RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780799|ref|YP_003065212.1| DNA translocase FtsK
[Candidatus Liberibacter asiaticus str. psy62]
(806 letters)
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome
partition, ATP-binding, DNA- binding, cell division,
transmembrane, inner membrane; HET: DNA; 2.7A
{Escherichia coli} PDB: 2j5p_A* (A:136-512)
Length = 377
Score = 230 bits (586), Expect = 6e-61
Identities = 190/382 (49%), Positives = 238/382 (62%), Gaps = 8/382 (2%)
Query: 424 SRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMT 483
+ F N L + LGK I G+P++ADLA+MPHLL+AGTTGSG SV +N MILS+LY+
Sbjct: 2 NAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ 61
Query: 484 PAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVR 543
P R IMIDPKMLELSVY+GIP+LLT VVT+ + A L+W V EME RY+ MS +GVR
Sbjct: 62 PEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVR 121
Query: 544 NIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLM 603
N+ G+N K+A+ + D + + PYIVV++DE ADLM
Sbjct: 122 NLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPV------LKKEPYIVVLVDEFADLM 175
Query: 604 MVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSR 663
M K +E + RLAQ ARA+GIH+++ATQRPSVDVITG IKAN PTRI+F VSSKIDSR
Sbjct: 176 MTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSR 235
Query: 664 TILGEQGAEQLLGQGDMLYM-TGGGRVQRIHGPFVSDIEVEKVVSHLKTQGEAKYID-IK 721
TIL + GAE LLG GDMLY R+HG FV D EV VV K +G +Y+D I
Sbjct: 236 TILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGIT 295
Query: 722 DKILLNEEMRFSENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEE 781
+ + D L+ QAV V KASIS +QR+ IGYNRAA IIE ME
Sbjct: 296 SDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEA 355
Query: 782 KGVIGPASSTGKREILISSMEE 803
+G++ G RE+L +
Sbjct: 356 QGIVSEQGHNGNREVLAPPPFD 377
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome
partition, ATP-binding, DNA- binding, cell division,
transmembrane, inner membrane; HET: DNA ATG; 2.25A
{Pseudomonas aeruginosa} PDB: 2iuu_A* (A:183-574)
Length = 392
Score = 209 bits (533), Expect = 9e-55
Identities = 193/380 (50%), Positives = 247/380 (65%), Gaps = 16/380 (4%)
Query: 433 DLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMI 492
+ + LG I G+PII DLA+MPHLL+AGTTGSGKSV +N M+LS+L++ TP++ RLIMI
Sbjct: 11 TVPLALGHDIGGRPIITDLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMI 70
Query: 493 DPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKV 552
DPKMLELS+Y+GIP+LL PVVT+ ++A L+W V EME RY+ M+ +GVRN+ GFN KV
Sbjct: 71 DPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEMERRYRLMAAMGVRNLAGFNRKV 130
Query: 553 AQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIES 612
G + + E +P IVVV+DE AD+MM+ K +E
Sbjct: 131 KDAEEAGTPLTDPLFRRESP-------DDEPPQLSTLPTIVVVVDEFADMMMIVGKKVEE 183
Query: 613 AVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQGAE 672
+ R+AQ ARA+GIH+I+ATQRPSVDVITG IKAN PTRI+FQVSSKIDSRTIL + GAE
Sbjct: 184 LIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQGGAE 243
Query: 673 QLLGQGDMLYM-TGGGRVQRIHGPFVSDIEVEKVVSHLKTQGEAKYIDIKDKILLNEEM- 730
QLLG GDMLY+ G G R+HG FVSD EV +VV K +G YI+ +
Sbjct: 244 QLLGHGDMLYLPPGTGLPIRVHGAFVSDDEVHRVVEAWKLRGAPDYIEDILAGVDEGGGG 303
Query: 731 -------RFSENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKG 783
S S D LY +AV V +ASIS +QR+L IGYNRAA +IE ME G
Sbjct: 304 GGSFDGGDGSGEGSEDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAG 363
Query: 784 VIGPASSTGKREILISSMEE 803
V+ P ++ G RE++ +
Sbjct: 364 VVTPMNTNGSREVIAPAPVR 383
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome
partition, ATP-binding, DNA- binding, cell division,
transmembrane, inner membrane; HET: DNA ATG; 2.25A
{Pseudomonas aeruginosa} PDB: 2iuu_A* (A:1-182)
Length = 182
Score = 143 bits (363), Expect = 6e-35
Identities = 47/128 (36%), Positives = 78/128 (60%), Gaps = 3/128 (2%)
Query: 296 QSNLINHGTGTFVLPSKEILSTSQSPVNQMTFSPKVMQNNACTLKSVLSDFGIQGEIVNV 355
Q+ L LP +L + V Q ++SP+ ++ + L+ L +FG++ + +V
Sbjct: 57 QAPLFVDTAVEGTLPPLSLLD--PAEVKQKSYSPESLEAMSRLLEIKLKEFGVEVSVDSV 114
Query: 356 RPGPVITLYELEPAPGIKSSRIIGLSDDIARSMSAISARV-AVIPRRNAIGIELPNDIRE 414
PGPVIT +E++PA G+K SRI L+ D+ARS++ IS RV VIP + +GIE+PN+ R+
Sbjct: 115 HPGPVITRFEIQPAAGVKVSRISNLAKDLARSLAVISVRVVEVIPGKTTVGIEIPNEDRQ 174
Query: 415 TVMLRDLI 422
V +++
Sbjct: 175 MVRFSEVL 182
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome
partition, ATP-binding, DNA- binding, cell division,
transmembrane, inner membrane; HET: DNA; 2.7A
{Escherichia coli} PDB: 2j5p_A* (A:1-135)
Length = 135
Score = 141 bits (358), Expect = 3e-34
Identities = 49/119 (41%), Positives = 76/119 (63%), Gaps = 3/119 (2%)
Query: 305 GTFVLPSKEILSTSQSPVNQMTFSPKVMQNNACTLKSVLSDFGIQGEIVNVRPGPVITLY 364
T LPS ++L+ P ++ A +++ L+DF I+ ++VN PGPVIT +
Sbjct: 19 PTTPLPSLDLLT--PPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRF 76
Query: 365 ELEPAPGIKSSRIIGLSDDIARSMSAISARV-AVIPRRNAIGIELPNDIRETVMLRDLI 422
EL APG+K++RI LS D+ARS+S ++ RV VIP + +G+ELPN R+TV LR+++
Sbjct: 77 ELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVL 135
