Query gi|254780800|ref|YP_003065213.1| hypothetical protein CLIBASIA_03455 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 192
No_of_seqs 115 out of 360
Neff 3.3
Searched_HMMs 13730
Date Wed Jun 1 07:25:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780800.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1z05a1 a.4.5.63 (A:10-80) Tra 79.8 0.94 6.9E-05 23.8 3.8 34 106-139 9-42 (71)
2 d1z6ra1 a.4.5.63 (A:12-81) Mlc 66.5 3 0.00022 20.7 3.7 34 106-139 8-41 (70)
3 d2hoea1 a.4.5.63 (A:10-71) N-a 65.9 2.2 0.00016 21.6 2.9 31 108-139 4-34 (62)
4 d2fxaa1 a.4.5.28 (A:6-167) Pro 60.9 2.4 0.00017 21.3 2.4 35 106-140 44-78 (162)
5 d2a61a1 a.4.5.28 (A:5-143) Tra 57.0 4.4 0.00032 19.7 3.2 35 106-140 33-67 (139)
6 d1ub9a_ a.4.5.28 (A:) Hypothet 48.6 6.2 0.00045 18.8 2.8 34 106-139 19-52 (100)
7 d1j5ya1 a.4.5.1 (A:3-67) Putat 46.7 7 0.00051 18.5 2.9 37 100-136 4-41 (65)
8 d2etha1 a.4.5.28 (A:1-140) Put 44.0 8.5 0.00062 18.0 3.0 36 107-142 36-71 (140)
9 d1a9xa1 a.92.1.1 (A:403-555) C 43.7 6.8 0.0005 18.5 2.4 26 116-141 93-118 (153)
10 d1l8qa1 a.4.12.2 (A:290-399) C 41.6 5.9 0.00043 18.9 1.8 32 107-138 49-82 (110)
11 d1jgsa_ a.4.5.28 (A:) Multiple 41.4 11 0.00079 17.3 3.2 34 106-139 37-70 (138)
12 d1lnwa_ a.4.5.28 (A:) MexR rep 38.7 12 0.00086 17.1 3.0 34 106-139 39-72 (141)
13 d1d5ya2 a.4.1.8 (A:57-121) Rob 35.9 9.4 0.00069 17.7 2.1 25 10-34 4-28 (65)
14 d1n5ua3 a.126.1.1 (A:389-584) 35.8 9.8 0.00071 17.6 2.2 30 107-136 140-169 (196)
15 d2fbia1 a.4.5.28 (A:5-140) Pro 35.1 12 0.00086 17.1 2.5 54 106-159 33-89 (136)
16 d1s3ja_ a.4.5.28 (A:) Putative 34.2 11 0.00081 17.2 2.3 34 107-140 39-72 (143)
17 d2cfxa1 a.4.5.32 (A:1-63) Tran 33.1 17 0.0012 16.1 3.5 30 107-136 9-38 (63)
18 d1bl0a2 a.4.1.8 (A:63-124) Mar 32.5 12 0.00084 17.1 2.1 24 11-34 5-28 (62)
19 d1z91a1 a.4.5.28 (A:8-144) Org 31.2 15 0.0011 16.5 2.5 33 106-138 36-68 (137)
20 d2fbha1 a.4.5.28 (A:8-144) Tra 30.6 19 0.0014 15.9 3.3 33 107-139 32-65 (137)
21 d1ls6a_ c.37.1.5 (A:) Aryl sul 30.5 6.6 0.00048 18.6 0.6 14 159-172 208-221 (288)
22 d1biaa1 a.4.5.1 (A:1-63) Bioti 27.3 19 0.0014 15.9 2.5 33 104-136 6-38 (63)
23 d2z5fa_ c.37.1.5 (A:) Thyroid 27.2 8.5 0.00062 18.0 0.7 18 61-78 87-104 (293)
24 d1rp3a2 a.4.13.2 (A:164-234) S 25.4 23 0.0017 15.3 3.0 35 106-140 26-60 (71)
25 d1hlva1 a.4.1.7 (A:1-66) DNA-b 25.2 23 0.0017 15.3 3.8 34 107-140 15-48 (66)
26 d1xsva_ a.4.13.3 (A:) Hypothet 24.3 24 0.0018 15.2 2.9 35 108-142 25-59 (106)
27 d1sfxa_ a.4.5.50 (A:) Hypothet 23.3 25 0.0018 15.1 3.0 33 107-139 24-56 (109)
28 d1tuaa1 d.51.1.1 (A:1-84) Hypo 22.6 9.3 0.00068 17.7 0.2 56 117-173 8-64 (84)
29 d1lj9a_ a.4.5.28 (A:) Transcri 21.9 27 0.002 14.9 2.8 46 107-152 33-81 (144)
30 d1q44a_ c.37.1.5 (A:) Putative 21.2 13 0.00095 16.8 0.7 17 156-172 241-259 (320)
31 d1dwka1 a.35.1.4 (A:1-86) Cyan 20.6 18 0.0013 16.0 1.3 23 18-40 24-46 (86)
32 d1x4na1 d.51.1.1 (A:8-86) Far 20.1 10 0.00076 17.4 0.0 30 117-146 13-42 (79)
No 1
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=79.76 E-value=0.94 Score=23.77 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=31.2
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 7999999842455842434664387589999962
Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN 139 (192)
Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd 139 (192)
..|+.+++.|+.++-++|++.+|-+..||..+=+
T Consensus 9 ~~Il~~l~~~g~~sr~eLa~~~glS~~Tv~~~l~ 42 (71)
T d1z05a1 9 GRVYKLIDQKGPISRIDLSKESELAPASITKITR 42 (71)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999985994899999998878878999999
No 2
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=66.51 E-value=3 Score=20.69 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=31.0
