047740679999999999982995784788852310011102---------------77034312233
Q gi|254780799|r 450 DLARMP-HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVY---------------DGIPNLLTPVV 513 (806)
Q Consensus 450 DLakMP-HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y---------------~~iPHLl~pVv 513 (806)
..+.+| =+.|+|.||||||----.+ . +.- ..-.|=.|-- .+| ++|||-|.=++
T Consensus 5 ~~~~~p~vi~I~GpTasGKs~La~~l--A---~~~--~~eIIs~DS~----QvYk~l~IgTaKp~~~e~~~i~Hhlid~~ 73 (316)
T 3foz_A 5 SKASLPKAIFLMGPTASGKTALAIEL--R---KIL--PVELISVDSA----LIYKGMDIGTAKPNAEELLAAPHRLLDIR 73 (316)
T ss_dssp --CCCCEEEEEECCTTSCHHHHHHHH--H---HHS--CEEEEECCTT----TTBTTCCTTTTCCCHHHHHHSCEETSSCB
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHH--H---HHC--CCEEEECCHH----HHHCCCCEEECCCCHHHHHCCCEEEECCC
T ss_conf 66789956999898832799999999--9---986--9979940268----76199987778999999927997774566
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 4304566899999
Q gi|254780799|r 514 TNPQKAVTVLKWL 526 (806)
Q Consensus 514 Td~~kA~~aL~w~ 526 (806)
||.+--++=.|+
T Consensus 74 -~p~e~~sv~~f~ 85 (316)
T 3foz_A 74 -DPSQAYSAADFR 85 (316)
T ss_dssp -CTTSCCCHHHHH
T ss_pred -CCCCCEEHHHHH
T ss_conf -888755299999
No 59
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 3k0c_A* 3k0f_A*
Probab=88.82 E-value=0.7 Score=24.59 Aligned_cols=239 Identities=13% Similarity=0.164 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC---CE------------EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 2566545789999997424863289984104---42------------44444321478639999978899998863001
Q gi|254780799|r 328 SPKVMQNNACTLKSVLSDFGIQGEIVNVRPG---PV------------ITLYELEPAPGIKSSRIIGLSDDIARSMSAIS 392 (806)
Q Consensus 328 s~eeL~~nA~lLE~tL~dFGVe~~Vv~v~pG---PV------------VTrYEi~PApGVKvSKI~nLadDIA~aLsa~s 392 (806)
++..+++--..|...|++.|+-.-++.-..+ |. |...+.++. | ++.-|.|...-
T Consensus 156 ~~~~~r~~i~~l~~~lk~~~~t~ll~~~~~~~~~~~~~~~~~~~~~DgvI~L~~~~~-~----------~~~~R~l~I~K 224 (525)
T 1tf7_A 156 ASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLE-G----------ERRRRTLEILK 224 (525)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEECS-T----------TCCEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCEEEEECCEEEEEEECC-C----------CEEEEEEEEEE
T ss_conf 068999999999999985198699998861346655666525887222699875315-8----------70367899996
Q ss_pred CC-CCCCCCCCEEEEEECCCCCCEEEEHHHCCCHHHHH-CCCCCHHHC---CCCCCCCEEEEECCCCCEEEEEECCCCHH
Q ss_conf 21-00038861255530245662387342307213430-221000210---45666666785410020235530477406
Q gi|254780799|r 393 AR-VAVIPRRNAIGIELPNDIRETVMLRDLIVSRVFEK-NQCDLAINL---GKSIEGKPIIADLARMPHLLIAGTTGSGK 467 (806)
Q Consensus 393 vR-IapIPGK~~VGIEiPN~~r~~V~lreil~s~~f~~-s~~~L~iaL---GKdI~G~pvv~DLakMPHLLIAGtTGSGK 467 (806)
.| ..+.+| ....+|=+.--... .++..+..+. +...++.++ =+=+.|-..-.. =.||.|.+||||
T Consensus 225 ~Rg~~~~~~--~~~f~It~~Gi~v~---p~~~~~~~~~~~~~r~~tGi~~lD~llggG~~~gs-----~~ll~G~~GsGK 294 (525)
T 1tf7_A 225 LRGTSHMKG--EYPFTITDHGINIF---PLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDS-----IILATGATGTGK 294 (525)
T ss_dssp ETTSCCCCS--EEEEEEETTEEEEC---CTTTCCSCCCCCCCEECCSCHHHHHHTTSSEESSC-----EEEEEECTTSSH
T ss_pred CCCCCCCCC--EEEEEEECCCEEEC---CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCE-----EEEEECCCCCHH
T ss_conf 706877887--69899835850670---56433443335542302488364775279853452-----899836998748
Q ss_pred HHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHCCCCC
Q ss_conf 7999999999998299578478885231001110277034312233430456689999999999999999---8708996
Q gi|254780799|r 468 SVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKM---SKIGVRN 544 (806)
Q Consensus 468 SV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY~l~---a~~~vRn 544 (806)
|...-.++...+-+-. |-+.|.. .+..-.++ +-...+.|-+.+.++.+++- .......
T Consensus 295 T~l~~q~~~~~~~~ge----~vlyis~-------Ee~~~~i~--------~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 355 (525)
T 1tf7_A 295 TLLVSRFVENACANKE----RAILFAY-------EESRAQLL--------RNAYSWGMDFEEMERQNLLKIVCAYPESAG 355 (525)
T ss_dssp HHHHHHHHHHHHTTTC----CEEEEES-------SSCHHHHH--------HHHHTTSCCHHHHHHTTSEEECCCCGGGSC
T ss_pred HHHHHHHHHHHHHCCC----CEEEEEE-------CCCHHHHH--------HHHHHCCCCHHHHHHCCCEEEEEECCCCCC
T ss_conf 9999999999987499----5389982-------58999999--------999981998688876696499980533289
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
Q ss_conf 899999999887447866775446776545432223322323469868776344688887321-0058899999986641
Q gi|254780799|r 545 IDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVAR-KDIESAVQRLAQMARA 623 (806)
Q Consensus 545 i~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~-~~ve~~i~rlaq~ara 623 (806)
++.+=+++.+.. +..-+=+||||=+.-|..... .++...+.+|...+|.
T Consensus 356 ~~~~~~~i~~~i------------------------------~~~~~~~vVIDsl~~l~~~~~~~~~r~~l~~l~~~lk~ 405 (525)
T 1tf7_A 356 LEDHLQIIKSEI------------------------------NDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQ 405 (525)
T ss_dssp HHHHHHHHHHHH------------------------------HTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------------------------------HHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 899999999998------------------------------73398689997576311379989999999999999997
Q ss_pred CCEEEEEEECCCC
Q ss_conf 4237999965777
Q gi|254780799|r 624 SGIHVIMATQRPS 636 (806)
Q Consensus 624 ~GiHli~aTqrPs 636 (806)
.|+..++..|.+.
T Consensus 406 ~g~t~llt~~~~~ 418 (525)
T 1tf7_A 406 EEITGLFTNTSDQ 418 (525)
T ss_dssp TTCEEEEEEECSS
T ss_pred CCCEEEEEEECCC
T ss_conf 7996999981113
No 60
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=88.78 E-value=0.24 Score=28.04 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=21.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 020235530477406799999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~ 476 (806)
.+|-+.|.|.++||||-.||+|+=
T Consensus 25 ~~P~IvVvG~~s~GKSsliNallg 48 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVG 48 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 888799987999979999999968
No 61
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.77 E-value=0.13 Score=30.04 Aligned_cols=60 Identities=28% Similarity=0.365 Sum_probs=28.6
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH-----------HHHHCCCCHHHHCCCCCCHHHHHHH
Q ss_conf 0235530477406799999999999829957847888523100-----------1110277034312233430456689
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML-----------ELSVYDGIPNLLTPVVTNPQKAVTV 522 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v-----------Els~Y~~iPHLl~pVvTd~~kA~~a 522 (806)
+=+.|.|+||||||-- ++=+.--+ ..-.|=.|--+| -..--++|||-|.-+| ||.+--.+
T Consensus 3 kli~i~G~TgsGKS~L--ai~LA~~~-----~geIIsaDSmQvYkgldI~TaK~t~~E~~~vpHhli~~~-~~~~~~~v 73 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQL--SIQLAQKF-----NGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHV-DWSEEYYS 73 (409)
T ss_dssp EEEEEEECSSSSHHHH--HHHHHHHH-----TEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCB-CTTSCCCH
T ss_pred CEEEEECCCHHHHHHH--HHHHHHHC-----CCEEECCCHHHHHCCCCEEECCCCHHHHHCCCEEEECCC-CCCCCCCH
T ss_conf 6799989760449999--99999987-----998981018876199975778999999918996035244-89987379
No 62
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.83 E-value=0.32 Score=27.15 Aligned_cols=183 Identities=22% Similarity=0.342 Sum_probs=93.0
Q ss_pred EECCCCCEEEEEECCCCHHHHHHHHHHHHHHHH---------------CCHHH----EEEEEECCCHHHHHHCCCCHHHH
Q ss_conf 541002023553047740679999999999982---------------99578----47888523100111027703431
Q gi|254780799|r 449 ADLARMPHLLIAGTTGSGKSVAINTMILSLLYR---------------MTPAQ----CRLIMIDPKMLELSVYDGIPNLL 509 (806)
Q Consensus 449 ~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk---------------~~P~e----vkliliDPK~vEls~Y~~iPHLl 509 (806)
.++.+==.+-|.|.+|||||--++.|.- ||+ .++++ +-++.=||-....|+.+.|- +-
T Consensus 30 l~i~~Ge~iaIvG~sGsGKSTLl~ll~g--l~~p~~G~I~i~g~di~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~-~~ 106 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQR--FYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNIS-LA 106 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTT--SSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHT-TT
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC--CCCCCCCEEEECCEECCCCCHHHHHHCEEEEECCCCCCCCCHHHHHH-CC
T ss_conf 9986999999999999829999999977--77489878999999936199899972629993688788874999974-13
Q ss_pred CCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2233430456689999-----999999999999870899689999-9999887447866775446776545432223322
Q gi|254780799|r 510 TPVVTNPQKAVTVLKW-----LVCEMEERYQKMSKIGVRNIDGFN-LKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEH 583 (806)
Q Consensus 510 ~pVvTd~~kA~~aL~w-----~V~EMe~RY~l~a~~~vRni~~yN-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (806)
.|-+++ .+...+++- .|.++...|+-+-..+-+++.|=. +|+.-|++--
T Consensus 107 ~~~~~~-~~~~~~~~~~~~~~~i~~l~~gl~t~i~~~g~~LSgGq~QRlalARal~------------------------ 161 (247)
T 2ff7_A 107 NPGMSV-EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALV------------------------ 161 (247)
T ss_dssp CTTCCH-HHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHT------------------------
T ss_pred CCCCCH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH------------------------
T ss_conf 736998-9999999888898887526445544037877834999999999999997------------------------
Q ss_pred CCCCCCCEEEEEHHHH-HHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCC
Q ss_conf 3234698687763446-888873210058899999986641423799996577753554355411025158764586642
Q gi|254780799|r 584 FDFQHMPYIVVVIDEM-ADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDS 662 (806)
Q Consensus 584 ~~~~~lp~ivviiDEl-aDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dS 662 (806)
.=|- |+|.||- +-|=..+.++|.+.|.++.+ |.-+|+.|.|++. + ..--||.+= |.
T Consensus 162 ----~~p~-illLDEpTs~LD~~~~~~i~~~l~~l~~-----~~Tvi~iTH~l~~------l--~~~DrI~vl-----~~ 218 (247)
T 2ff7_A 162 ----NNPK-ILIFDEATSALDYESEHVIMRNMHKICK-----GRTVIIIAHRLST------V--KNADRIIVM-----EK 218 (247)
T ss_dssp ----TCCS-EEEECCCCSCCCHHHHHHHHHHHHHHHT-----TSEEEEECSSGGG------G--TTSSEEEEE-----ET
T ss_pred ----CCCC-EEEEECCCCCCCHHHHHHHHHHHHHHCC-----CCEEEEEECCHHH------H--HHCCEEEEE-----EC
T ss_conf ----5999-9999698667898999999999998669-----9989999779999------9--859999999-----89
Q ss_pred HHHCCCCCHHHHCCCCCEEE
Q ss_conf 12338864578658875477
Q gi|254780799|r 663 RTILGEQGAEQLLGQGDMLY 682 (806)
Q Consensus 663 rtild~~gae~Llg~gdml~ 682 (806)
=.|..++-.+.|+-+-+-+|
T Consensus 219 G~Iv~~Gt~~eL~~~~~~~y 238 (247)
T 2ff7_A 219 GKIVEQGKHKELLSEPESLY 238 (247)
T ss_dssp TEEEEEECHHHHHTSTTCHH
T ss_pred CEEEEECCHHHHHHCCCCHH
T ss_conf 99999889999983997399
No 63
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell membrane, GTP-binding, ION transport; 2.50A {Legionella pneumophila}
Probab=87.80 E-value=0.3 Score=27.37 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=20.9
Q ss_pred CCEEEEEECCCCHHHHHHHHHH
Q ss_conf 2023553047740679999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI 475 (806)
|.|+++.|-+.+|||--+|++.
T Consensus 1 ~~~v~lvG~pNvGKSTL~N~L~ 22 (256)
T 3iby_A 1 MTHALLIGNPNCGKTTLFNALT 22 (256)
T ss_dssp -CEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 9879998999965999999995
No 64
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis, plasmid; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.69 E-value=0.17 Score=29.14 Aligned_cols=66 Identities=17% Similarity=0.056 Sum_probs=39.1
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH-----------HHHHCCCCHHHHCCCCCCHHHHHHH
Q ss_conf 20235530477406799999999999829957847888523100-----------1110277034312233430456689
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML-----------ELSVYDGIPNLLTPVVTNPQKAVTV 522 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v-----------Els~Y~~iPHLl~pVvTd~~kA~~a 522 (806)
|==++|+|.||||||-.= += |-+.. ..-.|=.|--+| ...-.+++||-|.=++ ||.+..++
T Consensus 1 m~l~~I~GpTasGKS~lA--i~---LA~~~--~~eIIs~DS~QvY~~l~IgTakp~~~e~~~v~H~li~~~-~~~~~~s~ 72 (253)
T 2ze6_A 1 MLLHLIYGPTCSGKTDMA--IQ---IAQET--GWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSR-PLTEGILD 72 (253)
T ss_dssp CEEEEEECCTTSSHHHHH--HH---HHHHH--CCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCC-CGGGCSCC
T ss_pred CEEEEEECCCCCCHHHHH--HH---HHHHC--CCEEEECCHHHHCCCCCEEECCCCHHHHCHHCEEEECCC-CCCCCCCH
T ss_conf 969999798752789999--99---99986--994996134742599986778999789630020101355-86635669
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780799|r 523 LKWLV 527 (806)
Q Consensus 523 L~w~V 527 (806)
=.|+-
T Consensus 73 ~~~~~ 77 (253)
T 2ze6_A 73 AESAH 77 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 65
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural genomics consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=87.67 E-value=0.38 Score=26.58 Aligned_cols=39 Identities=36% Similarity=0.508 Sum_probs=23.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECC
Q ss_conf 235530477406799999999999829957847888523
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDP 494 (806)
+++|..-|||||+.|.---|+..++.......|.+.+-|
T Consensus 68 dviv~apTGsGKT~~~~~~il~~~~~~~~~~~~~lil~P 106 (245)
T 3dkp_A 68 ELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISP 106 (245)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 889987999977589988988755420378846998588
No 66
>2wsm_A Hydrogenase expression/formation protein (HYPB); hydrogenase maturation factor, metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=87.64 E-value=0.4 Score=26.41 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=22.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 002023553047740679999999999
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~Sl 478 (806)
.++|.+-|.|.||+|||-.+|.++-.+
T Consensus 28 ~~~~~V~ivG~pnaGKSTLln~L~~~~ 54 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 598499988899998999999999886
No 67
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, non-SMC subunit, ABC-type ATPase, WHD, ATP; HET: ATG; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=87.57 E-value=0.33 Score=27.10 Aligned_cols=17 Identities=12% Similarity=0.356 Sum_probs=6.2
Q ss_pred HHHHHHHCCEEEEEEEC
Q ss_conf 99866414237999965
Q gi|254780799|r 617 LAQMARASGIHVIMATQ 633 (806)
Q Consensus 617 laq~ara~GiHli~aTq 633 (806)
+.+.....+..++.|+-
T Consensus 434 ~~~~~~~~~~q~~~~~~ 450 (483)
T 3euj_A 434 LFELCERLDMQLLIAAP 450 (483)
T ss_dssp HHHHHHHTTCEEEEEES
T ss_pred HHHHHHHCCCEEEECCC
T ss_conf 99999975987875277
No 68
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=87.15 E-value=0.86 Score=23.94 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=18.0
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 2023553047740679999999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~Sl 478 (806)
-.+.|+.-+||||||+++=.++.-+
T Consensus 128 ~~~~li~~pTGsGKTli~~~l~~~~ 152 (510)
T 2oca_A 128 NRRRILNLPTSAGRSLIQALLARYY 152 (510)
T ss_dssp HSEEEEECCSTTTHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 7986999799807999999999998
No 69
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=87.05 E-value=0.2 Score=28.68 Aligned_cols=66 Identities=20% Similarity=0.407 Sum_probs=39.1
Q ss_pred CCCE-EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH-----------HHHHCCCCHHHHCCCCCCHHHHH
Q ss_conf 0202-35530477406799999999999829957847888523100-----------11102770343122334304566
Q gi|254780799|r 453 RMPH-LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML-----------ELSVYDGIPNLLTPVVTNPQKAV 520 (806)
Q Consensus 453 kMPH-LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v-----------Els~Y~~iPHLl~pVvTd~~kA~ 520 (806)
+.|. +.|+|.||||||-- ++-+. +.- ..-.|=.|--+| -.+-.++|||-|.=++ ||.+--
T Consensus 5 ~kp~li~i~GpTasGKT~l--a~~LA---~~l--~~eIIsaDS~QvYkgl~IgTaKps~~e~~~ipHhlid~~-~p~e~~ 76 (340)
T 3d3q_A 5 TKPFLIVIVGPTASGKTEL--SIEVA---KKF--NGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDIL-PPDASF 76 (340)
T ss_dssp -CCEEEEEECSTTSSHHHH--HHHHH---HHT--TEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCB-CTTSCC
T ss_pred CCCCEEEEECCCCCCHHHH--HHHHH---HHC--CCEEEECCHHHHCCCCCEEECCCCHHHHHCCCEEEEEEE-CCCCCC
T ss_conf 8885699989771358999--99999---987--998994023865499986769999999927997666137-787770
Q ss_pred HHHHHH
Q ss_conf 899999
Q gi|254780799|r 521 TVLKWL 526 (806)
Q Consensus 521 ~aL~w~ 526 (806)
++-.|+
T Consensus 77 sv~~f~ 82 (340)
T 3d3q_A 77 SAYEFK 82 (340)
T ss_dssp CHHHHH
T ss_pred CHHHHH
T ss_conf 398877
No 70
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural genomics, NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii OT3}
Probab=86.94 E-value=0.33 Score=27.08 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=20.7
Q ss_pred CCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 02023553047740679999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI 475 (806)
..|.++|+|.+|+|||.-+|++.
T Consensus 166 ~~~~V~i~G~pnvGKSSLin~l~ 188 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALT 188 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 89889998999971515999983
No 71
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=86.80 E-value=0.57 Score=25.28 Aligned_cols=29 Identities=31% Similarity=0.611 Sum_probs=24.8
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 02023553047740679999999999982
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLYR 481 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLyk 481 (806)
+-||+|.-|.+|+||+-...++.-++...
T Consensus 37 ~~~~~L~~Gp~G~GKttla~~la~~l~~~ 65 (319)
T 2chq_A 37 NIPHLLFSGPPGTGKTATAIALARDLFGE 65 (319)
T ss_dssp CCCCEEEESSSSSSHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 99879988979999999999999973445
No 72
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=86.78 E-value=0.66 Score=24.80 Aligned_cols=28 Identities=43% Similarity=0.643 Sum_probs=24.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 0202355304774067999999999998
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLY 480 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLy 480 (806)
+-||||.-|..|+||+-.+.++.-.++-
T Consensus 45 ~~p~lll~Gp~G~GKTtla~~lak~~~~ 72 (327)
T 1iqp_A 45 SMPHLLFAGPPGVGKTTAALALARELFG 72 (327)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9986987898999999999999999764
No 73
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=86.38 E-value=0.22 Score=28.37 Aligned_cols=63 Identities=22% Similarity=0.478 Sum_probs=36.6
Q ss_pred CCCCEE-EEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHC---------------CCCHHHHCCCCCC
Q ss_conf 002023-553047740679999999999982995784788852310011102---------------7703431223343
Q gi|254780799|r 452 ARMPHL-LIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVY---------------DGIPNLLTPVVTN 515 (806)
Q Consensus 452 akMPHL-LIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y---------------~~iPHLl~pVvTd 515 (806)
..||.+ .|+|.||||||--=-. |-+.- ..-.|=.|--+ +| ++|||-|.=++ |
T Consensus 2 ~~~~~vi~I~GpTasGKt~la~~-----lA~~~--~~eIIsaDS~Q----vYr~l~IgTaKpt~~e~~~i~Hhlid~~-~ 69 (323)
T 3crm_A 2 SSLPPAIFLMGPTAAGKTDLAMA-----LADAL--PCELISVDSAL----IYRGMDIGTAKPSRELLARYPHRLIDIR-D 69 (323)
T ss_dssp -CCCEEEEEECCTTSCHHHHHHH-----HHHHS--CEEEEEECTTT----TBTTCCTTTTCCCHHHHHHSCEETSSCB-C
T ss_pred CCCCCEEEEECCCCCCHHHHHHH-----HHHHC--CCEEEEEEHHH----HCCCCCEEECCCCHHHHHCCCEEEECCC-C
T ss_conf 99996899989771169999999-----99987--99799512487----7299966888999999918997344433-8
Q ss_pred HHHHHHHHHHH
Q ss_conf 04566899999
Q gi|254780799|r 516 PQKAVTVLKWL 526 (806)
Q Consensus 516 ~~kA~~aL~w~ 526 (806)
|.+--++-.|+
T Consensus 70 p~~~~sv~~f~ 80 (323)
T 3crm_A 70 PAESYSAAEFR 80 (323)
T ss_dssp TTSCCCHHHHH
T ss_pred CCCCEEHHHHH
T ss_conf 77677099999
No 74
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=86.26 E-value=0.72 Score=24.52 Aligned_cols=39 Identities=36% Similarity=0.582 Sum_probs=26.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCC---HHHEEEEEECC
Q ss_conf 2355304774067999999999998299---57847888523
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMT---PAQCRLIMIDP 494 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~---P~evkliliDP 494 (806)
|+|++..|||||+.|----++..+++.. ++.++.+.+=|
T Consensus 64 dvl~~a~TGSGKTlayllp~l~~i~~~~~~~~~~~~~lil~p 105 (236)
T 2pl3_A 64 DVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISP 105 (236)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 889980699970288867998754420033456846999758
No 75
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=86.07 E-value=0.68 Score=24.68 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECHH
Q ss_conf 7038999999996598500014222001177899999999977986802-2788726731712
Q gi|254780799|r 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISSM 801 (806)
Q Consensus 740 d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~~ 801 (806)
||.--..+.++...+..+.+-|.+++.+..+...+.++.||+.|+|--. ++..+|.+.+.-.
T Consensus 15 ~p~r~~IL~~L~~~~~~t~~eLa~~l~is~~~vs~~l~~Le~~glV~~~~~~~d~r~~~~~LT 77 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEIT 77 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEEC
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCCCCCEEECCCC
T ss_conf 999999999985189983999999989199899999999985890699874888973100359
No 76
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=86.06 E-value=0.45 Score=26.02 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=13.8
Q ss_pred EEEEEECCCCHHHHHH
Q ss_conf 2355304774067999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAI 471 (806)
Q Consensus 456 HLLIAGtTGSGKSV~i 471 (806)
++||.+.||||||+|-
T Consensus 46 ~vlv~apTGsGKT~~~ 61 (367)
T 1hv8_A 46 NIVAQARTGSGKTASF 61 (367)
T ss_dssp EEEEECCSSSSHHHHH
T ss_pred CEEEECCCCCHHHHHH
T ss_conf 9999889997699999
No 77
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=86.06 E-value=0.82 Score=24.10 Aligned_cols=90 Identities=12% Similarity=0.120 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEE-------EEHHHHHHCCC
Q ss_conf 48988999999999712897421100124556667788888777703899999999659850-------00142220011
Q gi|254780799|r 696 FVSDIEVEKVVSHLKTQGEAKYIDIKDKILLNEEMRFSENSSVADDLYKQAVDIVLRDNKAS-------ISYIQRRLGIG 768 (806)
Q Consensus 696 ~v~~~ev~~v~~~~~~q~~~~y~~~~~~~~~~~~~~~~~~~~~~d~l~~~a~~~v~~~~~~s-------~s~lqr~~~ig 768 (806)
.||.+++.+.++.++..|.+-..-......---. ...+.|..-+..++++-..+..| ++.+.++|.+-
T Consensus 59 liSp~Dl~~A~~~l~~Lg~g~~~l~~~~sg~iv~-----~~~~~~~d~~~il~~~~~~~~~~~~~~~~t~~~~~~~lgws 133 (169)
T 1u5t_B 59 LISPMEMREACERFEHLGLNELKLVKVNKRILCV-----TSEKFDVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWT 133 (169)
T ss_dssp CCCHHHHHHHHTTTGGGTCCSCEEEEETTTEEEE-----ESSCSHHHHHHHHHHHHHSCSBCHHHHHHHHHTSCTTCCCC
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCCCEEEE-----ECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 5799999999999997599857999859868999-----78986768999999998748976777634799999992998
Q ss_pred HHHHHHHHHHHHHCCCCCHHHC
Q ss_conf 7789999999997798680227
Q gi|254780799|r 769 YNRAASIIENMEEKGVIGPASS 790 (806)
Q Consensus 769 y~raar~~~~~e~~giv~~~~g 790 (806)
+.||-.-++.+|.+|.+=--++
T Consensus 134 ~~~a~e~L~~~e~~G~l~rD~~ 155 (169)
T 1u5t_B 134 LGILMEVLQNCVDEGDLLIDKQ 155 (169)
T ss_dssp HHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEECC
T ss_conf 9999999999997799899799
No 78
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=85.83 E-value=0.82 Score=24.07 Aligned_cols=56 Identities=14% Similarity=0.257 Sum_probs=45.5
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCCEEEECHH
Q ss_conf 999999965985000142220011778999999999779868022788726731712
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGKREILISSM 801 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g~~~r~vl~~~~ 801 (806)
+.+++..+..-.++..+++.+.+.|..|.|.+++|++.|++-+..+ |.+.+.+-++
T Consensus 301 ~ll~~l~~~p~~t~~~~~~~~~vs~~Ta~~~l~~L~~~GiL~~~~~-gr~~~y~~~~ 356 (373)
T 2qc0_A 301 ELVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQS-GKEKLFVHPK 356 (373)
T ss_dssp HHHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC---CCSCEEECHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECC-CCCEEEEHHH
T ss_conf 9999999789843999999869899999999999997896798479-9755755499
No 79
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=85.71 E-value=1.3 Score=22.69 Aligned_cols=25 Identities=12% Similarity=0.410 Sum_probs=12.8
Q ss_pred HHHHCCCCC-----HHHCCCCCCCCEEEEE
Q ss_conf 343022100-----0210456666667854
Q gi|254780799|r 426 VFEKNQCDL-----AINLGKSIEGKPIIAD 450 (806)
Q Consensus 426 ~f~~s~~~L-----~iaLGKdI~G~pvv~D 450 (806)
.|++...++ .++.|-||-...+|.+
T Consensus 427 ~F~~G~i~VLVaT~vla~GIDiP~v~vVI~ 456 (1010)
T 2xgj_A 427 LFQEGFLKVLFATETFSIGLNMPAKTVVFT 456 (1010)
T ss_dssp HHHTTCCSEEEEEGGGGGSTTCCBSEEEES
T ss_pred HHHCCCEEEEEECHHHHCCCCCCCEEEEEE
T ss_conf 863697589996328767898788279995
No 80
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=85.25 E-value=0.25 Score=27.95 Aligned_cols=64 Identities=22% Similarity=0.318 Sum_probs=36.7
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH-----------HHHHCCCCHHHHCCCCCCHHHHHHHH
Q ss_conf 0235530477406799999999999829957847888523100-----------11102770343122334304566899
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML-----------ELSVYDGIPNLLTPVVTNPQKAVTVL 523 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v-----------Els~Y~~iPHLl~pVvTd~~kA~~aL 523 (806)
+=+.|+|.||||||-.--. |=+.-+ .-.|=.|--+| -..--++|||-|.=++ ||.+.-++=
T Consensus 4 kii~I~GpTasGKS~la~~-----LA~~~~--~eIIsaDS~QvYk~l~IgTaKps~~e~~~ipHhlid~~-~p~e~~sv~ 75 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVM-----LAKRLN--GEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIK-DPSESFSVA 75 (322)
T ss_dssp EEEEEECCTTSCHHHHHHH-----HHHTTT--EEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCB-CTTSCCCHH
T ss_pred CEEEEECCCCCCHHHHHHH-----HHHHCC--CEEEEEEHHHHCCCCCEEECCCCHHHHHCCCEEEECCC-CCCCCEEHH
T ss_conf 6799989872169999999-----999879--96996212765499976778999999907997741573-788742299
Q ss_pred HHH
Q ss_conf 999
Q gi|254780799|r 524 KWL 526 (806)
Q Consensus 524 ~w~ 526 (806)
.|+
T Consensus 76 ~f~ 78 (322)
T 3exa_A 76 DFQ 78 (322)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 878
No 81
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.96 E-value=0.47 Score=25.88 Aligned_cols=27 Identities=33% Similarity=0.696 Sum_probs=23.3
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 020235530477406799999999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLL 479 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlL 479 (806)
.+||||+-|-.|+||+-.+.++.-.|+
T Consensus 35 ~~~~lLl~Gp~G~GKTt~a~~la~~l~ 61 (354)
T 1sxj_E 35 DLPHLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 877598889799989999999999865
No 82
>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV}
Probab=84.89 E-value=0.96 Score=23.56 Aligned_cols=58 Identities=14% Similarity=0.285 Sum_probs=47.2
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECHHH
Q ss_conf 9999999659850001422200117789999999997798680227-887267317125
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISSME 802 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~~~ 802 (806)
.++.++.+.+..+.+-|-+++.|-.+.+.|+++.||++|+|-...+ ...|.+++.-.+
T Consensus 49 ~vL~~l~~~~~~~~~eLa~~l~i~~~~vs~~l~~Le~~GlV~r~~~~~D~R~~~i~LT~ 107 (168)
T 2nyx_A 49 RTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTK 107 (168)
T ss_dssp HHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECH
T ss_conf 99999996799699999999896988999999998164427865337788547887788
No 83
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=84.78 E-value=0.21 Score=28.48 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=28.5
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHC
Q ss_conf 023553047740679999999999982995784788852310011102
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVY 502 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y 502 (806)
|..++.|.+|+|||--+|.+...=....+|.......++.+-..+.+|
T Consensus 49 p~V~ivG~~n~GKTSLl~~l~~~~~~~t~t~~~~~~~~~~~~~~i~l~ 96 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLV 96 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSCC------------CCCCTTCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCEEECCEEEEEEECCEEEEEE
T ss_conf 689999999999899999995697488166730079999689089998
No 84
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=84.25 E-value=0.3 Score=27.38 Aligned_cols=53 Identities=28% Similarity=0.320 Sum_probs=31.2
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH-----------HHHHCCCCHHHHCCCCC
Q ss_conf 0235530477406799999999999829957847888523100-----------11102770343122334
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML-----------ELSVYDGIPNLLTPVVT 514 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v-----------Els~Y~~iPHLl~pVvT 514 (806)
+=+.|+|.||||||-- .=-|-+.-+ .-.|=.|--.| ...-.++|||-|.=++.
T Consensus 41 kvI~I~GpTasGKT~l-----Ai~LA~~l~--~eIIsaDS~QvYk~ldIgTaKpt~~e~~~vpHhLid~v~ 104 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL-----SIDLAAHFP--LEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVD 104 (339)
T ss_dssp EEEEEECSTTSSHHHH-----HHHHHTTSC--EEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBC
T ss_pred CEEEEECCCCCCHHHH-----HHHHHHHCC--CEEEECCCHHHCCCCCEEECCCCHHHHCCCCEEEEEEEE
T ss_conf 6799989884289999-----999999879--979952306426999748899999998389979998997
No 85
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=83.86 E-value=1.2 Score=22.78 Aligned_cols=52 Identities=25% Similarity=0.351 Sum_probs=40.4
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCCEE
Q ss_conf 9999999659850001422200117789999999997798680227887267
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGKREI 796 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g~~~r~v 796 (806)
.++--...+|--|||++||+|.+-..||-.++-+||.+|-|-.-+=++.--+
T Consensus 14 ~~il~lladgCktts~I~~~Lg~sh~~A~~~ly~Lakeg~V~~v~ig~~aiw 65 (165)
T 2vxz_A 14 RDILALLADGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVALV 65 (165)
T ss_dssp HHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTEEEE
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCEEEE
T ss_conf 9999999754508999999826508999999999986681699986344799
No 86
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii OT3} SCOP: c.37.1.8
Probab=83.85 E-value=0.63 Score=24.97 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.5
Q ss_pred CCEEEEEECCCCHHHHHHHHHH
Q ss_conf 2023553047740679999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI 475 (806)
|+-..+.|.||+|||--+|++.
T Consensus 1 ~~~I~lvG~~n~GKStLin~L~ 22 (190)
T 2cxx_A 1 MATIIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp -CEEEEEEBTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 9889998999986999999996
No 87
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP PSI; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=83.83 E-value=0.58 Score=25.21 Aligned_cols=27 Identities=33% Similarity=0.725 Sum_probs=22.3
Q ss_pred ECCCCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 410020235530477406799999999
Q gi|254780799|r 450 DLARMPHLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 450 DLakMPHLLIAGtTGSGKSV~iN~iI~ 476 (806)
..||+|=+.|.|.+||||+--++.++-
T Consensus 8 ~m~k~p~Ivl~GpsGsGK~tl~~~L~~ 34 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 547898189999999999999999997
No 88
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=83.40 E-value=0.77 Score=24.29 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00134678999999999999999999999999999982
Q gi|254780799|r 65 NFLGYGGAIFADVAIQFFGIASVFFLPPPTMWALSLLF 102 (806)
Q Consensus 65 N~~G~lGA~iAd~L~~lFG~~Ayllpl~Ll~~g~~ll~ 102 (806)
+-.|..+.-..++++..|++..+++.+.+++..+.+++
T Consensus 31 ~P~G~~a~~~~~L~~~~~~l~l~V~v~v~~~~~~~~~r 68 (315)
T 1fft_B 31 DPKGQIGLEQRSLILTAFGLMLIVVIPAILMAVGFAWK 68 (315)
T ss_dssp SCCSCCHHHHHHHHHHHHHHTTTTTTHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_conf 99997899999999999999776776766643003467
No 89
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=83.30 E-value=2.2 Score=20.93 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHCCCCEEEEE
Q ss_conf 78999999742486328998
Q gi|254780799|r 335 NACTLKSVLSDFGIQGEIVN 354 (806)
Q Consensus 335 nA~lLE~tL~dFGVe~~Vv~ 354 (806)
.++.+++.|...||...+.+
T Consensus 363 ~~~~le~~L~~~~Ip~~~~~ 382 (724)
T 1pjr_A 363 QSRVMEEMLLKANIPYQIVG 382 (724)
T ss_dssp GHHHHHHHHHHTTCCEEEET
T ss_pred HHHHHHHHHHHCCCCEEEEC
T ss_conf 79999999998799999968
No 90
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, cytoplasm, nucleotide- binding, hydrolase; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=83.11 E-value=2.2 Score=20.88 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=28.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCH
Q ss_conf 23553047740679999999999982995784788852310
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKM 496 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~ 496 (806)
++|+-|..|+|||..+.++-..+ .+.++.|++-.
T Consensus 53 giLL~GppGtGKT~la~~iA~~~-------~~~~~~i~~s~ 86 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATET-------NATFIRVVGSE 86 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHT-------TCEEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHC-------CCCEEEEEHHH
T ss_conf 57887989998779999999980-------99868988899
No 91
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.91 E-value=0.71 Score=24.56 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=26.5
Q ss_pred CCCCE-EEEEECCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 00202-355304774067999999999998299
Q gi|254780799|r 452 ARMPH-LLIAGTTGSGKSVAINTMILSLLYRMT 483 (806)
Q Consensus 452 akMPH-LLIAGtTGSGKSV~iN~iI~SlLyk~~ 483 (806)
.++|| +|+-|..|+||+.....+.-.|+....
T Consensus 42 ~~~~~~~L~~Gp~G~GKt~~a~~~~~~l~~~~~ 74 (250)
T 1njg_A 42 GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 74 (250)
T ss_dssp TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 997605987899998789999999998478556
No 92
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=82.90 E-value=0.23 Score=28.29 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCC--CEEEEEECCCCCCHHHCC
Q ss_conf 05889999998664142379999657775355435541102--515876458664212338
Q gi|254780799|r 609 DIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFP--TRISFQVSSKIDSRTILG 667 (806)
Q Consensus 609 ~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p--~riaf~v~s~~dSrtild 667 (806)
..-..+.+|.++++..+++.++.+|.-+.. .......+-+ .........-+|.|..|.
T Consensus 148 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~ 207 (243)
T 1n0w_A 148 HLARFLRMLLRLADEFGVAVVITNQVVAQV-DGAAMFAADPKKPIGGNIIAHASTTRLYLR 207 (243)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCEEEEEEEEEEEC-CCCCCCCCCCCCCCCCCHHHHHCCEEEEEE
T ss_conf 999999999999986066299999998402-666422333312343003377495999999
No 93
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=82.72 E-value=2.3 Score=20.77 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHH
Q ss_conf 89889999999997128974211001245566677888887777038999999996598500014222001177899999
Q gi|254780799|r 697 VSDIEVEKVVSHLKTQGEAKYIDIKDKILLNEEMRFSENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASII 776 (806)
Q Consensus 697 v~~~ev~~v~~~~~~q~~~~y~~~~~~~~~~~~~~~~~~~~~~d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~ 776 (806)
||.++|.+-++.|+.=+-+.-.. + . ...--. .-..+.+.-...+.+++-..+-+|.+.|+++|+.--.||-.-+
T Consensus 129 iS~~Di~~Ai~~L~~L~g~~v~~-i---~-gk~~V~-Svp~els~D~~~vL~~a~~~g~vt~~~L~~~lgWs~~ra~~~L 202 (233)
T 1u5t_A 129 VGLDDLEKSIDMLKSLECFEIFQ-I---R-GKKFLR-SVPNELTSDQTKILEICSILGYSSISLLKANLGWEAVRSKSAL 202 (233)
T ss_dssp CCHHHHHHHHHHHTTTCCCCEEE-E---T-TEEEEC-CSSSCCCTTHHHHHHTTTTTSCCBHHHHHHHHCCCSHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCEEEE-E---C-CEEEEE-ECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999999975066976999-8---9-989999-2776775689999999986699389999989698999999999
Q ss_pred HHHHHCCCCCHHHC
Q ss_conf 99997798680227
Q gi|254780799|r 777 ENMEEKGVIGPASS 790 (806)
Q Consensus 777 ~~~e~~giv~~~~g 790 (806)
|.|+.+|++=--+.
T Consensus 203 ~~l~~~GllwvD~q 216 (233)
T 1u5t_A 203 DEMVANGLLWIDYQ 216 (233)
T ss_dssp HHHHHTTSSEEECS
T ss_pred HHHHHCCCEEEECC
T ss_conf 99997799899789
No 94
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis 89}
Probab=82.66 E-value=1.3 Score=22.70 Aligned_cols=56 Identities=23% Similarity=0.318 Sum_probs=38.8
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECH
Q ss_conf 99999996598500014222001177899999999977986802-278872673171
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISS 800 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~ 800 (806)
..+..+...+-.+.+-|.+++.+-.+...|+++.||++|.|--. +....|.+++.-
T Consensus 35 ~vL~~l~~~~~~t~~~la~~l~i~~~tvs~~v~~L~~~gli~r~~~~~D~R~~~i~l 91 (142)
T 3bdd_A 35 SILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWP 91 (142)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEE
T ss_conf 999999877998999999998969868999999998589878448999989668788
No 95
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=82.58 E-value=0.73 Score=24.45 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=18.9
Q ss_pred CCE-EEEEECCCCHHHHHHHHHHHH
Q ss_conf 202-355304774067999999999
Q gi|254780799|r 454 MPH-LLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 454 MPH-LLIAGtTGSGKSV~iN~iI~S 477 (806)
|+. ++|.|.+|||||--.+.+...
T Consensus 1 Mk~iI~i~G~pGsGKSTla~~L~~~ 25 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9889999899999989999999985
No 96
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=82.55 E-value=0.4 Score=26.43 Aligned_cols=20 Identities=35% Similarity=0.655 Sum_probs=17.2
Q ss_pred CCCCEEEEEECCCCHHHHHH
Q ss_conf 00202355304774067999
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAI 471 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~i 471 (806)
-+||+++|.|..|||||.--
T Consensus 9 ~~~pnI~i~G~pG~GKTTia 28 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHH
T ss_pred HCCCCEEEECCCCCCHHHHH
T ss_conf 60895799899998889999
No 97
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=82.24 E-value=1.8 Score=21.60 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 202355304774067999999999998299578478885231
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
-.+.++.=+||||||+.+-.++..+..+. ..|.+.|=|.
T Consensus 128 ~~~~il~~pTGsGKT~i~~~i~~~~~~~~---~~k~Liivp~ 166 (282)
T 1rif_A 128 NRRRILNLPTSAGRSLIQALLARYYLENY---EGKILIIVPT 166 (282)
T ss_dssp HSEEEECCCTTSCHHHHHHHHHHHHHHHC---SSEEEEECSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCC---CCCEEEEECC
T ss_conf 49829985788977899999999743136---7508999797
No 98
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=82.14 E-value=1.4 Score=22.35 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=26.3
Q ss_pred CCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 6666785410020235530477406799999999999829
Q gi|254780799|r 443 EGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRM 482 (806)
Q Consensus 443 ~G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~ 482 (806)
.+..++.|+.+ .=-+|.|.+|||||--+.||-..|--++
T Consensus 16 ~~~~~~~~f~~-g~~~I~G~NGsGKSsildAi~~~l~g~~ 54 (182)
T 3kta_A 16 GNKKVVIPFSK-GFTAIVGANGSGKSNIGDAILFVLGGLS 54 (182)
T ss_dssp CSSCEEEECCS-SEEEEEECTTSSHHHHHHHHHHHTTCCC
T ss_pred CCCEEEECCCC-CCEEEECCCCCCCHHHHHHHHHHCCCCC
T ss_conf 69889972799-9579999999972147677786416420
No 99
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A*
Probab=81.82 E-value=1.2 Score=22.77 Aligned_cols=39 Identities=23% Similarity=0.402 Sum_probs=23.1
Q ss_pred CCCEEE-EEECCCCHHHHHHHHHHHHHHHHCCHHH--EEEEEEC
Q ss_conf 020235-5304774067999999999998299578--4788852
Q gi|254780799|r 453 RMPHLL-IAGTTGSGKSVAINTMILSLLYRMTPAQ--CRLIMID 493 (806)
Q Consensus 453 kMPHLL-IAGtTGSGKSV~iN~iI~SlLyk~~P~e--vkliliD 493 (806)
+.|=++ |||..|||||..-+.+-. +++..+.. |-+|=.|
T Consensus 88 ~~PfIIGIaG~sgSGKST~a~~L~~--lL~~~~~~~~v~~is~D 129 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA--LLARWDHHPRVDLVTTD 129 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH--HHHTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHHHHCCCCCEEEEECC
T ss_conf 9988999889898789999999999--98530789965999555
No 100
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=81.38 E-value=2.4 Score=20.63 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=34.2
Q ss_pred CCEEEEEHHHHHHH--HHHCCCHHHHHHHHHHHHHHH----CCEEEEEEECCCCCCCCCHHHHHC
Q ss_conf 98687763446888--873210058899999986641----423799996577753554355411
Q gi|254780799|r 589 MPYIVVVIDEMADL--MMVARKDIESAVQRLAQMARA----SGIHVIMATQRPSVDVITGTIKAN 647 (806)
Q Consensus 589 lp~ivviiDElaDl--mm~~~~~ve~~i~rlaq~ara----~GiHli~aTqrPsvdvitg~ikan 647 (806)
+|-.-|||+-+--. -...+...+++++|..--+|+ .|.=.|+.+..+.......++++.
T Consensus 546 iP~~~vVi~~~~k~d~~~~~~~t~~~y~Q~~GRAGR~G~D~~G~~iil~~~~~~~~~~~~l~~~~ 610 (1108)
T 3l9o_A 546 MPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQ 610 (1108)
T ss_dssp C--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCC
T ss_pred CCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHCC
T ss_conf 78717999546535775556699999999971578899988538999957985788999998269
No 101
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=81.38 E-value=0.78 Score=24.27 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=17.4
Q ss_pred EEEEECCCCHHHHHHHHHHH
Q ss_conf 35530477406799999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~ 476 (806)
+++=|.||+|||--+|+|.=
T Consensus 32 I~liG~~g~GKSSl~N~L~g 51 (239)
T 3lxx_A 32 IVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999839999999959
No 102
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP- binding, ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=81.32 E-value=1.1 Score=23.03 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=23.4
Q ss_pred CCCCEEEEEEC-CCCHHHHHHHHHHHHHHHH
Q ss_conf 00202355304-7740679999999999982
Q gi|254780799|r 452 ARMPHLLIAGT-TGSGKSVAINTMILSLLYR 481 (806)
Q Consensus 452 akMPHLLIAGt-TGSGKSV~iN~iI~SlLyk 481 (806)
|.|=.|.|+|| ||.|||+.--.+.-.|-.+
T Consensus 24 ~~M~~lfItGT~TgVGKT~Vs~~L~~aL~~~ 54 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQA 54 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 0598689986999961999999999999968
No 103
>1es6_A Matrix protein VP40; beta sandwich, anti-parallel strands, beta sheet, helix, viral protein; 2.00A {Ebola virus SP} SCOP: b.31.1.1 b.31.1.1 PDB: 1h2d_A
Probab=81.02 E-value=0.37 Score=26.66 Aligned_cols=19 Identities=37% Similarity=0.805 Sum_probs=13.7
Q ss_pred CCCCCC-CCCCEEEEEECCC
Q ss_conf 210003-8861255530245
Q gi|254780799|r 393 ARVAVI-PRRNAIGIELPND 411 (806)
Q Consensus 393 vRIapI-PGK~~VGIEiPN~ 411 (806)
..|+|| |-|+.+|||||..
T Consensus 217 ~kivpidptk~i~gievpe~ 236 (296)
T 1es6_A 217 FKIVPIDPTKNIMGIEVPET 236 (296)
T ss_dssp CEEEEEEGGGTEEEEECCHH
T ss_pred CEEEECCCCCCEEEECCHHH
T ss_conf 50661277555101011899
No 104
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=80.97 E-value=1.9 Score=21.37 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=20.7
Q ss_pred HHHHHCCCEEEEHHHHHHC---------------CCHHHHHHHHHHHHHCCCCCHHHC
Q ss_conf 9999659850001422200---------------117789999999997798680227
Q gi|254780799|r 748 DIVLRDNKASISYIQRRLG---------------IGYNRAASIIENMEEKGVIGPASS 790 (806)
Q Consensus 748 ~~v~~~~~~s~s~lqr~~~---------------igy~raar~~~~~e~~giv~~~~g 790 (806)
++.-..++...+.++.|++ ||=.||-+ |-+.||-++.+=
T Consensus 606 ~~~~~~~~~~l~~l~~rl~~gv~~e~~~L~~i~~v~~~~ar~----L~~~g~~s~~~i 659 (702)
T 2p6r_A 606 RIAEEVGNTSVSGLTERIKHGVKEELLELVRIRHIGRVRARK----LYNAGIRNAEDI 659 (702)
T ss_dssp HHHHHTTCCSSTTHHHHHHHTCCGGGHHHHTSTTCCHHHHHH----HHTTTCCSHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHH----HHHCCCCCHHHH
T ss_conf 999973889899999999849984169670889999999999----998799999999
No 105
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=80.95 E-value=0.76 Score=24.34 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=12.1
Q ss_pred EEEEEECCCCHHHHHH
Q ss_conf 2355304774067999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAI 471 (806)
Q Consensus 456 HLLIAGtTGSGKSV~i 471 (806)
++||.+-||||||.|-
T Consensus 66 dvlv~apTGsGKTl~f 81 (412)
T 3fht_A 66 NLIAQSQSGTGKTAAF 81 (412)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred CEEEECCCCCHHHHHH
T ss_conf 8899899995789999
No 106
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=80.56 E-value=0.52 Score=25.58 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH-CCCCCEEEECHHHHHC
Q ss_conf 389999999965985000142220011778999999999779868022-7887267317125304
Q gi|254780799|r 742 LYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPAS-STGKREILISSMEECH 805 (806)
Q Consensus 742 l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~-g~~~r~vl~~~~~~~~ 805 (806)
+-+..++++.+.+..|+.-+++.+.+..+.|-|+++.|.++|+|-+-. |-+.|=.|+..|...|
T Consensus 517 ~~~~Il~~l~~~g~it~~ei~~llgls~~~v~~~L~~L~~~G~I~~~G~gR~~~Y~L~~~~~~~~ 581 (583)
T 3lmm_A 517 LTNAAMLWLSEVGDLATSDLMAMCGVSRGTAKACVDGLVDEERVVAVGGGRSRRYRLVELEHHHH 581 (583)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEECCCCC
T ss_conf 99999999997599389999999787999999999999988977886688774899986213445
No 107
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=80.39 E-value=0.91 Score=23.74 Aligned_cols=27 Identities=26% Similarity=0.478 Sum_probs=20.2
Q ss_pred EECCCCCEE-EEEECCCCHHHHHHHHHH
Q ss_conf 541002023-553047740679999999
Q gi|254780799|r 449 ADLARMPHL-LIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 449 ~DLakMPHL-LIAGtTGSGKSV~iN~iI 475 (806)
++=..+||+ ++.|..|||||--.+.+-
T Consensus 2 ~~~~~~~~i~~l~G~~GsGKST~a~~La 29 (175)
T 1knq_A 2 STTNHDHHIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp -CCCTTSEEEEEECSTTSCHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 9889998189998799999899999999
No 108
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum 3D7}
Probab=80.30 E-value=0.93 Score=23.67 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=20.0
Q ss_pred CCEEEEEECCCCHHHHHHHHHH
Q ss_conf 2023553047740679999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI 475 (806)
+|.+.|.|.+++|||--+|++.
T Consensus 29 ~~~V~lvG~~nvGKSSLln~L~ 50 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVS 50 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 9999999999985999999984
No 109
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics, NPPSFA; HET: GDP; 1.96A {Thermus thermophilus HB8}
Probab=80.24 E-value=0.99 Score=23.49 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.3
Q ss_pred CCEEEEEECCCCHHHHHHHHHH
Q ss_conf 2023553047740679999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI 475 (806)
|+-..+.|.+|+|||.-+|++.
T Consensus 1 M~kI~lvG~~nvGKSsLin~l~ 22 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHH
T ss_conf 9889998999971999999997
No 110
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=80.15 E-value=0.98 Score=23.51 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=17.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 020235530477406799999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~ 476 (806)
+.+++=|-|-+.+|||--+|+++=
T Consensus 179 ~~~~iaiiGrPNvGKStL~N~L~g 202 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILN 202 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 742699973898868999999849
No 111
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=80.13 E-value=0.99 Score=23.49 Aligned_cols=30 Identities=33% Similarity=0.429 Sum_probs=26.0
Q ss_pred CCCCE-EEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 00202-3553047740679999999999982
Q gi|254780799|r 452 ARMPH-LLIAGTTGSGKSVAINTMILSLLYR 481 (806)
Q Consensus 452 akMPH-LLIAGtTGSGKSV~iN~iI~SlLyk 481 (806)
.+.|| +|+-|..|+||..+...+.-.|+..