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome
partition, ATP-binding, DNA-binding, winged helix,
bacterial cell division; HET: DNA; 1.4A {Pseudomonas
aeruginosa} (A:)
Length = 73
Score = 104 bits (262), Expect = 4e-23
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 733 SENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTG 792
S S D LY +AV V +ASIS +QR+L IGYNRAA +IE ME GV+ P ++ G
Sbjct: 2 SGEGSEDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNG 61
Query: 793 KREILISSMEE 803
RE++ +
Sbjct: 62 SREVIAPAPVR 72
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli}
(A:24-137,A:224-347,A:402-437)
Length = 274
Score = 104 bits (261), Expect = 4e-23
Identities = 40/254 (15%), Positives = 80/254 (31%), Gaps = 31/254 (12%)
Query: 426 VFEKNQCDLAINLGKSI-EGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTP 484
V + K + + A HLL+ G TG+GKSV + + + L R
Sbjct: 1 VSGGKLKRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELAYTGLLRGDR 60
Query: 485 AQCRLIMIDPKMLELS-VYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVR 543
++++DP LS +L P Q+ + + +Q+ + V
Sbjct: 61 ----MVIVDPNGDMLSKFGRDKDIILNPY---DQRTKGWSFFNEIRNDYDWQRYALSVVP 113
Query: 544 NIDGFNLKVAQYHNTGKKFNRTVQTGFDRKT----------GEAIYETEHFDFQHMPYIV 593
+ + + + N + D + +
Sbjct: 114 RMPDGDFSIRSWLEDPNGGNLFITWREDMGPALRPLISAWVDVVCTSILSLPEEPKRRLW 173
Query: 594 VVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS------VDVITGTIKAN 647
+ IDE+A L +++ R +G+ V+ Q S T++A+
Sbjct: 174 LFIDELASLEK------LASLADALTKGRKAGLRVVAGLQSTSQLDDVYGVKEAQTLRAS 227
Query: 648 FPTRISFQVSSKID 661
F + + S +
Sbjct: 228 FRSLVVLGGSRDLT 241
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 40.1 bits (93), Expect = 0.001
Identities = 28/190 (14%), Positives = 63/190 (33%), Gaps = 37/190 (19%)
Query: 440 KSIEGKPIIADLARMPHLLIA-GTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLE 498
K++ P++ L+ P +I +G+GK+ A +LS + P + + + L
Sbjct: 148 KAL---PLL--LSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELA 202
Query: 499 LSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNT 558
+ D + + T +K + + KI + + G V
Sbjct: 203 RQIMDVVTEMGKY---------TEVKTAFGIKDSVPKGA-KIDAQIVIGTPGTVMDLMKR 252
Query: 559 GKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIE----SA- 613
+ R ++ EA + D+ + + ++ + SA
Sbjct: 253 RQLDARDIKVFVLD---EADNMLDQQGL---------GDQSMRIKHLLPRNTQIVLFSAT 300
Query: 614 ----VQRLAQ 619
V++ A+
Sbjct: 301 FSERVEKYAE 310
>1p9r_A General secretion pathway protein E; bacterial type II
secretion system cytoplasmic protein - GSPE, putative
ATPase/ ATP binding protein; 2.50A {Vibrio cholerae}
(A:147-418)
Length = 272
Score = 33.9 bits (76), Expect = 0.083
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 437 NLGKSIEGKPIIADLARMPH--LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494
+LG + L + PH +L+ G TGSGKS T + + L + ++ ++ ++
Sbjct: 2 SLGXTAHNHDNFRRLIKRPHGIILVTGPTGSGKS----TTLYAGLQELNSSERNILTVED 57
Query: 495 KMLEL 499
+
Sbjct: 58 PIEFD 62
>3dma_A Exopolyphosphatase-related protein; structural genomics,
PSI-2, protein structure initiative, northeast
structural genomics consortium, NESG; 2.25A {Bacteroides
fragilis} (A:1-214)
Length = 214
Score = 32.1 bits (72), Expect = 0.30
Identities = 5/38 (13%), Positives = 15/38 (39%)
Query: 607 RKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTI 644
+ ++ + + + VI++ P D I ++
Sbjct: 4 KVIAQAHIDHFTKWFERADKIVIVSHVSPDGDAIGSSL 41
>2ewv_A Twitching motility protein PILT; pilus retraction motor,
ATPase, hexameric PILT, protein transport; HET: ADP;
2.80A {Aquifex aeolicus VF5} PDB: 2eww_A* 2gsz_A*
(A:125-372)
Length = 248
Score = 31.6 bits (70), Expect = 0.35
Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 9/125 (7%)
Query: 446 PIIADLARMPH--LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYD 503
+ +L +L+ G TGSGKS T I S++ + + I+ +E
Sbjct: 2 DKVLELCHRKMGLILVTGPTGSGKS----TTIASMIDYINQTKSYHIITIEDPIEYVFKH 57
Query: 504 GIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFN 563
+ V K+ + + ++ R+++ + TG
Sbjct: 58 KKSIVNQREVGEDTKSFADALRAALREDPDVIFVGEM--RDLETVET-ALRAAETGHLVF 114
Query: 564 RTVQT 568
T+ T
Sbjct: 115 GTLHT 119
>1bf6_A Phosphotriesterase homology protein; hypothetical protein;
1.70A {Escherichia coli} (A:1-88,A:234-291)
Length = 146
Score = 31.2 bits (71), Expect = 0.46
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 614 VQRLAQMARASGIHVIMAT 632
Q + + R +GI+V+ T
Sbjct: 62 AQFMLDVMRETGINVVACT 80
>2e1c_A Putative HTH-type transcriptional regulator PH1519;
DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3}
(A:1-77)
Length = 77
Score = 31.3 bits (71), Expect = 0.47
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 727 NEEMRFSENSSVA-DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785
+ + + V D++ K+ + I+ D KA + I + G+ + I + E GVI
Sbjct: 12 SGLVPRGSHMRVPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVI 71
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family,
transcription, DNA- binding, transcription regulation;
2.4A {Escherichia coli} (A:1-55)
Length = 55
