Query         gi|254780800|ref|YP_003065213.1| hypothetical protein CLIBASIA_03455 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 192
No_of_seqs    115 out of 360
Neff          3.3 
Searched_HMMs 23785
Date          Mon May 30 12:39:38 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780800.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2qww_A Transcriptional regulat  56.3     6.7 0.00028   20.0   2.8   35  106-140    44-78  (154)
  2 2a61_A Transcriptional regulat  55.8     9.4  0.0004   19.1   3.5   46  107-152    37-85  (145)
  3 2fxa_A Protease production reg  53.7     6.4 0.00027   20.1   2.4   34  107-140    52-85  (207)
  4 1j5y_A Transcriptional regulat  52.8     9.1 0.00038   19.2   3.0   21   14-34     29-50  (187)
  5 3lmm_A Uncharacterized protein  52.1     1.7 7.1E-05   23.7  -0.8  105   15-135   439-548 (583)
  6 1jgs_A Multiple antibiotic res  51.6      13 0.00055   18.3   3.7   47  107-153    38-87  (138)
  7 2hoe_A N-acetylglucosamine kin  51.2     6.3 0.00027   20.2   2.0   28   21-48     34-61  (380)
  8 2nyx_A Probable transcriptiona  50.7     8.7 0.00037   19.3   2.6   34  106-139    48-81  (168)
  9 3bdd_A Regulatory protein MARR  50.4      11 0.00047   18.7   3.2   35  106-140    34-68  (142)
 10 2nnn_A Probable transcriptiona  49.9      11 0.00047   18.7   3.1   33  107-139    42-74  (140)
 11 3nrv_A Putative transcriptiona  49.6      15 0.00063   17.9   3.7   39   98-139    38-76  (148)
 12 3k0l_A Repressor protein; heli  45.6      13 0.00053   18.4   2.8   48  106-153    49-99  (162)
 13 2eth_A Transcriptional regulat  44.5      18 0.00075   17.4   3.4   35  106-140    47-81  (154)
 14 3cjn_A Transcriptional regulat  43.6      13 0.00055   18.3   2.6   34  107-140    56-89  (162)
 15 1ub9_A Hypothetical protein PH  41.5      16 0.00068   17.7   2.8   34  106-139    19-52  (100)
 16 2o38_A Hypothetical protein; a  39.5      23 0.00097   16.8   3.6   71   60-145    11-81  (120)
 17 3bja_A Transcriptional regulat  38.9     9.6  0.0004   19.1   1.3   34  106-139    36-69  (139)
 18 3bpv_A Transcriptional regulat  38.5      24   0.001   16.7   3.6   33  107-139    33-65  (138)
 19 2pex_A Transcriptional regulat  38.2      18 0.00075   17.5   2.6   33  107-139    51-83  (153)
 20 3dn7_A Cyclic nucleotide bindi  37.8     5.6 0.00023   20.5   0.0   86   52-140   101-191 (194)
 21 1z91_A Organic hydroperoxide r  37.1      14 0.00061   18.0   2.0   34  106-139    43-76  (147)
 22 1zd1_A Sulfotransferase 4A1; S  35.7     8.5 0.00036   19.4   0.7   13  160-172   219-231 (284)
 23 2rdp_A Putative transcriptiona  34.3      28  0.0012   16.3   3.2   34  107-140    46-79  (150)
 24 3g3z_A NMB1585, transcriptiona  34.2      28  0.0012   16.2   3.7   33  107-139    35-67  (145)
 25 3bj6_A Transcriptional regulat  33.3      26  0.0011   16.5   2.8   34  106-139    43-76  (152)
 26 2fbi_A Probable transcriptiona  33.3      23 0.00096   16.8   2.5   35  106-140    39-73  (142)
 27 1j1v_A Chromosomal replication  33.2      17 0.00072   17.5   1.9   30  107-136    36-66  (94)
 28 2hr3_A Probable transcriptiona  31.9      31  0.0013   16.0   3.2   46  107-152    39-88  (147)
 29 3kp7_A Transcriptional regulat  31.6      26  0.0011   16.4   2.6   34  106-140    41-74  (151)
 30 3ech_A MEXR, multidrug resista  30.2      27  0.0011   16.4   2.5   35  106-140    40-74  (142)
 31 3e6m_A MARR family transcripti  28.9      26  0.0011   16.5   2.2   46  107-152    57-105 (161)
 32 3oou_A LIN2118 protein; protei  28.7      24   0.001   16.6   2.0   34  106-139     9-43  (108)
 33 3hsr_A HTH-type transcriptiona  28.6      16 0.00069   17.7   1.2   33  107-139    40-72  (140)
 34 3cdh_A Transcriptional regulat  28.1      31  0.0013   16.0   2.5   34  107-140    47-80  (155)
 35 3nqo_A MARR-family transcripti  27.7      36  0.0015   15.6   3.2   33  107-139    45-79  (189)
 36 2d1h_A ST1889, 109AA long hypo  27.6      36  0.0015   15.6   3.4   31  108-138    27-57  (109)
 37 3lsg_A Two-component response   26.9      29  0.0012   16.2   2.2   29  110-138    10-40  (103)
 38 1q20_A SULT2B1B, sulfotransfer  26.5      15 0.00063   17.9   0.7   13  160-172   220-232 (299)
 39 2fa5_A Transcriptional regulat  25.5      40  0.0017   15.3   3.7   34  106-139    52-85  (162)
 40 2reo_A Putative sulfotransfera  25.2      16 0.00069   17.7   0.7   13  160-172   226-238 (305)
 41 1a56_A C-551, ferricytochrome   25.2      40  0.0017   15.3   2.7   23   90-112    20-43  (81)
 42 3cuo_A Uncharacterized HTH-typ  25.2      40  0.0017   15.3   2.7   30  107-136    28-57  (99)
 43 2cu1_A Mitogen-activated prote  24.4      35  0.0015   15.6   2.2   23  154-176    54-76  (103)
 44 3oio_A Transcriptional regulat  24.4      32  0.0014   15.9   2.0   33  106-138    11-44  (113)
 45 2bv6_A MGRA, HTH-type transcri  23.9      32  0.0013   15.9   1.9   34  106-139    40-73  (142)
 46 1sfx_A Conserved hypothetical   23.6      43  0.0018   15.1   3.2   33  107-139    24-56  (109)
 47 1q44_A RARO47;, steroid sulpho  23.5      19 0.00081   17.2   0.7   13  160-172   252-264 (326)
 48 2zpt_X Tyrosine-ester sulfotra  23.4      19 0.00079   17.3   0.7   12  160-171   216-227 (295)
 49 3f27_D Transcription factor SO  22.9      30  0.0012   16.1   1.6   20  111-130    25-44  (83)
 50 2fbh_A Transcriptional regulat  22.7      45  0.0019   15.0   3.3   34  107-140    41-75  (146)
 51 3mgb_A TEG12; sulfotransferase  22.3      20 0.00084   17.1   0.6   13  160-172   226-238 (319)
 52 2ov8_A STAL; sulfotransferase,  21.9      21 0.00088   17.0   0.7   12    5-16     13-26  (288)
 53 1s3j_A YUSO protein; structura  21.4      45  0.0019   15.0   2.3   35  106-140    40-74  (155)
 54 2gwh_A Sulfotransferase 1C2; s  21.3      21  0.0009   17.0   0.6   13  160-172   219-231 (298)
 55 2wte_A CSA3; antiviral protein  21.3      48   0.002   14.8   3.6   38   98-138   150-187 (244)
 56 2jrh_A Mitogen-activated prote  21.3      48   0.002   14.8   2.4   22  154-175    50-71  (94)
 57 1xsv_A Hypothetical UPF0122 pr  21.0      49   0.002   14.8   3.3   34  108-141    32-65  (113)
 58 1gt0_D Transcription factor SO  21.0      28  0.0012   16.2   1.2   20  111-130    21-40  (80)
 59 1q1q_A SULT2B1A, sulfotransfer  20.8      23 0.00095   16.8   0.7   10    7-16     53-62  (350)
 60 2npt_B Mitogen-activated prote  20.2      48   0.002   14.8   2.2   22  154-175    66-87  (100)
 61 1ls6_A ARYL sulfotransferase;   20.1      24 0.00099   16.7   0.6   13  160-172   216-228 (295)