T Consensus 21 ~~l~ha~L~~G~~G~GK~~~a~~~a~~llc~ 51 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9956036358999988999999999997087
No 112
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=79.84 E-value=1 Score=23.40 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=31.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHH---------EEEEEECCCHHHHHHCC
Q ss_conf 2355304774067999999999998299578---------47888523100111027
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQ---------CRLIMIDPKMLELSVYD 503 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~e---------vkliliDPK~vEls~Y~ 503 (806)
-++|.|..|+|||-.+|.++. ..-+++ .+-+.+|.+++++.+++
T Consensus 23 Ki~viG~~~vGKTSli~~~~~----~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D 75 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT----KRFISEYDPNLEDTYSSEETVDHQPVHLRVMD 75 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH----SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH----CCCCCCCCCCCCEEEEEEEEECCEEEEEEEEE
T ss_conf 999999899889999999973----99888779964467777698899899999984
No 113
>2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} SCOP: a.4.5.11 c.37.1.20
Probab=79.76 E-value=2.8 Score=20.06 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=27.1
Q ss_pred EEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCC
Q ss_conf 687763446888873210058899999986641423799996577
Q gi|254780799|r 591 YIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRP 635 (806)
Q Consensus 591 ~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrP 635 (806)
.+|+++||+-.+--...+++...+.++.+.- ..+.+|+++-++
T Consensus 138 ~~~i~~de~~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~~~~~~ 180 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNL--KRIKFIMSGSEM 180 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHC--TTEEEEEEESSH
T ss_pred CCCCCCCHHHHHHCCCHHHHHHHHHHHHHHC--CCCEEEEECCCH
T ss_conf 5434551588873011599999999999852--675046532540
No 114
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, disease mutation, mitochondrion, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=79.51 E-value=2 Score=21.20 Aligned_cols=37 Identities=27% Similarity=0.394 Sum_probs=31.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 355304774067999999999998299578478885231
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
+=|.|.-|+|||-.|+.++.-++.+ ...|=-+-+||-
T Consensus 77 IGitG~PGaGKStli~~l~~~~~~~--g~~vaVla~Dps 113 (349)
T 2www_A 77 VGLSGPPGAGKSTFIEYFGKMLTER--GHKLSVLAVDPS 113 (349)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEECCC-
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHC--CCEEEEEECCCC
T ss_conf 8621799988999999999999847--971789957878
No 115
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=79.26 E-value=1.2 Score=22.83 Aligned_cols=54 Identities=15% Similarity=0.384 Sum_probs=31.2
Q ss_pred HHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEEC
Q ss_conf 9999996598500014222001177899999999977986802-27887267317
Q gi|254780799|r 746 AVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILIS 799 (806)
Q Consensus 746 a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~ 799 (806)
+..++...+..+.+-|-+++.+--+.+.|+++.||++|+|--. +..-.|.+++.
T Consensus 52 vL~~l~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~r~~~~~D~R~~~l~ 106 (153)
T 2pex_A 52 VMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIA 106 (153)
T ss_dssp HHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEE
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEE
T ss_conf 9999984799899999999896886899999999988998981189988747878
No 116
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50
Probab=79.22 E-value=1.7 Score=21.71 Aligned_cols=45 Identities=13% Similarity=0.227 Sum_probs=40.1
Q ss_pred HHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 999999996598500014222001177899999999977986802
Q gi|254780799|r 744 KQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA 788 (806)
Q Consensus 744 ~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~ 788 (806)
-.+...+...+.++++-|.+++.+--....|+++.||+.|+|--.
T Consensus 23 ~~v~~~L~~~~~~t~~eia~~~~~~~~~v~~~l~~L~~~Glv~r~ 67 (109)
T 1sfx_A 23 VRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 999999980488879999999756701899999999959997987
No 117
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10
Probab=79.13 E-value=3 Score=19.92 Aligned_cols=79 Identities=22% Similarity=0.329 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHCCCCCHHHHCCCCCEEEECCCC
Q ss_conf 00588999999866414237999965777535543554110251587645866421233886457865887547736898
Q gi|254780799|r 608 KDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQGAEQLLGQGDMLYMTGGG 687 (806)
Q Consensus 608 ~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtild~~gae~Llg~gdml~~~~~~ 687 (806)
.++.+.|.+| |+.|+++++||=||--++..-+-+-+++.- ++-.+|| .+|- +.+
T Consensus 24 ~~~~~~i~~l----~~~Gi~~~i~TGR~~~~~~~~~~~~~~~~~-------------~i~~nGa--------~i~~-~~~ 77 (288)
T 1nrw_A 24 LENENALRQA----QRDGIEVVVSTGRAHFDVMSIFEPLGIKTW-------------VISANGA--------VIHD-PEG 77 (288)
T ss_dssp HHHHHHHHHH----HHTTCEEEEECSSCHHHHHHHHGGGTCCCE-------------EEEGGGT--------EEEC-TTC
T ss_pred HHHHHHHHHH----HHCCCEEEEECCCCHHHHHHHHHHHCCCCE-------------EEECCCC--------EEEC-CCC
T ss_conf 9999999999----978999999979998999999998199813-------------9966832--------7981-787
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCC
Q ss_conf 325888334898899999999971289
Q gi|254780799|r 688 RVQRIHGPFVSDIEVEKVVSHLKTQGE 714 (806)
Q Consensus 688 ~~~r~~g~~v~~~ev~~v~~~~~~q~~ 714 (806)
++. +-..++.+.+.++++++..++-
T Consensus 78 ~~i--~~~~l~~~~~~~i~~~~~~~~~ 102 (288)
T 1nrw_A 78 RLY--HHETIDKKRAYDILSWLESENY 102 (288)
T ss_dssp CEE--EECCCCHHHHHHHHHHHHHTTC
T ss_pred CEE--EECCCCHHHHHHHHHHHHHCCC
T ss_conf 356--6417878999999999997696
No 118
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic transport, mRNA export, protein interaction; HET: ADP; 3.19A {Homo sapiens}
Probab=78.94 E-value=0.8 Score=24.16 Aligned_cols=15 Identities=33% Similarity=0.685 Sum_probs=13.2
Q ss_pred EEEEEECCCCHHHHH
Q ss_conf 235530477406799
Q gi|254780799|r 456 HLLIAGTTGSGKSVA 470 (806)
Q Consensus 456 HLLIAGtTGSGKSV~ 470 (806)
++|+...|||||+.|
T Consensus 133 dvlv~apTGSGKTla 147 (479)
T 3fmp_B 133 NLIAQSQSGTGKTAA 147 (479)
T ss_dssp EEEEECCSSSSHHHH
T ss_pred CEEEECCCCCHHHHH
T ss_conf 589984898379999
No 119
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane structure, membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=78.83 E-value=3 Score=19.86 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=20.7
Q ss_pred HHHHCCCCEEEEEEEECCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 974248632899841044244444321478639999978899998863001210
Q gi|254780799|r 342 VLSDFGIQGEIVNVRPGPVITLYELEPAPGIKSSRIIGLSDDIARSMSAISARV 395 (806)
Q Consensus 342 tL~dFGVe~~Vv~v~pGPVVTrYEi~PApGVKvSKI~nLadDIA~aLsa~svRI 395 (806)
.+.+....+.+.++...=+.-+..+.-.++-.-+--..+-..|-+++....|.+
T Consensus 215 ~~~~~~~~v~~~~~~~~~i~~~v~~~v~~~~~~~~~~~l~~~I~~~l~~~gI~i 268 (286)
T 2vv5_A 215 ILKDREMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISF 268 (286)
T ss_dssp BCTTSCEEEEEEEECSSSEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCEEEEEECCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 015678558881037855999999998527899999999999999999879727
No 120
>2gno_A DNA polymerase III, gamma subunit-related protein; TM0771, structural genomics, PSI, protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima MSB8} SCOP: a.80.1.1 c.37.1.20
Probab=78.75 E-value=2.5 Score=20.45 Aligned_cols=112 Identities=18% Similarity=0.186 Sum_probs=66.0
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHH--CCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 1002023553047740679999999999982--99578478885231001110277034312233430456689999999
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTMILSLLYR--MTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVC 528 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~iI~SlLyk--~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~ 528 (806)
-.+-||||+-|.-|+||+--..++.-.+... .+|| ++.|+|-- +.| . |+
T Consensus 15 ~~~~~~~~~~g~~g~gk~~~~~~~~~~i~~~~~~HpD---~~~i~~e~------~~I-----~---------------Id 65 (305)
T 2gno_A 15 KSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD---VLEIDPEG------ENI-----G---------------ID 65 (305)
T ss_dssp TCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT---EEEECCSS------SCB-----C---------------HH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC---EEEEECCC------CCC-----C---------------HH
T ss_conf 6999749888999988799999999997365677998---89870776------789-----9---------------89
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCC-
Q ss_conf 9999999998708996899999999887447866775446776545432223322323469868776344688887321-
Q gi|254780799|r 529 EMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVAR- 607 (806)
Q Consensus 529 EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~- 607 (806)
+ ||++..+= ... |. .=+|=|||||| ||.|-...
T Consensus 66 ~------------IR~l~~~~------~~~-------------p~--------------~~~~KVvIId~-ad~lt~~Aa 99 (305)
T 2gno_A 66 D------------IRTIKDFL------NYS-------------PE--------------LYTRKYVIVHD-CERMTQQAA 99 (305)
T ss_dssp H------------HHHHHHHH------TSC-------------CS--------------SSSSEEEEETT-GGGBCHHHH
T ss_pred H------------HHHHHHHH------HHC-------------CC--------------CCCCEEEEEEC-HHHCCHHHH
T ss_conf 9------------99999999------535-------------53--------------58966999857-554299999
Q ss_pred ----CHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCC
Q ss_conf ----00588999999866414237999965777535543554110
Q gi|254780799|r 608 ----KDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANF 648 (806)
Q Consensus 608 ----~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~ 648 (806)
|-.|++ ..+...||.|..|+ -|=.+|++=.
T Consensus 100 NaLLK~LEEP---------p~~t~fIL~t~~~~--kilpTI~SRC 133 (305)
T 2gno_A 100 NAFLKALEEP---------PEYAVIVLNTRRWH--YLLPTIKSRV 133 (305)
T ss_dssp HHTHHHHHSC---------CTTEEEEEEESCGG--GSCHHHHTTS
T ss_pred HHHHHHHHCC---------CCCCEEEEEECCCC--CCCCHHHCCE
T ss_conf 9999997479---------97705875205742--4763003103
No 121
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=78.45 E-value=1.2 Score=22.98 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=19.5
Q ss_pred EECCCCCEEEE--EECCCCHHHHHHHHHH
Q ss_conf 54100202355--3047740679999999
Q gi|254780799|r 449 ADLARMPHLLI--AGTTGSGKSVAINTMI 475 (806)
Q Consensus 449 ~DLakMPHLLI--AGtTGSGKSV~iN~iI 475 (806)
+-++.+|-++| .|..|||||-+-|-+.
T Consensus 4 ~~~~~~pk~II~ItG~~GSGKsTva~~L~ 32 (202)
T 3ch4_B 4 APLGGAPRLVLLFSGKRKSGKDFVTEALQ 32 (202)
T ss_dssp CTTBCCCSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 99999983899988979999999999999
No 122
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3}
Probab=78.15 E-value=1.6 Score=21.94 Aligned_cols=58 Identities=10% Similarity=0.089 Sum_probs=44.7
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECHHH
Q ss_conf 9999999659850001422200117789999999997798680227-887267317125
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISSME 802 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~~~ 802 (806)
.++..+-+.+-.+.+-|.+++.+.-.-..|+++.||++|+|-...+ .-.|.+++...+
T Consensus 44 ~vL~~l~~~~~~t~~~La~~l~~~~~~is~~l~~L~~~gli~r~~~~~D~R~~~i~LT~ 102 (152)
T 3bj6_A 44 AILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTP 102 (152)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCH
T ss_conf 99999998799899999999896987999999999988997742499889845342589
No 123
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=77.94 E-value=1.3 Score=22.68 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 002023553047740679999999
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI 475 (806)
..|+...+.|-+++|||--+|+++
T Consensus 3 ~~~ikI~lvG~~nvGKStLin~l~ 26 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALT 26 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 887289999999998999999995
No 124
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=77.90 E-value=1.9 Score=21.29 Aligned_cols=57 Identities=12% Similarity=0.371 Sum_probs=45.9
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECHH
Q ss_conf 99999996598500014222001177899999999977986802-2788726731712
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISSM 801 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~~ 801 (806)
.++..+...+..+.+-|=+++.+-.....|+++.||++|+|--. +....|.+++.-.
T Consensus 46 ~vL~~l~~~~~~t~~~La~~l~~~~~~vs~~l~~L~~~Gli~r~~~~~D~R~~~l~LT 103 (150)
T 2rdp_A 46 VALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLL 103 (150)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEEC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEC
T ss_conf 9999999779959999999989688789999999971897798521689885786789
No 125
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=77.74 E-value=2.6 Score=20.29 Aligned_cols=110 Identities=23% Similarity=0.314 Sum_probs=60.5
Q ss_pred CCCEEEEEHHH--HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEE----CCCCCCCCCHHHHHCCCCEEEEEECCCCC
Q ss_conf 69868776344--6888873210058899999986641423799996----57775355435541102515876458664
Q gi|254780799|r 588 HMPYIVVVIDE--MADLMMVARKDIESAVQRLAQMARASGIHVIMAT----QRPSVDVITGTIKANFPTRISFQVSSKID 661 (806)
Q Consensus 588 ~lp~ivviiDE--laDlmm~~~~~ve~~i~rlaq~ara~GiHli~aT----qrPsvdvitg~ikan~p~riaf~v~s~~d 661 (806)
.|.-|.||.=- +.| |-|..+.+.=+..+-|| |+...+|+ |-+.+|-.||-... +
T Consensus 5 ~MKKvaviLsg~g~~D-----G~E~~E~~~p~~~L~ra-G~~V~~~sp~~~~~~~~~h~~~~~~~--------------~ 64 (232)
T 1vhq_A 5 TMKKIGVILSGCGVYD-----GSEIHEAVLTLLAISRS-GAQAVCFAPDKQQVDVINHLTGEAMT--------------E 64 (232)
T ss_dssp -CCEEEEECCSBSTTT-----SBCHHHHHHHHHHHHHT-TCEEEEEECSSBCSCCBCTTTCCBCS--------------C
T ss_pred CCCEEEEEECCCCCCC-----CHHHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCCCCCC--------------C
T ss_conf 6675999966887877-----50298999999999988-99799995799855312256786013--------------4
Q ss_pred CHHHCCCC----------CHHHHCCCCCEEEECCCC-CEEEEE-----ECCC-CHHHHHHHHHHHHHCCCCCC
Q ss_conf 21233886----------457865887547736898-325888-----3348-98899999999971289742
Q gi|254780799|r 662 SRTILGEQ----------GAEQLLGQGDMLYMTGGG-RVQRIH-----GPFV-SDIEVEKVVSHLKTQGEAKY 717 (806)
Q Consensus 662 Srtild~~----------gae~Llg~gdml~~~~~~-~~~r~~-----g~~v-~~~ev~~v~~~~~~q~~~~y 717 (806)
+|.++.+. =+|--.-.=|+|++|||- ....+. |... -+++|.+++...-++++|--
T Consensus 65 ~~~~~~~~~~i~~~~~~~l~~v~~~dyD~lviPGG~g~~~~L~~~~~~~~~~~~~~~v~~~i~~~~~~~K~ia 137 (232)
T 1vhq_A 65 TRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLG 137 (232)
T ss_dssp CCBHHHHHTTTTTTCCEEGGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEECCEEECCCCCHHHCCHHHCCEEEECCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 2333520021530156766688941288899789954288865400246433339999999999998699799
No 126
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=77.73 E-value=0.57 Score=25.30 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=22.7
Q ss_pred CEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 86877634468888732100588999999866414237999965777
Q gi|254780799|r 590 PYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 590 p~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
-|=+|||||.- .+.. +--.....+.++++--..++|+.|-.|.
T Consensus 93 ~~~~IIiDEaH-~~~~---~~~~~~~~l~~~~~~~~~~~i~mSAT~p 135 (431)
T 2v6i_A 93 NYNLYIMDEAH-FLDP---ASVAARGYIETRVSMGDAGAIFMTATPP 135 (431)
T ss_dssp CCSEEEEESTT-CCSH---HHHHHHHHHHHHHHTTSCEEEEEESSCT
T ss_pred CCCEEEEEECC-CCCH---HHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 60589995020-3664---1688866899864266775899965887
No 127
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=77.65 E-value=1.3 Score=22.48 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=17.8
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 23553047740679999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI 475 (806)
..++.|-+|+|||--+|+++
T Consensus 6 kI~ivG~~nvGKSSLin~l~ 25 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999989999999999996
No 128
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=77.25 E-value=1 Score=23.33 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=12.2
Q ss_pred EEEEECCCCHHHHHH
Q ss_conf 355304774067999
Q gi|254780799|r 457 LLIAGTTGSGKSVAI 471 (806)
Q Consensus 457 LLIAGtTGSGKSV~i 471 (806)
+||...|||||+.|-
T Consensus 61 vlv~apTGsGKTl~~ 75 (394)
T 1fuu_A 61 VLAQAQSGTGKTGTF 75 (394)
T ss_dssp EEECCCSSHHHHHHH
T ss_pred EEEECCCCCHHHHHH
T ss_conf 899899984289999
No 129
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=76.65 E-value=1.3 Score=22.56 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=20.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 2355304774067999999999998
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLY 480 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLy 480 (806)
|++|=|..|||||-.+|. |+.+|.
T Consensus 3 hi~I~G~~GsGKTTL~~~-l~~~l~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHK-ASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHC
T ss_conf 999989998229999999-986616
No 130
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, hydrolase; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=76.59 E-value=2.5 Score=20.43 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=29.0
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCH
Q ss_conf 2023553047740679999999999982995784788852310
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKM 496 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~ 496 (806)
-|=.+|.|..|||||--+|.++-.+ +.. ..+-.|-.||--
T Consensus 14 ~~vi~v~G~~GaGKTTLl~~Ll~~~--~~~-~~~~iVn~D~~~ 53 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYL--EDN-YKVAYVNLDTGV 53 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH--TTT-SCEEEEECCSSC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHH--HHC-CEEEEEECCCCC
T ss_conf 8889999189980999999999987--308-748999657775
No 131
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=76.42 E-value=3.5 Score=19.38 Aligned_cols=57 Identities=9% Similarity=0.250 Sum_probs=45.5
Q ss_pred HHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCCEEEECHHH
Q ss_conf 99999999659850001422200117789999999997798680227887267317125
Q gi|254780799|r 744 KQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGKREILISSME 802 (806)
Q Consensus 744 ~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g~~~r~vl~~~~~ 802 (806)
-+.+..+.+.+..|++-|-+++.+--....|+++.||++|+|-- +| +.|.|-.++..
T Consensus 155 ~~iL~~L~~~~~~s~~ela~~l~~s~~tv~r~l~~Le~~GlV~r-~~-r~~~v~LT~~G 211 (244)
T 2wte_A 155 MKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKFGILTQ-KG-KDRKVELNELG 211 (244)
T ss_dssp HHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ET-TTTEEEECHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE-EC-CCCEEEECHHH
T ss_conf 99999999779989999999979798899999999998899998-37-82279987879
No 132
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=76.21 E-value=2 Score=21.27 Aligned_cols=105 Identities=25% Similarity=0.316 Sum_probs=54.6
Q ss_pred CCCCHHHCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHH--EEEEEECCCHHHHHHCCCCHHH
Q ss_conf 21000210456666667854100202355304774067999999999998299578--4788852310011102770343
Q gi|254780799|r 431 QCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQ--CRLIMIDPKMLELSVYDGIPNL 508 (806)
Q Consensus 431 ~~~L~iaLGKdI~G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~e--vkliliDPK~vEls~Y~~iPHL 508 (806)
.....-.||+.-...|++. -|||..|||||-.-+.+ ..+++..|.. |-+|=.|= |
T Consensus 65 ~~~~~~fl~~~~~k~P~II--------GIaG~sgsGKSTla~~L--~~lL~~~~~~~~v~lis~D~-------F------ 121 (308)
T 1sq5_A 65 QAVLEQFLGTNGQRIPYII--------SIAGSVAVGKSTTARVL--QALLSRWPEHRRVELITTDG-------F------ 121 (308)
T ss_dssp HHHHHHHHTCC-CCCCEEE--------EEEECTTSSHHHHHHHH--HHHHTTSTTCCCEEEEEGGG-------G------
T ss_pred HHHHHHHHCCCCCCCCEEE--------EEECCCCCCHHHHHHHH--HHHHHHHCCCCCEEEEECCC-------C------
T ss_conf 9999998468899996899--------99899988799999999--99971016999659985351-------5------
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 122334304566899999999999999998708---996899999999887447866775446776545432
Q gi|254780799|r 509 LTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIG---VRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEA 577 (806)
Q Consensus 509 l~pVvTd~~kA~~aL~w~V~EMe~RY~l~a~~~---vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (806)
+.| ++ +.++| .++...| .=|++.+.+-+...+..++.+..|+ ||..+.+.
T Consensus 122 ~~~------~~---------~l~~~-~l~~~~g~Pes~D~~~l~~~L~~lk~g~~~v~~P~---yd~~~~d~ 174 (308)
T 1sq5_A 122 LHP------NQ---------VLKER-GLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPV---YSHLIYDV 174 (308)
T ss_dssp BCC------HH---------HHHHH-TCTTCTTSGGGBCHHHHHHHHHHHTTTCSCEEECC---EETTTTEE
T ss_pred CCC------HH---------HHHHC-CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCC---CCCCCCCC
T ss_conf 288------06---------88871-67666897355149999999999982997343563---10654556
No 133
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=76.10 E-value=2.1 Score=21.06 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=22.9
Q ss_pred HHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99999965985000142220011778999999999779868
Q gi|254780799|r 746 AVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIG 786 (806)
Q Consensus 746 a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~ 786 (806)
++..+...+..|.+-|-+++.+--....|+++.||++|+|-
T Consensus 46 vL~~L~~~~~~t~~~La~~l~~~~~tvs~~v~~L~~~glV~ 86 (154)
T 2qww_A 46 MINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVV 86 (154)
T ss_dssp HHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 99999977998999999997978757999999999789979
No 134
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Pyrococcus horikoshii OT3}
Probab=75.79 E-value=2 Score=21.20 Aligned_cols=26 Identities=12% Similarity=-0.014 Sum_probs=22.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 35530477406799999999999829
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRM 482 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~ 482 (806)
+|++|.+|||||+....++...+-+-
T Consensus 24 ~ll~g~~gsgkt~l~~~f~~~~~~~g 49 (260)
T 3bs4_A 24 LIHEEDASSRGKDILFYILSRKLKSD 49 (260)
T ss_dssp EEEECSGGGCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 99993899998999999999998779
No 135
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=75.75 E-value=1.6 Score=21.86 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.0
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 00202355304774067999999999
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~S 477 (806)
..+|..-+.|-|.+|||--+|++.=+
T Consensus 177 ~~~~~ValvG~~NaGKSSLlNaLtg~ 202 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 69977999745562041886420200
No 136
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=75.56 E-value=3.7 Score=19.22 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=28.4
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH
Q ss_conf 0235530477406799999999999829957847888523100
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML 497 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v 497 (806)
-++|+.|..|+|||-...++.--+ .+.++-|++..+
T Consensus 46 ~giLL~GppGtGKT~la~aia~e~-------~~~~~~v~~~~l 81 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA-------KVPFFTISGSDF 81 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH-------TCCEEEECSCSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC-------CCCEEEEEHHHH
T ss_conf 746756899988779999999871-------997699985783
No 137
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=75.30 E-value=3.3 Score=19.52 Aligned_cols=48 Identities=25% Similarity=0.239 Sum_probs=29.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCH-------HHEEEEEECCCHHHHHHCCC
Q ss_conf 23553047740679999999999982995-------78478885231001110277
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTP-------AQCRLIMIDPKMLELSVYDG 504 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P-------~evkliliDPK~vEls~Y~~ 504 (806)
+-||.-+||||||...=.++.-+ ++... ..--++++|-+-+.-..++.
T Consensus 200 r~li~~aTGSGKT~~a~~li~~l-l~~~~~~~~~~~~~rvl~l~dr~~L~~Q~~~~ 254 (590)
T 3h1t_A 200 RSLITMATGTGKTVVAFQISWKL-WSARWNRTGDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH-HHTTCCSSCSSSCCCEEEEEC-----------
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-HHHCCCCCCCCCCCEEEEEECHHHHHHHHHHH
T ss_conf 65998899997899999999999-98411322345688699995369999989999
No 138
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=75.29 E-value=1.8 Score=21.58 Aligned_cols=39 Identities=26% Similarity=0.270 Sum_probs=26.3
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECC
Q ss_conf 020235530477406799999999999829957847888523
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDP 494 (806)
.+|=.-|+|.+|||||--+|.++-... ....+-.+--||
T Consensus 37 ~~~~V~ivG~pnaGKSTLln~L~~~~~---~~~~v~~v~~d~ 75 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK---DKYKIACIAGDV 75 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT---TTCCEEEEEEET
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---CCCCEEEEECCC
T ss_conf 984999988999989999999999840---366068884564
No 139
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=75.28 E-value=1.7 Score=21.75 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=18.7
Q ss_pred CCE--EEEEECCCCHHHHHHHHHHH
Q ss_conf 202--35530477406799999999
Q gi|254780799|r 454 MPH--LLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 454 MPH--LLIAGtTGSGKSV~iN~iI~ 476 (806)
|.+ ++|.|..|+|||-.||.++.
T Consensus 1 m~~~Ki~vvG~~~vGKTsli~~~~~ 25 (167)
T 1c1y_A 1 MREYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 9556999999899399999999963
No 140
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=74.94 E-value=3.1 Score=19.78 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=13.0
Q ss_pred EEEEHHHHHHCCCHHHHHHHHHHH
Q ss_conf 500014222001177899999999
Q gi|254780799|r 756 ASISYIQRRLGIGYNRAASIIENM 779 (806)
Q Consensus 756 ~s~s~lqr~~~igy~raar~~~~~ 779 (806)
+|..-|.+=.++|.-.|.+|.+..
T Consensus 676 ~~~~~l~~v~g~g~k~a~~i~~~~ 699 (720)
T 2zj8_A 676 ARPEELLKIEGIGVKTVEAIFKFL 699 (720)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 998898527694899999999744
No 141
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomics consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=74.74 E-value=1.2 Score=22.93 Aligned_cols=19 Identities=26% Similarity=0.509 Sum_probs=14.9
Q ss_pred EEEEEECCCCHHHHHHHHH
Q ss_conf 2355304774067999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~i 474 (806)
+++|..-|||||+.|----
T Consensus 59 dviv~a~TGsGKTlay~lp 77 (228)
T 3iuy_A 59 DLIVVAQTGTGKTLSYLMP 77 (228)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred CEEEECCCCCCCCCHHHHH
T ss_conf 8899878999863665532
No 142
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10
Probab=74.68 E-value=3.8 Score=19.06 Aligned_cols=105 Identities=13% Similarity=0.199 Sum_probs=59.0
Q ss_pred CCCEEEEEHHH--HHHHHHHCCCHH-HHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHH
Q ss_conf 69868776344--688887321005-889999998664142379999657775355435541102515876458664212
Q gi|254780799|r 588 HMPYIVVVIDE--MADLMMVARKDI-ESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRT 664 (806)
Q Consensus 588 ~lp~ivviiDE--laDlmm~~~~~v-e~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrt 664 (806)
.+=.|+.=+|. +.| ..+.+ +..+..|.| +++.|+|+++||=||-..+..-+-+-+++....+...
T Consensus 26 ~IKli~~DlDGTLl~~----~~~~i~~~~~~al~~-l~~~Gi~vviaTGR~~~~~~~~~~~~~l~~~~~~~~~------- 93 (301)
T 2b30_A 26 DIKLLLIDFDGTLFVD----KDIKVPSENIDAIKE-AIEKGYMVSICTGRSKVGILSAFGEENLKKMNFYGMP------- 93 (301)
T ss_dssp CCCEEEEETBTTTBCC----TTTCSCHHHHHHHHH-HHHHTCEEEEECSSCHHHHHHHHCHHHHHHHTCCSCS-------
T ss_pred CCEEEEEECCCCCCCC----CCCCCCHHHHHHHHH-HHHCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCE-------
T ss_conf 8259999787998799----898039999999999-9978998999948998999999998387634566650-------
Q ss_pred HCCCCCHHHHCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
Q ss_conf 338864578658875477368983258883348988999999999712897
Q gi|254780799|r 665 ILGEQGAEQLLGQGDMLYMTGGGRVQRIHGPFVSDIEVEKVVSHLKTQGEA 715 (806)
Q Consensus 665 ild~~gae~Llg~gdml~~~~~~~~~r~~g~~v~~~ev~~v~~~~~~q~~~ 715 (806)
+. .-+|=++|-+.+.. +.-.+++.+++.++++++.....+
T Consensus 94 ~i--------~~NGa~iy~~~~~~---i~~~~l~~~~~~~i~~~~~~~~~~ 133 (301)
T 2b30_A 94 GV--------YINGTIVYDQIGYT---LLDETIETDVYAELISYLVEKNLV 133 (301)
T ss_dssp EE--------EGGGTEEECTTCCE---EEECCCCHHHHHHHHHHHHHTTCG
T ss_pred EE--------EECCEEEECCCCCE---EEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 89--------97897998489878---866236979999999999872875
No 143
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=74.33 E-value=2.1 Score=21.08 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.1
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 02023553047740679999999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~Sl 478 (806)
+.+|+||-|..|+|||..++.+.-.+
T Consensus 43 ~~~~lli~GppGtGKT~l~~~l~~~l 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99836998799880999999999997
No 144
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=74.27 E-value=2.7 Score=20.16 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=38.1
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEEC
Q ss_conf 99999996598500014222001177899999999977986802-27887267317
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILIS 799 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~ 799 (806)
.++..+.+.+..+++-|-+++.+-.+-..|+++.||++|+|--. +..-.|.+++.
T Consensus 41 ~vL~~l~~~~~~t~~ela~~~~~~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~ 96 (155)
T 1s3j_A 41 FVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLS 96 (155)
T ss_dssp HHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHC
T ss_conf 99999998699799999999896998999999999862425520233677520002
No 145
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, acetylation, ATP-binding, cytoplasm, lipid-binding, nucleotide-binding; HET: ADP; 3.00A {Mus musculus}
Probab=74.25 E-value=3.9 Score=18.99 Aligned_cols=169 Identities=17% Similarity=0.276 Sum_probs=84.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23553047740679999999999982995784788852310011102770343122334304566899999999999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQ 535 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY~ 535 (806)
++|+-|.-|+|||..+.++--.+ .+.++-|++..+ .. .|
T Consensus 51 gvLl~GppGtGKT~la~aia~~~-------~~~~~~i~~s~l-----------~~----------------------~~- 89 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANEC-------QANFISIKGPEL-----------LT----------------------MW- 89 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT-------TCEEEEECHHHH-----------HH----------------------HH-
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-------CCCEEEEEHHHH-----------CC----------------------CC-
T ss_conf 37887999998899999999994-------997699887995-----------13----------------------44-
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCC-------
Q ss_conf 9987089968999999998874478667754467765454322233223234698687763446888873210-------
Q gi|254780799|r 536 KMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARK------- 608 (806)
Q Consensus 536 l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~------- 608 (806)
......++... +.+|+.. -|. |++|||+--|+..-+.
T Consensus 90 --~~~~~~~~~~~---f~~a~~~------------------------------~p~-il~iDeid~l~~~r~~~~~~~~~ 133 (301)
T 3cf0_A 90 --FGESEANVREI---FDKARQA------------------------------APC-VLFFDELDSIAKARGGNIGDGGG 133 (301)
T ss_dssp --HTTCTTHHHHH---HHHHHHT------------------------------CSE-EEEECSTTHHHHHHTTTTCCSSC
T ss_pred --CCCHHHHHHHH---HHHHHHC------------------------------CCC-EEEEECCCCCCCCCCCCCCCCCH
T ss_conf --65068999999---9999973------------------------------994-79740355443456877889737
Q ss_pred ----HHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHH-CCCCEEEEEECCCCCCHHHCCCCCHHHHCCCCCEEEE
Q ss_conf ----05889999998664142379999657775355435541-1025158764586642123388645786588754773
Q gi|254780799|r 609 ----DIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKA-NFPTRISFQVSSKIDSRTILGEQGAEQLLGQGDMLYM 683 (806)
Q Consensus 609 ----~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ika-n~p~riaf~v~s~~dSrtild~~gae~Llg~gdml~~ 683 (806)
-+-..+..+-....--++=+|.+|.+|.- +=..+++. .|.-.|-|..-+.-+-+-|| +.+|++-.. .
T Consensus 134 ~~~~~~~~ll~~ld~~~~~~~vivI~ttn~~~~-ld~al~R~~RF~~~i~~~~p~~~~R~~Il-----~~~l~~~~~--~ 205 (301)
T 3cf0_A 134 AADRVINQILTEMDGMSTKKNVFIIGATNRPDI-IDPAILRPGRLDQLIYIPLPDEKSRVAIL-----KANLRKSPV--A 205 (301)
T ss_dssp SCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG-SCGGGGSTTSSCEEEECCCCCHHHHHHHH-----HHHHTTSCB--C
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHH-CCHHHCCCCCCCEEEECCCCCHHHHHHHH-----HHHHCCCCC--C
T ss_conf 999999999999636566699899980698044-79977488877538977999999999999-----998645777--6
Q ss_pred CCC--CCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 689--832588833489889999999997
Q gi|254780799|r 684 TGG--GRVQRIHGPFVSDIEVEKVVSHLK 710 (806)
Q Consensus 684 ~~~--~~~~r~~g~~v~~~ev~~v~~~~~ 710 (806)
+.- ..+.+..-.| +-.|+..+|....
T Consensus 206 ~d~~l~~la~~t~g~-s~adl~~l~~~a~ 233 (301)
T 3cf0_A 206 KDVDLEFLAKMTNGF-SGADLTEICQRAC 233 (301)
T ss_dssp SSCCHHHHHHTCSSC-CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHCCCC-CHHHHHHHHHHHH
T ss_conf 544689999867999-9999999999999
No 146
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=74.20 E-value=1.7 Score=21.75 Aligned_cols=26 Identities=35% Similarity=0.538 Sum_probs=17.8
Q ss_pred CCCEEE-EEECCCCHHHHHHHHHHHHH
Q ss_conf 020235-53047740679999999999
Q gi|254780799|r 453 RMPHLL-IAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 453 kMPHLL-IAGtTGSGKSV~iN~iI~Sl 478 (806)
+=|-+. |+|.+|||||-.-+.+--.|
T Consensus 20 ~~P~IIgItG~~gSGKSTla~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 991899988989885999999999996
No 147
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=74.12 E-value=2.6 Score=20.37 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=22.7
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 023553047740679999999999982
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYR 481 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk 481 (806)
.+|++-|.+|+|||--..+|.-.++-+
T Consensus 55 ~gl~l~G~~GtGKT~La~ai~~~l~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 748998999897899999999997534
No 148
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding protein; HET: DNA; 2.40A {Archaeoglobus fulgidus dsm 4304} SCOP: c.37.1.19
Probab=74.05 E-value=3.1 Score=19.76 Aligned_cols=16 Identities=38% Similarity=0.306 Sum_probs=12.2
Q ss_pred CEEEEEECCCCHHHHH
Q ss_conf 0235530477406799
Q gi|254780799|r 455 PHLLIAGTTGSGKSVA 470 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~ 470 (806)
..-+|+..|||||++.
T Consensus 109 ~~gll~~pTGsGKT~i 124 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHV 124 (237)
T ss_dssp SEEEEEESSSTTHHHH
T ss_pred CCCEEEECCCCCHHHH
T ss_conf 9969993899988899
No 149
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=74.03 E-value=2.3 Score=20.70 Aligned_cols=28 Identities=29% Similarity=0.485 Sum_probs=19.9
Q ss_pred CCE-EEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 202-3553047740679999999999982
Q gi|254780799|r 454 MPH-LLIAGTTGSGKSVAINTMILSLLYR 481 (806)
Q Consensus 454 MPH-LLIAGtTGSGKSV~iN~iI~SlLyk 481 (806)
.|= +-|||..|||||---+.+..-|+-+
T Consensus 30 ~P~iIgiaG~~GSGKSTla~~l~~~l~~~ 58 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 99899967898788999999999999975
No 150
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding protein; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=73.89 E-value=3.6 Score=19.29 Aligned_cols=45 Identities=13% Similarity=0.224 Sum_probs=31.7
Q ss_pred HHHHHHHHCCCEEEEHHHHHH----CCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 999999965985000142220----011778999999999779868022
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRL----GIGYNRAASIIENMEEKGVIGPAS 789 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~----~igy~raar~~~~~e~~giv~~~~ 789 (806)
+..+++.+.+.+|.+-++..| .+-|+.-..+++.||++|+|.-..
T Consensus 14 ~VM~~lW~~~~~t~~ei~~~l~~~~~~~~~Tv~t~L~RL~~Kg~l~r~~ 62 (126)
T 1sd4_A 14 DVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999998689977999999853346885606999999999789878873
No 151
>3dnp_A Stress response protein YHAX; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.85A {Bacillus subtilis}
Probab=73.83 E-value=4 Score=18.92 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=44.5
Q ss_pred HHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHCCCCCHHHHCCCCCEEEECCCCCEEEEEEC
Q ss_conf 99986641423799996577753554355411025158764586642123388645786588754773689832588833
Q gi|254780799|r 616 RLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQGAEQLLGQGDMLYMTGGGRVQRIHGP 695 (806)
Q Consensus 616 rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtild~~gae~Llg~gdml~~~~~~~~~r~~g~ 695 (806)
+.-+.+|+.|||+++||-|+-..+.-=+-+.+++.- ++-. +|-++|-+.+.. ++..
T Consensus 30 ~al~~l~~~Gi~v~~~TGR~~~~~~~~~~~l~~~~~-------------~i~~--------nGa~i~~~~~~~---~~~~ 85 (290)
T 3dnp_A 30 DAIEYVKKKGIYVTLVTNRHFRSAQKIAKSLKLDAK-------------LITH--------SGAYIAEKIDAP---FFEK 85 (290)
T ss_dssp HHHHHHHHTTCEEEEBCSSCHHHHHHHHHHTTCCSC-------------EEEG--------GGTEEESSTTSC---SEEC
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCC-------------EEEC--------CCCEEEECCCCE---EECC
T ss_conf 999999978998999889988999999998399860-------------8955--------983698557423---2110
Q ss_pred CCCHHHHHHHHHHHHHCCC
Q ss_conf 4898899999999971289
Q gi|254780799|r 696 FVSDIEVEKVVSHLKTQGE 714 (806)
Q Consensus 696 ~v~~~ev~~v~~~~~~q~~ 714 (806)
.++.+.+..+++++..++.
T Consensus 86 ~l~~~~~~~i~~~~~~~~~ 104 (290)
T 3dnp_A 86 RISDDHTFNIVQVLESYQC 104 (290)
T ss_dssp CCCHHHHHHHHHHHHTSSC
T ss_pred CCCHHHHHHHHHHHHHCCC
T ss_conf 4788999999999997298
No 152
>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=73.81 E-value=3.6 Score=19.25 Aligned_cols=57 Identities=11% Similarity=0.165 Sum_probs=40.3
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECHH
Q ss_conf 99999996598500014222001177899999999977986802-2788726731712
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISSM 801 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~~ 801 (806)
.++.++...+-.+.|-|.+++.+--.-..|+++.||++|+|--. ++...|.+.+.-.
T Consensus 56 ~iL~~l~~~~~~t~~~La~~~~~~~~~vsr~v~~L~~~glI~r~~~~~D~R~~~l~lT 113 (162)
T 3cjn_A 56 RALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLT 113 (162)
T ss_dssp HHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEEC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEC
T ss_conf 9999998479989999999989798899999999986896688522688886676789
No 153
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural genomics consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=73.59 E-value=1.9 Score=21.32 Aligned_cols=31 Identities=39% Similarity=0.555 Sum_probs=18.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHE
Q ss_conf 3553047740679999999999982995784
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQC 487 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~ev 487 (806)
++|...|||||+.|---=++.-|++..|.+.
T Consensus 55 vii~apTGsGKTlay~lpil~~l~~~~~~~~ 85 (417)
T 2i4i_A 55 LMACAQTGSGKTAAFLLPILSQIYSDGPGEA 85 (417)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHHCCCHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 8998789957999999999999753166224
No 154
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=73.39 E-value=0.96 Score=23.59 Aligned_cols=240 Identities=20% Similarity=0.195 Sum_probs=120.3
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
Q ss_conf 25665457899999974248632899841044244444321478639999978899998863001210003886125553
Q gi|254780799|r 328 SPKVMQNNACTLKSVLSDFGIQGEIVNVRPGPVITLYELEPAPGIKSSRIIGLSDDIARSMSAISARVAVIPRRNAIGIE 407 (806)
Q Consensus 328 s~eeL~~nA~lLE~tL~dFGVe~~Vv~v~pGPVVTrYEi~PApGVKvSKI~nLadDIA~aLsa~svRIapIPGK~~VGIE 407 (806)
+.++.++.-+.+.+.-+++|...-|--=.+||-+-.-+++...-++ |...+ +|---..++..|
T Consensus 39 t~e~~~~~i~~ir~~~~~~~~~v~I~~Dl~GpkiRtg~~~~~~~i~--------------l~~G~-~v~l~~~~~~~~-- 101 (470)
T 1e0t_A 39 DYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVS--------------LKAGQ-TFTFTTDKSVIG-- 101 (470)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCEEEEECCCCCEEBCCBGGGCCEE--------------ECTTC-EEEEESCTTCCB--
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEECCCCEEE--------------ECCCC-EEEEECCCCCCC--
T ss_conf 9999999999999999970998179996899864798736997589--------------63899-999956887689--
Q ss_pred ECCCCCCEEEEHHHCCCHHHHHCCCCCHHHCCCCCCCCEEEEECCCCCEE-----EEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 02456623873423072134302210002104566666678541002023-----5530477406799999999999829
Q gi|254780799|r 408 LPNDIRETVMLRDLIVSRVFEKNQCDLAINLGKSIEGKPIIADLARMPHL-----LIAGTTGSGKSVAINTMILSLLYRM 482 (806)
Q Consensus 408 iPN~~r~~V~lreil~s~~f~~s~~~L~iaLGKdI~G~pvv~DLakMPHL-----LIAGtTGSGKSV~iN~iI~SlLyk~ 482 (806)
|.++-.|...++++. -+....+-+.=| ....-=+.+-+.- +-+|.-+|+|+|-+
T Consensus 102 --~~~~i~v~~~~l~~~---v~~Gd~I~idDG-----~i~l~V~~~~~~~i~~~v~~~G~l~~~Kgvni----------- 160 (470)
T 1e0t_A 102 --NSEMVAVTYEGFTTD---LSVGNTVLVDDG-----LIGMEVTAIEGNKVICKVLNNGDLGENKGVNL----------- 160 (470)
T ss_dssp --BTTEEEBSCTTHHHH---CCTTCEEEETTT-----TEEEEEEEEETTEEEEEECSCEEECSSCEEEC-----------
T ss_pred --CCCEEEECCHHHHHH---CCCCCEEEEECC-----EEEEEEEECCCCEEEEEEEECEEECCCCEEEC-----------
T ss_conf --777898440887975---689988999778-----69999973248889999962829628971642-----------
Q ss_pred CHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHCCCC
Q ss_conf 9578478885231001110277034312233430456689999999999999999870899689999999988-744786
Q gi|254780799|r 483 TPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQY-HNTGKK 561 (806)
Q Consensus 483 ~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY~l~a~~~vRni~~yN~k~~~~-~~~~~~ 561 (806)
| |. .+-.|..|+ |-...|+|++. .-.+..+-.-|||-+...+ +++. .+.|.+
T Consensus 161 -p-------------------~~-~~~~~~lte--kD~~~i~~~~~---~~vd~i~lSfV~~~~dv~~-~r~~l~~~~~~ 213 (470)
T 1e0t_A 161 -P-------------------GV-SIALPALAE--KDKQDLIFGCE---QGVDFVAASFIRKRSDVIE-IREHLKAHGGE 213 (470)
T ss_dssp -S-------------------SC-CCCCCSSCH--HHHHHHHHHHH---HTCSEEEESSCCSHHHHHH-HHHHHHTTTCT
T ss_pred -C-------------------CC-CCCCCCCCH--HHHHHHHHHCC---CCCCEEEECCCCCHHHHHH-HHHHHHHHCCC
T ss_conf -8-------------------97-556644638--78998861101---5976441035686678888-87667761576
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCH---------HHHHHHHHHHHHHHCCEEEEEEE
Q ss_conf 677544677654543222332232346986877634468888732100---------58899999986641423799996
Q gi|254780799|r 562 FNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKD---------IESAVQRLAQMARASGIHVIMAT 632 (806)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~~---------ve~~i~rlaq~ara~GiHli~aT 632 (806)
-. .+. +..| ....++.|.-|+ +.+|=+|+|..| |=..--++-+++|++|.-.|+||
T Consensus 214 ~~-~ii---------aKIE-~~~al~nl~eI~----~~sDgimiaRGDLg~e~~~e~vp~~Qk~Ii~~~~~~~kpvi~AT 278 (470)
T 1e0t_A 214 NI-HII---------SKIE-NQEGLNNFDEIL----EASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITAT 278 (470)
T ss_dssp TC-EEE---------EEEC-SHHHHHTHHHHH----HHSSEEEEEHHHHHHHSCHHHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred CC-EEE---------EEEC-CHHHHHHHHHHH----HHCCEEEEECCCCHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEH
T ss_conf 63-479---------8852-699998799999----75757899656601008988878999999999986599889816
Q ss_pred CCCCCCCCCHHHHHCCCCEE
Q ss_conf 57775355435541102515
Q gi|254780799|r 633 QRPSVDVITGTIKANFPTRI 652 (806)
Q Consensus 633 qrPsvdvitg~ikan~p~ri 652 (806)
| +.--+++...|||-
T Consensus 279 q-----~LeSM~~~~~PTRA 293 (470)
T 1e0t_A 279 M-----MLDSMIKNPRPTDA 293 (470)
T ss_dssp C--------------CCCHH
T ss_pred H-----HHHHHHCCCCCCCH
T ss_conf 7-----78876318998634
No 155
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymerase assembly, transferase; 1.76A {Sulfolobus solfataricus P2} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L
Probab=73.37 E-value=3.2 Score=19.67 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCC-----CCCCHH-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999982995784788852310011102770343122-----334304-566899999999999999998
Q gi|254780799|r 471 INTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTP-----VVTNPQ-KAVTVLKWLVCEMEERYQKMS 538 (806)
Q Consensus 471 iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~p-----VvTd~~-kA~~aL~w~V~EMe~RY~l~a 538 (806)
+-.++.+-|++ || .|++..| .+||-+.+ |-|+.. ++..+|++++.....-++-|.
T Consensus 24 lgnlL~~~L~~-----------~~-~V~fagY-~~pHPl~~~i~i~i~t~~~~~p~~~l~~a~~~l~~~~~~~~ 84 (92)
T 2pa8_L 24 LGNLIAGTLRR-----------IS-GVSFASY-YQPHPLSDKIIVKILTDGSITPKDALLKAIENIRGMTSHYI 84 (92)
T ss_dssp HHHHHHHHHHT-----------ST-TEEEEEE-ECSSTTSCCEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-----------CC-CCEEEEE-ECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999944-----------99-9169887-56788778159999969999989999999999999999999
No 156
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=72.95 E-value=0.89 Score=23.82 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 89999999997128
Q gi|254780799|r 700 IEVEKVVSHLKTQG 713 (806)
Q Consensus 700 ~ev~~v~~~~~~q~ 713 (806)
++++++.+.+++.+
T Consensus 201 ~~ae~la~~L~~~g 214 (459)
T 2z83_A 201 KMGNEIAMCLQRAG 214 (459)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999998689
No 157
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=72.89 E-value=3 Score=19.86 Aligned_cols=52 Identities=13% Similarity=0.226 Sum_probs=30.1
Q ss_pred EECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC-CHHH--------EEEEEECCCHHHHHHCCCC
Q ss_conf 5410020235530477406799999999999829-9578--------4788852310011102770
Q gi|254780799|r 449 ADLARMPHLLIAGTTGSGKSVAINTMILSLLYRM-TPAQ--------CRLIMIDPKMLELSVYDGI 505 (806)
Q Consensus 449 ~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~-~P~e--------vkliliDPK~vEls~Y~~i 505 (806)
.++.+==.+-|.|.+|||||-.++.|. .. .|.+ +-++.=||.....|+++.|
T Consensus 26 l~i~~Ge~vaIvG~sGsGKSTLl~ll~-----gl~~p~~G~I~i~g~i~~v~Q~~~l~~~tv~~Ni 86 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSALL-----AEMDKVEGHVAIKGSVAYVPQQAWIQNDSLRENI 86 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHT-----TCSEEEEEEEEECSCEEEECSSCCCCSEEHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHH-----CCCCCCCCEEEECCEEEEECCCCCCCCCCHHHHH
T ss_conf 998599899999999998999999996-----5677778758129909998055434665699997
No 158
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, alternative splicing, ATP-binding, hydrolase, magnesium; HET: ADP; 2.00A {Homo sapiens}
Probab=72.83 E-value=4.2 Score=18.75 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=28.4
Q ss_pred CCC-EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH
Q ss_conf 020-235530477406799999999999829957847888523100
Q gi|254780799|r 453 RMP-HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML 497 (806)
Q Consensus 453 kMP-HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v 497 (806)
+.| .+|.-|-.|+||+-...++--.+ .+.|+.++...+
T Consensus 115 ~pp~GvLL~GPPGtGKT~lakaiA~e~-------g~~~~~i~~~~l 153 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS-------GATFFSISASSL 153 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT-------TCEEEEEEGGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCC-------CCCEEEEEHHHH
T ss_conf 998458877979987999999998422-------898599406774
No 159
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=72.74 E-value=1.5 Score=22.03 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=17.1
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 2355304774067999999999998299
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMT 483 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~ 483 (806)
+++|..-||||||.| -++.+|.+..
T Consensus 60 dviv~apTGsGKTla---f~lp~l~~~~ 84 (400)
T 1s2m_A 60 DILARAKNGTGKTAA---FVIPTLEKVK 84 (400)
T ss_dssp CEEEECCTTSCHHHH---HHHHHHHHCC
T ss_pred CEEEECCCCCCHHHH---HHHHHHHHHH
T ss_conf 889989998837899---9999999644
No 160
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A*
Probab=72.73 E-value=4.3 Score=18.73 Aligned_cols=41 Identities=17% Similarity=0.337 Sum_probs=28.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH
Q ss_conf 235530477406799999999999829957847888523100
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML 497 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v 497 (806)
..++.|.||+||+-.+==|-..++.+. -..|-||=.|.-+.
T Consensus 107 vI~lvGptGvGKTTtiaKLAa~~~~~~-~~~v~lit~Dt~R~ 147 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEK-HKKIAFITTDTYRI 147 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT-CCCEEEEECCCSST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCCCH
T ss_conf 899989999888999999999999957-99069998079976
No 161
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=72.66 E-value=2.6 Score=20.32 Aligned_cols=35 Identities=31% Similarity=0.419 Sum_probs=26.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCH-HHEEEEEECCC
Q ss_conf 23553047740679999999999982995-78478885231
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTP-AQCRLIMIDPK 495 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P-~evkliliDPK 495 (806)
|+||-|-+|+||+. +...++..++ .+..|+.||-.
