RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780799|ref|YP_003065212.1| DNA translocase FtsK
[Candidatus Liberibacter asiaticus str. psy62]
(806 letters)
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- binding, cell division, transmembrane,
inner membrane; HET: DNA ATG; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 515 bits (1326), Expect = e-146
Identities = 240/518 (46%), Positives = 331/518 (63%), Gaps = 19/518 (3%)
Query: 296 QSNLINHGTGTFVLPSKEILSTSQSPVNQMTFSPKVMQNNACTLKSVLSDFGIQGEIVNV 355
Q+ L LP +L + V Q ++SP+ ++ + L+ L +FG++ + +V
Sbjct: 57 QAPLFVDTAVEGTLPPLSLLD--PAEVKQKSYSPESLEAMSRLLEIKLKEFGVEVSVDSV 114
Query: 356 RPGPVITLYELEPAPGIKSSRIIGLSDDIARSMSAISARV-AVIPRRNAIGIELPNDIRE 414
PGPVIT +E++PA G+K SRI L+ D+ARS++ IS RV VIP + +GIE+PN+ R+
Sbjct: 115 HPGPVITRFEIQPAAGVKVSRISNLAKDLARSLAVISVRVVEVIPGKTTVGIEIPNEDRQ 174
Query: 415 TVMLRDLIVSRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTM 474
V +++ S +++++ + + LG I G+PII DLA+MPHLL+AGTTGSGKSV +N M
Sbjct: 175 MVRFSEVLSSPEYDEHKSTVPLALGHDIGGRPIITDLAKMPHLLVAGTTGSGKSVGVNAM 234
Query: 475 ILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERY 534
+LS+L++ TP++ RLIMIDPKMLELS+Y+GIP+LL PVVT+ ++A L+W V EME RY
Sbjct: 235 LLSILFKSTPSEARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEMERRY 294
Query: 535 QKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVV 594
+ M+ +GVRN+ GFN KV G + + E +P IVV
Sbjct: 295 RLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRES-------PDDEPPQLSTLPTIVV 347
Query: 595 VIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISF 654
V+DE AD+MM+ K +E + R+AQ ARA+GIH+I+ATQRPSVDVITG IKAN PTRI+F
Sbjct: 348 VVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAF 407
Query: 655 QVSSKIDSRTILGEQGAEQLLGQGDMLYMTGGGRV-QRIHGPFVSDIEVEKVVSHLKTQG 713
QVSSKIDSRTIL + GAEQLLG GDMLY+ G + R+HG FVSD EV +VV K +G
Sbjct: 408 QVSSKIDSRTILDQGGAEQLLGHGDMLYLPPGTGLPIRVHGAFVSDDEVHRVVEAWKLRG 467
Query: 714 EAKYID--------IKDKILLNEEMRFSENSSVADDLYKQAVDIVLRDNKASISYIQRRL 765
YI+ + S S D LY +AV V +ASIS +QR+L
Sbjct: 468 APDYIEDILAGVDEXXXXXXSFDGGDGSGEGSEDDPLYDEAVRFVTESRRASISAVQRKL 527
Query: 766 GIGYNRAASIIENMEEKGVIGPASSTGKREILISSMEE 803
IGYNRAA +IE ME GV+ P ++ G RE++ +
Sbjct: 528 KIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAPAPVR 565
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- binding, cell division, transmembrane,
inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB:
2j5p_A*
Length = 512
Score = 498 bits (1284), Expect = e-141
Identities = 240/497 (48%), Positives = 315/497 (63%), Gaps = 11/497 (2%)
Query: 305 GTFVLPSKEILSTSQSPVNQMTFSPKVMQNNACTLKSVLSDFGIQGEIVNVRPGPVITLY 364
T LPS ++L+ P ++ A +++ L+DF I+ ++VN PGPVIT +
Sbjct: 19 PTTPLPSLDLLT--PPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRF 76
Query: 365 ELEPAPGIKSSRIIGLSDDIARSMSAISARVA-VIPRRNAIGIELPNDIRETVMLRDLIV 423
EL APG+K++RI LS D+ARS+S ++ RV VIP + +G+ELPN R+TV LR+++
Sbjct: 77 ELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLD 136
Query: 424 SRVFEKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMT 483
+ F N L + LGK I G+P++ADLA+MPHLL+AGTTGSG SV +N MILS+LY+
Sbjct: 137 NAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ 196
Query: 484 PAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVR 543
P R IMIDPKMLELSVY+GIP+LLT VVT+ + A L+W V EME RY+ MS +GVR
Sbjct: 197 PEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVR 256
Query: 544 NIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLM 603
N+ G+N K+A+ + D + +H + PYIVV++DE ADLM
Sbjct: 257 NLAGYNEKIAEADRMMRPIPDPYWKPGD------SMDAQHPVLKKEPYIVVLVDEFADLM 310
Query: 604 MVARKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSR 663
M K +E + RLAQ ARA+GIH+++ATQRPSVDVITG IKAN PTRI+F VSSKIDSR
Sbjct: 311 MTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSR 370
Query: 664 TILGEQGAEQLLGQGDMLYMTGG-GRVQRIHGPFVSDIEVEKVVSHLKTQGEAKYID-IK 721
TIL + GAE LLG GDMLY R+HG FV D EV VV K +G +Y+D I
Sbjct: 371 TILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGIT 430
Query: 722 DKILLNEEMRFSENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEE 781
+ + D L+ QAV V KASIS +QR+ IGYNRAA IIE ME
Sbjct: 431 SDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEA 490
Query: 782 KGVIGPASSTGKREILI 798
+G++ G RE+L
Sbjct: 491 QGIVSEQGHNGNREVLA 507
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome
partition, ATP-binding, DNA-binding, winged helix,
bacterial cell division; HET: DNA; 1.4A {Pseudomonas
aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Length = 73
