Query gi|254780800|ref|YP_003065213.1| hypothetical protein CLIBASIA_03455 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 192 No_of_seqs 115 out of 360 Neff 3.3 Searched_HMMs 23785 Date Mon May 30 12:39:38 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780800.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2qww_A Transcriptional regulat 56.3 6.7 0.00028 20.0 2.8 35 106-140 44-78 (154) 2 2a61_A Transcriptional regulat 55.8 9.4 0.0004 19.1 3.5 46 107-152 37-85 (145) 3 2fxa_A Protease production reg 53.7 6.4 0.00027 20.1 2.4 34 107-140 52-85 (207) 4 1j5y_A Transcriptional regulat 52.8 9.1 0.00038 19.2 3.0 21 14-34 29-50 (187) 5 3lmm_A Uncharacterized protein 52.1 1.7 7.1E-05 23.7 -0.8 105 15-135 439-548 (583) 6 1jgs_A Multiple antibiotic res 51.6 13 0.00055 18.3 3.7 47 107-153 38-87 (138) 7 2hoe_A N-acetylglucosamine kin 51.2 6.3 0.00027 20.2 2.0 28 21-48 34-61 (380) 8 2nyx_A Probable transcriptiona 50.7 8.7 0.00037 19.3 2.6 34 106-139 48-81 (168) 9 3bdd_A Regulatory protein MARR 50.4 11 0.00047 18.7 3.2 35 106-140 34-68 (142) 10 2nnn_A Probable transcriptiona 49.9 11 0.00047 18.7 3.1 33 107-139 42-74 (140) 11 3nrv_A Putative transcriptiona 49.6 15 0.00063 17.9 3.7 39 98-139 38-76 (148) 12 3k0l_A Repressor protein; heli 45.6 13 0.00053 18.4 2.8 48 106-153 49-99 (162) 13 2eth_A Transcriptional regulat 44.5 18 0.00075 17.4 3.4 35 106-140 47-81 (154) 14 3cjn_A Transcriptional regulat 43.6 13 0.00055 18.3 2.6 34 107-140 56-89 (162) 15 1ub9_A Hypothetical protein PH 41.5 16 0.00068 17.7 2.8 34 106-139 19-52 (100) 16 2o38_A Hypothetical protein; a 39.5 23 0.00097 16.8 3.6 71 60-145 11-81 (120) 17 3bja_A Transcriptional regulat 38.9 9.6 0.0004 19.1 1.3 34 106-139 36-69 (139) 18 3bpv_A Transcriptional regulat 38.5 24 0.001 16.7 3.6 33 107-139 33-65 (138) 19 2pex_A Transcriptional regulat 38.2 18 0.00075 17.5 2.6 33 107-139 51-83 (153) 20 3dn7_A Cyclic nucleotide bindi 37.8 5.6 0.00023 20.5 0.0 86 52-140 101-191 (194) 21 1z91_A Organic hydroperoxide r 37.1 14 0.00061 18.0 2.0 34 106-139 43-76 (147) 22 1zd1_A Sulfotransferase 4A1; S 35.7 8.5 0.00036 19.4 0.7 13 160-172 219-231 (284) 23 2rdp_A Putative transcriptiona 34.3 28 0.0012 16.3 3.2 34 107-140 46-79 (150) 24 3g3z_A NMB1585, transcriptiona 34.2 28 0.0012 16.2 3.7 33 107-139 35-67 (145) 25 3bj6_A Transcriptional regulat 33.3 26 0.0011 16.5 2.8 34 106-139 43-76 (152) 26 2fbi_A Probable transcriptiona 33.3 23 0.00096 16.8 2.5 35 106-140 39-73 (142) 27 1j1v_A Chromosomal replication 33.2 17 0.00072 17.5 1.9 30 107-136 36-66 (94) 28 2hr3_A Probable transcriptiona 31.9 31 0.0013 16.0 3.2 46 107-152 39-88 (147) 29 3kp7_A Transcriptional regulat 31.6 26 0.0011 16.4 2.6 34 106-140 41-74 (151) 30 3ech_A MEXR, multidrug resista 30.2 27 0.0011 16.4 2.5 35 106-140 40-74 (142) 31 3e6m_A MARR family transcripti 28.9 26 0.0011 16.5 2.2 46 107-152 57-105 (161) 32 3oou_A LIN2118 protein; protei 28.7 24 0.001 16.6 2.0 34 106-139 9-43 (108) 33 3hsr_A HTH-type transcriptiona 28.6 16 0.00069 17.7 1.2 33 107-139 40-72 (140) 34 3cdh_A Transcriptional regulat 28.1 31 0.0013 16.0 2.5 34 107-140 47-80 (155) 35 3nqo_A MARR-family transcripti 27.7 36 0.0015 15.6 3.2 33 107-139 45-79 (189) 36 2d1h_A ST1889, 109AA long hypo 27.6 36 0.0015 15.6 3.4 31 108-138 27-57 (109) 37 3lsg_A Two-component response 26.9 29 0.0012 16.2 2.2 29 110-138 10-40 (103) 38 1q20_A SULT2B1B, sulfotransfer 26.5 15 0.00063 17.9 0.7 13 160-172 220-232 (299) 39 2fa5_A Transcriptional regulat 25.5 40 0.0017 15.3 3.7 34 106-139 52-85 (162) 40 2reo_A Putative sulfotransfera 25.2 16 0.00069 17.7 0.7 13 160-172 226-238 (305) 41 1a56_A C-551, ferricytochrome 25.2 40 0.0017 15.3 2.7 23 90-112 20-43 (81) 42 3cuo_A Uncharacterized HTH-typ 25.2 40 0.0017 15.3 2.7 30 107-136 28-57 (99) 43 2cu1_A Mitogen-activated prote 24.4 35 0.0015 15.6 2.2 23 154-176 54-76 (103) 44 3oio_A Transcriptional regulat 24.4 32 0.0014 15.9 2.0 33 106-138 11-44 (113) 45 2bv6_A MGRA, HTH-type transcri 23.9 32 0.0013 15.9 1.9 34 106-139 40-73 (142) 46 1sfx_A Conserved hypothetical 23.6 43 0.0018 15.1 3.2 33 107-139 24-56 (109) 47 1q44_A RARO47;, steroid sulpho 23.5 19 0.00081 17.2 0.7 13 160-172 252-264 (326) 48 2zpt_X Tyrosine-ester sulfotra 23.4 19 0.00079 17.3 0.7 12 160-171 216-227 (295) 49 3f27_D Transcription factor SO 22.9 30 0.0012 16.1 1.6 20 111-130 25-44 (83) 50 2fbh_A Transcriptional regulat 22.7 45 0.0019 15.0 3.3 34 107-140 41-75 (146) 51 3mgb_A TEG12; sulfotransferase 22.3 20 0.00084 17.1 0.6 13 160-172 226-238 (319) 52 2ov8_A STAL; sulfotransferase, 21.9 21 0.00088 17.0 0.7 12 5-16 13-26 (288) 53 1s3j_A YUSO protein; structura 21.4 45 0.0019 15.0 2.3 35 106-140 40-74 (155) 54 2gwh_A Sulfotransferase 1C2; s 21.3 21 0.0009 17.0 0.6 13 160-172 219-231 (298) 55 2wte_A CSA3; antiviral protein 21.3 48 0.002 14.8 3.6 38 98-138 150-187 (244) 56 2jrh_A Mitogen-activated prote 21.3 48 0.002 14.8 2.4 22 154-175 50-71 (94) 57 1xsv_A Hypothetical UPF0122 pr 21.0 49 0.002 14.8 3.3 34 108-141 32-65 (113) 58 1gt0_D Transcription factor SO 21.0 28 0.0012 16.2 1.2 20 111-130 21-40 (80) 59 1q1q_A SULT2B1A, sulfotransfer 20.8 23 0.00095 16.8 0.7 10 7-16 53-62 (350) 60 2npt_B Mitogen-activated prote 20.2 48 0.002 14.8 2.2 22 154-175 66-87 (100) 61 1ls6_A ARYL sulfotransferase; 20.1 24 0.00099 16.7 0.6 13 160-172 216-228 (295) No 1 >2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} Probab=56.28 E-value=6.7 Score=20.04 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=30.5 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 79999998424558424346643875899999628 Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR 140 (192) Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR 140 (192) -.+++.|..+|.++-++|++..|.+++||..