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 7999999842455842434664387589999962
Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN 139 (192)
Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd 139 (192)
..|+=+++.|+.++-++|++..|-++.||..|=+
T Consensus 8 ~~Il~~i~~~g~~sr~eLa~~~gLS~~Tvs~iv~ 41 (70)
T d1z6ra1 8 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVH 41 (70)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999994992899999998949999999999
No 3
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=65.94 E-value=2.2 Score=21.59 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=25.3
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 99999842455842434664387589999962
Q gi|254780800|r 108 ILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN 139 (192)
Q Consensus 108 I~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd 139 (192)
|+=+++++| ++-++|++..|.+++||..+=+
T Consensus 4 Il~~i~~~p-isr~eLa~~~gls~~TVs~~v~ 34 (62)
T d2hoea1 4 ILKRIMKSP-VSRVELAEELGLTKTTVGEIAK 34 (62)
T ss_dssp SHHHHHHSC-BCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999789-6999999998939999999999
No 4
>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}
Probab=60.94 E-value=2.4 Score=21.32 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=31.2
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 79999998424558424346643875899999628
Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR 140 (192)
Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR 140 (192)
-.|+|++.+|+.++-++|++..|-+|+||..+=+|
T Consensus 44 ~~vL~~l~~~~~~t~~~la~~~~l~~~tvs~~i~r 78 (162)
T d2fxaa1 44 HHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKK 78 (162)
T ss_dssp HHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99996521189918999999976994031998999
No 5
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=56.96 E-value=4.4 Score=19.70 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=30.9
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 79999998424558424346643875899999628
Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR 140 (192)
Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR 140 (192)
-.|++.|..+|.++-++|++..|.+++||..+=++
T Consensus 33 ~~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~l~~ 67 (139)
T d2a61a1 33 FDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKR 67 (139)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHH
T ss_conf 99999999769989999999839881442699999
No 6
>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=48.58 E-value=6.2 Score=18.77 Aligned_cols=34 Identities=12% Similarity=0.121 Sum_probs=30.4
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 7999999842455842434664387589999962
Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN 139 (192)
Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd 139 (192)
-+|+.++..+++++-++|++.+|.|++|+..+=+
T Consensus 19 ~~IL~~L~~~~~~~~~eLa~~l~is~~~vs~~l~ 52 (100)
T d1ub9a_ 19 LGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIR 52 (100)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHCCCCCEEHHHHHHHHHHCCCCCCHHHH
T ss_conf 9999876047990199999998625432309999
No 7
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=46.75 E-value=7 Score=18.46 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=32.0
Q ss_pred HHCCCHHHHHHHHHHCCC-CCHHHHHHHHCCCHHHHHH
Q ss_conf 311571799999984245-5842434664387589999
Q gi|254780800|r 100 KRQDRPNAILWLIRNYPR-LKDAQISHLVGTTGSTIEQ 136 (192)
Q Consensus 100 kRqDkPdAI~WLiknhPe-L~D~QI~KLiGTTK~TI~s 136 (192)
.|.+|=..|..+++++.. ++-.++++..|.+..||-.