T Consensus 31 pvlI~GE~GtGK~~-----lA~~iH~~s~~~~~~~~~i~c~ 66 (265)
T 2bjv_A 31 PVLIIGERGTGKEL-----IASRLHYLSSRWQGPFISLNCA 66 (265)
T ss_dssp CEEEECCTTSCHHH-----HHHHHHHTSTTTTSCEEEEEGG
T ss_pred CEEEECCCCCCHHH-----HHHHHHHHCCCCCCCCCCCCHH
T ss_conf 78988989978999-----9999998464657997346677
No 162
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=72.65 E-value=3.4 Score=19.44 Aligned_cols=10 Identities=10% Similarity=0.079 Sum_probs=4.5
Q ss_pred CEEEEEECCC
Q ss_conf 1255530245
Q gi|254780799|r 402 NAIGIELPND 411 (806)
Q Consensus 402 ~~VGIEiPN~ 411 (806)
...||-++..
T Consensus 566 g~eGlNLq~a 575 (968)
T 3dmq_A 566 GSEGRNFQFA 575 (968)
T ss_dssp TTCSSCCTTC
T ss_pred CCCCCCHHHC
T ss_conf 3688786679
No 163
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, helicase, hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A*
Probab=72.58 E-value=4 Score=18.95 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=6.8
Q ss_pred EEEEECCCCHHHHH
Q ss_conf 35530477406799
Q gi|254780799|r 457 LLIAGTTGSGKSVA 470 (806)
Q Consensus 457 LLIAGtTGSGKSV~ 470 (806)
+|+..-|||||+.|
T Consensus 114 vlv~ApTGSGKTla 127 (563)
T 3i5x_A 114 VIARAKTGTGKTFA 127 (563)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
T ss_conf 89988998509999
No 164
>2kbe_A ATP-dependent RNA helicase DBP5; DBP5P, ATP-binding, cytoplasm, hydrolase, membrane, mRNA transport, nuclear pore complex; NMR {Saccharomyces cerevisiae}
Probab=72.51 E-value=1.4 Score=22.32 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=18.4
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 0235530477406799999999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLL 479 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlL 479 (806)
.++++..-|||||+.|.-.-++.-+
T Consensus 62 ~dvli~a~TGsGKTlay~lp~l~~l 86 (226)
T 2kbe_A 62 RNMIAQSQSGTGKTAAFSLTMLTRV 86 (226)
T ss_dssp CCEEEESSTTCHHHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCCCEEEECCCHHEE
T ss_conf 8889986689872002223401010
No 165
>1xtq_A GTP-binding protein RHEB; beta saddle, P-loop, signaling protein; HET: GDP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtr_A* 1xts_A*
Probab=72.49 E-value=2.3 Score=20.80 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=29.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHH---------EEEEEECCCHHHHHHCC
Q ss_conf 2355304774067999999999998299578---------47888523100111027
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQ---------CRLIMIDPKMLELSVYD 503 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~e---------vkliliDPK~vEls~Y~ 503 (806)
-++|.|..|+|||--||.++ ...-+++ .+.+.+|=+.+.|.+++
T Consensus 8 KI~viG~~~vGKSsLi~~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~d 60 (177)
T 1xtq_A 8 KIAILGYRSVGKSSLTIQFV----EGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHH----HSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH----HCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEE
T ss_conf 99999989909899999997----099888869954569999999886999999996
No 166
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A 3mex_A
Probab=72.36 E-value=2.2 Score=20.81 Aligned_cols=57 Identities=7% Similarity=0.168 Sum_probs=38.8
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECHH
Q ss_conf 99999996598500014222001177899999999977986802-2788726731712
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISSM 801 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~~ 801 (806)
.++.++.+.+..+.+-|.+++.+--....|+++.||++|+|--. +....|.+++.-.
T Consensus 41 ~iL~~l~~~~~~t~~~La~~l~i~~~~vsr~l~~L~~~g~v~r~~~~~D~R~~~l~lT 98 (142)
T 3ech_A 41 HVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLT 98 (142)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEEC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEEC
T ss_conf 9999999779989999999989698799999999998798535037888874565788
No 167
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=72.31 E-value=1.2 Score=22.83 Aligned_cols=26 Identities=38% Similarity=0.615 Sum_probs=19.3
Q ss_pred EEEEECCCC-C-EEEEEECCCCHHHHHH
Q ss_conf 678541002-0-2355304774067999
Q gi|254780799|r 446 PIIADLARM-P-HLLIAGTTGSGKSVAI 471 (806)
Q Consensus 446 pvv~DLakM-P-HLLIAGtTGSGKSV~i 471 (806)
.+..||++- | |.|+-|-|||||+++-
T Consensus 379 ~i~~d~~~~~~~~~Llqa~TGSGKTlv~ 406 (780)
T 1gm5_A 379 EIRNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred HHHHHHCCCCCCEEEEECCCCCCCHHHH
T ss_conf 9999861898752899817897460999
No 168
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural genomics consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=72.28 E-value=2.7 Score=20.17 Aligned_cols=38 Identities=29% Similarity=0.428 Sum_probs=24.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECC
Q ss_conf 235530477406799999999999829957847888523
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDP 494 (806)
+++|..-|||||+.|--.-++.-+++. +..++-+.+=|
T Consensus 82 dvlv~A~TGSGKTla~~lp~l~~~~~~-~~~~~~lil~P 119 (249)
T 3ber_A 82 DIIGLAETGSGKTGAFALPILNALLET-PQRLFALVLTP 119 (249)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHS-CCSSCEEEECS
T ss_pred CEEEECCCCCCCCEEEECCCCCCCCCC-CCCCEEEEECC
T ss_conf 989982799966138971222232446-77744999777
No 169
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A
Probab=72.07 E-value=1.6 Score=21.97 Aligned_cols=53 Identities=13% Similarity=0.292 Sum_probs=31.3
Q ss_pred HHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCC---HHHCCCCCEEEEC
Q ss_conf 99999965985000142220011778999999999779868---0227887267317
Q gi|254780799|r 746 AVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIG---PASSTGKREILIS 799 (806)
Q Consensus 746 a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~---~~~g~~~r~vl~~ 799 (806)
++.++- .+..+.|-|-+++.+.-....|+++.||++|+|- .++....|.+++.
T Consensus 43 iL~~l~-~~~~t~~~la~~l~i~~~~vs~~i~~L~~~glv~r~r~~d~~D~R~~~l~ 98 (151)
T 3kp7_A 43 VLNMLS-IEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIK 98 (151)
T ss_dssp HHHHHH-HSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBE
T ss_pred HHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHC
T ss_conf 999986-28999999999989688899999999988898301467765442244204
No 170
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=72.05 E-value=3.2 Score=19.62 Aligned_cols=164 Identities=23% Similarity=0.308 Sum_probs=81.0
Q ss_pred CEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHH-----H--------CCCCHHHHCC
Q ss_conf 66785410020235530477406799999999999829957847888523100111-----0--------2770343122
Q gi|254780799|r 445 KPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELS-----V--------YDGIPNLLTP 511 (806)
Q Consensus 445 ~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls-----~--------Y~~iPHLl~p 511 (806)
+.+-.++.+==.+-|.|..|||||..++.|. =|++ |+.= =|.+|-|-+.-. . |.+ |+ |.|
T Consensus 41 ~~vs~~i~~Gei~~iiG~sGsGKSTLl~~i~--Gl~~--p~~G-~I~~~G~~i~~~~~~~~~~r~~ig~v~Q~-~~-L~~ 113 (263)
T 2olj_A 41 KGINVHIREGEVVVVIGPSGSGKSTFLRCLN--LLED--FDEG-EIIIDGINLKAKDTNLNKVREEVGMVFQR-FN-LFP 113 (263)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHT--TSSC--CSEE-EEEETTEESSSTTCCHHHHHHHEEEECSS-CC-CCT
T ss_pred CCEEEEECCCCEEEEECCCCCCHHHHHHHHH--CCCC--CCCE-EEEECCEEECCCCHHHHHHHHHCCCCCCC-CC-CCC
T ss_conf 3516688599799998899998999977871--8967--8876-99999999417613467987422560221-23-365
Q ss_pred CCCCHHHHHHHH----HHHHHHHHHH-HHHHHHCCCCCH--------HHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 334304566899----9999999999-999987089968--------9999-9999887447866775446776545432
Q gi|254780799|r 512 VVTNPQKAVTVL----KWLVCEMEER-YQKMSKIGVRNI--------DGFN-LKVAQYHNTGKKFNRTVQTGFDRKTGEA 577 (806)
Q Consensus 512 VvTd~~kA~~aL----~w~V~EMe~R-Y~l~a~~~vRni--------~~yN-~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (806)
--|=-...+.++ .|--+|+++| .+++...|..+. .|=+ +|+.-|++-
T Consensus 114 ~ltv~eni~~~~~~~~~~~~~~~~~~~~e~l~~v~l~~~~~~~p~~LSGG~kQRv~iAraL------------------- 174 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARAL------------------- 174 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH-------------------
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH-------------------
T ss_conf 6768899999999865999999999999999873987675478001678899999999999-------------------
Q ss_pred CCCCCCCCCCCCCEEEEEHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEE
Q ss_conf 223322323469868776344-688887321005889999998664142379999657775355435541102515876
Q gi|254780799|r 578 IYETEHFDFQHMPYIVVVIDE-MADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQ 655 (806)
Q Consensus 578 ~~~~~~~~~~~lp~ivviiDE-laDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~ 655 (806)
-.=|- |++-|| .+-|=..+.+++.+.|.+|.. -|+-.|+.|..+.. =..+-.||++=
T Consensus 175 ---------~~~P~-lLllDEPts~LD~~~~~~i~~ll~~l~~----~g~Tii~vTHdl~~-------a~~~~Dri~vl 232 (263)
T 2olj_A 175 ---------AMEPK-IMLFDEPTSALDPEMVGEVLSVMKQLAN----EGMTMVVVTHEMGF-------AREVGDRVLFM 232 (263)
T ss_dssp ---------TTCCS-EEEEESTTTTSCHHHHHHHHHHHHHHHH----TTCEEEEECSCHHH-------HHHHCSEEEEE
T ss_pred ---------HHCCC-EEEECCCCCCCCHHHHHHHHHHHHHCCC----CCCEEEEECCCHHH-------HHHHCCEEEEE
T ss_conf ---------85999-5787788655899999999999985076----89879999479999-------99869999999
No 171
>2rex_B RHO-related GTP-binding protein RHO6; complex, structural genomics consortium, SGC, GTPase, GNP, plexin, effector domain, alternative splicing; HET: GNP; 2.30A {Homo sapiens} PDB: 2cls_A*
Probab=72.03 E-value=1.7 Score=21.68 Aligned_cols=44 Identities=23% Similarity=0.427 Sum_probs=27.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHH---------EEEEEECCCHHHHHHCC
Q ss_conf 2355304774067999999999998299578---------47888523100111027
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQ---------CRLIMIDPKMLELSVYD 503 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~e---------vkliliDPK~vEls~Y~ 503 (806)
-++|-|..|+|||-.++. +++..-|++ .+.+.+|=+++.|.+++
T Consensus 12 Ki~vvG~~~vGKTsli~~----~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~l~i~D 64 (197)
T 2rex_B 12 KLVLVGDVQCGKTAMLQV----LAKDCYPETYVPTVFENYTACLETEEQRVELSLWD 64 (197)
T ss_dssp EEEEECSTTSSHHHHHHH----HHHSCCCCSCCCCSEEEEEEEEC---CCEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHH----HHHCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEE
T ss_conf 999999999588999999----97299998759835688778751489468988787
No 172
>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=71.95 E-value=3.6 Score=19.27 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=44.8
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECHH
Q ss_conf 99999996598500014222001177899999999977986802-2788726731712
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISSM 801 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~~ 801 (806)
.++..+...+..+.|-|-+++.+--..+.|+++.||++|+|--. +....|.+.+.-.
T Consensus 48 ~vL~~l~~~~~~t~~eLa~~l~i~~~tvs~~i~~L~~~g~v~r~~~~~DrR~~~l~lT 105 (154)
T 2eth_A 48 YAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLT 105 (154)
T ss_dssp HHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEEC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCC
T ss_conf 9999999869949999999989798899999999998889021035555640120058
No 173
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=71.95 E-value=4.4 Score=18.61 Aligned_cols=13 Identities=15% Similarity=0.100 Sum_probs=6.6
Q ss_pred HHHHHHHCCCCEE
Q ss_conf 9999742486328
Q gi|254780799|r 339 LKSVLSDFGIQGE 351 (806)
Q Consensus 339 LE~tL~dFGVe~~ 351 (806)
+++.|...||...
T Consensus 358 ~~~~L~~~~Ip~~ 370 (673)
T 1uaa_A 358 FEKFLMQNRIPYK 370 (673)
T ss_dssp HHHHHHHTTCCEE
T ss_pred HHHHHHHCCCCEE
T ss_conf 9999997799889
No 174
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=71.95 E-value=3.4 Score=19.49 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=23.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHH
Q ss_conf 235530477406799999999999829957
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPA 485 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~ 485 (806)
++++..-|||||..|---=++.-+.+.+..
T Consensus 62 dvi~~A~TGsGKTlayllP~l~~i~~~~~~ 91 (253)
T 1wrb_A 62 DIMACAQTGSGKTAAFLIPIINHLVCQDLN 91 (253)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHTTCC-
T ss_pred CEEEECCCCCCCEEEEHHHHHHHHHHCCCC
T ss_conf 889982599997316617999998731211
No 175
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa}
Probab=71.90 E-value=2.3 Score=20.78 Aligned_cols=58 Identities=14% Similarity=0.243 Sum_probs=45.3
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECHHH
Q ss_conf 9999999659850001422200117789999999997798680227-887267317125
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISSME 802 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~~~ 802 (806)
..+..+...+-.+.|-|.+++.+-=.-..|+++.||++|+|--..+ .-.|.+++...+
T Consensus 42 ~vL~~l~~~~~~t~~eLa~~~~~~~~~vs~~i~~L~~~glv~r~~~~~D~R~~~l~lT~ 100 (140)
T 2nnn_A 42 AALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSP 100 (140)
T ss_dssp HHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECH
T ss_conf 99999998799099999998785735299999999738966972279998867888898
No 176
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=71.88 E-value=2.8 Score=20.06 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=10.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHC
Q ss_conf 632566545789999997424
Q gi|254780799|r 326 TFSPKVMQNNACTLKSVLSDF 346 (806)
Q Consensus 326 ~~s~eeL~~nA~lLE~tL~dF 346 (806)
..++++.++-.+.|.+.++.+
T Consensus 120 ~l~~ee~~~l~~~L~~i~~~l 140 (142)
T 2bv6_A 120 SLSQDEVKELNRLLGKVIHAF 140 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHC
T ss_conf 969999999999999999870
No 177
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=71.70 E-value=4.4 Score=18.60 Aligned_cols=121 Identities=22% Similarity=0.234 Sum_probs=65.2
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43122334304566899999999999999998708996899999999887447866775446776545432223322323
Q gi|254780799|r 507 NLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDF 586 (806)
Q Consensus 507 HLl~pVvTd~~kA~~aL~w~V~EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (806)
.+-.|..|+-++.. +|+|++ +..-+..+-.-||+-+.-.+--.-.+..|.. -.+. +..| ....+
T Consensus 199 ~~~~~~ltekD~~~-~i~~a~---~~~vd~ialSFv~s~~dv~~~r~~l~~~~~~--~~ii---------aKIE-~~~a~ 262 (511)
T 3gg8_A 199 KVQLPVIGEKDKHD-ILNFGI---PMGCNFIAASFVQSADDVRYIRGLLGPRGRH--IRII---------PKIE-NVEGL 262 (511)
T ss_dssp CCCSCSSCHHHHHH-HHHTTT---TTTCCEEEETTCCSHHHHHHHHHHHTGGGTT--CEEE---------EEEC-SHHHH
T ss_pred CCCCCCCCCCCHHH-HHHHHH---HCCCCEEEECCCCCHHHHHHHHHHHHHCCCE--EEEE---------EEEC-CHHHH
T ss_conf 23566655563789-999998---7199999976878478889999999857980--6899---------9533-48777
Q ss_pred CCCCEEEEEHHHHHHHHHHCCCH---------HHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEE
Q ss_conf 46986877634468888732100---------5889999998664142379999657775355435541102515
Q gi|254780799|r 587 QHMPYIVVVIDEMADLMMVARKD---------IESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRI 652 (806)
Q Consensus 587 ~~lp~ivviiDElaDlmm~~~~~---------ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~ri 652 (806)
+.|.-|+ +-+|-+|+|..| |=..-.++-+++|++|.-.|+||| +.--+|+...|||-
T Consensus 263 ~nl~eI~----~~sDgimIaRGDLg~ei~~e~vp~~Qk~Ii~~~~~~~kpvivATq-----mLeSM~~~~~PTRA 328 (511)
T 3gg8_A 263 VNFDEIL----AEADGIMIARGDLGMEIPPEKVFLAQKMMIAKCNVVGKPVITATQ-----MLESMIKNPRPTRA 328 (511)
T ss_dssp HTHHHHH----HHCSCEEEEHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCEEEESS-----SSGGGGTCSSCCHH
T ss_pred HHHHHHH----HHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECHH-----HHHHHHHCCCCCCH
T ss_conf 6379898----738789997676314389889589999999999980992998207-----79999748977406
No 178
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=71.53 E-value=2 Score=21.24 Aligned_cols=24 Identities=38% Similarity=0.750 Sum_probs=20.0
Q ss_pred CCCCEEE---EEECCCCHHHHHHHHHH
Q ss_conf 0020235---53047740679999999
Q gi|254780799|r 452 ARMPHLL---IAGTTGSGKSVAINTMI 475 (806)
Q Consensus 452 akMPHLL---IAGtTGSGKSV~iN~iI 475 (806)
.+||++| |-|--|+|||-.++.+-
T Consensus 44 ~~~p~ilRI~IEG~iGsGKTTl~k~La 70 (376)
T 1of1_A 44 QKMPTLLRVYIDGPHGMGKTTTTQLLV 70 (376)
T ss_dssp --CCEEEEEEECSSTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 567762699998987678999999999
No 179
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=71.17 E-value=4.4 Score=18.64 Aligned_cols=56 Identities=18% Similarity=0.337 Sum_probs=42.5
Q ss_pred CCCHHHHHHCCCCHHHHCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 2310011102770343122-----3343045668999999999999999987089968999999998874
Q gi|254780799|r 493 DPKMLELSVYDGIPNLLTP-----VVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHN 557 (806)
Q Consensus 493 DPK~vEls~Y~~iPHLl~p-----VvTd~~kA~~aL~w~V~EMe~RY~l~a~~~vRni~~yN~k~~~~~~ 557 (806)
||. |++.-|. +||-+.+ |-|+...+..+|+.++..+..-++-|. ..|++++.+.+.
T Consensus 45 d~~-V~fAgY~-ipHPl~~~~~lrIkt~~~~p~e~l~~a~~~l~~~~~~l~-------~~f~~~~~~~~~ 105 (115)
T 1xpp_A 45 DDQ-VDEARYY-IKHPVIDNPQIYVRVKSGKPQSAIKRAVRKLSKLYEDLG-------TQFQKEFQRYES 105 (115)
T ss_dssp CTT-EEEEEEE-CSSTTTSCCEEEEEESSSCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred CCC-CEEEEEE-CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_conf 999-1699867-799887852899996799979999999999999999999-------999999999886
No 180
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* 1e2l_A* ...
Probab=71.10 E-value=2 Score=21.12 Aligned_cols=21 Identities=43% Similarity=0.768 Sum_probs=17.5
Q ss_pred CCEEE---EEECCCCHHHHHHHHH
Q ss_conf 20235---5304774067999999
Q gi|254780799|r 454 MPHLL---IAGTTGSGKSVAINTM 474 (806)
Q Consensus 454 MPHLL---IAGtTGSGKSV~iN~i 474 (806)
||-+| |.|.-|||||.-++.+
T Consensus 1 mp~ilrI~IEG~iGsGKSTl~~~L 24 (331)
T 1e2k_A 1 MPTLLRVYIDGPHGMGKTTTTQLL 24 (331)
T ss_dssp CCEEEEEEECSCTTSSHHHHHHHH
T ss_pred CCCEEEEEEECCCCCCHHHHHHHH
T ss_conf 996039999898668899999999
No 181
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A
Probab=70.62 E-value=2.2 Score=20.94 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=16.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHH
Q ss_conf 2355304774067999999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~S 477 (806)
++++...|||||+.|.---++.
T Consensus 40 dvi~~a~TGsGKTlay~lp~l~ 61 (207)
T 2gxq_A 40 DLIGQARTGTGKTLAFALPIAE 61 (207)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCEEECCHHH
T ss_conf 8899888999974343050776
No 182
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=70.61 E-value=2.5 Score=20.47 Aligned_cols=26 Identities=35% Similarity=0.715 Sum_probs=21.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 55304774067999999999998299
Q gi|254780799|r 458 LIAGTTGSGKSVAINTMILSLLYRMT 483 (806)
Q Consensus 458 LIAGtTGSGKSV~iN~iI~SlLyk~~ 483 (806)
+|-|.+|+|||..+.+|-..|-.+.+
T Consensus 27 vi~G~Ng~GKStil~Ai~~~l~~~~~ 52 (149)
T 1f2t_A 27 LIIGQNGSGKSSLLDAILVGLYWPLR 52 (149)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHCSSC
T ss_pred EEECCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 99999999743799999998607766
No 183
>1l2t_A Hypothetical ABC transporter ATP-binding protein MJ0796; ABC transporters, ATPase, walker-A, NBD, transport protein; HET: ATP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1f3o_A*
Probab=70.59 E-value=3.6 Score=19.24 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=24.1
Q ss_pred EEEECCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 78541002023553047740679999999999
Q gi|254780799|r 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 447 vv~DLakMPHLLIAGtTGSGKSV~iN~iI~Sl 478 (806)
+-.++.+==.+-|-|..|||||..+| ||.-|
T Consensus 24 vsl~i~~Ge~~~ivG~SGsGKSTLl~-~i~gl 54 (235)
T 1l2t_A 24 VNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCL 54 (235)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHH-HHTTS
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHH-HHHHC
T ss_conf 37788599899998899998999999-99807
No 184
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=70.54 E-value=1.2 Score=22.91 Aligned_cols=29 Identities=28% Similarity=0.473 Sum_probs=21.2
Q ss_pred EECCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 541002023553047740679999999999
Q gi|254780799|r 449 ADLARMPHLLIAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 449 ~DLakMPHLLIAGtTGSGKSV~iN~iI~Sl 478 (806)
.|+.+ +.-+|.|.+|||||-.+++|-.-|
T Consensus 23 ~~f~~-~~tvi~G~NGsGKStil~Ai~~~L 51 (227)
T 1qhl_A 23 FDLDE-LVTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp ECHHH-HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EECCC-CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599-828998899998799999999996
No 185
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=70.45 E-value=3.8 Score=19.13 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=17.0
Q ss_pred EEEEEECCCCHHHHHHHH-HHHHHHH
Q ss_conf 235530477406799999-9999998
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINT-MILSLLY 480 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~-iI~SlLy 480 (806)
++++...|||||+.|-=- +|..|+.
T Consensus 95 dvi~~a~TGsGKTlafllP~l~~l~~ 120 (434)
T 2db3_A 95 DLMACAQTGSGKTAAFLLPILSKLLE 120 (434)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 88998899997899999999998642
No 186
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=70.39 E-value=1.6 Score=21.93 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=17.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 2355304774067999999999998299
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMT 483 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~ 483 (806)
+++|..-|||||+.|. ++.++.+..
T Consensus 43 dvii~a~TGsGKTlay---llp~~~~~~ 67 (219)
T 1q0u_A 43 SMVGQSQTGTGKTHAY---LLPIMEKIK 67 (219)
T ss_dssp CEEEECCSSHHHHHHH---HHHHHHHCC
T ss_pred CEEEECCCCCCCCHHH---HHHHHHHCC
T ss_conf 8899817999840577---635554022
No 187
>3lx5_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTP-binding, GTPase, transmembran nucleotide-binding; HET: AGO; 1.90A {Streptococcus thermophilus} PDB: 3lx8_A*
Probab=70.34 E-value=2.5 Score=20.42 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 02023553047740679999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI 475 (806)
.|+..-+.|.+++|||-.+|++.
T Consensus 2 ~~~~ValvG~pNvGKStL~N~L~ 24 (272)
T 3lx5_A 2 SMTEIALIGNPNSGKTSLFNLIT 24 (272)
T ss_dssp --CEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 76889999999999999999996
No 188
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=70.26 E-value=1.3 Score=22.49 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCC
Q ss_conf 689999999999999999870899-6899999999887447
Q gi|254780799|r 520 VTVLKWLVCEMEERYQKMSKIGVR-NIDGFNLKVAQYHNTG 559 (806)
Q Consensus 520 ~~aL~w~V~EMe~RY~l~a~~~vR-ni~~yN~k~~~~~~~~ 559 (806)
..-|-+--++||.||.-|+..--| -|..|++|.++|...|
T Consensus 15 ~~~~~~~~~~meKRySeMS~~EL~~EIa~L~EKaRKAEq~G 55 (128)
T 1sf9_A 15 TENLYFQSNAMEKRYSQMTPHELNTEIALLSEKARKAEQHG 55 (128)
T ss_dssp GGHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 53124422255677776699999999999999999999806
No 189
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987}
Probab=70.16 E-value=2.6 Score=20.38 Aligned_cols=57 Identities=18% Similarity=0.341 Sum_probs=40.0
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECHH
Q ss_conf 9999999659850001422200117789999999997798680227-88726731712
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISSM 801 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~~ 801 (806)
.++.++...+..+.+-|-+++.+--.-+.|+++.||++|.|-.... .-.|.+.+.-.
T Consensus 37 ~vL~~l~~~~~~t~~~La~~l~~~~~tvs~~l~~L~~~gli~r~~~~~DrR~~~l~lT 94 (139)
T 3bja_A 37 GVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLT 94 (139)
T ss_dssp HHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEEC
T ss_pred HHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEC
T ss_conf 9999999869989999984708688899999999998898798305889886787889
No 190
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=69.96 E-value=3.5 Score=19.39 Aligned_cols=166 Identities=20% Similarity=0.282 Sum_probs=76.2
Q ss_pred CCCCCCCCEEEEEC----CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHH---HHCCC---CHH
Q ss_conf 04566666678541----002023553047740679999999999982995784788852310011---10277---034
Q gi|254780799|r 438 LGKSIEGKPIIADL----ARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLEL---SVYDG---IPN 507 (806)
Q Consensus 438 LGKdI~G~pvv~DL----akMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEl---s~Y~~---iPH 507 (806)
|.|.-.|++++-|+ .+==++-+.|..|||||--+|. |+.+ ++.+--++++-=-||..+-. ..... +||
T Consensus 27 l~~~~~g~~vL~~vs~~i~~Ge~~~liGpNGaGKSTLl~~-i~Gl-~~p~sG~i~i~G~~~~~~~~~~~~~r~~ig~v~q 104 (279)
T 2ihy_A 27 IGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNI-LNAY-EPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSH 104 (279)
T ss_dssp EEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHH-HTTS-SCCSEEEEEETTBCCC---CCHHHHHTTEEEECH
T ss_pred EEEEECCEEEEECEEEEECCCCEEEEECCCCCHHHHHHHH-HHCC-CCCCCCEEEECCEECCCCCCCHHHHHHHEEEEEC
T ss_conf 8999999999812277988998999999999649999999-9659-8888758999999866467168999874213312
Q ss_pred HHCCCCCCHHHHH-----------HHHHHHHHHHHHH-HHHHHHCCCCCHH---------HHHHHHHHHHHCCCCCCCCC
Q ss_conf 3122334304566-----------8999999999999-9999870899689---------99999998874478667754
Q gi|254780799|r 508 LLTPVVTNPQKAV-----------TVLKWLVCEMEER-YQKMSKIGVRNID---------GFNLKVAQYHNTGKKFNRTV 566 (806)
Q Consensus 508 Ll~pVvTd~~kA~-----------~aL~w~V~EMe~R-Y~l~a~~~vRni~---------~yN~k~~~~~~~~~~~~~~~ 566 (806)
-+.+-.+.+.... ...++.-+|+.+| .+++...|..+.. |--+|+.-|++-
T Consensus 105 ~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkQRv~iArAL-------- 176 (279)
T 2ihy_A 105 SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARAL-------- 176 (279)
T ss_dssp HHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH--------
T ss_pred CCCHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHH--------
T ss_conf 530016767779999986455312433488799999999999975998786189444899999999999999--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHH-HHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 467765454322233223234698687763446-8888732100588999999866414237999965777
Q gi|254780799|r 567 QTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEM-ADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDEl-aDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
-.=|- |++-||= +-|=..+.+++-+.|.+|++.. .|+-+|+.|....
T Consensus 177 --------------------~~~P~-lLlLDEPtsgLD~~~~~~i~~ll~~l~~~~--~~~tii~vtHdl~ 224 (279)
T 2ihy_A 177 --------------------MGQPQ-VLILDEPAAGLDFIARESLLSILDSLSDSY--PTLAMIYVTHFIE 224 (279)
T ss_dssp --------------------HTCCS-EEEEESTTTTCCHHHHHHHHHHHHHHHHHC--TTCEEEEEESCGG
T ss_pred --------------------HCCCC-EEEEECCCCCCCHHHHHHHHHHHHHHHHHC--CCCEEEEECCCHH
T ss_conf --------------------66999-899958865699999999999999999748--9969999878899
No 191
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=69.90 E-value=2.4 Score=20.59 Aligned_cols=39 Identities=28% Similarity=0.374 Sum_probs=25.0
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 100202355304774067999999999998299578478885231
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
+.+==.+-|-|.+|||||-.++.|. . ||. | + ==|+||=+
T Consensus 43 i~~Ge~vaIvG~sGsGKSTLl~ll~-g-l~~--~-~-G~I~i~g~ 81 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLY-R-FYD--A-E-GDIKIGGK 81 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHT-T-SSC--C-E-EEEEETTE
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHH-C-CCC--C-C-EEEEECCE
T ss_conf 8599899999999987999999994-7-889--9-8-59999999
No 192
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=69.66 E-value=2.9 Score=20.00 Aligned_cols=164 Identities=20% Similarity=0.283 Sum_probs=83.8
Q ss_pred CEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHH--------H----------------
Q ss_conf 6678541002023553047740679999999999982995784788852310011--------1----------------
Q gi|254780799|r 445 KPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLEL--------S---------------- 500 (806)
Q Consensus 445 ~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEl--------s---------------- 500 (806)
+.+-.++.+==.+=|.|..|||||..+++| +. |+ +|+.=+ |.+|=+-+.- .
T Consensus 23 ~~isl~v~~Gei~~ivG~sGsGKSTLl~~i-~G-l~--~p~~G~-I~~~G~~v~~~~~~~~~~~~~~~~~~~~~r~~ig~ 97 (262)
T 1b0u_A 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCI-NF-LE--KPSEGA-IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTM 97 (262)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHH-TT-SS--CCSEEE-EEETTEECCEEECTTSSEEESCHHHHHHHHHHEEE
T ss_pred CCEEEEECCCCEEEEECCCCCHHHHHHHHH-HC-CC--CCCCCE-EEECCEEECCCCCCCCCCCCCCHHHHHHHHCCEEE
T ss_conf 450669879989999979997599999999-74-99--989857-99999992267742100124748789997486799
Q ss_pred HCCCCHHHHCCCCCCHHHHHHHH----HHHHHHHHHH-HHHHHHCCCCC---------HH-HHHHHHHHHHHCCCCCCCC
Q ss_conf 02770343122334304566899----9999999999-99998708996---------89-9999999887447866775
Q gi|254780799|r 501 VYDGIPNLLTPVVTNPQKAVTVL----KWLVCEMEER-YQKMSKIGVRN---------ID-GFNLKVAQYHNTGKKFNRT 565 (806)
Q Consensus 501 ~Y~~iPHLl~pVvTd~~kA~~aL----~w~V~EMe~R-Y~l~a~~~vRn---------i~-~yN~k~~~~~~~~~~~~~~ 565 (806)
+|.+ |+| -|--|=-+.....+ .|--.|+++| .+++...|..+ +. |-.+|+.-|++-
T Consensus 98 VfQ~-~~l-~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSGG~~QRv~iAraL------- 168 (262)
T 1b0u_A 98 VFQH-FNL-WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARAL------- 168 (262)
T ss_dssp ECSS-CCC-CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHH-------
T ss_pred ECCC-HHH-CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHH-------
T ss_conf 9227-024-3587799999999998618998999999999999869927775278643798999999999999-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHH
Q ss_conf 446776545432223322323469868776344-6888873210058899999986641423799996577753554355
Q gi|254780799|r 566 VQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDE-MADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTI 644 (806)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDE-laDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~i 644 (806)
-.=|- |++-|| .+.|=..+..+|-+.|.+|.+ -|+-.|+.|.-+. .+
T Consensus 169 ---------------------~~~P~-iLilDEPTs~LD~~~~~~i~~li~~l~~----~g~tii~vtHdl~------~~ 216 (262)
T 1b0u_A 169 ---------------------AMEPD-VLLFDEPTSALDPELVGEVLRIMQQLAE----EGKTMVVVTHEMG------FA 216 (262)
T ss_dssp ---------------------HTCCS-EEEEESTTTTSCHHHHHHHHHHHHHHHH----TTCCEEEECSCHH------HH
T ss_pred ---------------------HHCCC-EEEECCCCCCCCHHHHHHHHHHHHHHHH----CCCEEEEEECCHH------HH
T ss_conf ---------------------84998-4566698754797899999999997412----5988999909999------99
Q ss_pred HHCCCCEEEEE
Q ss_conf 41102515876
Q gi|254780799|r 645 KANFPTRISFQ 655 (806)
Q Consensus 645 kan~p~riaf~ 655 (806)
+.+--||++-
T Consensus 217 -~~~~Dri~vm 226 (262)
T 1b0u_A 217 -RHVSSHVIFL 226 (262)
T ss_dssp -HHHCSEEEEE
T ss_pred -HHHCCEEEEE
T ss_conf -9969999999
No 193
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=69.60 E-value=2.7 Score=20.23 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 20235530477406799999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~ 476 (806)
=|.++|.|-+|+|||--+|.+.-
T Consensus 12 ~~~i~ivG~~n~GKSsLin~l~~ 34 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
T ss_conf 96999999999999999999967
No 194
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=69.46 E-value=3.7 Score=19.17 Aligned_cols=44 Identities=25% Similarity=0.395 Sum_probs=31.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHH---------EEEEEECCCHHHHHHCC
Q ss_conf 2355304774067999999999998299578---------47888523100111027
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQ---------CRLIMIDPKMLELSVYD 503 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~e---------vkliliDPK~vEls~Y~ 503 (806)
-++|=|..|+|||-.||.++- ..-+++ .+-+++|-+.+++.+++
T Consensus 27 KIlviG~~~vGKSSLi~r~~~----~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~iwD 79 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSK----DEFPEVYVPTVFENYVADIEVDGKQVELALWD 79 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHH----SSCC-------CCEEEEEEEETTEEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH----CCCCCCCCCCEEEEEEEEEEECCEEEEEEEEE
T ss_conf 899999999789999999971----99998859814588899999999899999985
No 195
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GDP-binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=69.09 E-value=2.9 Score=19.98 Aligned_cols=44 Identities=18% Similarity=0.435 Sum_probs=30.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHH---------EEEEEECCCHHHHHHCC
Q ss_conf 2355304774067999999999998299578---------47888523100111027
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQ---------CRLIMIDPKMLELSVYD 503 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~e---------vkliliDPK~vEls~Y~ 503 (806)
-++|.|..|+|||-.||.+ +++.-|++ .+.+++|-+.+.|..++
T Consensus 20 KI~lvG~~~vGKTSli~r~----~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~d 72 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQF----MYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILD 72 (187)
T ss_dssp EEEEECSTTSSHHHHHHHH----HHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHH----HCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEE
T ss_conf 9999996998899999999----7099998778831578999884299389999985
No 196
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase, transferase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=69.08 E-value=1.1 Score=23.04 Aligned_cols=14 Identities=29% Similarity=0.681 Sum_probs=5.8
Q ss_pred HCCCCEEEEEECCC
Q ss_conf 11025158764586
Q gi|254780799|r 646 ANFPTRISFQVSSK 659 (806)
Q Consensus 646 an~p~riaf~v~s~ 659 (806)
+-||-..|++|++.
T Consensus 373 ~d~~~~~~~~~a~~ 386 (451)
T 2jlq_A 373 GDLPVWLSYKVASA 386 (451)
T ss_dssp SCCCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHC
T ss_conf 46842455688864
No 197
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi}
Probab=69.02 E-value=2.8 Score=20.10 Aligned_cols=40 Identities=13% Similarity=-0.001 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 0366135332001245556325665457899999974248632899
Q gi|254780799|r 308 VLPSKEILSTSQSPVNQMTFSPKVMQNNACTLKSVLSDFGIQGEIV 353 (806)
Q Consensus 308 kLPsLdLL~~~~~~~~~~~~s~eeL~~nA~lLE~tL~dFGVe~~Vv 353 (806)
.=|.+=|||+|.+ ..|.++.+...++| +.|++.|.-+=++
T Consensus 245 ~~pdvLlLDEPTs-----~LD~~~r~~l~~~l-~~l~~~g~tvIvV 284 (607)
T 3bk7_A 245 RKAHFYFFDEPSS-----YLDIRQRLKVARVI-RRLANEGKAVLVV 284 (607)
T ss_dssp SCCSEEEEECTTT-----TCCHHHHHHHHHHH-HHHHHTTCEEEEE
T ss_pred CCCCEEEECCCCC-----CCCHHHHHHHHHHH-HHHHHCCCEEEEE
T ss_conf 5987786068845-----59999999999999-8655238759998
No 198
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=69.00 E-value=4.4 Score=18.63 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=21.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 3553047740679999999999982
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYR 481 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk 481 (806)
.+|-|.|+.|||--||+++-+...|
T Consensus 165 v~vvG~~NvGKSTLiN~L~~~~~~k 189 (369)
T 3ec1_A 165 VYVVGCTNVGKSTFINRIIEEATGK 189 (369)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 9994688735889998775664035
No 199
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A
Probab=68.85 E-value=5.1 Score=18.14 Aligned_cols=35 Identities=6% Similarity=0.098 Sum_probs=17.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 34468888732100588999999866414237999
Q gi|254780799|r 596 IDEMADLMMVARKDIESAVQRLAQMARASGIHVIM 630 (806)
Q Consensus 596 iDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~ 630 (806)
.-|+|+-.=+++.-|-.-|.||-+.+-=-|.+.++
T Consensus 27 ~~eiA~~~gls~~tv~~Ri~rLe~~GiI~~~~~~l 61 (162)
T 2p5v_A 27 NVELSERVALSPSPCLRRLKQLEDAGIVRQYAALL 61 (162)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 99999998929999999999998579326788998
No 200
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=68.84 E-value=1.4 Score=22.45 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.7
Q ss_pred CCEEEEEECCCCHHHHHHHHHH
Q ss_conf 2023553047740679999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI 475 (806)
-|...++|-||+|||--+|++.
T Consensus 26 ~~~I~lvG~~nvGKSSLiN~L~ 47 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 9789999999998999999995
No 201
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=68.74 E-value=2.6 Score=20.29 Aligned_cols=66 Identities=23% Similarity=0.354 Sum_probs=37.2
Q ss_pred EEEHHHH-HHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHCCCCCH
Q ss_conf 7763446-888873210058899999986641423799996577753554355411025158764586642123388645
Q gi|254780799|r 593 VVVIDEM-ADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQGA 671 (806)
Q Consensus 593 vviiDEl-aDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtild~~ga 671 (806)
|+|.||- +-|=-...+.+.+.+.++.+ |.-.|+.|+|++. ++ .--||.+= |.=.|..++-.
T Consensus 160 ililDEpTs~LD~~~~~~i~~~l~~l~~-----~~Tvi~itH~l~~------~~--~~D~I~vl-----~~G~iv~~G~~ 221 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMK-----GRTTLVIAHRLST------IV--DADKIYFI-----EKGQITGSGKH 221 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHT-----TSEEEEECCSHHH------HH--HCSEEEEE-----ETTEECCCSCH
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHC-----CCEEEEEECCHHH------HH--HCCEEEEE-----ECCEEEEECCH
T ss_conf 8994487655798899999999999858-----9989999678999------98--59999999-----89999999899
Q ss_pred HHHCC
Q ss_conf 78658
Q gi|254780799|r 672 EQLLG 676 (806)
Q Consensus 672 e~Llg 676 (806)
+.|+-
T Consensus 222 ~eLl~ 226 (243)
T 1mv5_A 222 NELVA 226 (243)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99987
No 202
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=68.39 E-value=1.3 Score=22.58 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=9.7
Q ss_pred CHHHHHHHHHHHHHCCC
Q ss_conf 98899999999971289
Q gi|254780799|r 698 SDIEVEKVVSHLKTQGE 714 (806)
Q Consensus 698 ~~~ev~~v~~~~~~q~~ 714 (806)
|-.+++++.+.+++.+.
T Consensus 186 s~~~~e~la~~L~~~g~ 202 (440)
T 1yks_A 186 SIRAANVMAASLRKAGK 202 (440)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCCC
T ss_conf 59999999999985898
No 203
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hyperthermostable protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus HB8} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=68.32 E-value=3.8 Score=19.07 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=9.9
Q ss_pred HHHHHCCCHHHHHHHHHHHH
Q ss_conf 42220011778999999999
Q gi|254780799|r 761 IQRRLGIGYNRAASIIENME 780 (806)
Q Consensus 761 lqr~~~igy~raar~~~~~e 780 (806)
.|--=..-|-+||+|=|++-
T Consensus 621 ~~~a~~~~~e~a~~~rd~~~ 640 (664)
T 1c4o_A 621 WQAAEALDFERAARLRDEIR 640 (664)
T ss_dssp --------------------
T ss_pred HHHHHHCCHHHHHHHHHHHH
T ss_conf 99998378999999899999
No 204
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=67.74 E-value=2.6 Score=20.31 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=28.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHH---------EEEEEECCCHHHHHHCC
Q ss_conf 2355304774067999999999998299578---------47888523100111027
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQ---------CRLIMIDPKMLELSVYD 503 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~e---------vkliliDPK~vEls~Y~ 503 (806)
-++|-|..|+|||--+|.++. ..-+++ .+.+.+|.+.+.|.+|+
T Consensus 26 KI~vvG~~~vGKTsLi~r~~~----~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D 78 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVE----GEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH----SCCCSCCCCCSEEEEEEEEC----CEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH----CCCCCCCCCCCCEEEEEEEEECCEEEEEEEEE
T ss_conf 899999799889999999971----99999879964678999999999899999996
No 205
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=67.60 E-value=3.2 Score=19.68 Aligned_cols=60 Identities=23% Similarity=0.386 Sum_probs=33.6
Q ss_pred CCCEEEEECCCCCE--EEEEECCCCHHHHHHHHHHHHHHHHC-CHH----HEEEEEECCCHHHHHHCC
Q ss_conf 66667854100202--35530477406799999999999829-957----847888523100111027
Q gi|254780799|r 443 EGKPIIADLARMPH--LLIAGTTGSGKSVAINTMILSLLYRM-TPA----QCRLIMIDPKMLELSVYD 503 (806)
Q Consensus 443 ~G~pvv~DLakMPH--LLIAGtTGSGKSV~iN~iI~SlLyk~-~P~----evkliliDPK~vEls~Y~ 503 (806)
||++=.. --.||+ ++|-|..|+|||--||.++..=.... .|. -..-++++.+.+.+...+
T Consensus 9 ~~~~~~~-~~~~~e~KI~vlG~~~vGKTSLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d 75 (190)
T 3con_A 9 SGRENLY-FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 75 (190)
T ss_dssp -----------CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCCC-CCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEC
T ss_conf 9987756-689985699999999919999999997298888768842246877885389179878742
No 206
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=67.57 E-value=5 Score=18.23 Aligned_cols=54 Identities=24% Similarity=0.285 Sum_probs=36.6
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEE
Q ss_conf 99999996598500014222001177899999999977986802-2788726731
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILI 798 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~ 798 (806)
.++.++...+-.+.+-|-+++.+-..-..|+++.||++|+|--. +..-.|.+++
T Consensus 50 ~vL~~l~~~~~~t~~~La~~l~~~~~~vs~~l~~L~~~gli~r~~~~~D~R~~~l 104 (162)
T 3k0l_A 50 TALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILV 104 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEE
T ss_conf 9999999779989999999989688699999999998899798527999875687
No 207
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic transport, mRNA export, protein interaction; HET: ADP; 2.51A {Homo sapiens}
Probab=67.54 E-value=3.7 Score=19.19 Aligned_cols=23 Identities=30% Similarity=0.681 Sum_probs=16.4
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 23553047740679999999999982
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYR 481 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk 481 (806)
++++..-|||||+.+ ..+.++.+
T Consensus 133 dviv~a~TGSGKTla---f~lpi~~~ 155 (300)
T 3fmo_B 133 NLIAQSQSGTGKTAA---FVLAMLSQ 155 (300)
T ss_dssp CEEEECCTTSSHHHH---HHHHHHHH
T ss_pred EEEEECCCCCCHHHH---HHCCHHHC
T ss_conf 299986899827888---62201212
No 208
>3khd_A Pyruvate kinase; malaria, structural genomics, structural genomics consortium, SGC; 2.70A {Plasmodium falciparum 3D7}
Probab=67.54 E-value=1.4 Score=22.31 Aligned_cols=128 Identities=20% Similarity=0.297 Sum_probs=72.7
Q ss_pred HHHCCCC--H--HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-CCCCCCCCCCCCCCCC
Q ss_conf 1102770--3--431223343045668999999999999999987089968999999998874-4786677544677654
Q gi|254780799|r 499 LSVYDGI--P--NLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHN-TGKKFNRTVQTGFDRK 573 (806)
Q Consensus 499 ls~Y~~i--P--HLl~pVvTd~~kA~~aL~w~V~EMe~RY~l~a~~~vRni~~yN~k~~~~~~-~~~~~~~~~~~~~~~~ 573 (806)
|.-+.|| | ++-.|..|+-++ ...++|++ +...+..+-.-||+-+.-.+ +++..+ .|... .+.
T Consensus 196 L~s~Kgvn~p~~~~~~~~ltekd~-~~~~~~a~---~~~vD~ialSfV~s~~di~~-~r~~l~~~g~~~--~Ii------ 262 (520)
T 3khd_A 196 IGERKNMNLPNVKVDLPIISEKDK-NDILNFAI---PMGCNFIAASFIQSADDVRL-IRNLLGPRGRHI--KII------ 262 (520)
T ss_dssp CCSSCEEECTTSCCCSCSSCHHHH-HHHHHTHH---HHTCCEEEETTCCSHHHHHH-HHHHHTTTTTTS--EEE------
T ss_pred ECCCCEEECCCCCCCCCCCCCCHH-HHHHHHHH---HCCCCEEEECCCCCHHHHHH-HHHHHHHCCCCE--EEE------
T ss_conf 468855850576557776650039-99999998---74998675337785677899-999999759840--125------
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCH---------HHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHH
Q ss_conf 543222332232346986877634468888732100---------58899999986641423799996577753554355
Q gi|254780799|r 574 TGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKD---------IESAVQRLAQMARASGIHVIMATQRPSVDVITGTI 644 (806)
Q Consensus 574 ~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~~---------ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~i 644 (806)
+..| ....++.|.-|+ +-+|-+|+|..| |=..-.++-+++|.+|.-.|+||| +.--++
T Consensus 263 ---aKIE-~~~al~nl~eI~----~~sDgimIaRGDLg~e~~~e~vp~~Qk~Ii~~~~~~~kPvivATq-----mLeSM~ 329 (520)
T 3khd_A 263 ---PKIE-NIEGIIHFDKIL----AESDGIMIARGDLGMEISPEKVFLAQKLMISKCNLQGKPIITATQ-----MLESMT 329 (520)
T ss_dssp ---EEEC-SHHHHHTHHHHH----HHSSCEEECHHHHTTTSCGGGHHHHHHHHHHHHHHHTCCEEECCC-----CCGGGG
T ss_pred ---EEEH-HHHHHHHHHHHH----HCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECH-----HHHHHH
T ss_conf ---4212-277665067788----508889998885020189989569899999999972996999876-----899886
Q ss_pred HHCCCCEE
Q ss_conf 41102515
Q gi|254780799|r 645 KANFPTRI 652 (806)
Q Consensus 645 kan~p~ri 652 (806)
+...|||-
T Consensus 330 ~~p~PTRA 337 (520)
T 3khd_A 330 KNPRPTRA 337 (520)
T ss_dssp TCSSCCHH
T ss_pred HCCCCCCH
T ss_conf 28877533
No 209
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=67.47 E-value=2 Score=21.23 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=25.4
Q ss_pred CCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 346986877634468888732100588999999866414237999965777
Q gi|254780799|r 586 FQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 586 ~~~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
+..+-+ +|||| ||.++..+. ...+.+.....+...+.....+..|.
T Consensus 127 ~~~~~~--liiDE-~h~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ 172 (337)
T 2z0m_A 127 LSSFEI--VIIDE-ADLMFEMGF--IDDIKIILAQTSNRKITGLFSATIPE 172 (337)
T ss_dssp GGGCSE--EEEES-HHHHHHTTC--HHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred CCCEEE--EEEEC-CCCCCCCCC--HHHHHHHHCCCCCCCEEEEEECCCCH
T ss_conf 354169--99956-532245551--35666542134332022211025878
No 210
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=67.22 E-value=2.7 Score=20.16 Aligned_cols=19 Identities=32% Similarity=0.635 Sum_probs=16.7
Q ss_pred EEEEECCCCHHHHHHHHHH
Q ss_conf 3553047740679999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI 475 (806)
-.++|..|.|||--||+++
T Consensus 168 sv~~G~SGVGKSSLIN~L~ 186 (302)
T 2yv5_A 168 CILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHCC
T ss_conf 9998989967878876137
No 211
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 2zzy_A
Probab=66.97 E-value=2.8 Score=20.10 Aligned_cols=29 Identities=31% Similarity=0.613 Sum_probs=20.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEE
Q ss_conf 3553047740679999999999982995784788
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLI 490 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkli 490 (806)
+.|-|.+|||||. |+-.|++..|+.+.+.