Score = 31.1 bits (71), Expect = 0.51
Identities = 7/46 (15%), Positives = 25/46 (54%)
Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785
D+L + ++ ++ + + + + + ++ G+ +E M++ G+I
Sbjct: 4 DNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGII 49
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.);
complex (helicase/DNA), DNA unwinding, hydrolase/DNA
complex; HET: DNA; 3.00A {Escherichia coli}
(A:1-102,A:185-277)
Length = 195
Score = 31.3 bits (70), Expect = 0.52
Identities = 8/43 (18%), Positives = 13/43 (30%)
Query: 452 ARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494
L+ GSGK+ I I L+ + +
Sbjct: 13 FVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTF 55
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase,
ATP- binding, DNA-binding; 2.50A {Geobacillus
stearothermophilus} (A:1-107,A:194-286)
Length = 200
Score = 30.9 bits (69), Expect = 0.55
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494
LLI GSGK+ + I L+ A ++ I
Sbjct: 26 PLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITF 64
>2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC
family, helix-turn-helix (HTH) domain, structural
genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3}
(A:1-58)
Length = 58
Score = 30.7 bits (70), Expect = 0.65
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785
D + Q V I+ +++ + + L R A I+ +++ G+I
Sbjct: 8 DRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGII 53
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573,
structural genomics; 1.99A {Neisseria meningitidis MC58}
PDB: 2p6s_A 2p6t_A (A:1-60)
Length = 60
Score = 30.7 bits (70), Expect = 0.66
Identities = 4/46 (8%), Positives = 21/46 (45%)
Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785
D + + ++ + + + + R+ + + ++ +E+ G++
Sbjct: 9 DKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIV 54
>2w25_A Probable transcriptional regulatory protein; transcription
regulation, mutant, RV3291C, Glu104Ala, DNA-binding;
2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A*
2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A
2qz8_A (A:1-56)
Length = 56
Score = 30.7 bits (70), Expect = 0.67
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785
DD+ + V + D +A++S + R G+ + S + +E +GV+
Sbjct: 6 DDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVV 51
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator;
LRP/ASNC family Gln binding, structural genomics,
NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB:
2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A*
2efp_A* 2efo_A* (A:1-53)
Length = 53
Score = 30.7 bits (70), Expect = 0.69
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785
D++ + + I+ + K S+ I R + I + I+ +E+ GVI
Sbjct: 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVI 47
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional
regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis}
(A:1-55)
Length = 55
Score = 30.7 bits (70), Expect = 0.70
Identities = 7/46 (15%), Positives = 22/46 (47%)
Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785
D + ++ + +D++ S+ + R++ + + +E G+I
Sbjct: 4 DQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGII 49
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC
family; 2.90A {Pyrococcus furiosus} (A:1-54)
Length = 54
Score = 30.7 bits (70), Expect = 0.78
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785
D+ K ++I+ +D + + I ++LGI ++ +EEKG+I
Sbjct: 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGII 48
>2cyy_A Putative HTH-type transcriptional regulator PH1519;
structural genomics, pyrococcus horikosii OT3, NPPSFA;
HET: MSE GLN; 1.80A {Pyrococcus horikoshii} (A:1-57)
Length = 57
Score = 30.7 bits (70), Expect = 0.78
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785
D++ K+ + I+ D KA + I + G+ + I + E GVI
Sbjct: 6 DEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVI 51
>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC,
PSI, structural genomics, southeast collaboratory for
structural genomics; 2.37A {Pyrococcus furiosus}
(A:1-66)
Length = 66
Score = 30.4 bits (69), Expect = 0.81
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785
DDL + + ++ +D + +IS + +L + I+ ++E+GVI
Sbjct: 16 DDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVI 61
>1yks_A Genome polyprotein [contains: flavivirin protease NS3
catalytic subunit]; helicase, flavivirus, DEAD-BOX,
ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus}
(A:1-145,A:303-387)
Length = 230
Score = 30.1 bits (67), Expect = 1.0
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 451 LARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKM 496
L + ++ G+GK+ + +L + R +++ P
Sbjct: 5 LKKGMTTVLDFHPGAGKTRRF---LPQILAECARRRLRTLVLAPTR 47
>3enu_A Nitrollin, putative uncharacterized protein; betagamma
crystallin, structural protein; 1.86A {Nitrosospira
multiformis} PDB: 3ent_A (A:)
Length = 114
Score = 30.0 bits (67), Expect = 1.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 677 QGDMLYMTGGGRVQRIHGPFVSDIE 701
QGD L+++G + R+ GPF D E
Sbjct: 34 QGDSLFLSGPATLPRLIGPFGYDWE 58