Score = 97.5 bits (243), Expect = 1e-20
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 733 SENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTG 792
S S D LY +AV V +ASIS +QR+L IGYNRAA +IE ME GV+ P ++ G
Sbjct: 2 SGEGSEDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNG 61
Query: 793 KREILISSMEE 803
RE++ +
Sbjct: 62 SREVIAPAPVR 72
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 55.7 bits (134), Expect = 4e-08
Identities = 99/723 (13%), Positives = 206/723 (28%), Gaps = 318/723 (43%)
Query: 196 VPYNMADCLISDESKTQLEDVMASSLLKY---------------LCNMFRVWIGRFLGFA 240
VP +QL++ L + L G+FLG+
Sbjct: 22 VPTASFFIA------SQLQEQFNKILPEPTEGFAADDEPTTPAELV-------GKFLGY- 67
Query: 241 FFISFVKKCLGDSNISVDDYRKKIEPTLDVSFHDAI----DINSITEYQLNADIVQNISQ 296
V + S + D + L F + DI+++ +L +
Sbjct: 68 -----VSSLVEPSKVGQFDQVLNL--CLT-EFENCYLEGNDIHALA-AKLLQE------- 111
Query: 297 SNLINHGTGTFVLPSKEILST-------SQSPVNQMTFSPKVMQNNACTLKSVLSD---- 345
T ++ +KE++ ++ P K N+A ++V
Sbjct: 112 -------NDTTLVKTKELIKNYITARIMAKRP------FDK-KSNSA-LFRAVGEGNAQL 156
Query: 346 ---FGIQG----------EIVNV-RP--GPVI-----TLYELEPAP---------GIKSS 375
FG QG ++ G +I TL EL G+
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN-- 214
Query: 376 RIIG-LSDDIARSMSA--ISARVAVIPRRNAIGIELPNDIRETVMLRDLIVSRVFEKNQC 432
I+ L + +S ++ P IG+ + ++ +++
Sbjct: 215 -ILEWLENPSNTPDKDYLLSIPISC-P---LIGV--------IQLAHYVVTAKL------ 255
Query: 433 DLAINLGKSIEGKPIIADLARMPHLLIAGTTG-S-GKSVAINTMILSLLYRMTPAQCRLI 490
LG + P +L + G TG S G A I A+
Sbjct: 256 -----LGFT----P--GELRS----YLKGATGHSQGLVTA--VAI---------AETD-- 287
Query: 491 MIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNL 550
+ S + + +KA+TVL + IGVR
Sbjct: 288 --SWE----SFFV-----------SVRKAITVLFF--------------IGVRC------ 310
Query: 551 KVAQYHNTGKKFNRT------VQTGFDRKTGEAIYETEHFDFQHMP-YIVVVIDEMADLM 603
+ + T ++ + E + P ++ + ++L
Sbjct: 311 -----YEA---YPNTSLPPSILEDSLEN--NEGV-----------PSPMLSI----SNL- 344
Query: 604 MVARKDIESAVQRL-AQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDS 662
++ ++ V + + + + + + ++ V++G P + S ++
Sbjct: 345 --TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL-VVSG------PPQ-SLY---GLNL 391
Query: 663 RTILGEQGAEQLLGQGDMLYMTGGGRV---QR----------IHGPFVSDIEVEKVVSHL 709
L + A L Q R+ +R + PF S + + +
Sbjct: 392 T--LRKAKAPSGLDQS---------RIPFSERKLKFSNRFLPVASPFHSHL-LVPASDLI 439
Query: 710 KTQGEAKYIDIKDKILL--------NEEMR-FSENSSVADDLYKQAVDIVLRDN----KA 756
+ K + ++R S + +++ + VD ++R
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS--ISERI----VDCIIRLPVKWETT 493
Query: 757 ---SISYIQRRL--------GIG--YNRAASIIENMEEKGVIGPASSTGKREILISSMEE 803
++I L G+G +R N + GV R I+ +++
Sbjct: 494 TQFKATHI---LDFGPGGASGLGVLTHR------NKDGTGV---------RVIVAGTLDI 535
Query: 804 CHE 806
+
Sbjct: 536 NPD 538
Score = 53.8 bits (129), Expect = 1e-07
Identities = 83/500 (16%), Positives = 140/500 (28%), Gaps = 237/500 (47%)
Query: 183 IYSSSAIF--QGKRRVPYNMADCLISDESKTQLEDVMASSLLKYLCNMFRVWIGRFLGFA 240
+ AIF QG N D +E L+ L + V +G
Sbjct: 156 LV---AIFGGQG------NTDDYF--EE-------------LRDLYQTYHVLVGDL---- 187
Query: 241 FFISFVKKCLGDSNISVDDYRKKIEPTLDVSFHDAIDINSITEYQLNADIVQNISQSNLI 300
I F + L S + DA + + +I++ +
Sbjct: 188 --IKFSAETL--SELIRTT-------------LDAEKV-----FTQGLNILE------WL 219
Query: 301 NHGTGTFVLPSKEILSTSQSPVN-------QM-----TFSPKVMQNNACTLKSVLSDFGI 348
+ + T P K+ L + P++ Q+ T K++ L+S L G
Sbjct: 220 ENPSNT---PDKDYLLSI--PISCPLIGVIQLAHYVVTA--KLLGFTPGELRSYLK--GA 270
Query: 349 ----QGEIVNVRPGPVI-------TLYELEPAPGIKSSRI---IGLSDDIARSMSAISAR 394
QG + V I + + K+ + IG+ R A
Sbjct: 271 TGHSQGLVTAV----AIAETDSWESFFVS----VRKAITVLFFIGV-----RCYEAY--- 314
Query: 395 VAVIPRRNAIGIELPNDIRE----------TVML--RDLIVSRVFEK-----NQC----- 432
P + LP I E + ML +L +V + N
Sbjct: 315 ----PNTS-----LPPSILEDSLENNEGVPSPMLSISNLTQEQV-QDYVNKTNSHLPAGK 364
Query: 433 DLAINL----------G--KSIEG---------KPIIADLARMPHLLIAGTTGSGKSVAI 471
+ I+L G +S+ G P D +R+P S + +
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF--------SERKLKF 416
Query: 472 NTMIL--------SLLYRMTPA-----QCRLIMIDPKMLELSVYD---G----------I 505
+ L LL + + + K +++ VYD G
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 506 PNLLTPVVTNPQKAVTVLKWLVCEMEERYQKM-------------SKIGV---RNIDGFN 549
++ ++ P +KW E + S +GV RN DG
Sbjct: 477 ERIVDCIIRLP------VKW------ETTTQFKATHILDFGPGGASGLGVLTHRNKDG-- 522
Query: 550 LKVAQYHNTGKKFNRTVQTG 569
TG R + G
Sbjct: 523 --------TGV---RVIVAG 531
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 46.8 bits (110), Expect = 2e-05
