HHsearch alignment for GI: 254780801 and conserved domain: cd06842
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=98.06 E-value=8.4e-05 Score=53.63 Aligned_cols=180 Identities=12% Similarity=0.050 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHH-HHCCCCCCCCCEEEECCCCCC
Q ss_conf 9999999999998198964418998718999999999-99729810001210001111-000001258730230244320
Q gi|254780801|r 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKK-WIPLRKEWDVQLRFIGSLQSN 85 (222)
Q Consensus 8 ~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K-~~~l~~~~~i~wHfIG~LQsN 85 (222)
T Consensus 18 ~~ir~n~~~l~~a~~~~~~~~~i~YAvKAN~~~~il~~l~~~G~-g~Dv~S~gEl~~al~aG~~---~~~Iv~~g~~Ks~ 93 (423)
T cd06842 18 QTFRENIAALRAVLDRHGVDGRVYFARKANKSLALVRAAAAAGI-GVDVASLAELRQALAAGVR---GDRIVATGPAKTD 93 (423)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCC---HHHEEECCCCCCH
T ss_conf 99999999999998755998269998610689999999998499-2898699999999985998---7998973898998
Q ss_pred H-HHHHCCCCHHCCCCCCCCHHHHHHHHHHHH-CCCEEEEEEEE--CCCCCCCCCCCCCHHHHHHHHHHC-CCCCCHHHH
Q ss_conf 0-132011100001222220013443333331-14303688970--046656346570001222344310-431100111
Q gi|254780801|r 86 K-VSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRFLPVYIQVN--TGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGL 160 (222)
Q Consensus 86 K-vk~i~~~~~~Ihsvds~~~a~~L~~~~~~~-~~~~~vliQVN--~~~e~~K~G~~p~el~~l~~~i~~-~~~L~i~GL 160 (222)
T Consensus 94 ~ei~~Ai~~gv~i-~vDs~~El~~l~~~a~~~~~~~~~V~lRvnp~~~~~~sKFGi~~~~~~~~l~~~~~~~~~l~~~Gl 172 (423)
T cd06842 94 EFLWLAVRHGATI-AVDSLDELDRLLALARGYTTGPARVLLRLSPFPASLPSRFGMPAAEVRTALERLAQLRERVRLVGF 172 (423)
T ss_pred HHHHHHHHCCCEE-EECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 9999999859989-978999999999998760799627999867899999999989999999999999963999836898
Q ss_pred EE-CCCCCCCC-HHHHHHHHHHHHH-----CCCCEECCC
Q ss_conf 01-15433452-0589999999887-----589472247
Q gi|254780801|r 161 MC-IPPAMGNP-KPHFYLLSEIARE-----CKLTKLSMG 192 (222)
Q Consensus 161 Mt-i~p~~~d~-~~~F~~l~~l~~~-----~~~~~LSmG 192 (222)
T Consensus 173 H~HiGs~~~~~~~~a~~~~~~~~~~~~~~g~~l~~idiG 211 (423)
T cd06842 173 HFHLDGYSAAQRVAALQECLPLIDRARALGLAPRFIDIG 211 (423)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 886488772789999999999999999529997789718