+=++ T Consensus 44 ~~vL~~L~~~~~~t~~~La~~l~~~~~tvs~~v~~ 78 (154) T 2qww_A 44 LAMINVIYSTPGISVADLTKRLIITGSSAAANVDG 78 (154) T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999779989999999979787579999999 No 2 >2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 Probab=55.84 E-value=9.4 Score=19.14 Aligned_cols=46 Identities=26% Similarity=0.257 Sum_probs=34.6 Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC---CCCCCCCCCCCC Q ss_conf 9999998424558424346643875899999628---887701268377 Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR---THWNTANLVPMD 152 (192) Q Consensus 107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR---tHWN~~Ni~P~D 152 (192) .+++.|.+||.++-++|++.+|.++++|..+=++ -.|=...-.|.| T Consensus 37 ~vL~~i~~~~~~t~~ela~~~~~~~~~vs~~v~~L~~~gli~~~~~~~D 85 (145) T 2a61_A 37 DILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPAD 85 (145) T ss_dssp HHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTE T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 9999998779989999999989798789999999852893799675889 No 3 >2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 Probab=53.74 E-value=6.4 Score=20.14 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=24.2 Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 9999998424558424346643875899999628 Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR 140 (192) Q Consensus 107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR 140 (192) .|+|+|.+++.++-++|++..|.+++|+..+=+| T Consensus 52 ~iL~~L~~~~~~s~~ela~~~~~~~stvs~~i~~ 85 (207) T 2fxa_A 52 HILWIAYQLNGASISEIAKFGVMHVSTAFNFSKK 85 (207) T ss_dssp HHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999999769949999999988698799999999 No 4 >1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1 Probab=52.81 E-value=9.1 Score=19.23 Aligned_cols=21 Identities=24% Similarity=0.078 Sum_probs=14.0 Q ss_pred HHHHH-CCCCHHHHHHHHCCCH Q ss_conf 02420-4347999996708712 Q gi|254780800|r 14 WLIDN-TSLSFDQIAEFCGLHL 34 (192) Q Consensus 14 WLvdN-T~LtF~QIa~FC~lH~ 34 (192) +|.++ ..+|-.++|+-+|.-. T Consensus 29 ~L~~~~~~vs~~eLa~~l~vS~ 50 (187) T 1j5y_A 29 ILERSKEPVSGAQLAEELSVSR 50 (187) T ss_dssp HHHHCSSCBCHHHHHHHHTSCH T ss_pred HHHHCCCCCCHHHHHHHHCCCH T ss_conf 9998599676999999979899 No 5 >3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} Probab=52.09 E-value=1.7 Score=23.68 Aligned_cols=105 Identities=15% Similarity=0.146 Sum_probs=50.6 Q ss_pred HHHHCCCCHHHHHHHHCCCHHHEEEECCHHHHCCCCCCCCCCCC-----CCCHHHHHHHHHCCCCCEECCCCCCCCCCCC Q ss_conf 24204347999996708712051111241463896114740127-----8489999997616487704036643344224 Q gi|254780800|r 15 LIDNTSLSFDQIAEFCGLHLLEVMAIADGESLQGIKGFNLISSG-----QLSAEEIALGEKDKNYKLKISKPKSYILEST 89 (192) Q Consensus 15 LvdNT~LtF~QIa~FC~lH~LEVq~IADGeva~gi~g~dPi~~g-----qLt~eEI~~ce~d~~~~L~l~~~~~~~~~~~ 89 (192) |.+|-.+|..++++.|++..-+++.+-+.-+..|+...-.+ .| .|+..--+...+-. ... T Consensus 439 l~~~~~it~~ela~~l~~s~~~~~~~L~~L~~~glie~~~~-~g~~~~y~ls~~~~~~~~~~~--------------~~~ 503 (583) T 3lmm_A 439 LFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLI-IAHDGVWLLGNACREILRKVE--------------PSP 503 (583) T ss_dssp HHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESE-EEETTEEEECHHHHHHHTSCC----------------- T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCC-CCCCCEEEECHHHHHHHHCCC--------------CCC T ss_conf 98688878999998868899999999999997797332455-665875852688876520100--------------121 Q ss_pred CCCCCCCCHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH Q ss_conf 3556534203311571799999984245584243466438758999 Q gi|254780800|r 90 KKKKRYTPVSKRQDRPNAILWLIRNYPRLKDAQISHLVGTTGSTIE 135 (192) Q Consensus 90 ~Kg~kYTPlSkRqDkPdAI~WLiknhPeL~D~QI~KLiGTTK~TI~ 135 (192) ....+|.+.+ .+.-+..|+.+++.|+.++-.+|+++.|-++.|+. T Consensus 504 ~~~~~~~~~~-~~~~~~~Il~~l~~~g~it~~ei~~llgls~~~v~ 548 (583) T 3lmm_A 504 FSPVRYLSTD-QAELTNAAMLWLSEVGDLATSDLMAMCGVSRGTAK 548 (583) T ss_dssp ---------------------------------------------- T ss_pred CCCCCCCCCC-HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH T ss_conf 1100246767-77899999999997599389999999787999999 No 6 >1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 Probab=51.62 E-value=13 Score=18.26 Aligned_cols=47 Identities=13% Similarity=0.222 Sum_probs=34.6 Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC---CCCCCCCCCCCCCC Q ss_conf 999999842455842434664387589999962---88877012683773 Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN---RTHWNTANLVPMDP 153 (192) Q Consensus 107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd---RtHWN~~Ni~P~DP 153 (192) .+++.+.++|.++-.+|++..|.+++||..+=+ +.-|=.---.|.|- T Consensus 38 ~vL~~l~~~~~~t~~ela~~~~~~~~~vs~~l~~L~~~g~i~r~~~~~D~ 87 (138) T 1jgs_A 38 KVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDK 87 (138) T ss_dssp HHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCS T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCC T ss_conf 99999987799899999999897887999999999868977985568888 No 7 >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 Probab=51.20 E-value=6.3 Score=20.19 Aligned_cols=28 Identities=32% Similarity=0.138 Sum_probs=11.1 Q ss_pred CCHHHHHHHHCCCHHHEEEECCHHHHCC Q ss_conf 4799999670871205111124146389 Q gi|254780800|r 21 LSFDQIAEFCGLHLLEVMAIADGESLQG 48 (192) Q Consensus 21 LtF~QIa~FC~lH~LEVq~IADGeva~g 48 (192) +|-.+||+-+||..=-|-.|-+.=...| T Consensus 34 iSR~eLa~~tgLS~~Tvs~iv~~L~~~g 61 (380) T 2hoe_A 34 VSRVELAEELGLTKTTVGEIAKIFLEKG 61 (380) T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCC T ss_conf 5999999888959999999999999889 No 8 >2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV} Probab=50.71 E-value=8.7 Score=19.34 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=30.6 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 7999999842455842434664387589999962 Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN 139 (192) Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd 139 (192) -.|+++|..+|.++-++|++..|-++++|..+=+ T Consensus 48 ~~vL~~l~~~~~~~~~eLa~~l~i~~~~vs~~l~ 81 (168) T 2nyx_A 48 FRTLVILSNHGPINLATLATLLGVQPSATGRMVD 81 (168) T ss_dssp HHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999999967996999999998969889999999 No 9 >3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis 89} Probab=50.42 E-value=11 Score=18.66 Aligned_cols=35 Identities=9% Similarity=0.065 Sum_probs=30.4 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 79999998424558424346643875899999628 Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR 140 (192) Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR 140 (192) -.