T Consensus 4 Ivl~GpsGsGK~T-----l~~~L~~~~~~~~~~~ 32 (186)
T 3a00_A 4 IVISGPSGTGKST-----LLKKLFAEYPDSFGFS 32 (186)
T ss_dssp EEEESSSSSSHHH-----HHHHHHHHCGGGEECC
T ss_pred EEEECCCCCCHHH-----HHHHHHHHCCCCEEEE
T ss_conf 9998999999899-----9999997488775764
No 212
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=66.96 E-value=3.6 Score=19.28 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=22.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 2355304774067999999999998299578478885231
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
+++++.-|||||+.+.---++..+. ..+..++-+.+=|-
T Consensus 53 dvii~a~TGSGKTlay~lp~~~~~~-~~~~~~~~lil~Pt 91 (220)
T 1t6n_A 53 DVLCQAKSGMGKTAVFVLATLQQLE-PVTGQVSVLVMCHT 91 (220)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCC-CCTTCCCEEEECSC
T ss_pred CEEEECCCCCCCHHHHCCCHHHCCC-CCCCCCEEEEECCC
T ss_conf 8899777998720131141121135-67788318993798
No 213
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=66.84 E-value=1.7 Score=21.77 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=27.9
Q ss_pred HHHHHCCEEEEEEECCCCCCCCCHHHHHCCCC------EEEEEECCCCCCHHHCC
Q ss_conf 86641423799996577753554355411025------15876458664212338
Q gi|254780799|r 619 QMARASGIHVIMATQRPSVDVITGTIKANFPT------RISFQVSSKIDSRTILG 667 (806)
Q Consensus 619 q~ara~GiHli~aTqrPsvdvitg~ikan~p~------riaf~v~s~~dSrtild 667 (806)
|+.+| |+++ -..|.||+-...|--.||| .|-|+--.++|=+-.|+
T Consensus 198 q~~~a---Di~i-~r~p~~dts~~~~~~~ip~~~e~~~~~~~~~~~~~d~~~l~~ 248 (290)
T 1a7j_A 198 QFSQT---DINF-QRVPVVDTSNPFIARWIPTADESVVVIRFRNPRGIDFPYLTS 248 (290)
T ss_dssp GGGTC---SEEE-EEEESSCCSCGGGCCSCCCGGGEEEEEEESSCSSCCHHHHHH
T ss_pred CCCCC---CEEE-EECCCCCCCCCCEECCCCCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 40004---5899-855775556643003579976567999816854488799998
No 214
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=66.79 E-value=3.1 Score=19.75 Aligned_cols=19 Identities=37% Similarity=0.656 Sum_probs=15.1
Q ss_pred CCEEE-EEECCCCHHHHHHH
Q ss_conf 20235-53047740679999
Q gi|254780799|r 454 MPHLL-IAGTTGSGKSVAIN 472 (806)
Q Consensus 454 MPHLL-IAGtTGSGKSV~iN 472 (806)
||-+. |.|..|||||---+
T Consensus 1 M~~iIgitG~igSGKStv~~ 20 (206)
T 1jjv_A 1 MTYIVGLTGGIGSGKTTIAN 20 (206)
T ss_dssp CCEEEEEECSTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
T ss_conf 98899988998766999999
No 215
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell membrane, GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A*
Probab=66.73 E-value=3.5 Score=19.41 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=17.8
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 23553047740679999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI 475 (806)
+.-+.|.+|+|||-.+|++.
T Consensus 5 ~I~lvG~~nvGKSTLin~L~ 24 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLT 24 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999899997999999996
No 216
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=66.49 E-value=2.2 Score=20.87 Aligned_cols=34 Identities=24% Similarity=0.480 Sum_probs=22.2
Q ss_pred CCEEEEECCC-CC-EEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 6667854100-20-235530477406799999999999
Q gi|254780799|r 444 GKPIIADLAR-MP-HLLIAGTTGSGKSVAINTMILSLL 479 (806)
Q Consensus 444 G~pvv~DLak-MP-HLLIAGtTGSGKSV~iN~iI~SlL 479 (806)
-+-+..|+.+ .| +.|+-|-|||||+.|- ++..+.
T Consensus 612 ~~~i~~~~~~~~~~~~L~~g~tGsGKT~v~--~~a~~~ 647 (1151)
T 2eyq_A 612 INAVLSDMCQPLAMDRLVCGDVGFGKTEVA--MRAAFL 647 (1151)
T ss_dssp HHHHHHHHHSSSCCEEEEECCCCTTTHHHH--HHHHHH
T ss_pred HHHHHHHHHCCCHHHHEEECCCCCCHHHHH--HHHHHH
T ss_conf 999988760685566643407898669999--999999
No 217
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme A kinase, structural genomics, joint center for structural genomics, JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=66.46 E-value=3.1 Score=19.72 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=16.2
Q ss_pred CCEEEE--EECCCCHHHHHHHHH
Q ss_conf 202355--304774067999999
Q gi|254780799|r 454 MPHLLI--AGTTGSGKSVAINTM 474 (806)
Q Consensus 454 MPHLLI--AGtTGSGKSV~iN~i 474 (806)
-||++| .|..|||||..-+-+
T Consensus 10 ~~~mIIgiTG~igSGKStv~~~l 32 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEIL 32 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
T ss_conf 57779998789878899999999
No 218
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=66.41 E-value=3.5 Score=19.35 Aligned_cols=48 Identities=15% Similarity=0.344 Sum_probs=29.1
Q ss_pred CCCCE--EEEEECCCCHHHHHHHHHHHHHHHHCCHHH---------EEEEEECCCHHHHHHCC
Q ss_conf 00202--355304774067999999999998299578---------47888523100111027
Q gi|254780799|r 452 ARMPH--LLIAGTTGSGKSVAINTMILSLLYRMTPAQ---------CRLIMIDPKMLELSVYD 503 (806)
Q Consensus 452 akMPH--LLIAGtTGSGKSV~iN~iI~SlLyk~~P~e---------vkliliDPK~vEls~Y~ 503 (806)
+++|+ +++.|.-|+|||-.||.++. ..-+++ .+-+.++.+.+.+.+++
T Consensus 10 ~~~~~~KIviiG~~~vGKTsli~r~~~----~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d 68 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMY----DEFVEDYEPTKADSYRKKVVLDGEEVQIDILD 68 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHH----SCCCTTCCTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHC----CCCCCCCCCCEEEEEEEEEEECCEEEEEEEEE
T ss_conf 876337999999899889999999961----99999869924589999998666688888864
No 219
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=66.40 E-value=5.7 Score=17.80 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=6.8
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 98899999999971
Q gi|254780799|r 698 SDIEVEKVVSHLKT 711 (806)
Q Consensus 698 ~~~ev~~v~~~~~~ 711 (806)
+-++.+++++.+++
T Consensus 114 ~~~~l~~~~~~i~~ 127 (150)
T 2w25_A 114 SARALEDLLQRIRT 127 (150)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCC
T ss_conf 99999999998606
No 220
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=66.29 E-value=3.6 Score=19.28 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=19.1
Q ss_pred CCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 02023553047740679999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI 475 (806)
+=|-+++-|.+|+|||.-+|.+.
T Consensus 19 ~~~KI~l~G~~~vGKSSLi~~l~ 41 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVF 41 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 84289999989989999999996
No 221
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=66.22 E-value=3.2 Score=19.67 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=16.8
Q ss_pred EEEEECCCCHHHHHHHHHH
Q ss_conf 3553047740679999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI 475 (806)
+.+.|-||+|||--+|+++
T Consensus 6 V~lvG~~~~GKSsLi~~L~ 24 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999899998999999997
No 222
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=66.07 E-value=3.5 Score=19.35 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=43.6
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH-CCCCCEEEECHH
Q ss_conf 999999965985000142220011778999999999779868022-788726731712
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPAS-STGKREILISSM 801 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~-g~~~r~vl~~~~ 801 (806)
.++.++-+.+..+.+-|-+++.+-=.-+.|+++.||++|+|--.. ..-.|.+++.-.
T Consensus 44 ~vL~~L~~~~~~t~~~la~~l~i~~~~vsr~l~~L~~~gli~r~~~~~D~R~~~l~LT 101 (148)
T 3nrv_A 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLT 101 (148)
T ss_dssp HHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEEC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEECCCCCCCCEECCCCC
T ss_conf 9999999779979999999989699899999999850793642479988883004339
No 223
>3bos_A Putative DNA replication factor; YP_927791.1, putative DNA replication regulator HDA, structural genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis SB2B}
Probab=66.06 E-value=5.8 Score=17.75 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=22.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 0202355304774067999999999998
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLY 480 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLy 480 (806)
..+||++-|..|||||-..+++.-.+..
T Consensus 51 ~~~~l~l~Gp~GsGKThL~~ai~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9885988899999899999999998542
No 224
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.20A {Pyrococcus horikoshii OT3} PDB: 2d3k_A
Probab=66.04 E-value=4.5 Score=18.55 Aligned_cols=47 Identities=23% Similarity=0.528 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEE------EEEECCEEEEEEEEECCCCCHHHHHH
Q ss_conf 25665457899999974248632899------84104424444432147863999997
Q gi|254780799|r 328 SPKVMQNNACTLKSVLSDFGIQGEIV------NVRPGPVITLYELEPAPGIKSSRIIG 379 (806)
Q Consensus 328 s~eeL~~nA~lLE~tL~dFGVe~~Vv------~v~pGPVVTrYEi~PApGVKvSKI~n 379 (806)
|+++|++ |.+++++.|+...++ ++-|| ++|.--|-|+|--++.+|++
T Consensus 64 ~e~~L~~----l~~~a~~~~l~~~~i~DAG~Tei~~g-t~TvlaigP~~~~~id~it~ 116 (121)
T 1wn2_A 64 SEEELFK----LKAEAEKLGLPNALIRDAGLTEIPPG-TVTVLAVGPAPEEIVDKVTG 116 (121)
T ss_dssp SHHHHHH----HHHHHHHTTCCEEEEECTTCTTSCTT-CEEEEEEEEEEHHHHHHHHT
T ss_pred CHHHHHH----HHHHHHHCCCCEEEEECCCCCEECCC-CEEEEEECCCCHHHHHHHHC
T ss_conf 9999999----99999987998899984898550999-97899978788789888748
No 225
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=66.01 E-value=3.4 Score=19.44 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=19.6
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 2023553047740679999999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~Sl 478 (806)
|.=.+|.|..|||||--.+-+--.|
T Consensus 1 mkiivi~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9299998999979899999999999
No 226
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=65.97 E-value=3.6 Score=19.27 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=19.3
Q ss_pred CCE--EEEEECCCCHHHHHHHHHHH
Q ss_conf 202--35530477406799999999
Q gi|254780799|r 454 MPH--LLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 454 MPH--LLIAGtTGSGKSV~iN~iI~ 476 (806)
|.| ++|-|..|+|||-.+|.++-
T Consensus 1 m~~~Kv~vvG~~~vGKTsli~r~~~ 25 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9557999999799599999999971
No 227
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=65.91 E-value=5.8 Score=17.73 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHH---CC------CE-EEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCC
Q ss_conf 887777038999999996---59------85-0001422200117789999999997798680227887
Q gi|254780799|r 735 NSSVADDLYKQAVDIVLR---DN------KA-SISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGK 793 (806)
Q Consensus 735 ~~~~~d~l~~~a~~~v~~---~~------~~-s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g~~~ 793 (806)
+.+...|+|.|..+.+.+ +| +- |..-|-.+|.|+-+-.-+=+.+||++|+|-...|+|.
T Consensus 7 ~~~s~~PlY~qI~~~i~~~I~~G~l~~G~~LPser~La~~~~VSr~tVr~Al~~L~~~Glv~~~~g~G~ 75 (125)
T 3neu_A 7 TFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRGMGS 75 (125)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEE
T ss_conf 888998899999999999998499999699954999999939288999999999998891799638679
No 228
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3e0w_A 3e0v_A
Probab=65.49 E-value=1.9 Score=21.29 Aligned_cols=116 Identities=27% Similarity=0.263 Sum_probs=68.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22334304566899999999999999998708996899999999887-44786677544677654543222332232346
Q gi|254780799|r 510 TPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYH-NTGKKFNRTVQTGFDRKTGEAIYETEHFDFQH 588 (806)
Q Consensus 510 ~pVvTd~~kA~~aL~w~V~EMe~RY~l~a~~~vRni~~yN~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (806)
.|..|+ |-...|+|+++ .--+..+-.-||+-+.-.+ +++.. ..|.. -++..- .| ....++.
T Consensus 187 lp~lte--kD~~di~~a~~---~~vD~valSFVrs~~dv~~-lr~~l~~~~~~--~~iiaK---------IE-~~~a~~n 248 (499)
T 3hqn_D 187 LPAVSA--KDRVDLQFGVE---QGVDMIFASFIRSAEQVGD-VRKALGPKGRD--IMIICK---------IE-NHQGVQN 248 (499)
T ss_dssp CCSSCH--HHHHHHHHHHH---TTCSEEEETTCCSHHHHHH-HHHHHCGGGTT--SEEEEE---------EC-SHHHHHT
T ss_pred CCCCCH--HHHHHHHHHHH---CCCCEEEECCCCCHHHHHH-HHHHHHHCCCC--CEEEEE---------EC-CHHHHHH
T ss_conf 644551--01999999996---1899899668898789999-99999971998--669999---------62-7888864
Q ss_pred CCEEEEEHHHHHHHHHHCCCH--HH-------HHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEE
Q ss_conf 986877634468888732100--58-------89999998664142379999657775355435541102515
Q gi|254780799|r 589 MPYIVVVIDEMADLMMVARKD--IE-------SAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRI 652 (806)
Q Consensus 589 lp~ivviiDElaDlmm~~~~~--ve-------~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~ri 652 (806)
+.- |-+.+|-+|+|..| +| ..-.++-+++|++|--.|+||| +.--+|....|||-
T Consensus 249 l~e----I~~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~gKpvivATq-----mLeSM~~~p~PTRA 312 (499)
T 3hqn_D 249 IDS----IIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQ-----MLESMTYNPRPTRA 312 (499)
T ss_dssp HHH----HHHHSSEEEEEHHHHHHHSCHHHHHHHHHHHHHHHHHHTCCEEEESS-----SSGGGGTSSSCCHH
T ss_pred HHH----HHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEHH-----HHHHHHHCCCCCHH
T ss_conf 888----77646489996566323289878389999999999982994896168-----78988758999727
No 229
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=65.19 E-value=5.9 Score=17.67 Aligned_cols=55 Identities=9% Similarity=0.247 Sum_probs=37.5
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEEC
Q ss_conf 99999996598500014222001177899999999977986802-27887267317
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILIS 799 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~ 799 (806)
.+..++...+..+.+-|.+++.+-=.-+.|+++.||++|+|--. +..-.|.+++.
T Consensus 40 ~vL~~l~~~~~~~~~~la~~l~i~~~~vs~~i~~L~~~glI~~~~~~~D~R~~~l~ 95 (142)
T 2fbi_A 40 RVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVN 95 (142)
T ss_dssp HHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEE
T ss_conf 99999998799799999999798988999999999958987983068898867878
No 230
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transferase; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=65.19 E-value=1.5 Score=22.23 Aligned_cols=117 Identities=21% Similarity=0.233 Sum_probs=68.5
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12233430456689999999999999999870899689999999988-74478667754467765454322233223234
Q gi|254780799|r 509 LTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQY-HNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQ 587 (806)
Q Consensus 509 l~pVvTd~~kA~~aL~w~V~EMe~RY~l~a~~~vRni~~yN~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (806)
-.|.+|+ |-...|+|+++. --+..+-.-||+-+.-.+ +++. ...|+. -++.. .. +....++
T Consensus 187 ~~~~lte--kD~~di~~~~~~---~~d~ialSFV~s~~dv~~-~r~~l~~~~~~--~~Iia---------KI-E~~~a~~ 248 (500)
T 1a3w_A 187 DLPALSE--KDKEDLRFGVKN---GVHMVFASFIRTANDVLT-IREVLGEQGKD--VKIIV---------KI-ENQQGVN 248 (500)
T ss_dssp CCCSSCH--HHHHHHHHHHHH---TCSEEEECSCCSHHHHHH-HHHHHHHHHTT--SEEEE---------EE-CSSHHHH
T ss_pred CCCCCCH--HHHHHHHHHHHC---CCCEEEECCCCCHHHHHH-HHHHHHHCCCC--CEEEE---------EE-CCHHHHH
T ss_conf 6755762--309998558761---987898457674567999-99999970997--16999---------85-2688887
Q ss_pred CCCEEEEEHHHHHHHHHHCCCH---------HHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEE
Q ss_conf 6986877634468888732100---------5889999998664142379999657775355435541102515
Q gi|254780799|r 588 HMPYIVVVIDEMADLMMVARKD---------IESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRI 652 (806)
Q Consensus 588 ~lp~ivviiDElaDlmm~~~~~---------ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~ri 652 (806)
.|+-|+ +.+|-+|+|..| |=..--++-+++|++|.-.|+||| +.--+++...|||-
T Consensus 249 nl~~I~----~~sDgimiaRGDLg~e~~~e~vp~~Qk~ii~~~~~~~kpvi~ATq-----mLeSM~~~p~PTRA 313 (500)
T 1a3w_A 249 NFDEIL----KVTDGVMVARGDLGIEIPAPEVLAVQKKLIAKSNLAGKPVICATQ-----MLESMTYNPRPTRA 313 (500)
T ss_dssp SHHHHH----HHSSEEEECHHHHHHHTTGGGHHHHHHHHHHHHHHHTCCEEECSS-----TTGGGGSCSSCCHH
T ss_pred HHHHHH----HHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEHH-----HHHHHHHCCCCCHH
T ss_conf 369988----437669998886313289777259999999999983992999215-----78988638877328
No 231
>1ii8_A RAD50 ABC-ATPase; MRE11, DNA double-strand break repair, replication; 3.02A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=65.17 E-value=4 Score=18.92 Aligned_cols=30 Identities=33% Similarity=0.567 Sum_probs=20.6
Q ss_pred EECCCCCEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 54100202355304774067999999999998
Q gi|254780799|r 449 ADLARMPHLLIAGTTGSGKSVAINTMILSLLY 480 (806)
Q Consensus 449 ~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLy 480 (806)
.++.+ ..-+|-|.+|||||--+.+|-. .||
T Consensus 19 i~f~~-gl~~i~G~NGsGKStil~Ai~~-~L~ 48 (195)
T 1ii8_A 19 VEFKE-GINLIIGQNGSGKSSLLDAILV-GLY 48 (195)
T ss_dssp EECCS-EEEEEECCTTSSHHHHHHHHHH-HHH
T ss_pred EECCC-CEEEEECCCCCCCCCHHHHHHH-HCC
T ss_conf 97399-8089988899982008774677-604
No 232
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=65.10 E-value=2.8 Score=20.08 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=16.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHH
Q ss_conf 2355304774067999999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~S 477 (806)
|+++...|||||+.|.--=+++
T Consensus 53 dvii~a~TGsGKTlay~lp~i~ 74 (224)
T 1qde_A 53 DVLAQAQSGTGKTGTFSIAALQ 74 (224)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCCEEEEECHHHH
T ss_conf 8899898888751245211055
No 233
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=64.93 E-value=3.6 Score=19.29 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=15.7
Q ss_pred CCCEEE-EEECCCCHHHHHHHH
Q ss_conf 020235-530477406799999
Q gi|254780799|r 453 RMPHLL-IAGTTGSGKSVAINT 473 (806)
Q Consensus 453 kMPHLL-IAGtTGSGKSV~iN~ 473 (806)
.|+.++ |.|..|||||..-+-
T Consensus 2 ~m~~IIgItG~igSGKStva~~ 23 (218)
T 1vht_A 2 SLRYIVALTGGIGSGKSTVANA 23 (218)
T ss_dssp CCCEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
T ss_conf 9776999879887879999999
No 234
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=64.70 E-value=3.6 Score=19.24 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=20.9
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 02023553047740679999999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~Sl 478 (806)
..||+|+-|..|+||+-.++.+.-.+
T Consensus 76 ~~~~lLL~GPpG~GKTTla~~lAkel 101 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 88779998999703999999999981
No 235
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=64.52 E-value=4.2 Score=18.81 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=19.8
Q ss_pred CEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEE
Q ss_conf 8687763446888873210058899999986641423799996
Q gi|254780799|r 590 PYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMAT 632 (806)
Q Consensus 590 p~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aT 632 (806)
.+-+||+||.-.+. +.+ -.+++++..+.-+...-||
T Consensus 192 ~~~lvI~DE~h~~~--~~~-----~~~i~~~~~~~~~l~ltaT 227 (472)
T 2fwr_A 192 RFMLLIFDEVHHLP--AES-----YVQIAQMSIAPFRLGLTAT 227 (472)
T ss_dssp TCSEEEEETGGGTT--STT-----THHHHHTCCCSEEEEEESC
T ss_pred CCCEEEEECHHHCC--CHH-----HHHHHHCCCCCEEEEEEEE
T ss_conf 66789952202001--001-----3565422540047631001
No 236
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=64.32 E-value=3.7 Score=19.21 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=16.8
Q ss_pred HHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99999965985000142220011778999999999779868
Q gi|254780799|r 746 AVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIG 786 (806)
Q Consensus 746 a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~ 786 (806)
++..+...+-.|.+-|=+++.|--..+.|+++.||++|+|-
T Consensus 54 iL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~glv~ 94 (162)
T 2fa5_A 54 VITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIR 94 (162)
T ss_dssp HHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 99999867998999999997878715999999998579873
No 237
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=64.09 E-value=1.9 Score=21.34 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=17.9
Q ss_pred ECCCCCEEEEEECCCCHHHHH
Q ss_conf 410020235530477406799
Q gi|254780799|r 450 DLARMPHLLIAGTTGSGKSVA 470 (806)
Q Consensus 450 DLakMPHLLIAGtTGSGKSV~ 470 (806)
++-|.+.+++.|..|||||-=
T Consensus 8 ~~~k~kiI~l~G~pGSGKsT~ 28 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHH
T ss_pred HCCCCCEEEEECCCCCCHHHH
T ss_conf 654786899989999998999
No 238
>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=64.04 E-value=2.2 Score=20.86 Aligned_cols=54 Identities=15% Similarity=0.294 Sum_probs=30.5
Q ss_pred HHHHHHHC-CCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEEC
Q ss_conf 99999965-98500014222001177899999999977986802-27887267317
Q gi|254780799|r 746 AVDIVLRD-NKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILIS 799 (806)
Q Consensus 746 a~~~v~~~-~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~ 799 (806)
++..+.+. +..+.+-|-+++.+-.....|+++.||++|+|--. +..-.|.+++.
T Consensus 52 vL~~L~~~~~~~t~~~La~~~~v~~~~vs~~i~~Le~~Glv~r~~~~~DrR~~~v~ 107 (160)
T 3boq_A 52 AMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAK 107 (160)
T ss_dssp HHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEE
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEE
T ss_conf 99999868999989999999896885899999999867987987768888757887
No 239
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=63.98 E-value=1.9 Score=21.44 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHCCCCCHHHC
Q ss_conf 89999999997798680227
Q gi|254780799|r 771 RAASIIENMEEKGVIGPASS 790 (806)
Q Consensus 771 raar~~~~~e~~giv~~~~g 790 (806)
..-|++++|..+|++-...|
T Consensus 468 ~~~~~~~~l~~~~~l~~~~~ 487 (523)
T 1oyw_A 468 HWVSVIRQLIHLGLVTQNIA 487 (523)
T ss_dssp HHHHHHHHHHHTTSEEEEGG
T ss_pred HHHHHHHHHHHCCCCEEECC
T ss_conf 99999999998498455047
No 240
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=63.79 E-value=2.6 Score=20.32 Aligned_cols=125 Identities=12% Similarity=0.083 Sum_probs=52.5
Q ss_pred CCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEEC--CCCCC
Q ss_conf 2346986877634468888732100588999999866414237999965777535543554110251587645--86642
Q gi|254780799|r 585 DFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVS--SKIDS 662 (806)
Q Consensus 585 ~~~~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~--s~~dS 662 (806)
.+..+-++ ++||...+.. ....+..+.+|-. ..-...+.++.+.-+..+.. ...+..........+. .....
T Consensus 149 ~l~~~~~l--~~de~~~~~~--~~~~~~~i~~i~~-~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~ 222 (391)
T 1xti_A 149 NLKHIKHF--ILDECDKMLE--QLDMRRDVQEIFR-MTPHEKQVMMFSATLSKEIR-PVCRKFMQDPMEIFVDDETKLTL 222 (391)
T ss_dssp CCTTCSEE--EECSHHHHTS--SHHHHHHHHHHHH-TSCSSSEEEEEESSCCSTHH-HHHHHHCSSCEEEECCCCCCCCC
T ss_pred CCCEEEEE--EEEEEEECCC--CCCCHHHHHHHHH-HCCCCCEEEEEECCCCHHHH-HHHHHHCCCCEEEEECCCCCCCC
T ss_conf 56557899--9986520001--2352899999998-58987547887232424689-99987346982999556676541
Q ss_pred HHHCCCCCHHHHCCCCCEEEE-CCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
Q ss_conf 123388645786588754773-68983258883348988999999999712897
Q gi|254780799|r 663 RTILGEQGAEQLLGQGDMLYM-TGGGRVQRIHGPFVSDIEVEKVVSHLKTQGEA 715 (806)
Q Consensus 663 rtild~~gae~Llg~gdml~~-~~~~~~~r~~g~~v~~~ev~~v~~~~~~q~~~ 715 (806)
..+.........-=.-+.|+. .......++=-.+.+...++.+..+++.++.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ii~~~~~~~~~~l~~~L~~~~~~ 276 (391)
T 1xti_A 223 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFP 276 (391)
T ss_dssp TTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEEEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCC
T ss_conf 015778753002457888988876530231135540226899999999865997
No 241
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 1xcg_B 1tx4_B* 1kmq_A* 1dpf_A* ...
Probab=63.71 E-value=5 Score=18.20 Aligned_cols=44 Identities=27% Similarity=0.400 Sum_probs=30.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHH---------HEEEEEECCCHHHHHHCC
Q ss_conf 235530477406799999999999829957---------847888523100111027
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPA---------QCRLIMIDPKMLELSVYD 503 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~---------evkliliDPK~vEls~Y~ 503 (806)
-++|-|..|+|||-.+|.++- +.-++ -.+.+.+|-+.++|.+++
T Consensus 27 KvvvlG~~~vGKTsLi~r~~~----~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D 79 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSK----DQFPEVYVPTVFENYIADIEVDGKQVELALWD 79 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH----SSCCSSCCCSSCCCCEEEEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHC----CCCCCCCCCEEEEEEEEEEEECCEEEEEEEEE
T ss_conf 899999999798999999960----88988769814688899999999899999973
No 242
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C*
Probab=63.68 E-value=6 Score=17.60 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=30.9
Q ss_pred CEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 667854100202355304774067999999999998299578478885231
Q gi|254780799|r 445 KPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 445 ~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
+++-.++.+==.+-|.|-.|||||-.+|+|.- | .|++=. |.++=+
T Consensus 17 ~~isl~i~~Gei~~iiGpNGaGKSTLl~~l~G--l---~~~~G~-I~~~G~ 61 (249)
T 2qi9_C 17 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAG--M---TSGKGS-IQFAGQ 61 (249)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTT--S---SCCEEE-EEETTE
T ss_pred CCEEEEECCCCEEEEECCCCCCHHHHHHHHHC--C---CCCCEE-EEECCE
T ss_conf 68888995898999998999819999999947--8---789669-999999
No 243
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=63.47 E-value=3.6 Score=19.30 Aligned_cols=153 Identities=17% Similarity=0.226 Sum_probs=71.8
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCC-----------CCHHHHCCCCCCHHHHHHHH
Q ss_conf 0235530477406799999999999829957847888523100111027-----------70343122334304566899
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYD-----------GIPNLLTPVVTNPQKAVTVL 523 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~-----------~iPHLl~pVvTd~~kA~~aL 523 (806)
--+-+-|-.|||||..+++|-- |+ +|++=+...=+=.+..++.+. =.||+ |=-...+.+|
T Consensus 25 e~~~iiGpsGsGKSTllr~i~G-l~---~p~~G~I~i~g~di~~~~~~~r~ig~vfQ~~~l~p~~-----TV~eNi~~~l 95 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG-IV---KPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHL-----SVYRNIAYGL 95 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT-SS---CCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTS-----CHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHC-CC---CCCCEEEEECCEECCCCCHHHCCCEEECCCCCCCCCC-----CHHHHHHHHH
T ss_conf 7999997999819999999972-99---9996299999999987658777711477865779999-----1999999997
Q ss_pred H-HHHHHHHHH-HHHHHHCCCCCHH--------HH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 9-999999999-9999870899689--------99-99999887447866775446776545432223322323469868
Q gi|254780799|r 524 K-WLVCEMEER-YQKMSKIGVRNID--------GF-NLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYI 592 (806)
Q Consensus 524 ~-w~V~EMe~R-Y~l~a~~~vRni~--------~y-N~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~i 592 (806)
+ |--.|+++| ++++...|+.++. |= -+|+.-|++ +-.=|-
T Consensus 96 ~~~~~~e~~~rv~e~l~~~~l~~~~~~~p~~LSGGqkQRvaiAra----------------------------L~~~P~- 146 (240)
T 2onk_A 96 RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARA----------------------------LVIQPR- 146 (240)
T ss_dssp TTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHH----------------------------HTTCCS-
T ss_pred HCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHH----------------------------HHCCCC-
T ss_conf 059988999999999997396756659954599999999999998----------------------------742898-
Q ss_pred EEEHHHH-HHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEE
Q ss_conf 7763446-88887321005889999998664142379999657775355435541102515876
Q gi|254780799|r 593 VVVIDEM-ADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQ 655 (806)
Q Consensus 593 vviiDEl-aDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~ 655 (806)
+++.||= +-|=.....++-+ -|.+..|.-|+-+|+.|+-+.. =+.+-.||.+-
T Consensus 147 illlDEPts~LD~~~~~~i~~---~l~~l~~~~g~tii~vTHd~~~-------a~~~~dri~vm 200 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLME---ELRFVQREFDVPILHVTHDLIE-------AAMLADEVAVM 200 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHH---HHHHHHHHHTCCEEEEESCHHH-------HHHHCSEEEEE
T ss_pred EEEECCCCCCCCHHHHHHHHH---HHHHHHHHHCCEEEEEECCHHH-------HHHHCCEEEEE
T ss_conf 688458623289789999999---9999999619969999599999-------99969999999
No 244
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=63.36 E-value=3.5 Score=19.34 Aligned_cols=36 Identities=11% Similarity=0.235 Sum_probs=26.1
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHH-HEEEEEECCC
Q ss_conf 0235530477406799999999999829957-8478885231
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPA-QCRLIMIDPK 495 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~-evkliliDPK 495 (806)
-|+||-|-.|+||+.+-++| ...++. +-.|+.||--
T Consensus 25 ~pvli~Ge~GtGK~~~A~~i-----H~~s~~~~~~fv~i~~~ 61 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYL-----HQFGRNAQGEFVYRELT 61 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHH-----HHSSTTTTSCCEEEECC
T ss_pred CCEEEECCCCCCHHHHHHHH-----HHHCCCCCCCCEEECCC
T ss_conf 94899899997879999999-----87376778984021021
No 245
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=63.35 E-value=4.2 Score=18.78 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=18.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHH
Q ss_conf 0235530477406799999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~ 476 (806)
-.+++-|.+|+|||-.+|.++-
T Consensus 9 ~Ki~viG~~~vGKSsli~~~~~ 30 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999999899598999999970
No 246
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=63.32 E-value=4.2 Score=18.78 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=30.2
Q ss_pred EEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHH
Q ss_conf 87763446888873210058899999986641423799996577753554355
Q gi|254780799|r 592 IVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTI 644 (806)
Q Consensus 592 ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~i 644 (806)
-++++||+..+- ..-+.....+.+.-+-.+.+++..+-.++++-..--|
T Consensus 101 ~~~iiDe~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i 149 (178)
T 1ye8_A 101 KVIIIDEIGKME----LFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEI 149 (178)
T ss_dssp CEEEECCCSTTG----GGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHH
T ss_pred CEEEECCCCCCH----HHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHH
T ss_conf 378721777731----4435667888888762681899996244889997564
No 247
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.70A {Thermus thermophilus HB8} PDB: 2d2f_A*
Probab=63.03 E-value=1.5 Score=22.22 Aligned_cols=59 Identities=25% Similarity=0.320 Sum_probs=33.7
Q ss_pred CCCCCEEEEEC----CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHH
Q ss_conf 66666678541----00202355304774067999999999998299578478885231001110
Q gi|254780799|r 441 SIEGKPIIADL----ARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSV 501 (806)
Q Consensus 441 dI~G~pvv~DL----akMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~ 501 (806)
...|++++-|+ .+==.+=+.|-.|||||..+|. ++-+.+.+|++=+..+=+=.+..++.
T Consensus 12 ~~~~~~vL~~isl~i~~Gei~~liG~nGaGKSTL~~~--i~G~~~~~~~~G~I~~~G~~i~~~~~ 74 (250)
T 2d2e_A 12 SIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKI--LAGDPEYTVERGEILLDGENILELSP 74 (250)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHH--HHTCTTCEEEEEEEEETTEECTTSCH
T ss_pred EECCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHH--HHCCCCCCCCCEEEEECCEECCCCCH
T ss_conf 9899998843176886997999988899899999999--85687788886599999999998999
No 248
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=63.01 E-value=3.4 Score=19.49 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=19.3
Q ss_pred CCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 02023553047740679999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI 475 (806)
|...++|.|-+|+|||--+|.+.
T Consensus 20 k~~kI~ivG~~nvGKSSLin~l~ 42 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLK 42 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTS
T ss_pred CEEEEEEECCCCCCHHHHHHHHH
T ss_conf 55799999999998999999997
No 249
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=62.84 E-value=3.4 Score=19.45 Aligned_cols=53 Identities=15% Similarity=0.342 Sum_probs=30.9
Q ss_pred HHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECH
Q ss_conf 999996598500014222001177899999999977986802-278872673171
Q gi|254780799|r 747 VDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISS 800 (806)
Q Consensus 747 ~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~ 800 (806)
...+.+ +-.++|-|-+++.+-=.-..|+|+.||++|+|--. +..-.|.+++.-
T Consensus 43 L~~i~~-~~~t~~~la~~~~~~~~tvs~~i~~L~~~Glv~r~~~~~D~R~~~i~L 96 (144)
T 3f3x_A 43 LKATSE-EPRSMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEI 96 (144)
T ss_dssp HHHHHH-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEE
T ss_pred HHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEE
T ss_conf 999991-996999999998978868999999999889844447788888457678
No 250
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus halodurans c-125} SCOP: c.37.1.25
Probab=62.83 E-value=3.7 Score=19.16 Aligned_cols=18 Identities=33% Similarity=0.652 Sum_probs=14.7
Q ss_pred EEEEECCCCHHHHHHHHH
Q ss_conf 355304774067999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~i 474 (806)
.+|+|..|||||-.-+.+
T Consensus 5 Iii~G~~GsGKTTla~~L 22 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRL 22 (189)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999899998989999999
No 251
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium LT2}
Probab=62.70 E-value=3.8 Score=19.13 Aligned_cols=46 Identities=30% Similarity=0.481 Sum_probs=29.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHH-------------HHHCCHHHEEEEEE-------C-CCHHHHHHC
Q ss_conf 3553047740679999999999-------------98299578478885-------2-310011102
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSL-------------LYRMTPAQCRLIMI-------D-PKMLELSVY 502 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~Sl-------------Lyk~~P~evklili-------D-PK~vEls~Y 502 (806)
-..+|..|.|||--||+++=.- .=|+|-...+|+.. | |=+=||...
T Consensus 218 sv~~G~SGVGKSSLiN~L~~~~~~~~tg~vS~~~~rGrHTTt~~~L~~l~~gg~iiDTPG~r~~~l~ 284 (358)
T 2rcn_A 218 SIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLW 284 (358)
T ss_dssp EEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCCCC
T ss_pred EEEECCCCCCHHHHHHHHCCHHHHHHHHCCCHHCCCCCCEECEEEEEEECCCCEEEECCCCCCCCCC
T ss_conf 9998888765889997744457665543000210256540133778981899789858866656867
No 252
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=62.68 E-value=5.8 Score=17.73 Aligned_cols=47 Identities=6% Similarity=0.164 Sum_probs=39.4
Q ss_pred HHHHHHHHCCCEEEEHHHHHHC----CCHHHHHHHHHHHHHCCCCCHHHCC
Q ss_conf 9999999659850001422200----1177899999999977986802278
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLG----IGYNRAASIIENMEEKGVIGPASST 791 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~----igy~raar~~~~~e~~giv~~~~g~ 791 (806)
+..+++.+.+.+++.-|+..|. +.|+--..+++.|+++|+|.-..-.
T Consensus 39 ~VM~iLW~~~~~t~~eI~~~l~~~~~~~~sTv~T~L~RL~~KG~l~~~k~G 89 (99)
T 2k4b_A 39 IVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKEG 89 (99)
T ss_dssp HHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEET
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 999999907995899999998501386556699999999988987999529
No 253
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphoprotein, RNA-binding, ATP-binding; 3.50A {Homo sapiens}
Probab=62.52 E-value=2.9 Score=20.00 Aligned_cols=51 Identities=20% Similarity=0.284 Sum_probs=25.0
Q ss_pred CCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCC
Q ss_conf 234698687763446888873210058899999986641423799996577753554
Q gi|254780799|r 585 DFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVIT 641 (806)
Q Consensus 585 ~~~~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvit 641 (806)
.+..+-| +|+||. |.+..- .....+.++.... ......++.+....-++..
T Consensus 180 ~~~~~~~--~ViDEa-~~~~~~--~f~~~~~~i~~~~-~~~~q~~~~SAT~~~~~~~ 230 (414)
T 3eiq_A 180 SPKYIKM--FVLDEA-DEMLSR--GFKDQIYDIFQKL-NSNTQVVLLSATMPSDVLE 230 (414)
T ss_dssp CSTTCCE--EEECSH-HHHHHT--TTHHHHHHHHTTS-CTTCEEEEECSCCCHHHHH
T ss_pred CCCCEEE--EEEEEE-EECCCC--CHHHHHHHHHHHC-CCCCEEEEEECCCCHHHHH
T ss_conf 3244146--784334-100036--7189999997407-7553257764268777999
No 254
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=62.52 E-value=4.4 Score=18.65 Aligned_cols=57 Identities=9% Similarity=0.227 Sum_probs=42.5
Q ss_pred HHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECH
Q ss_conf 999999996598500014222001177899999999977986802-278872673171
Q gi|254780799|r 744 KQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISS 800 (806)
Q Consensus 744 ~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~ 800 (806)
-.++.++...+..|++-|-+++.+--+.+.|+++.||++|+|--. +....|.+.+.-
T Consensus 36 ~~vL~~i~~~~~~t~~ela~~~~~~~~~vs~~v~~L~~~gli~~~~~~~DkR~~~i~l 93 (145)
T 2a61_A 36 FDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVI 93 (145)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEE
T ss_conf 9999999877998999999998979878999999985289379967588988678788
No 255
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=62.49 E-value=3.4 Score=19.49 Aligned_cols=20 Identities=35% Similarity=0.772 Sum_probs=18.3
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 23553047740679999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI 475 (806)
|+|+-|-+|.|||..+.++-
T Consensus 48 ~vLl~GppGtGKT~lar~la 67 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLA 67 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHH
T ss_conf 58998999852999999999
No 256
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=62.49 E-value=5.8 Score=17.71 Aligned_cols=28 Identities=36% Similarity=0.532 Sum_probs=19.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 2355304774067999999999998299
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMT 483 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~ 483 (806)
++++.--|||||+.|---=|+..+.+..
T Consensus 93 dviv~A~TGSGKTlay~lpil~~~~~~~ 120 (262)
T 3ly5_A 93 DLLAAAKTGSGKTLAFLIPAVELIVKLR 120 (262)
T ss_dssp CCEECCCTTSCHHHHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 9667889999817999999998776512
No 257
>2wv9_A Flavivirin protease NS2B regulatory subunit, flavivirin protease NS3 catalytic subunit...; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=62.32 E-value=2.1 Score=21.09 Aligned_cols=103 Identities=22% Similarity=0.192 Sum_probs=53.5
Q ss_pred CEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHCCCC
Q ss_conf 86877634468888732100588999999866414237999965777535543554110251587645866421233886
Q gi|254780799|r 590 PYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQ 669 (806)
Q Consensus 590 p~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtild~~ 669 (806)
-|=+||+||.-- | . ..--..+..+.+.++.-...+|+.|=.|...+. -+...|+|-.. +...+..+... .
T Consensus 332 ~~s~IIIDEaH~-~-d--~~~~~~~~~l~~~~~~~~~klIlmSATppg~~~-~~~~~~~~v~~---~~~~ip~~~~~--~ 401 (673)
T 2wv9_A 332 NYNLFVMDEAHF-T-D--PASIAARGYIATRVEAGEAAAIFMTATPPGTSD-PFPDTNSPVHD---VSSEIPDRAWS--S 401 (673)
T ss_dssp CCSEEEEESTTC-C-C--HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC-SSCCCSSCEEE---EECCCCSSCCS--S
T ss_pred CCCEEEEECCCC-C-C--CCCCHHHHHHHHHHCCCCCCEEEECCCCCCCEE-EECCCCCCCEE---EEEECCHHHHH--H
T ss_conf 887999949638-6-7--143767899998622876528994168997468-75575665337---99973677999--9
Q ss_pred CHHHHC-CCCCEE-EECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
Q ss_conf 457865-887547-7368983258883348988999999999712897
Q gi|254780799|r 670 GAEQLL-GQGDML-YMTGGGRVQRIHGPFVSDIEVEKVVSHLKTQGEA 715 (806)
Q Consensus 670 gae~Ll-g~gdml-~~~~~~~~~r~~g~~v~~~ev~~v~~~~~~q~~~ 715 (806)
+.+.+. -.||.| |+| +-+|++++.+.+++++..
T Consensus 402 ~~~~I~e~~G~iLVFv~-------------s~~eie~la~~L~~~g~~ 436 (673)
T 2wv9_A 402 GFEWITDYAGKTVWFVA-------------SVKMSNEIAQCLQRAGKR 436 (673)
T ss_dssp CCHHHHSCCSCEEEECS-------------SHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHCCCCEEEEEC-------------CHHHHHHHHHHHHHCCCE
T ss_conf 99999747999999939-------------989999999999878984
No 258
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20
Probab=62.19 E-value=3 Score=19.92 Aligned_cols=46 Identities=9% Similarity=0.138 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 770389999999965985000142220011778999999999779868022
Q gi|254780799|r 739 ADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPAS 789 (806)
Q Consensus 739 ~d~l~~~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~ 789 (806)
.|.......+...+.+..|.--. +.--|+||-+=.|+.+--|.+.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~S~Ra~-----~~llr~Ara~A~L~gr~~V~~~d 314 (350)
T 1g8p_A 269 PNTALYDCAALCIALGSDGLRGE-----LTLLRSARALAALEGATAVGRDH 314 (350)
T ss_dssp CHHHHHHHHHHHHHSSSCSHHHH-----HHHHHHHHHHHHHTTCSBCCHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHH-----HHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 88999999999998089883799-----99999999999977999989999
No 259
>3kqn_A Serine protease/ntpase/helicase NS3; helicase-substrate transition-state complex, HCV, NS3 protein, helicase, DNA-binding; HET: ADP; 2.05A {Hepatitis c virus} PDB: 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 2zjo_A* 8ohm_A 1a1v_A* 2f55_A 1hei_A 1jr6_A 1onb_A
Probab=62.18 E-value=3.5 Score=19.34 Aligned_cols=103 Identities=19% Similarity=0.199 Sum_probs=47.4
Q ss_pred EEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHH-HCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHCCCC
Q ss_conf 68776344688887321005889999998664-14237999965777535543554110251587645866421233886
Q gi|254780799|r 591 YIVVVIDEMADLMMVARKDIESAVQRLAQMAR-ASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQ 669 (806)
Q Consensus 591 ~ivviiDElaDlmm~~~~~ve~~i~rlaq~ar-a~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtild~~ 669 (806)
+=+|||||. |.| ..+-...+..+...++ ..-..++.||-.|...+. ++.|....+.......-.--....
T Consensus 96 ~~~VVIDEa-H~~---d~~~~~~l~~i~~~~~~~~~~~li~aSat~~~~~~-----~~~~~i~~~~l~~~~~i~~~~~~~ 166 (437)
T 3kqn_A 96 YDIIICDEC-HST---DSTTILGIGTVLDQAETAGARLVVLATATPPGSVT-----VPHPNIEEVALSSTGEIPFYGKAI 166 (437)
T ss_dssp CSEEEETTT-TCC---SHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCCC-----CCCTTEEEEECCSCSSEEETTEEE
T ss_pred CCEEEEEEE-EEC---CCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHC-----CCCCCEEECCCCCCEEEHHHHHHH
T ss_conf 464899876-523---71200346689875625743389870467630210-----566515640355531321334124
Q ss_pred CHHHHCCCCCEEEECCCCCEEEEEECCC-CHHHHHHHHHHHHHCCCCC
Q ss_conf 4578658875477368983258883348-9889999999997128974
Q gi|254780799|r 670 GAEQLLGQGDMLYMTGGGRVQRIHGPFV-SDIEVEKVVSHLKTQGEAK 716 (806)
Q Consensus 670 gae~Llg~gdml~~~~~~~~~r~~g~~v-~~~ev~~v~~~~~~q~~~~ 716 (806)
-.|. +-.|+.+ -|+ +-.|++++...+++.+...
T Consensus 167 ~~e~-~k~gk~l-------------VFv~Sk~eve~La~~L~~~g~~v 200 (437)
T 3kqn_A 167 PIET-IKGGRHL-------------IFCHSKKKCDELAAKLSGLGLNA 200 (437)
T ss_dssp CGGG-TSSSEEE-------------EECSSHHHHHHHHHHHHHTTCCE
T ss_pred HHHH-HCCCCEE-------------EECCCHHHHHHHHHHHHHCCCCE
T ss_conf 5644-2468889-------------99598999999999998589949
No 260
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome dynamics; HET: GDP; 2.5A {Homo sapiens}
Probab=61.89 E-value=2.1 Score=21.09 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=33.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHH---HC--CHHHEEEEEECCCHHHHHHCC
Q ss_conf 2355304774067999999999998---29--957847888523100111027
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLY---RM--TPAQCRLIMIDPKMLELSVYD 503 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLy---k~--~P~evkliliDPK~vEls~Y~ 503 (806)
-++|-|..|+|||--+|.++..--- .. .....+.+.++.+.+.+.+++
T Consensus 36 KI~vvG~~~vGKTSLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwD 88 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWD 88 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEE
T ss_conf 99999999978999999996299888768830468999999899089997750
No 261
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=61.86 E-value=3.8 Score=19.09 Aligned_cols=143 Identities=18% Similarity=0.268 Sum_probs=68.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHC-CHHH---------------------EEEEEECCCHHHHHHCCCCHHHHC
Q ss_conf 020235530477406799999999999829-9578---------------------478885231001110277034312
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRM-TPAQ---------------------CRLIMIDPKMLELSVYDGIPNLLT 510 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~-~P~e---------------------vkliliDPK~vEls~Y~~iPHLl~ 510 (806)
+==.+-|-|.+|||||--++ +|.+. .|.+ +-++.=||....-++++.|. +-.
T Consensus 79 ~Ge~vaIvG~sGsGKSTLl~-----ll~gl~~p~~G~I~i~g~~~~~~~~~~lr~~i~~V~Q~~~lf~~Ti~eNi~-~~~ 152 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILR-----LLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIR-YGR 152 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHH-----HHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHH-TTS
T ss_pred CCCEEEEECCCCCHHHHHHH-----HHHCCCCCCCCEEEECCEECHHHCHHHHHHHEEEECCCCCCCCCCHHHHHH-CCC
T ss_conf 99999999999986999999-----996566578876967778304426999985358976467435563899850-455
Q ss_pred CCCCCHHHHHHHHHHH-----HHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2334304566899999-----9999999999987089968999-999998874478667754467765454322233223
Q gi|254780799|r 511 PVVTNPQKAVTVLKWL-----VCEMEERYQKMSKIGVRNIDGF-NLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHF 584 (806)
Q Consensus 511 pVvTd~~kA~~aL~w~-----V~EMe~RY~l~a~~~vRni~~y-N~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (806)
|-.++. +...+++++ +..+...|+-.-..+-.|+.|= -+|+.-|++-
T Consensus 153 ~~~~~~-~~~~~~~~~~l~~~i~~lp~gl~t~i~~~g~~LSGGQ~QRlaiARal-------------------------- 205 (306)
T 3nh6_A 153 VTAGND-EVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTI-------------------------- 205 (306)
T ss_dssp TTCCHH-HHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHH--------------------------
T ss_pred CCCCHH-HHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH--------------------------
T ss_conf 557888-88889999999999985710121254078887899999999999986--------------------------
Q ss_pred CCCCCCEEEEEHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 23469868776344-68888732100588999999866414237999965777
Q gi|254780799|r 585 DFQHMPYIVVVIDE-MADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 585 ~~~~lp~ivviiDE-laDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
-.=|- ++|.|| .+-|=....++|.+.|.++.+ |.-.|+.|.|++
T Consensus 206 --~~~p~-ililDEpTs~LD~~t~~~i~~~l~~l~~-----~~TvI~itH~l~ 250 (306)
T 3nh6_A 206 --LKAPG-IILLDEATSALDTSNERAIQASLAKVCA-----NRTTIVVAHRLS 250 (306)
T ss_dssp --HHCCS-EEEEECCSSCCCHHHHHHHHHHHHHHHT-----TSEEEEECCSHH
T ss_pred --CCCCC-EEEEECCCCCCCHHHHHHHHHHHHHHHC-----CCEEEEEECCHH
T ss_conf --55999-9999698657898999999999999858-----998999927999
No 262
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=61.78 E-value=2 Score=21.12 Aligned_cols=11 Identities=27% Similarity=0.760 Sum_probs=8.8
Q ss_pred CCCCCEEEECC
Q ss_conf 58875477368
Q gi|254780799|r 675 LGQGDMLYMTG 685 (806)
Q Consensus 675 lg~gdml~~~~ 685 (806)
|.+|||||+-|
T Consensus 69 LkHGdml~L~~ 79 (80)
T 2pjh_A 69 IKHGDLLFLFP 79 (80)
T ss_dssp CCTTCCEEC--
T ss_pred CCCCCEEEECC
T ss_conf 88767899726
No 263
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like hydrolase; 2.45A {Bacillus subtilis subsp}
Probab=61.75 E-value=6.8 Score=17.20 Aligned_cols=42 Identities=12% Similarity=0.061 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCE
Q ss_conf 588999999866414237999965777535543554110251
Q gi|254780799|r 610 IESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTR 651 (806)
Q Consensus 610 ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~r 651 (806)
++....-+.|.+|..||+.++||=||--.+.--+-+.+++..
T Consensus 46 ~~~l~~~l~~~~~~~gi~~~iaTGR~~~~~~~~~~~~~~~~~ 87 (289)
T 3gyg_A 46 IYELEDYLEQKSKDGELIIGWVTGSSIESILDKMGRGKFRYF 87 (289)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHCCCCC
T ss_conf 999999999999817988999889986778999998488767
No 264
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1}
Probab=61.73 E-value=6.6 Score=17.29 Aligned_cols=53 Identities=13% Similarity=0.364 Sum_probs=27.2
Q ss_pred HHHHHHHCCC-EEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEE
Q ss_conf 9999996598-500014222001177899999999977986802-2788726731
Q gi|254780799|r 746 AVDIVLRDNK-ASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILI 798 (806)
Q Consensus 746 a~~~v~~~~~-~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~ 798 (806)
++.++...+. .+.+=|-+++.+--.-..|+++.||++|+|--. +..-.|.+++
T Consensus 44 iL~~l~~~~~~~t~~ela~~l~~~~~~vsr~v~~L~~~glI~r~~~~~D~R~~~l 98 (150)
T 3fm5_A 44 VLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLI 98 (150)
T ss_dssp HHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------C
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHH
T ss_conf 9999998598989999999978878778899998976476466018665661243
No 265
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=61.70 E-value=6 Score=17.60 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCE-EEEEECCCCHHHHHHHHHHHH
Q ss_conf 6667854100202-355304774067999999999
Q gi|254780799|r 444 GKPIIADLARMPH-LLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 444 G~pvv~DLakMPH-LLIAGtTGSGKSV~iN~iI~S 477 (806)
-+-....-.| |- .-|+|.+|||||-.-+.+--.
T Consensus 15 ~~~~~~~~~k-P~IIgI~G~~gSGKSTla~~L~~~ 48 (245)
T 2jeo_A 15 TENLYFQSMR-PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp --------CC-SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHCCCC-CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 6688628999-589998898988899999999998
No 266
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=61.44 E-value=4.6 Score=18.48 Aligned_cols=20 Identities=20% Similarity=0.526 Sum_probs=17.2
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 23553047740679999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI 475 (806)
+++|-|..|||||--||.+.