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 442 IEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495
+ G P+ D HLL+ G TG+GKSV + + + L R R++++DP
Sbjct: 42 VAGVPMPRDAEPR-HLLVNGATGTGKSVLLRELAYTGLLR----GDRMVIVDPN 90
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP- binding,
ligase, magnesium, nucleotide-binding; 1.85A
{Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A*
3fpa_A*
Length = 251
Score = 36.3 bits (83), Expect = 0.030
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 441 SIEGKPIIADLARMPHLLIAGT-TGSGKSVAINTMILSLLYR-------MTPAQCRLIMI 492
++G + + M L++ GT TG GK+V + + S + P Q
Sbjct: 13 GLQGTENLYFQSHMTILVVTGTGTGVGKTV-VCAALASAARQAGIDVAVCKPVQTGTARG 71
Query: 493 DPKMLELSVYDGIPNLLTPVV 513
D + E+ G+ L
Sbjct: 72 DDDLAEVGRLAGVTQLAGLAR 92
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal
domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Length = 261
Score = 34.0 bits (77), Expect = 0.12
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 446 PIIADLARMPH--LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYD 503
+ +L +L+ G TGSGKS I +MI +I + V+
Sbjct: 15 DKVLELCHRKMGLILVTGPTGSGKSTTIASMI-----DYINQTKSYHIITIEDPIEYVFK 69
Query: 504 GI 505
Sbjct: 70 HK 71
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport
protein, SD methionine, membrane protein; HET: CM5 1PE;
2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Length = 509
Score = 33.9 bits (77), Expect = 0.12
Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 3/148 (2%)
Query: 49 DVYDPSFSYITLRSPKNFLGYGGAIFADVAIQFFGIASVFFLPPPTMWALSLLFDKKIYC 108
V D + + + LG + + FGI L + LL +
Sbjct: 195 TVVDNFYLVALILAMGTSLGLATPLVTECIQYLFGIPHTLQLDAIIISCWILLNAICVAF 254
Query: 109 FSKRATAWLIN---ILVSATFFASFSPSQSWPIQNGFGGIIGDLIIRLPFLFFESYPRKL 165
++ + L F + I N F +G L++ +P + F + P
Sbjct: 255 GLQKGVKIASDVRTYLSFLMLGWVFIVGGASFIVNYFTDSVGTLLMYMPRMLFYTDPIGK 314
Query: 166 GILFFQMILFLAMSWLLIYSSSAIFQGK 193
G +F W++ +IF +
Sbjct: 315 GGFPQAWTVFYWAWWVIYAIQMSIFLAR 342
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG
ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1
c.37.1.20
Length = 340
Score = 33.9 bits (76), Expect = 0.17
Identities = 22/176 (12%), Positives = 59/176 (33%), Gaps = 11/176 (6%)
Query: 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPV 512
++PHLL G G+GK+ + I++L + ++++ + D + N +
Sbjct: 45 KLPHLLFYGPPGTGKT----STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDF 100
Query: 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNI---DGFNLKVAQYHNTGKKFNRTV--- 566
+ Q K ++ + + ++ +R + N + N K +
Sbjct: 101 ASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ 160
Query: 567 -QTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMA 621
+ + E + + + + L+ ++ D+ + L
Sbjct: 161 CTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCK 216
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.4 bits (75), Expect = 0.19
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 606 ARKDIESAVQRLAQMARASGIHVIMAT----QRPSVDVI 640
A+KD+E QR ++ + I+ +A Q+P D+I
Sbjct: 116 AKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADII 154
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 31.8 bits (71), Expect = 0.63
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 457 LLIAGTTGSGKSVAINTMILSLLYRMTPA-----QCRLIMIDPKMLELSVYDGIPNLLTP 511
L++ G +G GKS IN++ L+ LY + + ++ + + G+ LLT
Sbjct: 34 LMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLI-KEGGVQLLLTI 92
Query: 512 VVT 514
V T
Sbjct: 93 VDT 95
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum
spherical virus}
Length = 165
Score = 31.5 bits (71), Expect = 0.71
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 744 KQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785
+ + +L D + S IQ+RLG+ + RA ++I +E++G +
Sbjct: 13 LRDILALLADGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRV 54
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery;
1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1
PDB: 1pky_A 1e0u_A
Length = 470
Score = 31.3 bits (71), Expect = 0.77
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 14/65 (21%)
Query: 596 IDEMADLMMVARKDIESAV---------QRLAQMARASGIHVIMATQRPSVDVITGTIKA 646
I E +D +MVAR D+ + + + + + VI AT ++ IK
Sbjct: 233 ILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATM-----MLDSMIKN 287
Query: 647 NFPTR 651
PT
Sbjct: 288 PRPTD 292
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 31.4 bits (70), Expect = 0.87
Identities = 26/180 (14%), Positives = 57/180 (31%), Gaps = 11/180 (6%)