T Consensus 4 ~k~eR~~~Il~~L~~~~~~vs~~~La~~l~VS~~TI~r 41 (65)
T d1j5ya1 4 VRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQ 41 (65)
T ss_dssp HHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 09999999999999859978599999997989999999
No 8
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=43.99 E-value=8.5 Score=17.95 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=31.3
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 999999842455842434664387589999962888
Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNRTH 142 (192)
Q Consensus 107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdRtH 142 (192)
-|+..|..+|.++-++|++..|.+|+||..+=++=.
T Consensus 36 ~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~~L~ 71 (140)
T d2etha1 36 YAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLE 71 (140)
T ss_dssp HHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999986995999999998969879999999998
No 9
>d1a9xa1 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetase, large subunit connection domain {Escherichia coli [TaxId: 562]}
Probab=43.74 E-value=6.8 Score=18.54 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 45584243466438758999996288
Q gi|254780800|r 116 PRLKDAQISHLVGTTGSTIEQIRNRT 141 (192)
Q Consensus 116 PeL~D~QI~KLiGTTK~TI~sIRdRt 141 (192)
=-.||.||++|.|++-..|.+.|..-
T Consensus 93 ~GFSD~~ia~l~~~~e~~vr~~R~~~ 118 (153)
T d1a9xa1 93 KGFADARLAKLAGVREAEIRKLRDQY 118 (153)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 38878988988728699999999972
No 10
>d1l8qa1 a.4.12.2 (A:290-399) Chromosomal replication initiation factor DnaA C-terminal domain IV {Aquifex aeolicus [TaxId: 63363]}
Probab=41.61 E-value=5.9 Score=18.90 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=24.4
Q ss_pred HHHHHHHHCCCCCHHHHHHHHC-CCHHHHH-HHH
Q ss_conf 9999998424558424346643-8758999-996
Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVG-TTGSTIE-QIR 138 (192)
Q Consensus 107 AI~WLiknhPeL~D~QI~KLiG-TTK~TI~-sIR 138 (192)
...||++.+-.++-.+|++..| -.-.||- ++|
T Consensus 49 ia~yL~r~~t~~sl~~IG~~fg~rdHsTV~~a~k 82 (110)
T d1l8qa1 49 IAMYLCRKVCSASLIEIARAFKRKDHTTVIHAIR 82 (110)
T ss_dssp HHHHHHHHHHCCCHHHHHHHSSCCCSTHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHH
T ss_conf 9999999870899999999958997109999999
No 11
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}
Probab=41.37 E-value=11 Score=17.29 Aligned_cols=34 Identities=9% Similarity=0.179 Sum_probs=30.1
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 7999999842455842434664387589999962
Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN 139 (192)
Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd 139 (192)
-.+++.+.++|.++-++|++..|.++.++..+=+
T Consensus 37 ~~vL~~l~~~~~~t~~ela~~~~i~~~~vs~~v~ 70 (138)
T d1jgsa_ 37 FKVLCSIRCAACITPVELKKVLSVDLGALTRMLD 70 (138)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9998868718098999999997878857999999
No 12
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=38.73 E-value=12 Score=17.09 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=29.6
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 7999999842455842434664387589999962
Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN 139 (192)
Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd 139 (192)
-.|+..+.++|.++-++|++..|-++++|..+=+
T Consensus 39 ~~vL~~l~~~~~~t~~~la~~l~~~~~~vsr~l~ 72 (141)
