HHsearch results for GI: 254780801 and protein with PDBid: 3gwq_A
>3gwq_A D-serine deaminase; YP_556991.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=99.24 E-value=4e-11 Score=94.73 Aligned_cols=200 Identities=11% Similarity=0.120 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEE--
Q ss_conf 89999999999999999819896441899871899999999-999729810001210001111000001258730230--
Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFI-- 79 (222)
Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfI-- 79 (222)
|.+|++.+++... ...+++-++.|++..-+|. .+.++|..-|+-..++|++.-... .+..=++
T Consensus 56 l~~Ni~~m~~~~~---------~~gv~lrph~Kth~s~~va~~~l~~Ga~g~~vatl~Ea~~l~~~-----Gi~~illa~ 121 (426)
T 3gwq_A 56 VEHNLKWMQAFVA---------EYGVKLAPHGKTTMAPQLFRRQLETGAWGITLATAHQVRAAYHG-----GVSRVLMAN 121 (426)
T ss_dssp HHHHHHHHHHHHH---------HHCCEECCBCTTTCCHHHHHHHHHTTCCCEEESSHHHHHHHHHT-----TCCEEEECS
T ss_pred HHHHHHHHHHHHH---------HCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHC-----CCCCEEEEC
T ss_conf 9999999999887---------56974999811146499999999779987998609999999976-----999879946
Q ss_pred CCCCCCHHHHHCCC-----CHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC-CCHHHHHHHHHHCCC
Q ss_conf 24432001320111-----000012222200134433333311430368897004665634657-000122234431043
Q gi|254780801|r 80 GSLQSNKVSEIVSL-----FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM-PNQTKDFVILCRQKY 153 (222)
Q Consensus 80 G~LQsNKvk~i~~~-----~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~-p~el~~l~~~i~~~~ 153 (222)
+...+.+++.+..+ ...+-+|||...++.|++.+.+.+++++|+|+|+++ ..|.|+. ++++.++++.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~~~~~~~V~i~vDtG--~~R~G~~~~e~~~~l~~~i~~~~ 199 (426)
T 3gwq_A 122 QLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNKQLQVLLELGVP--GGRTGVRDAAQRNAVLEAITRYP 199 (426)
T ss_dssp CCCSHHHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCCEEEEEEECCT--TSSSSBCSHHHHHHHHHHHHTST
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEEEECCCC--CCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 7789799999999863557405999878999999999887568068987650567--76566666589999999998577
Q ss_pred -CCCHHHHEECCCCCCCC---HHHHH----HHHHHHHHCC----CCEECCCCCHHHHHHHHH---------CCCEEEECH
Q ss_conf -11001110115433452---05899----9999988758----947224777348999980---------898899711
Q gi|254780801|r 154 -QLNVEGLMCIPPAMGNP---KPHFY----LLSEIARECK----LTKLSMGMTRDFELAIAS---------GATSVRIGS 212 (222)
Q Consensus 154 -~L~i~GLMti~p~~~d~---~~~F~----~l~~l~~~~~----~~~LSmGMS~D~~~Ai~~---------Gst~vRiGs 212 (222)
++.+.|+|+-.....+. .+.+. .++.+.+... ...+|.|-|.-|..+... +.++||.|+
T Consensus 200 ~~l~l~Gi~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ggs~~~~~~~~~~~~~~~~~~~~~~vrpG~ 279 (426)
T 3gwq_A 200 DTLKLAGVELYEGVLKEEHEVREFLQSAVAVTRELVEQERFARAPAVLSGAGSAWYDVVAEEFVKASETGKVEVVLRPGC 279 (426)
T ss_dssp TTEEEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHHHHTCCSSSSEEEEECCSTTHHHHHHHTHHHHHSSSEEEEECCCC
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCEEEECCEE
T ss_conf 88656699851533477343999999999999999998532788704644688540100331002556764026973447
Q ss_pred HHCCCC
Q ss_conf 323899
Q gi|254780801|r 213 GIFGER 218 (222)
Q Consensus 213 ~iFG~R 218 (222)
.+|+..
T Consensus 280 ~l~~D~ 285 (426)
T 3gwq_A 280 YLTHDV 285 (426)
T ss_dssp SSSSCS
T ss_pred EEEECC
T ss_conf 997046