HHsearch alignment for GI: 254780801 and conserved domain: cd06828
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=98.28 E-value=2e-05 Score=57.76 Aligned_cols=162 Identities=19% Similarity=0.111 Sum_probs=106.6
Q ss_pred HHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECCCCC-CHHHHHCCCC-HHCCCCC
Q ss_conf 4418998718999999999-997298100012100011110-0000125873023024432-0013201110-0001222
Q gi|254780801|r 26 DSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGSLQS-NKVSEIVSLF-DVIETVS 101 (222)
Q Consensus 26 ~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~LQs-NKvk~i~~~~-~~Ihsvd 101 (222)
T Consensus 27 ~~~~i~yAvKaN~~~~il~~l~~~g~-g~dvaS~~El~~al~~G~~---~~~Ii~~gp~K~~~~i~~A~~~gv~~i-~~D 101 (373)
T cd06828 27 PGFKICYAVKANSNLAILKLLAEEGL-GADVVSGGELYRALKAGFP---PERIVFTGNGKSDEELELALELGILRI-NVD 101 (373)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCC-EEEEECHHHHHHHHHCCCC---HHHEEECCCCCCHHHHHHHHHCCCCEE-EEC
T ss_conf 89789998622799999999998599-1899799999999984999---545998176411378999997398567-629
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEEEECC------------CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEE-CCCCCC
Q ss_conf 2200134433333311430368897004------------665634657000122234431043110011101-154334
Q gi|254780801|r 102 REKTASLLSLEMIKQSRFLPVYIQVNTG------------YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMG 168 (222)
Q Consensus 102 s~~~a~~L~~~~~~~~~~~~vliQVN~~------------~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMt-i~p~~~ 168 (222)
T Consensus 102 s~~El~~i~~~~~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~~~~~~~~~~l~~~GlhfHvGS~~~ 181 (373)
T cd06828 102 SLSELERLGEIAPELGKGAPVALRVNPGVDAGTHPYISTGGKDSKFGIPLEQALEAYRRAKELPGLKLVGLHCHIGSQIL 181 (373)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
T ss_conf 99999999986276199854999988898877776231377532138999999999999985799846887886476668
Q ss_pred CCH---HHHHHHHHHHHH-----CCCCEECCC
Q ss_conf 520---589999999887-----589472247
Q gi|254780801|r 169 NPK---PHFYLLSEIARE-----CKLTKLSMG 192 (222)
Q Consensus 169 d~~---~~F~~l~~l~~~-----~~~~~LSmG 192 (222)
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~ldiG 213 (373)
T cd06828 182 DLEPFVEAAEKLLDLAAELRELGIDLEFLDLG 213 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
T ss_conf 87999999999999999999749986577436