Query: 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPV 512
MPHLL AG G GK+ T L+L + R ++ + + I +
Sbjct: 45 SMPHLLFAGPPGVGKT----TAALALARELFGENWRHNFLELNASDERGINVIREKVKEF 100
Query: 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNI---DGFNLKVAQYHNTGKKFNRTVQTG 569
K + + + + ++ +R N++ N K +Q+
Sbjct: 101 ARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160
Query: 570 FDRKTGEAIYETEHFDFQHM----PYIVVVIDEMADLMMVARKDIESAVQRLAQMARASG 625
+ + + + + + + ++ +A D+ A+ L A
Sbjct: 161 CAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDK 220
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG
ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1
c.37.1.20
Length = 323
Score = 31.1 bits (69), Expect = 1.0
Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 4/178 (2%)
Query: 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPV 512
MPH++I+G G GK+ +++ + LL R + V + I +
Sbjct: 41 NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKK 100
Query: 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGF-- 570
+ P ++ + + + + + + A N K +Q+
Sbjct: 101 LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAI 160
Query: 571 --DRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGI 626
K + + + D + ++ A D+ A+ L G+
Sbjct: 161 LRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGL 218
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 31.1 bits (69), Expect = 1.1
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 10/93 (10%)
Query: 457 LLIAGTTGSGKSVAINTMILS-LLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVT- 514
+L G TG GKS ++T+ + + + +L + LT V T
Sbjct: 45 ILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDL-QESNVRLKLTIVSTV 103
Query: 515 -------NPQKAVTVLKWLVCEMEERYQKMSKI 540
+++++ + E Q+ KI
Sbjct: 104 GFGDQINKEDSYKPIVEFIDAQFEAYLQEELKI 136
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 31.1 bits (70), Expect = 1.1
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 437 NLGKSIEGKPIIAD----LARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMI 492
+G+ +GK I+ +A+ ++ G G+GK+ +N IL+ T L
Sbjct: 26 QIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLN--ILNAYEPATSGTVNLFGK 83
Query: 493 DP 494
P
Sbjct: 84 MP 85
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 30.8 bits (68), Expect = 1.2
Identities = 21/197 (10%), Positives = 53/197 (26%), Gaps = 10/197 (5%)
Query: 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPV 512
+ G GSGK++ I +I +L + A +I E G +
Sbjct: 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNT 96
Query: 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDR 572
++ + ++ + ++ F+
Sbjct: 97 GKECHLDAHLVGHALEDLNLDEIDL----------LFIENVGNLICPADFDLGTHKRIVV 146
Query: 573 KTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMAT 632
+ +T M +++ DL DI+ ++ + + ++
Sbjct: 147 ISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLK 206
Query: 633 QRPSVDVITGTIKANFP 649
D + I+ +
Sbjct: 207 TMEGFDKVLEFIEKSVK 223
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein,
structural genomics, PSI- 2, protein structure
initiative; 3.00A {Corynebacterium diphtheriae}
Length = 583
Score = 30.5 bits (68), Expect = 1.5
Identities = 7/87 (8%), Positives = 24/87 (27%), Gaps = 1/87 (1%)
Query: 700 IEVEKVVSHLKTQGEAKYIDIKDKILLNEEMRFSENSSVADDLYKQAVDIVLRDNK-ASI 758
+++H + + S A + L + +
Sbjct: 474 AGAPLIIAHDGVWLLGNACREILRKVEPSPFSPVRYLSTDQAELTNAAMLWLSEVGDLAT 533
Query: 759 SYIQRRLGIGYNRAASIIENMEEKGVI 785
S + G+ A + ++ + ++ +
Sbjct: 534 SDLMAMCGVSRGTAKACVDGLVDEERV 560
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 30.7 bits (68), Expect = 1.5
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQC------RLIMIDPKMLELSVYDGIPNLLT 510
L++ G +G GKS IN++ L+ LY R + I+ +E+ G+ LT
Sbjct: 40 LMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEI-EERGVKLRLT 98
Query: 511 PVVT 514
V T
Sbjct: 99 VVDT 102
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcription; HET: ATP; 2.95A {Saccharomyces
cerevisiae}
Length = 460
Score = 30.4 bits (68), Expect = 1.6
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 436 INLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495
NL +E + P ++I G + +GK+ +++ + S + Q I +DP+
Sbjct: 122 YNLHFMLEKIRMSN--FEGPRVVIVGGSQTGKT-SLSRTLCSYALKFNAYQPLYINLDPQ 178
Query: 496 MLELSV 501
+V
Sbjct: 179 QPIFTV 184
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase,
allosteric enzyme, ATP-binding, glycolysis, magnesium,
metal-binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A
3hqo_K* 3hqp_A* 3hqq_A* 3ktx_A* 3e0w_A 3e0v_A
Length = 499
