BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780800|ref|YP_003065213.1| hypothetical protein CLIBASIA_03455 [Candidatus Liberibacter asiaticus str. psy62] (192 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780800|ref|YP_003065213.1| hypothetical protein CLIBASIA_03455 [Candidatus Liberibacter asiaticus str. psy62] Length = 192 Score = 399 bits (1026), Expect = e-113, Method: Compositional matrix adjust. Identities = 192/192 (100%), Positives = 192/192 (100%) Query: 1 MCQRPLMPKASAVWLIDNTSLSFDQIAEFCGLHLLEVMAIADGESLQGIKGFNLISSGQL 60 MCQRPLMPKASAVWLIDNTSLSFDQIAEFCGLHLLEVMAIADGESLQGIKGFNLISSGQL Sbjct: 1 MCQRPLMPKASAVWLIDNTSLSFDQIAEFCGLHLLEVMAIADGESLQGIKGFNLISSGQL 60 Query: 61 SAEEIALGEKDKNYKLKISKPKSYILESTKKKKRYTPVSKRQDRPNAILWLIRNYPRLKD 120 SAEEIALGEKDKNYKLKISKPKSYILESTKKKKRYTPVSKRQDRPNAILWLIRNYPRLKD Sbjct: 61 SAEEIALGEKDKNYKLKISKPKSYILESTKKKKRYTPVSKRQDRPNAILWLIRNYPRLKD 120 Query: 121 AQISHLVGTTGSTIEQIRNRTHWNTANLVPMDPVTLGLCAQIDLDREIEKCSKNTEAKYN 180 AQISHLVGTTGSTIEQIRNRTHWNTANLVPMDPVTLGLCAQIDLDREIEKCSKNTEAKYN Sbjct: 121 AQISHLVGTTGSTIEQIRNRTHWNTANLVPMDPVTLGLCAQIDLDREIEKCSKNTEAKYN 180 Query: 181 KAVDDISTPFSS 192 KAVDDISTPFSS Sbjct: 181 KAVDDISTPFSS 192 >gi|254780224|ref|YP_003064637.1| hypothetical protein CLIBASIA_00545 [Candidatus Liberibacter asiaticus str. psy62] Length = 382 Score = 23.9 bits (50), Expect = 2.0, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Query: 71 DKNYKLKISKPKSYILESTKKKKRYTPVSKRQDRPNAILWLIRNYPRLKDAQISHLVG 128 D + ++++S ++ L T K +S +D P+ +I + P LKD + L+G Sbjct: 52 DPSSRVRLSLARAIALSDTAPKHVVLALS--EDHPDVSGTIILHSPVLKDNDLVDLIG 107 >gi|254780290|ref|YP_003064703.1| quinone oxidoreductase [Candidatus Liberibacter asiaticus str. psy62] Length = 332 Score = 22.7 bits (47), Expect = 4.9, Method: Compositional matrix adjust. Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 9/57 (15%) Query: 115 YPRLKDAQISHLVGTTGSTIEQIRNRTHWNTANLVPMDPVTLGLCAQIDLDREIEKC 171 YP K+A + G ++ N THWN + V CA ++ E C Sbjct: 57 YPPPKNANPILGLEVAGKIVDLGENTTHWNIGDEV---------CALVNGGGYAEYC 104 >gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 573 Score = 21.9 bits (45), Expect = 7.1, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%) Query: 65 IALGEKDKNYKLKISKPKSYILESTKKKKRYTPVSKRQDRPNAILWLIRNYPRLKDA 121 + L E D+ L +IL+S+ KK+R S AI L +NY KDA Sbjct: 152 VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS--PAITTLAKNYQ--KDA 204 >gi|254780466|ref|YP_003064879.1| putative modification methylase [Candidatus Liberibacter asiaticus str. psy62] Length = 375 Score = 21.9 bits (45), Expect = 7.5, Method: Compositional matrix adjust. Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 17/103 (16%) Query: 52 FNLISSGQLSAEEIALGEKDKNYKLKISKPKSYILESTKKKKRYTPVSKRQDRPNAILWL 111 +NL +GQL + +L + + K S ++Y + + +R +PN LW+ Sbjct: 49 YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY----DAFTRAWLLACRRVLKPNGTLWV 104 Query: 112 IRNYPRLKDAQISHLVGTTGSTIEQ----IRNRTHWNTANLVP 150 I +Y H + G+ ++ I N W +N +P Sbjct: 105 IGSY---------HNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138 >gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str. psy62] Length = 470 Score = 21.6 bits (44), Expect = 9.3, Method: Compositional matrix adjust. Identities = 8/26 (30%), Positives = 16/26 (61%) Query: 112 IRNYPRLKDAQISHLVGTTGSTIEQI 137 I+N P++ D I+ + G TG ++ + Sbjct: 342 IKNLPQIGDIYINTISGRTGEGLDDL 367 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.132 0.383 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 120,733 Number of Sequences: 1233 Number of extensions: 4671 Number of successful extensions: 12 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 9 length of query: 192 length of database: 328,796 effective HSP length: 69 effective length of query: 123 effective length of database: 243,719 effective search space: 29977437 effective search space used: 29977437 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 36 (18.5 bits)