T d1lnwa_ 39 VHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIR 72 (141)
T ss_dssp HHHHHHHHSSTTCBHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999987998999999997845737999999
No 13
>d1d5ya2 a.4.1.8 (A:57-121) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=35.93 E-value=9.4 Score=17.68 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=19.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCH
Q ss_conf 4543024204347999996708712
Q gi|254780800|r 10 ASAVWLIDNTSLSFDQIAEFCGLHL 34 (192)
Q Consensus 10 ATAvWLvdNT~LtF~QIa~FC~lH~ 34 (192)
.-|..|+.+|.++..+||.-||..-
T Consensus 4 ~~A~~lL~~t~~~i~~IA~~~Gf~~ 28 (65)
T d1d5ya2 4 SKSAVALRLTARPILDIALQYRFDS 28 (65)
T ss_dssp HHHHHHHHHCCCCHHHHHHHTTCSC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCC
T ss_conf 9999998868999999999978998
No 14
>d1n5ua3 a.126.1.1 (A:389-584) Serum albumin {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.80 E-value=9.8 Score=17.57 Aligned_cols=30 Identities=17% Similarity=0.390 Sum_probs=23.7
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999999842455842434664387589999
Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQ 136 (192)
Q Consensus 107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~s 136 (192)
-|+.+.|+||++++.||-++...-...++.
T Consensus 140 fl~e~~rrhP~~~~~~ll~~a~~y~~~~~~ 169 (196)
T d1n5ua3 140 ALVELVKHKPKATKEQLKAVMDDFAAFVEK 169 (196)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999728878899999999999999998
No 15
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=35.09 E-value=12 Score=17.07 Aligned_cols=54 Identities=9% Similarity=0.095 Sum_probs=38.2
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC---CCCCCCCCCCCCCHHHCCC
Q ss_conf 79999998424558424346643875899999628---8877012683773322564
Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR---THWNTANLVPMDPVTLGLC 159 (192)
Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR---tHWN~~Ni~P~DPV~LGLC 159 (192)
-.|++.+.++++++-++|++..|-++++|..+=++ .-|=.-.-.|.|-=...+|
T Consensus 33 ~~vL~~l~~~~~~t~~~la~~~~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~ 89 (136)
T d2fbia1 33 WRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVN 89 (136)
T ss_dssp HHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHC
T ss_conf 999999997699899999999887898899999999988997984557657503330
No 16
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=34.16 E-value=11 Score=17.25 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=29.8
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 9999998424558424346643875899999628
Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR 140 (192)
Q Consensus 107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR 140 (192)
.|++.|..++.++-++|++..|.+++||..+-++
T Consensus 39 ~iL~~l~~~~~~t~~~la~~~~i~~~~vs~~l~~ 72 (143)
T d1s3ja_ 39 FVLASLKKHGSLKVSEIAERMEVKPSAVTLMADR 72 (143)
T ss_dssp HHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999999779989999999989698899999999
No 17
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}
Probab=33.08 E-value=17 Score=16.13 Aligned_cols=30 Identities=10% Similarity=0.214 Sum_probs=24.3
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 999999842455842434664387589999
Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQ 136 (192)
Q Consensus 107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~s 136 (192)
.|+=++...+.++-++|++.+|.+..||..
