HHsearch alignment for GI: 254780801 and conserved domain: cd07376
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=99.05 E-value=2.6e-09 Score=83.99 Aligned_cols=203 Identities=18% Similarity=0.218 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHH-HHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECC
Q ss_conf 8999999999999999981989644189987189999999-999972981000121000111100000125873023024
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKI-RVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I-~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~ 81 (222)
T Consensus 2 le~Ni~~m~~~~~---------~~g~~lRPH~KThK~~~i~~~ql~~Ga~gi~~atl~EAe~~~~~G--~~dIl~a~--p 68 (345)
T cd07376 2 LEANISRMAARAR---------ASGVRLRPHVKTHKSPELAQRQLAAGARGVTVATLAEAETFAEAG--VKDILMAY--P 68 (345)
T ss_pred HHHHHHHHHHHHH---------HCCCCEEEEECHHCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCC--CCCEEEEC--C
T ss_conf 7899999999999---------769976677500048999999986799709994699999999769--98389966--8
Q ss_pred C-CCCHHHHHCCC----CHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHH--HHHHHHHHCCCC
Q ss_conf 4-32001320111----0000122222001344333333114303688970046656346570001--222344310431
Q gi|254780801|r 82 L-QSNKVSEIVSL----FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT--KDFVILCRQKYQ 154 (222)
Q Consensus 82 L-QsNKvk~i~~~----~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el--~~l~~~i~~~~~ 154 (222)
T Consensus 69 i~~~~~l~rl~~l~~~~~~i~~~VDs~~~~~~l~~~a~~~~~~~~V~ievD~G--~~R~Gv~~~~~~~l~l~~~i~~~~~ 146 (345)
T cd07376 69 LVGPAAIARLAGLLRQEAEFHVLVDSPEALAALAAFAAAHGVRLRVMLEVDVG--GHRSGVRPEEAAALALADAVQASPG 146 (345)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEECCC--CCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 89989999999986349838999708999999999998659827899997889--9858888877999999999853999
Q ss_pred CCHHHHEECCCCC---CCC--H-----HHHHHHHHHH----HHCCCCEECCCCCHHHHHHHHH-CCCEEEECHHHCCCCC
Q ss_conf 1001110115433---452--0-----5899999998----8758947224777348999980-8988997113238999
Q gi|254780801|r 155 LNVEGLMCIPPAM---GNP--K-----PHFYLLSEIA----RECKLTKLSMGMTRDFELAIAS-GATSVRIGSGIFGERP 219 (222)
Q Consensus 155 L~i~GLMti~p~~---~d~--~-----~~F~~l~~l~----~~~~~~~LSmGMS~D~~~Ai~~-Gst~vRiGs~iFG~R~ 219 (222)
T Consensus 147 l~l~G~~~y~Gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~vs~GgTpt~~~~~~~~~~tEl~~G~yvf~D~~ 226 (345)
T cd07376 147 LRLAGVMAYEGHIYGAGGAREGAQARDQAVAAVRAAAAAAERGLACPTVSGGGTPTYQLTAGDRAVTELRAGSYVFMDTG 226 (345)
T ss_pred EEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCCEEECCCEEEECCHH
T ss_conf 18989997471206999989999999999999999999986499988895578887410336887328746348964213
Q ss_pred C
Q ss_conf 9
Q gi|254780801|r 220 C 220 (222)
Q Consensus 220 ~ 220 (222)
T Consensus 227 ~ 227 (345)
T cd07376 227 F 227 (345)
T ss_pred H
T ss_conf 2