RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62] (806 letters) >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* (A:136-512) Length = 377 Score = 230 bits (586), Expect = 6e-61 Identities = 190/382 (49%), Positives = 238/382 (62%), Gaps = 8/382 (2%) Query: 424 SRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMT 483 + F N L + LGK I G+P++ADLA+MPHLL+AGTTGSG SV +N MILS+LY+ Sbjct: 2 NAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ 61 Query: 484 PAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVR 543 P R IMIDPKMLELSVY+GIP+LLT VVT+ + A L+W V EME RY+ MS +GVR Sbjct: 62 PEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVR 121 Query: 544 NIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLM 603 N+ G+N K+A+ + D + + PYIVV++DE ADLM Sbjct: 122 NLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPV------LKKEPYIVVLVDEFADLM 175 Query: 604 MVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSR 663 M K +E + RLAQ ARA+GIH+++ATQRPSVDVITG IKAN PTRI+F VSSKIDSR Sbjct: 176 MTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSR 235 Query: 664 TILGEQGAEQLLGQGDMLYM-TGGGRVQRIHGPFVSDIEVEKVVSHLKTQGEAKYID-IK 721 TIL + GAE LLG GDMLY R+HG FV D EV VV K +G +Y+D I Sbjct: 236 TILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGIT 295 Query: 722 DKILLNEEMRFSENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEE 781 + + D L+ QAV V KASIS +QR+ IGYNRAA IIE ME Sbjct: 296 SDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEA 355 Query: 782 KGVIGPASSTGKREILISSMEE 803 +G++ G RE+L + Sbjct: 356 QGIVSEQGHNGNREVLAPPPFD 377 >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA ATG; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* (A:183-574) Length = 392 Score = 209 bits (533), Expect = 9e-55 Identities = 193/380 (50%), Positives = 247/380 (65%), Gaps = 16/380 (4%) Query: 433 DLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMI 492 + + LG I G+PII DLA+MPHLL+AGTTGSGKSV +N M+LS+L++ TP++ RLIMI Sbjct: 11 TVPLALGHDIGGRPIITDLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMI 70 Query: 493 DPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKV 552 DPKMLELS+Y+GIP+LL PVVT+ ++A L+W V EME RY+ M+ +GVRN+ GFN KV Sbjct: 71 DPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEMERRYRLMAAMGVRNLAGFNRKV 130 Query: 553 AQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIES 612 G + + E +P IVVV+DE AD+MM+ K +E Sbjct: 131 KDAEEAGTPLTDPLFRRESP-------DDEPPQLSTLPTIVVVVDEFADMMMIVGKKVEE 183 Query: 613 AVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQGAE 672 + R+AQ ARA+GIH+I+ATQRPSVDVITG IKAN PTRI+FQVSSKIDSRTIL + GAE Sbjct: 184 LIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQGGAE 243 Query: 673 QLLGQGDMLYM-TGGGRVQRIHGPFVSDIEVEKVVSHLKTQGEAKYIDIKDKILLNEEM- 730 QLLG GDMLY+ G G R+HG FVSD EV +VV K +G YI+ + Sbjct: 244 QLLGHGDMLYLPPGTGLPIRVHGAFVSDDEVHRVVEAWKLRGAPDYIEDILAGVDEGGGG 303 Query: 731 -------RFSENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKG 783 S S D LY +AV V +ASIS +QR+L IGYNRAA +IE ME G Sbjct: 304 GGSFDGGDGSGEGSEDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAG 363 Query: 784 VIGPASSTGKREILISSMEE 803 V+ P ++ G RE++ + Sbjct: 364 VVTPMNTNGSREVIAPAPVR 383 >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA ATG; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* (A:1-182) Length = 182 Score = 143 bits (363), Expect = 6e-35 Identities = 47/128 (36%), Positives = 78/128 (60%), Gaps = 3/128 (2%) Query: 296 QSNLINHGTGTFVLPSKEILSTSQSPVNQMTFSPKVMQNNACTLKSVLSDFGIQGEIVNV 355 Q+ L LP +L + V Q ++SP+ ++ + L+ L +FG++ + +V Sbjct: 57 QAPLFVDTAVEGTLPPLSLLD--PAEVKQKSYSPESLEAMSRLLEIKLKEFGVEVSVDSV 114 Query: 356 RPGPVITLYELEPAPGIKSSRIIGLSDDIARSMSAISARV-AVIPRRNAIGIELPNDIRE 414 PGPVIT +E++PA G+K SRI L+ D+ARS++ IS RV VIP + +GIE+PN+ R+ Sbjct: 115 HPGPVITRFEIQPAAGVKVSRISNLAKDLARSLAVISVRVVEVIPGKTTVGIEIPNEDRQ 174 Query: 415 TVMLRDLI 422 V +++ Sbjct: 175 MVRFSEVL 182 >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* (A:1-135) Length = 135 Score = 141 bits (358), Expect = 3e-34 Identities = 49/119 (41%), Positives = 76/119 (63%), Gaps = 3/119 (2%) Query: 305 GTFVLPSKEILSTSQSPVNQMTFSPKVMQNNACTLKSVLSDFGIQGEIVNVRPGPVITLY 364 T LPS ++L+ P ++ A +++ L+DF I+ ++VN PGPVIT + Sbjct: 19 PTTPLPSLDLLT--PPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRF 76 Query: 365 ELEPAPGIKSSRIIGLSDDIARSMSAISARV-AVIPRRNAIGIELPNDIRETVMLRDLI 422 EL APG+K++RI LS D+ARS+S ++ RV VIP + +G+ELPN R+TV LR+++ Sbjct: 77 ELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVL 135 >2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} (A:) Length = 73 Score = 104 bits (262), Expect = 4e-23 Identities = 32/71 (45%), Positives = 43/71 (60%) Query: 733 SENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTG 792 S S D LY +AV V +ASIS +QR+L IGYNRAA +IE ME GV+ P ++ G Sbjct: 2 SGEGSEDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNG 61 Query: 793 KREILISSMEE 803 RE++ + Sbjct: 62 SREVIAPAPVR 72 >1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} (A:24-137,A:224-347,A:402-437) Length = 274 Score = 104 bits (261), Expect = 4e-23 Identities = 40/254 (15%), Positives = 80/254 (31%), Gaps = 31/254 (12%) Query: 426 VFEKNQCDLAINLGKSI-EGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTP 484 V + K + + A HLL+ G TG+GKSV + + + L R Sbjct: 1 VSGGKLKRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELAYTGLLRGDR 60 Query: 485 AQCRLIMIDPKMLELS-VYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVR 543 ++++DP LS +L P Q+ + + +Q+ + V Sbjct: 61 ----MVIVDPNGDMLSKFGRDKDIILNPY---DQRTKGWSFFNEIRNDYDWQRYALSVVP 113 Query: 544 NIDGFNLKVAQYHNTGKKFNRTVQTGFDRKT----------GEAIYETEHFDFQHMPYIV 593 + + + + N + D + + Sbjct: 114 RMPDGDFSIRSWLEDPNGGNLFITWREDMGPALRPLISAWVDVVCTSILSLPEEPKRRLW 173 Query: 594 VVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS------VDVITGTIKAN 647 + IDE+A L +++ R +G+ V+ Q S T++A+ Sbjct: 174 LFIDELASLEK------LASLADALTKGRKAGLRVVAGLQSTSQLDDVYGVKEAQTLRAS 227 Query: 648 FPTRISFQVSSKID 661 F + + S + Sbjct: 228 FRSLVVLGGSRDLT 241 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 40.1 bits (93), Expect = 0.001 Identities = 28/190 (14%), Positives = 63/190 (33%), Gaps = 37/190 (19%) Query: 440 KSIEGKPIIADLARMPHLLIA-GTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLE 498 K++ P++ L+ P +I +G+GK+ A +LS + P + + + L Sbjct: 148 KAL---PLL--LSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELA 202 Query: 499 LSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNT 558 + D + + T +K + + KI + + G V Sbjct: 203 RQIMDVVTEMGKY---------TEVKTAFGIKDSVPKGA-KIDAQIVIGTPGTVMDLMKR 252 Query: 559 GKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIE----SA- 613 + R ++ EA + D+ + + ++ + SA Sbjct: 253 RQLDARDIKVFVLD---EADNMLDQQGL---------GDQSMRIKHLLPRNTQIVLFSAT 300 Query: 614 ----VQRLAQ 619 V++ A+ Sbjct: 301 FSERVEKYAE 310 >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} (A:147-418) Length = 272 Score = 33.9 bits (76), Expect = 0.083 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Query: 437 NLGKSIEGKPIIADLARMPH--LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494 +LG + L + PH +L+ G TGSGKS T + + L + ++ ++ ++ Sbjct: 2 SLGXTAHNHDNFRRLIKRPHGIILVTGPTGSGKS----TTLYAGLQELNSSERNILTVED 57 Query: 495 KMLEL 499 + Sbjct: 58 PIEFD 62 >3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis} (A:1-214) Length = 214 Score = 32.1 bits (72), Expect = 0.30 Identities = 5/38 (13%), Positives = 15/38 (39%) Query: 607 RKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTI 644 + ++ + + + VI++ P D I ++ Sbjct: 4 KVIAQAHIDHFTKWFERADKIVIVSHVSPDGDAIGSSL 41 >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein transport; HET: ADP; 2.80A {Aquifex aeolicus VF5} PDB: 2eww_A* 2gsz_A* (A:125-372) Length = 248 Score = 31.6 bits (70), Expect = 0.35 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 9/125 (7%) Query: 446 PIIADLARMPH--LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYD 503 + +L +L+ G TGSGKS T I S++ + + I+ +E Sbjct: 2 DKVLELCHRKMGLILVTGPTGSGKS----TTIASMIDYINQTKSYHIITIEDPIEYVFKH 57 Query: 504 GIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFN 563 + V K+ + + ++ R+++ + TG Sbjct: 58 KKSIVNQREVGEDTKSFADALRAALREDPDVIFVGEM--RDLETVET-ALRAAETGHLVF 114 Query: 564 RTVQT 568 T+ T Sbjct: 115 GTLHT 119 >1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} (A:1-88,A:234-291) Length = 146 Score = 31.2 bits (71), Expect = 0.46 Identities = 6/19 (31%), Positives = 11/19 (57%) Query: 614 VQRLAQMARASGIHVIMAT 632 Q + + R +GI+V+ T Sbjct: 62 AQFMLDVMRETGINVVACT 80 >2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} (A:1-77) Length = 77 Score = 31.3 bits (71), Expect = 0.47 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 727 NEEMRFSENSSVA-DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785 + + + V D++ K+ + I+ D KA + I + G+ + I + E GVI Sbjct: 12 SGLVPRGSHMRVPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVI 71 >2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} (A:1-55) Length = 55 Score = 31.1 bits (71), Expect = 0.51 Identities = 7/46 (15%), Positives = 25/46 (54%) Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785 D+L + ++ ++ + + + + + ++ G+ +E M++ G+I Sbjct: 4 DNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGII 