HHsearch alignment for GI: 254780801 and conserved domain: cd06828

>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=98.28  E-value=2e-05  Score=57.76  Aligned_cols=162  Identities=19%  Similarity=0.111  Sum_probs=106.6

Q ss_pred             HHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECCCCC-CHHHHHCCCC-HHCCCCC
Q ss_conf             4418998718999999999-997298100012100011110-0000125873023024432-0013201110-0001222
Q gi|254780801|r   26 DSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGSLQS-NKVSEIVSLF-DVIETVS  101 (222)
Q Consensus        26 ~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~LQs-NKvk~i~~~~-~~Ihsvd  101 (222)
T Consensus        27 ~~~~i~yAvKaN~~~~il~~l~~~g~-g~dvaS~~El~~al~~G~~---~~~Ii~~gp~K~~~~i~~A~~~gv~~i-~~D  101 (373)
T cd06828          27 PGFKICYAVKANSNLAILKLLAEEGL-GADVVSGGELYRALKAGFP---PERIVFTGNGKSDEELELALELGILRI-NVD  101 (373)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHCC-EEEEECHHHHHHHHHCCCC---HHHEEECCCCCCHHHHHHHHHCCCCEE-EEC
T ss_conf             89789998622799999999998599-1899799999999984999---545998176411378999997398567-629


Q ss_pred             CCCHHHHHHHHHHHHCCCEEEEEEEECC------------CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEE-CCCCCC
Q ss_conf             2200134433333311430368897004------------665634657000122234431043110011101-154334
Q gi|254780801|r  102 REKTASLLSLEMIKQSRFLPVYIQVNTG------------YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMG  168 (222)
Q Consensus       102 s~~~a~~L~~~~~~~~~~~~vliQVN~~------------~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMt-i~p~~~  168 (222)
T Consensus       102 s~~El~~i~~~~~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~~~~~~~~~~l~~~GlhfHvGS~~~  181 (373)
T cd06828         102 SLSELERLGEIAPELGKGAPVALRVNPGVDAGTHPYISTGGKDSKFGIPLEQALEAYRRAKELPGLKLVGLHCHIGSQIL  181 (373)
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
T ss_conf             99999999986276199854999988898877776231377532138999999999999985799846887886476668


Q ss_pred             CCH---HHHHHHHHHHHH-----CCCCEECCC
Q ss_conf             520---589999999887-----589472247
Q gi|254780801|r  169 NPK---PHFYLLSEIARE-----CKLTKLSMG  192 (222)
Q Consensus       169 d~~---~~F~~l~~l~~~-----~~~~~LSmG  192 (222)
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~ldiG  213 (373)
T cd06828         182 DLEPFVEAAEKLLDLAAELRELGIDLEFLDLG  213 (373)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
T ss_conf             87999999999999999999749986577436