T Consensus 18 kI~vvG~~~~GKTsLi~~l~ 37 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLA 37 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999998999999995
No 267
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=61.41 E-value=6.9 Score=17.17 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=40.3
Q ss_pred HHHHHHHHC-CCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECHH
Q ss_conf 999999965-9850001422200117789999999997798680227-88726731712
Q gi|254780799|r 745 QAVDIVLRD-NKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISSM 801 (806)
Q Consensus 745 ~a~~~v~~~-~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~~ 801 (806)
.++..+... +..+.+-|-+++.+-..-..|+++.||++|+|--... ...|.+++.-.
T Consensus 39 ~vL~~i~~~~g~~t~~ela~~~~~~~~tvs~~l~~L~~~glv~r~~~~~DrR~~~i~lT 97 (147)
T 2hr3_A 39 VVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLS 97 (147)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEEC
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEC
T ss_conf 99999997699989999999989798799999999986796687357887762002478
No 268
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus}
Probab=61.39 E-value=6.3 Score=17.45 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=34.0
Q ss_pred HHHHHHHCCC--EEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECHH
Q ss_conf 9999996598--50001422200117789999999997798680227-88726731712
Q gi|254780799|r 746 AVDIVLRDNK--ASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISSM 801 (806)
Q Consensus 746 a~~~v~~~~~--~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~~ 801 (806)
+..++...+. .|.+-|-+++.+--...+|+++.||++|+|--... .-.|.+++.-.
T Consensus 36 vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~v~~L~~~glv~r~~~~~D~R~~~l~LT 94 (139)
T 3eco_A 36 TLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLT 94 (139)
T ss_dssp HHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEEC
T ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEC
T ss_conf 99999835999969999999989688789999999997889785167899884675789
No 269
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=61.30 E-value=6.9 Score=17.14 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=10.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 446888873210058899999986
Q gi|254780799|r 597 DEMADLMMVARKDIESAVQRLAQM 620 (806)
Q Consensus 597 DElaDlmm~~~~~ve~~i~rlaq~ 620 (806)
-|+|.-.=++...|-.-|.||-+.
T Consensus 21 ~eia~~lg~s~~tv~~Ri~~L~~~ 44 (150)
T 2pn6_A 21 DEIAREIRIPKATLSYRIKKLEKD 44 (150)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 999999893999999999999968
No 270
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 3ng1_A 1ffh_A 2ng1_A*
Probab=61.25 E-value=7 Score=17.14 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=41.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH----HHHHCCCCHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 35530477406799999999999829957847888523100----111027703431223343045668999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML----ELSVYDGIPNLLTPVVTNPQKAVTVLKWLV 527 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v----Els~Y~~iPHLl~pVvTd~~kA~~aL~w~V 527 (806)
.++.|.||+||+-.+-=+- ..|+.....|-++-.|.-+. -|..|..+...-.=++-++...+.....+.
T Consensus 101 ~~lvG~~G~GKTTt~aKLA--~~~~~~g~kv~li~~Dt~R~~A~eQL~~~a~~~~v~~~~~~~~~~~~~~~~~~~ 173 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLA--LYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp EEEECCTTTTHHHHHHHHH--HHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred EEEECCCCCCCEEHHHHHH--HHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH
T ss_conf 9996778898521199999--999877984457741455533899999999864963895068876689999999
No 271
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=61.22 E-value=4.5 Score=18.58 Aligned_cols=153 Identities=21% Similarity=0.209 Sum_probs=71.4
Q ss_pred EECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCC---------------H----HHEEEEEECCCHHHHHHCCCCHHHH
Q ss_conf 54100202355304774067999999999998299---------------5----7847888523100111027703431
Q gi|254780799|r 449 ADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMT---------------P----AQCRLIMIDPKMLELSVYDGIPNLL 509 (806)
Q Consensus 449 ~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~---------------P----~evkliliDPK~vEls~Y~~iPHLl 509 (806)
.++.+==.+-|-|.+|||||-.++.|.- ||+.+ + +.+-++.=||.....++++.|---.
T Consensus 40 l~i~~Ge~iaIvG~sGsGKSTLl~ll~g--l~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~g~ 117 (271)
T 2ixe_A 40 FTLYPGKVTALVGPNGSGKSTVAALLQN--LYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL 117 (271)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTT--SSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHHTTC
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC--CCCCCCCEEEECCEECCCCCHHHHHHHEEEEECCCEECCCCHHHHHHCCC
T ss_conf 9985999999999999869999999976--77589888999999987399999974178981256663756999974345
Q ss_pred CCCCCCHHHHHHHHHH----HHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2233430456689999----9999999999998708996899-9999998874478667754467765454322233223
Q gi|254780799|r 510 TPVVTNPQKAVTVLKW----LVCEMEERYQKMSKIGVRNIDG-FNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHF 584 (806)
Q Consensus 510 ~pVvTd~~kA~~aL~w----~V~EMe~RY~l~a~~~vRni~~-yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (806)
.+..++.......... .+..+...|+-.-..+-.++.| =-+|+.-|++-
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~i~~~g~~LSGGQ~QRiaiARAl-------------------------- 171 (271)
T 2ixe_A 118 TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARAL-------------------------- 171 (271)
T ss_dssp SSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHH--------------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHH--------------------------
T ss_conf 667788999999999856999985612100343188987898999999999888--------------------------
Q ss_pred CCCCCCEEEEEHHHH-HHHHHHCCCHHHHHHHH-HHHHHHHCCEEEEEEECCCC
Q ss_conf 234698687763446-88887321005889999-99866414237999965777
Q gi|254780799|r 585 DFQHMPYIVVVIDEM-ADLMMVARKDIESAVQR-LAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 585 ~~~~lp~ivviiDEl-aDlmm~~~~~ve~~i~r-laq~ara~GiHli~aTqrPs 636 (806)
-.=|- |+|.||- +-|= .+-|..|.+ |.+..+..|.-+|+.|.|++
T Consensus 172 --~~~p~-ililDEpTs~LD----~~t~~~i~~~l~~~~~~~~~Tvi~itH~l~ 218 (271)
T 2ixe_A 172 --IRKPR-LLILDNATSALD----AGNQLRVQRLLYESPEWASRTVLLITQQLS 218 (271)
T ss_dssp --TTCCS-EEEEESTTTTCC----HHHHHHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred --HHCCC-EEEEECCCCCCC----HHHHHHHHHHHHHHHHCCCCEEEEECCCHH
T ss_conf --62899-999948765679----889999999999987607989999878999
No 272
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=61.09 E-value=7 Score=17.12 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=6.1
Q ss_pred HHHHHHHCCCC
Q ss_conf 99997424863
Q gi|254780799|r 339 LKSVLSDFGIQ 349 (806)
Q Consensus 339 LE~tL~dFGVe 349 (806)
++..-+.||+.
T Consensus 85 i~~l~~~f~lh 95 (363)
T 2iub_A 85 VQRVGEFFGIH 95 (363)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHCCCC
T ss_conf 99999975959
No 273
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, infectious diseases, center for structural genomics of infectious diseases; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=61.04 E-value=5.5 Score=17.89 Aligned_cols=41 Identities=27% Similarity=0.393 Sum_probs=33.1
Q ss_pred CCCCCCCCEEEEECCCCCEEEEE--ECCCCHHHHHHHHHHHHH
Q ss_conf 04566666678541002023553--047740679999999999
Q gi|254780799|r 438 LGKSIEGKPIIADLARMPHLLIA--GTTGSGKSVAINTMILSL 478 (806)
Q Consensus 438 LGKdI~G~pvv~DLakMPHLLIA--GtTGSGKSV~iN~iI~Sl 478 (806)
=|-|.+++....-..-|..-+|+ |-=|||||--++.+--.|
T Consensus 9 ~~~~~~~~~~~~~~~~m~~kfIvieG~dGsGKSTq~~~L~~~L 51 (236)
T 3lv8_A 9 SGVDLGTENLYFQSNAMNAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp -----------------CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 5565541654214246678989998999884999999999999
No 274
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=60.98 E-value=4.6 Score=18.47 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=17.7
Q ss_pred CEEEEEECCCCHHHHHHHHH
Q ss_conf 02355304774067999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~i 474 (806)
..+|+-|..|||||--+|.+
T Consensus 26 ~KIlilG~~~sGKTSll~~l 45 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHML 45 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
T ss_conf 18999999999889999999
No 275
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=60.81 E-value=4.9 Score=18.24 Aligned_cols=21 Identities=43% Similarity=0.725 Sum_probs=14.9
Q ss_pred CCCCEEE-EEECCCCHHHHHHH
Q ss_conf 0020235-53047740679999
Q gi|254780799|r 452 ARMPHLL-IAGTTGSGKSVAIN 472 (806)
Q Consensus 452 akMPHLL-IAGtTGSGKSV~iN 472 (806)
+|=|=+. |+|..|||||-..+
T Consensus 5 ~k~P~iIgItG~~GSGKsTva~ 26 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAA 26 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHH
T ss_conf 8884899998998776999999
No 276
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcription; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=60.66 E-value=2.6 Score=20.38 Aligned_cols=48 Identities=25% Similarity=0.352 Sum_probs=35.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHH
Q ss_conf 0202355304774067999999999998299578478885231001110
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSV 501 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~ 501 (806)
+-|..||.|.+.||||-....++--+| |.....+=++=.||..=|+++
T Consensus 137 ~GPRVLV~Gp~~sGKSTl~r~L~Nyal-r~~g~~p~~vDlDpGQ~~~s~ 184 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYAL-KFNAYQPLYINLDPQQPIFTV 184 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTH-HHHCCCCEEEECCTTSCSSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCCCC
T ss_conf 598899989988798999999999998-526972399966689877679
No 277
>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=60.50 E-value=6.6 Score=17.29 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 3256654578999999742
Q gi|254780799|r 327 FSPKVMQNNACTLKSVLSD 345 (806)
Q Consensus 327 ~s~eeL~~nA~lLE~tL~d 345 (806)
.+.+++++-.+.|+..+.+
T Consensus 124 ~~~ee~~~l~~~L~~l~~~ 142 (147)
T 1z91_A 124 QSGEDLKQLKSALYTLLET 142 (147)
T ss_dssp CCTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
T ss_conf 6999999999999999999
No 278
>3enu_A Nitrollin, putative uncharacterized protein; betagamma crystallin, structural protein; 1.86A {Nitrosospira multiformis} PDB: 3ent_A
Probab=60.40 E-value=2.2 Score=20.93 Aligned_cols=23 Identities=43% Similarity=0.853 Sum_probs=18.1
Q ss_pred CCCEEEECCCCCEEEEEECCCCH
Q ss_conf 87547736898325888334898
Q gi|254780799|r 677 QGDMLYMTGGGRVQRIHGPFVSD 699 (806)
Q Consensus 677 ~gdml~~~~~~~~~r~~g~~v~~ 699 (806)
+|||||+.+-...+|+-|+|--|
T Consensus 34 QGD~L~L~GPA~~~~m~~~~~~~ 56 (114)
T 3enu_A 34 QGDSLFLSGPATLPRLIGPFGYD 56 (114)
T ss_dssp CSCEEEEESSEEESSSEETTTEE
T ss_pred CCCEEEEECCHHHHHCCCCHHHH
T ss_conf 67468987746632202602456
No 279
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=60.37 E-value=2.5 Score=20.42 Aligned_cols=15 Identities=20% Similarity=0.592 Sum_probs=12.1
Q ss_pred EEEEECCCCHHHHHH
Q ss_conf 355304774067999
Q gi|254780799|r 457 LLIAGTTGSGKSVAI 471 (806)
Q Consensus 457 LLIAGtTGSGKSV~i 471 (806)
+||...|||||+.|-
T Consensus 77 vlv~apTGsGKTl~f 91 (410)
T 2j0s_A 77 VIAQSQSGTGKTATF 91 (410)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCHHHHHH
T ss_conf 899899983689999
No 280
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein LOLD; structural genomics, NPPSFA; 1.70A {Aquifex aeolicus VF5} PDB: 2pcl_A
Probab=60.30 E-value=7.2 Score=17.02 Aligned_cols=149 Identities=20% Similarity=0.302 Sum_probs=73.7
Q ss_pred EEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEE-------------------------EEECCCHH-HHH
Q ss_conf 7854100202355304774067999999999998299578478-------------------------88523100-111
Q gi|254780799|r 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRL-------------------------IMIDPKML-ELS 500 (806)
Q Consensus 447 vv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkl-------------------------iliDPK~v-Els 500 (806)
+-.++.+=-.+-|-|-.|||||..+| +|.-| + .|+.=.. |.=||... +|+
T Consensus 23 vsl~i~~Ge~~~iiGpsGsGKSTLl~-~i~gl-~--~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~vfQ~~~L~~~lt 98 (224)
T 2pcj_A 23 ISLSVKKGEFVSIIGASGSGKSTLLY-ILGLL-D--APTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELT 98 (224)
T ss_dssp EEEEEETTCEEEEEECTTSCHHHHHH-HHTTS-S--CCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSC
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHH-HHHHC-C--CCCCCEEEECCEECCCCCHHHHHHHHHCCEEEECCCCCCCCCCC
T ss_conf 16798599899999999984999999-99717-8--99996799999998879989999986374778878665478981
Q ss_pred HCCCCHHHHCCCCCCHHHHHHHHH---HHHHHHHHHHH-HHHHCC--------CCCHHHHH-HHHHHHHHCCCCCCCCCC
Q ss_conf 027703431223343045668999---99999999999-998708--------99689999-999988744786677544
Q gi|254780799|r 501 VYDGIPNLLTPVVTNPQKAVTVLK---WLVCEMEERYQ-KMSKIG--------VRNIDGFN-LKVAQYHNTGKKFNRTVQ 567 (806)
Q Consensus 501 ~Y~~iPHLl~pVvTd~~kA~~aL~---w~V~EMe~RY~-l~a~~~--------vRni~~yN-~k~~~~~~~~~~~~~~~~ 567 (806)
+|+.| +..|+ +--+|+++|.+ ++...| +.++.|=. +|+.-|++-
T Consensus 99 v~eNi--------------~~~l~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~p~~LSGGq~QRVaIARaL--------- 155 (224)
T 2pcj_A 99 ALENV--------------IVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARAL--------- 155 (224)
T ss_dssp HHHHH--------------HHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHT---------
T ss_pred HHHHH--------------HHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHH---------
T ss_conf 99999--------------6799884999999999999999877996676189500898999999999999---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHH-HHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHH
Q ss_conf 67765454322233223234698687763446-88887321005889999998664142379999657775355435541
Q gi|254780799|r 568 TGFDRKTGEAIYETEHFDFQHMPYIVVVIDEM-ADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKA 646 (806)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~lp~ivviiDEl-aDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ika 646 (806)
-.=|- +++.||= +-|=-.+..+|-+.+..|.+ .|+-+|++|..+. + |
T Consensus 156 -------------------~~~P~-lll~DEPts~LD~~~~~~i~~ll~~l~~----~g~tvi~vTHd~~--~------~ 203 (224)
T 2pcj_A 156 -------------------ANEPI-LLFADEPTGNLDSANTKRVMDIFLKINE----GGTSIVMVTHERE--L------A 203 (224)
T ss_dssp -------------------TTCCS-EEEEESTTTTCCHHHHHHHHHHHHHHHH----TTCEEEEECSCHH--H------H
T ss_pred -------------------HCCCC-EEEEECCCCCCCHHHHHHHHHHHHHHHH----CCCEEEEECCCHH--H------H
T ss_conf -------------------73999-9998088766799999999999999996----0998999897799--9------9
Q ss_pred CCCCEEEE
Q ss_conf 10251587
Q gi|254780799|r 647 NFPTRISF 654 (806)
Q Consensus 647 n~p~riaf 654 (806)
.+-.|+..
T Consensus 204 ~~~drv~~ 211 (224)
T 2pcj_A 204 ELTHRTLE 211 (224)
T ss_dssp TTSSEEEE
T ss_pred HHCCEEEE
T ss_conf 85998999
No 281
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=60.21 E-value=3.2 Score=19.65 Aligned_cols=40 Identities=13% Similarity=0.360 Sum_probs=17.9
Q ss_pred HHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 9999996598500014222001177899999999977986
Q gi|254780799|r 746 AVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785 (806)
Q Consensus 746 a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv 785 (806)
++.++...+..|.+-|.+++.+--.-..|+++.||++|+|
T Consensus 48 iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~v~~L~~~Glv 87 (155)
T 3cdh_A 48 VLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLV 87 (155)
T ss_dssp HHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
T ss_conf 9999985799699999999896998899999999968977
No 282
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=60.13 E-value=4.8 Score=18.33 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=17.3
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 23553047740679999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI 475 (806)
-..+.|.+|+|||--||++.
T Consensus 9 ~I~lvG~~~vGKSSLin~l~ 28 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999999987999999996
No 283
>2yz2_A Putative ABC transporter ATP-binding protein TM_0222; cobalt transport, hydrolase, inner membrane, membrane, nucleotide- binding; 2.30A {Thermotoga maritima MSB8}
Probab=60.03 E-value=7.3 Score=16.99 Aligned_cols=45 Identities=29% Similarity=0.433 Sum_probs=28.6
Q ss_pred EEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCH
Q ss_conf 78541002023553047740679999999999982995784788852310
Q gi|254780799|r 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKM 496 (806)
Q Consensus 447 vv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~ 496 (806)
+-.++.+==.+.|-|..|||||-.++.| +.+ + +|+.=. |++|-+.
T Consensus 26 isl~i~~Ge~~~iiG~nGaGKSTLlk~i-~Gl-~--~p~~G~-I~~~G~~ 70 (266)
T 2yz2_A 26 VSLVINEGECLLVAGNTGSGKSTLLQIV-AGL-I--EPTSGD-VLYDGER 70 (266)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHH-TTS-S--CCSEEE-EEETTEE
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHH-HCC-C--CCCCEE-EEECCEE
T ss_conf 1678869989999899999999999999-658-8--898318-9999998
No 284
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=59.98 E-value=3.3 Score=19.58 Aligned_cols=79 Identities=27% Similarity=0.387 Sum_probs=45.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHHH------------HHCCHHHEEEEEEC--------CCHHHHHHC----CCCHHHH---
Q ss_conf 35530477406799999999999------------82995784788852--------310011102----7703431---
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLL------------YRMTPAQCRLIMID--------PKMLELSVY----DGIPNLL--- 509 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlL------------yk~~P~evkliliD--------PK~vEls~Y----~~iPHLl--- 509 (806)
...+|..|.|||--||+++-.+- =|||-...+|+..+ |=+=||.+. ++|.|..
T Consensus 172 sv~~G~SGVGKSSLiN~L~~~~~~~t~~is~~~~rGrHTTt~~~l~~l~~gg~iiDTPG~r~~~l~~~~~~~l~~~F~e~ 251 (301)
T 1u0l_A 172 STMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYFKEF 251 (301)
T ss_dssp EEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGSTTS
T ss_pred EEEECCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCEECCCEEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99994798768889752386222045525333289853412024689469989996898665677779989999850774
Q ss_pred ---------CCCCCCHHHHHHHHHHHHHH---HHHHHHHHH
Q ss_conf ---------22334304566899999999---999999998
Q gi|254780799|r 510 ---------TPVVTNPQKAVTVLKWLVCE---MEERYQKMS 538 (806)
Q Consensus 510 ---------~pVvTd~~kA~~aL~w~V~E---Me~RY~l~a 538 (806)
+--..+|.=|+. -+|.+ -++||+-+-
T Consensus 252 ~~~~CrF~dC~H~~EPgCaV~---~Ave~g~I~~~Ry~~Y~ 289 (301)
T 1u0l_A 252 GDKQCFFSDCNHVDEPECGVK---EAVENGEIAESRYENYV 289 (301)
T ss_dssp SSCCCSSTTCCSSSCSSCHHH---HHHHHTSSCHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHH---HHHHCCCCCHHHHHHHH
T ss_conf 557599977989989985799---99986998899999999
No 285
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=59.81 E-value=7.3 Score=16.96 Aligned_cols=55 Identities=13% Similarity=0.222 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCC-----CCCCH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999982995784788852310011102770343122-----33430-4566899999999999999998
Q gi|254780799|r 471 INTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTP-----VVTNP-QKAVTVLKWLVCEMEERYQKMS 538 (806)
Q Consensus 471 iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~p-----VvTd~-~kA~~aL~w~V~EMe~RY~l~a 538 (806)
+--+|-+.|++ | +.|++..|. +||-+.+ |-|+. +++..+|+.++++...-|+-+.
T Consensus 42 lGnlL~~~L~~-----------~-~~V~fagY~-~pHPl~~~i~lrI~t~~~~~p~~~l~~a~~~l~~~~~~i~ 102 (120)
T 1twf_K 42 LGNLIRAELLN-----------D-RKVLFAAYK-VEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALK 102 (120)
T ss_dssp HHHHHHHHHTT-----------C-TTEEEEEEE-CSCTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-----------C-CCCEEEEEE-CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999945-----------9-982498750-6898878127999969999999999999999999999999
No 286
>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=59.79 E-value=7.3 Score=16.96 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=9.9
Q ss_pred HCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 65985000142220011778999999999779
Q gi|254780799|r 752 RDNKASISYIQRRLGIGYNRAASIIENMEEKG 783 (806)
Q Consensus 752 ~~~~~s~s~lqr~~~igy~raar~~~~~e~~g 783 (806)
+..++|.+=|=|++.+--....|=|+.||+.|
T Consensus 28 ~d~R~s~~eIA~~lgls~~tv~~Ri~rLe~~G 59 (171)
T 2ia0_A 28 KDARLTISELSEQLKKPESTIHFRIKKLQERG 59 (171)
T ss_dssp HCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 84899999999998909999999999999789
No 287
>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=59.77 E-value=7.4 Score=16.96 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=21.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEE
Q ss_conf 344688887321005889999998664142379999
Q gi|254780799|r 596 IDEMADLMMVARKDIESAVQRLAQMARASGIHVIMA 631 (806)
Q Consensus 596 iDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~a 631 (806)
+.|+|.-.-+++..|-.-|.||-...---|.+.++.
T Consensus 24 ~~~iA~~lglS~~tv~~Ri~rL~~~GiI~~~~~~vd 59 (151)
T 2cyy_A 24 LREISKITGLAESTIHERIRKLRESGVIKKFTAIID 59 (151)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 999999989199999999999984598200379988
No 288
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A
Probab=59.77 E-value=2.6 Score=20.39 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=8.1
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 325665457899999974
Q gi|254780799|r 327 FSPKVMQNNACTLKSVLS 344 (806)
Q Consensus 327 ~s~eeL~~nA~lLE~tL~ 344 (806)
.++++..+..+.|.+.++
T Consensus 120 l~~~e~~~l~~~L~~~i~ 137 (140)
T 3hsr_A 120 ISEREASDIINNLRNFVS 137 (140)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 899999999999999998
No 289
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A*
Probab=59.77 E-value=3.2 Score=19.65 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=17.3
Q ss_pred ECCCCCEEEEEECCCCHHHH
Q ss_conf 41002023553047740679
Q gi|254780799|r 450 DLARMPHLLIAGTTGSGKSV 469 (806)
Q Consensus 450 DLakMPHLLIAGtTGSGKSV 469 (806)
.-.||++++|=|..||||+-
T Consensus 23 ~~~~~~riii~GpPGSGKgT 42 (246)
T 2bbw_A 23 MASKLLRAVILGPPGSGKGT 42 (246)
T ss_dssp ---CCCEEEEECCTTSSHHH
T ss_pred CCCCCCEEEEECCCCCCHHH
T ss_conf 35031449998999998799
No 290
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=59.75 E-value=2.2 Score=20.90 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=25.5
Q ss_pred EEEEEHHHH----HHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCC
Q ss_conf 687763446----88887321005889999998664142379999657775355
Q gi|254780799|r 591 YIVVVIDEM----ADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVI 640 (806)
Q Consensus 591 ~ivviiDEl----aDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvi 640 (806)
|=+||+||. +|.|. .+..+.+.+..--..+|++|=.|...+.
T Consensus 278 ~~~IIIDEaH~~d~~~il--------~~g~l~~l~~~~~~~~vlmSATpPg~~~ 323 (618)
T 2whx_A 278 YNLIVMDEAHFTDPCSVA--------ARGYISTRVEMGEAAAIFMTATPPGSTD 323 (618)
T ss_dssp CSEEEEESTTCCSHHHHH--------HHHHHHHHHHHTSCEEEEECSSCTTCCC
T ss_pred CCEEEEECCCCCCCCHHH--------HHHHHHHHHHCCCCEEEEEECCCCCCEE
T ss_conf 619999698405813456--------6778997401566408994058884078
No 291
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=59.73 E-value=3.9 Score=19.04 Aligned_cols=163 Identities=20% Similarity=0.324 Sum_probs=78.0
Q ss_pred ECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC-HHHHHHCCC-C---H--HHHCCCCCCHHHHHHH
Q ss_conf 4100202355304774067999999999998299578478885231-001110277-0---3--4312233430456689
Q gi|254780799|r 450 DLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK-MLELSVYDG-I---P--NLLTPVVTNPQKAVTV 522 (806)
Q Consensus 450 DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK-~vEls~Y~~-i---P--HLl~pVvTd~~kA~~a 522 (806)
++.+==-+-|-|..|||||..+++|- .| .+|++=+. ++|=+ +..++.++. | + +-|-|--|=.+..+.+
T Consensus 25 ~v~~Ge~~~llGpsGsGKsTll~~ia-Gl---~~p~~G~I-~~~g~~i~~~~~~~R~ig~vfQ~~~Lfp~ltV~eNi~~~ 99 (362)
T 2it1_A 25 KIKDGEFMALLGPSGSGKSTLLYTIA-GI---YKPTSGKI-YFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFP 99 (362)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHH-TS---SCCSEEEE-EETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHH
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHH-CC---CCCCCEEE-EECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 99999899999999854999999997-49---99886699-999999999997578879984587547898299999999
Q ss_pred HHH---HHHHHHHHHH-HHHHCCCCCH--------HHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999---9999999999-9987089968--------9999-9999887447866775446776545432223322323469
Q gi|254780799|r 523 LKW---LVCEMEERYQ-KMSKIGVRNI--------DGFN-LKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHM 589 (806)
Q Consensus 523 L~w---~V~EMe~RY~-l~a~~~vRni--------~~yN-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 589 (806)
|+. --+|.++|-+ ++...|..++ .|=. +|+.-|++ +-.=
T Consensus 100 l~~~~~~~~e~~~~v~~~l~~~gl~~~~~~~p~~LSGGq~QRvalARa----------------------------L~~~ 151 (362)
T 2it1_A 100 LELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARA----------------------------LVKE 151 (362)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHH----------------------------HTTC
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHH----------------------------HCCC
T ss_conf 998499999999999999874183225558965669999999999998----------------------------7109
Q ss_pred CEEEEEHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHH-CCCCEEEEEEC
Q ss_conf 868776344-688887321005889999998664142379999657775355435541-10251587645
Q gi|254780799|r 590 PYIVVVIDE-MADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKA-NFPTRISFQVS 657 (806)
Q Consensus 590 p~ivviiDE-laDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ika-n~p~riaf~v~ 657 (806)
|-|++ -|| ++-|=.....++ ..-|.+..+--|+-.|+.|+-+. -| .+--||+.--.
T Consensus 152 P~ill-lDEP~s~LD~~~r~~i---~~~l~~l~~~~g~t~i~vTHd~~--------ea~~~~dri~vm~~ 209 (362)
T 2it1_A 152 PEVLL-LDEPLSNLDALLRLEV---RAELKRLQKELGITTVYVTHDQA--------EALAMADRIAVIRE 209 (362)
T ss_dssp CSEEE-EESGGGGSCHHHHHHH---HHHHHHHHHHHTCEEEEEESCHH--------HHHHHCSEEEEEET
T ss_pred CCEEE-CCCCCCCCCHHHHHHH---HHHHHHHHHHHCCEEEEECCCHH--------HHHHHCCEEEEEEC
T ss_conf 98898-0887233598898758---99999999972999999889999--------99986999999989
No 292
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=59.73 E-value=4.9 Score=18.26 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=26.8
Q ss_pred EECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 54100202355304774067999999999998299578478885231
Q gi|254780799|r 449 ADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 449 ~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
.++.+==.+-|.|.+|||||--++.|.= -..|++=+ |.+|-+
T Consensus 29 l~i~~Ge~vaivG~sGsGKSTLl~ll~G----l~~p~~G~-I~~~g~ 70 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMIMG----ELEPSEGK-IKHSGR 70 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTT----SSCCSEEE-EEECSC
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC----CCCCCCCE-EEECCE
T ss_conf 9986998999999998839999999957----87778876-998883
No 293
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=59.69 E-value=4.9 Score=18.25 Aligned_cols=27 Identities=33% Similarity=0.335 Sum_probs=20.4
Q ss_pred EECCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 541002023553047740679999999
Q gi|254780799|r 449 ADLARMPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 449 ~DLakMPHLLIAGtTGSGKSV~iN~iI 475 (806)
.++.+==.+-|.|..|||||-.+|+|.
T Consensus 41 l~i~~Gei~~iiG~nGaGKSTL~~~i~ 67 (267)
T 2zu0_C 41 LDVHPGEVHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 688899799999999999999999985
No 294
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=59.68 E-value=5.2 Score=18.11 Aligned_cols=46 Identities=28% Similarity=0.575 Sum_probs=28.8
Q ss_pred CCEEEEECC----CCCEEEEEECCCCHHHHHHHHHHHHHHHH-CCHHHEEEEEECCC
Q ss_conf 666785410----02023553047740679999999999982-99578478885231
Q gi|254780799|r 444 GKPIIADLA----RMPHLLIAGTTGSGKSVAINTMILSLLYR-MTPAQCRLIMIDPK 495 (806)
Q Consensus 444 G~pvv~DLa----kMPHLLIAGtTGSGKSV~iN~iI~SlLyk-~~P~evkliliDPK 495 (806)
|.|+.-|+. +==.+-|.|.+|||||--++. |.. ..|++=+ |.+|-|
T Consensus 50 g~~vL~~vs~~i~~Ge~vaivG~sGsGKSTLl~l-----i~Gl~~p~~G~-I~i~g~ 100 (290)
T 2bbs_A 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMM-----IMGELEPSEGK-IKHSGR 100 (290)
T ss_dssp CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHH-----HTTSSCEEEEE-EECCSC
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHH-----HHCCCCCCCCE-EEECCE
T ss_conf 9833658589986999999999999759999999-----96787478657-999999
No 295
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- binding, RNA-binding, methylation, mRNA processing; HET: ADP; 2.60A {Homo sapiens}
Probab=59.66 E-value=7.4 Score=16.95 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=19.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 235530477406799999999999829
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRM 482 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~ 482 (806)
++++.--|||||+.|----++..+.+.
T Consensus 68 dviv~a~TGsGKTlay~lpi~~~~~~~ 94 (242)
T 3fe2_A 68 DMVGVAQTGSGKTLSYLLPAIVHINHQ 94 (242)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHHHHTS
T ss_pred CEEEECCCCCCCCCCCCCCHHHHHCCC
T ss_conf 889982799996020246113221035
No 296
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N*
Probab=59.63 E-value=2.8 Score=20.06 Aligned_cols=16 Identities=44% Similarity=0.650 Sum_probs=13.2
Q ss_pred EEEEEECCCCHHHHHH
Q ss_conf 2355304774067999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAI 471 (806)
Q Consensus 456 HLLIAGtTGSGKSV~i 471 (806)
=++.-|.|||||+--+
T Consensus 97 ti~aYGqTGSGKTyTm 112 (344)
T 3dc4_A 97 TALAYGQTGTGKSYSM 112 (344)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCEEEC
T ss_conf 7999613789850662
No 297
>3dhw_C Methionine import ATP-binding protein METN; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: c.37.1.12 d.58.18.13
Probab=59.62 E-value=7.4 Score=16.94 Aligned_cols=166 Identities=20% Similarity=0.270 Sum_probs=82.8
Q ss_pred EEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH------HHH--------HCCCCHHHHCCCC
Q ss_conf 85410020235530477406799999999999829957847888523100------111--------0277034312233
Q gi|254780799|r 448 IADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML------ELS--------VYDGIPNLLTPVV 513 (806)
Q Consensus 448 v~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v------Els--------~Y~~iPHLl~pVv 513 (806)
-.++.+==-+-|-|-.|||||..+++|- . |. +|+.=+ |++|=+-+ |+. +|.+ |+|+ |--
T Consensus 25 sl~i~~Ge~~~ivG~SGsGKSTLlr~i~-g-L~--~p~sG~-I~~~g~~i~~~~~~~l~~~Rr~ig~VfQ~-~~L~-~~~ 97 (343)
T 3dhw_C 25 SLHVPAGQIYGVIGASGAGKSTLIRCVN-L-LE--RPTEGS-VLVDGQELTTLSESELTKARRQIGMIFQH-FNLL-SSR 97 (343)
T ss_dssp EEEECSSCEEEEEESTTSSHHHHHHHHT-T-SS--CCSEEE-EEETTEEECTTCHHHHHHHHHHEEECCSS-CCCC-TTS
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHH-C-CC--CCCCEE-EEECCEECCCCCHHHHHHHHHCEEEEECC-CHHC-CCC
T ss_conf 7899899899999999834999999997-5-99--999759-99999999989989999986077899015-0106-896
Q ss_pred CCHHHHHHHHH---HHHHHHHHH-HHHHHHCCCCCHH---------HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43045668999---999999999-9999870899689---------9999999887447866775446776545432223
Q gi|254780799|r 514 TNPQKAVTVLK---WLVCEMEER-YQKMSKIGVRNID---------GFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYE 580 (806)
Q Consensus 514 Td~~kA~~aL~---w~V~EMe~R-Y~l~a~~~vRni~---------~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (806)
|=-...+..|+ +--+|.++| .++|...|..+.. |--+|+.-|++
T Consensus 98 tv~eni~~~l~~~~~~~~~~~~rv~elL~~vgL~~~~~~~P~eLSGGq~QRVaIARA----------------------- 154 (343)
T 3dhw_C 98 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARA----------------------- 154 (343)
T ss_dssp BHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHH-----------------------
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHH-----------------------
T ss_conf 299999899998599999999999999987699357648944489989989999876-----------------------
Q ss_pred CCCCCCCCCCEEEEEHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCC
Q ss_conf 322323469868776344-6888873210058899999986641423799996577753554355411025158764586
Q gi|254780799|r 581 TEHFDFQHMPYIVVVIDE-MADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSK 659 (806)
Q Consensus 581 ~~~~~~~~lp~ivviiDE-laDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~ 659 (806)
+-.=|-| ++-|| .+-|=....++|-+.+.+|. |--|+-+|+.|.-..+ =+.+--||+.--.-+
T Consensus 155 -----L~~~P~l-Ll~DEPTs~LD~~~~~~i~~ll~~l~---~~~g~Tii~vTHd~~~-------a~~~aDrv~vm~~G~ 218 (343)
T 3dhw_C 155 -----LASNPKV-LLCDEATSALDPATTRSILELLKDIN---RRLGLTILLITHEMDV-------VKRICDCVAVISNGE 218 (343)
T ss_dssp -----HHTCCSE-EEEESGGGSSCHHHHHHHHHHHHHHH---HHHCCEEEEEBSCHHH-------HHHHCSEEEEEETTE
T ss_pred -----HHCCCCE-EEECCCCCCCCHHHHHHHHHHHHHHH---HHHCCEEEEECCCHHH-------HHHHCCEEEEEECCE
T ss_conf -----5118983-66368765479889999999999999---9629889998899999-------998699999997989
No 298
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=59.54 E-value=7.4 Score=16.93 Aligned_cols=36 Identities=28% Similarity=0.323 Sum_probs=21.8
Q ss_pred EEEEEEC-CCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 2355304-774067999999999998299578478885231
Q gi|254780799|r 456 HLLIAGT-TGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 456 HLLIAGt-TGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
-+.|+|| ||.|||+--=.+ +..|-+. -.|-..+||-
T Consensus 3 ~~~Itgt~~GVGKTtvs~~L-a~~La~~---G~rV~~~d~d 39 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCAL-LQAAKAA---GYRTAGYKPV 39 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHH-HHHHHHT---TCCEEEECSE
T ss_pred EEEEEECCCCCCHHHHHHHH-HHHHHHC---CCCEEEECCC
T ss_conf 29999899997599999999-9999977---9949998861
No 299
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell cycle, hydrolase, membrane metal-binding, metalloprotease; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=59.51 E-value=2.7 Score=20.23 Aligned_cols=69 Identities=17% Similarity=0.364 Sum_probs=40.1
Q ss_pred CCCCCEEEEHHHCCCHHHHHCCCCC--H-------HHCCCCCCCCEEEEECCCCC-EEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 4566238734230721343022100--0-------21045666666785410020-235530477406799999999999
Q gi|254780799|r 410 NDIRETVMLRDLIVSRVFEKNQCDL--A-------INLGKSIEGKPIIADLARMP-HLLIAGTTGSGKSVAINTMILSLL 479 (806)
Q Consensus 410 N~~r~~V~lreil~s~~f~~s~~~L--~-------iaLGKdI~G~pvv~DLakMP-HLLIAGtTGSGKSV~iN~iI~SlL 479 (806)
|.+|-.|.|.||...++-++.=..+ + -.+|. ++| ++|+.|..|+|||-...++--.+
T Consensus 2 ~~~~p~v~~~di~G~e~~k~~l~~~i~~l~~~~~~~~~g~------------~~~~gvLl~GppGtGKT~la~aia~e~- 68 (268)
T 2r62_A 2 NAEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGA------------KIPKGVLLVGPPGTGKTLLAKAVAGEA- 68 (268)
T ss_dssp CCCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSC------------CCCSCCCCBCSSCSSHHHHHHHHHHHH-
T ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHHHHHCHHHHHHCCC------------CCCCEEEEECCCCCCCHHHHHHHHHHC-
T ss_conf 8889999899972569999999999999879999997599------------998746876899998007999999974-
Q ss_pred HHCCHHHEEEEEECCCHH
Q ss_conf 829957847888523100
Q gi|254780799|r 480 YRMTPAQCRLIMIDPKML 497 (806)
Q Consensus 480 yk~~P~evkliliDPK~v 497 (806)
.+.++-+++..+
T Consensus 69 ------~~~~~~i~~s~l 80 (268)
T 2r62_A 69 ------HVPFFSMGGSSF 80 (268)
T ss_dssp ------TCCCCCCCSCTT
T ss_pred ------CCCEEEEEHHHH
T ss_conf ------998799885894
No 300
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum}
Probab=59.47 E-value=4.2 Score=18.80 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=29.0
Q ss_pred HHHHHHHCCC--EEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCH-HHCCCCCEEEECHH
Q ss_conf 9999996598--50001422200117789999999997798680-22788726731712
Q gi|254780799|r 746 AVDIVLRDNK--ASISYIQRRLGIGYNRAASIIENMEEKGVIGP-ASSTGKREILISSM 801 (806)
Q Consensus 746 a~~~v~~~~~--~s~s~lqr~~~igy~raar~~~~~e~~giv~~-~~g~~~r~vl~~~~ 801 (806)
++.++...+. .+.+-|-+++.+.-.-+.|+++.||++|+|-- ++..-.|.+++.-.
T Consensus 46 vL~~L~~~~~~~it~~eLa~~l~~~~~~~sr~l~~L~~~glI~r~~~~~D~R~~~l~LT 104 (148)
T 3jw4_A 46 MIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVL 104 (148)
T ss_dssp HHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBC
T ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEC
T ss_conf 99999937999939999999989778589999999998888510577888883476889
No 301
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=59.40 E-value=7 Score=17.14 Aligned_cols=47 Identities=34% Similarity=0.508 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEE------EEEECCEEEEEEEEECCCCCHHHHHH
Q ss_conf 25665457899999974248632899------84104424444432147863999997
Q gi|254780799|r 328 SPKVMQNNACTLKSVLSDFGIQGEIV------NVRPGPVITLYELEPAPGIKSSRIIG 379 (806)
Q Consensus 328 s~eeL~~nA~lLE~tL~dFGVe~~Vv------~v~pGPVVTrYEi~PApGVKvSKI~n 379 (806)
|+++|+. |.+++++.|+...++ ++-|| ++|.--|-|+|--++.+|++
T Consensus 60 ~e~~L~~----l~~~a~~~~l~~~~v~DAG~Tei~~g-t~TvlaigP~~~~~id~itg 112 (117)
T 1rlk_A 60 DLDEIME----IKRMADSMGIVNEIVQDRGYTQVEPG-TITCIGLGPDEEEKLDKITG 112 (117)
T ss_dssp SHHHHHH----HHHHHHHHTCCEEEEECCCSSSSSCC-CEEEEEEEEEEHHHHHHHHT
T ss_pred CHHHHHH----HHHHHHHCCCCEEEEECCCCCCCCCC-CEEEEEECCCCHHHHHHHHC
T ss_conf 9999999----99999987998899986897603999-87899977688889888638
No 302
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=59.31 E-value=7.5 Score=16.90 Aligned_cols=55 Identities=13% Similarity=0.219 Sum_probs=34.4
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCH-HHCCCCCEEEEC
Q ss_conf 9999999659850001422200117789999999997798680-227887267317
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGP-ASSTGKREILIS 799 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~-~~g~~~r~vl~~ 799 (806)
.++..+.+.+..+.+-|=+++.+--+...|+++.||++|.|-- .+....|.+.+.
T Consensus 33 ~vL~~i~~~~~~t~~eLa~~~~~~~~~vs~~v~~L~~~glv~r~~~~~DrR~~~l~ 88 (138)
T 3bpv_A 33 ACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILE 88 (138)
T ss_dssp HHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEE
T ss_conf 99999985899799999999897987999999999968987860289988756878
No 303
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=59.22 E-value=5 Score=18.21 Aligned_cols=62 Identities=16% Similarity=0.238 Sum_probs=35.5
Q ss_pred CCCCHHHCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHH----------EEEEEECCCHHHHH
Q ss_conf 21000210456666667854100202355304774067999999999998299578----------47888523100111
Q gi|254780799|r 431 QCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQ----------CRLIMIDPKMLELS 500 (806)
Q Consensus 431 ~~~L~iaLGKdI~G~pvv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~e----------vkliliDPK~vEls 500 (806)
..-.|=.-.|..+++.-. .++|.|..|+|||-.+|.++- ..-+++ .+-+.+|.+.+.|.
T Consensus 12 ~~~~p~~~~~~~~~~~~~-------Ki~v~G~~~vGKTsLi~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (199)
T 2p5s_A 12 SGLVPRGSAKSFSSQKAY-------KIVLAGDAAVGKSSFLMRLCK----NEFRENISATLGVDFQMKTLIVDGERTVLQ 80 (199)
T ss_dssp ----------------CE-------EEEEESSTTSSHHHHHHHHHH----CCCC----------CEEEEEEETTEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCE-------EEEEECCCCCCHHHHHHHHHC----CCCCCCCCCCCCEEEEEEEEEECCEEEEEE
T ss_conf 886868877777778643-------999999999798999999963----987886488432567776764689089999
Q ss_pred HCC
Q ss_conf 027
Q gi|254780799|r 501 VYD 503 (806)
Q Consensus 501 ~Y~ 503 (806)
+++
T Consensus 81 i~D 83 (199)
T 2p5s_A 81 LWD 83 (199)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 984
No 304
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluorescence, membrane, disease mutation, golgi stack, GTP- binding; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=59.02 E-value=6 Score=17.62 Aligned_cols=51 Identities=24% Similarity=0.325 Sum_probs=31.2
Q ss_pred CCEE--EEEECCCCHHHHHHHHHHHHHH---HHCCH--HHEEEEEECCCHHHHHHCCC
Q ss_conf 2023--5530477406799999999999---82995--78478885231001110277
Q gi|254780799|r 454 MPHL--LIAGTTGSGKSVAINTMILSLL---YRMTP--AQCRLIMIDPKMLELSVYDG 504 (806)
Q Consensus 454 MPHL--LIAGtTGSGKSV~iN~iI~SlL---yk~~P--~evkliliDPK~vEls~Y~~ 504 (806)
||+. ++.|..|+|||-.+|.+...=- |..++ .-.+-+++|-+.+.+.+++-
T Consensus 1 m~e~Kv~liG~~~vGKTSll~~l~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~ 58 (166)
T 2ce2_X 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDT 58 (166)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEEC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEEC
T ss_conf 9866999999999799999999970999988688324688899977997999998615
No 305
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=58.90 E-value=3 Score=19.92 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=15.5
Q ss_pred ECCCCHHHHHHHHHHHHHCCC
Q ss_conf 334898899999999971289
Q gi|254780799|r 694 GPFVSDIEVEKVVSHLKTQGE 714 (806)
Q Consensus 694 g~~v~~~ev~~v~~~~~~q~~ 714 (806)
|...+.+++++++.++..++.
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~ 507 (591)
T 2v1x_A 487 APTLPREDLEKIIAHFLIQQY 507 (591)
T ss_dssp CCSCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHHHCH
T ss_conf 677899999999999999553
No 306
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=58.86 E-value=5.5 Score=17.90 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=18.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 35530477406799999999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLL 479 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlL 479 (806)
..|-|.++.|||--||+++-...
T Consensus 163 v~vvG~~NvGKSTLIN~L~~~~~ 185 (368)
T 3h2y_A 163 VYVVGCTNVGKSTFINRMIKEFS 185 (368)
T ss_dssp EEEEEBTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99975787563788888765303
No 307
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=58.82 E-value=7.6 Score=16.84 Aligned_cols=135 Identities=13% Similarity=0.147 Sum_probs=65.5
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHCC--HHHEEEEEECC------CHHHHHHCCCCHHHHCCCCCCHHHHHHHHH
Q ss_conf 0202355304774067999999999998299--57847888523------100111027703431223343045668999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMT--PAQCRLIMIDP------KMLELSVYDGIPNLLTPVVTNPQKAVTVLK 524 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~--P~evkliliDP------K~vEls~Y~~iPHLl~pVvTd~~kA~~aL~ 524 (806)
+.==.+|+|..|||||..-..+...-..... -.+-+-+.||- .++.= .+-+
T Consensus 177 ~G~ItEI~GepGsGKTqLalqlav~~ql~~e~gg~gg~vvYIDTE~tf~~eRl~~---------------------ia~~ 235 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVS---------------------IAQR 235 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHH---------------------HHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH---------------------HHHH
T ss_conf 8848998569989999999999999854355413798479997699988999999---------------------9987
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHH
Q ss_conf 99999999999998708996899999999887447866775446776545432223322323469868776344688887
Q gi|254780799|r 525 WLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMM 604 (806)
Q Consensus 525 w~V~EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm 604 (806)
|-++. +.-.+...-..+.|.+...+.+..... .+...++-++|||=+..|..
T Consensus 236 ~g~D~-~~~l~~I~~~r~~~~~~~~~~l~~l~~---------------------------~~~~~~~~LlIIDSi~al~r 287 (400)
T 3lda_A 236 FGLDP-DDALNNVAYARAYNADHQLRLLDAAAQ---------------------------MMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp TTCCH-HHHHHTEEEEECCSHHHHHHHHHHHHH---------------------------HHHHSCEEEEEEETGGGGCC
T ss_pred CCCCH-HHHHHCEEEEECCCHHHHHHHHHHHHH---------------------------HHHCCCCEEEEEEHHHHHHH
T ss_conf 59987-887513446504628889999998988---------------------------75226760799620234322
Q ss_pred HCC----------CHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 321----------00588999999866414237999965777
Q gi|254780799|r 605 VAR----------KDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 605 ~~~----------~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
+.- +.+-....+|..+|.--++-.|+..|-.+
T Consensus 288 ~~~~~~~~l~~r~~~L~k~l~~L~~lA~~~~vaVIvTNQv~~ 329 (400)
T 3lda_A 288 TDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVA 329 (400)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCEEE
T ss_conf 321255305789999999999999999981978999721676
No 308
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=58.81 E-value=7.6 Score=16.84 Aligned_cols=47 Identities=23% Similarity=0.404 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEE------EEEECCEEEEEEEEECCCCCHHHHHH
Q ss_conf 25665457899999974248632899------84104424444432147863999997
Q gi|254780799|r 328 SPKVMQNNACTLKSVLSDFGIQGEIV------NVRPGPVITLYELEPAPGIKSSRIIG 379 (806)
Q Consensus 328 s~eeL~~nA~lLE~tL~dFGVe~~Vv------~v~pGPVVTrYEi~PApGVKvSKI~n 379 (806)
|+++|.+ |.++.++.|+...++ ++-|| ++|.--+-|+|--++.+|++
T Consensus 58 ~e~~L~~----l~~~a~~~~l~~~~i~DAG~Tei~pg-t~TvlaigP~~~~~id~itg 110 (115)
T 2zv3_A 58 SEKELID----IYNKARSEGLPCSIIRDAGHTQLEPG-TLTAVAIGPEKDEKIDKITG 110 (115)
T ss_dssp SHHHHHH----HHHHHHHHTCCEEEEEECC--------EEEEEEEEEECHHHHHHHHT
T ss_pred CHHHHHH----HHHHHHHCCCCEEEEECCCCCCCCCC-CEEEEEECCCCHHHHHHHHC
T ss_conf 9999999----99999987998899981897635999-86899978788789888638
No 309
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=58.72 E-value=5.5 Score=17.87 Aligned_cols=48 Identities=21% Similarity=0.436 Sum_probs=27.4
Q ss_pred HCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEEC
Q ss_conf 659850001422200117789999999997798680227-887267317
Q gi|254780799|r 752 RDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILIS 799 (806)
Q Consensus 752 ~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~ 799 (806)
..+-.|.+-|-.++.+--+...|+++.||++|.|-...+ .-.|.+++.
T Consensus 47 ~~~~~t~~ela~~~~i~~~~vs~~i~~L~~~g~v~r~~~~~D~R~~~l~ 95 (146)
T 2gxg_A 47 SDGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIE 95 (146)
T ss_dssp TTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEE
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHH
T ss_conf 8599199999999897986999999999868897860787677504430
No 310
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=58.50 E-value=5.3 Score=18.03 Aligned_cols=20 Identities=20% Similarity=0.541 Sum_probs=16.2
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 23553047740679999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI 475 (806)
-+.|.|.+|||||.-+|.++
T Consensus 8 iivi~GpsGsGK~tl~~~L~ 27 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIF 27 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999999999999998
No 311
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2ke5_A*
Probab=58.27 E-value=5.4 Score=17.95 Aligned_cols=44 Identities=18% Similarity=0.435 Sum_probs=27.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHH---------EEEEEECCCHHHHHHCC
Q ss_conf 2355304774067999999999998299578---------47888523100111027
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQ---------CRLIMIDPKMLELSVYD 503 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~e---------vkliliDPK~vEls~Y~ 503 (806)
-++|-|..|+|||--||.+ +...-|++ .+-+.+|-+.+.+..++
T Consensus 6 KI~iiG~~~vGKSsli~~~----~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~~~~d 58 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQF----MYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILD 58 (168)
T ss_dssp EEEEECSTTSSHHHHHHHH----HHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHH----HCCCCCCCCCCEEEEEEEEEEECCCCEEEEEEEE
T ss_conf 9999998998889999999----6299988869803578888883299379999973
No 312
>2b34_A F35G2.2, MAR1 ribonuclease; isochorismatase family, structural genomics, PSI, protein structure initiative; 2.14A {Caenorhabditis elegans}
Probab=58.25 E-value=5.8 Score=17.72 Aligned_cols=46 Identities=24% Similarity=0.273 Sum_probs=32.2
Q ss_pred EEEEHHHHHHHHHHCC--CHHHHHHHHHHHHHHHCCEEEEEEECCCCC
Q ss_conf 8776344688887321--005889999998664142379999657775
Q gi|254780799|r 592 IVVVIDEMADLMMVAR--KDIESAVQRLAQMARASGIHVIMATQRPSV 637 (806)
Q Consensus 592 ivviiDElaDlmm~~~--~~ve~~i~rlaq~ara~GiHli~aTqrPsv 637 (806)
-++|||==-|++--.. .++-..|.||++.||+.|++.|..+|.|.-
T Consensus 16 ALlvID~Q~~f~~~~~~~~~~i~ni~~li~~ar~~~~pVi~~~~~~~~ 63 (199)
T 2b34_A 16 ALFVCDLQEKFASNIKYFPEIITTSRRLIDAARILSIPTIVTEQYPKG 63 (199)
T ss_dssp EEEEECCBGGGTTSSTTHHHHHHHHHHHHHHHHHTTCCEEEEEESHHH
T ss_pred EEEEEECCCCHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 999990821020545699999999999999999849988997356778
No 313
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=57.88 E-value=7.7 Score=16.80 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=15.8
Q ss_pred EEEEHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 5000142220011778999999999779868
Q gi|254780799|r 756 ASISYIQRRLGIGYNRAASIIENMEEKGVIG 786 (806)
Q Consensus 756 ~s~s~lqr~~~igy~raar~~~~~e~~giv~ 786 (806)
.+.+-|.+++.+=-.-+.|+++.||++|+|-
T Consensus 69 ~t~~eLa~~l~i~~stvsr~v~~L~~~GlI~ 99 (166)
T 3deu_A 69 QSQIQLAKAIGIEQPSLVRTLDQLEDKGLIS 99 (166)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 7999999997989989999999998589888
No 314
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* 2fky_A* 2fl2_A* 2fl6_A* 2ieh_A* 2q2y_A* 2q2z_A* ...