|++.+.++|.++-++|++..|-+|+|+..+=++ T Consensus 34 ~~vL~~l~~~~~~t~~~la~~l~i~~~tvs~~v~~ 68 (142) T 3bdd_A 34 YSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKL 68 (142) T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999998779989999999989698689999999 No 10 >2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} Probab=49.88 E-value=11 Score=18.66 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=29.6 Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 999999842455842434664387589999962 Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN 139 (192) Q Consensus 107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd 139 (192) .|++.|.++|+++-++|++..|-++.||..+=+ T Consensus 42 ~vL~~l~~~~~~t~~eLa~~~~~~~~~vs~~i~ 74 (140) T 2nnn_A 42 AALVRLGETGPCPQNQLGRLTAMDAATIKGVVE 74 (140) T ss_dssp HHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHH T ss_conf 999999987990999999987857352999999 No 11 >3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} Probab=49.61 E-value=15 Score=17.93 Aligned_cols=39 Identities=10% Similarity=0.187 Sum_probs=31.7 Q ss_pred HHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 033115717999999842455842434664387589999962 Q gi|254780800|r 98 VSKRQDRPNAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN 139 (192) Q Consensus 98 lSkRqDkPdAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd 139 (192) ++..|= .|++.+..+|.++-++|++..|.+|++|..+=+ T Consensus 38 lt~~q~---~vL~~L~~~~~~t~~~la~~l~i~~~~vsr~l~ 76 (148) T 3nrv_A 38 IGMTEW---RIISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148) T ss_dssp CCHHHH---HHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHH T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 899999---999999977997999999998969989999999 No 12 >3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} Probab=45.60 E-value=13 Score=18.36 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=36.3 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC---CCCCCCCCCCCCC Q ss_conf 79999998424558424346643875899999628---8877012683773 Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR---THWNTANLVPMDP 153 (192) Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR---tHWN~~Ni~P~DP 153 (192) -.|+..|.+||.++-++|++..+-+++||..+=+| .-|=.-.-.|.|- T Consensus 49 ~~vL~~l~~~~~~t~~~La~~l~~~~~~vs~~l~~L~~~gli~r~~~~~D~ 99 (162) T 3k0l_A 49 FTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHG 99 (162) T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSS T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCC T ss_conf 999999997799899999999896886999999999988997985279998 No 13 >2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 Probab=44.45 E-value=18 Score=17.44 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=29.1 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 79999998424558424346643875899999628 Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR 140 (192) Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR 140 (192) -.++..|..+|+++-++|++..|.+++|+..+=++ T Consensus 47 ~~vL~~l~~~~~~t~~eLa~~l~i~~~tvs~~i~~ 81 (154) T 2eth_A 47 LYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDS 81 (154) T ss_dssp HHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999869949999999989798899999999 No 14 >3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} Probab=43.60 E-value=13 Score=18.26 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=29.5 Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 9999998424558424346643875899999628 Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR 140 (192) Q Consensus 107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR 140 (192) -|++.|..+|.++-++|++..|-++++|..+=++ T Consensus 56 ~iL~~l~~~~~~t~~~La~~~~~~~~~vsr~v~~ 89 (162) T 3cjn_A 56 RALAILSAKDGLPIGTLGIFAVVEQSTLSRALDG 89 (162) T ss_dssp HHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999998479989999999989798899999999 No 15 >1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28 Probab=41.53 E-value=16 Score=17.71 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=29.3 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 7999999842455842434664387589999962 Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN 139 (192) Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd 139 (192) -.|..++..+++++-++|++.+|.+++|+...=+ T Consensus 19 ~~IL~~L~~~~~~t~~eLa~~l~is~~~vs~~l~ 52 (100) T 1ub9_A 19 LGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIR 52 (100) T ss_dssp HHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999998518998399999998919989999999 No 16 >2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.83A {Rhodopseudomonas palustris CGA009} SCOP: a.35.1.13 Probab=39.52 E-value=23 Score=16.76 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=47.7 Q ss_pred CCHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 48999999761648770403664334422435565342033115717999999842455842434664387589999962 Q gi|254780800|r 60 LSAEEIALGEKDKNYKLKISKPKSYILESTKKKKRYTPVSKRQDRPNAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN 139 (192) Q Consensus 60 Lt~eEI~~ce~d~~~~L~l~~~~~~~~~~~~Kg~kYTPlSkRqDkPdAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd 139 (192) -+..||++++.|.-+.|-+...+. +.-|..-=..|..++ ..-.|+..|.+++.|++.++|..+.+ T Consensus 11 ~~~~ei~~~sgNvf~DlG~~daee--------------l~~K~~L~~~I~~~i-~~~glTQ~eaA~~lGisq~~iS~l~~ 75 (120) T 2o38_A 11 STAAEITRGIGNVFADLGMPDAEE--------------RQTKLRLAYALNAVI-DRARLSQAAAAARLGINQPKVSALRN 75 (120) T ss_dssp -------------------CHHHH--------------HHHHHHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHT T ss_pred CCCEEEEECCCCHHHCCCCCCHHH--------------HHHHHHHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHC T ss_conf 763467878998101159896899--------------999999999999999-98699675565550888899899975 Q ss_pred CCCCCC Q ss_conf 888770 Q gi|254780800|r 140 RTHWNT 145 (192) Q Consensus 140 RtHWN~ 145 (192) ....