BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780800|ref|YP_003065213.1| hypothetical protein
CLIBASIA_03455 [Candidatus Liberibacter asiaticus str. psy62]
         (192 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780800|ref|YP_003065213.1| hypothetical protein CLIBASIA_03455 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 192

 Score =  399 bits (1026), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 192/192 (100%), Positives = 192/192 (100%)

Query: 1   MCQRPLMPKASAVWLIDNTSLSFDQIAEFCGLHLLEVMAIADGESLQGIKGFNLISSGQL 60
           MCQRPLMPKASAVWLIDNTSLSFDQIAEFCGLHLLEVMAIADGESLQGIKGFNLISSGQL
Sbjct: 1   MCQRPLMPKASAVWLIDNTSLSFDQIAEFCGLHLLEVMAIADGESLQGIKGFNLISSGQL 60

Query: 61  SAEEIALGEKDKNYKLKISKPKSYILESTKKKKRYTPVSKRQDRPNAILWLIRNYPRLKD 120
           SAEEIALGEKDKNYKLKISKPKSYILESTKKKKRYTPVSKRQDRPNAILWLIRNYPRLKD
Sbjct: 61  SAEEIALGEKDKNYKLKISKPKSYILESTKKKKRYTPVSKRQDRPNAILWLIRNYPRLKD 120

Query: 121 AQISHLVGTTGSTIEQIRNRTHWNTANLVPMDPVTLGLCAQIDLDREIEKCSKNTEAKYN 180
           AQISHLVGTTGSTIEQIRNRTHWNTANLVPMDPVTLGLCAQIDLDREIEKCSKNTEAKYN
Sbjct: 121 AQISHLVGTTGSTIEQIRNRTHWNTANLVPMDPVTLGLCAQIDLDREIEKCSKNTEAKYN 180

Query: 181 KAVDDISTPFSS 192
           KAVDDISTPFSS
Sbjct: 181 KAVDDISTPFSS 192


>gi|254780224|ref|YP_003064637.1| hypothetical protein CLIBASIA_00545 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 382

 Score = 23.9 bits (50), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 71  DKNYKLKISKPKSYILESTKKKKRYTPVSKRQDRPNAILWLIRNYPRLKDAQISHLVG 128
           D + ++++S  ++  L  T  K     +S  +D P+    +I + P LKD  +  L+G
Sbjct: 52  DPSSRVRLSLARAIALSDTAPKHVVLALS--EDHPDVSGTIILHSPVLKDNDLVDLIG 107


>gi|254780290|ref|YP_003064703.1| quinone oxidoreductase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 332

 Score = 22.7 bits (47), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 9/57 (15%)

Query: 115 YPRLKDAQISHLVGTTGSTIEQIRNRTHWNTANLVPMDPVTLGLCAQIDLDREIEKC 171
           YP  K+A     +   G  ++   N THWN  + V         CA ++     E C
Sbjct: 57  YPPPKNANPILGLEVAGKIVDLGENTTHWNIGDEV---------CALVNGGGYAEYC 104


>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 573

 Score = 21.9 bits (45), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 65  IALGEKDKNYKLKISKPKSYILESTKKKKRYTPVSKRQDRPNAILWLIRNYPRLKDA 121
           + L E D+   L       +IL+S+ KK+R    S       AI  L +NY   KDA
Sbjct: 152 VVLDEADEMLDLGFRDDIEFILDSSPKKRRMLMFSATIS--PAITTLAKNYQ--KDA 204


>gi|254780466|ref|YP_003064879.1| putative modification methylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 375

 Score = 21.9 bits (45), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 17/103 (16%)

Query: 52  FNLISSGQLSAEEIALGEKDKNYKLKISKPKSYILESTKKKKRYTPVSKRQDRPNAILWL 111
           +NL  +GQL   + +L +   +   K S  ++Y        + +    +R  +PN  LW+
Sbjct: 49  YNLQLNGQLYRPDHSLVDAVTDSWDKFSSFEAY----DAFTRAWLLACRRVLKPNGTLWV 104

Query: 112 IRNYPRLKDAQISHLVGTTGSTIEQ----IRNRTHWNTANLVP 150
           I +Y         H +   G+ ++     I N   W  +N +P
Sbjct: 105 IGSY---------HNIFRIGTMLQNLNFWILNDIVWRKSNPMP 138


>gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 470

 Score = 21.6 bits (44), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 112 IRNYPRLKDAQISHLVGTTGSTIEQI 137
           I+N P++ D  I+ + G TG  ++ +
Sbjct: 342 IKNLPQIGDIYINTISGRTGEGLDDL 367


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.132    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,733
Number of Sequences: 1233
Number of extensions: 4671
Number of successful extensions: 12
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 9
length of query: 192
length of database: 328,796
effective HSP length: 69
effective length of query: 123
effective length of database: 243,719
effective search space: 29977437
effective search space used: 29977437
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 36 (18.5 bits)