RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62] (806 letters) >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA ATG; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* Length = 574 Score = 515 bits (1326), Expect = e-146 Identities = 240/518 (46%), Positives = 331/518 (63%), Gaps = 19/518 (3%) Query: 296 QSNLINHGTGTFVLPSKEILSTSQSPVNQMTFSPKVMQNNACTLKSVLSDFGIQGEIVNV 355 Q+ L LP +L + V Q ++SP+ ++ + L+ L +FG++ + +V Sbjct: 57 QAPLFVDTAVEGTLPPLSLLD--PAEVKQKSYSPESLEAMSRLLEIKLKEFGVEVSVDSV 114 Query: 356 RPGPVITLYELEPAPGIKSSRIIGLSDDIARSMSAISARV-AVIPRRNAIGIELPNDIRE 414 PGPVIT +E++PA G+K SRI L+ D+ARS++ IS RV VIP + +GIE+PN+ R+ Sbjct: 115 HPGPVITRFEIQPAAGVKVSRISNLAKDLARSLAVISVRVVEVIPGKTTVGIEIPNEDRQ 174 Query: 415 TVMLRDLIVSRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTM 474 V +++ S +++++ + + LG I G+PII DLA+MPHLL+AGTTGSGKSV +N M Sbjct: 175 MVRFSEVLSSPEYDEHKSTVPLALGHDIGGRPIITDLAKMPHLLVAGTTGSGKSVGVNAM 234 Query: 475 ILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERY 534 +LS+L++ TP++ RLIMIDPKMLELS+Y+GIP+LL PVVT+ ++A L+W V EME RY Sbjct: 235 LLSILFKSTPSEARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEMERRY 294 Query: 535 QKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVV 594 + M+ +GVRN+ GFN KV G + + E +P IVV Sbjct: 295 RLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRES-------PDDEPPQLSTLPTIVV 347 Query: 595 VIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISF 654 V+DE AD+MM+ K +E + R+AQ ARA+GIH+I+ATQRPSVDVITG IKAN PTRI+F Sbjct: 348 VVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAF 407 Query: 655 QVSSKIDSRTILGEQGAEQLLGQGDMLYMTGGGRV-QRIHGPFVSDIEVEKVVSHLKTQG 713 QVSSKIDSRTIL + GAEQLLG GDMLY+ G + R+HG FVSD EV +VV K +G Sbjct: 408 QVSSKIDSRTILDQGGAEQLLGHGDMLYLPPGTGLPIRVHGAFVSDDEVHRVVEAWKLRG 467 Query: 714 EAKYID--------IKDKILLNEEMRFSENSSVADDLYKQAVDIVLRDNKASISYIQRRL 765 YI+ + S S D LY +AV V +ASIS +QR+L Sbjct: 468 APDYIEDILAGVDEXXXXXXSFDGGDGSGEGSEDDPLYDEAVRFVTESRRASISAVQRKL 527 Query: 766 GIGYNRAASIIENMEEKGVIGPASSTGKREILISSMEE 803 IGYNRAA +IE ME GV+ P ++ G RE++ + Sbjct: 528 KIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPVR 565 >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* Length = 512 Score = 498 bits (1284), Expect = e-141 Identities = 240/497 (48%), Positives = 315/497 (63%), Gaps = 11/497 (2%) Query: 305 GTFVLPSKEILSTSQSPVNQMTFSPKVMQNNACTLKSVLSDFGIQGEIVNVRPGPVITLY 364 T LPS ++L+ P ++ A +++ L+DF I+ ++VN PGPVIT + Sbjct: 19 PTTPLPSLDLLT--PPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRF 76 Query: 365 ELEPAPGIKSSRIIGLSDDIARSMSAISARVA-VIPRRNAIGIELPNDIRETVMLRDLIV 423 EL APG+K++RI LS D+ARS+S ++ RV VIP + +G+ELPN R+TV LR+++ Sbjct: 77 ELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLD 136 Query: 424 SRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMT 483 + F N L + LGK I G+P++ADLA+MPHLL+AGTTGSG SV +N MILS+LY+ Sbjct: 137 NAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ 196 Query: 484 PAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVR 543 P R IMIDPKMLELSVY+GIP+LLT VVT+ + A L+W V EME RY+ MS +GVR Sbjct: 197 PEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVR 256 Query: 544 NIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLM 603 N+ G+N K+A+ + D + +H + PYIVV++DE ADLM Sbjct: 257 NLAGYNEKIAEADRMMRPIPDPYWKPGD------SMDAQHPVLKKEPYIVVLVDEFADLM 310 Query: 604 MVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSR 663 M K +E + RLAQ ARA+GIH+++ATQRPSVDVITG IKAN PTRI+F VSSKIDSR Sbjct: 311 MTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSR 370 Query: 664 TILGEQGAEQLLGQGDMLYMTGG-GRVQRIHGPFVSDIEVEKVVSHLKTQGEAKYID-IK 721 TIL + GAE LLG GDMLY R+HG FV D EV VV K +G +Y+D I Sbjct: 371 TILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGIT 430 Query: 722 DKILLNEEMRFSENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEE 781 + + D L+ QAV V KASIS +QR+ IGYNRAA IIE ME Sbjct: 431 SDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEA 490 Query: 782 KGVIGPASSTGKREILI 798 +G++ G RE+L Sbjct: 491 QGIVSEQGHNGNREVLA 507 >2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A* Length = 73 Score = 97.5 bits (243), Expect = 1e-20 Identities = 32/71 (45%), Positives = 43/71 (60%) Query: 733 SENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTG 792 S S D LY +AV V +ASIS +QR+L IGYNRAA +IE ME GV+ P ++ G Sbjct: 2 SGEGSEDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNG 61 Query: 793 KREILISSMEE 803 RE++ + Sbjct: 62 SREVIAPAPVR 72 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 55.7 bits (134), Expect = 4e-08 Identities = 99/723 (13%), Positives = 206/723 (28%), Gaps = 318/723 (43%) Query: 196 VPYNMADCLISDESKTQLEDVMASSLLKY---------------LCNMFRVWIGRFLGFA 240 VP +QL++ L + L G+FLG+ Sbjct: 22 VPTASFFIA------SQLQEQFNKILPEPTEGFAADDEPTTPAELV-------GKFLGY- 67 Query: 241 FFISFVKKCLGDSNISVDDYRKKIEPTLDVSFHDAI----DINSITEYQLNADIVQNISQ 296 V + S + D + L F + DI+++ +L + Sbjct: 68 -----VSSLVEPSKVGQFDQVLNL--CLT-EFENCYLEGNDIHALA-AKLLQE------- 111 Query: 297 SNLINHGTGTFVLPSKEILST-------SQSPVNQMTFSPKVMQNNACTLKSVLSD---- 345 T ++ +KE++ ++ P K N+A ++V Sbjct: 112 -------NDTTLVKTKELIKNYITARIMAKRP------FDK-KSNSA-LFRAVGEGNAQL 156 Query: 346 ---FGIQG----------EIVNV-RP--GPVI-----TLYELEPAP---------GIKSS 375 FG QG ++ G +I TL EL G+ Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-- 214 Query: 376 RIIG-LSDDIARSMSA--ISARVAVIPRRNAIGIELPNDIRETVMLRDLIVSRVFEKNQC 432 I+ L + +S ++ P IG+ + ++ +++ Sbjct: 215 -ILEWLENPSNTPDKDYLLSIPISC-P---LIGV--------IQLAHYVVTAKL------ 255 Query: 433 DLAINLGKSIEGKPIIADLARMPHLLIAGTTG-S-GKSVAINTMILSLLYRMTPAQCRLI 490 LG + P +L + G TG S G A I A+ Sbjct: 256 -----LGFT----P--GELRS----YLKGATGHSQGLVTA--VAI---------AETD-- 287 Query: 491 MIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNL 550 + S + + +KA+TVL + IGVR Sbjct: 288 --SWE----SFFV-----------SVRKAITVLFF--------------IGVRC------ 310 Query: 551 KVAQYHNTGKKFNRT------VQTGFDRKTGEAIYETEHFDFQHMP-YIVVVIDEMADLM 603 + + T ++ + E + P ++ + ++L Sbjct: 311 -----YEA---YPNTSLPPSILEDSLEN--NEGV-----------PSPMLSI----SNL- 344 Query: 604 MVARKDIESAVQRL-AQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDS 662 ++ ++ V + + + + + + ++ V++G P + S ++ Sbjct: 345 --TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL-VVSG------PPQ-SLY---GLNL 391 Query: 663 RTILGEQGAEQLLGQGDMLYMTGGGRV---QR----------IHGPFVSDIEVEKVVSHL 709 L + A L Q R+ +R + PF S + + + Sbjct: 392 T--LRKAKAPSGLDQS---------RIPFSERKLKFSNRFLPVASPFHSHL-LVPASDLI 439 Query: 710 KTQGEAKYIDIKDKILL--------NEEMR-FSENSSVADDLYKQAVDIVLRDN----KA 756 + K + ++R S + +++ + VD ++R Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS--ISERI----VDCIIRLPVKWETT 493 Query: 757 ---SISYIQRRL--------GIG--YNRAASIIENMEEKGVIGPASSTGKREILISSMEE 803 ++I L G+G +R N + GV R I+ +++ Sbjct: 494 TQFKATHI---LDFGPGGASGLGVLTHR------NKDGTGV---------RVIVAGTLDI 535 Query: 804 CHE 806 + Sbjct: 536 NPD 538 Score = 53.8 bits (129), Expect = 1e-07 Identities = 83/500 (16%), Positives = 140/500 (28%), Gaps = 237/500 (47%) Query: 183 IYSSSAIF--QGKRRVPYNMADCLISDESKTQLEDVMASSLLKYLCNMFRVWIGRFLGFA 240 + AIF QG N D +E L+ L + V +G Sbjct: 156 LV---AIFGGQG------NTDDYF--EE-------------LRDLYQTYHVLVGDL---- 187 Query: 241 FFISFVKKCLGDSNISVDDYRKKIEPTLDVSFHDAIDINSITEYQLNADIVQNISQSNLI 300 I F + L S + DA + + +I++ + Sbjct: 188 --IKFSAETL--SELIRTT-------------LDAEKV-----FTQGLNILE------WL 219 Query: 301 NHGTGTFVLPSKEILSTSQSPVN-------QM-----TFSPKVMQNNACTLKSVLSDFGI 348 + + T P K+ L + P++ Q+ T K++ L+S L G Sbjct: 220 ENPSNT---PDKDYLLSI--PISCPLIGVIQLAHYVVTA--KLLGFTPGELRSYLK--GA 270 Query: 349 ----QGEIVNVRPGPVI-------TLYELEPAPGIKSSRI---IGLSDDIARSMSAISAR 394 QG + V I + + K+ + IG+ R A Sbjct: 271 TGHSQGLVTAV----AIAETDSWESFFVS----VRKAITVLFFIGV-----RCYEAY--- 314 Query: 395 VAVIPRRNAIGIELPNDIRE----------TVML--RDLIVSRVFEK-----NQC----- 432 P + LP I E + ML +L +V + N Sbjct: 315 ----PNTS-----LPPSILEDSLENNEGVPSPMLSISNLTQEQV-QDYVNKTNSHLPAGK 364 Query: 433 DLAINL----------G--KSIEG---------KPIIADLARMPHLLIAGTTGSGKSVAI 471 + I+L G +S+ G P D +R+P S + + Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF--------SERKLKF 416 Query: 472 NTMIL--------SLLYRMTPA-----QCRLIMIDPKMLELSVYD---G----------I 505 + L LL + + + K +++ VYD G Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476 Query: 506 PNLLTPVVTNPQKAVTVLKWLVCEMEERYQKM-------------SKIGV---RNIDGFN 549 ++ ++ P +KW E + S +GV RN DG Sbjct: 477 ERIVDCIIRLP------VKW------ETTTQFKATHILDFGPGGASGLGVLTHRNKDG-- 522 Query: 550 LKVAQYHNTGKKFNRTVQTG 569 TG R + G Sbjct: 523 --------TGV---RVIVAG 531 >1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A* Length = 437 Score = 46.8 bits (110), Expect = 2e-05 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 5/54 (9%) Query: 442 IEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 + G P+ D HLL+ G TG+GKSV + + + L R R++++DP