>2vbc_A Dengue 4 NS3 FULL-length protein; transmembrane, RNA
replication, NS2B-NS3 protease; 3.15A {Dengue virus type
4} (A:176-323,A:482-562)
Length = 229
Score = 29.7 bits (66), Expect = 1.2
Identities = 6/50 (12%), Positives = 13/50 (26%)
Query: 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKM 496
+ ++ G+GK+ I I+ + L
Sbjct: 4 DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVA 53
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP,
GTPase, ultrahigh resolution, protein transport; 1.10A
{Thermus aquaticus} (A:93-277)
Length = 185
Score = 29.6 bits (65), Expect = 1.4
Identities = 18/168 (10%), Positives = 39/168 (23%), Gaps = 11/168 (6%)
Query: 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK-----MLELSVYDGIPNLLTP 511
+ G GSGK+ + L + + L G+P L
Sbjct: 9 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVM 68
Query: 512 VVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFD 571
+P+ ++ + G ID + + +
Sbjct: 69 DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA------RLKEVLGPDEV 122
Query: 572 RKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQ 619
+A+ E V + + + +A+
Sbjct: 123 LLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHV 170
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B;
mixed alpha-beta fold, elongated beta-sheet, walker A
motif, P-loop structural motif; 1.90A {Escherichia coli}
(A:)
Length = 174
Score = 29.5 bits (65), Expect = 1.8
Identities = 19/162 (11%), Positives = 47/162 (29%), Gaps = 4/162 (2%)
Query: 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPV 512
+P L A +G+GK+ T++ L+ + R +I ++ V +
Sbjct: 5 MIPLLAFAAWSGTGKT----TLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELR 60
Query: 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDR 572
+ + + M E + + + +
Sbjct: 61 KAGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLF 120
Query: 573 KTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAV 614
+ G E +H+ + + D+ ++ D+E
Sbjct: 121 RDGAGHRPEELVIDRHVIAVASDVPLNLDVALLDINDVEGLA 162
>3h1t_A Type I site-specific restriction-modification system, R
(restriction) subunit; hydrolase, restriction enzyme
HSDR, ATP-binding; 2.30A {Vibrio vulnificus} (A:170-361)
Length = 192
Score = 29.3 bits (64), Expect = 1.8
Identities = 16/163 (9%), Positives = 36/163 (22%), Gaps = 32/163 (19%)
Query: 455 PHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVT 514
LI TG+GK+V + L L
Sbjct: 30 KRSLITXATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFL----------------- 72
Query: 515 NPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKT 574
LV + +++ + + K +
Sbjct: 73 ------ADRNVLVDDPKDKTFTPFG---------DARHKIEGGKVVKSREIYFAIYQSIA 117
Query: 575 GEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRL 617
+ + +F + +++IDE + ++
Sbjct: 118 SDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYF 160
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur
cluster, ABC-ATPase, ATP-binding, cytoplasm,
nucleotide-binding; HET: MES; 2.20A {Escherichia coli}
PDB: 2d3w_A (C:)
Length = 267
Score = 29.4 bits (65), Expect = 1.8
Identities = 40/211 (18%), Positives = 67/211 (31%), Gaps = 19/211 (9%)
Query: 437 NLGKSIEGKPIIAD----LARMPHLLIAGTTGSGKSVAINTMILSLLYRMT--PAQCRLI 490
+L S+E K I+ + I G GSGKS T+ Y +T + +
Sbjct: 25 DLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGK 84
Query: 491 MIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNI-DGFN 549
+ E +GI V P + Y+ + + D
Sbjct: 85 DLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLME 144
Query: 550 LKVAQYHNTGKKFNRTVQTGFD--RKTGEAIYETEHFDFQHMPYIVVVIDE-MADLMMVA 606
K+A R+V GF K I + + + + ++DE + L + A
Sbjct: 145 EKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPE-----LCILDESDSGLDIDA 199
Query: 607 RKDIESAVQRLAQMARASGIHVIMATQRPSV 637
K + V L R I+ T +
Sbjct: 200 LKVVADGVNSL----RDGKRSFIIVTHYQRI 226
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain,
helix turn helix motif, structural genomics, NPPSFA; NMR
{Homo sapiens} (A:)
Length = 98
Score = 29.4 bits (66), Expect = 1.9
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 734 ENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKG 783
+A K + N+ S ++ IG +A I+ E G
Sbjct: 19 SPELLAHGRQKILDLL----NEGSARDLRSLQRIGPKKAQLIVGWRELHG 64
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} (B:)
Length = 263
Score = 28.9 bits (63), Expect = 2.3
Identities = 18/189 (9%), Positives = 51/189 (26%), Gaps = 9/189 (4%)
Query: 453 RMPHLLIAGTTGSGKSVAINTMI-------LSLLYRMTPAQCRLIMIDPKMLELSVYDGI 505
R+ + I G +GKS +N + + + + + L +S +G
Sbjct: 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGG 82
Query: 506 PNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRT 565
L + + T + +++ + L + + + +
Sbjct: 83 NVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFAS 142
Query: 566 VQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASG 625
+ + D+ D ++ + E+ + R+ R
Sbjct: 143 NLYESECMNETEWT--IYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEE 200
Query: 626 IHVIMATQR 634
+ +
Sbjct: 201 QGIPLEYLE 209