T Consensus 9 ~IL~~L~~n~r~s~~~iA~~lgis~~tv~~ 38 (63)
T d2cfxa1 9 NIIEELKKDSRLSMRELGRKIKLSPPSVTE 38 (63)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999999983999999999998968789999
No 18
>d1bl0a2 a.4.1.8 (A:63-124) MarA {Escherichia coli [TaxId: 562]}
Probab=32.51 E-value=12 Score=17.14 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=19.8
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCH
Q ss_conf 543024204347999996708712
Q gi|254780800|r 11 SAVWLIDNTSLSFDQIAEFCGLHL 34 (192)
Q Consensus 11 TAvWLvdNT~LtF~QIa~FC~lH~ 34 (192)
-|.-|+.+|.++..+||.-||..-
T Consensus 5 ~a~~lL~~t~~~i~~IA~~~Gf~~ 28 (62)
T d1bl0a2 5 EIAQKLKESNEPILYLAERYGFES 28 (62)
T ss_dssp HHHHHHHHCCCCHHHHHHHTTCSC
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCC
T ss_conf 999998836999999999987998
No 19
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}
Probab=31.22 E-value=15 Score=16.49 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=28.8
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 799999984245584243466438758999996
Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIR 138 (192)
Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIR 138 (192)
-.|++.+..+|.++-++|++..|-++.||..+=
T Consensus 36 ~~vL~~l~~~~~~t~~~La~~~~i~~~~vsr~i 68 (137)
T d1z91a1 36 YLALLLLWEHETLTVKKMGEQLYLDSGTLTPML 68 (137)
T ss_dssp HHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999999875899989999999796888897999
No 20
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=30.62 E-value=19 Score=15.88 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=27.1
Q ss_pred HHHHHHHHCCC-CCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 99999984245-5842434664387589999962
Q gi|254780800|r 107 AILWLIRNYPR-LKDAQISHLVGTTGSTIEQIRN 139 (192)
Q Consensus 107 AI~WLiknhPe-L~D~QI~KLiGTTK~TI~sIRd 139 (192)
.|+..+-+||+ ++-++|++..|-+++||..+=+
T Consensus 32 ~iL~~l~~~~~~~t~~~la~~~~~~~~~vs~~v~ 65 (137)
T d2fbha1 32 LVLLHLARHRDSPTQRELAQSVGVEGPTLARLLD 65 (137)
T ss_dssp HHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999998769997699999998978989999999
No 21
>d1ls6a_ c.37.1.5 (A:) Aryl sulfotransferase sult1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.47 E-value=6.6 Score=18.62 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=8.0
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 48999999999973
Q gi|254780800|r 159 CAQIDLDREIEKCS 172 (192)
Q Consensus 159 CsQ~dLd~av~KA~ 172 (192)
.+...++++|++++
T Consensus 208 ~~~~~i~~~v~~~s 221 (288)
T d1ls6a_ 208 LPEETVDFMVQHTS 221 (288)
T ss_dssp CCHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHCC
T ss_conf 01047888999667
No 22
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.30 E-value=19 Score=15.89 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 717999999842455842434664387589999
Q gi|254780800|r 104 RPNAILWLIRNYPRLKDAQISHLVGTTGSTIEQ 136 (192)
Q Consensus 104 kPdAI~WLiknhPeL~D~QI~KLiGTTK~TI~s 136 (192)
+--.|+.++....-++-.++++..|.+..||-.
