RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780799|ref|YP_003065212.1| DNA translocase FtsK
[Candidatus Liberibacter asiaticus str. psy62]
(806 letters)
>d2ve8a1 a.4.5.67 (A:745-811) DNA translocase FtsK {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 67
Score = 100 bits (251), Expect = 5e-22
Identities = 30/64 (46%), Positives = 41/64 (64%)
Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGKREILIS 799
D LY +AV V +ASIS +QR+L IGYNRAA +IE ME GV+ P ++ G RE++
Sbjct: 3 DPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIAP 62
Query: 800 SMEE 803
+
Sbjct: 63 APVR 66
>d2j5pa1 a.4.5.67 (A:1261-1329) DNA translocase FtsK {Escherichia
coli [TaxId: 562]}
Length = 69
Score = 95.1 bits (237), Expect = 2e-20
Identities = 30/59 (50%), Positives = 37/59 (62%)
Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGKREILI 798
D L+ QAV V KASIS +QR+ IGYNRAA IIE ME +G++ G RE+L
Sbjct: 6 DPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLA 64
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 46.5 bits (109), Expect = 8e-06
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 442 IEGKPIIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPK 495
+ G P+ D HLL+ G TG+GKSV + + + L R R++++DP
Sbjct: 39 VAGVPMPRDAEPR-HLLVNGATGTGKSVLLRELAYTGLLR----GDRMVIVDPN 87
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 35.8 bits (81), Expect = 0.013
Identities = 24/178 (13%), Positives = 57/178 (32%), Gaps = 4/178 (2%)
Query: 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPV 512
MPH++I+G G GK+ +++ + LL R + V + I +
Sbjct: 35 NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKK 94
Query: 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDR 572
+ P ++ + + + + + + A N K +Q+
Sbjct: 95 LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAI 154
Query: 573 KTGEAIYETEHFDFQHMPYIVVVI----DEMADLMMVARKDIESAVQRLAQMARASGI 626
+ + + + + D + ++ A D+ A+ L G+
Sbjct: 155 LRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGL 212
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli
[TaxId: 562]}
Length = 63
Score = 34.2 bits (79), Expect = 0.044
Identities = 7/46 (15%), Positives = 25/46 (54%)
Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785
D+L + ++ ++ + + + + + ++ G+ +E M++ G+I
Sbjct: 4 DNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGII 49
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 60
Score = 33.1 bits (76), Expect = 0.091
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785
D+ K ++I+ +D + + I ++LGI ++ +EEKG+I
Sbjct: 2 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGII 47
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 60
Score = 32.7 bits (75), Expect = 0.11
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785
D++ K+ + I+ D KA + I + G+ + I + E GVI
Sbjct: 2 DEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVI 47
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus
subtilis [TaxId: 1423]}
Length = 63
Score = 31.2 bits (71), Expect = 0.32
Identities = 7/46 (15%), Positives = 22/46 (47%)
Query: 740 DDLYKQAVDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI 785
D + ++ + +D++ S+ + R++ + + +E G+I
Sbjct: 4 DQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGII 49
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 30.3 bits (67), Expect = 0.65
Identities = 27/220 (12%), Positives = 56/220 (25%), Gaps = 14/220 (6%)
Query: 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNP 516
L+ G GSGK T + S ++ T +I D + +D + L V
Sbjct: 35 FLLGGQPGSGK-----TSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKH 89
Query: 517 QKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGE 576
+ Q + + Q + +
Sbjct: 90 VTPYSNRMTEAIISRLSDQGYNLVIEGT-GRTTDVPIQTATMLQAKGYETKMYVMAVPKI 148
Query: 577 AIYETEHFDFQHMPYIVVVIDEMADLMMVAR--KDIESAVQRLAQMARASGIHVIMATQR 634
