HHSEARCH alignment of GI: 254780799 and SCOP domain: d1tf7a1

Alignment

Probab=90.88  E-value=0.17  Score=27.51  Aligned_cols=45  Identities=20%  Similarity=0.279  Sum_probs=35.0

Q ss_pred             EEEHHHHHHHHHHCCCH--HHHHHHHHHHHHHHCCEEEEEEECCCCC
Q ss_conf             77634468888732100--5889999998664142379999657775
Q gi|254780799|r  593 VVVIDEMADLMMVARKD--IESAVQRLAQMARASGIHVIMATQRPSV  637 (806)
Q Consensus       593 vviiDElaDlmm~~~~~--ve~~i~rlaq~ara~GiHli~aTqrPsv  637 (806)
                      ++|||-+.+++....++  .-....++.+.++..|+..++..|.+..
T Consensus       128 ~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (242)
T d1tf7a1         128 RVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEE  174 (242)
T ss_dssp             EEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             20020788998760572678999999999998639716884210255

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]