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid
protease, membrane protein, X-RAY crystallography; HET:
PA6 PQE; 2.20A {Haemophilus influenzae 86-028np} (A:)
Length = 196
Score = 28.9 bits (64), Expect = 2.3
Identities = 18/169 (10%), Positives = 43/169 (25%), Gaps = 12/169 (7%)
Query: 18 LSDWSKKKMKIVAGLILLCT-VFAITLALGTWDVYDPSFSYITLRSPKNFLGYGGAIFAD 76
+ ++ ++ KI L LC ++ D+ Y
Sbjct: 1 MENFLAQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVH 60
Query: 77 VAIQFFGIASVFFLPPPTMWALSLLFDKKIYCFSKRATAWLINILVSATFFASFSPSQSW 136
+ F + + F L + + T + S
Sbjct: 61 -----LSNLHILF----NLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQN--YVSG 109
Query: 137 PIQNGFGGIIGDLIIRLPFLFFESYPRKLGILFFQMILFLAMSWLLIYS 185
P G G++ ++ + ++ F +L + ++ I
Sbjct: 110 PAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISP 158
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
(A:288-342,A:490-655)
Length = 221
Score = 29.0 bits (64), Expect = 2.4
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 603 MMVARKDIESAVQRLAQMARASGIHVIMAT 632
+ V R D ++R G++V M T
Sbjct: 52 LSVDRHDSAETIRRA----LNLGVNVKMIT 77
>3eef_A N-carbamoylsarcosine amidase related protein; structural
genomics, PSI-2, protein structure initiative; 2.35A
{Thermoplasma acidophilum} (A:)
Length = 182
Score = 29.1 bits (64), Expect = 2.4
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 593 VVVIDEMADLM-----MVARKDIESAVQRLAQMARASGIHVIMATQRP 635
+VV+D + + + +++ + R SG+ V+
Sbjct: 5 LVVVDXVNEFIHGRLATPEAXKTVGPARKVIETFRRSGLPVVYVNDSH 52
>3hjh_A Transcription-repair-coupling factor; MFD, mutation
frequency decline, transcription-coupled DNA repair,
ATP-binding, DNA damage, DNA repair; 1.95A {Escherichia
coli} PDB: 2b2n_A* (A:1-115,A:266-483)
Length = 333
Score = 28.9 bits (63), Expect = 2.6
Identities = 3/35 (8%), Positives = 9/35 (25%)
Query: 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYR 481
+ L+ TG+ + + +
Sbjct: 7 YTLPVKAGEQRLLGELTGAACATLVAEIAERHAGP 41
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA
replication, DNA repair, DNA recombination, hydrolase;
2.90A {Pyrococcus furiosus dsm 3638} (A:1-196)
Length = 196
Score = 28.8 bits (63), Expect = 2.7
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKM 496
+I + + LI TG GK++ ++ YR+T +++M+ P
Sbjct: 16 VIYAKCKETNCLIVLPTGLGKTLIA---MMIAEYRLTKYGGKVLMLAPTK 62
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB;
alpha and beta protein; HET: GSP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2hf8_A* (A:)
Length = 226
Score = 28.6 bits (62), Expect = 2.8
Identities = 23/217 (10%), Positives = 58/217 (26%), Gaps = 10/217 (4%)
Query: 433 DLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMI 492
D+ + + + + + G GSGK++ I +I +L + A +I
Sbjct: 17 DILKANKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76
Query: 493 DPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKV 552
E G + ++ + ++ + I
Sbjct: 77 AKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNLDEIDLLFIE----------N 126
Query: 553 AQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIES 612
F+ + +T M +++ DL DI+
Sbjct: 127 VGNLICPADFDLGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVGADIKK 186
Query: 613 AVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFP 649
++ + + ++ D + I+ +
Sbjct: 187 MENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA
replication, viral replication, nucleotide-binding;
2.10A {Kokobera virus} PDB: 2v6j_A (A:1-140,A:295-379)
Length = 225
Score = 28.5 bits (63), Expect = 3.1
Identities = 6/42 (14%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML 497
++ G+GK+ + + L+ + R +++ P +
Sbjct: 4 LTVLDLHPGAGKTRRV---LPQLVREAVKKRLRTVILAPTRV 42
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin,
fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A
{Dictyostelium discoideum} (B:1-293)
Length = 293
Score = 28.5 bits (62), Expect = 3.2
Identities = 25/195 (12%), Positives = 51/195 (26%), Gaps = 17/195 (8%)
Query: 447 IIADLARMPHLLIAGTTGSGKSVAINTMIL-SLLYR----MTPAQCRLIMIDPKMLELSV 501
+ +D +P +++ G+ SGKS + ++ L R +T L + + +
Sbjct: 17 LGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGS 76
Query: 502 YDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGF----NLKVAQYHN 557
+ + ++ + +R +K V
Sbjct: 77 QTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLV 136
Query: 558 TGKKFNRTVQTGFDRKTGEAIYETEHFDFQH-MPYIVVVIDEMADLMMVARKDIESAVQR 616
+ + I + IV V DL S +
Sbjct: 137 DLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL-------ANSDALQ 189
Query: 617 LAQMARASGIHVIMA 631
LA+ G I
Sbjct: 190 LAKEVDPEGKRTIGV 204
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC
transporter, lipid flippase, hydrolase, inner membrane,
lipid transport, membrane; 5.50A {Vibrio cholerae}
(A:324-582)
Length = 259
Score = 28.4 bits (62), Expect = 3.2
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 459 IAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML 497
+ G +GSGKS N + + Y + L D +
Sbjct: 51 LVGRSGSGKSTIAN--LFTRFYDVDSGSICLDGHDVRDY 87
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural
genomics, protein structure initiative; 2.30A