Score = 30.2 bits (68), Expect = 1.7
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 596 IDEMADLMMVARKDIE---------SAVQRLAQMARASGIHVIMATQ 633
I E +D +MVAR D+ A + L +G VI ATQ
Sbjct: 252 IIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQ 298
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 1.70A {Thermus thermophilus HB8} PDB: 2d2f_A*
Length = 250
Score = 30.3 bits (68), Expect = 1.9
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 437 NLGKSIEGKPIIADL----ARMPHLLIAGTTGSGKSVAINTMILSLLYRMT 483
+L SI+G+ I+ + + + G G+GKS + Y +
Sbjct: 8 DLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE 58
>2ex3_B Protein GP3, DNA terminal protein; DNA polymerase: protein primer
complex, transferase/replication complex; HET: DNA;
3.00A {Bacillus phage PHI29} SCOP: a.263.1.1
Length = 230
Score = 30.1 bits (67), Expect = 2.0
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 20/91 (21%)
Query: 385 ARSMSAISARVAVIPRRNAIGIELPND-----IRETVMLRDLIVS-------RVFEKNQC 432
+ I R+A+ + GI P+D +R LR L S + +EK
Sbjct: 85 GKPQGTIEQRIAMTSPAHVTGINRPHDFDFSKVRSYSRLRTLEESMEMRTDPQYYEKKMI 144
Query: 433 DLAINLGKSIEGK--------PIIADLARMP 455
L +N KS+EG +I +L ++P
Sbjct: 145 QLQLNFIKSVEGSFNSFDAADELIEELKKIP 175
>3enu_A Nitrollin, putative uncharacterized protein; betagamma crystallin,
structural protein; 1.86A {Nitrosospira multiformis}
PDB: 3ent_A
Length = 114
Score = 30.0 bits (67), Expect = 2.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 677 QGDMLYMTGGGRVQRIHGPFVSDIE 701
QGD L+++G + R+ GPF D E
Sbjct: 34 QGDSLFLSGPATLPRLIGPFGYDWE 58
>3cmn_A Putative hydrolase; PSI-II, NYSGXRC, apoenzyme, helical protein,
10492M, structural genomics, protein structure
initiative; 2.25A {Chloroflexus aurantiacus j-10-fl}
SCOP: d.92.1.16
Length = 372
Score = 29.9 bits (67), Expect = 2.0
Identities = 35/212 (16%), Positives = 76/212 (35%), Gaps = 21/212 (9%)
Query: 374 SSRIIGLSDDIARSMSAISARVAVIP---RRNAIGIELP-NDIRETVMLRDLIVSRVFEK 429
+ R++G D S A + + R + L D R + L ++ + FE
Sbjct: 135 AQRVLGQYDLSLLSAEATGGSLYFVEPNIARVQQQLGLSDEDFRLWITLHEMTHAFEFEA 194
Query: 430 NQCDLAINLGKSIE--GKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQC 487
+ + +E + + + L+ + + + + +TP Q
Sbjct: 195 YP-WVRTYFRELLEQNFALVSGQMLSSGNSLVDMLMRLLQGIGSGQHWIETV--LTPEQ- 250
Query: 488 RLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIG--VRNI 545
R + + L +S+ +G N + V + + ++ +R ++ + + V +
Sbjct: 251 RAVFDRIQAL-MSLIEGYGNHVMNAVGRRL--LPSFNQIEQQIAQRQRQRTMLDQMVFRL 307
Query: 546 DGFNLKVAQYHNTGKKFNRTV-----QTGFDR 572
G +LK+AQY G+ F V R
Sbjct: 308 TGLDLKLAQY-QQGEAFVNAVVAARGIQFASR 338
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 29.8 bits (65), Expect = 2.3
Identities = 20/175 (11%), Positives = 56/175 (32%), Gaps = 14/175 (8%)
Query: 454 MPHLL-IAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPV 512
M +L I GT+ SGK+ T+I ++ + R + + + +
Sbjct: 1 MSLILSIVGTSDSGKT----TLITRMMPILRERGLR-VAVVKRHAHGDFEIDKEGKDSWK 55
Query: 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDR 572
+ + +++S+ ++D + ++ + +
Sbjct: 56 ---IYNSGADVVIASPVKLAFIRRVSEEEGNDLDWIYERYLSDYDLVITEGFSK---AGK 109
Query: 573 KTGEAIYETEHFDFQHMPYIVVVI--DEMADLMMVARKDIESAVQRLAQMARASG 625
+ + E + I+ V+ + + R ++E + + + R G
Sbjct: 110 DRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEVERIAEFILSLLREGG 164
>2fna_A Conserved hypothetical protein; 13814777, structural genomics,
joint center for structural genomics, JCSG; HET: MSE
ADP; 2.00A {Sulfolobus solfataricus P2} SCOP: a.4.5.11
c.37.1.20
Length = 357
Score = 29.8 bits (65), Expect = 2.3
Identities = 38/340 (11%), Positives = 95/340 (27%), Gaps = 35/340 (10%)
Query: 452 ARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTP 511
R P L+ G +GKS I I L R
Sbjct: 28 LRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKF--------------------- 66
Query: 512 VVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFD 571
++ K + E+++ K+ K + N
Sbjct: 67 ----EERNYISYKDFLLELQKEINKLVKRLPSLLKAL----KNIQGIVIMGNEIKFNWNR 118
Query: 572 RKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMA 631
+ E F+ +++V+DE +L+ + ++ A+ + + +
Sbjct: 119 KDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGS 178
Query: 632 TQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQGAEQLLGQGDMLYMTGGGRVQR 691
D + + +F + + + D+ + ++
Sbjct: 179 EMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEK 238
Query: 692 IHG--PFVSDIEVEKVVSHLKTQGEAKYIDIKDKILLNEEMRFSENSSVADDLYKQAVDI 749
I G +++ + + + ++ K++L E F +A Y +
Sbjct: 239 IGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLNIMRT 298