No 1  
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=56.28  E-value=6.7  Score=20.04  Aligned_cols=35  Identities=20%  Similarity=0.208  Sum_probs=30.5

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf             79999998424558424346643875899999628
Q gi|254780800|r  106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR  140 (192)
Q Consensus       106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR  140 (192)
                      -.+++.|..+|.++-++|++..|.+++||..+=++
T Consensus        44 ~~vL~~L~~~~~~t~~~La~~l~~~~~tvs~~v~~   78 (154)
T 2qww_A           44 LAMINVIYSTPGISVADLTKRLIITGSSAAANVDG   78 (154)
T ss_dssp             HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99999999779989999999979787579999999


No 2  
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=55.84  E-value=9.4  Score=19.14  Aligned_cols=46  Identities=26%  Similarity=0.257  Sum_probs=34.6

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC---CCCCCCCCCCCC
Q ss_conf             9999998424558424346643875899999628---887701268377
Q gi|254780800|r  107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR---THWNTANLVPMD  152 (192)
Q Consensus       107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR---tHWN~~Ni~P~D  152 (192)
                      .+++.|.+||.++-++|++.+|.++++|..+=++   -.|=...-.|.|
T Consensus        37 ~vL~~i~~~~~~t~~ela~~~~~~~~~vs~~v~~L~~~gli~~~~~~~D   85 (145)
T 2a61_A           37 DILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPAD   85 (145)
T ss_dssp             HHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             9999998779989999999989798789999999852893799675889


No 3  
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=53.74  E-value=6.4  Score=20.14  Aligned_cols=34  Identities=18%  Similarity=0.200  Sum_probs=24.2

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf             9999998424558424346643875899999628
Q gi|254780800|r  107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR  140 (192)
Q Consensus       107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR  140 (192)
                      .|+|+|.+++.++-++|++..|.+++|+..+=+|
T Consensus        52 ~iL~~L~~~~~~s~~ela~~~~~~~stvs~~i~~   85 (207)
T 2fxa_A           52 HILWIAYQLNGASISEIAKFGVMHVSTAFNFSKK   85 (207)
T ss_dssp             HHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             9999999769949999999988698799999999


No 4  
>1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=52.81  E-value=9.1  Score=19.23  Aligned_cols=21  Identities=24%  Similarity=0.078  Sum_probs=14.0

Q ss_pred             HHHHH-CCCCHHHHHHHHCCCH
Q ss_conf             02420-4347999996708712
Q gi|254780800|r   14 WLIDN-TSLSFDQIAEFCGLHL   34 (192)
Q Consensus        14 WLvdN-T~LtF~QIa~FC~lH~   34 (192)
                      +|.++ ..+|-.++|+-+|.-.
T Consensus        29 ~L~~~~~~vs~~eLa~~l~vS~   50 (187)
T 1j5y_A           29 ILERSKEPVSGAQLAEELSVSR   50 (187)
T ss_dssp             HHHHCSSCBCHHHHHHHHTSCH
T ss_pred             HHHHCCCCCCHHHHHHHHCCCH
T ss_conf             9998599676999999979899


No 5  
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=52.09  E-value=1.7  Score=23.68  Aligned_cols=105  Identities=15%  Similarity=0.146  Sum_probs=50.6

Q ss_pred             HHHHCCCCHHHHHHHHCCCHHHEEEECCHHHHCCCCCCCCCCCC-----CCCHHHHHHHHHCCCCCEECCCCCCCCCCCC
Q ss_conf             24204347999996708712051111241463896114740127-----8489999997616487704036643344224
Q gi|254780800|r   15 LIDNTSLSFDQIAEFCGLHLLEVMAIADGESLQGIKGFNLISSG-----QLSAEEIALGEKDKNYKLKISKPKSYILEST   89 (192)
Q Consensus        15 LvdNT~LtF~QIa~FC~lH~LEVq~IADGeva~gi~g~dPi~~g-----qLt~eEI~~ce~d~~~~L~l~~~~~~~~~~~   89 (192)
                      |.+|-.+|..++++.|++..-+++.+-+.-+..|+...-.+ .|     .|+..--+...+-.              ...
T Consensus       439 l~~~~~it~~ela~~l~~s~~~~~~~L~~L~~~glie~~~~-~g~~~~y~ls~~~~~~~~~~~--------------~~~  503 (583)
T 3lmm_A          439 LFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLI-IAHDGVWLLGNACREILRKVE--------------PSP  503 (583)
T ss_dssp             HHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESE-EEETTEEEECHHHHHHHTSCC-----------------
T ss_pred             HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCC-CCCCCEEEECHHHHHHHHCCC--------------CCC
T ss_conf             98688878999998868899999999999997797332455-665875852688876520100--------------121


Q ss_pred             CCCCCCCCHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH
Q ss_conf             3556534203311571799999984245584243466438758999
Q gi|254780800|r   90 KKKKRYTPVSKRQDRPNAILWLIRNYPRLKDAQISHLVGTTGSTIE  135 (192)
Q Consensus        90 ~Kg~kYTPlSkRqDkPdAI~WLiknhPeL~D~QI~KLiGTTK~TI~  135 (192)
                      ....+|.+.+ .+.-+..|+.+++.|+.++-.+|+++.|-++.|+.
T Consensus       504 ~~~~~~~~~~-~~~~~~~Il~~l~~~g~it~~ei~~llgls~~~v~  548 (583)
T 3lmm_A          504 FSPVRYLSTD-QAELTNAAMLWLSEVGDLATSDLMAMCGVSRGTAK  548 (583)
T ss_dssp             ----------------------------------------------
T ss_pred             CCCCCCCCCC-HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH
T ss_conf             1100246767-77899999999997599389999999787999999


No 6  
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=51.62  E-value=13  Score=18.26  Aligned_cols=47  Identities=13%  Similarity=0.222  Sum_probs=34.6

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC---CCCCCCCCCCCCCC
Q ss_conf             999999842455842434664387589999962---88877012683773
Q gi|254780800|r  107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN---RTHWNTANLVPMDP  153 (192)
Q Consensus       107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd---RtHWN~~Ni~P~DP  153 (192)
                      .+++.+.++|.++-.+|++..|.+++||..+=+   +.-|=.---.|.|-
T Consensus        38 ~vL~~l~~~~~~t~~ela~~~~~~~~~vs~~l~~L~~~g~i~r~~~~~D~   87 (138)
T 1jgs_A           38 KVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDK   87 (138)
T ss_dssp             HHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCS
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             99999987799899999999897887999999999868977985568888