Probab=57.78 E-value=3.4 Score=19.47 Aligned_cols=16 Identities=31% Similarity=0.692 Sum_probs=13.4
Q ss_pred EEEEEECCCCHHHHHH
Q ss_conf 2355304774067999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAI 471 (806)
Q Consensus 456 HLLIAGtTGSGKSV~i 471 (806)
=++.-|.|||||+=.+
T Consensus 91 ~i~aYGqtgSGKTyTm 106 (359)
T 1x88_A 91 TIFAYGQTGTGKTFTM 106 (359)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEEECCCCCCCEEE
T ss_conf 3994314788852785
No 315
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=57.61 E-value=5.2 Score=18.06 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=7.3
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 325665457899999974
Q gi|254780799|r 327 FSPKVMQNNACTLKSVLS 344 (806)
Q Consensus 327 ~s~eeL~~nA~lLE~tL~ 344 (806)
+++++++.-.+.|.+.++
T Consensus 139 l~~~e~~~l~~~L~~l~~ 156 (161)
T 3e6m_A 139 VDPDKLQTCIEVLGEILK 156 (161)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 999999999999999997
No 316
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=57.54 E-value=8 Score=16.69 Aligned_cols=53 Identities=13% Similarity=0.279 Sum_probs=30.6
Q ss_pred HHHHHHHCC-CEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH-CCCCCEEEE
Q ss_conf 999999659-85000142220011778999999999779868022-788726731
Q gi|254780799|r 746 AVDIVLRDN-KASISYIQRRLGIGYNRAASIIENMEEKGVIGPAS-STGKREILI 798 (806)
Q Consensus 746 a~~~v~~~~-~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~-g~~~r~vl~ 798 (806)
++..+...+ ..+.+-|-+++.+--+-+.|+++.||++|+|--.. ..-.|.+++
T Consensus 42 iL~~l~~~~~~~t~~eL~~~~~~~~~~vs~~i~~L~~~glI~r~~~~~D~R~~~i 96 (146)
T 2fbh_A 42 VLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHI 96 (146)
T ss_dssp HHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEE
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEE
T ss_conf 9999986799999999999989689899999999963987786367899895687
No 317
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=57.43 E-value=5.9 Score=17.67 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=31.1
Q ss_pred CCCC--EEEEEECCCCHHHHHHHHHHHHHHHHCCH----HHEEEEEECCCHHHHHHCC
Q ss_conf 0020--23553047740679999999999982995----7847888523100111027
Q gi|254780799|r 452 ARMP--HLLIAGTTGSGKSVAINTMILSLLYRMTP----AQCRLIMIDPKMLELSVYD 503 (806)
Q Consensus 452 akMP--HLLIAGtTGSGKSV~iN~iI~SlLyk~~P----~evkliliDPK~vEls~Y~ 503 (806)
..+| +++|-|..|+|||-.+|..+..---...| .-.|-+.+|-+.+.+.+++
T Consensus 3 ~~~p~~ki~vvG~~~vGKTsli~r~~~~~f~~~~~~~~~~~~k~~~~d~~~~~l~i~D 60 (178)
T 2iwr_A 3 RSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIRE 60 (178)
T ss_dssp CCCCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEE
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEE
T ss_conf 8788469999998998899999999719788878864316999999888999999998
No 318
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=57.42 E-value=4.7 Score=18.43 Aligned_cols=178 Identities=19% Similarity=0.287 Sum_probs=77.5
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH-----HHH-----------HCCCCHHHHCCCCCC
Q ss_conf 0020235530477406799999999999829957847888523100-----111-----------027703431223343
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML-----ELS-----------VYDGIPNLLTPVVTN 515 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v-----Els-----------~Y~~iPHLl~pVvTd 515 (806)
.+==-+-|-|..|||||..+++| .-| + +|++ =-|.+|=+-+ .+. -|.=.||| |=
T Consensus 28 ~~Ge~~~ilGpsGsGKSTllr~i-~Gl-~--~p~~-G~I~~~g~~i~~~~~~~~~~~r~ig~vfQ~~~Lfp~l-----tV 97 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCL-AGF-E--QPDS-GEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHL-----TV 97 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHH-HTS-S--CCSE-EEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTS-----CH
T ss_pred CCCCEEEEECCCCCHHHHHHHHH-HCC-C--CCCC-EEEEECCEECCCCCCCCCHHHCCEEEECCCCCCCCCC-----CH
T ss_conf 99989999999986499999999-749-9--9997-5999999999898755406658869997788658887-----19
Q ss_pred HHHHHHHHHH---HHHHHHHHH-HHHHHCCC--------CCHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0456689999---999999999-99987089--------9689999-999988744786677544677654543222332
Q gi|254780799|r 516 PQKAVTVLKW---LVCEMEERY-QKMSKIGV--------RNIDGFN-LKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETE 582 (806)
Q Consensus 516 ~~kA~~aL~w---~V~EMe~RY-~l~a~~~v--------Rni~~yN-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (806)
-...+.+|++ --.|+++|. +++...|. +.+.|=. +|+.-|++-
T Consensus 98 ~eNi~~~l~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~p~~LSGGq~QRVaiARaL------------------------ 153 (359)
T 3fvq_A 98 YRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARAL------------------------ 153 (359)
T ss_dssp HHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH------------------------
T ss_conf 99998776416789899999999998764987675379313898898899998765------------------------
Q ss_pred CCCCCCCCEEEEEHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCC-
Q ss_conf 2323469868776344-68888732100588999999866414237999965777535543554110251587645866-
Q gi|254780799|r 583 HFDFQHMPYIVVVIDE-MADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKI- 660 (806)
Q Consensus 583 ~~~~~~lp~ivviiDE-laDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~- 660 (806)
-.=|- |++-|| ++-|=.....++.. -|.+.-+--|+-.|+.|.-+.. =..+--||+.--.-++
T Consensus 154 ----~~~P~-ilLlDEP~s~LD~~~~~~l~~---~l~~l~~~~g~t~i~vTHd~~e-------a~~~aDri~vm~~G~iv 218 (359)
T 3fvq_A 154 ----APDPE-LILLDEPFSALDEQLRRQIRE---DMIAALRANGKSAVFVSHDREE-------ALQYADRIAVMKQGRIL 218 (359)
T ss_dssp ----TTCCS-EEEEESTTTTSCHHHHHHHHH---HHHHHHHHTTCEEEEECCCHHH-------HHHHCSEEEEEETTEEE
T ss_pred ----CCCCC-EEEECCCCCCCCHHHHHHHHH---HHHHHHHHCCCEEEEECCCHHH-------HHHHCCEEEEEECCEEE
T ss_conf ----15998-799758764369999999999---9999999709999999889999-------99869999999899999
Q ss_pred ---CCHHHCCCC---CHHHHCCCC
Q ss_conf ---421233886---457865887
Q gi|254780799|r 661 ---DSRTILGEQ---GAEQLLGQG 678 (806)
Q Consensus 661 ---dSrtild~~---gae~Llg~g 678 (806)
..+.|+..+ -+-+++|..
T Consensus 219 q~g~p~ei~~~P~~~~va~~~G~~ 242 (359)
T 3fvq_A 219 QTASPHELYRQPADLDAALFIGEG 242 (359)
T ss_dssp EEECHHHHHHSCSCHHHHHHHSCC
T ss_pred EECCHHHHHHCCCCHHHHHHCCCC
T ss_conf 987999998689997999863997
No 319
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=57.41 E-value=7.2 Score=17.04 Aligned_cols=53 Identities=9% Similarity=0.210 Sum_probs=28.2
Q ss_pred HHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH-CCCCCEEEE
Q ss_conf 99999965985000142220011778999999999779868022-788726731
Q gi|254780799|r 746 AVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPAS-STGKREILI 798 (806)
Q Consensus 746 a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~-g~~~r~vl~ 798 (806)
++..+...+..|.+-|-+++.+-=.-..|+++.||++|+|--.. ..-.|.+++
T Consensus 36 iL~~l~~~~~~t~~~la~~l~~~~~~vs~~i~~L~~~glv~r~~~~~D~R~~~l 89 (145)
T 3g3z_A 36 VLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLL 89 (145)
T ss_dssp HHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCE
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEE
T ss_conf 999999879949999999989698899999999985798798576888774687
No 320
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=57.30 E-value=3 Score=19.82 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=20.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 0202355304774067999999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~S 477 (806)
|-..++|-|..|+|||-.||.+...
T Consensus 321 ~~~ki~ivG~~~vGKTsli~~l~~~ 345 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLG 345 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEEECCCCCCCHHHHHHHHCC
T ss_conf 5318999898877733321212033
No 321
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=57.29 E-value=4.3 Score=18.71 Aligned_cols=18 Identities=28% Similarity=0.669 Sum_probs=14.6
Q ss_pred EEEEEECCCCHHHHHHHH
Q ss_conf 235530477406799999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINT 473 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~ 473 (806)
++++..-|||||+.|.--
T Consensus 63 dvli~a~TGsGKTlay~l 80 (230)
T 2oxc_A 63 DLIVQAKSGTGKTCVFST 80 (230)
T ss_dssp CEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCCEEEEC
T ss_conf 899992798764202304
No 322
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=57.18 E-value=4.4 Score=18.66 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=20.1
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 202355304774067999999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI~S 477 (806)
.||+|+-|-.|+||+-..+++--.
T Consensus 38 ~~~iLl~GPpG~GKTtlA~~iA~~ 61 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 985999897995199999999998
No 323
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens}
Probab=57.15 E-value=3.8 Score=19.10 Aligned_cols=85 Identities=18% Similarity=0.167 Sum_probs=41.7
Q ss_pred CCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHCCC
Q ss_conf 98687763446888873210058899999986641423799996577753554355411025158764586642123388
Q gi|254780799|r 589 MPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGE 668 (806)
Q Consensus 589 lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtild~ 668 (806)
..+-|.++||-.- ...++...+.+.-| ....-..+.+|.|.-.-|. |.-.-+-|..
T Consensus 294 ~~~gv~~iDe~~~----l~~e~~~~L~~~lE--~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~----------------- 349 (456)
T 2c9o_A 294 LVPGVLFVDEVHM----LDIECFTYLHRALE--SSIAPIVIFASNRGNCVIR-GTEDITSPHG----------------- 349 (456)
T ss_dssp EEECEEEEESGGG----CBHHHHHHHHHHTT--STTCCEEEEEECCSEEECB-TTSSCEEETT-----------------
T ss_pred CCCCCCHHHHHHH----HHHHHHHHHHHHHH--CCCCCEEEECCCCCEEEEE-EECCCCCCCC-----------------
T ss_conf 0256522019888----79999999999974--2466728833887615897-4067777667-----------------
Q ss_pred CCHHHHCCCCCEEEECCC--CCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 645786588754773689--8325888334898899999999971
Q gi|254780799|r 669 QGAEQLLGQGDMLYMTGG--GRVQRIHGPFVSDIEVEKVVSHLKT 711 (806)
Q Consensus 669 ~gae~Llg~gdml~~~~~--~~~~r~~g~~v~~~ev~~v~~~~~~ 711 (806)
+|+. ++...++....+++++..+.....+
T Consensus 350 --------------~~~~l~~r~~~~~~~~~~~~~i~~iL~~~~~ 380 (456)
T 2c9o_A 350 --------------IPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQ 380 (456)
T ss_dssp --------------CCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred --------------CCCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf --------------8834210455421013699999999999999
No 324
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 1zjh_A 3g2g_A 1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A* 2vgg_A* ...
Probab=57.08 E-value=3.3 Score=19.56 Aligned_cols=117 Identities=28% Similarity=0.318 Sum_probs=69.1
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1223343045668999999999999999987089968999999998874-478667754467765454322233223234
Q gi|254780799|r 509 LTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHN-TGKKFNRTVQTGFDRKTGEAIYETEHFDFQ 587 (806)
Q Consensus 509 l~pVvTd~~kA~~aL~w~V~EMe~RY~l~a~~~vRni~~yN~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (806)
-.|.+|+ |-...|+|++ |.--+..+..-||+-+.--+ +++... .|... ++.. ..| ....++
T Consensus 236 ~lp~lte--kD~~di~fa~---~~~vD~ialSFVr~a~dv~~-~r~~l~~~g~~i--~IIa---------KIE-~~~av~ 297 (550)
T 3gr4_A 236 DLPAVSE--KDIQDLKFGV---EQDVDMVFASFIRKASDVHE-VRKVLGEKGKNI--KIIS---------KIE-NHEGVR 297 (550)
T ss_dssp CCCSSCH--HHHHHHHHHH---HTTCSEEEETTCCSHHHHHH-HHHHHTTTTTTS--EEEE---------EEC-SHHHHH
T ss_pred CCCCCCH--HHHHHHHHHH---HCCCCEEEEECCCCHHHHHH-HHHHHHHCCCCC--EEEE---------EEE-CCHHHH
T ss_conf 7522668--7899999998---74997899606687666999-999999649984--2899---------652-102444
Q ss_pred CCCEEEEEHHHHHHHHHHCCCH---------HHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEE
Q ss_conf 6986877634468888732100---------5889999998664142379999657775355435541102515
Q gi|254780799|r 588 HMPYIVVVIDEMADLMMVARKD---------IESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRI 652 (806)
Q Consensus 588 ~lp~ivviiDElaDlmm~~~~~---------ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~ri 652 (806)
.+.-|+ +-+|=+|+|.-| |=..=-++-+++|.+|--.|+||| +.--+|+...|||-
T Consensus 298 NldeIl----~~sDgIMVARGDLgvEip~e~vp~~QK~II~~c~~~gKPVIvATq-----mLeSMi~~p~PTRA 362 (550)
T 3gr4_A 298 RFDEIL----EASDGIMVARGDLGIEIPAEKVFLAQKMMIGRCNRAGKPVICATQ-----MLESMIKKPRPTRA 362 (550)
T ss_dssp THHHHH----HHSSEEEEEHHHHHHHSCGGGHHHHHHHHHHHHHHHTCCEEEESS-----TTGGGGTCSSCCHH
T ss_pred HHHHHH----HHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCH-----HHHHHHHCCCCCHH
T ss_conf 167787----636689995566011289999999999999999874992898457-----67767638999706
No 325
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=57.06 E-value=8.1 Score=16.64 Aligned_cols=56 Identities=20% Similarity=0.158 Sum_probs=41.9
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH-HCCCCCEEEECH
Q ss_conf 99999996598500014222001177899999999977986802-278872673171
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA-SSTGKREILISS 800 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~-~g~~~r~vl~~~ 800 (806)
.++..+.+.+-.|.+-|.+++.+--.-..|+++.||++|+|-.. +....|.+++.-
T Consensus 33 ~vL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~g~i~r~~~~~D~R~~~l~L 89 (144)
T 1lj9_A 33 LYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYA 89 (144)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEE
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEE
T ss_conf 999999848997999999998978889999999999689863114888888002258
No 326
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=57.05 E-value=6.9 Score=17.15 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=20.1
Q ss_pred CCEEEEEECCCCHHHHHHHHHH
Q ss_conf 2023553047740679999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~iI 475 (806)
||-.-+.|-+++|||--+|++.
T Consensus 3 ~~~ValvG~~nvGKSsL~n~L~ 24 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALT 24 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
T ss_conf 8879999999971999999996
No 327
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=57.01 E-value=5 Score=18.22 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=17.1
Q ss_pred CEEEEEECCCCHHHHHHHHH
Q ss_conf 02355304774067999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~i 474 (806)
-.+++-|..|+|||--+|.+
T Consensus 19 ~kI~ivG~~~~GKSSLl~~l 38 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKF 38 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 49999999999989999999
No 328
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=56.92 E-value=5.9 Score=17.70 Aligned_cols=19 Identities=42% Similarity=0.597 Sum_probs=16.2
Q ss_pred CCEEEEEECCCCHHHHHHH
Q ss_conf 2023553047740679999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAIN 472 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN 472 (806)
|.=+.|.|..|||||--.+
T Consensus 1 MkiI~l~G~~GSGKsTva~ 19 (179)
T 3lw7_A 1 IKVILITGMPGSGKSEFAK 19 (179)
T ss_dssp -CEEEEECCTTSCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
T ss_conf 9799998999988999999
No 329
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=56.92 E-value=7.2 Score=17.01 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=17.5
Q ss_pred EEEEEECCCCHHHHHHHHHHH
Q ss_conf 235530477406799999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~ 476 (806)
.++|-|..|+|||--||..+.
T Consensus 11 KI~viG~~~vGKTsLi~r~~~ 31 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799788999999972
No 330
>1m2o_B GTP binding, GTP-binding protein SAR1; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=56.83 E-value=6.2 Score=17.51 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=18.5
Q ss_pred CCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 02023553047740679999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI 475 (806)
|-+.++|-|..|+|||--+|.+.
T Consensus 22 k~~KI~ivG~~~~GKTsLl~~l~ 44 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLK 44 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 84389999999999899999992
No 331
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=56.68 E-value=7.5 Score=16.89 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCE----EEEEEEECCEEE
Q ss_conf 5665457899999974248632----899841044244
Q gi|254780799|r 329 PKVMQNNACTLKSVLSDFGIQG----EIVNVRPGPVIT 362 (806)
Q Consensus 329 ~eeL~~nA~lLE~tL~dFGVe~----~Vv~v~pGPVVT 362 (806)
++.++...+.+.+.+++++.+. -+.=..||+|-.
T Consensus 122 ~~~l~~i~~~i~~~~~~~~~~~~~i~gigia~pG~vd~ 159 (406)
T 1z6r_A 122 LPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDT 159 (406)
T ss_dssp SCHHHHHHHHHHHHHHHTGGGCCCEEEEEEEESSEEET
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCC
T ss_conf 99999999999999996577535646998512578778
No 332
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=56.45 E-value=3.7 Score=19.23 Aligned_cols=14 Identities=36% Similarity=0.778 Sum_probs=12.5
Q ss_pred EEEEEECCCCHHHH
Q ss_conf 23553047740679
Q gi|254780799|r 456 HLLIAGTTGSGKSV 469 (806)
Q Consensus 456 HLLIAGtTGSGKSV 469 (806)
++.|.|..|||||-
T Consensus 22 ~I~i~G~pGsGKsT 35 (201)
T 2cdn_A 22 RVLLLGPPGAGKGT 35 (201)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
T ss_conf 79998999999899
No 333
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=56.37 E-value=5.2 Score=18.09 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=16.5
Q ss_pred EEEE--ECCCCHHHHHHHHHHHHH
Q ss_conf 3553--047740679999999999
Q gi|254780799|r 457 LLIA--GTTGSGKSVAINTMILSL 478 (806)
Q Consensus 457 LLIA--GtTGSGKSV~iN~iI~Sl 478 (806)
|||| |--|||||-.++.+---|
T Consensus 1 mfI~ieG~dGsGKsT~~~~L~~~L 24 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 989998998888999999999999
No 334
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ewa_A* 3ew9_A* 3etl_A* 2gdj_A*
Probab=56.32 E-value=8.3 Score=16.55 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=28.6
Q ss_pred CCEEEEEHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCEEEEEEECCC
Q ss_conf 986877634468888732----------10058899999986641423799996577
Q gi|254780799|r 589 MPYIVVVIDEMADLMMVA----------RKDIESAVQRLAQMARASGIHVIMATQRP 635 (806)
Q Consensus 589 lp~ivviiDElaDlmm~~----------~~~ve~~i~rlaq~ara~GiHli~aTqrP 635 (806)
.+.-++|||-.+.+-... ...+.....+|..+|+--++=.++..|-.
T Consensus 203 ~~~~lvviDsi~~l~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~tnq~~ 259 (322)
T 2i1q_A 203 NNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVS 259 (322)
T ss_dssp CEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEE
T ss_pred CCCCEEEEECCHHHEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 576279995315530101037850546999999999999998986492599744688
No 335
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=56.30 E-value=6.1 Score=17.56 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=17.0
Q ss_pred EEEEECCCCHHHHHHHHHHH
Q ss_conf 35530477406799999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~ 476 (806)
++|-|..|+|||-.||.++-
T Consensus 9 i~viG~~~vGKTsli~~~~~ 28 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999499999999985
No 336
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=56.08 E-value=8.4 Score=16.53 Aligned_cols=43 Identities=23% Similarity=0.310 Sum_probs=29.4
Q ss_pred HHHHHHHHHCCC-EEEEHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999999996598-5000142220011778999999999779868
Q gi|254780799|r 744 KQAVDIVLRDNK-ASISYIQRRLGIGYNRAASIIENMEEKGVIG 786 (806)
Q Consensus 744 ~~a~~~v~~~~~-~s~s~lqr~~~igy~raar~~~~~e~~giv~ 786 (806)
-++..+....++ .+.+-|-+++.+-.+.+.|.++.|++.|+|-
T Consensus 29 ~~il~~L~~~~~p~t~~eLa~~l~is~s~vs~~l~~L~~~GlV~ 72 (152)
T 1ku9_A 29 GAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVR 72 (152)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 99999999769892999999998968857999999999889989
No 337
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=55.99 E-value=8.4 Score=16.52 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=24.1
Q ss_pred HHHHHHHHCCCEEEEHHHHHH----CCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 999999965985000142220----01177899999999977986802
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRL----GIGYNRAASIIENMEEKGVIGPA 788 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~----~igy~raar~~~~~e~~giv~~~ 788 (806)
+..+++.+.+.+|.+-|..+| .+.|+--..+++.||+.|+|.-.
T Consensus 14 ~VM~~LW~~~~~t~~ei~~~l~~~~~~~~~Tv~t~L~RL~~KG~v~r~ 61 (123)
T 1okr_A 14 EVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999837997999999997512387542499999999988987887
No 338
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=55.95 E-value=6.2 Score=17.53 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=16.2
Q ss_pred EEEEEECCCCHHHHHHHHHHHH
Q ss_conf 2355304774067999999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~S 477 (806)
+.-|.|..|||||--.+.+.--
T Consensus 2 ~I~IeG~~GsGKST~~k~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999888987899999999998
No 339
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=55.90 E-value=3.6 Score=19.31 Aligned_cols=15 Identities=33% Similarity=0.709 Sum_probs=12.3
Q ss_pred EEEEECCCCHHHHHH
Q ss_conf 355304774067999
Q gi|254780799|r 457 LLIAGTTGSGKSVAI 471 (806)
Q Consensus 457 LLIAGtTGSGKSV~i 471 (806)
++.-|.||||||=-+
T Consensus 84 i~aYGqtGSGKTyTm 98 (330)
T 2h58_A 84 IFAYGQTGAGKTYTM 98 (330)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred EECCCCCCCCCCEEC
T ss_conf 986300689986773
No 340
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=55.83 E-value=6.5 Score=17.34 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=26.0
Q ss_pred EECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 54100202355304774067999999999998299578478885231
Q gi|254780799|r 449 ADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 449 ~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
.++.+==.+-|-|.+|||||--++.|.- || |.+ ==|+||=+
T Consensus 42 l~I~~Ge~vaivG~sGsGKSTLl~li~G--l~---~~~-G~I~i~g~ 82 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTLLSAFLR--LL---NTE-GEIQIDGV 82 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHT--CS---EEE-EEEEESSC
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC--CC---CCC-EEEEECCE
T ss_conf 9983998999999999829999999857--88---897-49999999
No 341
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=55.67 E-value=6.6 Score=17.30 Aligned_cols=43 Identities=23% Similarity=0.469 Sum_probs=28.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHH---------EEEEEECCCHHHHHHCC
Q ss_conf 355304774067999999999998299578---------47888523100111027
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQ---------CRLIMIDPKMLELSVYD 503 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~e---------vkliliDPK~vEls~Y~ 503 (806)
++|-|..|+|||--+|.++. +.-+++ .+-+.+|-+.+++.+++
T Consensus 31 IviiGd~~vGKTsLi~r~~~----~~f~~~~~pti~~~~~~~~~~~~~~i~l~iwD 82 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAK----DCFPENYVPTVFENYTASFEIDTQRIELSLWD 82 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHH----SCCCSSCCCCSEEEEEEEEESSSSEEEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHH----CCCCCCCCCEEEEEEEEEEEECCEEEEEEEEE
T ss_conf 99999899789999999973----99998868815688899999999899999998
No 342
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=55.09 E-value=8.7 Score=16.41 Aligned_cols=74 Identities=14% Similarity=0.136 Sum_probs=52.4
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 0235530477406799999999999829957847888523100111027703431223343045668999999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEM 530 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EM 530 (806)
=-.||=|.-|+||+|.+..|+-++--++.=..|=.++||=..-|..-+..-. -+-||...-....+.++.+.+|
T Consensus 176 QR~lIvg~~g~GKT~ll~~ia~~~~~n~~~v~~ii~li~er~eev~~~~~~~--~~~vvast~d~p~~~~~~~a~~ 249 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIREST--NAIVIAAPFDMPPDKQVKVAEL 249 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSC--CSEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHHH
T ss_conf 7678866888776799999999997379970999997250015554444324--7404530267788988999999
No 343
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=54.98 E-value=7.2 Score=17.03 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=18.7
Q ss_pred CEEEEEECCCCHHHHHHHHHH
Q ss_conf 023553047740679999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI 475 (806)
.+.+|.|-.+.|||-.||++.
T Consensus 100 ~~i~vvG~PNVGKSslIN~L~ 120 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLK 120 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 479997788755899999985
No 344
>1yzq_A Small GTP binding protein RAB6 isoform; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.78A {Homo sapiens} SCOP: c.37.1.8 PDB: 3cwz_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=54.86 E-value=7.5 Score=16.90 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=18.6
Q ss_pred EEEEEECCCCHHHHHHHHHHH
Q ss_conf 235530477406799999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~ 476 (806)
+++|-|..|+|||-.||.++.
T Consensus 8 KI~vvG~~~vGKSsLi~~~~~ 28 (170)
T 1yzq_A 8 KLVFLGEQSVGKTSLITRFMY 28 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999499799999999983
No 345
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=54.84 E-value=6.7 Score=17.27 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=16.8
Q ss_pred EEEEECCCCHHHHHHHHHHH
Q ss_conf 35530477406799999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~ 476 (806)
+++-|..|+|||-.+|.++.
T Consensus 8 i~viG~~~vGKTsli~~~~~ 27 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899098999999983
No 346
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=54.84 E-value=3.9 Score=19.04 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=13.4
Q ss_pred EEEEEECCCCHHHHHH
Q ss_conf 2355304774067999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAI 471 (806)
Q Consensus 456 HLLIAGtTGSGKSV~i 471 (806)
-++.-|.|||||+--+
T Consensus 83 ti~aYGqtgSGKTyT~ 98 (355)
T 1goj_A 83 TVFAYGQTGAGKSYTM 98 (355)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEECCCCCCCCCEEE
T ss_conf 6990576689874451
No 347
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=54.72 E-value=3.3 Score=19.59 Aligned_cols=19 Identities=42% Similarity=0.733 Sum_probs=14.0
Q ss_pred EEEEEECCCCHHHHHHHHH
Q ss_conf 2355304774067999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~i 474 (806)
=.-|+|-+|||||--++.+
T Consensus 22 ~I~IeG~~GsGKST~~~~L 40 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHF 40 (230)
T ss_dssp EEEEECSTTSCHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9998899987689999999
No 348
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} SCOP: a.4.5.50
Probab=54.66 E-value=8.8 Score=16.37 Aligned_cols=43 Identities=7% Similarity=0.108 Sum_probs=35.3
Q ss_pred HHH-HHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 999-9996598500014222001177899999999977986802
Q gi|254780799|r 746 AVD-IVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPA 788 (806)
Q Consensus 746 a~~-~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~ 788 (806)
+.. ++...+..|.+=|.+++.+--+...|+++.||+.|+|-..
T Consensus 26 iL~~L~~~~~~~t~~eia~~~~~~~~tvs~~l~~L~~~GlV~r~ 69 (109)
T 2d1h_A 26 VLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp HHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 99999975989899999999897885899999999988997985
No 349
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=54.61 E-value=8.8 Score=16.36 Aligned_cols=105 Identities=8% Similarity=0.036 Sum_probs=42.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHCCCCCHHHHC
Q ss_conf 34468888732100588999999866414237999965777535543554110251587645866421233886457865
Q gi|254780799|r 596 IDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQGAEQLL 675 (806)
Q Consensus 596 iDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtild~~gae~Ll 675 (806)
..|+|+-+=++...|-.-|.||-...=-.|.|.++..+ |-+.+...-+.|.-...++.-++.- ++.|-
T Consensus 20 ~~eiA~~lglS~~tv~~Ri~rL~~~GvI~~~~~~id~~-----------~lg~~~~a~i~v~~~~~~~~~~~~~-~~~l~ 87 (162)
T 3i4p_A 20 VADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPV-----------KVNTKVTVFVSIRTASHSIEWLKRF-SEVVS 87 (162)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTT-----------TTTCCEEEEEEEECCSCCHHHHHHH-HHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEEECCC-----------CCCCCEEEEEEEEECCCCHHHHHHH-HHHHH
T ss_conf 99999998929999999999998479823237850664-----------5546479999998523456779999-99986
Q ss_pred CCCCEEEEC--CCCCEEEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 887547736--8983258883348988999999999712
Q gi|254780799|r 676 GQGDMLYMT--GGGRVQRIHGPFVSDIEVEKVVSHLKTQ 712 (806)
Q Consensus 676 g~gdml~~~--~~~~~~r~~g~~v~~~ev~~v~~~~~~q 712 (806)
+.-...+.- .|.-=.-++..+=+.++.+++++-+...
T Consensus 88 ~~p~V~~~~~~tG~~dl~~~v~~~d~~~l~~~~~~~~~~ 126 (162)
T 3i4p_A 88 EFPEVVEFYRMSGDVDYLLRVVVPDIAAYDAFYKRMIAK 126 (162)
T ss_dssp HCTTEEEEEECCSSCSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HCCCEEEEEEECCCCCEEEEEEECCHHHHHHHHHHHHCC
T ss_conf 197489999963899989999989999999999997367
No 350
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=54.45 E-value=8.9 Score=16.34 Aligned_cols=54 Identities=15% Similarity=0.087 Sum_probs=38.3
Q ss_pred HHHHHHHHCCCEEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEE
Q ss_conf 9999999659850001422200117789999999997798680227-88726731
Q gi|254780799|r 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILI 798 (806)
Q Consensus 745 ~a~~~v~~~~~~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~ 798 (806)
.++..+-+.+..+.+-|.+++.+--.-+.|+++.||++|+|--... .-.|.+.+
T Consensus 41 ~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~i~~L~~~g~v~r~~~~~D~R~~~l 95 (143)
T 3oop_A 41 SVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLL 95 (143)
T ss_dssp HHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEE
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEE
T ss_conf 9999998689979999999989699799999999975677434105899894476
No 351
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreductase, blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=54.38 E-value=8.9 Score=16.33 Aligned_cols=19 Identities=5% Similarity=0.034 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999
Q gi|254780799|r 78 AIQFFGIASVFFLPPPTMW 96 (806)
Q Consensus 78 L~~lFG~~Ayllpl~Ll~~ 96 (806)
=+.+||..+|+..+++.+.
T Consensus 71 Plsl~G~~~y~~~~~l~~~ 89 (291)
T 3kp9_A 71 PTAAVGLLGFLGVLALAVL 89 (291)
T ss_dssp EHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHH
T ss_conf 6589999999999999999
No 352
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=54.19 E-value=4.2 Score=18.77 Aligned_cols=15 Identities=33% Similarity=0.720 Sum_probs=12.2
Q ss_pred EEEEECCCCHHHHHH
Q ss_conf 355304774067999
Q gi|254780799|r 457 LLIAGTTGSGKSVAI 471 (806)
Q Consensus 457 LLIAGtTGSGKSV~i 471 (806)
++.-|.||||||=-+
T Consensus 107 I~aYGqTGSGKTyTm 121 (358)
T 2nr8_A 107 IMCYGQTGAGKTYTM 121 (358)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCCCEEE
T ss_conf 999547889964695
No 353
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genomics consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum 3D7}
Probab=53.89 E-value=7.1 Score=17.06 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=21.1
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEE
Q ss_conf 35530477406799999999999829957847888
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIM 491 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evklil 491 (806)
+.|.|.+||||+--++.+ .+..|+..++..
T Consensus 26 IVl~GPSGsGK~tL~~~L-----~~~~p~~~~~~v 55 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIKKL-----LNEFPNYFYFSV 55 (218)
T ss_dssp EEEECSTTSSHHHHHHHH-----HHHSTTTEEECC
T ss_pred EEEECCCCCCHHHHHHHH-----HHHCCCCEEEEE
T ss_conf 999999999999999999-----971987767324
No 354
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=53.86 E-value=7.5 Score=16.89 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=17.5
Q ss_pred EEEEEECCCCHHHHHHHHHHH
Q ss_conf 235530477406799999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~ 476 (806)
.+++.|..|+|||-.||.++.
T Consensus 23 KI~lvG~~~vGKTsLi~~l~~ 43 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999998999999977
No 355
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=53.81 E-value=6.9 Score=17.18 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=19.4
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 55304774067999999999998299578478885231
Q gi|254780799|r 458 LIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 458 LIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
.|+|..|||||--.|-+- +.-+ .+.++=.|.-
T Consensus 25 ~I~G~~GSGKTTla~~L~-----~~l~-~~~vi~~d~~ 56 (207)
T 2qt1_A 25 GISGVTNSGKTTLAKNLQ-----KHLP-NCSVISQDDF 56 (207)
T ss_dssp EEEESTTSSHHHHHHHHH-----TTST-TEEEEEGGGG
T ss_pred EEECCCCCCHHHHHHHHH-----HHCC-CCEEEEEECE
T ss_conf 998989885999999999-----9859-9849984120
No 356
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=53.78 E-value=4.8 Score=18.37 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=26.2
Q ss_pred CEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCC
Q ss_conf 868776344688887321005889999998664142379999657775
Q gi|254780799|r 590 PYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSV 637 (806)
Q Consensus 590 p~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsv 637 (806)
+.-+++|||.---+ -+.-.+..+..|.+.++ ..-.|++|.+|..
T Consensus 241 ~~~~~lidEpe~~L--hp~~~~~l~~~l~~~~~--~~QvIiTTHsp~~ 284 (322)
T 1e69_A 241 PSPFYVLDEVDSPL--DDYNAERFKRLLKENSK--HTQFIVITHNKIV 284 (322)
T ss_dssp CCSEEEEESCCSSC--CHHHHHHHHHHHHHHTT--TSEEEEECCCTTG
T ss_pred CCCEEEEECCCCCC--CHHHHHHHHHHHHHHCC--CCEEEEEECCHHH
T ss_conf 67748760643026--99999999999998575--8879999889999
No 357
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=53.73 E-value=8.9 Score=16.34 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=24.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 2355304774067999999999998299578478885231
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
++|+.|..|+|||-...++.-.+ .+.++-||+.
T Consensus 51 giLl~GppGtGKT~la~aia~e~-------~~~~~~i~~~ 83 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA-------RVPFITASGS 83 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT-------TCCEEEEEHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHC-------CCCEEEEEHH
T ss_conf 57877787656279999999763-------9976998869
No 358
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1}
Probab=53.69 E-value=9.1 Score=16.26 Aligned_cols=58 Identities=21% Similarity=0.243 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHH---CC------C-EEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCC
Q ss_conf 87777038999999996---59------8-50001422200117789999999997798680227887
Q gi|254780799|r 736 SSVADDLYKQAVDIVLR---DN------K-ASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGK 793 (806)
Q Consensus 736 ~~~~d~l~~~a~~~v~~---~~------~-~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g~~~ 793 (806)
..+.-|+|+|.++.+.. ++ + -|..-|..+|.++-+-.-+-+.+||++|+|--..|+|-
T Consensus 6 ~~~k~P~y~qi~~~i~~~I~~g~l~~G~~LPser~La~~~~vSr~tVr~Al~~L~~~Gli~~~~g~G~ 73 (126)
T 3by6_A 6 ITQKRPVYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGKGT 73 (126)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEE
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEE
T ss_conf 67887799999999999998599999299904999999979898999999999998892799738158
No 359
>3hu5_A Isochorismatase family protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.50A {Desulfovibrio vulgaris str}
Probab=53.65 E-value=9.1 Score=16.25 Aligned_cols=107 Identities=17% Similarity=0.232 Sum_probs=53.2
Q ss_pred EEEEHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCC-HHHHHCCCCEEEEEECCCCCCH
Q ss_conf 87763446888873-------210058899999986641423799996577753554-3554110251587645866421
Q gi|254780799|r 592 IVVVIDEMADLMMV-------ARKDIESAVQRLAQMARASGIHVIMATQRPSVDVIT-GTIKANFPTRISFQVSSKIDSR 663 (806)
Q Consensus 592 ivviiDElaDlmm~-------~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvit-g~ikan~p~riaf~v~s~~dSr 663 (806)
=+||||==-|..-- ...++-..|.||.+.||+.|++.|..++...-|=-. ...+-... ..--..
T Consensus 10 ALlvID~Q~~f~~~~~~~~~~~~~~ii~~i~~L~~~ar~~g~pVi~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 81 (204)
T 3hu5_A 10 ALAIIDMQNDFVLPGAPACVEGAMGTVPVIAGLLAKARAEGWMVLHVVRAHRADGSDAEKSREHLF--------LEGGGL 81 (204)
T ss_dssp EEEEECCBHHHHSTTSTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEECCBCTTSTTSCGGGGGGG--------SSSCCS
T ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCC--------CCCCCC
T ss_conf 899983706815899744677878999999999999998599679998515788754210233445--------656676
Q ss_pred HHCCCCCHHHH----CCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 23388645786----588754773689832588833489889999999997128974
Q gi|254780799|r 664 TILGEQGAEQL----LGQGDMLYMTGGGRVQRIHGPFVSDIEVEKVVSHLKTQGEAK 716 (806)
Q Consensus 664 tild~~gae~L----lg~gdml~~~~~~~~~r~~g~~v~~~ev~~v~~~~~~q~~~~ 716 (806)
.+-+..|+|=. --.+|..+.. +.-+||.+. .+-.+++.++-.+
T Consensus 82 ~~~gt~g~el~~~l~p~~~d~vi~K------~~~saF~~t----~L~~~L~~~gi~~ 128 (204)
T 3hu5_A 82 CVAGTPGAEIVAGLEPASGETVLVK------TRFSAFMGT----ECDMLLRRRGVDT 128 (204)
T ss_dssp SBTTSGGGSBCTTCCCCTTCEEEEC------SSSSTTTTS----SHHHHHHHTTCCE
T ss_pred CCCCCCCHHHCCCCCCCCCCEEEEE------CCCCCCCCC----HHHHHHHHCCCCE
T ss_conf 6799964442510078888668873------112553413----4999986369832
No 360
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP- binding, coiled coil, cytoplasm, disease mutation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=53.59 E-value=5.6 Score=17.85 Aligned_cols=20 Identities=40% Similarity=0.813 Sum_probs=16.6
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 23553047740679999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI 475 (806)
.++|-|..|+|||-.+|.++
T Consensus 4 KivivG~~~~GKTsli~~~~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999939968899999997
No 361
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens}
Probab=53.49 E-value=4.4 Score=18.63 Aligned_cols=15 Identities=47% Similarity=0.749 Sum_probs=11.7
Q ss_pred EEEEECCCCHHHHHH
Q ss_conf 355304774067999
Q gi|254780799|r 457 LLIAGTTGSGKSVAI 471 (806)
Q Consensus 457 LLIAGtTGSGKSV~i 471 (806)
++.-|.|||||+=-+
T Consensus 96 i~aYGqtgSGKT~Tm 110 (354)
T 3gbj_A 96 IFAYGQTGSGKSYTM 110 (354)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEECCCCCCCCCCCC
T ss_conf 982467789986267
No 362
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=53.30 E-value=7.9 Score=16.71 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=18.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHH
Q ss_conf 0235530477406799999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~ 476 (806)
++.++.|-+|+|||--+|.+..
T Consensus 8 ~~I~ivG~~~~GKTsLl~~l~~ 29 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 9899998999888999999972
No 363
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helicase, alternative splicing, ATP-binding; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=53.28 E-value=4.6 Score=18.46 Aligned_cols=19 Identities=16% Similarity=0.436 Sum_probs=14.9
Q ss_pred EEEEEECCCCHHHHHHHHH
Q ss_conf 2355304774067999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~i 474 (806)
+++++.-|||||+.|.=--
T Consensus 69 dvi~~A~TGSGKTlayllp 87 (237)
T 3bor_A 69 DVIAQAQSGTGKTATFAIS 87 (237)
T ss_dssp CEEECCCSSHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCEEECC
T ss_conf 8899798888982168645
No 364
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=53.21 E-value=7.7 Score=16.81 Aligned_cols=47 Identities=26% Similarity=0.472 Sum_probs=28.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHH---HHCCH---HHEEEEEECCCHHHHHHCC
Q ss_conf 35530477406799999999999---82995---7847888523100111027
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLL---YRMTP---AQCRLIMIDPKMLELSVYD 503 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlL---yk~~P---~evkliliDPK~vEls~Y~ 503 (806)
++|-|..|+|||-.||.++-.-. |..++ .-.+-+.++-+...+.+++
T Consensus 13 I~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D 65 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 65 (186)
T ss_dssp EEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEE
T ss_conf 99999899499999999983999988688221330068996599799999997
No 365
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=53.18 E-value=5.6 Score=17.84 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=32.4
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHH---HHHCCH---HHEEEEEECCCHHHHHHCC
Q ss_conf 023553047740679999999999---982995---7847888523100111027
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSL---LYRMTP---AQCRLIMIDPKMLELSVYD 503 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~Sl---Lyk~~P---~evkliliDPK~vEls~Y~ 503 (806)
-++++-|..|+|||-.||.++-.- -|..++ ...+.+..+.+.++|.+++
T Consensus 27 ~KIvvlG~~~vGKTSli~rl~~~~f~~~~~~~~~~~~~~~~~~~~~~~v~l~iwD 81 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWD 81 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEE
T ss_conf 8999999999799999999953927776576215457889986234589999997
No 366
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=53.16 E-value=5.9 Score=17.66 Aligned_cols=23 Identities=9% Similarity=0.190 Sum_probs=18.6
Q ss_pred EEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 25888334898899999999971
Q gi|254780799|r 689 VQRIHGPFVSDIEVEKVVSHLKT 711 (806)
Q Consensus 689 ~~r~~g~~v~~~ev~~v~~~~~~ 711 (806)
.++.+|+.++|+|+..|++|+.+
T Consensus 57 M~~~~ga~i~~~e~~~I~~YL~~ 79 (81)
T 2blf_B 57 MIKVYHAPVDEADAKAIADYLAK 79 (81)
T ss_dssp HHHTSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99754999888889999999997
No 367
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=53.08 E-value=4.3 Score=18.70 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=14.7
Q ss_pred EEEEEECCCCHHHHHHHH
Q ss_conf 235530477406799999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINT 473 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~ 473 (806)
-++.-|.||||||=.+..
T Consensus 80 ~i~ayG~tgSGKTyT~~G 97 (325)
T 1bg2_A 80 TIFAYGQTSSGKTHTMEG 97 (325)
T ss_dssp EEEEECSTTSSHHHHHTB
T ss_pred CEEEECCCCCCCCEECCC
T ss_conf 167330258898313356
No 368
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=53.03 E-value=7.4 Score=16.92 Aligned_cols=20 Identities=25% Similarity=0.669 Sum_probs=15.8
Q ss_pred EEEEECCCCHHHHHHHHHHH
Q ss_conf 35530477406799999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~ 476 (806)
+.|.|.+|||||.-.+.+.-
T Consensus 7 Ivi~GpsGsGK~Tl~~~L~~ 26 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999999999999998
No 369
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=52.58 E-value=7.6 Score=16.84 Aligned_cols=40 Identities=18% Similarity=0.107 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 0366135332001245556325665457899999974248632899
Q gi|254780799|r 308 VLPSKEILSTSQSPVNQMTFSPKVMQNNACTLKSVLSDFGIQGEIV 353 (806)
Q Consensus 308 kLPsLdLL~~~~~~~~~~~~s~eeL~~nA~lLE~tL~dFGVe~~Vv 353 (806)
.=|.+=|||+|.+ ..|.++.+...+.|.+ |.+.|.-.=++
T Consensus 175 ~~P~lLlLDEPT~-----~LD~~~~~~l~~~l~~-l~~~g~tiliI 214 (538)
T 1yqt_A 175 RNATFYFFDEPSS-----YLDIRQRLNAARAIRR-LSEEGKSVLVV 214 (538)
T ss_dssp SCCSEEEEESTTT-----TCCHHHHHHHHHHHHH-HHHTTCEEEEE
T ss_pred CCCCEEECCCCCC-----CCCHHHHHHHHHHHHH-HCCCCCCEEEE
T ss_conf 5996662468856-----6999999999999886-30123517897
No 370
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome assembly, GTP-binding; HET: GNP; 1.90A {Aquifex aeolicus}
Probab=52.57 E-value=6.5 Score=17.37 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.1
Q ss_pred EEEEECCCCHHHHHHHHHHHH
Q ss_conf 355304774067999999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~S 477 (806)
.=|.|-|.+|||--+|++.=+
T Consensus 13 VaivG~pNvGKStLiN~L~g~ 33 (308)
T 3iev_A 13 VAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998499999999689
No 371
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=52.49 E-value=8.3 Score=16.58 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=16.1
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 23553047740679999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI 475 (806)
.++|-|..|+|||--||.++
T Consensus 5 KI~v~G~~~vGKTsLi~~~~ 24 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999989999999996
No 372
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=52.45 E-value=9.5 Score=16.12 Aligned_cols=47 Identities=30% Similarity=0.456 Sum_probs=31.4
Q ss_pred EEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHH
Q ss_conf 7854100202355304774067999999999998299578478885231001
Q gi|254780799|r 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLE 498 (806)
Q Consensus 447 vv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vE 498 (806)
+-.++.+==.+-|.|..|||||.-+++| +.|+ +|+.=+ |++|-|-++
T Consensus 27 isl~i~~Gei~~liG~nGaGKSTLl~~i-~Gl~---~p~~G~-I~~~g~~i~ 73 (275)
T 3gfo_A 27 INMNIKRGEVTAILGGNGVGKSTLFQNF-NGIL---KPSSGR-ILFDNKPID 73 (275)
T ss_dssp EEEEEETTSEEEEECCTTSSHHHHHHHH-TTSS---CCSEEE-EEETTEECC
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHH-HCCC---CCCCEE-EEECCEECC
T ss_conf 0789889989999999998399999999-7498---888628-999999987
No 373
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, structural genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=52.37 E-value=6.6 Score=17.31 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=18.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 355304774067999999999998
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLY 480 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLy 480 (806)
+.|.|..|||||--.+.+--.|-.
T Consensus 25 IgI~G~~gSGKSTla~~L~~~l~~ 48 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 998898989999999999999734
No 374
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=52.36 E-value=6 Score=17.60 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=20.8
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCC
Q ss_conf 325888334898899999999971289
Q gi|254780799|r 688 RVQRIHGPFVSDIEVEKVVSHLKTQGE 714 (806)
Q Consensus 688 ~~~r~~g~~v~~~ev~~v~~~~~~q~~ 714 (806)
....-.+.-+||+||..|+.|+++|..
T Consensus 70 ~~m~~~~~~Lsdeei~~v~aYv~s~a~ 96 (105)
T 2ce0_A 70 RGQCTFGPRLQDEEIKLLAEFVKFQAD 96 (105)
T ss_dssp GGGBCSSCCBCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 357875565888999999999999876
No 375
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=52.35 E-value=8.1 Score=16.64 Aligned_cols=48 Identities=27% Similarity=0.337 Sum_probs=32.5
Q ss_pred EEEEEECCCCHHHHHHHHHHHHH---HHHCCHH--HEEEEEECCCHHHHHHCC
Q ss_conf 23553047740679999999999---9829957--847888523100111027
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSL---LYRMTPA--QCRLIMIDPKMLELSVYD 503 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~Sl---Lyk~~P~--evkliliDPK~vEls~Y~ 503 (806)
-+++-|..|+|||-.||.++-+= -|..++. ..|.+.+|.+.+++.+++
T Consensus 11 Ki~ivG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d 63 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILD 63 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEE
T ss_conf 99999979989999999997099988769967077889999898789998765
No 376
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=52.21 E-value=4.5 Score=18.53 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=12.6
Q ss_pred EEEEEECCCCHHHHHH
Q ss_conf 2355304774067999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAI 471 (806)
Q Consensus 456 HLLIAGtTGSGKSV~i 471 (806)
-++.-|.|||||+--+
T Consensus 103 ti~aYGqTGSGKTyTm 118 (373)
T 2wbe_C 103 TVFAYGQTGTGKTHTM 118 (373)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCCCEEC
T ss_conf 6996213689996660
No 377
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=52.21 E-value=4.5 Score=18.57 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 334304566899999999999
Q gi|254780799|r 512 VVTNPQKAVTVLKWLVCEMEE 532 (806)
Q Consensus 512 VvTd~~kA~~aL~w~V~EMe~ 532 (806)
+=-.|-+|+..+...+.+-|+
T Consensus 318 ~G~yPveaV~~m~~I~~~aE~ 338 (587)
T 2e28_A 318 AGQYPVEAVKTMHQIALRTEQ 338 (587)
T ss_dssp TCSCHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHH
T ss_conf 675878999999999999985
No 378
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=52.18 E-value=9.6 Score=16.09 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=28.2
Q ss_pred CC-EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCH
Q ss_conf 20-23553047740679999999999982995784788852310
Q gi|254780799|r 454 MP-HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKM 496 (806)
Q Consensus 454 MP-HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~ 496 (806)
+| ++|+.|.-|+|||....++.-.+ .+.++-|++..
T Consensus 38 ~~~gvLL~GppGtGKT~la~aia~~~-------~~~~~~v~~~~ 74 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA-------QVPFLAMAGAE 74 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH-------TCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCC-------CCCEEEEEHHH
T ss_conf 99726886899898647999997335-------98669988799
No 379
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3add_A* 3adc_A* 3adb_A*
Probab=52.17 E-value=8.1 Score=16.66 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=18.8
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 020235530477406799999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~ 476 (806)
++--+++.|-.|||||-.-+.+--
T Consensus 3 ~~~LIil~G~PGSGKST~A~~L~~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 858999889999988999999999
No 380
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=51.97 E-value=4.8 Score=18.34 Aligned_cols=16 Identities=44% Similarity=0.717 Sum_probs=11.9
Q ss_pred EEEEEECCCCHHHHHH
Q ss_conf 2355304774067999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAI 471 (806)
Q Consensus 456 HLLIAGtTGSGKSV~i 471 (806)
-++.-|.|||||+--+
T Consensus 82 ti~aYGqtgSGKTyTm 97 (369)
T 3cob_A 82 CIFAYGQTGSGKTFTI 97 (369)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEECCCCCCCCCCEEE
T ss_conf 2772676788883343
No 381
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=51.97 E-value=6.1 Score=17.58 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=26.2
Q ss_pred HHCCCCCHHHHCCCCCEEEECCCCCEEEEEECCCC--HHHHHHHHHHHHHCC---CCCCCCCC
Q ss_conf 23388645786588754773689832588833489--889999999997128---97421100
Q gi|254780799|r 664 TILGEQGAEQLLGQGDMLYMTGGGRVQRIHGPFVS--DIEVEKVVSHLKTQG---EAKYIDIK 721 (806)
Q Consensus 664 tild~~gae~Llg~gdml~~~~~~~~~r~~g~~v~--~~ev~~v~~~~~~q~---~~~y~~~~ 721 (806)
++.|-.|+|++-..+. +.-..-.++++. -.-..+|+..+.... -..|.+..