T Consensus 6 ~~~~iL~~L~~~~~~s~~eLa~~l~vS~~ti~r 38 (63)
T d1biaa1 6 VPLKLIALLANGEFHSGEQLGETLGMSRAAINK 38 (63)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999999999978958799999998939999999
No 23
>d2z5fa_ c.37.1.5 (A:) Thyroid hormone sulfotransferase Sult1b1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.16 E-value=8.5 Score=17.95 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=9.2
Q ss_pred CHHHHHHHHHCCCCCEEC
Q ss_conf 899999976164877040
Q gi|254780800|r 61 SAEEIALGEKDKNYKLKI 78 (192)
Q Consensus 61 t~eEI~~ce~d~~~~L~l 78 (192)
....++...+++..++--
T Consensus 87 ~~~~~~~~~~~~~~r~ik 104 (293)
T d2z5fa_ 87 RTSGIEQLEKNPSPRIVK 104 (293)
T ss_dssp BCCHHHHHTTSCSSCEEE
T ss_pred CCCHHHHHHCCCCCCCHH
T ss_conf 401399984078864224
No 24
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=25.36 E-value=23 Score=15.31 Aligned_cols=35 Identities=14% Similarity=0.347 Sum_probs=28.7
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 79999998424558424346643875899999628
Q gi|254780800|r 106 NAILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR 140 (192)
Q Consensus 106 dAI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR 140 (192)
..-.+.++++-+++-.+|+...|.+.+||.+...|
T Consensus 26 ~r~v~~l~~~~~~s~~eIA~~lgis~~tv~~~~~r 60 (71)
T d1rp3a2 26 EKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAK 60 (71)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999868489999999979899999999999
No 25
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.16 E-value=23 Score=15.29 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=28.8
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC
Q ss_conf 9999998424558424346643875899999628
Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR 140 (192)
Q Consensus 107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR 140 (192)
.|...+..+|.++-+.|++..|-.++||..|...
T Consensus 15 ~ii~~~e~g~k~sq~eIA~~fGv~~STvs~IlKn 48 (66)
T d1hlva1 15 RIIQEVEENPDLRKGEIARRFNIPPSTLSTILKN 48 (66)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999998087210999999959976479999987
No 26
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Probab=24.29 E-value=24 Score=15.19 Aligned_cols=35 Identities=9% Similarity=-0.015 Sum_probs=30.3
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 99999842455842434664387589999962888
Q gi|254780800|r 108 ILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNRTH 142 (192)
Q Consensus 108 I~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdRtH 142 (192)
-.+.++++-+++-++|+...|.+..||.+.-.|.-
T Consensus 25 ~vl~L~~~e~ls~~EIA~~lgiS~~aV~~~l~Ra~ 59 (106)
T d1xsva_ 25 NYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTG 59 (106)
T ss_dssp HHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999087599999998959999999999999
No 27
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=23.26 E-value=25 Score=15.06 Aligned_cols=33 Identities=9% Similarity=0.106 Sum_probs=26.3
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHC
Q ss_conf 999999842455842434664387589999962
Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRN 139 (192)
Q Consensus 107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRd 139 (192)
.|+-.+-.++.++-.+|++..|-.++||..+-+
T Consensus 24 ~v~~~L~~~g~~t~~eia~~~~i~~~~v~~~l~ 56 (109)
T d1sfxa_ 24 RIYSLLLERGGMRVSEIARELDLSARFVRDRLK 56 (109)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf 999998823899899999985798355999999
No 28
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]}
Probab=22.63 E-value=9.3 Score=17.71 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCC-CCHHHCCCCHHHHHHHHHHHHH
Q ss_conf 55842434664387589999962888770126837-7332256489999999999730
Q gi|254780800|r 117 RLKDAQISHLVGTTGSTIEQIRNRTHWNTANLVPM-DPVTLGLCAQIDLDREIEKCSK 173 (192)
Q Consensus 117 eL~D~QI~KLiGTTK~TI~sIRdRtHWN~~Ni~P~-DPV~LGLCsQ~dLd~av~KA~~ 173 (192)
++....|..+||.--.||..|+++|.=.+ +|... ..|...-.++.....++.+|..