No 7  
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=51.20  E-value=6.3  Score=20.19  Aligned_cols=28  Identities=32%  Similarity=0.138  Sum_probs=11.1

Q ss_pred             CCHHHHHHHHCCCHHHEEEECCHHHHCC
Q ss_conf             4799999670871205111124146389
Q gi|254780800|r   21 LSFDQIAEFCGLHLLEVMAIADGESLQG   48 (192)
Q Consensus        21 LtF~QIa~FC~lH~LEVq~IADGeva~g   48 (192)
                      +|-.+||+-+||..=-|-.|-+.=...|
T Consensus        34 iSR~eLa~~tgLS~~Tvs~iv~~L~~~g   61 (380)
T 2hoe_A           34 VSRVELAEELGLTKTTVGEIAKIFLEKG   61 (380)
T ss_dssp             BCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf             5999999888959999999999999889


No 8  
>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV}
Probab=50.71  E-value=8.7  Score=19.34  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=30.6

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf             7999999842455842434664387589999962
Q gi|254780800|r  106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN  139 (192)
Q Consensus       106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd  139 (192)
                      -.|+++|..+|.++-++|++..|-++++|..+=+
T Consensus        48 ~~vL~~l~~~~~~~~~eLa~~l~i~~~~vs~~l~   81 (168)
T 2nyx_A           48 FRTLVILSNHGPINLATLATLLGVQPSATGRMVD   81 (168)
T ss_dssp             HHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9999999967996999999998969889999999


No 9  
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis 89}
Probab=50.42  E-value=11  Score=18.66  Aligned_cols=35  Identities=9%  Similarity=0.065  Sum_probs=30.4

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf             79999998424558424346643875899999628
Q gi|254780800|r  106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR  140 (192)
Q Consensus       106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR  140 (192)
                      -.|++.+.++|.++-++|++..|-+|+|+..+=++
T Consensus        34 ~~vL~~l~~~~~~t~~~la~~l~i~~~tvs~~v~~   68 (142)
T 3bdd_A           34 YSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKL   68 (142)
T ss_dssp             HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99999998779989999999989698689999999


No 10 
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa}
Probab=49.88  E-value=11  Score=18.66  Aligned_cols=33  Identities=18%  Similarity=0.187  Sum_probs=29.6

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf             999999842455842434664387589999962
Q gi|254780800|r  107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN  139 (192)
Q Consensus       107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd  139 (192)
                      .|++.|.++|+++-++|++..|-++.||..+=+
T Consensus        42 ~vL~~l~~~~~~t~~eLa~~~~~~~~~vs~~i~   74 (140)
T 2nnn_A           42 AALVRLGETGPCPQNQLGRLTAMDAATIKGVVE   74 (140)
T ss_dssp             HHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHH
T ss_conf             999999987990999999987857352999999


No 11 
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=49.61  E-value=15  Score=17.93  Aligned_cols=39  Identities=10%  Similarity=0.187  Sum_probs=31.7

Q ss_pred             HHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf             033115717999999842455842434664387589999962
Q gi|254780800|r   98 VSKRQDRPNAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN  139 (192)
Q Consensus        98 lSkRqDkPdAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd  139 (192)
                      ++..|=   .|++.+..+|.++-++|++..|.+|++|..+=+
T Consensus        38 lt~~q~---~vL~~L~~~~~~t~~~la~~l~i~~~~vsr~l~   76 (148)
T 3nrv_A           38 IGMTEW---RIISVLSSASDCSVQKISDILGLDKAAVSRTVK   76 (148)
T ss_dssp             CCHHHH---HHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             899999---999999977997999999998969989999999


No 12 
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=45.60  E-value=13  Score=18.36  Aligned_cols=48  Identities=15%  Similarity=0.187  Sum_probs=36.3

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC---CCCCCCCCCCCCC
Q ss_conf             79999998424558424346643875899999628---8877012683773
Q gi|254780800|r  106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR---THWNTANLVPMDP  153 (192)
Q Consensus       106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR---tHWN~~Ni~P~DP  153 (192)
                      -.|+..|.+||.++-++|++..+-+++||..+=+|   .-|=.-.-.|.|-
T Consensus        49 ~~vL~~l~~~~~~t~~~La~~l~~~~~~vs~~l~~L~~~gli~r~~~~~D~   99 (162)
T 3k0l_A           49 FTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHG   99 (162)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSS
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             999999997799899999999896886999999999988997985279998


No 13 
>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=44.45  E-value=18  Score=17.44  Aligned_cols=35  Identities=14%  Similarity=0.191  Sum_probs=29.1

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf             79999998424558424346643875899999628
Q gi|254780800|r  106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR  140 (192)
Q Consensus       106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR  140 (192)
                      -.++..|..+|+++-++|++..|.+++|+..+=++
T Consensus        47 ~~vL~~l~~~~~~t~~eLa~~l~i~~~tvs~~i~~   81 (154)
T 2eth_A           47 LYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDS   81 (154)
T ss_dssp             HHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99999999869949999999989798899999999


No 14 
>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=43.60  E-value=13  Score=18.26  Aligned_cols=34  Identities=12%  Similarity=0.066  Sum_probs=29.5

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf             9999998424558424346643875899999628
Q gi|254780800|r  107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR  140 (192)
Q Consensus       107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR  140 (192)
                      -|++.|..+|.++-++|++..|-++++|..+=++
T Consensus        56 ~iL~~l~~~~~~t~~~La~~~~~~~~~vsr~v~~   89 (162)
T 3cjn_A           56 RALAILSAKDGLPIGTLGIFAVVEQSTLSRALDG   89 (162)
T ss_dssp             HHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             9999998479989999999989798899999999


No 15 
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=41.53  E-value=16  Score=17.71  Aligned_cols=34  Identities=12%  Similarity=0.121  Sum_probs=29.3

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf             7999999842455842434664387589999962
Q gi|254780800|r  106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN  139 (192)
Q Consensus       106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd  139 (192)
                      -.|..++..+++++-++|++.+|.+++|+...=+
T Consensus        19 ~~IL~~L~~~~~~t~~eLa~~l~is~~~vs~~l~   52 (100)
T 1ub9_A           19 LGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIR   52 (100)
T ss_dssp             HHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9999998518998399999998919989999999


No 16 
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.83A {Rhodopseudomonas palustris CGA009} SCOP: a.35.1.13
Probab=39.52  E-value=23  Score=16.76  Aligned_cols=71  Identities=18%  Similarity=0.175  Sum_probs=47.7

Q ss_pred             CCHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf             48999999761648770403664334422435565342033115717999999842455842434664387589999962
Q gi|254780800|r   60 LSAEEIALGEKDKNYKLKISKPKSYILESTKKKKRYTPVSKRQDRPNAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN  139 (192)
Q Consensus        60 Lt~eEI~~ce~d~~~~L~l~~~~~~~~~~~~Kg~kYTPlSkRqDkPdAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd  139 (192)
                      -+..||++++.|.-+.|-+...+.              +.-|..-=..|..++ ..-.|+..|.+++.|++.++|..+.+
T Consensus        11 ~~~~ei~~~sgNvf~DlG~~daee--------------l~~K~~L~~~I~~~i-~~~glTQ~eaA~~lGisq~~iS~l~~   75 (120)
T 2o38_A           11 STAAEITRGIGNVFADLGMPDAEE--------------RQTKLRLAYALNAVI-DRARLSQAAAAARLGINQPKVSALRN   75 (120)
T ss_dssp             -------------------CHHHH--------------HHHHHHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHCCCCCCHHH--------------HHHHHHHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf             763467878998101159896899--------------999999999999999-98699675565550888899899975


