HHsearch results for GI: 254780801 and protein with PDBid: 2vd8_A
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=99.46 E-value=6.6e-13 Score=106.67 Aligned_cols=205 Identities=17% Similarity=0.146 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCC----CCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECC
Q ss_conf 999999999999981989644189987189----9999999-99972981000121000111100000125873023024
Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81 (222)
Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~----~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~ 81 (222)
++.++.+++...++. ++.++++||.|. +....|. .+.++|++.||-.+++|+.+=...- .+...-..|+
T Consensus 18 l~al~~N~~~i~~~~---~~~~~i~aVVKanAYGhG~~~va~~l~~~Gi~~faVa~~~EA~~LR~~g---i~~~Ilvl~~ 91 (391)
T 2vd8_A 18 LDAIYNNVTHIXEFI---PSDVEIFAVVKGNAYGHDYVPVAXIALEAGATRLAVAFLDEALVLRRAG---ITAPILVLGP 91 (391)
T ss_dssp HHHHHHHHHHHHHHS---CTTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTT---CCSCEEECSC
T ss_pred HHHHHHHHHHHHHHC---CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCC---CCCCEEEEEC
T ss_conf 999999999999747---9998799999150264788999999998698999991699999999719---9997799748
Q ss_pred CCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCC-HHHHHHHHHHCCCCCCHHHH
Q ss_conf 43200132011100001222220013443333331143036889700466563465700-01222344310431100111
Q gi|254780801|r 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVEGL 160 (222)
Q Consensus 82 LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~-el~~l~~~i~~~~~L~i~GL 160 (222)
....-+..++. .+.+-++.+...+..+...+ +.++++++.|.|+|+ .+|.||.|+ ++.+++..+..+++|++.|+
T Consensus 92 ~~~~~~~~~~~-~~~~~~i~s~~~l~~~~~~~-~~~~~~~vhlkiDTG--M~RlG~~~~~e~~~~~~~i~~~~~l~i~Gi 167 (391)
T 2vd8_A 92 SPPRDINVAAE-NDVALTVFQXEWVDEAIXLW-DGSSTMXYHINFDSG--MGRIGIRERXELXGFLXSLEGAPFLELEGV 167 (391)
T ss_dssp CCGGGHHHHHH-TTEEEECCCHHHHHHHHHHC-CSSCCEEEEEEBCSS--CCSSSBCCHHHHHHHHHHHTTCTTEEEEEE
T ss_pred CCHHHHHHHHH-CCCCEEECHHHHHHHHHHHH-HCCCCEEEEEEECCC--CCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 88256556542-05320340599999999986-046864899996379--886788741468999999972899650367
Q ss_pred EECCCCCCCC-----HHHHHHHHHHHH---HCC--CCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC
Q ss_conf 0115433452-----058999999988---758--947224777348999980898899711323899999
Q gi|254780801|r 161 MCIPPAMGNP-----KPHFYLLSEIAR---ECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222)
Q Consensus 161 Mti~p~~~d~-----~~~F~~l~~l~~---~~~--~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222)
||==+..+++ ..++..+.++.. +.. ....++.-|.-.-.--+..-+|||+|.++||-.|..
T Consensus 168 ~THfa~ad~~~~~~~~~Q~~~F~~~~~~~~~~~~~~~~~h~anS~a~l~~~~~~~d~VR~Gi~lYG~~p~~ 238 (391)
T 2vd8_A 168 YTHFATADEVETSYFDXQYNTFLEQLSWLXEFGVDPXFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSV 238 (391)
T ss_dssp ECCCSSTTSSSCHHHHHHHHHHHHHHHHHHHTTCCCCSEECCCHHHHTTCTTCCTTEEEESTTTTTCCSCT
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCCCCCCEECCCCEECCCCCC
T ss_conf 61227677654056789999999999999862898320552276766467523577340682014777763