HHSEARCH alignment of GI: 254780799 and SCOP domain: d1tf7a2

Alignment
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=94.37  E-value=0.16  Score=27.71  Aligned_cols=47  Identities=13%  Similarity=0.136  Sum_probs=36.6

Q ss_pred             CEEEEEHHHHHHHHHHC-CCHHHHHHHHHHHHHHHCCEEEEEEECCCC
Q ss_conf             86877634468888732-100588999999866414237999965777
Q gi|254780799|r  590 PYIVVVIDEMADLMMVA-RKDIESAVQRLAQMARASGIHVIMATQRPS  636 (806)
Q Consensus       590 p~ivviiDElaDlmm~~-~~~ve~~i~rlaq~ara~GiHli~aTqrPs  636 (806)
                      ..-++|||-+..+.... ..++...+..|-.+++..|++.++..|...
T Consensus       116 ~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~  163 (242)
T d1tf7a2         116 KPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQ  163 (242)
T ss_dssp             CCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSS
T ss_pred             CCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE
T ss_conf             885332204314304899999999999999999986983999985675


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]