Sbjct: 42 VAGVPMPRDAEPR-HLLVNGATGTGKSVLLRELAYTGLLR----GDRMVIVDPN 90 >3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP- binding, ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* Length = 251 Score = 36.3 bits (83), Expect = 0.030 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 9/81 (11%) Query: 441 SIEGKPIIADLARMPHLLIAGT-TGSGKSVAINTMILSLLYR-------MTPAQCRLIMI 492 ++G + + M L++ GT TG GK+V + + S + P Q Sbjct: 13 GLQGTENLYFQSHMTILVVTGTGTGVGKTV-VCAALASAARQAGIDVAVCKPVQTGTARG 71 Query: 493 DPKMLELSVYDGIPNLLTPVV 513 D + E+ G+ L Sbjct: 72 DDDLAEVGRLAGVTQLAGLAR 92 >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} Length = 261 Score = 34.0 bits (77), Expect = 0.12 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 7/62 (11%) Query: 446 PIIADLARMPH--LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYD 503 + +L +L+ G TGSGKS I +MI +I + V+ Sbjct: 15 DKVLELCHRKMGLILVTGPTGSGKSTTIASMI-----DYINQTKSYHIITIEDPIEYVFK 69 Query: 504 GI 505 Sbjct: 70 HK 71 >2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* Length = 509 Score = 33.9 bits (77), Expect = 0.12 Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 3/148 (2%) Query: 49 DVYDPSFSYITLRSPKNFLGYGGAIFADVAIQFFGIASVFFLPPPTMWALSLLFDKKIYC 108 V D + + + LG + + FGI L + LL + Sbjct: 195 TVVDNFYLVALILAMGTSLGLATPLVTECIQYLFGIPHTLQLDAIIISCWILLNAICVAF 254 Query: 109 FSKRATAWLIN---ILVSATFFASFSPSQSWPIQNGFGGIIGDLIIRLPFLFFESYPRKL 165 ++ + L F + I N F +G L++ +P + F + P Sbjct: 255 GLQKGVKIASDVRTYLSFLMLGWVFIVGGASFIVNYFTDSVGTLLMYMPRMLFYTDPIGK 314 Query: 166 GILFFQMILFLAMSWLLIYSSSAIFQGK 193 G +F W++ +IF + Sbjct: 315 GGFPQAWTVFYWAWWVIYAIQMSIFLAR 342 >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 340 Score = 33.9 bits (76), Expect = 0.17 Identities = 22/176 (12%), Positives = 59/176 (33%), Gaps = 11/176 (6%) Query: 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPV 512 ++PHLL G G+GK+ + I++L + ++++ + D + N + Sbjct: 45 KLPHLLFYGPPGTGKT----STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDF 100 Query: 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNI---DGFNLKVAQYHNTGKKFNRTV--- 566 + Q K ++ + + ++ +R + N + N K + Sbjct: 101 ASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ 160 Query: 567 -QTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMA 621 + + E + + + + L+ ++ D+ + L Sbjct: 161 CTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCK 216 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 33.4 bits (75), Expect = 0.19 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Query: 606 ARKDIESAVQRLAQMARASGIHVIMAT----QRPSVDVI 640 A+KD+E QR ++ + I+ +A Q+P D+I Sbjct: 116 AKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADII 154 >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 418 Score = 31.8 bits (71), Expect = 0.63 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 6/63 (9%) Query: 457 LLIAGTTGSGKSVAINTMILSLLYRMTPA-----QCRLIMIDPKMLELSVYDGIPNLLTP 511 L++ G +G GKS IN++ L+ LY + + ++ + + G+ LLT Sbjct: 34 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLI-KEGGVQLLLTI 92 Query: 512 VVT 514 V T Sbjct: 93 VDT 95 >2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus} Length = 165 Score = 31.5 bits (71), Expect = 0.71 Identities = 13/42 (30%), Positives = 26/42 (61%) Query: 744 KQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785 + + +L D + S IQ+RLG+ + RA ++I +E++G + Sbjct: 13 LRDILALLADGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRV 54 >1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A Length = 470 Score = 31.3 bits (71), Expect = 0.77 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 14/65 (21%) Query: 596 IDEMADLMMVARKDIESAV---------QRLAQMARASGIHVIMATQRPSVDVITGTIKA 646 I E +D +MVAR D+ + + + + + VI AT ++ IK Sbjct: 233 ILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATM-----MLDSMIKN 287 Query: 647 NFPTR 651 PT Sbjct: 288 PRPTD 292 >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Length = 327 Score = 31.4 bits (70), Expect = 0.87 Identities = 26/180 (14%), Positives = 57/180 (31%), Gaps = 11/180 (6%) Query: 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPV 512 MPHLL AG G GK+ T L+L + R ++ + + I + Sbjct: 45 SMPHLLFAGPPGVGKT----TAALALARELFGENWRHNFLELNASDERGINVIREKVKEF 100 Query: 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNI---DGFNLKVAQYHNTGKKFNRTVQTG 569 K + + + + ++ +R N++ N K +Q+ Sbjct: 101 ARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 Query: 570 FDRKTGEAIYETEHFDFQHM----PYIVVVIDEMADLMMVARKDIESAVQRLAQMARASG 625 + + + + + + + ++ +A D+ A+ L A Sbjct: 161 CAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDK 220 >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 323 Score = 31.1 bits (69), Expect = 1.0 Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 4/178 (2%) Query: 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPV 512 MPH++I+G G GK+ +++ + LL R + V + I + Sbjct: 41 NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKK 100 Query: 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGF-- 570 + P ++ + + + + + + A N K +Q+ Sbjct: 101 LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAI 160 Query: 571 --DRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGI 626 K + + + D + ++ A D+ A+ L G+ Sbjct: 161 LRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGL 218 >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 Score = 31.1 bits (69), Expect = 1.1 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 10/93 (10%) Query: 457 LLIAGTTGSGKSVAINTMILS-LLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVT- 514 +L G TG GKS ++T+ + + + +L + LT V T Sbjct: 45 ILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDL-QESNVRLKLTIVSTV 103 Query: 515 -------NPQKAVTVLKWLVCEMEERYQKMSKI 540 +++++ + E Q+ KI Sbjct: 104 GFGDQINKEDSYKPIVEFIDAQFEAYLQEELKI 136 >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 Score = 31.1 bits (70), Expect = 1.1 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 437 NLGKSIEGKPIIAD----LARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMI 492 +G+ +GK I+ +A+ ++ G G+GK+ +N IL+ T L Sbjct: 26 QIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLN--ILNAYEPATSGTVNLFGK 83 Query: 493 DP 494 P Sbjct: 84 MP 85 >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* Length = 226 Score = 30.8 bits (68), Expect = 1.2 Identities = 21/197 (10%), Positives = 53/197 (26%), Gaps = 10/197 (5%) Query: 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPV 512 + G GSGK++ I +I +L + A +I E G + Sbjct: 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNT 96 Query: 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDR 572 ++ + ++ + ++ F+ Sbjct: 97 GKECHLDAHLVGHALEDLNLDEIDL----------LFIENVGNLICPADFDLGTHKRIVV 146 Query: 573 KTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMAT 632 + +T M +++ DL DI+ ++ + + ++ Sbjct: 147 ISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLK 206 Query: 633 QRPSVDVITGTIKANFP 649 D + I+ + Sbjct: 207 TMEGFDKVLEFIEKSVK 223 >3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} Length = 583 Score = 30.5 bits (68), Expect = 1.5 Identities = 7/87 (8%), Positives = 24/87 (27%), Gaps = 1/87 (1%) Query: 700 IEVEKVVSHLKTQGEAKYIDIKDKILLNEEMRFSENSSVADDLYKQAVDIVLRDNK-ASI 758 +++H + + S A + L + + Sbjct: 474 AGAPLIIAHDGVWLLGNACREILRKVEPSPFSPVRYLSTDQAELTNAAMLWLSEVGDLAT 533 Query: 759 SYIQRRLGIGYNRAASIIENMEEKGVI 785 S + G+ A + ++ + ++ + Sbjct: 534 SDLMAMCGVSRGTAKACVDGLVDEERV 560 >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 361 Score = 30.7 bits (68), Expect = 1.5 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%) Query: 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQC------RLIMIDPKMLELSVYDGIPNLLT 510 L++ G +G GKS IN++ L+ LY R + I+ +E+ G+ LT Sbjct: 40 LMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEI-EERGVKLRLT 98 Query: 511 PVVT 514 V T Sbjct: 99 VVDT 102 >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcription; HET: ATP; 2.95A {Saccharomyces cerevisiae} Length = 460 Score = 30.4 bits (68), Expect = 1.6 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Query: 436 INLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 NL +E + P ++I G + +GK+ +++ + S + Q I +DP+ Sbjct: 122 YNLHFMLEKIRMSN--FEGPRVVIVGGSQTGKT-SLSRTLCSYALKFNAYQPLYINLDPQ 178 Query: 496 MLELSV 501 +V Sbjct: 179 QPIFTV 184 >3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, ATP-binding, glycolysis, magnesium, metal-binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3ktx_A* 3e0w_A 3e0v_A Length = 499 Score = 30.2 bits (68), Expect = 1.7 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 9/47 (19%) Query: 596 IDEMADLMMVARKDIE---------SAVQRLAQMARASGIHVIMATQ 633 I E +D +MVAR D+ A + L +G VI ATQ Sbjct: 252 IIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQ 298 >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.70A {Thermus thermophilus HB8} PDB: 2d2f_A* Length = 250 Score = 30.3 bits (68), Expect = 1.9 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 4/51 (7%) Query: 437 NLGKSIEGKPIIADL----ARMPHLLIAGTTGSGKSVAINTMILSLLYRMT 483 +L SI+G+ I+ + + + G G+GKS + Y + Sbjct: 8 DLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE 58 >2ex3_B Protein GP3, DNA terminal protein; DNA polymerase: protein primer complex, transferase/replication complex; HET: DNA; 3.00A {Bacillus phage PHI29} SCOP: a.263.1.1 Length = 230 Score = 30.1 bits (67), Expect = 2.0 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 20/91 (21%) Query: 385 ARSMSAISARVAVIPRRNAIGIELPND-----IRETVMLRDLIVS-------RVFEKNQC 432 + I R+A+ + GI P+D +R LR L S + +EK Sbjct: 85 GKPQGTIEQRIAMTSPAHVTGINRPHDFDFSKVRSYSRLRTLEESMEMRTDPQYYEKKMI 144 Query: 433 DLAINLGKSIEGK--------PIIADLARMP 455 L +N KS+EG +I +L ++P Sbjct: 145 QLQLNFIKSVEGSFNSFDAADELIEELKKIP 175 >3enu_A Nitrollin, putative uncharacterized protein; betagamma crystallin, structural protein; 1.86A {Nitrosospira multiformis} PDB: 3ent_A Length = 114 Score = 30.0 bits (67), Expect = 2.0 Identities = 11/25 (44%), Positives = 16/25 (64%) Query: 677 QGDMLYMTGGGRVQRIHGPFVSDIE 701 QGD L+++G + R+ GPF D E Sbjct: 34 QGDSLFLSGPATLPRLIGPFGYDWE 58 >3cmn_A Putative hydrolase; PSI-II, NYSGXRC, apoenzyme, helical protein, 10492M, structural genomics, protein structure initiative; 2.25A {Chloroflexus aurantiacus j-10-fl} SCOP: d.92.1.16 Length = 372 Score = 29.9 bits (67), Expect = 2.0 Identities = 35/212 (16%), Positives = 76/212 (35%), Gaps = 21/212 (9%) Query: 374 SSRIIGLSDDIARSMSAISARVAVIP---RRNAIGIELP-NDIRETVMLRDLIVSRVFEK 429 + R++G D S A + + R + L D R + L ++ + FE Sbjct: 135 AQRVLGQYDLSLLSAEATGGSLYFVEPNIARVQQQLGLSDEDFRLWITLHEMTHAFEFEA 194 Query: 430 NQCDLAINLGKSIE--GKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQC 487 + + +E + + + L+ + + + + +TP Q Sbjct: 195 YP-WVRTYFRELLEQNFALVSGQMLSSGNSLVDMLMRLLQGIGSGQHWIETV--LTPEQ- 250 Query: 488 RLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIG--VRNI 545 R + + L +S+ +G N + V + + ++ +R ++ + + V + Sbjct: 251 RAVFDRIQAL-MSLIEGYGNHVMNAVGRRL--LPSFNQIEQQIAQRQRQRTMLDQMVFRL 307 Query: 546 DGFNLKVAQYHNTGKKFNRTV-----QTGFDR 572 G +LK+AQY G+ F V R Sbjct: 308 TGLDLKLAQY-QQGEAFVNAVVAARGIQFASR 338 >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} Length = 171 Score = 29.8 bits (65), Expect = 2.3 Identities = 20/175 (11%), Positives = 56/175 (32%), Gaps = 14/175 (8%) Query: 454 MPHLL-IAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPV 512 M +L I GT+ SGK+ T+I ++ + R + + + + Sbjct: 1 MSLILSIVGTSDSGKT----TLITRMMPILRERGLR-VAVVKRHAHGDFEIDKEGKDSWK 55 Query: 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDR 572 + + +++S+ ++D + ++ + + Sbjct: 56 ---IYNSGADVVIASPVKLAFIRRVSEEEGNDLDWIYERYLSDYDLVITEGFSK---AGK 109 Query: 573 KTGEAIYETEHFDFQHMPYIVVVI--DEMADLMMVARKDIESAVQRLAQMARASG 625 + + E + I+ V+ + + R ++E + + + R G Sbjct: 110 DRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLREGG 164 >2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} SCOP: a.4.5.11 c.37.1.20 Length = 357 Score = 29.8 bits (65), Expect = 2.3 Identities = 38/340 (11%), Positives = 95/340 (27%), Gaps = 35/340 (10%) Query: 452 ARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTP 511 R P L+ G +GKS I I L R Sbjct: 28 LRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKF--------------------- 66 Query: 512 VVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFD 571 ++ K + E+++ K+ K + N Sbjct: 67 ----EERNYISYKDFLLELQKEINKLVKRLPSLLKAL----KNIQGIVIMGNEIKFNWNR 118 Query: 572 RKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMA 631 + E F+ +++V+DE +L+ + ++ A+ + + + Sbjct: 119 KDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGS 178 Query: 632 TQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQGAEQLLGQGDMLYMTGGGRVQR 691 D + + +F + + + D+ + ++ Sbjct: 179 EMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEK 238 Query: 692 IHG--PFVSDIEVEKVVSHLKTQGEAKYIDIKDKILLNEEMRFSENSSVADDLYKQAVDI 749 I G +++ + + + ++ K++L E F +A Y + Sbjct: 239 IGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNIMRT 298 Query: 750 VLRDNKAS----ISYIQRRLGIGYNRAASIIENMEEKGVI 785 + + K S ++ + I + + + + + I Sbjct: 299 LSKCGKWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWI 338 >2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7 