49 >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} (A:1-102,A:185-277) Length = 195 Score = 31.3 bits (70), Expect = 0.52 Identities = 8/43 (18%), Positives = 13/43 (30%) Query: 452 ARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494 L+ GSGK+ I I L+ + + Sbjct: 13 FVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTF 55 >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} (A:1-107,A:194-286) Length = 200 Score = 30.9 bits (69), Expect = 0.55 Identities = 11/39 (28%), Positives = 16/39 (41%) Query: 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494 LLI GSGK+ + I L+ A ++ I Sbjct: 26 PLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITF 64 >2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3} (A:1-58) Length = 58 Score = 30.7 bits (70), Expect = 0.65 Identities = 10/46 (21%), Positives = 22/46 (47%) Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785 D + Q V I+ +++ + + L R A I+ +++ G+I Sbjct: 8 DRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGII 53 >2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A (A:1-60) Length = 60 Score = 30.7 bits (70), Expect = 0.66 Identities = 4/46 (8%), Positives = 21/46 (45%) Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785 D + + ++ + + + + R+ + + ++ +E+ G++ Sbjct: 9 DKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIV 54 >2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A (A:1-56) Length = 56 Score = 30.7 bits (70), Expect = 0.67 Identities = 12/46 (26%), Positives = 25/46 (54%) Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785 DD+ + V + D +A++S + R G+ + S + +E +GV+ Sbjct: 6 DDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVV 51 >2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* (A:1-53) Length = 53 Score = 30.7 bits (70), Expect = 0.69 Identities = 12/46 (26%), Positives = 24/46 (52%) Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785 D++ + + I+ + K S+ I R + I + I+ +E+ GVI Sbjct: 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVI 47 >2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} (A:1-55) Length = 55 Score = 30.7 bits (70), Expect = 0.70 Identities = 7/46 (15%), Positives = 22/46 (47%) Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785 D + ++ + +D++ S+ + R++ + + +E G+I Sbjct: 4 DQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGII 49 >1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} (A:1-54) Length = 54 Score = 30.7 bits (70), Expect = 0.78 Identities = 13/46 (28%), Positives = 26/46 (56%) Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785 D+ K ++I+ +D + + I ++LGI ++ +EEKG+I Sbjct: 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGII 48 >2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} (A:1-57) Length = 57 Score = 30.7 bits (70), Expect = 0.78 Identities = 13/46 (28%), Positives = 23/46 (50%) Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785 D++ K+ + I+ D KA + I + G+ + I + E GVI Sbjct: 6 DEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVI 51 >2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} (A:1-66) Length = 66 Score = 30.4 bits (69), Expect = 0.81 Identities = 12/46 (26%), Positives = 26/46 (56%) Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785 DDL + + ++ +D + +IS + +L + I+ ++E+GVI Sbjct: 16 DDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVI 61 >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} (A:1-145,A:303-387) Length = 230 Score = 30.1 bits (67), Expect = 1.0 Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 3/46 (6%) Query: 451 LARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKM 496 L + ++ G+GK+ + +L + R +++ P Sbjct: 5 LKKGMTTVLDFHPGAGKTRRF---LPQILAECARRRLRTLVLAPTR 47 >3enu_A Nitrollin, putative uncharacterized protein; betagamma crystallin, structural protein; 1.86A {Nitrosospira multiformis} PDB: 3ent_A (A:) Length = 114 Score = 30.0 bits (67), Expect = 1.1 Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 677 QGDMLYMTGGGRVQRIHGPFVSDIE 701 QGD L+++G + R+ GPF D E Sbjct: 34 QGDSLFLSGPATLPRLIGPFGYDWE 58 >2vbc_A Dengue 4 NS3 FULL-length protein; transmembrane, RNA replication, NS2B-NS3 protease; 3.15A {Dengue virus type 4} (A:176-323,A:482-562) Length = 229 Score = 29.7 bits (66), Expect = 1.2 Identities = 6/50 (12%), Positives = 13/50 (26%) Query: 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKM 496 + ++ G+GK+ I I+ + L Sbjct: 4 DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVA 53 >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} (A:93-277) Length = 185 Score = 29.6 bits (65), Expect = 1.4 Identities = 18/168 (10%), Positives = 39/168 (23%), Gaps = 11/168 (6%) Query: 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK-----MLELSVYDGIPNLLTP 511 + G GSGK+ + L + + L G+P L Sbjct: 9 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVM 68 Query: 512 VVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFD 571 +P+ ++ + G ID + + + Sbjct: 69 DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA------RLKEVLGPDEV 122 Query: 572 RKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQ 619 +A+ E V + + + +A+ Sbjct: 123 LLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHV 170 >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} (A:) Length = 174 Score = 29.5 bits (65), Expect = 1.8 Identities = 19/162 (11%), Positives = 47/162 (29%), Gaps = 4/162 (2%) Query: 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPV 512 +P L A +G+GK+ T++ L+ + R +I ++ V + Sbjct: 5 MIPLLAFAAWSGTGKT----TLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELR 60 Query: 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDR 572 + + + M E + + + + Sbjct: 61 KAGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLF 120 Query: 573 KTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAV 614 + G E +H+ + + D+ ++ D+E Sbjct: 121 RDGAGHRPEELVIDRHVIAVASDVPLNLDVALLDINDVEGLA 162 >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} (A:170-361) Length = 192 Score = 29.3 bits (64), Expect = 1.8 Identities = 16/163 (9%), Positives = 36/163 (22%), Gaps = 32/163 (19%) Query: 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVT 514 LI TG+GK+V + L L Sbjct: 30 KRSLITXATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFL----------------- 72 Query: 515 NPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKT 574 LV + +++ + + K + Sbjct: 73 ------ADRNVLVDDPKDKTFTPFG---------DARHKIEGGKVVKSREIYFAIYQSIA 117 Query: 575 GEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRL 617 + + +F + +++IDE + ++ Sbjct: 118 SDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYF 160 >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A (C:) Length = 267 Score = 29.4 bits (65), Expect = 1.8 Identities = 40/211 (18%), Positives = 67/211 (31%), Gaps = 19/211 (9%) Query: 437 NLGKSIEGKPIIAD----LARMPHLLIAGTTGSGKSVAINTMILSLLYRMT--PAQCRLI 490 +L S+E K I+ + I G GSGKS T+ Y +T + + Sbjct: 25 DLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGK 84 Query: 491 MIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNI-DGFN 549 + E +GI V P + Y+ + + D Sbjct: 85 DLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLME 144 Query: 550 LKVAQYHNTGKKFNRTVQTGFD--RKTGEAIYETEHFDFQHMPYIVVVIDE-MADLMMVA 606 K+A R+V GF K I + + + + ++DE + L + A Sbjct: 145 EKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPE-----LCILDESDSGLDIDA 199 Query: 607 RKDIESAVQRLAQMARASGIHVIMATQRPSV 637 K + V L R I+ T + Sbjct: 200 LKVVADGVNSL----RDGKRSFIIVTHYQRI 226 >2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Length = 98 Score = 29.4 bits (66), Expect = 1.9 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 4/50 (8%) Query: 734 ENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKG 783 +A K + N+ S ++ IG +A I+ E G Sbjct: 19 SPELLAHGRQKILDLL----NEGSARDLRSLQRIGPKKAQLIVGWRELHG 64 >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} (B:) Length = 263 Score = 28.9 bits (63), Expect = 2.3 Identities = 18/189 (9%), Positives = 51/189 (26%), Gaps = 9/189 (4%) Query: 453 RMPHLLIAGTTGSGKSVAINTMI-------LSLLYRMTPAQCRLIMIDPKMLELSVYDGI 505 R+ + I G +GKS +N + + + + + L +S +G Sbjct: 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGG 82 Query: 506 PNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRT 565 L + + T + +++ + L + + + + Sbjct: 83 NVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFAS 142 Query: 566 VQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASG 625 + + D+ D ++ + E+ + R+ R Sbjct: 143 NLYESECMNETEWT--IYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEE 200 Query: 626 IHVIMATQR 634 + + Sbjct: 201 QGIPLEYLE 209 >2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein, X-RAY crystallography; HET: PA6 PQE; 2.20A {Haemophilus influenzae 86-028np} (A:) Length = 196 Score = 28.9 bits (64), Expect = 2.3 Identities = 18/169 (10%), Positives = 43/169 (25%), Gaps = 12/169 (7%) Query: 18 LSDWSKKKMKIVAGLILLCT-VFAITLALGTWDVYDPSFSYITLRSPKNFLGYGGAIFAD 76 + ++ ++ KI L LC ++ D+ Y Sbjct: 1 MENFLAQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVH 60 Query: 77 VAIQFFGIASVFFLPPPTMWALSLLFDKKIYCFSKRATAWLINILVSATFFASFSPSQSW 136 + F + + F L + + T + S Sbjct: 61 -----LSNLHILF----NLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQN--YVSG 109 Query: 137 