Q ss_pred             CCCCCC
Q ss_conf             888770
Q gi|254780800|r  140 RTHWNT  145 (192)
Q Consensus       140 RtHWN~  145 (192)
                      ....|.
T Consensus        76 Gk~~~~   81 (120)
T 2o38_A           76 YKLEGF   81 (120)
T ss_dssp             TCCTTC
T ss_pred             CCCCCC
T ss_conf             886788


No 17 
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987}
Probab=38.86  E-value=9.6  Score=19.09  Aligned_cols=34  Identities=6%  Similarity=0.164  Sum_probs=29.9

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf             7999999842455842434664387589999962
Q gi|254780800|r  106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN  139 (192)
Q Consensus       106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd  139 (192)
                      -.|++.|..+|.++-++|++..|.+++|+..+-+
T Consensus        36 ~~vL~~l~~~~~~t~~~La~~l~~~~~tvs~~l~   69 (139)
T 3bja_A           36 FGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQ   69 (139)
T ss_dssp             HHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHH
T ss_conf             9999999986998999998470868889999999


No 18 
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=38.48  E-value=24  Score=16.66  Aligned_cols=33  Identities=21%  Similarity=0.290  Sum_probs=28.0

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf             999999842455842434664387589999962
Q gi|254780800|r  107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN  139 (192)
Q Consensus       107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd  139 (192)
                      .++..+-.||.++-++|++..|.+++||..+=+
T Consensus        33 ~vL~~i~~~~~~t~~eLa~~~~~~~~~vs~~v~   65 (138)
T 3bpv_A           33 ACLLRIHREPGIKQDELATFFHVDKGTIARTLR   65 (138)
T ss_dssp             HHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             999999858997999999998979879999999


No 19 
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=38.24  E-value=18  Score=17.45  Aligned_cols=33  Identities=6%  Similarity=0.108  Sum_probs=29.0

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf             999999842455842434664387589999962
Q gi|254780800|r  107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN  139 (192)
Q Consensus       107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd  139 (192)
                      .|+..|.+++.++-++|++.+|.+++||..+=+
T Consensus        51 ~vL~~l~~~~~~~~~eLa~~l~~~~~tvs~~v~   83 (153)
T 2pex_A           51 LVMLVLWETDERSVSEIGERLYLDSATLTPLLK   83 (153)
T ss_dssp             HHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             999999847998999999998968868999999


No 20 
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, PSI-2, protein structure initiative; 1.80A {Cytophaga hutchinsonii atcc 33406}
Probab=37.76  E-value=5.6  Score=20.52  Aligned_cols=86  Identities=8%  Similarity=0.033  Sum_probs=44.8

Q ss_pred             CCCCCCCCCCHHHHHH-HHHCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCC----CCHHHHHHH
Q ss_conf             4740127848999999-76164877040366433442243556534203311571799999984245----584243466
Q gi|254780800|r   52 FNLISSGQLSAEEIAL-GEKDKNYKLKISKPKSYILESTKKKKRYTPVSKRQDRPNAILWLIRNYPR----LKDAQISHL  126 (192)
Q Consensus        52 ~dPi~~gqLt~eEI~~-ce~d~~~~L~l~~~~~~~~~~~~Kg~kYTPlSkRqDkPdAI~WLiknhPe----L~D~QI~KL  126 (192)
                      ..+..--.+.++...+ ++.+|.....+...-.....   .-....-.....+-.+-++++++.+|+    ++-.+|+.+
T Consensus       101 ~~~~~v~~i~~~~~~~l~~~~~~~~~~~~~~l~~~~~---~~~~~~~~l~~~~~~~R~~~~l~~~~~i~~~~t~~~iA~~  177 (194)
T 3dn7_A          101 VENCELLSITYTEQENLFERIPALERYFRLVYQKSFA---AAQLRSKFQHMYSKEEQYHNFSSRFPEFIQRVPQYLLASY  177 (194)
T ss_dssp             SSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHHH---HHHHHHHHHHHC----------------------------
T ss_pred             CCCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH---HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf             0067999982899999998699999999999985089---9999999974788999999999869253569799999999


Q ss_pred             HCCCHHHHHHHHCC
Q ss_conf             43875899999628
Q gi|254780800|r  127 VGTTGSTIEQIRNR  140 (192)
Q Consensus       127 iGTTK~TI~sIRdR  140 (192)
                      +|+|..|+.-||.+
T Consensus       178 lG~sr~tlSRi~k~  191 (194)
T 3dn7_A          178 LGFTPEYLSEIRKK  191 (194)
T ss_dssp             --------------
T ss_pred             HCCCHHHHHHHHHH
T ss_conf             79989999999998


No 21 
>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=37.10  E-value=14  Score=18.01  Aligned_cols=34  Identities=12%  Similarity=0.105  Sum_probs=29.6

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf             7999999842455842434664387589999962
Q gi|254780800|r  106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN  139 (192)
Q Consensus       106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd  139 (192)
                      -.|++.+.++|.++-++|++-.|.+++||..+=+
T Consensus        43 ~~vL~~l~~~~~~t~~eLa~~~~i~~~tit~~i~   76 (147)
T 1z91_A           43 YLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLK   76 (147)
T ss_dssp             HHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9999999977994999999997978878999999


No 22 
>1zd1_A Sulfotransferase 4A1; SGC, SULT4A1, structural genomics, structural genomics consortium; 2.24A {Homo sapiens}
Probab=35.72  E-value=8.5  Score=19.41  Aligned_cols=13  Identities=23%  Similarity=0.501  Sum_probs=6.2

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             8999999999973
Q gi|254780800|r  160 AQIDLDREIEKCS  172 (192)
Q Consensus       160 sQ~dLd~av~KA~  172 (192)
                      +...++++++..+
T Consensus       219 ~~~~l~~~~~~~s  231 (284)
T 1zd1_A          219 DKAQLEALTEHCH  231 (284)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
T ss_conf             9999999999702


No 23 
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=34.29  E-value=28  Score=16.25  Aligned_cols=34  Identities=18%  Similarity=0.118  Sum_probs=29.3

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf             9999998424558424346643875899999628
Q gi|254780800|r  107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR  140 (192)
Q Consensus       107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR  140 (192)
                      .+++.|..+|+++-++|++.+|-++++|..+=++
T Consensus        46 ~vL~~l~~~~~~t~~~La~~l~~~~~~vs~~l~~   79 (150)
T 2rdp_A           46 VALQWLLEEGDLTVGELSNKMYLACSTTTDLVDR   79 (150)
T ss_dssp             HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             9999999779959999999989688789999999


No 24 
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=34.20  E-value=28  Score=16.24  Aligned_cols=33  Identities=12%  Similarity=0.154  Sum_probs=29.1