{Agrobacterium tumefaciens str} (A:1-53)
Length = 53
Score = 28.3 bits (64), Expect = 3.4
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785
D L ++ + I+ D+ +++ + +++G+ I+ EE GVI
Sbjct: 2 DRLDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKXEEDGVI 47
>2j28_9 Signal recognition particle 54; ribosome, protein/RNA
complex; 8.0A {Escherichia coli} (9:92-330)
Length = 239
Score = 28.5 bits (62), Expect = 3.7
Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 1/86 (1%)
Query: 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIP 506
+ +L+AG G+GK+ ++ + L + + ++ D
Sbjct: 1 LNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKH-KKKVLVVSADVYRPAAIKQLETL 59
Query: 507 NLLTPVVTNPQKAVTVLKWLVCEMEE 532
V P +V +
Sbjct: 60 AEQVGVDFFPSDVGQKPVDIVNAALK 85
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding
fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria
phage T4} PDB: 2o0h_A* 2o0k_A* (A:165-385)
Length = 221
Score = 28.3 bits (61), Expect = 3.8
Identities = 2/45 (4%), Positives = 14/45 (31%)
Query: 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIM 491
++ ++ + + GK+ + + + ++
Sbjct: 7 MLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILA 51
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 2zzy_A
(A:)
Length = 186
Score = 28.2 bits (61), Expect = 3.8
Identities = 21/181 (11%), Positives = 44/181 (24%), Gaps = 19/181 (10%)
Query: 459 IAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQK 518
I+G +G+GKS + + + P+ E V
Sbjct: 6 ISGPSGTGKSTLLK-KLFAEYPDSFGFSVSSTTRTPRAGE-------------VNGKDYN 51
Query: 519 AVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAI 578
V+V ++ + + ++ V Q +GK + +
Sbjct: 52 FVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIP 111
Query: 579 YETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVD 638
F F P + + + + I + + V
Sbjct: 112 ELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQA-----ELAYAETGAHDKVI 166
Query: 639 V 639
V
Sbjct: 167 V 167
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
structure; 3.30A {Thermus aquaticus} (D:135-193)
Length = 59
Score = 28.1 bits (62), Expect = 3.8
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 7/23 (30%)
Query: 492 IDPKMLELSVYDGIP----NLLT 510
+DPK +V DG+P LLT
Sbjct: 1 LDPKG---AVLDGVPVEKRQLLT 20
>3b44_A GLPG; intramembrane protease, integral membrane protein,
serine protease, DNA-binding, glycerol metabolism, inner
membrane, transmembrane; HET: BNG; 1.70A {Escherichia
coli} PDB: 2ic8_A* 2nrf_A 3b45_A* 2irv_A* 2o7l_A* (A:)
Length = 180
Score = 28.0 bits (62), Expect = 4.1
Identities = 20/166 (12%), Positives = 43/166 (25%), Gaps = 15/166 (9%)
Query: 28 IVAGLILLCT-VFAITLALGTWDVYDPSFSYITLRSPKNFLGYGGAIFADVAIQFFGIAS 86
+ +++ C VF LG +V F Y F +
Sbjct: 6 VTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFARYFTHALM-----HFSLMH 60
Query: 87 VFFLPPPTMWALSLLFDKKIYCFSKRATAWLINILVSATFFASFSPSQSWPIQNGFGGII 146
+ F + L + I + + S W G G++
Sbjct: 61 ILF----NLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFG--GLSGVV 114
Query: 147 GDLIIRLPFLFFESYPRKLGILFFQMILFLAMSWLLIYSSSAIFQG 192
L+ +++ ++ Q L + ++ +F
Sbjct: 115 YALMG---YVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGM 157
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis,
oxygen-evolving, tetra- manganese, membrane; HET: CL1
PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus
elongatus} (U:48-134)
Length = 87
Score = 28.1 bits (63), Expect = 4.3
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 745 QAVDIVLRDNKASISYIQRRLGIGYNRAASIIEN 778
+ +D+ N +I+ + G+ A I++N
Sbjct: 6 EKIDL----NNTNIAAFIQYRGLYPTLAKLIVKN 35
>1ji0_A ABC transporter; ATP binding protein, structural genomics,
PSI, protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} (A:)
Length = 240
Score = 28.0 bits (62), Expect = 4.4
Identities = 26/177 (14%), Positives = 55/177 (31%), Gaps = 16/177 (9%)
Query: 459 IAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQK 518
+ G G+GK+ ++ ++ L R + D V + L P
Sbjct: 37 LIGANGAGKTTTLS--AIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRRIFP 94
Query: 519 AVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAI 578
+TV + L R K R+++ + K+ T+ G +
Sbjct: 95 ELTVYENLXXGAYNRKDKEGIK--RDLEWIFSLFPRLKERLKQLGGTLSGGEQQXLAIGR 152
Query: 579 YETEHFDFQHMPYIVVVIDE-MADLMMVARKDIESAVQRLAQMARASGIHVIMATQR 634
++ DE L + ++ +Q++ Q G +++ Q
Sbjct: 153 ALXSRPK-------LLXXDEPSLGLAPILVSEVFEVIQKINQ----EGTTILLVEQN 198
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein;
2.00A {Acidianus ambivalens} (F:92-284)
Length = 193
Score = 28.1 bits (61), Expect = 4.5
Identities = 16/171 (9%), Positives = 42/171 (24%), Gaps = 15/171 (8%)
Query: 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLE------LSVYDGIPNLLT 510
+++ G G+GK+ T L Y ++ ++ + L +
Sbjct: 10 IMLVGVQGTGKT----TTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPV 65
Query: 511 PVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFN-----RT 565
+ V + K V + ++ + G+ + A +
Sbjct: 66 YGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEV 125