Length = 98 Score = 29.8 bits (67), Expect = 2.5 Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 1/52 (1%) Query: 733 SENSSVADDLYKQAVDIVLRD-NKASISYIQRRLGIGYNRAASIIENMEEKG 783 ++ +L +L N+ S ++ IG +A I+ E G Sbjct: 13 CWELQISPELLAHGRQKILDLLNEGSARDLRSLQRIGPKKAQLIVGWRELHG 64 >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Length = 235 Score = 29.5 bits (66), Expect = 3.0 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 447 IIADLARMPHLLIAGTTGSGKSVAINTMIL-SLLYRMTPAQCRLIMIDPK 495 I+ +++ ++I G TG GK+ + IL + A+C +++ P+ Sbjct: 69 ILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPR 118 >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} Length = 550 Score = 29.3 bits (65), Expect = 3.2 Identities = 24/189 (12%), Positives = 54/189 (28%), Gaps = 30/189 (15%) Query: 448 IADLARMPHLLIAGTTGSGKSVAINTMILS--LLYRMTPAQCRLIMIDPKMLELSVYDGI 505 AD P +L+AG +GK+ I ++ R+ P Sbjct: 59 DADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTT----------------- 101 Query: 506 PNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRT 565 + V+ + LV + E+ ++K++ G + + + + Sbjct: 102 -DCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFG-NTFLNRFMCAQLPNQVLESISII 159 Query: 566 VQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMV----ARKDIESAVQRLAQMA 621 G + + F + E DL+++ + +I Sbjct: 160 DTPGILSGAKQRVSRGYDFPAVLRWFA-----ERVDLIILLFDAHKLEISDEFSEAIGAL 214 Query: 622 RASGIHVIM 630 R + + Sbjct: 215 RGHEDKIRV 223 >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 Score = 29.3 bits (65), Expect = 3.2 Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 3/51 (5%) Query: 444 GKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494 G+ L + ++ GSGK+ I + ++ + R ++ P Sbjct: 11 GRGSPNMLRKRQMTVLDLHPGSGKTRKI---LPQIIKDAIQQRLRTAVLAP 58 >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, cell cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* Length = 301 Score = 29.4 bits (65), Expect = 3.2 Identities = 11/28 (39%), Positives = 17/28 (60%) Query: 457 LLIAGTTGSGKSVAINTMILSLLYRMTP 484 L++ G +G GKS IN++ L+ LY Sbjct: 21 LMVVGESGLGKSTLINSLFLTDLYPERV 48 >2r44_A Uncharacterized protein; YP_676785.1, putative ATPase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Length = 331 Score = 29.3 bits (64), Expect = 3.3 Identities = 24/249 (9%), Positives = 59/249 (23%), Gaps = 12/249 (4%) Query: 437 NLGKSIEGKP------IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLI 490 +GK + G+ +I H+L+ G G K++++NT+ ++ Q Sbjct: 24 EVGKVVVGQKYMINRLLIGICTGG-HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPD 82 Query: 491 MIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVL----KWLVCEMEERYQKMSKIGVRNID 546 ++ ++ +Y+ + + + M + V D Sbjct: 83 LLPSDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGD 142 Query: 547 GFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVA 606 + N Q G + ++ M + + Sbjct: 143 T-TYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMN 201 Query: 607 RKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTIL 666 + + + I + A + Sbjct: 202 FNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGA 261 Query: 667 GEQGAEQLL 675 + A L Sbjct: 262 STRAAINLN 270 >3iey_A TRNA-splicing endonuclease; protein heterodimer, endonuclease, hydrolase, nuclease, tRNA processing, hydrolase/RNA binding protein complex; 2.11A {Nanoarchaeum equitans} Length = 154 Score = 29.1 bits (65), Expect = 4.0 Identities = 8/71 (11%), Positives = 24/71 (33%), Gaps = 8/71 (11%) Query: 535 QKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHF-------DFQ 587 ++ K + + F ++ Y K T+ T +Y+ + + Sbjct: 43 EEFLKKCLTYDERFLIRYKAYKELRDK-GYTLGTALKFGADFRVYDIGVIPKKGKRSERE 101 Query: 588 HMPYIVVVIDE 598 H +++ + + Sbjct: 102 HSKWVLYPVSK 112 >3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Score = 28.9 bits (64), Expect = 4.7 Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 2/37 (5%) Query: 766 GIGYNRAASIIENMEEKGVIGPASSTGKREILISSME 802 G+ +++M E GV+ K + + Sbjct: 463 GLDIEAEVPAVKDMLEAGVLDTYLG--KYWAIKLATN 497 >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319 Score = 28.8 bits (63), Expect = 4.8 Identities = 20/172 (11%), Positives = 48/172 (27%), Gaps = 3/172 (1%) Query: 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMI-DPKMLELSVYDGIPNLLTP 511 +PHLL +G G+GK+ + L + D + +++ + T Sbjct: 37 NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96 Query: 512 