T Consensus 8 ~ip~~~ig~vIG~gG~~Ik~i~~~tg~~I-~Id~d~g~v~i~~~~~~~~~~a~~~a~~ 64 (84)
T d1tuaa1 8 KVKPERLGAVIGPRGEVKAEIMRRTGTVI-TVDTENSMVIVEPEAEGIPPVNLMKAAE 64 (84)
T ss_dssp ECCGGGHHHHHCGGGHHHHHHHHHHTEEE-EEETTTTEEEEEESSTTSCHHHHHHHHH
T ss_pred EECHHHCCEEECCCCHHHHHHHHHHCCEE-EEECCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 94978807333699553999999989889-9976997188743785325999999999
No 29
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=21.88 E-value=27 Score=14.90 Aligned_cols=46 Identities=13% Similarity=0.132 Sum_probs=32.6
Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHCC---CCCCCCCCCCCC
Q ss_conf 9999998424558424346643875899999628---887701268377
Q gi|254780800|r 107 AILWLIRNYPRLKDAQISHLVGTTGSTIEQIRNR---THWNTANLVPMD 152 (192)
Q Consensus 107 AI~WLiknhPeL~D~QI~KLiGTTK~TI~sIRdR---tHWN~~Ni~P~D 152 (192)
.++-.|..||.++-++|++..|-+++||..+=++ .-|=.-.-.|.|
T Consensus 33 ~iL~~i~~~~~~t~~~la~~l~i~~~tvs~~l~~L~~~glI~r~~~~~D 81 (144)
T d1lj9a_ 33 LYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASN 81 (144)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9999998289989999999878247169999999996032010578899
No 30
>d1q44a_ c.37.1.5 (A:) Putative steroid sulfotransferase rarO47 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=21.22 E-value=13 Score=16.81 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=10.3
Q ss_pred HCCC--CHHHHHHHHHHHH
Q ss_conf 2564--8999999999973
Q gi|254780800|r 156 LGLC--AQIDLDREIEKCS 172 (192)
Q Consensus 156 LGLC--sQ~dLd~av~KA~ 172 (192)
||+- ..++++++|+..+
T Consensus 241 Lg~~~~~~e~v~~iv~~~S 259 (320)
T d1q44a_ 241 LECGFIEEEEVREIVKLCS 259 (320)
T ss_dssp HCSSCCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHCC
T ss_conf 1365213899999999778
No 31
>d1dwka1 a.35.1.4 (A:1-86) Cyanase N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.63 E-value=18 Score=16.01 Aligned_cols=23 Identities=39% Similarity=0.374 Sum_probs=17.4
Q ss_pred HCCCCHHHHHHHHCCCHHHEEEE
Q ss_conf 04347999996708712051111
Q gi|254780800|r 18 NTSLSFDQIAEFCGLHLLEVMAI 40 (192)
Q Consensus 18 NT~LtF~QIa~FC~lH~LEVq~I 40 (192)
.-.|||++||+-+|+.+.=|-+.
T Consensus 24 ~kgltw~~IA~~iG~s~vwvtaa 46 (86)
T d1dwka1 24 KKDLSFAEIADGTGLAEAFVTAA 46 (86)
T ss_dssp HTTCCHHHHHTTSSSCHHHHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 83998999998959889999999
No 32
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.10 E-value=10 Score=17.42 Aligned_cols=30 Identities=17% Similarity=0.455 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCC
Q ss_conf 558424346643875899999628887701
Q gi|254780800|r 117 RLKDAQISHLVGTTGSTIEQIRNRTHWNTA 146 (192)
Q Consensus 117 eL~D~QI~KLiGTTK~TI~sIRdRtHWN~~ 146 (192)
.++..++..|||.--.+|..||+.|-=++.
T Consensus 13 ~IP~~~~g~iIG~~G~~i~~I~~~tg~~I~ 42 (79)
T d1x4na1 13 KVPDGMVGFIIGRGGEQISRIQQESGCKIQ 42 (79)
T ss_dssp EEEHHHHHHHHCSSSHHHHHHHHHSCCEEE
T ss_pred EECHHHHCCEECCCCHHHHHHHHHHCCEEE
T ss_conf 989675030289794148999997098899
Done!