Query: 750 VLRDNKAS----ISYIQRRLGIGYNRAASIIENMEEKGVI 785
+ + K S ++ + I + + + + + I
Sbjct: 299 LSKCGKWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWI 338
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix
turn helix motif, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.60.2.7
Length = 98
Score = 29.8 bits (67), Expect = 2.5
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 733 SENSSVADDLYKQAVDIVLRD-NKASISYIQRRLGIGYNRAASIIENMEEKG 783
++ +L +L N+ S ++ IG +A I+ E G
Sbjct: 13 CWELQISPELLAHGRQKILDLLNEGSARDLRSLQRIGPKKAQLIVGWRELHG 64
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural
genomics, structural genomics consortium, SGC,
activator, ATP-binding, DNA-binding; HET: ADP; 2.80A
{Homo sapiens}
Length = 235
Score = 29.5 bits (66), Expect = 3.0
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 447 IIADLARMPHLLIAGTTGSGKSVAINTMIL-SLLYRMTPAQCRLIMIDPK 495
I+ +++ ++I G TG GK+ + IL + A+C +++ P+
Sbjct: 69 ILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPR 118
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 29.3 bits (65), Expect = 3.2
Identities = 24/189 (12%), Positives = 54/189 (28%), Gaps = 30/189 (15%)
Query: 448 IADLARMPHLLIAGTTGSGKSVAINTMILS--LLYRMTPAQCRLIMIDPKMLELSVYDGI 505
AD P +L+AG +GK+ I ++ R+ P
Sbjct: 59 DADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTT----------------- 101
Query: 506 PNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRT 565
+ V+ + LV + E+ ++K++ G + + + +
Sbjct: 102 -DCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFG-NTFLNRFMCAQLPNQVLESISII 159
Query: 566 VQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMV----ARKDIESAVQRLAQMA 621
G + + F + E DL+++ + +I
Sbjct: 160 DTPGILSGAKQRVSRGYDFPAVLRWFA-----ERVDLIILLFDAHKLEISDEFSEAIGAL 214
Query: 622 RASGIHVIM 630
R + +
Sbjct: 215 RGHEDKIRV 223
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 29.3 bits (65), Expect = 3.2
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 444 GKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494
G+ L + ++ GSGK+ I + ++ + R ++ P
Sbjct: 11 GRGSPNMLRKRQMTVLDLHPGSGKTRKI---LPQIIKDAIQQRLRTAVLAP 58
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, cell cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A*
Length = 301
Score = 29.4 bits (65), Expect = 3.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 457 LLIAGTTGSGKSVAINTMILSLLYRMTP 484
L++ G +G GKS IN++ L+ LY
Sbjct: 21 LMVVGESGLGKSTLINSLFLTDLYPERV 48
>2r44_A Uncharacterized protein; YP_676785.1, putative ATPase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 29.3 bits (64), Expect = 3.3
Identities = 24/249 (9%), Positives = 59/249 (23%), Gaps = 12/249 (4%)
Query: 437 NLGKSIEGKP------IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLI 490
+GK + G+ +I H+L+ G G K++++NT+ ++ Q
Sbjct: 24 EVGKVVVGQKYMINRLLIGICTGG-HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPD 82
Query: 491 MIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVL----KWLVCEMEERYQKMSKIGVRNID 546
++ ++ +Y+ + + + M + V D
Sbjct: 83 LLPSDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGD 142
Query: 547 GFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVA 606
+ N Q G + ++ M + +
Sbjct: 143 T-TYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMN 201
Query: 607 RKDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTIL 666
+ + + I + A +
Sbjct: 202 FNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGA 261
Query: 667 GEQGAEQLL 675
+ A L
Sbjct: 262 STRAAINLN 270
>3iey_A TRNA-splicing endonuclease; protein heterodimer, endonuclease,
hydrolase, nuclease, tRNA processing, hydrolase/RNA
binding protein complex; 2.11A {Nanoarchaeum equitans}
Length = 154
Score = 29.1 bits (65), Expect = 4.0
Identities = 8/71 (11%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 535 QKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHF-------DFQ 587
++ K + + F ++ Y K T+ T +Y+ + +
Sbjct: 43 EEFLKKCLTYDERFLIRYKAYKELRDK-GYTLGTALKFGADFRVYDIGVIPKKGKRSERE 101
Query: 588 HMPYIVVVIDE 598
H +++ + +
Sbjct: 102 HSKWVLYPVSK 112
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 512
Score = 28.9 bits (64), Expect = 4.7
Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 766 GIGYNRAASIIENMEEKGVIGPASSTGKREILISSME 802
G+ +++M E GV+ K + +
Sbjct: 463 GLDIEAEVPAVKDMLEAGVLDTYLG--KYWAIKLATN 497
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 28.8 bits (63), Expect = 4.8
Identities = 20/172 (11%), Positives = 48/172 (27%), Gaps = 3/172 (1%)