Y ++ M + K++ + ++ L + S I +
Sbjct: 149 NSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNREGV 208
Query: 635 PSVDVITGTIKANFPTRISFQVSSKIDSRTILGEQGAEQL 674
P+ + K +R + G++ L
Sbjct: 209 KLYS------SLETPSISPKETLEKELNRKVSGKEIQPTL 242
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 30.2 bits (68), Expect = 0.71
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 728 EEMRFSENSSVADDLYKQAVDIVLRD-NKASISYIQRRLGIGYNRAASIIENMEEKG 783
E+ ++ +L +L N+ S ++ IG +A I+ E G
Sbjct: 1 EKAEDCWELQISPELLAHGRQKILDLLNEGSARDLRSLQRIGPKKAQLIVGWRELHG 57
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 90
Score = 30.0 bits (68), Expect = 0.79
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 747 VDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKG 783
VD+ N AS + + R G+ A +I+ + + G
Sbjct: 27 VDV----NTASAALLARISGLNSTLAQNIVAHRDANG 59
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 222
Score = 29.5 bits (65), Expect = 0.97
Identities = 23/209 (11%), Positives = 63/209 (30%), Gaps = 13/209 (6%)
Query: 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMID-PKMLELSVYDGIPNLLTP 511
+ L+ G G+GK+ T++ +L + +I + ++ G
Sbjct: 2 PIAVTLLTGFLGAGKT----TLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIK 57
Query: 512 VVTNPQKAVTVLKWLV----CEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQ 567
+TN + L ++ + + I+ + + +
Sbjct: 58 TLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLC 117
Query: 568 TGFDRKTGEAIYETEHFDFQHMPYIVVVI-DEMADLMMVARKDIESAVQRLAQMARASGI 626
+ A+ + H D Q + + AD +++ + D+ ++L +
Sbjct: 118 QRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGEAEKLHERLARINA 177
Query: 627 HV-IMATQRPSVD--VITGTIKANFPTRI 652
+ +D ++ T +
Sbjct: 178 RAPVYTVTHGDIDLGLLFNTNGFMLEENV 206
>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain
{Thermus aquaticus [TaxId: 271]}
Length = 223
Score = 29.7 bits (65), Expect = 1.0
Identities = 15/124 (12%), Positives = 30/124 (24%), Gaps = 6/124 (4%)
Query: 48 WDVYDPSFSYITLRSPKNFLGYGGAIFADVAIQFFGIASVFFLPPPTMWALSLLFDKKIY 107
+F I P +G V + F + L F +K
Sbjct: 72 LWEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAV 131
Query: 108 CFSKRATAWLINILVSATFFASFSPSQSWPIQNGFGGIIGDLIIRLPFLFFESYPRKLGI 167
K + + + F+ + + + G + F +
Sbjct: 132 RLLKPGGVLVFVVPATWLVLEDFALLREFLAREG------KTSVYYLGEVFPQKKVSAVV 185
Query: 168 LFFQ 171
+ FQ
Sbjct: 186 IRFQ 189
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 29.1 bits (64), Expect = 1.2
Identities = 5/38 (13%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 457 LLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDP 494
++ G+GK+ + +++ R +++ P
Sbjct: 12 TIMDLHPGAGKTKRY---LPAIVREAIKRGLRTLILAP 46
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 28.7 bits (64), Expect = 2.0
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 459 IAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMID 493
I G +GSGKS + L+ R + ++ID
Sbjct: 34 IVGRSGSGKS-----TLTKLIQRFYIPENGQVLID 63
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 243
Score = 28.5 bits (63), Expect = 2.1
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 747 VDIVLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVIGPASSTGKREILISSME 802
+D + K + + G N IE+M + GVI P ++ + S+ E
Sbjct: 177 LDPIDILLKLRAEHAKGNKTYGINVFTGEIEDMVKNGVIEPIRV--GKQAIESATE 230
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 28.3 bits (63), Expect = 2.3
Identities = 33/196 (16%), Positives = 60/196 (30%), Gaps = 45/196 (22%)
Query: 459 IAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQK 518
+ G +GSGKS I SL+ R I++D L + N + V N
Sbjct: 46 LVGRSGSGKS-----TIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVH- 99
Query: 519 AVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGE-- 576
L Y + + I+ ++A F + G D GE
Sbjct: 100 ----LFNDTVANNIAYARTEEYSREQIEE-AARMAYAM----DFINKMDNGLDTIIGENG 150