PIQNGFGGIIGDLIIRLPFLFFESYPRKLGILFFQMILFLAMSWLLIYS 185 P G G++ ++ + ++ F +L + ++ I Sbjct: 110 PAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISP 158 >3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} (A:288-342,A:490-655) Length = 221 Score = 29.0 bits (64), Expect = 2.4 Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 4/30 (13%) Query: 603 MMVARKDIESAVQRLAQMARASGIHVIMAT 632 + V R D ++R G++V M T Sbjct: 52 LSVDRHDSAETIRRA----LNLGVNVKMIT 77 >3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, PSI-2, protein structure initiative; 2.35A {Thermoplasma acidophilum} (A:) Length = 182 Score = 29.1 bits (64), Expect = 2.4 Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 5/48 (10%) Query: 593 VVVIDEMADLM-----MVARKDIESAVQRLAQMARASGIHVIMATQRP 635 +VV+D + + + +++ + R SG+ V+ Sbjct: 5 LVVVDXVNEFIHGRLATPEAXKTVGPARKVIETFRRSGLPVVYVNDSH 52 >3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, transcription-coupled DNA repair, ATP-binding, DNA damage, DNA repair; 1.95A {Escherichia coli} PDB: 2b2n_A* (A:1-115,A:266-483) Length = 333 Score = 28.9 bits (63), Expect = 2.6 Identities = 3/35 (8%), Positives = 9/35 (25%) Query: 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYR 481 + L+ TG+ + + + Sbjct: 7 YTLPVKAGEQRLLGELTGAACATLVAEIAERHAGP 41 >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombination, hydrolase; 2.90A {Pyrococcus furiosus dsm 3638} (A:1-196) Length = 196 Score = 28.8 bits (63), Expect = 2.7 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Query: 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKM 496 +I + + LI TG GK++ ++ YR+T +++M+ P Sbjct: 16 VIYAKCKETNCLIVLPTGLGKTLIA---MMIAEYRLTKYGGKVLMLAPTK 62 >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* (A:) Length = 226 Score = 28.6 bits (62), Expect = 2.8 Identities = 23/217 (10%), Positives = 58/217 (26%), Gaps = 10/217 (4%) Query: 433 DLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMI 492 D+ + + + + + G GSGK++ I +I +L + A +I Sbjct: 17 DILKANKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76 Query: 493 DPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKV 552 E G + ++ + ++ + I Sbjct: 77 AKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNLDEIDLLFIE----------N 126 Query: 553 AQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIES 612 F+ + +T M +++ DL DI+ Sbjct: 127 VGNLICPADFDLGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVGADIKK 186 Query: 613 AVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFP 649 ++ + + ++ D + I+ + Sbjct: 187 MENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A (A:1-140,A:295-379) Length = 225 Score = 28.5 bits (63), Expect = 3.1 Identities = 6/42 (14%), Positives = 18/42 (42%), Gaps = 3/42 (7%) Query: 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML 497 ++ G+GK+ + + L+ + R +++ P + Sbjct: 4 LTVLDLHPGAGKTRRV---LPQLVREAVKKRLRTVILAPTRV 42 >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} (B:1-293) Length = 293 Score = 28.5 bits (62), Expect = 3.2 Identities = 25/195 (12%), Positives = 51/195 (26%), Gaps = 17/195 (8%) Query: 447 IIADLARMPHLLIAGTTGSGKSVAINTMIL-SLLYR----MTPAQCRLIMIDPKMLELSV 501 + +D +P +++ G+ SGKS + ++ L R +T L + + + Sbjct: 17 LGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGS 76 Query: 502 YDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGF----NLKVAQYHN 557 + + ++ + +R +K V Sbjct: 77 QTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLV 136 Query: 558 TGKKFNRTVQTGFDRKTGEAIYETEHFDFQH-MPYIVVVIDEMADLMMVARKDIESAVQR 616 + + I + IV V DL S + Sbjct: 137 DLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL-------ANSDALQ 189 Query: 617 LAQMARASGIHVIMA 631 LA+ G I Sbjct: 190 LAKEVDPEGKRTIGV 204 >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} (A:324-582) Length = 259 Score = 28.4 bits (62), Expect = 3.2 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%) Query: 459 IAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML 497 + G +GSGKS N + + Y + L D + Sbjct: 51 LVGRSGSGKSTIAN--LFTRFYDVDSGSICLDGHDVRDY 87 >3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str} (A:1-53) Length = 53 Score = 28.3 bits (64), Expect = 3.4 Identities = 11/46 (23%), Positives = 25/46 (54%) Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785 D L ++ + I+ D+ +++ + +++G+ I+ EE GVI Sbjct: 2 DRLDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKXEEDGVI 47 >2j28_9 Signal recognition particle 54; ribosome, protein/RNA complex; 8.0A {Escherichia coli} (9:92-330) Length = 239 Score = 28.5 bits (62), Expect = 3.7 Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 1/86 (1%) Query: 