|. T Consensus 76 Gk~~~~ 81 (120) T 2o38_A 76 YKLEGF 81 (120) T ss_dssp TCCTTC T ss_pred CCCCCC T ss_conf 886788 No 17 >3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987} Probab=38.86 E-value=9.6 Score=19.09 Aligned_cols=34 Identities=6% Similarity=0.164 Sum_probs=29.9 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 7999999842455842434664387589999962 Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN 139 (192) Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd 139 (192) -.|++.|..+|.++-++|++..|.+++|+..+-+ T Consensus 36 ~~vL~~l~~~~~~t~~~La~~l~~~~~tvs~~l~ 69 (139) T 3bja_A 36 FGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQ 69 (139) T ss_dssp HHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHH T ss_conf 9999999986998999998470868889999999 No 18 >3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* Probab=38.48 E-value=24 Score=16.66 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=28.0 Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 999999842455842434664387589999962 Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN 139 (192) Q Consensus 107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd 139 (192) .++..+-.||.++-++|++..|.+++||..+=+ T Consensus 33 ~vL~~i~~~~~~t~~eLa~~~~~~~~~vs~~v~ 65 (138) T 3bpv_A 33 ACLLRIHREPGIKQDELATFFHVDKGTIARTLR 65 (138) T ss_dssp HHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999999858997999999998979879999999 No 19 >2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A Probab=38.24 E-value=18 Score=17.45 Aligned_cols=33 Identities=6% Similarity=0.108 Sum_probs=29.0 Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 999999842455842434664387589999962 Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN 139 (192) Q Consensus 107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd 139 (192) .|+..|.+++.++-++|++.+|.+++||..+=+ T Consensus 51 ~vL~~l~~~~~~~~~eLa~~l~~~~~tvs~~v~ 83 (153) T 2pex_A 51 LVMLVLWETDERSVSEIGERLYLDSATLTPLLK 83 (153) T ss_dssp HHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999999847998999999998968868999999 No 20 >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, PSI-2, protein structure initiative; 1.80A {Cytophaga hutchinsonii atcc 33406} Probab=37.76 E-value=5.6 Score=20.52 Aligned_cols=86 Identities=8% Similarity=0.033 Sum_probs=44.8 Q ss_pred CCCCCCCCCCHHHHHH-HHHCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCC----CCHHHHHHH Q ss_conf 4740127848999999-76164877040366433442243556534203311571799999984245----584243466 Q gi|254780800|r 52 FNLISSGQLSAEEIAL-GEKDKNYKLKISKPKSYILESTKKKKRYTPVSKRQDRPNAILWLIRNYPR----LKDAQISHL 126 (192) Q Consensus 52 ~dPi~~gqLt~eEI~~-ce~d~~~~L~l~~~~~~~~~~~~Kg~kYTPlSkRqDkPdAI~WLiknhPe----L~D~QI~KL 126 (192) ..+..--.+.++...+ ++.+|.....+...-..... .-....-.....+-.+-++++++.+|+ ++-.+|+.+ T Consensus 101 ~~~~~v~~i~~~~~~~l~~~~~~~~~~~~~~l~~~~~---~~~~~~~~l~~~~~~~R~~~~l~~~~~i~~~~t~~~iA~~ 177 (194) T 3dn7_A 101 VENCELLSITYTEQENLFERIPALERYFRLVYQKSFA---AAQLRSKFQHMYSKEEQYHNFSSRFPEFIQRVPQYLLASY 177 (194) T ss_dssp SSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHHHHH---HHHHHHHHHHHC---------------------------- T ss_pred CCCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHH---HHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH T ss_conf 0067999982899999998699999999999985089---9999999974788999999999869253569799999999 Q ss_pred HCCCHHHHHHHHCC Q ss_conf 43875899999628 Q gi|254780800|r 127 VGTTGSTIEQIRNR 140 (192) Q Consensus 127 iGTTK~TI~sIRdR 140 (192) +|+|..|+.-||.+ T Consensus 178 lG~sr~tlSRi~k~ 191 (194) T 3dn7_A 178 LGFTPEYLSEIRKK 191 (194) T ss_dssp -------------- T ss_pred HCCCHHHHHHHHHH T ss_conf 79989999999998 No 21 >1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* Probab=37.10 E-value=14 Score=18.01 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=29.6 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 7999999842455842434664387589999962 Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN 139 (192) Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd 139 (192) -.|++.+.++|.++-++|++-.|.+++||..+=+ T Consensus 43 ~~vL~~l~~~~~~t~~eLa~~~~i~~~tit~~i~ 76 (147) T 1z91_A 43 YLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLK 76 (147) T ss_dssp HHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999999977994999999997978878999999 No 22 >1zd1_A Sulfotransferase 4A1; SGC, SULT4A1, structural genomics, structural genomics consortium; 2.24A {Homo sapiens} Probab=35.72 E-value=8.5 Score=19.41 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=6.2 Q ss_pred CHHHHHHHHHHHH Q ss_conf 8999999999973 Q gi|254780800|r 160 AQIDLDREIEKCS 172 (192) Q Consensus 160 sQ~dLd~av~KA~ 172 (192) +...++++++..+ T Consensus 219 ~~~~l~~~~~~~s 231 (284) T 1zd1_A 219 DKAQLEALTEHCH 231 (284) T ss_dssp CHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHH T ss_conf 9999999999702 No 23 >2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} Probab=34.29 E-value=28 Score=16.25 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=29.3 Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 9999998424558424346643875899999628 Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR 140 (192) Q Consensus 107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR 140 (192) .+++.|..+|+++-++|++.+|-++++|..+=++ T Consensus 46 ~vL~~l~~~~~~t~~~La~~l~~~~~~vs~~l~~ 79 (150) T 2rdp_A 46 VALQWLLEEGDLTVGELSNKMYLACSTTTDLVDR 79 (150) T ss_dssp HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999999779959999999989688789999999 No 24 >3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} Probab=34.20 E-value=28 Score=16.24 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=29.1 Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 999999842455842434664387589999962 Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN 139 (192) Q Consensus 107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd 139 (192) .|+..|..++.