Query: 577 ---------------AIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMA 621
A+ I+++ + + L + + I++A+ L +
Sbjct: 151 VLLSGGQRQRIAIARALL--------RDSPILILDEATSALDTESERAIQAALDELQK-- 200
Query: 622 RASGIHVIMATQRPSV 637
++ R S
Sbjct: 201 ---NRTSLVIAHRLST 213
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 28.3 bits (63), Expect = 2.4
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 459 IAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMID 493
+ G GSGKS + +LL + +++D
Sbjct: 45 LVGPNGSGKST-----VAALLQNLYQPTGGQLLLD 74
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 28.2 bits (61), Expect = 2.4
Identities = 24/182 (13%), Positives = 48/182 (26%), Gaps = 3/182 (1%)
Query: 453 RMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPV 512
++ G G GK+ A + ++ L Q + +L V + + N+
Sbjct: 51 VFRAAMLYGPPGIGKTTAAH-LVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVG 109
Query: 513 VTNPQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDR 572
+ L + G R G + + +T +
Sbjct: 110 YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKM 169
Query: 573 KTGEAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMAT 632
+ + + F I + +A + + RL Q R VI
Sbjct: 170 RPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP--NVIDRLIQTTRGDIRQVINLL 227
Query: 633 QR 634
Sbjct: 228 ST 229
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 28.0 bits (61), Expect = 2.9
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 447 IIADLARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIP 506
+ A + +L+ G G+GKS A+ + +LL + + + + +
Sbjct: 21 LTAVDPGIGGVLVFGDRGTGKSTAVRALA-ALLPEIEAVEGCPVSSPNVEMIPDWATVLS 79
Query: 507 N 507
Sbjct: 80 T 80
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 27.8 bits (60), Expect = 4.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 453 RMPHLLIAGTTGSGKSVAINTMILSLL 479
+PH+L G G+GK+ I + L
Sbjct: 32 NLPHMLFYGPPGTGKTSTILALTKELY 58
>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus
thermophilus [TaxId: 274]}
Length = 136
Score = 27.4 bits (60), Expect = 4.1
Identities = 10/104 (9%), Positives = 29/104 (27%), Gaps = 9/104 (8%)
Query: 532 ERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTGEAIYETEHFDFQHMPY 591
+ + + R + +V + + + + + E P
Sbjct: 23 KDPSRPAHYVPRYLREQGYRVLPVNP--RFQGEELFGEEAVASLLDLKEPVDILDVFRPP 80
Query: 592 IVV--VIDEMADLM---MVARKDIESAVQRLAQMARASGIHVIM 630
+ + E+ L + + I + + +GI V+
Sbjct: 81 SALMDHLPEVLALRPGLVWLQSGIRH--PEFEKALKEAGIPVVA 122
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 27.5 bits (61), Expect = 4.6
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 596 IDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQR 634
IDE++ + + DI + L + G H+I +
Sbjct: 209 IDEISSMTSMTTTDILHTAKTLNILRYYKGQHIIFLNED 247
>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli
[TaxId: 562]}
Length = 271
Score = 27.2 bits (59), Expect = 4.9
Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 3/116 (2%)
Query: 589 MPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQRP--SVDVITGTIKA 646
+ ++ ID M +++ I AV+ ARA G++V++ T RP V +
Sbjct: 2 LAIKLIAID-MDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHM 60
Query: 647 NFPTRISFQVSSKIDSRTILGEQGAEQLLGQGDMLYMTGGGRVQRIHGPFVSDIEV 702
P + + + G A+ L D ++ R H + +
Sbjct: 61 EQPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLEKLSREVGSHFHALDRTTL 116
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 27.2 bits (60), Expect = 5.0
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 441 SIEGKPIIADL----ARMPHLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKM 496
+ G P++ ++ + L I G+TGSGK+ +L L+ A +I ++
Sbjct: 45 CLVGNPVLKNINLNIEKGEMLAITGSTGSGKTS-----LLMLILGELEASEGIIKHSGRV 99
>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 329
Score = 27.2 bits (58), Expect = 5.7
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 2/46 (4%)