VVTNPQKAVTVLKWLVCEMEERYQ--KMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTG 569 + + L + + + F L + Sbjct: 97 PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 Query: 570 FDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMA 621 + + + + + + D + L+ ++ D A+ L A Sbjct: 157 RFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAA 208 >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 386 Score = 28.9 bits (63), Expect = 4.9 Identities = 37/369 (10%), Positives = 106/369 (28%), Gaps = 40/369 (10%) Query: 428 EKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQC 487 E +A L + + ++ I G TG+GK+ + +LS L++ + Sbjct: 26 EDQIRKIASILAPLYREE-------KPNNIFIYGLTGTGKTAVVK-FVLSKLHKKFLGKF 77 Query: 488 RLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDG 547 + + I+ + ++ L + V P +++ + ++ S++ + + Sbjct: 78 KHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEI 137 Query: 548 FNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVAR 607 + + +Y+ + + + I D+ V Sbjct: 138 DA-------------------FVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 Query: 608 KDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILG 667 D + + + P + ++ Sbjct: 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDA 238 Query: 668 EQGAEQLLGQGDMLYMTGGGRVQRIHGPFVSDIEVEKVVSHLKTQGEAKYIDIKDKIL-L 726 + + L G++ +V+ + V + E ++ K ++ + Sbjct: 239 RRALDLLRVSGEIAERMKDTKVKEEY---VYMAKEEIERDRVRDIILTLPFHSKLVLMAV 295 Query: 727 NEEMRFSENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIG 786 S +Y+ ++I + +++ R + II ++ G++ Sbjct: 296 VSISSEENVVSTTGAVYETYLNICKKLGVEAVT---------QRRVSDIINELDMVGILT 346 Query: 787 PASSTGKRE 795 R Sbjct: 347 AKVVNRGRY 355 >3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, alternative splicing, coiled coil, cytoplasm, nucleus, protein transport; 2.61A {Homo sapiens} PDB: 2zme_B Length = 218 Score = 28.7 bits (64), Expect = 5.1 Identities = 6/46 (13%), Positives = 18/46 (39%) Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785 +++ A++ V + + +G+ A + E+ G + Sbjct: 153 EEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHL 198 >3kx2_B PRE-mRNA-splicing factor ATP-dependent RNA helicase PRP43; REC-A domains, OB fold, winged-helix domain, ATP-binding, mRNA processing; HET: ADP; 2.20A {Saccharomyces cerevisiae} Length = 767 Score = 28.6 bits (63), Expect = 6.2 Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 1/49 (2%) Query: 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 + ++ G TGSGK+ I +L ++ P+ Sbjct: 102 FLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMP-HLENTQVACTQPR 149 >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 Score = 28.3 bits (63), Expect = 6.8 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 4/51 (7%) Query: 437 NLGKSIEGKPIIAD----LARMPHLLIAGTTGSGKSVAINTMILSLLYRMT 483 +L S+E K I+ + I G GSGKS T+ Y +T Sbjct: 25 DLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT 75 >2w8a_A Glycine betaine transporter BETP; chemosensor and osmosensor, trimer, membrane, cell membrane, membrane protein; 3.35A {Corynebacterium glutamicum} PDB: 2wit_A Length = 566 Score = 28.4 bits (63), Expect = 6.9 Identities = 29/176 (16%), Positives = 55/176 (31%), Gaps = 14/176 (7%) Query: 22 SKKKMKIVAGLILLCTVFAITLALGTWDVYDPSFSYITLRSPKNFLGYGGAIFADVAIQF 81 S M + A L + V T+++ L + G A ++ Sbjct: 277 SNANMVLAALLAIFVFVVGPTVSILNLLPGSIGN---YLSNFFQMAGRTAMSADGTAGEW 333 Query: 82 FGIASVFFL-------PPPTMWALSLLFDKKIYCFSKRATAWLINILVSATFFASFSPSQ 134 G ++F+ P M+ + + I F L+ VS +F+ F + Sbjct: 334 LGSWTIFYWAWWISWSPFVGMFLARISRGRSIREFIL--GVLLVPAGVSTVWFSIFGGTA 391 Query: 135 SWPIQNGFGGIIGDLIIRLPFLFFESYPRKLGILFFQMILFLAMSWLLIYSSSAIF 190 QNG F + P G + + + L ++ + + SA Sbjct: 392 IVFEQNGESIWGDGAAEEQLFGLLHALP--GGQIMGIIAMILLGTFFITSADSAST 445 >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 Score = 28.2 bits (62), Expect = 7.4 Identities = 6/38 (15%), Positives = 16/38 (42%), Gaps = 3/38 (7%) Query: 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494 ++ G+GK+ + +L + R +++ P Sbjct: 11 TVLDFHPGAGKTRRF---LPQILAECARRRLRTLVLAP 45 >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, transit peptide, disease mutation, nucleotide-binding, ATP-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Length = 349 Score = 28.2 bits (62), Expect = 7.4 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%) Query: 459 IAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495 ++G G+GKS I L R + ++ +DP