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf             999999842455842434664387589999962
Q gi|254780800|r  107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN  139 (192)
Q Consensus       107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd  139 (192)
                      .|+..|..++.++-++|++.+|-+++||..+=+
T Consensus        35 ~iL~~l~~~~~~t~~~la~~l~~~~~~vs~~i~   67 (145)
T 3g3z_A           35 AVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCK   67 (145)
T ss_dssp             HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             999999987994999999998969889999999


No 25 
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3}
Probab=33.26  E-value=26  Score=16.49  Aligned_cols=34  Identities=21%  Similarity=0.148  Sum_probs=29.5

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf             7999999842455842434664387589999962
Q gi|254780800|r  106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN  139 (192)
Q Consensus       106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd  139 (192)
                      -.+++.|..+|.++-++++...|-++++|..+=+
T Consensus        43 ~~vL~~l~~~~~~t~~~La~~l~~~~~~is~~l~   76 (152)
T 3bj6_A           43 RAILEGLSLTPGATAPQLGAALQMKRQYISRILQ   76 (152)
T ss_dssp             HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9999999987998999999998969879999999


No 26 
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=33.25  E-value=23  Score=16.78  Aligned_cols=35  Identities=9%  Similarity=0.197  Sum_probs=30.3

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf             79999998424558424346643875899999628
Q gi|254780800|r  106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR  140 (192)
Q Consensus       106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR  140 (192)
                      -.+++.+.++++++-++|++-.|-++.+|..+=++
T Consensus        39 ~~vL~~l~~~~~~~~~~la~~l~i~~~~vs~~i~~   73 (142)
T 2fbi_A           39 WRVIRILRQQGEMESYQLANQACILRPSMTGVLAR   73 (142)
T ss_dssp             HHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99999999879979999999979898899999999


No 27 
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=33.22  E-value=17  Score=17.55  Aligned_cols=30  Identities=13%  Similarity=0.172  Sum_probs=23.3

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHC-CCHHHHHH
Q ss_conf             9999998424558424346643-87589999
Q gi|254780800|r  107 AILWLIRNYPRLKDAQISHLVG-TTGSTIEQ  136 (192)
Q Consensus       107 AI~WLiknhPeL~D~QI~KLiG-TTK~TI~s  136 (192)
                      ...||++.+..++-.+|++..| -.-.||-.
T Consensus        36 iamyL~r~~t~~sl~~IG~~fg~RdHsTV~h   66 (94)
T 1j1v_A           36 MAMALAKELTNHSLPEIGDAFGGRDHTTVLH   66 (94)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHTTSCCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHCCCCCCHHHH
T ss_conf             9999999882899999999968998409999


No 28 
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=31.92  E-value=31  Score=16.01  Aligned_cols=46  Identities=11%  Similarity=0.059  Sum_probs=31.3

Q ss_pred             HHHHHHH-HCCCCCHHHHHHHHCCCHHHHHHHHCC---CCCCCCCCCCCC
Q ss_conf             9999998-424558424346643875899999628---887701268377
Q gi|254780800|r  107 AILWLIR-NYPRLKDAQISHLVGTTGSTIEQIRNR---THWNTANLVPMD  152 (192)
Q Consensus       107 AI~WLik-nhPeL~D~QI~KLiGTTK~TI~sIRdR---tHWN~~Ni~P~D  152 (192)
                      .|+..|. +...++-++|++.+|.++.||..+=++   .-|=.-.-.|.|
T Consensus        39 ~vL~~i~~~~g~~t~~ela~~~~~~~~tvs~~l~~L~~~glv~r~~~~~D   88 (147)
T 2hr3_A           39 VVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQD   88 (147)
T ss_dssp             HHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC----
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             99999997699989999999989798799999999986796687357887


No 29 
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A
Probab=31.63  E-value=26  Score=16.44  Aligned_cols=34  Identities=15%  Similarity=0.219  Sum_probs=27.8

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf             79999998424558424346643875899999628
Q gi|254780800|r  106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR  140 (192)
Q Consensus       106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR  140 (192)
                      -.|+..+.++| ++-++|++..|-+|+||..+=++
T Consensus        41 ~~iL~~l~~~~-~t~~~la~~l~i~~~~vs~~i~~   74 (151)
T 3kp7_A           41 SHVLNMLSIEA-LTVGQITEKQGVNKAAVSRRVKK   74 (151)
T ss_dssp             HHHHHHHHHSC-BCHHHHHHHHCSCSSHHHHHHHH
T ss_pred             HHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99999986289-99999999989688899999999


No 30 
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A 3mex_A
Probab=30.20  E-value=27  Score=16.36  Aligned_cols=35  Identities=14%  Similarity=0.088  Sum_probs=29.7

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf             79999998424558424346643875899999628
Q gi|254780800|r  106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR  140 (192)
Q Consensus       106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR  140 (192)
                      -.|+..+.++|.++-++|++..|.++++|..+-+|
T Consensus        40 ~~iL~~l~~~~~~t~~~La~~l~i~~~~vsr~l~~   74 (142)
T 3ech_A           40 VHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRE   74 (142)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99999999779989999999989698799999999


No 31 
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=28.86  E-value=26  Score=16.49  Aligned_cols=46  Identities=17%  Similarity=0.174  Sum_probs=33.2

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC---CCCCCCCCCCCC
Q ss_conf             9999998424558424346643875899999628---887701268377
Q gi|254780800|r  107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR---THWNTANLVPMD  152 (192)
Q Consensus       107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR---tHWN~~Ni~P~D  152 (192)
                      .++..|..|+.++-++|++..|.++++|..+=++   ..|=.---.|.|
T Consensus        57 ~vL~~l~~~~~~t~~~la~~l~i~~~~vs~~i~~L~~~glv~r~~~~~D  105 (161)
T 3e6m_A           57 RLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDAD  105 (161)
T ss_dssp             HHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---C
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             9999999779989999999989788799999999983897798325899


No 32 
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=28.70  E-value=24  Score=16.64  Aligned_cols=34  Identities=6%  Similarity=0.183  Sum_probs=22.9

Q ss_pred             HHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHHC
Q ss_conf             799999984245-5842434664387589999962
Q gi|254780800|r  106 NAILWLIRNYPR-LKDAQISHLVGTTGSTIEQIRN  139 (192)
Q Consensus       106 dAI~WLiknhPe-L~D~QI~KLiGTTK~TI~sIRd  139 (192)
                      .++.|+-.|+-+ ++-.++++-.|.+..++..+=.
T Consensus         9 ~v~~~i~~~~~~~~sl~~la~~~~~s~~~l~r~fk   43 (108)
T 3oou_A            9 NVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQ   43 (108)
T ss_dssp             HHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999998558999999999998929999999999


No 33 
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A
Probab=28.58  E-value=16  Score=17.66  Aligned_cols=33  Identities=18%  Similarity=0.197  Sum_probs=28.1

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf             999999842455842434664387589999962
Q gi|254780800|r  107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN  139 (192)
Q Consensus       107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd  139 (192)
                      .|+..|.+++.++-++|++.+|.+++||..+=+
T Consensus        40 ~vL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~   72 (140)
T 3hsr_A           40 IVLMAIENDEKLNIKKLGERVFLDSGTLTPLLK   72 (140)
T ss_dssp             HHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             999999867998999999998978647999999