Query: 371 GIKSSRIIGLSDDIARSMSAISARVAVIPRRNAIGIELPNDIRETV 416
GI + G IA+ +S + ++ I + N
Sbjct: 9 GIGDTNGYGWG--IAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKF 52
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga
maritima [TaxId: 2336]}
Length = 62
Score = 27.0 bits (60), Expect = 6.0
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 750 VLRDNKASISYIQRRLGIGYNRAASIIENMEEKGVI---GPASSTGKR 794
+ + S + LG+ I + EKG++ + R
Sbjct: 7 RIMKSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEEKDSPKGVGR 54
>d1vfsa2 c.1.6.1 (A:13-249) Alanine racemase {Streptomyces
lavendulae [TaxId: 1914]}
Length = 237
Score = 26.8 bits (58), Expect = 6.2
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 355 VRPGPVITLYELEPAPGIKSSRIIGL 380
VR G + +Y + P+P + + +GL
Sbjct: 211 VRTG--LAVYGVSPSPELGTPAQLGL 234
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 270
Score = 27.1 bits (60), Expect = 6.4
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 596 IDEMADLMMVARKDIESAVQRLAQMARASGIHVIMATQR 634
I +++ L + +DI S + L + S VI+ ++
Sbjct: 207 IKKLSKLTGICPQDITSTLHHLRMLDFRSDQFVIIRREK 245
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 26.8 bits (59), Expect = 7.4
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 459 IAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKML 497
AG +G GKS I SLL R I ID + +
Sbjct: 33 FAGPSGGGKS-----TIFSLLERFYQPTAGEITIDGQPI 66
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 26.5 bits (57), Expect = 7.7
Identities = 15/173 (8%), Positives = 40/173 (23%), Gaps = 7/173 (4%)
Query: 456 HLLIAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTN 515
H+ + G G GK+ I+ L + L+
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSG--VPVDGFYTEEVRQGGRRIGFDVVTLSGTRGP 60
Query: 516 PQKAVTVLKWLVCEMEERYQKMSKIGVRNIDGFNLKVAQYHNTGKKFNRTVQTGFDRKTG 575
+ E + + L+ A + + + +
Sbjct: 61 LSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELF 120
Query: 576 EAIYETEHFDFQHMPYIVVVIDEMADLMMVARKDIESAVQRLAQMARASGIHV 628
++ P +++ + V + + V+ + +V
Sbjct: 121 SQLFIQAVRQTLSTPGTIILGT-----IPVPKGKPLALVEEIRNRKDVKVFNV 168
>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 26.5 bits (58), Expect = 7.9
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 618 AQMARASGIHVI----MATQRPSVDVITGTIKANFPTRISF 654
AR G+H AT+R + ++ + N ++F
Sbjct: 200 IHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTF 240
>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura
stramonium), I [TaxId: 4076]}
Length = 258
Score = 26.6 bits (58), Expect = 8.2
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 374 SSRIIGLSDDIARSMSAISARVAVIPRRNAIGIELPNDIRETVMLRDLIVSRVFEKNQCD 433
S+ IG + I ++ + ARV R E RE + + V + + + D
Sbjct: 14 GSKGIGYA--IVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERD 71
Query: 434 LAINLGKSIEGKPI 447
+ + +
Sbjct: 72 KLMQTVAHVFDGKL 85
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 26.4 bits (58), Expect = 9.0
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 459 IAGTTGSGKSVAINTMILSLLYRMTPAQCRLIMIDPKMLELSVYDGIPNLLTPVVTNPQK 518
+ G +G GK+ + MI L P++ ++ + D + + +P + Q
Sbjct: 34 LLGPSGCGKTTTLR-MIAGLE---EPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQS 89
Query: 519 AVTVLKWLVCEMEERYQKMSKIGVRNID 546
V + K+ K+ + ID
Sbjct: 90 YALYPHMTVYDNIAFPLKLRKVPRQEID 117
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.398
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,967,517
Number of extensions: 143848
Number of successful extensions: 508
Number of sequences better than 10.0: 1
Number of HSP's gapped: 507
Number of HSP's successfully gapped: 52
Length of query: 806
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 713
Effective length of database: 1,130,706
Effective search space: 806193378
Effective search space used: 806193378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.5 bits)