HHsearch alignment for GI: 254780801 and conserved domain: cd06842

>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=98.06  E-value=8.4e-05  Score=53.63  Aligned_cols=180  Identities=12%  Similarity=0.050  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHH-HHCCCCCCCCCEEEECCCCCC
Q ss_conf             9999999999998198964418998718999999999-99729810001210001111-000001258730230244320
Q gi|254780801|r    8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKK-WIPLRKEWDVQLRFIGSLQSN   85 (222)
Q Consensus         8 ~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K-~~~l~~~~~i~wHfIG~LQsN   85 (222)
T Consensus        18 ~~ir~n~~~l~~a~~~~~~~~~i~YAvKAN~~~~il~~l~~~G~-g~Dv~S~gEl~~al~aG~~---~~~Iv~~g~~Ks~   93 (423)
T cd06842          18 QTFRENIAALRAVLDRHGVDGRVYFARKANKSLALVRAAAAAGI-GVDVASLAELRQALAAGVR---GDRIVATGPAKTD   93 (423)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCC---HHHEEECCCCCCH
T ss_conf             99999999999998755998269998610689999999998499-2898699999999985998---7998973898998


Q ss_pred             H-HHHHCCCCHHCCCCCCCCHHHHHHHHHHHH-CCCEEEEEEEE--CCCCCCCCCCCCCHHHHHHHHHHC-CCCCCHHHH
Q ss_conf             0-132011100001222220013443333331-14303688970--046656346570001222344310-431100111
Q gi|254780801|r   86 K-VSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRFLPVYIQVN--TGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGL  160 (222)
Q Consensus        86 K-vk~i~~~~~~Ihsvds~~~a~~L~~~~~~~-~~~~~vliQVN--~~~e~~K~G~~p~el~~l~~~i~~-~~~L~i~GL  160 (222)
T Consensus        94 ~ei~~Ai~~gv~i-~vDs~~El~~l~~~a~~~~~~~~~V~lRvnp~~~~~~sKFGi~~~~~~~~l~~~~~~~~~l~~~Gl  172 (423)
T cd06842          94 EFLWLAVRHGATI-AVDSLDELDRLLALARGYTTGPARVLLRLSPFPASLPSRFGMPAAEVRTALERLAQLRERVRLVGF  172 (423)
T ss_pred             HHHHHHHHCCCEE-EECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf             9999999859989-978999999999998760799627999867899999999989999999999999963999836898


Q ss_pred             EE-CCCCCCCC-HHHHHHHHHHHHH-----CCCCEECCC
Q ss_conf             01-15433452-0589999999887-----589472247
Q gi|254780801|r  161 MC-IPPAMGNP-KPHFYLLSEIARE-----CKLTKLSMG  192 (222)
Q Consensus       161 Mt-i~p~~~d~-~~~F~~l~~l~~~-----~~~~~LSmG  192 (222)
T Consensus       173 H~HiGs~~~~~~~~a~~~~~~~~~~~~~~g~~l~~idiG  211 (423)
T cd06842         173 HFHLDGYSAAQRVAALQECLPLIDRARALGLAPRFIDIG  211 (423)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             886488772789999999999999999529997789718