No 34 
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=28.13  E-value=31  Score=16.02  Aligned_cols=34  Identities=12%  Similarity=0.143  Sum_probs=28.8

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf             9999998424558424346643875899999628
Q gi|254780800|r  107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR  140 (192)
Q Consensus       107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR  140 (192)
                      .|+..+-.+|.++-++|++..+-+|+||..+-++
T Consensus        47 ~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~v~~   80 (155)
T 3cdh_A           47 RVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQ   80 (155)
T ss_dssp             HHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             9999998579969999999989699889999999


No 35 
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=27.71  E-value=36  Score=15.57  Aligned_cols=33  Identities=18%  Similarity=0.276  Sum_probs=23.1

Q ss_pred             HHHHHHHHCCC--CCHHHHHHHHCCCHHHHHHHHC
Q ss_conf             99999984245--5842434664387589999962
Q gi|254780800|r  107 AILWLIRNYPR--LKDAQISHLVGTTGSTIEQIRN  139 (192)
Q Consensus       107 AI~WLiknhPe--L~D~QI~KLiGTTK~TI~sIRd  139 (192)
                      .++..|-++|+  ++-++|++..|.+++||..+=+
T Consensus        45 ~vL~~l~~~~~~~~t~~eLa~~l~i~~stvs~~v~   79 (189)
T 3nqo_A           45 MTILSILHLPEEETTLNNIARKMGTSKQNINRLVA   79 (189)
T ss_dssp             HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             99999984789990999999998968869999999


No 36 
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} SCOP: a.4.5.50
Probab=27.63  E-value=36  Score=15.56  Aligned_cols=31  Identities=10%  Similarity=0.220  Sum_probs=24.7

Q ss_pred             HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf             9999984245584243466438758999996
Q gi|254780800|r  108 ILWLIRNYPRLKDAQISHLVGTTGSTIEQIR  138 (192)
Q Consensus       108 I~WLiknhPeL~D~QI~KLiGTTK~TI~sIR  138 (192)
                      +.-|++.+..++-++|++.+|-+++||..+=
T Consensus        27 L~~L~~~~~~~t~~eia~~~~~~~~tvs~~l   57 (109)
T 2d1h_A           27 LLKMVEIEKPITSEELADIFKLSKTTVENSL   57 (109)
T ss_dssp             HHHHHHHCSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             9999975989899999999897885899999


No 37 
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=26.91  E-value=29  Score=16.16  Aligned_cols=29  Identities=7%  Similarity=0.137  Sum_probs=14.2

Q ss_pred             HHHHHC--CCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf             999842--45584243466438758999996
Q gi|254780800|r  110 WLIRNY--PRLKDAQISHLVGTTGSTIEQIR  138 (192)
Q Consensus       110 WLiknh--PeL~D~QI~KLiGTTK~TI~sIR  138 (192)
                      |+-+||  |+++-.++++-+|.+..++..+=
T Consensus        10 ~I~~~~~~~~l~l~~lA~~~~~s~~~l~r~f   40 (103)
T 3lsg_A           10 IIEESYTDSQFTLSVLSEKLDLSSGYLSIMF   40 (103)
T ss_dssp             HHHHHTTCTTCCHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             9997667999899999999892999999999


No 38 
>1q20_A SULT2B1B, sulfotransferase family, cytosolic, 2B, member 1 isoform B; pregnenolone, cholesterol, PAP; HET: A3P PLO; 2.30A {Homo sapiens} SCOP: c.37.1.5 PDB: 1q1z_A* 1q22_A*
Probab=26.48  E-value=15  Score=17.89  Aligned_cols=13  Identities=8%  Similarity=0.164  Sum_probs=6.7

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             8999999999973
Q gi|254780800|r  160 AQIDLDREIEKCS  172 (192)
Q Consensus       160 sQ~dLd~av~KA~  172 (192)
                      +...++.++++.+
T Consensus       220 ~~~~i~~i~~~~s  232 (299)
T 1q20_A          220 GKEALGSVVAHST  232 (299)
T ss_dssp             CHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHH
T ss_conf             8999999998745


No 39 
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=25.47  E-value=40  Score=15.32  Aligned_cols=34  Identities=9%  Similarity=0.185  Sum_probs=29.2

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf             7999999842455842434664387589999962
Q gi|254780800|r  106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN  139 (192)
Q Consensus       106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd  139 (192)
                      -.|++.|..+|.++-++|++..|.|++|+..+=+
T Consensus        52 ~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~   85 (162)
T 2fa5_A           52 WRVITILALYPGSSASEVSDRTAMDKVAVSRAVA   85 (162)
T ss_dssp             HHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9999999867998999999997878715999999


No 40 
>2reo_A Putative sulfotransferase 1C3; sulfate conjugation, PAP, structural genomics consortium, SGC, alternative splicing, cytoplasm, polymorphism; HET: A3P; 2.65A {Homo sapiens} PDB: 2h8k_A*
Probab=25.23  E-value=16  Score=17.66  Aligned_cols=13  Identities=23%  Similarity=0.159  Sum_probs=5.8

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             8999999999973
Q gi|254780800|r  160 AQIDLDREIEKCS  172 (192)
Q Consensus       160 sQ~dLd~av~KA~  172 (192)
                      +...++++++++.
T Consensus       226 ~~~~i~~iv~~~s  238 (305)
T 2reo_A          226 SEEILNKIIYHTS  238 (305)
T ss_dssp             CHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHCC
T ss_conf             6789999999767


No 41 
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=25.20  E-value=40  Score=15.29  Aligned_cols=23  Identities=13%  Similarity=0.241  Sum_probs=11.1

Q ss_pred             CCCCCCCCHHHH-CCCHHHHHHHH
Q ss_conf             355653420331-15717999999
Q gi|254780800|r   90 KKKKRYTPVSKR-QDRPNAILWLI  112 (192)
Q Consensus        90 ~Kg~kYTPlSkR-qDkPdAI~WLi  112 (192)
                      ..||-+..++.| ...+++..||.
T Consensus        20 g~gP~~~~i~~~~~~~~~~~~~l~   43 (81)
T 1a56_A           20 VVGPALKDIAAKYADKDDAATYLA   43 (81)
T ss_dssp             SSSCCHHHHHHHHTTSSSHHHHHH
T ss_pred             CCCCCCHHHHHHCCCCCHHHHHHH
T ss_conf             889884667765157611789999


No 42 
>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12}
Probab=25.19  E-value=40  Score=15.29  Aligned_cols=30  Identities=20%  Similarity=0.413  Sum_probs=25.9

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             999999842455842434664387589999
Q gi|254780800|r  107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQ  136 (192)
Q Consensus       107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~s  136 (192)
                      .|++++...|+++-++|+...|.+.+||..
T Consensus        28 ~Il~~L~~~~~~~v~eLa~~l~~s~stvS~   57 (99)
T 3cuo_A           28 LILCMLSGSPGTSAGELTRITGLSASATSQ   57 (99)
T ss_dssp             HHHHHHTTCCSEEHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHHCCCCEEHHHHHHHHCCCHHHHHH
T ss_conf             999998589990799977455859879999


No 43 
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=24.41  E-value=35  Score=15.64  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=17.8

