HHsearch alignment for GI: 254780801 and conserved domain: cd06839
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=98.57 E-value=1.4e-06 Score=65.49 Aligned_cols=178 Identities=12% Similarity=0.052 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECCCCC
Q ss_conf 99999999999998198964418998718999999999-997298100012100011110-0000125873023024432
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGSLQS 84 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~LQs 84 (222)
T Consensus 14 ~~~i~~~~~~l~~al---p~~~~i~YAvKaN~~~~vl~~l~~~G~-g~DvaS~~El~~al~~G~~---~~~Ii~~gp~K~ 86 (382)
T cd06839 14 RDRVRERYAALRAAL---PPAIEIYYSLKANPNPALVAHLRQLGD-GAEVASAGELALALEAGVP---PEKILFAGPGKS 86 (382)
T ss_pred HHHHHHHHHHHHHHC---CCCCEEEEEECCCCCHHHHHHHHHCCC-EEEEECHHHHHHHHHCCCC---CCCEEEECCCCC
T ss_conf 999999999999858---999759999704899999999997499-0999899999999985999---531076168788
Q ss_pred -CHHHHHCCCC-HHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC-----------CCCCCCCCCCCHHHHHHHHHHC
Q ss_conf -0013201110-00012222200134433333311430368897004-----------6656346570001222344310
Q gi|254780801|r 85 -NKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG-----------YEIQKSGIMPNQTKDFVILCRQ 151 (222)
Q Consensus 85 -NKvk~i~~~~-~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~-----------~e~~K~G~~p~el~~l~~~i~~ 151 (222)
T Consensus 87 ~~~l~~a~~~gv~~i-~~Ds~~El~~i~~~a~~~~~~~~v~lRinp~~~~~~~~~~~~g~~skFGi~~~~~~~~~~~~~~ 165 (382)
T cd06839 87 DAELRRAIEAGIGTI-NVESLEELERIDALAEEHGVVARVALRINPDFELKGSGMKMGGGPSQFGIDVEELPAVLARIAA 165 (382)
T ss_pred HHHHHHHHHCCCCEE-ECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 899999998399576-4386799999999998639974699998158877877614478854458999999999999984
Q ss_pred CCCCCHHHHEE-CCCCCCCCH-------HHHHHHHHHHHHCC--CCEECCC
Q ss_conf 43110011101-154334520-------58999999988758--9472247
Q gi|254780801|r 152 KYQLNVEGLMC-IPPAMGNPK-------PHFYLLSEIARECK--LTKLSMG 192 (222)
Q Consensus 152 ~~~L~i~GLMt-i~p~~~d~~-------~~F~~l~~l~~~~~--~~~LSmG 192 (222)
T Consensus 166 ~~~l~~~Glh~H~GS~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~idiG 216 (382)
T cd06839 166 LPNLRFVGLHIYPGTQILDADALIEAFRQTLALALRLAEELGLPLEFLDLG 216 (382)
T ss_pred CCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 689837888983577778979999999999999999898659885177505