Sbjct: 79 LSGPPGAGKSTFIEYFGKMLTERGH--KLSVLAVDPS 113 >2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} Length = 135 Score = 28.0 bits (62), Expect = 7.8 Identities = 4/29 (13%), Positives = 12/29 (41%) Query: 757 SISYIQRRLGIGYNRAASIIENMEEKGVI 785 + + +Q + I + + +KG + Sbjct: 53 TPNQLQEGMSISVEECTNRLRMFIQKGFL 81 >3khd_A Pyruvate kinase; malaria, structural genomics, structural genomics consortium, SGC; 2.70A {Plasmodium falciparum 3D7} Length = 520 Score = 28.0 bits (62), Expect = 8.2 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 9/47 (19%) Query: 596 IDEMADLMMVARKDIES---------AVQRLAQMARASGIHVIMATQ 633 I +D +M+AR D+ A + + G +I ATQ Sbjct: 277 ILAESDGIMIARGDLGMEISPEKVFLAQKLMISKCNLQGKPIITATQ 323 >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* Length = 356 Score = 28.0 bits (62), Expect = 8.3 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 23/84 (27%) Query: 394 RVAVIPRRNAIGIELPNDIRETVMLRDLIVSRVFEKNQCDLAINLGKSIEGKPIIADLAR 453 RV + G + + + +L + VF++ ++ Sbjct: 82 RVNAFNQNRGAGAVFRTIPSKVLTMEELGMGEVFKR---------------------VSD 120 Query: 454 MPH--LLIAGTTGSGKSVAINTMI 475 +P +L+ G TGSGKS + M+ Sbjct: 121 VPRGLVLVTGPTGSGKSTTLAAML 144 >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A* Length = 355 Score = 27.9 bits (61), Expect = 8.7 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%) Query: 459 IAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494 I G G GKS AI + + L + ++ +DP Sbjct: 84 ITGVPGVGKSTAIEALGMHL--IERGHRVAVLAVDP 117 >3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, alternative splicing, coiled coil, cytoplasm, nucleus, protein transport; 2.61A {Homo sapiens} PDB: 2zme_A Length = 234 Score = 27.8 bits (62), Expect = 8.8 Identities = 7/30 (23%), Positives = 17/30 (56%) Query: 756 ASISYIQRRLGIGYNRAASIIENMEEKGVI 785 ++S I+ L RA ++E++ ++G+ Sbjct: 169 VTVSEIKASLKWETERARQVLEHLLKEGLA 198 >1sjp_A Chaperonin60, 60 kDa chaperonin 2; chaperone, structural genomics, PSI, protein structure initiative; 3.20A {Mycobacterium tuberculosis} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 504 Score = 27.9 bits (62), Expect = 9.1 Identities = 8/26 (30%), Positives = 11/26 (42%) Query: 766 GIGYNRAASIIENMEEKGVIGPASST 791 G G N + E++ GV P T Sbjct: 430 GHGLNAQTGVYEDLLAAGVADPVKVT 455 >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Length = 604 Score = 27.8 bits (61), Expect = 9.2 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%) Query: 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494 H+L+ G G+GKS+ + LL T + Sbjct: 62 HVLLIGEPGTGKSMLGQ-AMAELLPTETLEDILVFPNPE 99 >3kfb_A Chaperonin; double HOMO-octameric rings, ATP-binding, chaperone, nucleot binding; HET: ANP; 3.20A {Methanococcus maripaludis} PDB: 3los_A 3kfe_A* 3iyf_A* 3kfk_A* Length = 543 Score = 27.7 bits (61), Expect = 9.3 Identities = 8/26 (30%), Positives = 11/26 (42%) Query: 766 GIGYNRAASIIENMEEKGVIGPASST 791 G N +E+M E GV+ P Sbjct: 470 CAGLNVFTGAVEDMCENGVVEPLRVK 495 >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773 Score = 27.7 bits (61), Expect = 9.5 Identities = 6/22 (27%), Positives = 10/22 (45%) Query: 447 IIADLARMPHLLIAGTTGSGKS 468 + ++ G TGSGK+ Sbjct: 102 FLKLYQNNQIMVFVGETGSGKT 123 >3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A* Length = 339 Score = 27.8 bits (61), Expect = 9.8 Identities = 5/19 (26%), Positives = 12/19 (63%) Query: 614 VQRLAQMARASGIHVIMAT 632 L +++ A+G+ ++ AT Sbjct: 92 PAFLREVSEATGLQILCAT 110 >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 Score = 27.6 bits (61), Expect = 10.0 Identities = 7/48 (14%), Positives = 23/48 (47%), Gaps = 4/48 (8%) Query: 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP-KMLELSVYD 503 ++ G+GK+ + + L+ + R +++ P +++ +Y+ Sbjct: 5 TVLDLHPGAGKTRRV---LPQLVREAVKKRLRTVILAPTRVVASEMYE 49 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.137 0.398 Gapped Lambda K H 0.267 0.0478 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 6,866,455 Number of extensions: 330278 Number of successful extensions: 1312 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1296 Number of HSP's successfully gapped: 90 Length of query: 806 Length of database: 5,693,230 Length adjustment: 100 Effective length of query: 706 Effective length of database: 3,268,830 Effective search space: 2307793980 Effective search space used: 2307793980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 61 (27.9 bits)