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             32256489999999999730121
Q gi|254780800|r  154 VTLGLCAQIDLDREIEKCSKNTE  176 (192)
Q Consensus       154 V~LGLCsQ~dLd~av~KA~~~~~  176 (192)
                      +.+-|-+|.|||+||+--.+...
T Consensus        54 L~IPL~~Q~DLDkAvellDrs~~   76 (103)
T 2cu1_A           54 LVIPLTTQDDLDKAVELLDRSIH   76 (103)
T ss_dssp             SCEECCSHHHHHHHHHHHHHCSS
T ss_pred             EEEECCCHHHHHHHHHHHCCCCC
T ss_conf             78863667889999998705866


No 44 
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=24.39  E-value=32  Score=15.87  Aligned_cols=33  Identities=21%  Similarity=0.320  Sum_probs=23.9

Q ss_pred             HHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHH
Q ss_conf             799999984245-584243466438758999996
Q gi|254780800|r  106 NAILWLIRNYPR-LKDAQISHLVGTTGSTIEQIR  138 (192)
Q Consensus       106 dAI~WLiknhPe-L~D~QI~KLiGTTK~TI~sIR  138 (192)
                      .++.|+-.|+.+ ++-.++++.+|.+..++...=
T Consensus        11 ~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~f   44 (113)
T 3oio_A           11 EAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLF   44 (113)
T ss_dssp             HHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             9999999755899999999999891999999999


No 45 
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=23.86  E-value=32  Score=15.91  Aligned_cols=34  Identities=6%  Similarity=0.095  Sum_probs=25.1

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf             7999999842455842434664387589999962
Q gi|254780800|r  106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN  139 (192)
Q Consensus       106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd  139 (192)
                      -.++..|..+|.++-++|++..|.++.+|..+=+
T Consensus        40 ~~vL~~i~~~~~~t~~~la~~l~~~~~~vs~~l~   73 (142)
T 2bv6_A           40 FLVLTILWDESPVNVKKVVTELALDTGTVSPLLK   73 (142)
T ss_dssp             HHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9999999977998999999998979879999999


No 46 
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50
Probab=23.57  E-value=43  Score=15.10  Aligned_cols=33  Identities=9%  Similarity=0.106  Sum_probs=24.3

Q ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf             999999842455842434664387589999962
Q gi|254780800|r  107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN  139 (192)
Q Consensus       107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd  139 (192)
                      .|+-.+..++.++-.+|++-+|.+++||..+-+
T Consensus        24 ~v~~~L~~~~~~t~~eia~~~~~~~~~v~~~l~   56 (109)
T 1sfx_A           24 RIYSLLLERGGMRVSEIARELDLSARFVRDRLK   56 (109)
T ss_dssp             HHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf             999999804888799999997567018999999


No 47 
>1q44_A RARO47;, steroid sulphotransferase; APO, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.90A {Arabidopsis thaliana} SCOP: c.37.1.5 PDB: 2q3m_A
Probab=23.46  E-value=19  Score=17.25  Aligned_cols=13  Identities=15%  Similarity=0.432  Sum_probs=6.6

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             8999999999973
Q gi|254780800|r  160 AQIDLDREIEKCS  172 (192)
Q Consensus       160 sQ~dLd~av~KA~  172 (192)
                      .+.+++++|++.+
T Consensus       252 d~~~i~~iv~~~S  264 (326)
T 1q44_A          252 EEEEVREIVKLCS  264 (326)
T ss_dssp             CHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHCC
T ss_conf             0578999999668


No 48 
>2zpt_X Tyrosine-ester sulfotransferase; SULT1D1, catecholamine, sulfonation; HET: A3P GOL; 1.15A {Mus musculus} PDB: 2zvp_X* 2zvq_X* 2zyt_X* 2zyu_X* 2zyv_X* 2zyw_X*
Probab=23.43  E-value=19  Score=17.32  Aligned_cols=12  Identities=8%  Similarity=0.072  Sum_probs=4.9

Q ss_pred             CHHHHHHHHHHH
Q ss_conf             899999999997
Q gi|254780800|r  160 AQIDLDREIEKC  171 (192)
Q Consensus       160 sQ~dLd~av~KA  171 (192)
                      +...|+++++.+
T Consensus       216 ~~~~l~~~v~~~  227 (295)
T 2zpt_X          216 PEEILNKILYHS  227 (295)
T ss_dssp             CHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHC
T ss_conf             299999999975


No 49 
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, alternative splicing, DNA-binding, nucleus; HET: DNA; 2.75A {Mus musculus} PDB: 2yul_A
Probab=22.87  E-value=30  Score=16.11  Aligned_cols=20  Identities=30%  Similarity=0.677  Sum_probs=17.1

Q ss_pred             HHHHCCCCCHHHHHHHHCCC
Q ss_conf             99842455842434664387
Q gi|254780800|r  111 LIRNYPRLKDAQISHLVGTT  130 (192)
Q Consensus       111 LiknhPeL~D~QI~KLiGTT  130 (192)
                      +.+.||.++.++|+|++|.-
T Consensus        25 i~~~~P~~~~~eisk~lg~~   44 (83)
T 3f27_D           25 LAQQNPDLHNAELSKMLGKS   44 (83)
T ss_dssp             HHHHCSSSCHHHHHHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHHHH
T ss_conf             99886589999999999999


No 50 
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=22.71  E-value=45  Score=15.00  Aligned_cols=34  Identities=15%  Similarity=0.304  Sum_probs=26.9

Q ss_pred             HHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf             9999998424-558424346643875899999628
Q gi|254780800|r  107 AILWLIRNYP-RLKDAQISHLVGTTGSTIEQIRNR  140 (192)
Q Consensus       107 AI~WLiknhP-eL~D~QI~KLiGTTK~TI~sIRdR  140 (192)
                      .|++.|-.|| .++-++|++..|.+++||..+=++
T Consensus        41 ~iL~~l~~~~~~~t~~eL~~~~~~~~~~vs~~i~~   75 (146)
T 2fbh_A           41 LVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDG   75 (146)
T ss_dssp             HHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99999986799999999999989689899999999


No 51 
>3mgb_A TEG12; sulfotransferase, glycopeptide, transferase-anti complex; HET: GHP 3MY 3FG OMY PAP; 2.04A {Uncultured soil bacterium} PDB: 3mgc_A* 3mg9_A*
Probab=22.25  E-value=20  Score=17.15  Aligned_cols=13  Identities=15%  Similarity=0.291  Sum_probs=6.2

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             8999999999973
Q gi|254780800|r  160 AQIDLDREIEKCS  172 (192)
Q Consensus       160 sQ~dLd~av~KA~  172 (192)
                      +...++.+|++++
T Consensus       226 ~~~~i~~~v~~~s  238 (319)
T 3mgb_A          226 DIEDIRRAVAAST  238 (319)
T ss_dssp             CHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHCC
T ss_conf             9999999999789


No 52 
>2ov8_A STAL; sulfotransferase, structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, unknown function; 2.58A {Streptomyces toyocaensis} PDB: 2ovb_A 2ovf_A*
Probab=21.91  E-value=21  Score=17.03  Aligned_cols=12  Identities=33%  Similarity=0.899  Sum_probs=7.9