++-++|++.+|-+++||..+=+ T Consensus 35 ~iL~~l~~~~~~t~~~la~~l~~~~~~vs~~i~ 67 (145) T 3g3z_A 35 AVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCK 67 (145) T ss_dssp HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999999987994999999998969889999999 No 25 >3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3} Probab=33.26 E-value=26 Score=16.49 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=29.5 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 7999999842455842434664387589999962 Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN 139 (192) Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd 139 (192) -.+++.|..+|.++-++++...|-++++|..+=+ T Consensus 43 ~~vL~~l~~~~~~t~~~La~~l~~~~~~is~~l~ 76 (152) T 3bj6_A 43 RAILEGLSLTPGATAPQLGAALQMKRQYISRILQ 76 (152) T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999999987998999999998969879999999 No 26 >2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Probab=33.25 E-value=23 Score=16.78 Aligned_cols=35 Identities=9% Similarity=0.197 Sum_probs=30.3 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 79999998424558424346643875899999628 Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR 140 (192) Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR 140 (192) -.+++.+.++++++-++|++-.|-++.+|..+=++ T Consensus 39 ~~vL~~l~~~~~~~~~~la~~l~i~~~~vs~~i~~ 73 (142) T 2fbi_A 39 WRVIRILRQQGEMESYQLANQACILRPSMTGVLAR 73 (142) T ss_dssp HHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999879979999999979898899999999 No 27 >1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2 Probab=33.22 E-value=17 Score=17.55 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=23.3 Q ss_pred HHHHHHHHCCCCCHHHHHHHHC-CCHHHHHH Q ss_conf 9999998424558424346643-87589999 Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVG-TTGSTIEQ 136 (192) Q Consensus 107 AI~WLiknhPeL~D~QI~KLiG-TTK~TI~s 136 (192) ...||++.+..++-.+|++..| -.-.||-. T Consensus 36 iamyL~r~~t~~sl~~IG~~fg~RdHsTV~h 66 (94) T 1j1v_A 36 MAMALAKELTNHSLPEIGDAFGGRDHTTVLH 66 (94) T ss_dssp HHHHHHHHHSCCCHHHHHHHTTSCCHHHHHH T ss_pred HHHHHHHHHHCCCHHHHHHHHCCCCCCHHHH T ss_conf 9999999882899999999968998409999 No 28 >2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Probab=31.92 E-value=31 Score=16.01 Aligned_cols=46 Identities=11% Similarity=0.059 Sum_probs=31.3 Q ss_pred HHHHHHH-HCCCCCHHHHHHHHCCCHHHHHHHHCC---CCCCCCCCCCCC Q ss_conf 9999998-424558424346643875899999628---887701268377 Q gi|254780800|r 107 AILWLIR-NYPRLKDAQISHLVGTTGSTIEQIRNR---THWNTANLVPMD 152 (192) Q Consensus 107 AI~WLik-nhPeL~D~QI~KLiGTTK~TI~sIRdR---tHWN~~Ni~P~D 152 (192) .|+..|. +...++-++|++.+|.++.||..+=++ .-|=.-.-.|.| T Consensus 39 ~vL~~i~~~~g~~t~~ela~~~~~~~~tvs~~l~~L~~~glv~r~~~~~D 88 (147) T 2hr3_A 39 VVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQD 88 (147) T ss_dssp HHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC---- T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC T ss_conf 99999997699989999999989798799999999986796687357887 No 29 >3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A Probab=31.63 E-value=26 Score=16.44 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=27.8 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 79999998424558424346643875899999628 Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR 140 (192) Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR 140 (192) -.|+..+.++| ++-++|++..|-+|+||..+=++ T Consensus 41 ~~iL~~l~~~~-~t~~~la~~l~i~~~~vs~~i~~ 74 (151) T 3kp7_A 41 SHVLNMLSIEA-LTVGQITEKQGVNKAAVSRRVKK 74 (151) T ss_dssp HHHHHHHHHSC-BCHHHHHHHHCSCSSHHHHHHHH T ss_pred HHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999986289-99999999989688899999999 No 30 >3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A 3mex_A Probab=30.20 E-value=27 Score=16.36 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=29.7 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 79999998424558424346643875899999628 Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR 140 (192) Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR 140 (192) -.|+..+.++|.++-++|++..|.++++|..+-+| T Consensus 40 ~~iL~~l~~~~~~t~~~La~~l~i~~~~vsr~l~~ 74 (142) T 3ech_A 40 VHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRE 74 (142) T ss_dssp HHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999779989999999989698799999999 No 31 >3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} Probab=28.86 E-value=26 Score=16.49 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=33.2 Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC---CCCCCCCCCCCC Q ss_conf 9999998424558424346643875899999628---887701268377 Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR---THWNTANLVPMD 152 (192) Q Consensus 107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR---tHWN~~Ni~P~D 152 (192) .++..|..|+.++-++|++..|.++++|..+=++ ..|=.---.|.| T Consensus 57 ~vL~~l~~~~~~t~~~la~~l~i~~~~vs~~i~~L~~~glv~r~~~~~D 105 (161) T 3e6m_A 57 RLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDAD 105 (161) T ss_dssp HHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---C T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCC T ss_conf 9999999779989999999989788799999999983897798325899 No 32 >3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua} Probab=28.70 E-value=24 Score=16.64 Aligned_cols=34 Identities=6% Similarity=0.183 Sum_probs=22.9 Q ss_pred HHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHHC Q ss_conf 799999984245-5842434664387589999962 Q gi|254780800|r 106 NAILWLIRNYPR-LKDAQISHLVGTTGSTIEQIRN 139 (192) Q Consensus 106 dAI~WLiknhPe-L~D~QI~KLiGTTK~TI~sIRd 139 (192) .++.|+-.|+-+ ++-.++++-.|.+..++..+=. T Consensus 9 ~v~~~i~~~~~~~~sl~~la~~~~~s~~~l~r~fk 43 (108) T 3oou_A 9 NVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQ 43 (108) T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999998558999999999998929999999999 No 33 >3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A Probab=28.58 E-value=16 Score=17.66 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=28.1 Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 999999842455842434664387589999962 Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN 139 (192) Q Consensus 107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd 139 (192) .