Query: 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMI-DPKMLELSVYDGIPNLLTP 511
+PHLL +G G+GK+ + L + D + +++ + T
Sbjct: 37 NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96
Query: 512 VVTNPQKAVTVLKWLVCEMEERYQ--KMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTG 569
+ + L + + + F L +
Sbjct: 97 PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156
Query: 570 FDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMA 621
+ + + + + + D + L+ ++ D A+ L A
Sbjct: 157 RFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAA 208
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 28.9 bits (63), Expect = 4.9
Identities = 37/369 (10%), Positives = 106/369 (28%), Gaps = 40/369 (10%)
Query: 428 EKNQCDLAINLGKSIEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQC 487
E +A L + + ++ I G TG+GK+ + +LS L++ +
Sbjct: 26 EDQIRKIASILAPLYREE-------KPNNIFIYGLTGTGKTAVVK-FVLSKLHKKFLGKF 77
Query: 488 RLIMIDPKMLELSVYDGIPNLLTPVVTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDG 547
+ + I+ + ++ L + V P +++ + ++ S++ + +
Sbjct: 78 KHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEI 137
Query: 548 FNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVAR 607
+ + +Y+ + + + I D+ V
Sbjct: 138 DA-------------------FVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178
Query: 608 KDIESAVQRLAQMARASGIHVIMATQRPSVDVITGTIKANFPTRISFQVSSKIDSRTILG 667
D + + + P + ++
Sbjct: 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDA 238
Query: 668 EQGAEQLLGQGDMLYMTGGGRVQRIHGPFVSDIEVEKVVSHLKTQGEAKYIDIKDKIL-L 726
+ + L G++ +V+ + V + E ++ K ++ +
Sbjct: 239 RRALDLLRVSGEIAERMKDTKVKEEY---VYMAKEEIERDRVRDIILTLPFHSKLVLMAV 295
Query: 727 NEEMRFSENSSVADDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIG 786
S +Y+ ++I + +++ R + II ++ G++
Sbjct: 296 VSISSEENVVSTTGAVYETYLNICKKLGVEAVT---------QRRVSDIINELDMVGILT 346
Query: 787 PASSTGKRE 795
R
Sbjct: 347 AKVVNRGRY 355
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS,
alternative splicing, coiled coil, cytoplasm, nucleus,
protein transport; 2.61A {Homo sapiens} PDB: 2zme_B
Length = 218
Score = 28.7 bits (64), Expect = 5.1
Identities = 6/46 (13%), Positives = 18/46 (39%)
Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785
+++ A++ V + + +G+ A + E+ G +
Sbjct: 153 EEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHL 198
>3kx2_B PRE-mRNA-splicing factor ATP-dependent RNA helicase PRP43; REC-A
domains, OB fold, winged-helix domain, ATP-binding, mRNA
processing; HET: ADP; 2.20A {Saccharomyces cerevisiae}
Length = 767
Score = 28.6 bits (63), Expect = 6.2
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495
+ ++ G TGSGK+ I +L ++ P+
Sbjct: 102 FLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMP-HLENTQVACTQPR 149
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 28.3 bits (63), Expect = 6.8
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 437 NLGKSIEGKPIIAD----LARMPHLLIAGTTGSGKSVAINTMILSLLYRMT 483
+L S+E K I+ + I G GSGKS T+ Y +T
Sbjct: 25 DLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT 75
>2w8a_A Glycine betaine transporter BETP; chemosensor and osmosensor,
trimer, membrane, cell membrane, membrane protein; 3.35A
{Corynebacterium glutamicum} PDB: 2wit_A
Length = 566
Score = 28.4 bits (63), Expect = 6.9
Identities = 29/176 (16%), Positives = 55/176 (31%), Gaps = 14/176 (7%)
Query: 22 SKKKMKIVAGLILLCTVFAITLALGTWDVYDPSFSYITLRSPKNFLGYGGAIFADVAIQF 81
S M + A L + V T+++ L + G A ++
Sbjct: 277 SNANMVLAALLAIFVFVVGPTVSILNLLPGSIGN---YLSNFFQMAGRTAMSADGTAGEW 333
Query: 82 FGIASVFFL-------PPPTMWALSLLFDKKIYCFSKRATAWLINILVSATFFASFSPSQ 134
G ++F+ P M+ + + I F L+ VS +F+ F +
Sbjct: 334 LGSWTIFYWAWWISWSPFVGMFLARISRGRSIREFIL--GVLLVPAGVSTVWFSIFGGTA 391
Query: 135 SWPIQNGFGGIIGDLIIRLPFLFFESYPRKLGILFFQMILFLAMSWLLIYSSSAIF 190
QNG F + P G + + + L ++ + + SA
Sbjct: 392 IVFEQNGESIWGDGAAEEQLFGLLHALP--GGQIMGIIAMILLGTFFITSADSAST 445
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 28.2 bits (62), Expect = 7.4
Identities = 6/38 (15%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494
++ G+GK+ + +L + R +++ P
Sbjct: 11 TVLDFHPGAGKTRRF---LPQILAECARRRLRTLVLAP 45
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, transit peptide, disease mutation,
nucleotide-binding, ATP-binding; HET: GDP 2PE; 2.64A
{Homo sapiens}
Length = 349
Score = 28.2 bits (62), Expect = 7.4
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 459 IAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495
++G G+GKS I L R + ++ +DP