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIP 506 + +L+AG G+GK+ ++ + L + + ++ D Sbjct: 1 LNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKH-KKKVLVVSADVYRPAAIKQLETL 59 Query: 507 NLLTPVVTNPQKAVTVLKWLVCEMEE 532 V P +V + Sbjct: 60 AEQVGVDFFPSDVGQKPVDIVNAALK 85 >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* (A:165-385) Length = 221 Score = 28.3 bits (61), Expect = 3.8 Identities = 2/45 (4%), Positives = 14/45 (31%) Query: 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIM 491 ++ ++ + + GK+ + + + ++ Sbjct: 7 MLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILA 51 >3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 2zzy_A (A:) Length = 186 Score = 28.2 bits (61), Expect = 3.8 Identities = 21/181 (11%), Positives = 44/181 (24%), Gaps = 19/181 (10%) Query: 459 IAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQK 518 I+G +G+GKS + + + P+ E V Sbjct: 6 ISGPSGTGKSTLLK-KLFAEYPDSFGFSVSSTTRTPRAGE-------------VNGKDYN 51 Query: 519 AVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAI 578 V+V ++ + + ++ V Q +GK + + Sbjct: 52 FVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIP 111 Query: 579 YETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVD 638 F F P + + + + I + + V Sbjct: 112 ELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQA-----ELAYAETGAHDKVI 166 Query: 639 V 639 V Sbjct: 167 V 167 >1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} (D:135-193) Length = 59 Score = 28.1 bits (62), Expect = 3.8 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 7/23 (30%) Query: 492 IDPKMLELSVYDGIP----NLLT 510 +DPK +V DG+P LLT Sbjct: 1 LDPKG---AVLDGVPVEKRQLLT 20 >3b44_A GLPG; intramembrane protease, integral membrane protein, serine protease, DNA-binding, glycerol metabolism, inner membrane, transmembrane; HET: BNG; 1.70A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 3b45_A* 2irv_A* 2o7l_A* (A:) Length = 180 Score = 28.0 bits (62), Expect = 4.1 Identities = 20/166 (12%), Positives = 43/166 (25%), Gaps = 15/166 (9%) Query: 28 IVAGLILLCT-VFAITLALGTWDVYDPSFSYITLRSPKNFLGYGGAIFADVAIQFFGIAS 86 + +++ C VF LG +V F Y F + Sbjct: 6 VTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFARYFTHALM-----HFSLMH 60 Query: 87 VFFLPPPTMWALSLLFDKKIYCFSKRATAWLINILVSATFFASFSPSQSWPIQNGFGGII 146 + F + L + I + + S W G G++ Sbjct: 61 ILF----NLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFG--GLSGVV 114 Query: 147 GDLIIRLPFLFFESYPRKLGILFFQMILFLAMSWLLIYSSSAIFQG 192 L+ +++ ++ Q L + ++ +F Sbjct: 115 YALMG---YVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGM 157 >1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus} (U:48-134) Length = 87 Score = 28.1 bits (63), Expect = 4.3 Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 4/34 (11%) Query: 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIEN 778 + +D+ N +I+ + G+ A I++N Sbjct: 6 EKIDL----NNTNIAAFIQYRGLYPTLAKLIVKN 35 >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} (A:) Length = 240 Score = 28.0 bits (62), Expect = 4.4 Identities = 26/177 (14%), Positives = 55/177 (31%), Gaps = 16/177 (9%) Query: 459 IAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQK 518 + G G+GK+ ++ ++ L R + D V + L P Sbjct: 37 LIGANGAGKTTTLS--AIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRRIFP 94 Query: 519 AVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAI 578 +TV + L R K R+++ + K+ T+ G + Sbjct: 95 ELTVYENLXXGAYNRKDKEGIK--RDLEWIFSLFPRLKERLKQLGGTLSGGEQQXLAIGR 152 Query: 579 YETEHFDFQHMPYIVVVIDE-MADLMMVARKDIESAVQRLAQMARASGIHVIMATQR 634 ++ DE L + ++ +Q++ Q G +++ Q Sbjct: 153 ALXSRPK-------LLXXDEPSLGLAPILVSEVFEVIQKINQ----EGTTILLVEQN 198 >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} (F:92-284) Length = 193 Score = 28.1 bits (61), Expect = 4.5 Identities = 16/171 (9%), Positives = 42/171 (24%), Gaps = 15/171 (8%) Query: 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLE------LSVYDGIPNLLT 510 +++ G G+GK+ T L Y ++ ++ + L + Sbjct: 10 IMLVGVQGTGKT----TTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPV 65 Query: 511 PVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFN-----RT 565 + V + K V + ++ + G+ + A + Sbjct: 66 YGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEV 125 Query: 566 VQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQR 616 +A F+ +++ +A Sbjct: 126 TLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVAATGA 176 >2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A (A:1-121) Length = 121 Score = 27.6 bits (61), Expect = 5.4 Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Query: 750 VLRDNKASISYIQRRLGIGYNRAASIIENMEEKG-VIGPASSTGKREILIS 799 D +++Y+ R + + + ++ +EE G V+ +R+ILI Sbjct: 45 ATSDGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIE 95 >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} (A:93-282) Length = 190 Score = 27.8 bits (60), Expect = 5.5 Identities = 25/167 (14%), Positives = 47/167 (28%), Gaps = 9/167 (5%) Query: 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK-------MLELSVYDGIPNLL 509 + G GSGK+ L+L Y+ + L+ D + + L G+P L Sbjct: 9 WFLVGLQGSGKTTTAAK--LALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 66 Query: 510 TPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTG 569 +P+ ++ + G ID + + + Sbjct: 67 VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVL 126 Query: 570 FDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQR 616 EA+ FD + +V+ D A + Sbjct: 127 DAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGK 173 >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus dsm 4304} PDB: 2oaq_1 (1:261-446) Length = 186 Score = 27.5 bits (60), Expect = 5.5 Identities = 6/17 (35%), Positives = 11/17 (64%) Query: 458 LIAGTTGSGKSVAINTM 474 ++ G T SGK+ +N + Sbjct: 4 IVVGETASGKTTTLNAI 20 >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} (A:) Length = 203 Score = 27.7 bits (60), Expect = 5.8 Identities = 20/200 (10%), Positives = 57/200 (28%), Gaps = 10/200 (5%) Query: 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPV 512 ++ + + G G+GK T L+ + + + + + Sbjct: 14 QVSVIFVLGGPGAGKG----TQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCI 69 Query: 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDR 572 + L+ K +K IDGF K+ Q + + + F Sbjct: 70 KEGQIVPQEITLALLRNAISDNVKANKHKFL-IDGFPRKMDQAISFERDIVESKFILFFD 128 Query: 573 KTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMAT 632 + + E + I+ + ++ ++ ++ + + Sbjct: 129 CPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSK---VVRVRCD 185 Query: 633 QRPSVDVITGTIKANFPTRI 652 + SV+ + ++ + Sbjct: 186 R--SVEDVYKDVQDAIRDSL 203 >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} (A:) Length = 247 Score = 27.6 bits (60), Expect = 6.0 Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%) Query: 459 IAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELS 500 I G +GSGKS ++ Y Q + D + + + Sbjct: 40 IVGRSGSGKSTLTK--LIQRFYIPENGQVLIDGHDLALADPN 79 >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.70A {Thermus thermophilus HB8} PDB: 2d2f_A* (A:) Length = 250 Score = 27.4 bits (60), Expect = 6.2 Identities = 33/211 (15%), Positives = 69/211 (32%), Gaps = 23/211 (10%) Query: 437 NLGKSIEGKPIIAD----LARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMI 492 +L SI+G+ I+ + + + G G+GKS IL+ T + +++ Sbjct: 8 DLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGK--ILAGDPEYTVERGEILLD 65 Query: 493 DPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKV 552 +LELS + L P + V + + + ++GV K Sbjct: 66 GENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKA 125 Query: 553 AQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMM----VARK 608 + + + + R E E + I+ ++ + + Sbjct: 126 LELLDWDESY-------LSRYLNEGFSGGE----KKRNEILQLLVLEPTYAVLDETDSGL 174 Query: 609 DIES--AVQRLAQMARASGIHVIMATQRPSV 637 DI++ V R R ++ T + Sbjct: 175 DIDALKVVARGVNAMRGPNFGALVITHYQRI 205 >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure 2 function project, S2F, unknown function; 2.00A {Escherichia coli} (A:1-204) Length = 204 Score = 27.6 bits (60), Expect = 6.9 Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 4/44 (9%) Query: 451 LARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494 + + L+ G G+GK+ T++ +L + +I + Sbjct: 1 MNPIAVTLLTGFLGAGKT----TLLRHILNEQHGYKIAVIENEF 40 >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} (A:1-249) Length = 249 Score = 27.4 bits (61), Expect = 7.0 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 6/51 (11%) Query: 437 NLGKSIEGKPIIAD----LARMPHLLIAGTTGSGKSVAINTMILSLLYRMT 483 +G+ +GK I+ +A+ ++ G G+GK+ +N IL+ T Sbjct: 26 QIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLN--ILNAYEPAT 74 >2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2, protein structure initiative; 1.80A {Escherichia coli K12} (A:1-265) Length = 265 Score = 27.4 bits (59), Expect = 7.1 Identities = 29/236 (12%), Positives = 60/236 (25%), Gaps = 11/236 (4%) Query: 404 IGIELPNDIRETV---MLRDLIVSRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIA 460 I + + L + +++ L + I+ L + Sbjct: 4 INEATLAESIRRLRQGERATLAQAMTLVESRHPRHQALSTQLL-DAIMPYCGNTLRLGVT 62 Query: 461 GTTGSGKSVAINTMILSLLYRMTPAQCRLIM----IDPKMLELSVYDGIPNLLTPVVTNP 516 GT G+GKS + + L+ + + + Sbjct: 63 GTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIR 122 Query: 517 