|+..|.+++.++-++|++.+|.+++||..+=+ T Consensus 40 ~vL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~ 72 (140) T 3hsr_A 40 IVLMAIENDEKLNIKKLGERVFLDSGTLTPLLK 72 (140) T ss_dssp HHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 999999867998999999998978647999999 No 34 >3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} Probab=28.13 E-value=31 Score=16.02 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=28.8 Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 9999998424558424346643875899999628 Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR 140 (192) Q Consensus 107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR 140 (192) .|+..+-.+|.++-++|++..+-+|+||..+-++ T Consensus 47 ~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~v~~ 80 (155) T 3cdh_A 47 RVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQ 80 (155) T ss_dssp HHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 9999998579969999999989699889999999 No 35 >3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile} Probab=27.71 E-value=36 Score=15.57 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=23.1 Q ss_pred HHHHHHHHCCC--CCHHHHHHHHCCCHHHHHHHHC Q ss_conf 99999984245--5842434664387589999962 Q gi|254780800|r 107 AILWLIRNYPR--LKDAQISHLVGTTGSTIEQIRN 139 (192) Q Consensus 107 AI~WLiknhPe--L~D~QI~KLiGTTK~TI~sIRd 139 (192) .++..|-++|+ ++-++|++..|.+++||..+=+ T Consensus 45 ~vL~~l~~~~~~~~t~~eLa~~l~i~~stvs~~v~ 79 (189) T 3nqo_A 45 MTILSILHLPEEETTLNNIARKMGTSKQNINRLVA 79 (189) T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 99999984789990999999998968869999999 No 36 >2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} SCOP: a.4.5.50 Probab=27.63 E-value=36 Score=15.56 Aligned_cols=31 Identities=10% Similarity=0.220 Sum_probs=24.7 Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 9999984245584243466438758999996 Q gi|254780800|r 108 ILWLIRNYPRLKDAQISHLVGTTGSTIEQIR 138 (192) Q Consensus 108 I~WLiknhPeL~D~QI~KLiGTTK~TI~sIR 138 (192) +.-|++.+..++-++|++.+|-+++||..+= T Consensus 27 L~~L~~~~~~~t~~eia~~~~~~~~tvs~~l 57 (109) T 2d1h_A 27 LLKMVEIEKPITSEELADIFKLSKTTVENSL 57 (109) T ss_dssp HHHHHHHCSCEEHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9999975989899999999897885899999 No 37 >3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum} Probab=26.91 E-value=29 Score=16.16 Aligned_cols=29 Identities=7% Similarity=0.137 Sum_probs=14.2 Q ss_pred HHHHHC--CCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 999842--45584243466438758999996 Q gi|254780800|r 110 WLIRNY--PRLKDAQISHLVGTTGSTIEQIR 138 (192) Q Consensus 110 WLiknh--PeL~D~QI~KLiGTTK~TI~sIR 138 (192) |+-+|| |+++-.++++-+|.+..++..+= T Consensus 10 ~I~~~~~~~~l~l~~lA~~~~~s~~~l~r~f 40 (103) T 3lsg_A 10 IIEESYTDSQFTLSVLSEKLDLSSGYLSIMF 40 (103) T ss_dssp HHHHHTTCTTCCHHHHHHHTTCCHHHHHHHH T ss_pred HHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9997667999899999999892999999999 No 38 >1q20_A SULT2B1B, sulfotransferase family, cytosolic, 2B, member 1 isoform B; pregnenolone, cholesterol, PAP; HET: A3P PLO; 2.30A {Homo sapiens} SCOP: c.37.1.5 PDB: 1q1z_A* 1q22_A* Probab=26.48 E-value=15 Score=17.89 Aligned_cols=13 Identities=8% Similarity=0.164 Sum_probs=6.7 Q ss_pred CHHHHHHHHHHHH Q ss_conf 8999999999973 Q gi|254780800|r 160 AQIDLDREIEKCS 172 (192) Q Consensus 160 sQ~dLd~av~KA~ 172 (192) +...++.++++.+ T Consensus 220 ~~~~i~~i~~~~s 232 (299) T 1q20_A 220 GKEALGSVVAHST 232 (299) T ss_dssp CHHHHHHHHHHHS T ss_pred CHHHHHHHHHHHH T ss_conf 8999999998745 No 39 >2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} Probab=25.47 E-value=40 Score=15.32 Aligned_cols=34 Identities=9% Similarity=0.185 Sum_probs=29.2 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 7999999842455842434664387589999962 Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN 139 (192) Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd 139 (192) -.|++.|..+|.++-++|++..|.|++|+..+=+ T Consensus 52 ~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~ 85 (162) T 2fa5_A 52 WRVITILALYPGSSASEVSDRTAMDKVAVSRAVA 85 (162) T ss_dssp HHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999999867998999999997878715999999 No 40 >2reo_A Putative sulfotransferase 1C3; sulfate conjugation, PAP, structural genomics consortium, SGC, alternative splicing, cytoplasm, polymorphism; HET: A3P; 2.65A {Homo sapiens} PDB: 2h8k_A* Probab=25.23 E-value=16 Score=17.66 Aligned_cols=13 Identities=23% Similarity=0.159 Sum_probs=5.8 Q ss_pred CHHHHHHHHHHHH Q ss_conf 8999999999973 Q gi|254780800|r 160 AQIDLDREIEKCS 172 (192) Q Consensus 160 sQ~dLd~av~KA~ 172 (192) +...++++++++. T Consensus 226 ~~~~i~~iv~~~s 238 (305) T 2reo_A 226 SEEILNKIIYHTS 238 (305) T ss_dssp CHHHHHHHHHHTS T ss_pred CHHHHHHHHHHCC T ss_conf 6789999999767 No 41 >1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A* Probab=25.20 E-value=40 Score=15.29 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=11.1 Q ss_pred CCCCCCCCHHHH-CCCHHHHHHHH Q ss_conf 355653420331-15717999999 Q gi|254780800|r 90 KKKKRYTPVSKR-QDRPNAILWLI 112 (192) Q Consensus 90 ~Kg~kYTPlSkR-qDkPdAI~WLi 112 (192) ..||-+..++.| ...+++..||. T Consensus 20 g~gP~~~~i~~~~~~~~~~~~~l~ 43 (81) T 1a56_A 20 VVGPALKDIAAKYADKDDAATYLA 43 (81) T ss_dssp SSSCCHHHHHHHHTTSSSHHHHHH T ss_pred CCCCCCHHHHHHCCCCCHHHHHHH T ss_conf 889884667765157611789999 No 42 >3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12} Probab=25.19 E-value=40 Score=15.29 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=25.9 Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHH Q ss_conf 999999842455842434664387589999 Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQ 136 (192) Q Consensus 107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~s 136 (192) .|++++...|+++-++|+...|.+.