Query: 566 VQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQR 616
+A F+ +++ +A
Sbjct: 126 TLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSAVAATGA 176
>2gxg_A 146AA long hypothetical transcriptional regulator; winged
helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A
3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A (A:1-121)
Length = 121
Score = 27.6 bits (61), Expect = 5.4
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 750 VLRDNKASISYIQRRLGIGYNRAASIIENMEEKG-VIGPASSTGKREILIS 799
D +++Y+ R + + + ++ +EE G V+ +R+ILI
Sbjct: 45 ATSDGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIE 95
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M
domain, RNA-binding, signal sequence-binding,
helix-turn-helix, protein targeting; 3.20A {Thermus
aquaticus} (A:93-282)
Length = 190
Score = 27.8 bits (60), Expect = 5.5
Identities = 25/167 (14%), Positives = 47/167 (28%), Gaps = 9/167 (5%)
Query: 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK-------MLELSVYDGIPNLL 509
+ G GSGK+ L+L Y+ + L+ D + + L G+P L
Sbjct: 9 WFLVGLQGSGKTTTAAK--LALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE 66
Query: 510 TPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTG 569
+P+ ++ + G ID + + +
Sbjct: 67 VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVL 126
Query: 570 FDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQR 616
EA+ FD + +V+ D A +
Sbjct: 127 DAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGK 173
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus dsm
4304} PDB: 2oaq_1 (1:261-446)
Length = 186
Score = 27.5 bits (60), Expect = 5.5
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 458 LIAGTTGSGKSVAINTM 474
++ G T SGK+ +N +
Sbjct: 4 IVVGETASGKTTTLNAI 20
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A
{Saccharomyces cerevisiae} (A:)
Length = 203
Score = 27.7 bits (60), Expect = 5.8
Identities = 20/200 (10%), Positives = 57/200 (28%), Gaps = 10/200 (5%)
Query: 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPV 512
++ + + G G+GK T L+ + + + + +
Sbjct: 14 QVSVIFVLGGPGAGKG----TQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCI 69
Query: 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDR 572
+ L+ K +K IDGF K+ Q + + + F
Sbjct: 70 KEGQIVPQEITLALLRNAISDNVKANKHKFL-IDGFPRKMDQAISFERDIVESKFILFFD 128
Query: 573 KTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMAT 632
+ + E + I+ + ++ ++ ++ + +
Sbjct: 129 CPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFETKSK---VVRVRCD 185
Query: 633 QRPSVDVITGTIKANFPTRI 652
+ SV+ + ++ +
Sbjct: 186 R--SVEDVYKDVQDAIRDSL 203
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} (A:)
Length = 247
Score = 27.6 bits (60), Expect = 6.0
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 459 IAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELS 500
I G +GSGKS ++ Y Q + D + + +
Sbjct: 40 IVGRSGSGKSTLTK--LIQRFYIPENGQVLIDGHDLALADPN 79
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.70A {Thermus thermophilus HB8}
PDB: 2d2f_A* (A:)
Length = 250
Score = 27.4 bits (60), Expect = 6.2
Identities = 33/211 (15%), Positives = 69/211 (32%), Gaps = 23/211 (10%)
Query: 437 NLGKSIEGKPIIAD----LARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMI 492
+L SI+G+ I+ + + + G G+GKS IL+ T + +++
Sbjct: 8 DLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGK--ILAGDPEYTVERGEILLD 65
Query: 493 DPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKV 552
+LELS + L P + V + + + ++GV K
Sbjct: 66 GENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKA 125
Query: 553 AQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMM----VARK 608
+ + + + R E E + I+ ++ + +
Sbjct: 126 LELLDWDESY-------LSRYLNEGFSGGE----KKRNEILQLLVLEPTYAVLDETDSGL 174
Query: 609 DIES--AVQRLAQMARASGIHVIMATQRPSV 637
DI++ V R R ++ T +
Sbjct: 175 DIDALKVVARGVNAMRGPNFGALVITHYQRI 205
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop
protein, GTP binding, structure 2 function project, S2F,
unknown function; 2.00A {Escherichia coli} (A:1-204)
Length = 204
Score = 27.6 bits (60), Expect = 6.9
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 451 LARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494
+ + L+ G G+GK+ T++ +L + +I +
Sbjct: 1 MNPIAVTLLTGFLGAGKT----TLLRHILNEQHGYKIAVIENEF 40
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
(A:1-249)
Length = 249
Score = 27.4 bits (61), Expect = 7.0
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 437 NLGKSIEGKPIIAD----LARMPHLLIAGTTGSGKSVAINTMILSLLYRMT 483
+G+ +GK I+ +A+ ++ G G+GK+ +N IL+ T
Sbjct: 26 QIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLN--ILNAYEPAT 74
>2p67_A LAO/AO transport system kinase; ARGK, structural genomics,
PSI-2, protein structure initiative; 1.80A {Escherichia
coli K12} (A:1-265)
Length = 265
Score = 27.4 bits (59), Expect = 7.1
Identities = 29/236 (12%), Positives = 60/236 (25%), Gaps = 11/236 (4%)
Query: 404 IGIELPNDIRETV---MLRDLIVSRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIA 460
I + + L + +++ L + I+ L +