Sbjct: 79 LSGPPGAGKSTFIEYFGKMLTERGH--KLSVLAVDPS 113
>2v79_A DNA replication protein DNAD; primosome, DNA remodelling,
oligomerization domain, DNA-binding protein; HET: DNA;
2.00A {Bacillus subtilis}
Length = 135
Score = 28.0 bits (62), Expect = 7.8
Identities = 4/29 (13%), Positives = 12/29 (41%)
Query: 757 SISYIQRRLGIGYNRAASIIENMEEKGVI 785
+ + +Q + I + + +KG +
Sbjct: 53 TPNQLQEGMSISVEECTNRLRMFIQKGFL 81
>3khd_A Pyruvate kinase; malaria, structural genomics, structural genomics
consortium, SGC; 2.70A {Plasmodium falciparum 3D7}
Length = 520
Score = 28.0 bits (62), Expect = 8.2
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 9/47 (19%)
Query: 596 IDEMADLMMVARKDIES---------AVQRLAQMARASGIHVIMATQ 633
I +D +M+AR D+ A + + G +I ATQ
Sbjct: 277 ILAESDGIMIARGDLGMEISPEKVFLAQKLMISKCNLQGKPIITATQ 323
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion
ATPase, ATP-binding, FIMB nucleotide-binding, transport;
HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB:
3jvu_A*
Length = 356
Score = 28.0 bits (62), Expect = 8.3
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 23/84 (27%)
Query: 394 RVAVIPRRNAIGIELPNDIRETVMLRDLIVSRVFEKNQCDLAINLGKSIEGKPIIADLAR 453
RV + G + + + +L + VF++ ++
Sbjct: 82 RVNAFNQNRGAGAVFRTIPSKVLTMEELGMGEVFKR---------------------VSD 120
Query: 454 MPH--LLIAGTTGSGKSVAINTMI 475
+P +L+ G TGSGKS + M+
Sbjct: 121 VPRGLVLVTGPTGSGKSTTLAAML 144
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A*
Length = 355
Score = 27.9 bits (61), Expect = 8.7
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 459 IAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494
I G G GKS AI + + L + ++ +DP
Sbjct: 84 ITGVPGVGKSTAIEALGMHL--IERGHRVAVLAVDP 117
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, alternative
splicing, coiled coil, cytoplasm, nucleus, protein
transport; 2.61A {Homo sapiens} PDB: 2zme_A
Length = 234
Score = 27.8 bits (62), Expect = 8.8
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 756 ASISYIQRRLGIGYNRAASIIENMEEKGVI 785
++S I+ L RA ++E++ ++G+
Sbjct: 169 VTVSEIKASLKWETERARQVLEHLLKEGLA 198
>1sjp_A Chaperonin60, 60 kDa chaperonin 2; chaperone, structural genomics,
PSI, protein structure initiative; 3.20A {Mycobacterium
tuberculosis} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Length = 504
Score = 27.9 bits (62), Expect = 9.1
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 766 GIGYNRAASIIENMEEKGVIGPASST 791
G G N + E++ GV P T
Sbjct: 430 GHGLNAQTGVYEDLLAAGVADPVKVT 455
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 27.8 bits (61), Expect = 9.2
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494
H+L+ G G+GKS+ + LL T +
Sbjct: 62 HVLLIGEPGTGKSMLGQ-AMAELLPTETLEDILVFPNPE 99
>3kfb_A Chaperonin; double HOMO-octameric rings, ATP-binding, chaperone,
nucleot binding; HET: ANP; 3.20A {Methanococcus
maripaludis} PDB: 3los_A 3kfe_A* 3iyf_A* 3kfk_A*
Length = 543
Score = 27.7 bits (61), Expect = 9.3
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 766 GIGYNRAASIIENMEEKGVIGPASST 791
G N +E+M E GV+ P
Sbjct: 470 CAGLNVFTGAVEDMCENGVVEPLRVK 495
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 27.7 bits (61), Expect = 9.5
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 447 IIADLARMPHLLIAGTTGSGKS 468
+ ++ G TGSGK+
Sbjct: 102 FLKLYQNNQIMVFVGETGSGKT 123
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta
barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB:
2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A*
3fdk_A* 3htw_A*
Length = 339
Score = 27.8 bits (61), Expect = 9.8
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 614 VQRLAQMARASGIHVIMAT 632
L +++ A+G+ ++ AT
Sbjct: 92 PAFLREVSEATGLQILCAT 110
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 27.6 bits (61), Expect = 10.0
Identities = 7/48 (14%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP-KMLELSVYD 503
++ G+GK+ + + L+ + R +++ P +++ +Y+
Sbjct: 5 TVLDLHPGAGKTRRV---LPQLVREAVKKRLRTVILAPTRVVASEMYE 49
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.137 0.398
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 6,866,455
Number of extensions: 330278
Number of successful extensions: 1312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1296
Number of HSP's successfully gapped: 90
Length of query: 806
Length of database: 5,693,230
Length adjustment: 100
Effective length of query: 706
Effective length of database: 3,268,830
Effective search space: 2307793980
Effective search space used: 2307793980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.9 bits)