T Consensus 231 ~~vDLAGsE~~~~~~~-------~~~~~~e~~~iN~SL~~L~~vi~aL~~~~~~~~iPyR~Sk 286 (349)
T 1t5c_A 231 NLVDLAGSERAAQTGA-------AGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSK 286 (349)
T ss_dssp EEEECCCGGGTC--------------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSH
T ss_pred EEEECCCCCCCCCCCC-------CCCEEHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 7421156632343578-------6524010233562099999999998637889978774688
No 382
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=51.86 E-value=9.7 Score=16.05 Aligned_cols=54 Identities=17% Similarity=0.208 Sum_probs=37.7
Q ss_pred HHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCC-----CCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999982995784788852310011102770343122-----334304-5668999999999999999987
Q gi|254780799|r 473 TMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTP-----VVTNPQ-KAVTVLKWLVCEMEERYQKMSK 539 (806)
Q Consensus 473 ~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~p-----VvTd~~-kA~~aL~w~V~EMe~RY~l~a~ 539 (806)
-+|-+-|++ || .|++.-|. +||-+.+ |-|+.+ .+..+|+.+|+++-.-|+-+.+
T Consensus 43 NlL~~~L~~-----------~~-~V~fagY~-ipHPl~~~i~irI~t~~~~~p~~~l~~a~~~li~~~~~i~~ 102 (123)
T 3h0g_K 43 NMLANQLLS-----------DE-RVLFAGYK-VPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLITHLEEIKV 102 (123)
T ss_dssp HHHHHTGGG-----------ST-TCSCBCCB-CSCTTSCEEEEEEECCSSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-----------CC-CCEEEEEE-CCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999953-----------99-83498866-79998880389999699999999999999999999999999
No 383
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.60A {Bacillus subtilis} SCOP: b.82.2.11
Probab=51.73 E-value=4.9 Score=18.29 Aligned_cols=13 Identities=46% Similarity=0.792 Sum_probs=8.3
Q ss_pred HCCCCCEEEECCC
Q ss_conf 6588754773689
Q gi|254780799|r 674 LLGQGDMLYMTGG 686 (806)
Q Consensus 674 Llg~gdml~~~~~ 686 (806)
.|.-|||||+|+|
T Consensus 221 ~l~pGD~LyiP~g 233 (342)
T 1vrb_A 221 NLTPGTMLYLPRG 233 (342)
T ss_dssp EECTTCEEEECTT
T ss_pred EECCCCEEEECCC
T ss_conf 9769988997899
No 384
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=51.59 E-value=7.5 Score=16.89 Aligned_cols=85 Identities=13% Similarity=0.221 Sum_probs=48.3
Q ss_pred CEEEEEHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCC----CCHH
Q ss_conf 868776344-68888732100588999999866414237999965777535543554110251587645866----4212
Q gi|254780799|r 590 PYIVVVIDE-MADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKI----DSRT 664 (806)
Q Consensus 590 p~ivviiDE-laDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~----dSrt 664 (806)
|-| ++.|| ++-|=.... +..+..|.+.-+.-|+-.|+.|..+.- =..+-.||++--.-++ .-..
T Consensus 160 P~i-lllDEP~s~LD~~~~---~~i~~~l~~~~~~~g~t~i~vTHd~~e-------a~~ladri~vm~~G~i~~~g~~~e 228 (372)
T 1v43_A 160 PDV-LLMDEPLSNLDAKLR---VAMRAEIKKLQQKLKVTTIYVTHDQVE-------AMTMGDRIAVMNRGQLLQIGSPTE 228 (372)
T ss_dssp CSE-EEEESTTTTSCHHHH---HHHHHHHHHHHHHHTCEEEEEESCHHH-------HHHHCSEEEEEETTEEEEEECHHH
T ss_pred CCE-EEECCCCCCCCHHHH---HHHHHHHHHHHHHHCCEEEEECCCHHH-------HHHHCCEEEEEECCEEEEECCHHH
T ss_conf 978-987699877898999---999999999988519889999898999-------998699999998999999859999
Q ss_pred HCCCC---CHHHHCCCCCEEEECC
Q ss_conf 33886---4578658875477368
Q gi|254780799|r 665 ILGEQ---GAEQLLGQGDMLYMTG 685 (806)
Q Consensus 665 ild~~---gae~Llg~gdml~~~~ 685 (806)
|++.+ -.-+++|..-|-++++
T Consensus 229 l~~~P~~~~va~~~G~~~~N~~~~ 252 (372)
T 1v43_A 229 VYLRPNSVFVATFIGAPEMNILEV 252 (372)
T ss_dssp HHHCCSBHHHHHHSSSSCCEEEEE
T ss_pred HHHCCCCHHHHHHHCCCCCEEEEE
T ss_conf 985899989999709997226999
No 385
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=51.56 E-value=5.9 Score=17.65 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=13.8
Q ss_pred EEEEECCCCHHHHHHHH
Q ss_conf 35530477406799999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINT 473 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~ 473 (806)
++.-|.||||||-.+..
T Consensus 93 i~aYGqTGSGKTyTm~G 109 (366)
T 2zfi_A 93 IFAYGQTGAGKSYTMMG 109 (366)
T ss_dssp EEEECSTTSSHHHHHTB
T ss_pred EEEECCCCCCCCEEECC
T ss_conf 99524678998767246
No 386
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=51.54 E-value=7.5 Score=16.88 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=25.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 2355304774067999999999998299578478885231
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
++||-|-||+||.++=.+|=-. +|..=.||-||--
T Consensus 154 ~VLi~GEsGtGKe~~Ar~iH~~-----S~r~~pfv~vnc~ 188 (368)
T 3dzd_A 154 PVLITGESGTGKEIVARLIHRY-----SGRKGAFVDLNCA 188 (368)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH-----HCCCSCEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHH-----CCCCCCCEEEECC
T ss_conf 5899889985889999999971-----7888998277568
No 387
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=51.49 E-value=3.3 Score=19.56 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=18.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 35530477406799999999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLL 479 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlL 479 (806)
-..+|..|.|||--||+++=.+-
T Consensus 176 sv~~G~SGVGKSSLiN~L~~~~~ 198 (307)
T 1t9h_A 176 TVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp EEEEESHHHHHHHHHHHHCC---
T ss_pred EEEECCCCCCHHHHHHCCCCHHC
T ss_conf 99999898558889751386000
No 388
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=51.42 E-value=4.7 Score=18.42 Aligned_cols=162 Identities=19% Similarity=0.293 Sum_probs=75.3
Q ss_pred EECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHH------HH-----------HCCCCHHHHCC
Q ss_conf 54100202355304774067999999999998299578478885231001------11-----------02770343122
Q gi|254780799|r 449 ADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLE------LS-----------VYDGIPNLLTP 511 (806)
Q Consensus 449 ~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vE------ls-----------~Y~~iPHLl~p 511 (806)
.++.+==-+=|-|..|||||..++.|-- |+ +|++=+ |.+|-|-+. +. -|.=.|||
T Consensus 26 l~v~~Ge~~~i~GpsGsGKSTllr~iaG--l~--~p~~G~-I~~~g~~i~~~~~~~~~~~~r~ig~vfQ~~~L~p~l--- 97 (353)
T 1oxx_K 26 INIENGERFGILGPSGAGKTTFMRIIAG--LD--VPSTGE-LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL--- 97 (353)
T ss_dssp EEECTTCEEEEECSCHHHHHHHHHHHHT--SS--CCSEEE-EEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS---
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC--CC--CCCCEE-EEECCEECCCCCHHHHHHHHCCCEEECCCCCCCCCC---
T ss_conf 8988998999999999759999999973--99--988619-999999998887455158637870877643457789---
Q ss_pred CCCCHHHHHHHHHH---HHHHHHHHH-HHHHHCC--------CCCHHHHH-HHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33430456689999---999999999-9998708--------99689999-99998874478667754467765454322
Q gi|254780799|r 512 VVTNPQKAVTVLKW---LVCEMEERY-QKMSKIG--------VRNIDGFN-LKVAQYHNTGKKFNRTVQTGFDRKTGEAI 578 (806)
Q Consensus 512 VvTd~~kA~~aL~w---~V~EMe~RY-~l~a~~~--------vRni~~yN-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (806)
|=-...+..|+. --+|+++|- +++...| .+.+.|=. +|+.-|++-
T Consensus 98 --tV~eNi~~~l~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGq~QRvalARaL-------------------- 155 (353)
T 1oxx_K 98 --TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARAL-------------------- 155 (353)
T ss_dssp --CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH--------------------
T ss_pred --CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHH--------------------
T ss_conf --0999986676406889999999999998651827687388432899997899998765--------------------
Q ss_pred CCCCCCCCCCCCEEEEEHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEEC
Q ss_conf 23322323469868776344-68888732100588999999866414237999965777535543554110251587645
Q gi|254780799|r 579 YETEHFDFQHMPYIVVVIDE-MADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVS 657 (806)
Q Consensus 579 ~~~~~~~~~~lp~ivviiDE-laDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~ 657 (806)
-.=|-| ++-|| ++-|= ++--+....-|.+..|..|+-.|++|.-+.. =..+--||+.--.
T Consensus 156 --------~~~P~l-lllDEP~s~LD---~~~~~~l~~~i~~l~~~~g~t~i~vTHd~~e-------a~~~~dri~vm~~ 216 (353)
T 1oxx_K 156 --------VKDPSL-LLLDEPFSNLD---ARMRDSARALVKEVQSRLGVTLLVVSHDPAD-------IFAIADRVGVLVK 216 (353)
T ss_dssp --------TTCCSE-EEEESTTTTSC---GGGHHHHHHHHHHHHHHHCCEEEEEESCHHH-------HHHHCSEEEEEET
T ss_pred --------HCCCCE-EEECCCCCCCC---HHHHHHHHHHHHHHHHHHCCEEEEECCCHHH-------HHHHCCEEEEEEC
T ss_conf --------038978-99858754269---9999999999999999629999999889999-------9986999999989
Q ss_pred CC
Q ss_conf 86
Q gi|254780799|r 658 SK 659 (806)
Q Consensus 658 s~ 659 (806)
-+
T Consensus 217 G~ 218 (353)
T 1oxx_K 217 GK 218 (353)
T ss_dssp TE
T ss_pred CE
T ss_conf 99
No 389
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=51.41 E-value=8.5 Score=16.47 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=18.5
Q ss_pred CCCE--EEEEECCCCHHHHHHHHHHH
Q ss_conf 0202--35530477406799999999
Q gi|254780799|r 453 RMPH--LLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 453 kMPH--LLIAGtTGSGKSV~iN~iI~ 476 (806)
+|++ ++|-|..|+|||-.+|.++.
T Consensus 13 ~~~~~Ki~vvG~~~vGKSsLi~~~~~ 38 (211)
T 3bbp_A 13 PLRKFKLVFLGEQSVGKTSLITRFMY 38 (211)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 87617999999599799999999971
No 390
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=51.34 E-value=9.2 Score=16.22 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=17.5
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 23553047740679999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI 475 (806)
.+++-|..|+|||.-+|.++
T Consensus 18 kI~liG~~~~GKTsli~~l~ 37 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999988799999997
No 391
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=51.25 E-value=8.3 Score=16.58 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=17.6
Q ss_pred EEEEEECCCCHHHHHHHHHHH
Q ss_conf 235530477406799999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~ 476 (806)
-++|.|..|+|||--+|.++.
T Consensus 24 kI~ivG~~~~GKTsLi~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999998999999973
No 392
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=51.16 E-value=3.8 Score=19.11 Aligned_cols=111 Identities=15% Similarity=0.232 Sum_probs=59.6
Q ss_pred CCCCCCEEEEEHHHHHHHHHHCCCHHH----HHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHH------------CC
Q ss_conf 234698687763446888873210058----89999998664142379999657775355435541------------10
Q gi|254780799|r 585 DFQHMPYIVVVIDEMADLMMVARKDIE----SAVQRLAQMARASGIHVIMATQRPSVDVITGTIKA------------NF 648 (806)
Q Consensus 585 ~~~~lp~ivviiDElaDlmm~~~~~ve----~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ika------------n~ 648 (806)
+-+.+|++.-+=+|.-.+.-..+-++- .+=.+=|++|-++||++++|-=+-. ++|.-+++- ..
T Consensus 184 ~a~~i~~v~~~~~~~~~~~~~~~s~~GtGGM~tKl~AA~~a~~~Gi~~iIa~G~~~-~~l~~i~~g~~~GT~F~p~~~~~ 262 (367)
T 2j5v_A 184 QAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKP-GVIGDVMEGISVGTLFHAQATPL 262 (367)
T ss_dssp ------------------------------CHHHHHHHHHHHHTTCEEEEEETTST-THHHHHHHTCCCSEEECCCSSCC
T ss_pred CCCCEEEEECCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC-CCHHHHHCCCCCCCEECCCCCCH
T ss_conf 66533687337567887716888888868517799999999878982999218997-50689866997442467777843
Q ss_pred CCEEEEEECCCCCCHHHCCCCCHHHHCCCCCEEEECCCCCEEEEEECCCCH
Q ss_conf 251587645866421233886457865887547736898325888334898
Q gi|254780799|r 649 PTRISFQVSSKIDSRTILGEQGAEQLLGQGDMLYMTGGGRVQRIHGPFVSD 699 (806)
Q Consensus 649 p~riaf~v~s~~dSrtild~~gae~Llg~gdml~~~~~~~~~r~~g~~v~~ 699 (806)
.+|--.--+++.--..++|..+|+.|+-+|--|. | ...++|+|-|-..
T Consensus 263 ~~Rk~Wi~~~~~~G~i~vd~gA~~al~~~g~SLL-p--~GI~~V~G~F~~G 310 (367)
T 2j5v_A 263 ENRKRWIFGAPPAGEITVDEGATAAILERGSSLL-P--KGIKSVTGNFSRG 310 (367)
T ss_dssp CGGGGGGGTCCCSCEEEECHHHHHHHHHHCCCBC-G--GGEEEEESCCCTT
T ss_pred HHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCCC-C--CCCEEEECEECCC
T ss_conf 3689998513688738987489999874388616-3--3628997866699
No 393
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=50.81 E-value=7.9 Score=16.73 Aligned_cols=19 Identities=5% Similarity=0.114 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHHHCCC
Q ss_conf 4898899999999971289
Q gi|254780799|r 696 FVSDIEVEKVVSHLKTQGE 714 (806)
Q Consensus 696 ~v~~~ev~~v~~~~~~q~~ 714 (806)
-.||+||..||+|+.+|.+
T Consensus 69 ~LSd~ei~~vv~Yil~~sk 87 (87)
T 2zon_G 69 AADEATLRAAVAYMMDAAR 87 (87)
T ss_dssp CCCHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHCC
T ss_conf 9999999999999998539
No 394
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=50.65 E-value=10 Score=15.92 Aligned_cols=12 Identities=8% Similarity=0.044 Sum_probs=4.4
Q ss_pred CHHHHHHHHHHH
Q ss_conf 256654578999
Q gi|254780799|r 328 SPKVMQNNACTL 339 (806)
Q Consensus 328 s~eeL~~nA~lL 339 (806)
+++|+++-.+.|
T Consensus 122 s~eE~~~l~~~L 133 (138)
T 1jgs_A 122 TADEVATLEYLL 133 (138)
T ss_dssp TTTCHHHHHHHH
T ss_pred CHHHHHHHHHHH
T ss_conf 999999999999
No 395
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=50.57 E-value=5 Score=18.22 Aligned_cols=53 Identities=21% Similarity=0.199 Sum_probs=28.0
Q ss_pred HHHCCCCCHHHHCCCCCEEEECCCCCEEEEEECCC--CHHHHHHHHHHHHHCCC-CCCCCCCC
Q ss_conf 12338864578658875477368983258883348--98899999999971289-74211001
Q gi|254780799|r 663 RTILGEQGAEQLLGQGDMLYMTGGGRVQRIHGPFV--SDIEVEKVVSHLKTQGE-AKYIDIKD 722 (806)
Q Consensus 663 rtild~~gae~Llg~gdml~~~~~~~~~r~~g~~v--~~~ev~~v~~~~~~q~~-~~y~~~~~ 722 (806)
=++.|-.|.|.+--. +........++++ |=.-..+|+..+++... .-|.+...
T Consensus 237 l~~VDLaGsEr~~~~-------~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~VPyR~SkL 292 (350)
T 2vvg_A 237 LNLVDLAGSERQSKT-------GATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKL 292 (350)
T ss_dssp EEEEECCCCCC----------------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHH
T ss_pred EEEECCCCCCCCCCC-------CCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 985305675434446-------77521202121131087789999999755898578737889
No 396
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=50.51 E-value=5.8 Score=17.72 Aligned_cols=20 Identities=40% Similarity=0.607 Sum_probs=16.9
Q ss_pred CCCCCEEEEEECCCCHHHHH
Q ss_conf 10020235530477406799
Q gi|254780799|r 451 LARMPHLLIAGTTGSGKSVA 470 (806)
Q Consensus 451 LakMPHLLIAGtTGSGKSV~ 470 (806)
-+||=+++|-|..|||||-=
T Consensus 4 ~~~~m~Iil~GpPGSGK~T~ 23 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp ---CCEEEEEECTTSSHHHH
T ss_pred CCCCCEEEEECCCCCCHHHH
T ss_conf 62324499989999987999
No 397
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase, magnesium, transferase, structural genomi structural genomics consortium; HET: CIT; 2.64A {Cryptosporidium parvum}
Probab=50.49 E-value=10 Score=15.90 Aligned_cols=49 Identities=39% Similarity=0.452 Sum_probs=34.2
Q ss_pred HHHHHHHCCCH---------HHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEE
Q ss_conf 68888732100---------5889999998664142379999657775355435541102515
Q gi|254780799|r 599 MADLMMVARKD---------IESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRI 652 (806)
Q Consensus 599 laDlmm~~~~~---------ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~ri 652 (806)
-+|=.|+|..| |=..--++-.++|.+|.-.|+||| +.--+++...|||-
T Consensus 294 ~sDgimVaRGDLg~ei~~e~vp~~Qk~ii~~c~~~gkPvivATq-----mLeSM~~~p~PTRA 351 (534)
T 3ma8_A 294 ESDGIMVARGDLGMEIPPEKIFVAQKCMISKCNVAGKPVVTATQ-----MLESMIKSNRPTRA 351 (534)
T ss_dssp HSSEEEEEHHHHHHHSCHHHHHHHHHHHHHHHHHHTCCEEEESS-----SSGGGGTSSSCCHH
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECC-----HHHHHHHCCCCCCH
T ss_conf 58689997676324389889889999999999974992999880-----16778748998607
No 398
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A
Probab=50.47 E-value=10 Score=15.90 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHC--CEEEEEEECCCC
Q ss_conf 8999999866414--237999965777
Q gi|254780799|r 612 SAVQRLAQMARAS--GIHVIMATQRPS 636 (806)
Q Consensus 612 ~~i~rlaq~ara~--GiHli~aTqrPs 636 (806)
.+|....+.||+. ||+.-++=|-||
T Consensus 809 ~lI~~~i~~~~~~~~g~~v~iCGe~~s 835 (873)
T 1kbl_A 809 QLVEMAVKKGRQTRPGLKCGICGEHGG 835 (873)
T ss_dssp HHHHHHHHHHHHHCTTCEEEECSGGGG
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 999999999875079998997288666
No 399
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} PDB: 2i54_A* 2i55_A*
Probab=50.46 E-value=9.3 Score=16.19 Aligned_cols=29 Identities=17% Similarity=0.075 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 00588999999866414237999965777
Q gi|254780799|r 608 KDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 608 ~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
+++-....+.-+.+|+.|+|.++||=||-
T Consensus 20 ~~i~~~~~~ai~~l~~~g~~v~~~TGR~~ 48 (246)
T 3f9r_A 20 LCQTDEMRALIKRARGAGFCVGTVGGSDF 48 (246)
T ss_dssp SCCCHHHHHHHHHHHHTTCEEEEECSSCH
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCH
T ss_conf 98899999999999968999999889998
No 400
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=50.43 E-value=5.6 Score=17.84 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=17.0
Q ss_pred EEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 55304774067999999999998
Q gi|254780799|r 458 LIAGTTGSGKSVAINTMILSLLY 480 (806)
Q Consensus 458 LIAGtTGSGKSV~iN~iI~SlLy 480 (806)
=|-|..|||||-.+|.|+ .+|.
T Consensus 6 ~ivG~nGsGKTTLl~~l~-g~l~ 27 (171)
T 2f1r_A 6 SIVGTSDSGKTTLITRMM-PILR 27 (171)
T ss_dssp EEEESCHHHHHHHHHHHH-HHHH
T ss_pred EEECCCCCCHHHHHHHHH-HHHC
T ss_conf 998599988999999997-1027
No 401
>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=50.42 E-value=10 Score=15.90 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCE-EEEE---EEECCEEEE-EEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 5665457899999974248632-8998---410442444-4432147863999997889999886
Q gi|254780799|r 329 PKVMQNNACTLKSVLSDFGIQG-EIVN---VRPGPVITL-YELEPAPGIKSSRIIGLSDDIARSM 388 (806)
Q Consensus 329 ~eeL~~nA~lLE~tL~dFGVe~-~Vv~---v~pGPVVTr-YEi~PApGVKvSKI~nLadDIA~aL 388 (806)
++.++...+.+++.+++.+++. ++.. ..|||+-.. --+..+|-.+. +=.+|.+.|...+
T Consensus 145 ~~~~~~i~~~i~~~l~~~~~~~~~i~gIgi~~pG~vd~~~g~~~~~~~~~~-~~~~l~~~l~~~~ 208 (429)
T 1z05_A 145 DDVLARLLFEIEEFFQTYAAQLDRVTSIAITLPGLVNSEQGIVLQMPHYNV-KNLALGPEIYKAT 208 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCEEEEEEEEESSEEETTTTEEEECSSSBC-SSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCEEECCCCCCC-CCCCHHHHHHHHH
T ss_conf 899999999999999975766146579999627861688874624898885-8984589999997
No 402
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=50.24 E-value=9.2 Score=16.23 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCC
Q ss_conf 348988999999999712897
Q gi|254780799|r 695 PFVSDIEVEKVVSHLKTQGEA 715 (806)
Q Consensus 695 ~~v~~~ev~~v~~~~~~q~~~ 715 (806)
.-+||+|+..|+.|+++|...
T Consensus 65 ~~Lsd~ei~~iaaYi~slp~~ 85 (87)
T 1cno_A 65 TALSDADIANLAAYYASNPAA 85 (87)
T ss_dssp TTCCHHHHHHHHHHHHHSCTT
T ss_pred HCCCHHHHHHHHHHHHHCCCC
T ss_conf 179999999999999987798
No 403
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=50.04 E-value=8 Score=16.67 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHHC
Q ss_conf 8988999999999712
Q gi|254780799|r 697 VSDIEVEKVVSHLKTQ 712 (806)
Q Consensus 697 v~~~ev~~v~~~~~~q 712 (806)
+||+|+..|++|++++
T Consensus 66 lsd~ei~~la~Yl~sl 81 (82)
T 2exv_A 66 VSDDEAQTLAKWVLSQ 81 (82)
T ss_dssp CCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHC
T ss_conf 6999999999999975
No 404
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural protein; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=49.96 E-value=5.4 Score=17.96 Aligned_cols=17 Identities=35% Similarity=0.548 Sum_probs=13.0
Q ss_pred EEEEEECCCCHHHHHHH
Q ss_conf 23553047740679999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAIN 472 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN 472 (806)
-++.-|.|||||+=-+-
T Consensus 157 tifaYGqTGSGKTyTm~ 173 (410)
T 1v8k_A 157 TCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCCCEEEC
T ss_conf 69986888899853512
No 405
>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural genomics, PSI-2; HET: BGC; 1.90A {Streptococcus pneumoniae TIGR4}
Probab=49.94 E-value=10 Score=15.85 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 665457899999974248632899841
Q gi|254780799|r 330 KVMQNNACTLKSVLSDFGIQGEIVNVR 356 (806)
Q Consensus 330 eeL~~nA~lLE~tL~dFGVe~~Vv~v~ 356 (806)
..+++.++.|.+.|++.|+++++.+..
T Consensus 64 ~g~~~~a~~l~~~l~~~G~~v~~~e~~ 90 (481)
T 2pok_A 64 VGLKEVANYLGEIFKRVGAEVEIDESY 90 (481)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 169999999999999779979999669
No 406
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=49.83 E-value=5.9 Score=17.66 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=17.7
Q ss_pred CCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 00202355304774067999999
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~i 474 (806)
...|=++|-|..|||||--..-+
T Consensus 13 ~~~~iI~i~G~pGSGKsT~ak~L 35 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKL 35 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
T ss_conf 99838999899999879999999
No 407
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, ABC ATPase, dimer, kleisin, mitosis, cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=49.81 E-value=7.7 Score=16.81 Aligned_cols=44 Identities=14% Similarity=0.329 Sum_probs=24.1
Q ss_pred CCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 6986877634468888732100588999999866414237999965777
Q gi|254780799|r 588 HMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 588 ~lp~ivviiDElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
+.| ++++||.--=| -+.-.+..+.-|.++ ...+.++|+.|.+|.
T Consensus 355 ~~p--ililDE~~~~L--d~~~~~~~~~~L~~~-~~~~~Q~I~tTH~~~ 398 (430)
T 1w1w_A 355 PSP--FFVLDEVDAAL--DITNVQRIAAYIRRH-RNPDLQFIVISLKNT 398 (430)
T ss_dssp CCS--EEEESSTTTTC--CHHHHHHHHHHHHHH-CBTTBEEEEECSCHH
T ss_pred CCC--EEEEECCCCCC--CHHHHHHHHHHHHHH-HCCCCEEEEEECCHH
T ss_conf 998--79997887668--999999999999986-278987999958789
No 408
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A*
Probab=49.72 E-value=9 Score=16.29 Aligned_cols=47 Identities=23% Similarity=0.435 Sum_probs=29.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHH---HHCCHH-H--EEEEEECCCHHHHHHCC
Q ss_conf 35530477406799999999999---829957-8--47888523100111027
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLL---YRMTPA-Q--CRLIMIDPKMLELSVYD 503 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlL---yk~~P~-e--vkliliDPK~vEls~Y~ 503 (806)
++|.|..|+|||-.||.++..=. |..+.. + .+...+|.+.+.+.+++
T Consensus 18 I~vvG~~~vGKTSli~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~~l~i~d 70 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 70 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEECCEEEEEEEEE
T ss_conf 99999999189999999971999887787035556788999899999999984
No 409
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=49.70 E-value=10 Score=15.82 Aligned_cols=53 Identities=6% Similarity=0.130 Sum_probs=42.4
Q ss_pred HHHHHHHHHCCCEEEEHHHHHHC----CCHHHHHHHHHHHHHCCCCCHHHCCCCCEE
Q ss_conf 99999999659850001422200----117789999999997798680227887267
Q gi|254780799|r 744 KQAVDIVLRDNKASISYIQRRLG----IGYNRAASIIENMEEKGVIGPASSTGKREI 796 (806)
Q Consensus 744 ~~a~~~v~~~~~~s~s~lqr~~~----igy~raar~~~~~e~~giv~~~~g~~~r~v 796 (806)
.+..+++.+.+.+++.-++-.|. ..|+--..++..|+++|+|.-....+++-.
T Consensus 12 ~~VM~~lW~~~~~t~~ei~~~l~~~~~~~~sTv~T~L~RL~~Kg~l~~~~~gr~~~Y 68 (82)
T 1p6r_A 12 LEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGRVFVY 68 (82)
T ss_dssp HHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCEEEE
T ss_conf 999999981799789999998602369728579999999998898688725983899
No 410
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=49.59 E-value=10 Score=15.81 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=26.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCC
Q ss_conf 235530477406799999999999829957847888523100111027
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYD 503 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~ 503 (806)
|.||.|..|-|=.++-|-+.+.+ =++.++|+..||.+-.+
T Consensus 38 ~VliiG~gglG~ei~knL~l~Gv--------~~i~i~D~d~v~~~nl~ 77 (346)
T 1y8q_A 38 RVLLVGLKGLGAEIAKNLILAGV--------KGLTMLDHEQVTPEDPG 77 (346)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTC--------SEEEEECCCBCCSSCGG
T ss_pred CEEEECCCHHHHHHHHHHHHHCC--------CEEEEEECCCCCHHHHC
T ss_conf 79998768899999999999579--------78999939992585746
No 411
>1n6m_A Claret segregational protein; NCD, microtubule, motor, kinesin, cell cycle; HET: ADP; 2.50A {Drosophila melanogaster} SCOP: c.37.1.9 PDB: 2ncd_A* 1cz7_A*
Probab=49.51 E-value=5.4 Score=17.93 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=12.9
Q ss_pred EEEEEECCCCHHHHHH
Q ss_conf 2355304774067999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAI 471 (806)
Q Consensus 456 HLLIAGtTGSGKSV~i 471 (806)
-++.-|.|||||+--+
T Consensus 138 ~ifaYGqTGSGKTyTm 153 (409)
T 1n6m_A 138 CIFAYGQTGSGKTYTM 153 (409)
T ss_dssp EEEEEBSTTSSHHHHH
T ss_pred EEECCCCCCCCCCEEC
T ss_conf 5866765777786513
No 412
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=49.35 E-value=8.5 Score=16.48 Aligned_cols=44 Identities=27% Similarity=0.409 Sum_probs=26.9
Q ss_pred EEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 7854100202355304774067999999999998299578478885231
Q gi|254780799|r 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 447 vv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
|-.++.+==.+-+.|.-|||||-.+|+|-- + .+|+.=+. .+|-|
T Consensus 26 Vs~~v~~Gei~gliGpnGaGKSTL~~~i~G-~---~~p~sG~I-~~~G~ 69 (257)
T 1g6h_A 26 VSISVNKGDVTLIIGPNGSGKSTLINVITG-F---LKADEGRV-YFENK 69 (257)
T ss_dssp ECCEEETTCEEEEECSTTSSHHHHHHHHTT-S---SCCSEEEE-EETTE
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHC-C---CCCCCEEE-EECCE
T ss_conf 179988997999999999869999999978-9---77886089-99999
No 413
>2awn_A Maltose/maltodextrin import ATP-binding protein MALK; ATP-binding cassette, transport protein; HET: ADP; 2.30A {Escherichia coli K12} SCOP: b.40.6.3 c.37.1.12 PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 2r6g_A* 1q1b_A
Probab=49.18 E-value=7.3 Score=16.98 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=25.4
Q ss_pred EECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 54100202355304774067999999999998299578478885231
Q gi|254780799|r 449 ADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 449 ~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
.++.+==-+-+-|-.|||||..++.|-- | -+|++=+ |.+|=|
T Consensus 24 l~i~~Ge~~~llGpsG~GKSTllr~iaG-l---~~p~~G~-I~~~g~ 65 (381)
T 2awn_A 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAG-L---ETITSGD-LFIGEK 65 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHT-S---SCCSEEE-EEESSS
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHC-C---CCCCCEE-EEECCE
T ss_conf 7988998999999999829999999975-9---9988439-999999
No 414
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=49.05 E-value=5.5 Score=17.93 Aligned_cols=15 Identities=40% Similarity=0.638 Sum_probs=11.6
Q ss_pred EEEEECCCCHHHHHH
Q ss_conf 355304774067999
Q gi|254780799|r 457 LLIAGTTGSGKSVAI 471 (806)
Q Consensus 457 LLIAGtTGSGKSV~i 471 (806)
++.-|.|||||+-.+
T Consensus 88 i~aYGqtgSGKTyTm 102 (360)
T 1ry6_A 88 CFAYGQTGSGKTYTM 102 (360)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEECCCCCCCCCEEE
T ss_conf 996157778787697
No 415
>2rhm_A Putative kinase; ZP_00765535.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Chloroflexus aurantiacus j-10-fl}
Probab=48.83 E-value=10 Score=15.81 Aligned_cols=20 Identities=15% Similarity=0.476 Sum_probs=15.4
Q ss_pred CEEEEEECCCCHHHHHHHHH
Q ss_conf 02355304774067999999
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~i 474 (806)
+=.+|.|..|||||--.+.+
T Consensus 6 ~~I~i~G~~GsGKTTla~~L 25 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
T ss_conf 89999868999979999999
No 416
>1sgw_A Putative ABC transporter; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Pyrococcus furiosus dsm 3638} SCOP: c.37.1.12
Probab=48.83 E-value=8.8 Score=16.37 Aligned_cols=46 Identities=22% Similarity=0.438 Sum_probs=28.2
Q ss_pred CEEEEECC----CCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
Q ss_conf 66785410----0202355304774067999999999998299578478885231
Q gi|254780799|r 445 KPIIADLA----RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 (806)
Q Consensus 445 ~pvv~DLa----kMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK 495 (806)
+|++-|+. +==-..+.|.-|||||..+|.| +.++ +|++=. |++|=+
T Consensus 22 ~~vl~~is~~i~~Gei~~liG~NGsGKSTLl~~l-~g~~---~p~~G~-I~~~g~ 71 (214)
T 1sgw_A 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTI-STYL---KPLKGE-IIYNGV 71 (214)
T ss_dssp SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHH-TTSS---CCSEEE-EEETTE
T ss_pred CEEECCEEEEECCCCEEEEECCCCCCHHHHHHHH-HCCC---CCCCCE-EEECCE
T ss_conf 9697131789859979999999998399999999-6666---788777-999999
No 417
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, cell cycle, cell division, coiled coil, endosome; HET: ADP; 2.60A {Homo sapiens}
Probab=48.82 E-value=5.5 Score=17.89 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=28.7
Q ss_pred HHCCCCCHHHHCCCCCEEEECCCCCEEEE-EECCC--CHHHHHHHHHHHHHCC-CCCCCCCCC
Q ss_conf 23388645786588754773689832588-83348--9889999999997128-974211001
Q gi|254780799|r 664 TILGEQGAEQLLGQGDMLYMTGGGRVQRI-HGPFV--SDIEVEKVVSHLKTQG-EAKYIDIKD 722 (806)
Q Consensus 664 tild~~gae~Llg~gdml~~~~~~~~~r~-~g~~v--~~~ev~~v~~~~~~q~-~~~y~~~~~ 722 (806)
++.|-.|.|++--.+.. +.+...|+ .+.+| |=.-..+|+.-+.... ...|.+...
T Consensus 275 ~~VDLAGsEr~~~~~~~----~~~~~~~~~e~~~IN~SL~~L~~vi~aL~~~~~~VPyR~SkL 333 (376)
T 2rep_A 275 SLVDLAGSERLDPGLAL----GPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRNSKL 333 (376)
T ss_dssp EEEECCCCC----------------------------CHHHHHHHHHHHHTTCSCCCGGGSHH
T ss_pred EEEECCCCCCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 44404354320004676----764067899998873779999999999846999778857888
No 418
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=48.75 E-value=7.7 Score=16.81 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=17.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 235530477406799999999999829
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRM 482 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~ 482 (806)
++++..-|||||+.|. ++.+|.+.
T Consensus 42 dvi~~a~tGsGKTlay---llp~l~~~ 65 (206)
T 1vec_A 42 DILARAKNGTGKSGAY---LIPLLERL 65 (206)
T ss_dssp CEEEECCSSSTTHHHH---HHHHHHHC
T ss_pred CEEEEECCCCCCEEEE---ECCHHHHC
T ss_conf 8899930799840156---43424301
No 419
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=48.63 E-value=8.6 Score=16.43 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=27.0
Q ss_pred CCCCC-EEEEEECCCCHHHHHHHHHHHHHHHHCCH-HHEEEEEECCC
Q ss_conf 10020-23553047740679999999999982995-78478885231
Q gi|254780799|r 451 LARMP-HLLIAGTTGSGKSVAINTMILSLLYRMTP-AQCRLIMIDPK 495 (806)
Q Consensus 451 LakMP-HLLIAGtTGSGKSV~iN~iI~SlLyk~~P-~evkliliDPK 495 (806)
+|+.+ |+||-|-+||||+.+-.. +...++ .+-.||.||..
T Consensus 21 ~a~~~~pvlI~Ge~GtGK~~~Ar~-----iH~~s~~~~~~fv~i~~~ 62 (304)
T 1ojl_A 21 VAPSDATVLIHGDSGTGKELVARA-----LHACSARSDRPLVTLNCA 62 (304)
T ss_dssp HCSTTSCEEEESCTTSCHHHHHHH-----HHHHSSCSSSCCCEEECS
T ss_pred HHCCCCCEEEECCCCCCHHHHHHH-----HHHHCCCCCCCEEEEECC
T ss_conf 968999689889899779999999-----998187679985897433
No 420
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=48.61 E-value=9.4 Score=16.16 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=16.7
Q ss_pred ECCCCHHHHHHHHHHHHHCC
Q ss_conf 33489889999999997128
Q gi|254780799|r 694 GPFVSDIEVEKVVSHLKTQG 713 (806)
Q Consensus 694 g~~v~~~ev~~v~~~~~~q~ 713 (806)
+...||+|+..|++|+|++.
T Consensus 80 ~~~Lsd~di~~l~aYl~slk 99 (99)
T 1w2l_A 80 YASLSEREVAALIEFIKQQQ 99 (99)
T ss_dssp GGGCCHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHCC
T ss_conf 78899999999999999758
No 421
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=48.10 E-value=7.7 Score=16.81 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=18.1
Q ss_pred EEEEEECCCCHHHHHHHHHHH
Q ss_conf 235530477406799999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~ 476 (806)
+++|-|..|+|||--||.++.
T Consensus 24 ki~ivG~~~vGKTsLi~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999888999999963
No 422
>3hdt_A Putative kinase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=47.86 E-value=5.1 Score=18.14 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=10.6
Q ss_pred EEEEECCCCHHHHH
Q ss_conf 35530477406799
Q gi|254780799|r 457 LLIAGTTGSGKSVA 470 (806)
Q Consensus 457 LLIAGtTGSGKSV~ 470 (806)
.-|+|..|||||--
T Consensus 17 ItI~g~~GsGKsTi 30 (223)
T 3hdt_A 17 ITIEREYGSGGRIV 30 (223)
T ss_dssp EEEEECTTSCHHHH
T ss_pred EEECCCCCCCHHHH
T ss_conf 98579998997999
No 423
>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}
Probab=47.78 E-value=6.1 Score=17.54 Aligned_cols=13 Identities=8% Similarity=0.036 Sum_probs=5.1
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 8999999996598
Q gi|254780799|r 743 YKQAVDIVLRDNK 755 (806)
Q Consensus 743 ~~~a~~~v~~~~~ 755 (806)
+..|++.+.....
T Consensus 400 ~~~~l~~L~~~~~ 412 (442)
T 2xdv_A 400 HLDALKQIWNSPA 412 (442)
T ss_dssp GHHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999857995
No 424
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=47.70 E-value=10 Score=15.94 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=17.4
Q ss_pred EEEEECCCCHHHHHHHHHHH
Q ss_conf 35530477406799999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~ 476 (806)
++|-|..|+|||-.||.++.
T Consensus 15 i~vvG~~~vGKTsLi~~~~~ 34 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899689999999985
No 425
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=47.69 E-value=9.7 Score=16.07 Aligned_cols=63 Identities=16% Similarity=0.087 Sum_probs=34.3
Q ss_pred HHHHHHHHCCCCEEEEEEEECCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC-CCCCC
Q ss_conf 9999974248632899841044244444321478639999978899998863001210-00388
Q gi|254780799|r 338 TLKSVLSDFGIQGEIVNVRPGPVITLYELEPAPGIKSSRIIGLSDDIARSMSAISARV-AVIPR 400 (806)
Q Consensus 338 lLE~tL~dFGVe~~Vv~v~pGPVVTrYEi~PApGVKvSKI~nLadDIA~aLsa~svRI-apIPG 400 (806)
.....+..-+-.+.|+++.-.-...-+.-.++=+.==.=+.+|.+-+|+-++-..||| +.-||
T Consensus 142 ~~~p~m~~~~~gg~IvnisS~~~~~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG 205 (266)
T 3o38_A 142 AALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPS 205 (266)
T ss_dssp HHHHHHHTSSCCEEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred HHHHHHHHCCCCCEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECC
T ss_conf 9999998547897499983420167899976899999999999999999860419389999787
No 426
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=47.48 E-value=10 Score=15.83 Aligned_cols=31 Identities=39% Similarity=0.458 Sum_probs=21.1
Q ss_pred ECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHC
Q ss_conf 410020235530477406799999999999829
Q gi|254780799|r 450 DLARMPHLLIAGTTGSGKSVAINTMILSLLYRM 482 (806)
Q Consensus 450 DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~ 482 (806)
|..|.=-||+=|+.+||||-.+.-| -++|..
T Consensus 3 ~~k~~iklLLLG~geSGKSTi~KQ~--kii~~~ 33 (327)
T 3ohm_A 3 DARRELKLLLLGTGESGKSTFIKQM--RIIHGS 33 (327)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHH--HHHHSC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHH--HHHCCC
T ss_conf 5335785998779987699999999--997289
No 427
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=47.42 E-value=11 Score=15.57 Aligned_cols=34 Identities=9% Similarity=0.179 Sum_probs=17.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 4468888732100588999999866414237999
Q gi|254780799|r 597 DEMADLMMVARKDIESAVQRLAQMARASGIHVIM 630 (806)
Q Consensus 597 DElaDlmm~~~~~ve~~i~rlaq~ara~GiHli~ 630 (806)
.|+|...=++...|-.-|.||-+..==.|.|.++
T Consensus 23 ~eiA~~~g~s~~tv~~Ri~rL~~~GiI~~~~~~i 56 (144)
T 2cfx_A 23 RELGRKIKLSPPSVTERVRQLESFGIIKQYTLEV 56 (144)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 9999998929899999999998589846789991
No 428
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=47.41 E-value=10 Score=15.85 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=18.0
Q ss_pred EEEEEECCCCHHHHHHHHHHH
Q ss_conf 235530477406799999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~ 476 (806)
.++|-|..|+|||-.||.++-
T Consensus 9 KI~v~G~~~vGKTsli~~~~~ 29 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899899999999983
No 429
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*
Probab=47.33 E-value=6.3 Score=17.46 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=29.1
Q ss_pred CHHHHCCCCCEEEECCCC-C-------EEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 457865887547736898-3-------25888334898899999999971
Q gi|254780799|r 670 GAEQLLGQGDMLYMTGGG-R-------VQRIHGPFVSDIEVEKVVSHLKT 711 (806)
Q Consensus 670 gae~Llg~gdml~~~~~~-~-------~~r~~g~~v~~~ev~~v~~~~~~ 711 (806)
+-|-.|+-||+||+|+|- . -+=|-+-|++..-+..+....++
T Consensus 255 ~~e~~l~pGD~LfIP~gWwH~V~nl~~sisvt~Nf~~~~nl~~~~~~~~~ 304 (336)
T 3k2o_A 255 PLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVR 304 (336)
T ss_dssp CEEEEECTTCEEEECTTCEEEEEESSCEEEEEEEECCTTTHHHHHHHHHH
T ss_pred EEEEEECCCCEEEECCCCEEEEECCCCEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 59999899998996899708987389869998243784448999999985
No 430
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=47.28 E-value=5.4 Score=17.99 Aligned_cols=47 Identities=17% Similarity=0.281 Sum_probs=31.8
Q ss_pred EEEEECCCCHHHHHHHHHHHHH---HHHCCHH---HEEEEEECCCHHHHHHCC
Q ss_conf 3553047740679999999999---9829957---847888523100111027
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSL---LYRMTPA---QCRLIMIDPKMLELSVYD 503 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~Sl---Lyk~~P~---evkliliDPK~vEls~Y~ 503 (806)
++|-|.-|+|||-.||.++..= -|..++. ..+.+..+.+.+.+.+++
T Consensus 6 v~ilG~~~vGKSsLi~~l~~~~~~~~~~pt~~~~~~~~~~~~~~~~~~~~i~d 58 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWD 58 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEE
T ss_conf 99999999098999999962999988499423120057999732578778862
No 431
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 1x1r_A* 1x1s_A*
Probab=47.25 E-value=11 Score=15.55 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=29.5
Q ss_pred CCCE--EEEEECCCCHHHHHHHHHHHHHHHHCCHH---------HEEEEEECCCHHHHHHCC
Q ss_conf 0202--35530477406799999999999829957---------847888523100111027
Q gi|254780799|r 453 RMPH--LLIAGTTGSGKSVAINTMILSLLYRMTPA---------QCRLIMIDPKMLELSVYD 503 (806)
Q Consensus 453 kMPH--LLIAGtTGSGKSV~iN~iI~SlLyk~~P~---------evkliliDPK~vEls~Y~ 503 (806)
.+|+ +++-|..|+|||-.+|.++- ..-++ ..+.+.+|.+.+.+.+++
T Consensus 15 ~~p~~Ki~lvG~~~vGKTsli~r~~~----~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d 72 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQ----KIFVDDYDPTIEDSYLKHTEIDNQWAILDVLD 72 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHH----SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHC----CCCCCCCCCCCCEEEEEEEECCCEEEEEEEEE
T ss_conf 99807999999899688999999964----99888759965358888660399089999986
No 432
>2dpx_A GTP-binding protein RAD; GTPase, small-G, RGK, signal transduction, diabetes, signaling protein; HET: GDP; 1.80A {Homo sapiens} PDB: 2gjs_A*
Probab=47.22 E-value=10 Score=15.82 Aligned_cols=46 Identities=28% Similarity=0.309 Sum_probs=26.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCH---H--HEEEEEECCCHHHHHHCC
Q ss_conf 3553047740679999999999982995---7--847888523100111027
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTP---A--QCRLIMIDPKMLELSVYD 503 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P---~--evkliliDPK~vEls~Y~ 503 (806)
+++-|..|+|||--||.+.- --+...+ . -.+-+.+|=+.+.|.+++
T Consensus 10 i~lvG~~~vGKSsli~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d 60 (174)
T 2dpx_A 10 VLLLGAPGVGKSALARIFGG-VEDGPEAEAAGHTYDRSIVVDGEEASLMVYD 60 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHT-CC---------CEEEEEEEETTEEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHC-CCCCCCCCEEEEEEEEEEEECCEEEEEEEEE
T ss_conf 99999999589999999948-8457754403689999999999889999998
No 433
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=47.14 E-value=8.2 Score=16.60 Aligned_cols=85 Identities=16% Similarity=0.340 Sum_probs=44.7
Q ss_pred CEEEEEHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCC----CCHH
Q ss_conf 868776344-68888732100588999999866414237999965777535543554110251587645866----4212
Q gi|254780799|r 590 PYIVVVIDE-MADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKI----DSRT 664 (806)
Q Consensus 590 p~ivviiDE-laDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~----dSrt 664 (806)
|-++ +-|| ++.|=-...+++... |-+.-|.-|+-.|+.|.-+.. =..+-.||+.----++ .-.-
T Consensus 158 P~ll-llDEP~s~LD~~~~~~i~~~---l~~~~~~~~~t~i~vTHd~~e-------a~~~adri~vm~~G~i~q~g~~~e 226 (372)
T 1g29_1 158 PQVF-LMDEPLSNLDAKLRVRMRAE---LKKLQRQLGVTTIYVTHDQVE-------AMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp CSEE-EEECTTTTSCHHHHHHHHHH---HHHHHHHHTCEEEEEESCHHH-------HHHHCSEEEEEETTEEEEEECHHH
T ss_pred CCEE-EECCCCCCCCHHHHHHHHHH---HHHHHHHHCCEEEEECCCHHH-------HHHHCCEEEEEECCEEEEECCHHH
T ss_conf 9999-96797654599999999999---999998529989999799999-------998699999998999999869999
Q ss_pred HCCCCC---HHHHCCCCCEEEECC
Q ss_conf 338864---578658875477368
Q gi|254780799|r 665 ILGEQG---AEQLLGQGDMLYMTG 685 (806)
Q Consensus 665 ild~~g---ae~Llg~gdml~~~~ 685 (806)
|++.+. .-+++|...|-++++
T Consensus 227 l~~~P~~~~va~~~g~~~~Nll~~ 250 (372)
T 1g29_1 227 VYDKPANTFVAGFIGSPPMNFLDA 250 (372)
T ss_dssp HHHSCSBHHHHHHSSSSCCEEEEE
T ss_pred HHHCCCCHHHHHHHCCCCCCEEEE
T ss_conf 986899989999728996105899
No 434
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophilin-4, GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=47.07 E-value=11 Score=15.80 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=17.9
Q ss_pred EEEEECCCCHHHHHHHHHHH
Q ss_conf 35530477406799999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~ 476 (806)
++|-|..|+|||--||.++.
T Consensus 14 ivvvG~~~vGKTsLi~~~~~ 33 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999788999999973
No 435
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=47.06 E-value=8.8 Score=16.39 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHHCCC
Q ss_conf 898899999999971289
Q gi|254780799|r 697 VSDIEVEKVVSHLKTQGE 714 (806)
Q Consensus 697 v~~~ev~~v~~~~~~q~~ 714 (806)
+||+||..|+.|+++|.+
T Consensus 69 Lsd~ei~~v~aYi~~~a~ 86 (89)
T 1f1f_A 69 LSPLQIEDVAAYVVDQAE 86 (89)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 999999999999999987
No 436
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, dimer; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 1zy2_A*
Probab=46.86 E-value=9.8 Score=16.01 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=25.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHH-HEEEEEECCCH
Q ss_conf 235530477406799999999999829957-84788852310
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPA-QCRLIMIDPKM 496 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~-evkliliDPK~ 496 (806)
++||-|-||+||..+=.+| ...+|. +=.||-|+---
T Consensus 162 pvli~GE~GtGK~~~Ar~i-----H~~s~r~~~~fv~vnc~~ 198 (387)
T 1ny5_A 162 PVLITGESGVGKEVVARLI-----HKLSDRSKEPFVALNVAS 198 (387)
T ss_dssp CEEEECSTTSSHHHHHHHH-----HHHSTTTTSCEEEEETTT
T ss_pred CEEEECCCCCCHHHHHHHH-----HHCCCCCCCCCEEEECCC
T ss_conf 2899898984999999999-----965886799957875388
No 437
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=46.83 E-value=9.8 Score=16.02 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=14.0
Q ss_pred EEEEECCCCHHHHHHHHHH
Q ss_conf 3553047740679999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI 475 (806)
+.+-|..++|||+.+++|.
T Consensus 107 ~~l~Gp~~tGKS~f~~~i~ 125 (267)
T 1u0j_A 107 IWLFGPATTGKTNIAEAIA 125 (267)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998899887899999999
No 438
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=46.80 E-value=11 Score=15.51 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=22.9
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf 023553047740679999999999982
Q gi|254780799|r 455 PHLLIAGTTGSGKSVAINTMILSLLYR 481 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~iN~iI~SlLyk 481 (806)
..|++-|.||+|||--..+|.-.++-+
T Consensus 153 ~gl~l~G~~G~GKT~L~~ai~~~l~~~ 179 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEK 179 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 828998999985899999999999875
No 439
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=46.79 E-value=11 Score=15.51 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCC
Q ss_conf 489889999999997128974
Q gi|254780799|r 696 FVSDIEVEKVVSHLKTQGEAK 716 (806)
Q Consensus 696 ~v~~~ev~~v~~~~~~q~~~~ 716 (806)
-+||+|+..|+.|+++...|.