QK-AVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTG 575 + L E G + + V Q + + G Sbjct: 123 PVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGG 182 Query: 576 EAIYETEHFDFQHMPYIVVVIDEMADLMMVA--RKDIESAVQRLAQMARASGIHVI 629 + + + + IV+ D+ + VA R ESA+ L + V+ Sbjct: 183 DDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVL 238 >2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus HB8} (A:) Length = 75 Score = 27.4 bits (61), Expect = 7.1 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 4/45 (8%) Query: 733 SENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIE 777 + + V + N+AS+ + GIG A I+E Sbjct: 5 ALGKVAPLPQAQTPVSL----NEASLEELXALPGIGPVLARRIVE 45 >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} (A:) Length = 198 Score = 27.4 bits (59), Expect = 7.2 Identities = 12/181 (6%), Positives = 40/181 (22%), Gaps = 11/181 (6%) Query: 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNP 516 ++++G +G+GKS +L L++ + + + V Sbjct: 7 VVLSGPSGAGKST-----LLKKLFQEHSSIFGFS-VSHTTRNPRPGEEDGKDYYFVTREM 60 Query: 517 QKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGE 576 + + E + + + R+++ Sbjct: 61 MQRDIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLC---- 116 Query: 577 AIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636 + + K + +A + +++ Sbjct: 117 -PIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLD 175 Query: 637 V 637 Sbjct: 176 K 176 >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein LOLD; structural genomics, NPPSFA; 1.70A {Aquifex aeolicus VF5} PDB: 2pcl_A (A:) Length = 224 Score = 27.2 bits (60), Expect = 7.5 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 6/51 (11%) Query: 437 NLGKSIEGKPIIAD----LARMPHLLIAGTTGSGKSVAINTMILSLLYRMT 483 N+ K I G I+ + + + I G +GSGKS + IL LL T Sbjct: 9 NIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLY--ILGLLDAPT 57 >1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} (A:17-35,A:164-175,A:274-372,A:671-879) Length = 339 Score = 27.4 bits (60), Expect = 7.6 Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 7/114 (6%) Query: 72 AIFADVAIQFFGIASVFFLPPPTMWALSLLFDKKIYCFSKRA--TAWLINILVSATFFAS 129 AIFADVA + + P W L L+ + A T + + + Sbjct: 186 AIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMSVLLGVVLAVGTWITVTTMYAQGENGG 245 Query: 130 FSPSQS-----WPIQNGFGGIIGDLIIRLPFLFFESYPRKLGILFFQMILFLAM 178 + +Q I R F+ S P ++ LA Sbjct: 246 IVQNFGNMDEVLFLQISLTENWLIFITRANGPFWSSIPSWQLSGAIFLVDILAT 299 >3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} (A:) Length = 217 Score = 27.1 bits (59), Expect = 7.6 Identities = 21/165 (12%), Positives = 42/165 (25%), Gaps = 23/165 (13%) Query: 488 RLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDG 547 + ++ Y+ NL T L + + + +R G Sbjct: 42 EITLLMG-------YEITRNLPITTKR----VETPLVEIDAPVIAGKKLAIVPVLRAGVG 90 Query: 548 FNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVAR 607 + + + R G R E I ++ D M A Sbjct: 91 MSDGLLELIP----SARVGHIGVYRADDHRPVEYLVRLPDLEDRIFILCDPMVATGYSAA 146 Query: 608 KDIESAVQRLAQMARASGIHVIMA--------TQRPSVDVITGTI 644 I+ +R R + ++ A P V + ++ Sbjct: 147 HAIDVLKRRGVPGERLMFLALVAAPEGVQVFQDAHPDVKLYVASL 191 >3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} (A:499-568) Length = 70 Score = 27.0 bits (60), Expect = 8.8 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 4/37 (10%) Query: 747 VDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKG 783 VD+ N AS + + R G+ A +I+ + + G Sbjct: 2 VDV----NTASAALLARISGLNSTLAQNIVAHRDANG 34 >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} (A:1-155) Length = 155 Score = 27.1 bits (59), Expect = 9.0 Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 5/109 (4%) Query: 458 LIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQ 517 I G +GK+ + + L Y ID + + +L + V + Sbjct: 16 FITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAP 75 Query: 518 KAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTV 566 + + + + IG+ + F+ ++ + N + V Sbjct: 76 EILNYIMSNSFND-----ETKVIGIDEVQFFDDRICEVANILAENGFVV 119 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.322 0.137 0.398 Gapped Lambda K H 0.267 0.0771 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 5,985,084 Number of extensions: 276439 Number of successful extensions: 1080 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1072 Number of HSP's successfully gapped: 84 Length of query: 806 Length of database: 4,956,049 Length adjustment: 96 Effective length of query: 710 Effective length of database: 1,710,769 Effective search space: 1214645990 Effective search space used: 1214645990 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.0 bits)