+||.. T Consensus 28 ~Il~~L~~~~~~~v~eLa~~l~~s~stvS~ 57 (99) T 3cuo_A 28 LILCMLSGSPGTSAGELTRITGLSASATSQ 57 (99) T ss_dssp HHHHHHTTCCSEEHHHHHHHHCCCHHHHHH T ss_pred HHHHHHHCCCCEEHHHHHHHHCCCHHHHHH T ss_conf 999998589990799977455859879999 No 43 >2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2 Probab=24.41 E-value=35 Score=15.64 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=17.8 Q ss_pred HHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 32256489999999999730121 Q gi|254780800|r 154 VTLGLCAQIDLDREIEKCSKNTE 176 (192) Q Consensus 154 V~LGLCsQ~dLd~av~KA~~~~~ 176 (192) +.+-|-+|.|||+||+--.+... T Consensus 54 L~IPL~~Q~DLDkAvellDrs~~ 76 (103) T 2cu1_A 54 LVIPLTTQDDLDKAVELLDRSIH 76 (103) T ss_dssp SCEECCSHHHHHHHHHHHHHCSS T ss_pred EEEECCCHHHHHHHHHHHCCCCC T ss_conf 78863667889999998705866 No 44 >3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum} Probab=24.39 E-value=32 Score=15.87 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=23.9 Q ss_pred HHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHH Q ss_conf 799999984245-584243466438758999996 Q gi|254780800|r 106 NAILWLIRNYPR-LKDAQISHLVGTTGSTIEQIR 138 (192) Q Consensus 106 dAI~WLiknhPe-L~D~QI~KLiGTTK~TI~sIR 138 (192) .++.|+-.|+.+ ++-.++++.+|.+..++...= T Consensus 11 ~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~f 44 (113) T 3oio_A 11 EAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLF 44 (113) T ss_dssp HHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHH T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 9999999755899999999999891999999999 No 45 >2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 Probab=23.86 E-value=32 Score=15.91 Aligned_cols=34 Identities=6% Similarity=0.095 Sum_probs=25.1 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 7999999842455842434664387589999962 Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN 139 (192) Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd 139 (192) -.++..|..+|.++-++|++..|.++.+|..+=+ T Consensus 40 ~~vL~~i~~~~~~t~~~la~~l~~~~~~vs~~l~ 73 (142) T 2bv6_A 40 FLVLTILWDESPVNVKKVVTELALDTGTVSPLLK 73 (142) T ss_dssp HHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 9999999977998999999998979879999999 No 46 >1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50 Probab=23.57 E-value=43 Score=15.10 Aligned_cols=33 Identities=9% Similarity=0.106 Sum_probs=24.3 Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC Q ss_conf 999999842455842434664387589999962 Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN 139 (192) Q Consensus 107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd 139 (192) .|+-.+..++.++-.+|++-+|.+++||..+-+ T Consensus 24 ~v~~~L~~~~~~t~~eia~~~~~~~~~v~~~l~ 56 (109) T 1sfx_A 24 RIYSLLLERGGMRVSEIARELDLSARFVRDRLK 56 (109) T ss_dssp HHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHH T ss_conf 999999804888799999997567018999999 No 47 >1q44_A RARO47;, steroid sulphotransferase; APO, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.90A {Arabidopsis thaliana} SCOP: c.37.1.5 PDB: 2q3m_A Probab=23.46 E-value=19 Score=17.25 Aligned_cols=13 Identities=15% Similarity=0.432 Sum_probs=6.6 Q ss_pred CHHHHHHHHHHHH Q ss_conf 8999999999973 Q gi|254780800|r 160 AQIDLDREIEKCS 172 (192) Q Consensus 160 sQ~dLd~av~KA~ 172 (192) .+.+++++|++.+ T Consensus 252 d~~~i~~iv~~~S 264 (326) T 1q44_A 252 EEEEVREIVKLCS 264 (326) T ss_dssp CHHHHHHHHHHHT T ss_pred CHHHHHHHHHHCC T ss_conf 0578999999668 No 48 >2zpt_X Tyrosine-ester sulfotransferase; SULT1D1, catecholamine, sulfonation; HET: A3P GOL; 1.15A {Mus musculus} PDB: 2zvp_X* 2zvq_X* 2zyt_X* 2zyu_X* 2zyv_X* 2zyw_X* Probab=23.43 E-value=19 Score=17.32 Aligned_cols=12 Identities=8% Similarity=0.072 Sum_probs=4.9 Q ss_pred CHHHHHHHHHHH Q ss_conf 899999999997 Q gi|254780800|r 160 AQIDLDREIEKC 171 (192) Q Consensus 160 sQ~dLd~av~KA 171 (192) +...|+++++.+ T Consensus 216 ~~~~l~~~v~~~ 227 (295) T 2zpt_X 216 PEEILNKILYHS 227 (295) T ss_dssp CHHHHHHHHHHT T ss_pred HHHHHHHHHHHC T ss_conf 299999999975 No 49 >3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, alternative splicing, DNA-binding, nucleus; HET: DNA; 2.75A {Mus musculus} PDB: 2yul_A Probab=22.87 E-value=30 Score=16.11 Aligned_cols=20 Identities=30% Similarity=0.677 Sum_probs=17.1 Q ss_pred HHHHCCCCCHHHHHHHHCCC Q ss_conf 99842455842434664387 Q gi|254780800|r 111 LIRNYPRLKDAQISHLVGTT 130 (192) Q Consensus 111 LiknhPeL~D~QI~KLiGTT 130 (192) +.+.||.++.++|+|++|.- T Consensus 25 i~~~~P~~~~~eisk~lg~~ 44 (83) T 3f27_D 25 LAQQNPDLHNAELSKMLGKS 44 (83) T ss_dssp HHHHCSSSCHHHHHHHHHHH T ss_pred HHHHCCCCCHHHHHHHHHHH T ss_conf 99886589999999999999 No 50 >2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Probab=22.71 E-value=45 Score=15.00 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=26.9 Q ss_pred HHHHHHHHCC-CCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 9999998424-558424346643875899999628 Q gi|254780800|r 107 AILWLIRNYP-RLKDAQISHLVGTTGSTIEQIRNR 140 (192) Q Consensus 107 AI~WLiknhP-eL~D~QI~KLiGTTK~TI~sIRdR 140 (192) .|++.|-.|| .++-++|++..|.+++||..+=++ T Consensus 41 ~iL~~l~~~~~~~t~~eL~~~~~~~~~~vs~~i~~ 75 (146) T 2fbh_A 41 LVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDG 75 (146) T ss_dssp HHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999986799999999999989689899999999 No 51 >3mgb_A TEG12; sulfotransferase, glycopeptide, transferase-anti complex; HET: GHP 3MY 3FG OMY PAP; 2.04A {Uncultured soil bacterium} PDB: 3mgc_A* 3mg9_A* Probab=22.25 E-value=20 Score=17.15 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=6.2 Q ss_pred CHHHHHHHHHHHH Q ss_conf 8999999999973 Q gi|254780800|r 160 AQIDLDREIEKCS 172 (192) Q Consensus 160 sQ~dLd~av~KA~ 172 (192) +...++.+|++++ T Consensus 226 ~~~~i~~~v~~~s 238 (319) T 3mgb_A 226 DIEDIRRAVAAST 238 (319) T ss_dssp CHHHHHHHHHTTS T ss_pred CHHHHHHHHHHCC T ss_conf 9999999999789 No 52 >2ov8_A STAL; sulfotransferase, structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, unknown function; 2.58A {Streptomyces toyocaensis} PDB: 2ovb_A 2ovf_A* Probab=21.91 E-value=21 Score=17.03 Aligned_cols=12 Identities=33% Similarity=0.899 Sum_probs=7.9 Q ss_pred CCCCHHHH--HHHH Q ss_conf 88613454--3024 Q gi|254780800|r 5 PLMPKASA--VWLI 16 (192) Q Consensus 5 pLMPkATA--vWLv 16 (192) -|+|+.