T Consensus 57 ~Lsd~ei~~l~~Yi~~l~~~~ 77 (80)
T 1wve_C 57 YVDDESLTQVAEYLSSLPAPA 77 (80)
T ss_dssp TSCHHHHHHHHHHHHHSCCC-
T ss_pred CCCHHHHHHHHHHHHHCCCCC
T ss_conf 889999999999999776888
No 440
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=46.77 E-value=11 Score=15.50 Aligned_cols=57 Identities=9% Similarity=0.151 Sum_probs=41.6
Q ss_pred HHHHHHHCCC--EEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHC-CCCCEEEECHHH
Q ss_conf 9999996598--50001422200117789999999997798680227-887267317125
Q gi|254780799|r 746 AVDIVLRDNK--ASISYIQRRLGIGYNRAASIIENMEEKGVIGPASS-TGKREILISSME 802 (806)
Q Consensus 746 a~~~v~~~~~--~s~s~lqr~~~igy~raar~~~~~e~~giv~~~~g-~~~r~vl~~~~~ 802 (806)
++.++.+... .+.+-|-+++.+--+...|+++.||++|+|.-... .-.|.+++.-.+
T Consensus 42 iL~~l~~~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~glI~r~~~~~D~R~~~i~lT~ 101 (127)
T 2frh_A 42 VLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNA 101 (127)
T ss_dssp HHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCS
T ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECH
T ss_conf 999998289998789999999798873699999999978977984037899858989998
No 441
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=46.70 E-value=11 Score=15.79 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=17.7
Q ss_pred EEEEEECCCCHHHHHHHHHHH
Q ss_conf 235530477406799999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~ 476 (806)
-++|-|..|+|||--||.++.
T Consensus 27 KIviiG~~~vGKSSLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999589999999971
No 442
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=46.63 E-value=6.5 Score=17.34 Aligned_cols=16 Identities=31% Similarity=0.667 Sum_probs=13.6
Q ss_pred EEEEEECCCCHHHHHH
Q ss_conf 2355304774067999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAI 471 (806)
Q Consensus 456 HLLIAGtTGSGKSV~i 471 (806)
.++.-|.|||||+-.+
T Consensus 104 ~i~aYGqtgSGKT~T~ 119 (372)
T 3b6u_A 104 TIFAYGQTGTGKTYTM 119 (372)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEEECCCCCCEEEC
T ss_conf 0880101588963873
No 443
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=46.62 E-value=9.9 Score=15.99 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=16.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHH
Q ss_conf 3553047740679999999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSL 478 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~Sl 478 (806)
..|+|..|||||--.+.+--.+
T Consensus 6 I~i~G~~GsGKTT~~~~L~~~l 27 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999959899999999998
No 444
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=46.60 E-value=11 Score=15.74 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=26.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHH----------HEEEEEECCCHHHHHHCC
Q ss_conf 35530477406799999999999829957----------847888523100111027
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPA----------QCRLIMIDPKMLELSVYD 503 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~----------evkliliDPK~vEls~Y~ 503 (806)
++|-|..|+|||--||.++.. .-++ ..+.+..+...+++.+++
T Consensus 9 I~vlG~~~vGKSsLi~r~~~~----~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D 61 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCEN----KFNDKHITTLGASFLTKKLNIGGKRVNLAIWD 61 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHC----CCCSSCCCCCSCEEEEEEEESSSCEEEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHC----CCCCCCCCCEEEEEEEEEEEECCCEEEEEEEE
T ss_conf 999999995999999999719----99986577213200357996389289999995
No 445
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=46.48 E-value=9.8 Score=16.02 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHHHC
Q ss_conf 48988999999999712
Q gi|254780799|r 696 FVSDIEVEKVVSHLKTQ 712 (806)
Q Consensus 696 ~v~~~ev~~v~~~~~~q 712 (806)
-+||+|++.|++|++++
T Consensus 63 ~lsdeei~~la~yi~SL 79 (80)
T 1ayg_A 63 NVTDAEAKQLAQWILSI 79 (80)
T ss_dssp CCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHC
T ss_conf 59999999999999974
No 446
>3niw_A Haloacid dehalogenase-like hydrolase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Bacteroides thetaiotaomicron}
Probab=46.33 E-value=7.6 Score=16.86 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=13.7
Q ss_pred HHHHHCCEEEEEEECCCCCCC
Q ss_conf 866414237999965777535
Q gi|254780799|r 619 QMARASGIHVIMATQRPSVDV 639 (806)
Q Consensus 619 q~ara~GiHli~aTqrPsvdv 639 (806)
+..++.||.+++||-||--.+
T Consensus 32 ~~l~~~g~~v~i~TGR~~~~~ 52 (279)
T 3niw_A 32 IRIQEQGIRLVLASGRPTYGI 52 (279)
T ss_dssp HHHHHTTCEEEEECSSCHHHH
T ss_pred HHHHHCCCEEEEECCCCHHHH
T ss_conf 999978999999999988999
No 447
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=46.29 E-value=10 Score=15.97 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=12.8
Q ss_pred ECCCCHHHHHHHHHHHHHC
Q ss_conf 3348988999999999712
Q gi|254780799|r 694 GPFVSDIEVEKVVSHLKTQ 712 (806)
Q Consensus 694 g~~v~~~ev~~v~~~~~~q 712 (806)
..-+||+||..||+|+++.
T Consensus 68 ~~~Lsd~di~~i~~yi~Sl 86 (87)
T 2zxy_A 68 LKGLSDAELKALADFILSH 86 (87)
T ss_dssp GGGCCHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHC
T ss_conf 4689999999999999975
No 448
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=46.20 E-value=12 Score=15.44 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=17.7
Q ss_pred CCEEE-EEECCCCHHHHHHHHHHHH
Q ss_conf 20235-5304774067999999999
Q gi|254780799|r 454 MPHLL-IAGTTGSGKSVAINTMILS 477 (806)
Q Consensus 454 MPHLL-IAGtTGSGKSV~iN~iI~S 477 (806)
.|=+. |+|..|||||---|.+.-.
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~~~ 45 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9889998898988999999999998
No 449
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=46.19 E-value=12 Score=15.44 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=20.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 2355304774067999999999998299578
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQ 486 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~e 486 (806)
.++|.|..|+|||-.||.+ ++..-+++
T Consensus 25 KI~vvG~~~vGKTSLi~~~----~~~~f~~~ 51 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRF----VQDHFDHN 51 (192)
T ss_dssp EEEEEECTTSSHHHHHHHH----HHCCCCTT
T ss_pred EEEEECCCCCCHHHHHHHH----HCCCCCCC
T ss_conf 9999998998999999999----72956788
No 450
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=46.12 E-value=11 Score=15.62 Aligned_cols=47 Identities=15% Similarity=0.330 Sum_probs=28.2
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHH-CCHH--HE----EEEEECCCHHHHHHCC
Q ss_conf 3553047740679999999999982-9957--84----7888523100111027
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYR-MTPA--QC----RLIMIDPKMLELSVYD 503 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk-~~P~--ev----kliliDPK~vEls~Y~ 503 (806)
++|-|..|+|||-.||.++..--.. ..|. ++ +...++-+.++|.+++
T Consensus 13 I~vlG~~~vGKTSli~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~D 66 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEE
T ss_conf 999998996989999999709877777787103057899999899799999998
No 451
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=46.08 E-value=6.3 Score=17.44 Aligned_cols=17 Identities=35% Similarity=0.548 Sum_probs=13.0
Q ss_pred EEEEEECCCCHHHHHHH
Q ss_conf 23553047740679999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAIN 472 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN 472 (806)
=++.-|.|||||+=-+-
T Consensus 137 tifaYGqTGSGKTyTm~ 153 (387)
T 2heh_A 137 TCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp EEEEESCTTSSHHHHHC
T ss_pred EEEEECCCCCCCCEECC
T ss_conf 69986886899985715
No 452
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=46.06 E-value=9.3 Score=16.20 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHHHHCC
Q ss_conf 489889999999997128
Q gi|254780799|r 696 FVSDIEVEKVVSHLKTQG 713 (806)
Q Consensus 696 ~v~~~ev~~v~~~~~~q~ 713 (806)
-+||+|+..|+.|+++|.
T Consensus 66 ~Lsd~ei~~v~aYv~~~a 83 (90)
T 1cyi_A 66 RLSEEEIQAVAEYVFKQA 83 (90)
T ss_dssp TSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999765
No 453
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli}
Probab=45.93 E-value=5.7 Score=17.80 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=7.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHH
Q ss_conf 468888732100588999999
Q gi|254780799|r 598 EMADLMMVARKDIESAVQRLA 618 (806)
Q Consensus 598 ElaDlmm~~~~~ve~~i~rla 618 (806)
|+|.-+=++...|-.-|.||-
T Consensus 32 ~IA~~lg~S~~tV~~Ri~rL~ 52 (163)
T 2gqq_A 32 ELSKRVGLSPTPCLERVRRLE 52 (163)
T ss_dssp GGGTSSSCCTTTSSSTHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
T ss_conf 999998909999999999999
No 454
>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Probab=45.83 E-value=12 Score=15.40 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=21.0
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHH-HEEEEEECCCHHHH
Q ss_conf 0020235530477406799999999999829957-84788852310011
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPA-QCRLIMIDPKMLEL 499 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~-evkliliDPK~vEl 499 (806)
+.||-.||.|+||- |-.-|+-.|.+..++ .|+-+.-+|...+.
T Consensus 2 ~~m~tVlVtGatG~-----iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~ 45 (253)
T 1xq6_A 2 ANLPTVLVTGASGR-----TGQIVYKKLKEGSDKFVAKGLVRSAQGKEK 45 (253)
T ss_dssp CSCCEEEEESTTSH-----HHHHHHHHHHHTTTTCEEEEEESCHHHHHH
T ss_pred CCCCEEEEECCCCH-----HHHHHHHHHHHCCCCEEEEEECCCHHHHHH
T ss_conf 99998999899778-----999999999967992799997178778865
No 455
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens}
Probab=45.82 E-value=6.6 Score=17.33 Aligned_cols=16 Identities=38% Similarity=0.673 Sum_probs=12.6
Q ss_pred EEEEEECCCCHHHHHH
Q ss_conf 2355304774067999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAI 471 (806)
Q Consensus 456 HLLIAGtTGSGKSV~i 471 (806)
.++.-|.|||||+=.+
T Consensus 108 ~i~aYGqTgSGKTyTm 123 (355)
T 3lre_A 108 TVLAYGATGAGKTHTM 123 (355)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEECCCCCCCCCCCCC
T ss_conf 7985257899987504
No 456
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=45.71 E-value=8.2 Score=16.60 Aligned_cols=17 Identities=35% Similarity=0.294 Sum_probs=11.0
Q ss_pred CCHHHHHHHHHHHHHCC
Q ss_conf 89889999999997128
Q gi|254780799|r 697 VSDIEVEKVVSHLKTQG 713 (806)
Q Consensus 697 v~~~ev~~v~~~~~~q~ 713 (806)
.+|..++.-.+|+++++
T Consensus 466 ~~dp~~~~~~~~~~~~~ 482 (540)
T 2vl7_A 466 VSDDMVRKRIERLSKLT 482 (540)
T ss_dssp TTSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC
T ss_conf 99899999999999844
No 457
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural genomics, PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=45.68 E-value=12 Score=15.39 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=23.4
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 00202355304774067999999999998
Q gi|254780799|r 452 ARMPHLLIAGTTGSGKSVAINTMILSLLY 480 (806)
Q Consensus 452 akMPHLLIAGtTGSGKSV~iN~iI~SlLy 480 (806)
..|+=+-|.|.-||||+--+..+|--|-=
T Consensus 2 n~mki~~I~G~~gSGKTTLi~~Li~~L~~ 30 (169)
T 1xjc_A 2 NAMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 97659999819999899999999999997
No 458
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=45.64 E-value=9.2 Score=16.24 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHHHCCC
Q ss_conf 4898899999999971289
Q gi|254780799|r 696 FVSDIEVEKVVSHLKTQGE 714 (806)
Q Consensus 696 ~v~~~ev~~v~~~~~~q~~ 714 (806)
-+||+|+..|+.|+++|.+
T Consensus 64 ~Ls~~ei~~v~aYi~~~a~ 82 (85)
T 1gdv_A 64 RLVDEDIEDAANYVLSQSE 82 (85)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999977
No 459
>1cu1_A Protein (protease/helicase NS3); bifunctional,protease-helicase, hydrolase; 2.50A {Hepatitis c virus} SCOP: b.47.1.3 c.37.1.14 c.37.1.14
Probab=45.59 E-value=9.7 Score=16.05 Aligned_cols=101 Identities=17% Similarity=0.227 Sum_probs=54.1
Q ss_pred CEEEEEHHHHHHHHHHCCCHHHH--HHHHHHHHHHHC-CEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHC
Q ss_conf 86877634468888732100588--999999866414-237999965777535543554110251587645866421233
Q gi|254780799|r 590 PYIVVVIDEMADLMMVARKDIES--AVQRLAQMARAS-GIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTIL 666 (806)
Q Consensus 590 p~ivviiDElaDlmm~~~~~ve~--~i~rlaq~ara~-GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~dSrtil 666 (806)
-|=|||+||.-.. +.+. .+.-|.++++-. -..+|+.|=.|.... ..++|..-....+...+=.-..
T Consensus 297 ~ysvIImDEaHER------d~~SDlllGll~~~~~~~~~lkvIlMSATppg~~-----~~p~p~i~~~~~~~~~~I~~~~ 365 (645)
T 1cu1_A 297 AYDIIICDECHST------DSTTILGIGTVLDQAETAGARLVVLATATPPGSV-----TVPHPNIEEVALSNTGEIPFYG 365 (645)
T ss_dssp SCSEEEEETTTCC------SHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTCC-----CCCCTTEEEEECBSCSSEEETT
T ss_pred CCCEEEEECCCCC------CHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-----CCCCCEEECCCCCCCEEEHHHH
T ss_conf 8889999586018------8889999999999987488827999567657433-----5789747016899754852223
Q ss_pred CCCCHHHHCCCCCEE-EECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCC
Q ss_conf 886457865887547-7368983258883348988999999999712897
Q gi|254780799|r 667 GEQGAEQLLGQGDML-YMTGGGRVQRIHGPFVSDIEVEKVVSHLKTQGEA 715 (806)
Q Consensus 667 d~~gae~Llg~gdml-~~~~~~~~~r~~g~~v~~~ev~~v~~~~~~q~~~ 715 (806)
...+.|. +-.||.| |+|+ -.|++++.+.+++.+..
T Consensus 366 ~~~~~e~-i~~GdILVFLPG-------------~~EI~~la~~L~~~g~~ 401 (645)
T 1cu1_A 366 KAIPIEA-IRGGRHLIFCHS-------------KKKCDELAAKLSGLGIN 401 (645)
T ss_dssp EEECGGG-TSSSEEEEECSS-------------SHHHHHHHHHHHHTTCC
T ss_pred HCCCCEE-ECCCCEEEECCC-------------HHHHHHHHHHHHCCCCC
T ss_conf 0668361-479989999796-------------89999999997637994
No 460
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A*
Probab=45.54 E-value=7.4 Score=16.92 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=16.6
Q ss_pred CCEEEEEECCCCHHHHHHHHH
Q ss_conf 202355304774067999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~i 474 (806)
|+=..|-|.-|||||-.-.-+
T Consensus 1 m~iI~i~G~~GsGKSTva~~L 21 (173)
T 3kb2_A 1 MTLIILEGPDCCFKSTVAAKL 21 (173)
T ss_dssp -CEEEEECSSSSSHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
T ss_conf 909999789999999999999
No 461
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=45.52 E-value=11 Score=15.50 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=17.2
Q ss_pred EEEEEECCCCHHHHHHHHHHH
Q ss_conf 235530477406799999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~ 476 (806)
-++|-|..|+|||--+|.++.
T Consensus 8 Ki~vvG~~~vGKSSli~~~~~ 28 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799689999999984
No 462
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=45.50 E-value=12 Score=15.37 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=46.2
Q ss_pred CHHHHHCCCC--CHHHCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHH------HHHHHHHCCHHHEEEEEEC
Q ss_conf 2134302210--00210456666667854100202355304774067999999------9999982995784788852
Q gi|254780799|r 424 SRVFEKNQCD--LAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTM------ILSLLYRMTPAQCRLIMID 493 (806)
Q Consensus 424 s~~f~~s~~~--L~iaLGKdI~G~pvv~DLakMPHLLIAGtTGSGKSV~iN~i------I~SlLyk~~P~evkliliD 493 (806)
...|+.+..+ ..--.|..=.-.-+...|..||+.-+.|-.-+|||--+|+| |.|--+..+-+.+..+..+
T Consensus 126 n~~f~~~~~~~p~~~~~g~~g~~~~~~l~lk~~a~V~lvG~PNaGKSTLlN~Lt~~k~~I~~~~ftTt~~~ig~~~~~ 203 (342)
T 1lnz_A 126 NSRFATPANPAPQLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD 203 (342)
T ss_dssp GGGSCBTTBSSCCCCCCCCCCCEEEEEEEEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS
T ss_pred CHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEECCEEEEEEC
T ss_conf 402206776897535789866078999532445877999966888008999986898421179996354315279915
No 463
>3f94_A Beta-glucosidase; (alpha/beta)8 barrel, (alpha/beta)6 sheet, hydrolase; 2.30A {Pseudoalteromonas SP} PDB: 3f93_A
Probab=45.43 E-value=12 Score=15.36 Aligned_cols=24 Identities=4% Similarity=0.112 Sum_probs=11.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 563256654578999999742486
Q gi|254780799|r 325 MTFSPKVMQNNACTLKSVLSDFGI 348 (806)
Q Consensus 325 ~~~s~eeL~~nA~lLE~tL~dFGV 348 (806)
..++++.|++..+.+-.....+|.
T Consensus 340 G~i~e~rid~av~RIL~~k~~~Gl 363 (822)
T 3f94_A 340 GVIAESRINDAVRRFLRAKIRWGV 363 (822)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 899899985999999999998488
No 464
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=45.43 E-value=6.6 Score=17.31 Aligned_cols=16 Identities=44% Similarity=0.773 Sum_probs=12.7
Q ss_pred CEEEEEECCCCHHHHH
Q ss_conf 0235530477406799
Q gi|254780799|r 455 PHLLIAGTTGSGKSVA 470 (806)
Q Consensus 455 PHLLIAGtTGSGKSV~ 470 (806)
|.+.+-|..|||||--
T Consensus 3 ~~Iil~G~~GsGKSTi 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CCEEEECCCCCCHHHH
T ss_conf 9899987999988999
No 465
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=45.33 E-value=12 Score=15.35 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=26.2
Q ss_pred EEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEE
Q ss_conf 785410020235530477406799999999999829957847
Q gi|254780799|r 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCR 488 (806)
Q Consensus 447 vv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evk 488 (806)
+-.++.+==++-|-|..|||||--++.|.- | .+|++=+
T Consensus 24 is~~i~~Ge~~~i~G~nGsGKSTLlk~i~G--l--~~p~~G~ 61 (253)
T 2nq2_C 24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLG--I--HRPIQGK 61 (253)
T ss_dssp EEEEEETTCEEEEECCSSSSHHHHHHHHTT--S--SCCSEEE
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHHC--C--CCCCCCE
T ss_conf 466887998999988999969999999956--8--8998758
No 466
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=45.33 E-value=11 Score=15.54 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=17.7
Q ss_pred EEEEECCCCHHHHHHHHHHH
Q ss_conf 35530477406799999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~ 476 (806)
++|-|..|+|||-.||.++.
T Consensus 8 i~vlG~~~vGKTsli~~~~~ 27 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999598999999984
No 467
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacteroides thetaiotaomicron vpi-5482}
Probab=45.27 E-value=7.1 Score=17.08 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=11.4
Q ss_pred EEEHHHHHHCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf 0001422200117789999999997798680
Q gi|254780799|r 757 SISYIQRRLGIGYNRAASIIENMEEKGVIGP 787 (806)
Q Consensus 757 s~s~lqr~~~igy~raar~~~~~e~~giv~~ 787 (806)
|..-|...|++.-+-.-+-+..||.+|+|--
T Consensus 37 s~~~La~~~~VSr~tVr~Al~~L~~~G~i~~ 67 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYLQSQEVIYN 67 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHHTTTSEEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 8999999969898999999999998894799
No 468
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=45.10 E-value=12 Score=15.46 Aligned_cols=20 Identities=25% Similarity=0.594 Sum_probs=16.1
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 23553047740679999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI 475 (806)
-+.|.|..|||||--+|.++
T Consensus 18 livi~GPSG~GK~tL~~~L~ 37 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALL 37 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999999999999999998
No 469
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=44.92 E-value=12 Score=15.39 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=17.4
Q ss_pred EEEEECCCCHHHHHHHHHHH
Q ss_conf 35530477406799999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~ 476 (806)
+++-|..|+|||-.+|.++.
T Consensus 11 i~lvG~~~vGKSsli~rl~~ 30 (207)
T 1vg8_A 11 VIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999799299999999961
No 470
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=44.91 E-value=12 Score=15.39 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=18.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCHHHEE
Q ss_conf 35530477406799999999999829957847
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCR 488 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI~SlLyk~~P~evk 488 (806)
+.|.|..||||+.-++.+ .+..|+...
T Consensus 8 ivi~GpSG~GK~tl~~~L-----~~~~~~~~~ 34 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTL-----ITKHPDRFA 34 (180)
T ss_dssp EEEECCTTSSHHHHHHHH-----HHHCTTTEE
T ss_pred EEEECCCCCCHHHHHHHH-----HHHCCCCEE
T ss_conf 999999989989999999-----972976766
No 471
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=44.86 E-value=11 Score=15.53 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=20.1
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 020235530477406799999999
Q gi|254780799|r 453 RMPHLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 453 kMPHLLIAGtTGSGKSV~iN~iI~ 476 (806)
.+||+|.-|--|.||.-+.+.+--
T Consensus 54 ~~~s~lf~GPPG~GKTTlA~iiA~ 77 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 888489889899879999999998
No 472
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=44.85 E-value=3.1 Score=19.80 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=15.4
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 23553047740679999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI 475 (806)
-+||-|.-|||||-+.-.+|
T Consensus 36 ~v~i~G~SG~GKStl~l~li 55 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELV 55 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998289999899999999
No 473
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=44.77 E-value=12 Score=15.39 Aligned_cols=176 Identities=22% Similarity=0.274 Sum_probs=84.3
Q ss_pred EEEEECCCCCCEEEEHHHCCCHHHHHCC-CCCHHHCCC-CCCCCEEEEECCCC-CEEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 5553024566238734230721343022-100021045-66666678541002-02355304774067999999999998
Q gi|254780799|r 404 IGIELPNDIRETVMLRDLIVSRVFEKNQ-CDLAINLGK-SIEGKPIIADLARM-PHLLIAGTTGSGKSVAINTMILSLLY 480 (806)
Q Consensus 404 VGIEiPN~~r~~V~lreil~s~~f~~s~-~~L~iaLGK-dI~G~pvv~DLakM-PHLLIAGtTGSGKSV~iN~iI~SlLy 480 (806)
|=+|.|| |.|.||..-+.-++.= ..+-..|.. +.. ....+. .++|.-|-.|+|||-..+++-..+-
T Consensus 2 ~~~e~P~-----v~~~dI~Gl~~~k~~l~e~i~~pl~~~~~~-----~~~~~p~~gvLL~GPpGtGKT~la~aiA~e~~- 70 (322)
T 1xwi_A 2 IVIERPN-----VKWSDVAGLEGAKEALKEAVILPIKFPHLF-----TGKRTPWRGILLFGPPGTGKSYLAKAVATEAN- 70 (322)
T ss_dssp CEEECCC-----CCGGGSCSCHHHHHHHHHHHHHHHHCGGGS-----CTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-
T ss_pred EEECCCC-----CCHHHHCCHHHHHHHHHHHHHHHHHCHHHH-----CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC-
T ss_conf 3754899-----999994575999999999999997399987-----27999998168889899988999999999705-
Q ss_pred HCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 29957847888523100111027703431223343045668999999999999999987089968999999998874478
Q gi|254780799|r 481 RMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGK 560 (806)
Q Consensus 481 k~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY~l~a~~~vRni~~yN~k~~~~~~~~~ 560 (806)
..-|+.|++. .|+..-+-+..+....+ |. .++..
T Consensus 71 -----~~~~~~v~~~-----------~l~s~~~g~~~~~i~~~------------------------f~----~a~~~-- 104 (322)
T 1xwi_A 71 -----NSTFFSISSS-----------DLVSKWLGESEKLVKNL------------------------FQ----LAREN-- 104 (322)
T ss_dssp -----SCEEEEEECC-----------SSCCSSCCSCHHHHHHH------------------------HH----HHHHT--
T ss_pred -----CCCEEEEEHH-----------HHHHCCCCHHHHHHHHH------------------------HH----HHHHC--
T ss_conf -----7957997779-----------97572330999999999------------------------99----99863--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHCCCHH--HHHH---HHHHHHH----HHCCEEEEEE
Q ss_conf 66775446776545432223322323469868776344688887321005--8899---9999866----4142379999
Q gi|254780799|r 561 KFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDI--ESAV---QRLAQMA----RASGIHVIMA 631 (806)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ivviiDElaDlmm~~~~~v--e~~i---~rlaq~a----ra~GiHli~a 631 (806)
-| -|+++||+-.+.......- +..- +-+.++- .--+|=+|.|
T Consensus 105 ----------------------------~p-~ii~ideid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vivi~a 155 (322)
T 1xwi_A 105 ----------------------------KP-SIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA 155 (322)
T ss_dssp ----------------------------SS-EEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEE
T ss_pred ----------------------------CC-CEEEECCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf ----------------------------99-6687420355522556555507889999999999741346897699615
Q ss_pred ECCCCCCCCCHHHHHCCCCEEEEEECCCCCCHHHCC
Q ss_conf 657775355435541102515876458664212338
Q gi|254780799|r 632 TQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILG 667 (806)
Q Consensus 632 TqrPsvdvitg~ikan~p~riaf~v~s~~dSrtild 667 (806)
|.||. -|.--+.--|.-+|-|..-+.-+-+-||.
T Consensus 156 Tn~p~--~ld~al~rRfd~~i~i~~Pd~~~R~~Il~ 189 (322)
T 1xwi_A 156 TNIPW--VLDSAIRRRFEKRIYIPLPEPHARAAMFK 189 (322)
T ss_dssp ESCTT--TSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred CCCCH--HCCHHHHHHCCEEEEECCCCHHHHHHHHH
T ss_conf 78812--14899980255899968969999999999
No 474
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=44.76 E-value=7.8 Score=16.74 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=6.9
Q ss_pred CCHHHHHHHHHHHHHC
Q ss_conf 8988999999999712
Q gi|254780799|r 697 VSDIEVEKVVSHLKTQ 712 (806)
Q Consensus 697 v~~~ev~~v~~~~~~q 712 (806)
.||+|+..|++|+++|
T Consensus 87 Lsd~ei~~laaYi~sl 102 (103)
T 2zzs_A 87 LSDDDIANLAAYYSSL 102 (103)
T ss_dssp CCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHC
T ss_conf 9999999999999875
No 475
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) class, TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima MSB8}
Probab=44.68 E-value=12 Score=15.28 Aligned_cols=37 Identities=16% Similarity=0.352 Sum_probs=24.6
Q ss_pred EEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEE
Q ss_conf 85410020235530477406799999999999829957847
Q gi|254780799|r 448 IADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCR 488 (806)
Q Consensus 448 v~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evk 488 (806)
-.++.+==.+-|.|-.|||||..++.|-- |+ +|+.=+
T Consensus 23 s~~i~~Ge~~~llGpsGsGKsTll~~iaG--l~--~p~~G~ 59 (359)
T 2yyz_A 23 SFEVKDGEFVALLGPSGCGKTTTLLMLAG--IY--KPTSGE 59 (359)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHHT--SS--CCSEEE
T ss_pred EEEECCCCEEEEECCCCCHHHHHHHHHHC--CC--CCCCEE
T ss_conf 86989998999999999869999999975--99--988619
No 476
>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A
Probab=44.65 E-value=12 Score=15.28 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCC
Q ss_conf 8999999866414237999965777535
Q gi|254780799|r 612 SAVQRLAQMARASGIHVIMATQRPSVDV 639 (806)
Q Consensus 612 ~~i~rlaq~ara~GiHli~aTqrPsvdv 639 (806)
....+.-++.+..|+|+++||=||-..+
T Consensus 24 ~~~~~~l~~l~~~g~~v~i~TGR~~~~~ 51 (271)
T 1rlm_A 24 PRFMAQYQELKKRGIKFVVASGNQYYQL 51 (271)
T ss_dssp HHHHHHHHHHHHHTCEEEEECSSCHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHH
T ss_conf 9999999999977998999869988999
No 477
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=44.58 E-value=9.5 Score=16.13 Aligned_cols=150 Identities=15% Similarity=0.257 Sum_probs=79.4
Q ss_pred EEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEE--------------------EEE--CCCHH-HHHHCCC
Q ss_conf 854100202355304774067999999999998299578478--------------------885--23100-1110277
Q gi|254780799|r 448 IADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRL--------------------IMI--DPKML-ELSVYDG 504 (806)
Q Consensus 448 v~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkl--------------------ili--DPK~v-Els~Y~~ 504 (806)
-.++.+==-+-+.|.-|||||-.+|+|.-- .+|++=+. .++ +|... .|++++.
T Consensus 26 s~~i~~Gei~~liGpNGaGKSTll~~i~Gl----~~p~~G~I~~~G~~i~~~~~~~~~~~gi~~~~q~~~l~~~ltv~en 101 (240)
T 1ji0_A 26 DLKVPRGQIVTLIGANGAGKTTTLSAIAGL----VRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYEN 101 (240)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTS----SCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHH
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCC----CCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCCCHHHH
T ss_conf 579879979999999998499999999779----7789748999999746774878863557997676503786589998
Q ss_pred CHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0343122334304566899999999999999998708996899999-999887447866775446776545432223322
Q gi|254780799|r 505 IPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNL-KVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEH 583 (806)
Q Consensus 505 iPHLl~pVvTd~~kA~~aL~w~V~EMe~RY~l~a~~~vRni~~yN~-k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (806)
+-.-. .--.+.......+.|+..++. +..-+.+--++++.+=++ |+.-|++-
T Consensus 102 ~~~~~-~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~LSGG~~Qrv~iAraL------------------------- 154 (240)
T 1ji0_A 102 LMMGA-YNRKDKEGIKRDLEWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRAL------------------------- 154 (240)
T ss_dssp HHGGG-TTCCCSSHHHHHHHHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHH-------------------------
T ss_pred HHHHH-HHCCCHHHHHHHHHHHHHHHC-CHHHHHHCCHHHCCHHHHHHHHHHHHH-------------------------
T ss_conf 88888-623888999999999998640-778887384423999999999999999-------------------------
Q ss_pred CCCCCCCEEEEEHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf 323469868776344-68888732100588999999866414237999965777
Q gi|254780799|r 584 FDFQHMPYIVVVIDE-MADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 (806)
Q Consensus 584 ~~~~~lp~ivviiDE-laDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPs 636 (806)
-.=|. +++.|| .+-|=-.+..++-+.|.+|++ .|+-.|+.|+...
T Consensus 155 ---~~~P~-lllLDEPt~gLD~~~~~~i~~~i~~l~~----~g~til~vtHdl~ 200 (240)
T 1ji0_A 155 ---MSRPK-LLMMDEPSLGLAPILVSEVFEVIQKINQ----EGTTILLVEQNAL 200 (240)
T ss_dssp ---TTCCS-EEEEECTTTTCCHHHHHHHHHHHHHHHH----TTCCEEEEESCHH
T ss_pred ---HHCCC-EEEECCCCCCCCHHHHHHHHHHHHHHHH----CCCEEEEEECCHH
T ss_conf ---85998-1357587546999999999999999984----4999999938789
No 478
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=44.54 E-value=7.6 Score=16.85 Aligned_cols=15 Identities=27% Similarity=0.705 Sum_probs=13.0
Q ss_pred EEEEEECCCCHHHHH
Q ss_conf 235530477406799
Q gi|254780799|r 456 HLLIAGTTGSGKSVA 470 (806)
Q Consensus 456 HLLIAGtTGSGKSV~ 470 (806)
+++|-|..|||||.-
T Consensus 6 rI~i~G~PGsGK~T~ 20 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQ 20 (220)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
T ss_conf 899989999987999
No 479
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A*
Probab=44.49 E-value=12 Score=15.26 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=17.9
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 23553047740679999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI 475 (806)
.++|-|..|+|||--||.+.
T Consensus 31 KIvivG~~~vGKSSLi~~l~ 50 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999986899999997
No 480
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor protein; HET: ADP; 3.25A {Neurospora crassa}
Probab=44.13 E-value=7.1 Score=17.08 Aligned_cols=15 Identities=47% Similarity=0.749 Sum_probs=11.7
Q ss_pred EEEEECCCCHHHHHH
Q ss_conf 355304774067999
Q gi|254780799|r 457 LLIAGTTGSGKSVAI 471 (806)
Q Consensus 457 LLIAGtTGSGKSV~i 471 (806)
++.=|.|||||+=-+
T Consensus 140 i~aYGqTGSGKTyTm 154 (443)
T 2owm_A 140 IFAYGQTGSGKSYTM 154 (443)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred EEEECCCCCCCCCCC
T ss_conf 997688899988524
No 481
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=43.86 E-value=13 Score=15.19 Aligned_cols=81 Identities=19% Similarity=0.261 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHH-HCCCCEEEEEECCCCCCHHHCCCCCHHHHCCCCCEEEECCC
Q ss_conf 00588999999866414237999965777535543554-11025158764586642123388645786588754773689
Q gi|254780799|r 608 KDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIK-ANFPTRISFQVSSKIDSRTILGEQGAEQLLGQGDMLYMTGG 686 (806)
Q Consensus 608 ~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ik-an~p~riaf~v~s~~dSrtild~~gae~Llg~gdml~~~~~ 686 (806)
.+.++.|.|| +..||++++||-||-..+. .+++ -++..-.. .+...+|| .+|-+..
T Consensus 25 ~~~~~~l~~l----~~~gi~v~i~TGR~~~~~~-~~~~~l~~~~~~~----------~~i~~nGa--------~i~~~~~ 81 (282)
T 1rkq_A 25 PAVKNAIAAA----RARGVNVVLTTGRPYAGVH-NYLKELHMEQPGD----------YCITYNGA--------LVQKAAD 81 (282)
T ss_dssp HHHHHHHHHH----HHTTCEEEEECSSCGGGTH-HHHHHTTCCSTTC----------EEEEGGGT--------EEEETTT
T ss_pred HHHHHHHHHH----HHCCCEEEEECCCCHHHHH-HHHHHHCCCCCCC----------EEEEECCE--------EEECCCH
T ss_conf 9999999999----9889999999899789999-9999847768997----------89993872--------5651420
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 832588833489889999999997128
Q gi|254780799|r 687 GRVQRIHGPFVSDIEVEKVVSHLKTQG 713 (806)
Q Consensus 687 ~~~~r~~g~~v~~~ev~~v~~~~~~q~ 713 (806)
++ .+.-...+.+++..+.++.+...
T Consensus 82 ~~--~i~~~~~~~~~~~~~~~~~~~~~ 106 (282)
T 1rkq_A 82 GS--TVAQTALSYDDYRFLEKLSREVG 106 (282)
T ss_dssp CC--EEEECCBCHHHHHHHHHHHHHHT
T ss_pred HH--HHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 34--45541002778899999999727
No 482
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* 2a5g_A* 2w83_A*
Probab=43.84 E-value=13 Score=15.19 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=17.6
Q ss_pred EEEEEECCCCHHHHHHHHHHH
Q ss_conf 235530477406799999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMIL 476 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~ 476 (806)
.++|.|--|+|||--+|.+..
T Consensus 2 Ki~ivG~~~vGKTsLi~~~~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999888999999960
No 483
>3hb7_A Isochorismatase hydrolase; PSI, MCSG, structural genomics, midwest center for structural genomics; 2.30A {Alkaliphilus metalliredigens qymf}
Probab=43.28 E-value=13 Score=15.13 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHHHCC---EEEEEEECCCC
Q ss_conf 1005889999998664142---37999965777
Q gi|254780799|r 607 RKDIESAVQRLAQMARASG---IHVIMATQRPS 636 (806)
Q Consensus 607 ~~~ve~~i~rlaq~ara~G---iHli~aTqrPs 636 (806)
+..+...|.||.+.+|++| ||.+..++-++
T Consensus 31 ~~~i~~~i~~l~~~~r~~~~~~i~v~~~~~~~~ 63 (204)
T 3hb7_A 31 GETIIPDLQKIFEWVRGREGDDIHLVHIQEAHR 63 (204)
T ss_dssp GGGGHHHHHHHHHHHHHSSSSSEEEEEEEECBC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 899999999999999983489828999860456
No 484
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=43.27 E-value=9.6 Score=16.09 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHHCC
Q ss_conf 489889999999997128
Q gi|254780799|r 696 FVSDIEVEKVVSHLKTQG 713 (806)
Q Consensus 696 ~v~~~ev~~v~~~~~~q~ 713 (806)
-.||+||..|++|+++|.
T Consensus 69 ~Lsd~ei~~l~~Yi~~~~ 86 (91)
T 1ls9_A 69 RLDEDDIEAVSNYVYDQA 86 (91)
T ss_dssp TSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC
T ss_conf 799999999999999985
No 485
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=43.06 E-value=12 Score=15.41 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=26.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHH---------EEEEEECCCHHHHHHCC
Q ss_conf 2355304774067999999999998299578---------47888523100111027
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQ---------CRLIMIDPKMLELSVYD 503 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~e---------vkliliDPK~vEls~Y~ 503 (806)
.++|=|..|+|||--+|..+. ..-+++ .+.+.++.+.+.|.+++
T Consensus 20 KiviiG~~~vGKTsli~r~~~----~~f~~~~~~Ti~~~~~~~i~~~~~~~~l~i~D 72 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAN----DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYD 72 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHH----SSCCCSCCCSSCCCEEEEEESSSCEEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHC----CCCCCCCCCEEEEEEEEEEEECCEEEEEEECC
T ss_conf 999999999799999999960----85787779825678889999999899997346
No 486
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=43.05 E-value=13 Score=15.10 Aligned_cols=190 Identities=16% Similarity=0.244 Sum_probs=89.3
Q ss_pred EEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHH-HHHHCCC-C---H--HHHCCCCCCHHHH
Q ss_conf 785410020235530477406799999999999829957847888523100-1110277-0---3--4312233430456
Q gi|254780799|r 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML-ELSVYDG-I---P--NLLTPVVTNPQKA 519 (806)
Q Consensus 447 vv~DLakMPHLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~v-Els~Y~~-i---P--HLl~pVvTd~~kA 519 (806)
+-.++.+==.+-|-|-.|||||..++.|-- | .+|++=+ |.+|=+-+ .++.+.. | | .-|-|--|=-..-
T Consensus 34 vsl~i~~Ge~~~llGpsGsGKSTllr~iaG-l---~~p~~G~-I~~~g~~v~~~~~~~r~ig~vfQ~~~Lfp~ltV~eNi 108 (355)
T 1z47_A 34 VSFQIREGEMVGLLGPSGSGKTTILRLIAG-L---ERPTKGD-VWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNV 108 (355)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHT-S---SCCSEEE-EEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHH
T ss_pred CEEEECCCCEEEEECCCCCHHHHHHHHHHC-C---CCCCCEE-EEECCEECCCCCHHHCCEEEECCCCCCCCCCCHHHHH
T ss_conf 365899998999999998459999999975-9---9888549-9999999999997888947977687437898599999
Q ss_pred HHHHH---HHHHHHHHH-HHHHHHCCCCCH--------HHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68999---999999999-999987089968--------999-99999887447866775446776545432223322323
Q gi|254780799|r 520 VTVLK---WLVCEMEER-YQKMSKIGVRNI--------DGF-NLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDF 586 (806)
Q Consensus 520 ~~aL~---w~V~EMe~R-Y~l~a~~~vRni--------~~y-N~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (806)
..+|+ |--.|.++| -+++...|..+. .|= -+|+.-|++-
T Consensus 109 ~~~l~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~p~~LSGGq~QRValARaL---------------------------- 160 (355)
T 1z47_A 109 SFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARAL---------------------------- 160 (355)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHH----------------------------
T ss_conf 8787605689999999999998766976676199425999999999999997----------------------------
Q ss_pred CCCCEEEEEHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHCCCCEEEEEECCCC----C
Q ss_conf 469868776344-68888732100588999999866414237999965777535543554110251587645866----4
Q gi|254780799|r 587 QHMPYIVVVIDE-MADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKI----D 661 (806)
Q Consensus 587 ~~lp~ivviiDE-laDlmm~~~~~ve~~i~rlaq~ara~GiHli~aTqrPsvdvitg~ikan~p~riaf~v~s~~----d 661 (806)
-.=|-|++ .|| ++-|=-....++...|.+| .|..|+-.|+.|.-+.- =.-+--||++--.-++ .
T Consensus 161 ~~~P~lll-lDEP~s~LD~~~~~~l~~~l~~l---~~~~g~t~i~vTHd~~e-------a~~l~dri~vm~~G~i~~~g~ 229 (355)
T 1z47_A 161 APRPQVLL-FDEPFAAIDTQIRRELRTFVRQV---HDEMGVTSVFVTHDQEE-------ALEVADRVLVLHEGNVEQFGT 229 (355)
T ss_dssp TTCCSEEE-EESTTCCSSHHHHHHHHHHHHHH---HHHHTCEEEEECSCHHH-------HHHHCSEEEEEETTEEEEEEC
T ss_pred HCCCCEEE-ECCCCCCCCHHHHHHHHHHHHHH---HHHCCCEEEEECCCHHH-------HHHHCCEEEEEECCEEEEECC
T ss_conf 46998388-75864437999999999999999---98509999999788999-------998699999998999999869
Q ss_pred CHHHCCCCC---HHHHCCCCCE
Q ss_conf 212338864---5786588754
Q gi|254780799|r 662 SRTILGEQG---AEQLLGQGDM 680 (806)
Q Consensus 662 Srtild~~g---ae~Llg~gdm 680 (806)
...+.+.+- +.+++|....
T Consensus 230 ~~el~~~P~~~~va~~~G~~Ni 251 (355)
T 1z47_A 230 PEEVYEKPGTLFVASFIGESNV 251 (355)
T ss_dssp HHHHHHSCSSHHHHHHTTTCEE
T ss_pred HHHHHHCCCCHHHHHHCCCCCC
T ss_conf 9999878999799997099767
No 487
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=42.97 E-value=13 Score=15.10 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=27.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHH-HHHH----CCHH--HEEEEEECCCHHHHHHCC
Q ss_conf 2355304774067999999999-9982----9957--847888523100111027
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILS-LLYR----MTPA--QCRLIMIDPKMLELSVYD 503 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~S-lLyk----~~P~--evkliliDPK~vEls~Y~ 503 (806)
-+++-|..|+|||-.||.+... --+. .+.. -.|-+.+|-+.+.+.+++
T Consensus 39 KIvlvG~~~vGKSsLi~r~~~~~~~~~~~~~~~~~d~~~k~i~i~~~~~~l~~~d 93 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLD 93 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCEEEEEEEEE
T ss_conf 9999996998889999999838777667889646999999999875777899983
No 488
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, atomic resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=42.90 E-value=12 Score=15.30 Aligned_cols=16 Identities=25% Similarity=0.318 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHHHC
Q ss_conf 8988999999999712
Q gi|254780799|r 697 VSDIEVEKVVSHLKTQ 712 (806)
Q Consensus 697 v~~~ev~~v~~~~~~q 712 (806)
+||+|++.|++|+.+|
T Consensus 55 Ls~~ei~~l~~yl~~~ 70 (71)
T 1c75_A 55 AKGAEAEAVAAWLAEK 70 (71)
T ss_dssp SCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHC
T ss_conf 8999999999999973
No 489
>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=42.84 E-value=13 Score=15.08 Aligned_cols=15 Identities=7% Similarity=0.171 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHHHC
Q ss_conf 988999999999712
Q gi|254780799|r 698 SDIEVEKVVSHLKTQ 712 (806)
Q Consensus 698 ~~~ev~~v~~~~~~q 712 (806)
+.++++++++.+++.
T Consensus 133 ~~~~l~~~i~~l~~~ 147 (171)
T 2e1c_A 133 NSEELNNFLDLIGSI 147 (171)
T ss_dssp SHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHCC
T ss_conf 999999999998368
No 490
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Probab=42.79 E-value=13 Score=15.08 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=0.0
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 23553047740679999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI 475 (806)
.++|-|..|+|||--+|.++
T Consensus 22 KI~vvG~~~vGKTsLi~r~~ 41 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999959987899999998
No 491
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=42.74 E-value=13 Score=15.07 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEE-----EEECCEEEEEEEEECCCCCHHHHHH
Q ss_conf 256654578999999742486328998-----4104424444432147863999997
Q gi|254780799|r 328 SPKVMQNNACTLKSVLSDFGIQGEIVN-----VRPGPVITLYELEPAPGIKSSRIIG 379 (806)
Q Consensus 328 s~eeL~~nA~lLE~tL~dFGVe~~Vv~-----v~pGPVVTrYEi~PApGVKvSKI~n 379 (806)
|+++|.+ |.++..+.|+...++. -.+-.++|.--|-|+|--++.+|++
T Consensus 63 ~e~~l~~----l~~~a~~~~l~~~~v~DAG~Tei~~gt~TvlaigP~~~~~id~itg 115 (120)
T 1xty_A 63 SLDEIIS----RAKKAETMNLPFSIIEDAGKTQLEPGTITCLGIGPAPENLVDSITG 115 (120)
T ss_dssp SHHHHHH----HHHHHHHTTCCEEEEECCSSSSSCTTCEEEEEEEEEEHHHHHHHHT
T ss_pred CHHHHHH----HHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEECCCCHHHHHHHHC
T ss_conf 9999999----9999998799889998389750089986899978788889988638
No 492
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=42.64 E-value=13 Score=15.06 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=0.0
Q ss_pred EEEEECCCCHHHHHHHHHH
Q ss_conf 3553047740679999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI 475 (806)
++|-|..|+|||-.||.++
T Consensus 31 IvvvG~~~vGKTsLi~r~~ 49 (196)
T 2atv_A 31 LAIFGRAGVGKSALVVRFL 49 (196)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999978999999997
No 493
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=42.61 E-value=13 Score=15.06 Aligned_cols=19 Identities=32% Similarity=0.707 Sum_probs=0.0
Q ss_pred EEEEEECCCCHHHHHHHHH
Q ss_conf 2355304774067999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~i 474 (806)
.+-|-|..|||||.-+++|
T Consensus 32 ~v~liGpNGaGKSTLlk~i 50 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAI 50 (263)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999989998499999999
No 494
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=42.50 E-value=13 Score=15.05 Aligned_cols=44 Identities=25% Similarity=0.439 Sum_probs=0.0
Q ss_pred CCCCHHHCCCCCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 21000210456666667854100202355304774067999999
Q gi|254780799|r 431 QCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 431 ~~~L~iaLGKdI~G~pvv~DLakMPHLLIAGtTGSGKSV~iN~i 474 (806)
+..++++.|-.+-=+-+-.++.+==++.+-|..|||||.-++.|
T Consensus 438 ~~~~slsyg~~~lL~~vsl~l~~Ge~~gLvG~NGsGKSTLlr~L 481 (986)
T 2iw3_A 438 NCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAI 481 (986)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHH
T ss_pred EEEEEEEECCEEEEECCEEEECCCCEEEEECCCCCHHHHHHHHH
T ss_conf 85799870997898677899868979999999998199999999
No 495
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class member, structural genomics; 2.20A {Eubacterium ventriosum atcc 27560}
Probab=42.48 E-value=8.3 Score=16.56 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=0.0
Q ss_pred CCCE--EEEEECCCCHHH
Q ss_conf 0202--355304774067
Q gi|254780799|r 453 RMPH--LLIAGTTGSGKS 468 (806)
Q Consensus 453 kMPH--LLIAGtTGSGKS 468 (806)
.|=+ ..|.|..|||||
T Consensus 3 ~mk~~iI~I~g~~GsGKs 20 (201)
T 3fdi_A 3 AMKQIIIAIGREFGSGGH 20 (201)
T ss_dssp ---CCEEEEEECTTSSHH
T ss_pred CCCCEEEEECCCCCCCHH
T ss_conf 887458986699999869
No 496
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.00A {Aquifex aeolicus VF5}
Probab=42.40 E-value=13 Score=15.04 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=0.0
Q ss_pred CCEEEEEECCCCHHHHHHHHH
Q ss_conf 202355304774067999999
Q gi|254780799|r 454 MPHLLIAGTTGSGKSVAINTM 474 (806)
Q Consensus 454 MPHLLIAGtTGSGKSV~iN~i 474 (806)
|==+-|.|..|||||-..+-+
T Consensus 1 M~kIgItG~iGSGKSTv~~~l 21 (204)
T 2if2_A 1 MKRIGLTGNIGCGKSTVAQMF 21 (204)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
T ss_conf 949999799977799999999
No 497
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=42.35 E-value=13 Score=15.03 Aligned_cols=68 Identities=22% Similarity=0.295 Sum_probs=0.0
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 2355304774067999999999998299578478885231001110277034312233430456689999999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEME 531 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI~SlLyk~~P~evkliliDPK~vEls~Y~~iPHLl~pVvTd~~kA~~aL~w~V~EMe 531 (806)
|||+-|-.|+|||..--+|--.| .|..++..+.-+.-.. +..||-.+=+=..|.+.+.+++-.....+
T Consensus 62 ~llL~GpPGtGKT~lAr~ia~~L----p~~~~~~~l~g~~~~~----~~~~~~rt~~~~~~~~iv~~~~~~~~~~~ 129 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELL----PTETLEDILVFPNPED----ENMPRIKTVPACQGRRIVEKYREKAKSQE 129 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTS----CCSSCEEEEEECCTTC----TTSCEEEEEETTHHHHHHHHHHHHHHHHT
T ss_pred CEEEECCCCCHHHHHHHHHHHHC----CCCCHHHHHCCCCCCC----CCCCCCCEECCCCCCHHHHHHHHHHCCCC
T ss_conf 68998999811999999999736----9814566622477633----34674213023454137898876300111
No 498
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=42.27 E-value=13 Score=15.02 Aligned_cols=19 Identities=37% Similarity=0.798 Sum_probs=0.0
Q ss_pred EEEEECCCCHHHHHHHHHH
Q ss_conf 3553047740679999999
Q gi|254780799|r 457 LLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 457 LLIAGtTGSGKSV~iN~iI 475 (806)
++|-|..|+|||-.||.++
T Consensus 28 I~vlG~~~vGKTSLi~rl~ 46 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999957928999999998
No 499
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=42.19 E-value=12 Score=15.42 Aligned_cols=15 Identities=20% Similarity=0.342 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 898899999999971
Q gi|254780799|r 697 VSDIEVEKVVSHLKT 711 (806)
Q Consensus 697 v~~~ev~~v~~~~~~ 711 (806)
.||+||..||+|+++
T Consensus 68 Lsd~ei~~vv~Yl~~ 82 (83)
T 1cc5_A 68 CSDDELKAAIGKMSG 82 (83)
T ss_dssp CCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 999999999999862
No 500
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=42.10 E-value=13 Score=15.00 Aligned_cols=20 Identities=30% Similarity=0.597 Sum_probs=0.0
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 23553047740679999999
Q gi|254780799|r 456 HLLIAGTTGSGKSVAINTMI 475 (806)
Q Consensus 456 HLLIAGtTGSGKSV~iN~iI 475 (806)
++++-|.-|+|||--+|.++
T Consensus 9 ki~lvG~~~vGKSsLi~~l~ 28 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQ 28 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89999999989899999997
Done!