Q ss_pred             CCCCHHHH--HHHH
Q ss_conf             88613454--3024
Q gi|254780800|r    5 PLMPKASA--VWLI   16 (192)
Q Consensus         5 pLMPkATA--vWLv   16 (192)
                      -|+|+.+-  ||||
T Consensus        13 ~~~~~~~~~iifi~   26 (288)
T 2ov8_A           13 GLVPRGSHMMCWIA   26 (288)
T ss_dssp             --------CEEEEE
T ss_pred             CCCCCCCCCCEEEE
T ss_conf             76669999828997


No 53 
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=21.44  E-value=45  Score=15.01  Aligned_cols=35  Identities=17%  Similarity=0.203  Sum_probs=28.3

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf             79999998424558424346643875899999628
Q gi|254780800|r  106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR  140 (192)
Q Consensus       106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR  140 (192)
                      -.++..|..++.++-++|++.+|-++++|..+=++
T Consensus        40 ~~vL~~l~~~~~~t~~ela~~~~~~~~~vs~~l~~   74 (155)
T 1s3j_A           40 LFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADR   74 (155)
T ss_dssp             HHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             99999999869979999999989699899999999


No 54 
>2gwh_A Sulfotransferase 1C2; sulfate conjugation, pentachlorophenol, PAP, pesticide, structural genomics, structural genomics consortium, SGC; HET: A3P PCI; 1.80A {Homo sapiens} PDB: 2ad1_A*
Probab=21.35  E-value=21  Score=16.97  Aligned_cols=13  Identities=23%  Similarity=0.192  Sum_probs=6.3

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             8999999999973
Q gi|254780800|r  160 AQIDLDREIEKCS  172 (192)
Q Consensus       160 sQ~dLd~av~KA~  172 (192)
                      +...|+++++.++
T Consensus       219 ~~~~i~~iv~~~s  231 (298)
T 2gwh_A          219 DDKVLDKIVHYTS  231 (298)
T ss_dssp             CHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHCC
T ss_conf             7689999999777


No 55 
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=21.31  E-value=48  Score=14.82  Aligned_cols=38  Identities=8%  Similarity=0.098  Sum_probs=31.7

Q ss_pred             HHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf             03311571799999984245584243466438758999996
Q gi|254780800|r   98 VSKRQDRPNAILWLIRNYPRLKDAQISHLVGTTGSTIEQIR  138 (192)
Q Consensus        98 lSkRqDkPdAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIR  138 (192)
                      +|..|=   .|+..+..+|.++-++|++.+|.+++|+..+=
T Consensus       150 ls~~~~---~iL~~L~~~~~~s~~ela~~l~~s~~tv~r~l  187 (244)
T 2wte_A          150 YSREEM---KLLNVLYETKGTGITELAKMLDKSEKTLINKI  187 (244)
T ss_dssp             CCHHHH---HHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHH
T ss_pred             CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             999999---99999997799899999999797988999999


No 56 
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=21.27  E-value=48  Score=14.82  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=17.3

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             3225648999999999973012
Q gi|254780800|r  154 VTLGLCAQIDLDREIEKCSKNT  175 (192)
Q Consensus       154 V~LGLCsQ~dLd~av~KA~~~~  175 (192)
                      +..-|-+|.|||+||+--.++.
T Consensus        50 L~IPl~~Q~DLDkAvelLDrs~   71 (94)
T 2jrh_A           50 LSILLKNQDDLDKAIDILDRSS   71 (94)
T ss_dssp             CEEECCSHHHHHHHHHHHHHST
T ss_pred             EEEECCCHHHHHHHHHHHHCCC
T ss_conf             8886367788999999870596


No 57 
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=21.04  E-value=49  Score=14.79  Aligned_cols=34  Identities=9%  Similarity=-0.001  Sum_probs=28.6

Q ss_pred             HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf             9999984245584243466438758999996288
Q gi|254780800|r  108 ILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNRT  141 (192)
Q Consensus       108 I~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdRt  141 (192)
                      -.+.++++-+++-++|+...|.+.+||.+.--|.
T Consensus        32 ~v~~l~~~e~ls~~EIA~~lgiS~~aV~~~l~RA   65 (113)
T 1xsv_A           32 NYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRT   65 (113)
T ss_dssp             HHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             9999999919999999999896999999999999


No 58 
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 1o4x_B
Probab=20.97  E-value=28  Score=16.22  Aligned_cols=20  Identities=20%  Similarity=0.587  Sum_probs=16.6

Q ss_pred             HHHHCCCCCHHHHHHHHCCC
Q ss_conf             99842455842434664387
Q gi|254780800|r  111 LIRNYPRLKDAQISHLVGTT  130 (192)
Q Consensus       111 LiknhPeL~D~QI~KLiGTT  130 (192)
                      |...+|.++-++|+|++|.-
T Consensus        21 l~~~~p~~~~~eisk~~g~~   40 (80)
T 1gt0_D           21 MAQENPKMHNSEISKRLGAE   40 (80)
T ss_dssp             HHTTSTTSCHHHHHHHHHHH
T ss_pred             HHHHCCCCCHHHHHHHHHHH
T ss_conf             99987899999999999999


No 59 
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens} SCOP: c.37.1.5
Probab=20.81  E-value=23  Score=16.81  Aligned_cols=10  Identities=40%  Similarity=1.122  Sum_probs=5.4

Q ss_pred             CCHHHHHHHH
Q ss_conf             6134543024
Q gi|254780800|r    7 MPKASAVWLI   16 (192)
Q Consensus         7 MPkATAvWLv   16 (192)
                      |||.---||-
T Consensus        53 yPKSGTTWlr   62 (350)
T 1q1q_A           53 YPKSGTTWMI   62 (350)
T ss_dssp             CTTSSHHHHH
T ss_pred             CCCCHHHHHH
T ss_conf             9986699999


No 60 
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK5, PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain, MAP3K2; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=20.24  E-value=48  Score=14.84  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=17.4

Q ss_pred             HHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             3225648999999999973012
Q gi|254780800|r  154 VTLGLCAQIDLDREIEKCSKNT  175 (192)
Q Consensus       154 V~LGLCsQ~dLd~av~KA~~~~  175 (192)
                      +..-|-+|.|||+||+--.++.
T Consensus        66 L~IPl~~Q~DLDkAvellDrs~   87 (100)
T 2npt_B           66 LVIPLTTQDDLDKAVELLDRSI   87 (100)
T ss_dssp             EEEECCCHHHHHHHHHHHHHCS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC
T ss_conf             7886356788999999871596


No 61 
>1ls6_A ARYL sulfotransferase; SULT 1A1, PAP, P-nitrophenol, positive cooperativity, two substrate binding sites; HET: A3P NPO; 1.90A {Homo sapiens} SCOP: c.37.1.5 PDB: 2d06_A* 1z28_A* 1z29_A* 1cjm_A 2a3r_A*
Probab=20.08  E-value=24  Score=16.71  Aligned_cols=13  Identities=15%  Similarity=0.199  Sum_probs=7.5

Q ss_pred             CHHHHHHHHHHHH
Q ss_conf             8999999999973
Q gi|254780800|r  160 AQIDLDREIEKCS  172 (192)
Q Consensus       160 sQ~dLd~av~KA~  172 (192)
                      +...++.++++++
T Consensus       216 ~~~~i~~~v~~~s  228 (295)
T 1ls6_A          216 PEETVDFMVQHTS  228 (295)
T ss_dssp             CHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHCC
T ss_conf             5889999999677


Done!