+- |||| T Consensus 13 ~~~~~~~~~iifi~ 26 (288) T 2ov8_A 13 GLVPRGSHMMCWIA 26 (288) T ss_dssp --------CEEEEE T ss_pred CCCCCCCCCCEEEE T ss_conf 76669999828997 No 53 >1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 Probab=21.44 E-value=45 Score=15.01 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=28.3 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC Q ss_conf 79999998424558424346643875899999628 Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR 140 (192) Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR 140 (192) -.++..|..++.++-++|++.+|-++++|..+=++ T Consensus 40 ~~vL~~l~~~~~~t~~ela~~~~~~~~~vs~~l~~ 74 (155) T 1s3j_A 40 LFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADR 74 (155) T ss_dssp HHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999869979999999989699899999999 No 54 >2gwh_A Sulfotransferase 1C2; sulfate conjugation, pentachlorophenol, PAP, pesticide, structural genomics, structural genomics consortium, SGC; HET: A3P PCI; 1.80A {Homo sapiens} PDB: 2ad1_A* Probab=21.35 E-value=21 Score=16.97 Aligned_cols=13 Identities=23% Similarity=0.192 Sum_probs=6.3 Q ss_pred CHHHHHHHHHHHH Q ss_conf 8999999999973 Q gi|254780800|r 160 AQIDLDREIEKCS 172 (192) Q Consensus 160 sQ~dLd~av~KA~ 172 (192) +...|+++++.++ T Consensus 219 ~~~~i~~iv~~~s 231 (298) T 2gwh_A 219 DDKVLDKIVHYTS 231 (298) T ss_dssp CHHHHHHHHHHTS T ss_pred CHHHHHHHHHHCC T ss_conf 7689999999777 No 55 >2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus} Probab=21.31 E-value=48 Score=14.82 Aligned_cols=38 Identities=8% Similarity=0.098 Sum_probs=31.7 Q ss_pred HHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH Q ss_conf 03311571799999984245584243466438758999996 Q gi|254780800|r 98 VSKRQDRPNAILWLIRNYPRLKDAQISHLVGTTGSTIEQIR 138 (192) Q Consensus 98 lSkRqDkPdAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIR 138 (192) +|..|= .|+..+..+|.++-++|++.+|.+++|+..+= T Consensus 150 ls~~~~---~iL~~L~~~~~~s~~ela~~l~~s~~tv~r~l 187 (244) T 2wte_A 150 YSREEM---KLLNVLYETKGTGITELAKMLDKSEKTLINKI 187 (244) T ss_dssp CCHHHH---HHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHH T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH T ss_conf 999999---99999997799899999999797988999999 No 56 >2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A Probab=21.27 E-value=48 Score=14.82 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=17.3 Q ss_pred HHHCCCCHHHHHHHHHHHHHHH Q ss_conf 3225648999999999973012 Q gi|254780800|r 154 VTLGLCAQIDLDREIEKCSKNT 175 (192) Q Consensus 154 V~LGLCsQ~dLd~av~KA~~~~ 175 (192) +..-|-+|.|||+||+--.++. T Consensus 50 L~IPl~~Q~DLDkAvelLDrs~ 71 (94) T 2jrh_A 50 LSILLKNQDDLDKAIDILDRSS 71 (94) T ss_dssp CEEECCSHHHHHHHHHHHHHST T ss_pred EEEECCCHHHHHHHHHHHHCCC T ss_conf 8886367788999999870596 No 57 >1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3 Probab=21.04 E-value=49 Score=14.79 Aligned_cols=34 Identities=9% Similarity=-0.001 Sum_probs=28.6 Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCCC Q ss_conf 9999984245584243466438758999996288 Q gi|254780800|r 108 ILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNRT 141 (192) Q Consensus 108 I~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdRt 141 (192) -.+.++++-+++-++|+...|.+.+||.+.--|. T Consensus 32 ~v~~l~~~e~ls~~EIA~~lgiS~~aV~~~l~RA 65 (113) T 1xsv_A 32 NYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRT 65 (113) T ss_dssp HHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHH T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH T ss_conf 9999999919999999999896999999999999 No 58 >1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 1o4x_B Probab=20.97 E-value=28 Score=16.22 Aligned_cols=20 Identities=20% Similarity=0.587 Sum_probs=16.6 Q ss_pred HHHHCCCCCHHHHHHHHCCC Q ss_conf 99842455842434664387 Q gi|254780800|r 111 LIRNYPRLKDAQISHLVGTT 130 (192) Q Consensus 111 LiknhPeL~D~QI~KLiGTT 130 (192) |...+|.++-++|+|++|.- T Consensus 21 l~~~~p~~~~~eisk~~g~~ 40 (80) T 1gt0_D 21 MAQENPKMHNSEISKRLGAE 40 (80) T ss_dssp HHTTSTTSCHHHHHHHHHHH T ss_pred HHHHCCCCCHHHHHHHHHHH T ss_conf 99987899999999999999 No 59 >1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens} SCOP: c.37.1.5 Probab=20.81 E-value=23 Score=16.81 Aligned_cols=10 Identities=40% Similarity=1.122 Sum_probs=5.4 Q ss_pred CCHHHHHHHH Q ss_conf 6134543024 Q gi|254780800|r 7 MPKASAVWLI 16 (192) Q Consensus 7 MPkATAvWLv 16 (192) |||.---||- T Consensus 53 yPKSGTTWlr 62 (350) T 1q1q_A 53 YPKSGTTWMI 62 (350) T ss_dssp CTTSSHHHHH T ss_pred CCCCHHHHHH T ss_conf 9986699999 No 60 >2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK5, PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain, MAP3K2; 1.75A {Homo sapiens} SCOP: d.15.2.2 Probab=20.24 E-value=48 Score=14.84 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=17.4 Q ss_pred HHHCCCCHHHHHHHHHHHHHHH Q ss_conf 3225648999999999973012 Q gi|254780800|r 154 VTLGLCAQIDLDREIEKCSKNT 175 (192) Q Consensus 154 V~LGLCsQ~dLd~av~KA~~~~ 175 (192) +..-|-+|.|||+||+--.++. T Consensus 66 L~IPl~~Q~DLDkAvellDrs~ 87 (100) T 2npt_B 66 LVIPLTTQDDLDKAVELLDRSI 87 (100) T ss_dssp EEEECCCHHHHHHHHHHHHHCS T ss_pred EEEECCCHHHHHHHHHHHHCCC T ss_conf 7886356788999999871596 No 61 >1ls6_A ARYL sulfotransferase; SULT 1A1, PAP, P-nitrophenol, positive cooperativity, two substrate binding sites; HET: A3P NPO; 1.90A {Homo sapiens} SCOP: c.37.1.5 PDB: 2d06_A* 1z28_A* 1z29_A* 1cjm_A 2a3r_A* Probab=20.08 E-value=24 Score=16.71 Aligned_cols=13 Identities=15% Similarity=0.199 Sum_probs=7.5 Q ss_pred CHHHHHHHHHHHH Q ss_conf 8999999999973 Q gi|254780800|r 160 AQIDLDREIEKCS 172 (192) Q Consensus 160 sQ~dLd~av~KA~ 172 (192) +...++.++++++ T Consensus 216 ~~~~i~~~v~~~s 228 (295) T 1ls6_A 216 PEETVDFMVQHTS 228 (295) T ss_dssp CHHHHHHHHHHTS T ss_pred CHHHHHHHHHHCC T ss_conf 5889999999677 Done!