Sbjct: 4 INEATLAESIRRLRQGERATLAQAMTLVESRHPRHQALSTQLL-DAIMPYCGNTLRLGVT 62
Query: 461 GTTGSGKSVAINTMILSLLYRMTPAQCRLIM----IDPKMLELSVYDGIPNLLTPVVTNP 516
GT G+GKS + + L+ + + +
Sbjct: 63 GTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIR 122
Query: 517 QK-AVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTG 575
+ L E G + + V Q + + G
Sbjct: 123 PVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGG 182
Query: 576 EAIYETEHFDFQHMPYIVVVIDEMADLMMVA--RKDIESAVQRLAQMARASGIHVI 629
+ + + + IV+ D+ + VA R ESA+ L + V+
Sbjct: 183 DDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVL 238
>2duy_A Competence protein comea-related protein;
helix-hairpin-helix, structural genomics, NPPSFA; 1.75A
{Thermus thermophilus HB8} (A:)
Length = 75
Score = 27.4 bits (61), Expect = 7.1
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 733 SENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIE 777
+ + V + N+AS+ + GIG A I+E
Sbjct: 5 ALGKVAPLPQAQTPVSL----NEASLEELXALPGIGPVLARRIVE 45
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP;
2.10A {Mus musculus} (A:)
Length = 198
Score = 27.4 bits (59), Expect = 7.2
Identities = 12/181 (6%), Positives = 40/181 (22%), Gaps = 11/181 (6%)
Query: 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNP 516
++++G +G+GKS +L L++ + + + V
Sbjct: 7 VVLSGPSGAGKST-----LLKKLFQEHSSIFGFS-VSHTTRNPRPGEEDGKDYYFVTREM 60
Query: 517 QKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGE 576
+ + E + + + R+++
Sbjct: 61 MQRDIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLC---- 116
Query: 577 AIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPS 636
+ + K + +A + +++
Sbjct: 117 -PIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLD 175
Query: 637 V 637
Sbjct: 176 K 176
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding
protein LOLD; structural genomics, NPPSFA; 1.70A
{Aquifex aeolicus VF5} PDB: 2pcl_A (A:)
Length = 224
Score = 27.2 bits (60), Expect = 7.5
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 437 NLGKSIEGKPIIAD----LARMPHLLIAGTTGSGKSVAINTMILSLLYRMT 483
N+ K I G I+ + + + I G +GSGKS + IL LL T
Sbjct: 9 NIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLY--ILGLLDAPT 57
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa}
(A:17-35,A:164-175,A:274-372,A:671-879)
Length = 339
Score = 27.4 bits (60), Expect = 7.6
Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 7/114 (6%)
Query: 72 AIFADVAIQFFGIASVFFLPPPTMWALSLLFDKKIYCFSKRA--TAWLINILVSATFFAS 129
AIFADVA + + P W L L+ + A T + + +
Sbjct: 186 AIFADVATLAIAYDNAPYSQTPVKWNLPKLWGMSVLLGVVLAVGTWITVTTMYAQGENGG 245
Query: 130 FSPSQS-----WPIQNGFGGIIGDLIIRLPFLFFESYPRKLGILFFQMILFLAM 178
+ +Q I R F+ S P ++ LA
Sbjct: 246 IVQNFGNMDEVLFLQISLTENWLIFITRANGPFWSSIPSWQLSGAIFLVDILAT 299
>3dmp_A Uracil phosphoribosyltransferase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.60A {Burkholderia pseudomallei} (A:)
Length = 217
Score = 27.1 bits (59), Expect = 7.6
Identities = 21/165 (12%), Positives = 42/165 (25%), Gaps = 23/165 (13%)
Query: 488 RLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDG 547
+ ++ Y+ NL T L + + + +R G
Sbjct: 42 EITLLMG-------YEITRNLPITTKR----VETPLVEIDAPVIAGKKLAIVPVLRAGVG 90
Query: 548 FNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVAR 607
+ + + R G R E I ++ D M A
Sbjct: 91 MSDGLLELIP----SARVGHIGVYRADDHRPVEYLVRLPDLEDRIFILCDPMVATGYSAA 146
Query: 608 KDIESAVQRLAQMARASGIHVIMA--------TQRPSVDVITGTI 644
I+ +R R + ++ A P V + ++
Sbjct: 147 HAIDVLKRRGVPGERLMFLALVAAPEGVQVFQDAHPDVKLYVASL 191
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF
domain, transcription, RNA binding protein; 2.27A
{Pseudomonas aeruginosa} (A:499-568)
Length = 70
Score = 27.0 bits (60), Expect = 8.8
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 747 VDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKG 783
VD+ N AS + + R G+ A +I+ + + G
Sbjct: 2 VDV----NTASAALLARISGLNSTLAQNIVAHRDANG 34
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding
domain, TK1, UU-TK, transferase; HET: THM; 2.00A
{Ureaplasma parvum} (A:1-155)
Length = 155
Score = 27.1 bits (59), Expect = 9.0
Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 5/109 (4%)
Query: 458 LIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQ 517
I G +GK+ + + L Y ID + + +L + V +
Sbjct: 16 FITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAP 75
Query: 518 KAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTV 566
+ + + + IG+ + F+ ++ + N + V
Sbjct: 76 EILNYIMSNSFND-----ETKVIGIDEVQFFDDRICEVANILAENGFVV 119
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.137 0.398
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 5,985,084
Number of extensions: 276439
Number of successful extensions: 1080
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1072
Number of HSP's successfully gapped: 84
Length of query: 806
Length of database: 4,956,049
Length adjustment: 96
Effective length of query: 710
Effective length of database: 1,710,769
Effective search space: 1214645990
Effective search space used: 1214645990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)