Query gi|254780801|ref|YP_003065214.1| hypothetical protein CLIBASIA_03460 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 222 No_of_seqs 125 out of 3258 Neff 5.9 Searched_HMMs 23785 Date Mon May 30 12:55:09 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780801.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3cpg_A Uncharacterized protein 100.0 0 0 587.5 17.4 220 2-221 24-274 (282) 2 1w8g_A YGGS, hypothetical UPF0 100.0 0 0 585.6 18.5 221 1-221 1-232 (234) 3 1ct5_A Protein (yeast hypothet 100.0 0 0 538.2 16.2 218 2-221 13-250 (256) 4 3kw3_A Alanine racemase; niaid 99.6 8.4E-15 3.5E-19 119.5 10.0 206 7-221 27-242 (376) 5 1xfc_A Alanine racemase; alpha 99.6 5E-14 2.1E-18 114.2 12.9 204 7-220 18-239 (384) 6 3e5p_A Alanine racemase; ALR, 99.5 2.8E-13 1.2E-17 109.2 9.6 206 6-220 14-233 (371) 7 2vd8_A Alanine racemase; pyrid 99.5 6.6E-13 2.8E-17 106.7 11.3 205 7-221 18-238 (391) 8 1vfs_A Alanine racemase; TIM-b 99.4 1.1E-12 4.5E-17 105.3 11.6 205 6-220 13-235 (386) 9 1bd0_A Alanine racemase; isome 99.4 3E-12 1.2E-16 102.3 12.2 205 7-221 14-231 (388) 10 3llx_A Predicted amino acid al 99.4 2.7E-13 1.1E-17 109.3 6.3 204 7-220 21-245 (376) 11 1rcq_A Catabolic alanine racem 99.4 3.6E-12 1.5E-16 101.8 11.3 187 27-221 25-220 (357) 12 2dy3_A Alanine racemase; alpha 99.4 8.3E-12 3.5E-16 99.3 11.7 203 6-221 9-226 (361) 13 3co8_A Alanine racemase; prote 99.3 3.5E-11 1.5E-15 95.1 13.0 203 7-221 16-234 (380) 14 3oo2_A Alanine racemase 1; inf 99.2 6.4E-11 2.7E-15 93.3 10.6 204 7-220 18-233 (385) 15 3gwq_A D-serine deaminase; YP_ 99.2 4E-11 1.7E-15 94.7 9.5 200 3-218 56-285 (426) 16 3hur_A Alanine racemase; struc 99.2 1.9E-10 8.1E-15 90.1 12.8 201 7-221 16-236 (395) 17 2rjg_A Alanine racemase; alpha 99.1 9.5E-10 4E-14 85.4 11.5 199 3-221 33-241 (379) 18 2p3e_A Diaminopimelate decarbo 97.9 0.0002 8.3E-09 49.7 11.3 168 8-182 42-227 (420) 19 3n2o_A ADC, biosynthetic argin 97.9 0.00028 1.2E-08 48.6 11.4 177 3-182 74-278 (648) 20 3nzq_A ADC, biosynthetic argin 97.9 0.00052 2.2E-08 46.8 12.7 177 3-183 96-296 (666) 21 3n2b_A Diaminopimelate decarbo 97.8 0.00032 1.3E-08 48.3 10.5 179 8-192 60-262 (441) 22 2qgh_A Diaminopimelate decarbo 97.6 0.00078 3.3E-08 45.6 10.4 159 7-171 40-214 (425) 23 3nzp_A Arginine decarboxylase; 97.6 0.0015 6.3E-08 43.7 11.8 178 3-183 55-257 (619) 24 2j66_A BTRK, decarboxylase; bu 97.2 0.0043 1.8E-07 40.6 10.2 158 8-172 25-197 (428) 25 2plj_A Lysine/ornithine decarb 97.1 0.0027 1.1E-07 42.0 8.7 176 8-192 63-253 (419) 26 3btn_A Antizyme inhibitor 1; T 96.5 0.0079 3.3E-07 38.9 7.2 175 8-195 46-240 (448) 27 1f3t_A ODC, ornithine decarbox 96.5 0.016 6.9E-07 36.7 8.8 152 7-171 45-206 (425) 28 1twi_A Diaminopimelate decarbo 96.4 0.066 2.8E-06 32.7 13.2 162 3-171 40-219 (434) 29 7odc_A Protein (ornithine deca 96.1 0.069 2.9E-06 32.6 10.1 153 7-172 45-207 (424) 30 2o0t_A Diaminopimelate decarbo 95.9 0.042 1.8E-06 34.0 8.0 157 8-172 50-225 (467) 31 3n29_A Carboxynorspermidine de 95.5 0.16 6.6E-06 30.1 9.8 111 26-146 68-192 (418) 32 2oo0_A ODC, ornithine decarbox 95.0 0.24 1E-05 28.9 10.3 171 8-192 56-245 (471) 33 2nva_A Arginine decarboxylase, 94.4 0.3 1.2E-05 28.3 8.7 137 26-171 39-185 (372) 34 1h1y_A D-ribulose-5-phosphate 91.2 0.86 3.6E-05 25.2 7.4 73 148-220 132-210 (228) 35 3mt1_A Putative carboxynorsper 91.0 0.96 4E-05 24.9 10.1 150 27-192 29-197 (365) 36 3ajx_A 3-hexulose-6-phosphate 91.0 0.27 1.1E-05 28.5 4.6 152 52-220 38-195 (207) 37 3f4w_A Putative hexulose 6 pho 89.6 0.31 1.3E-05 28.1 3.9 151 52-219 38-195 (211) 38 2fli_A Ribulose-phosphate 3-ep 85.3 1.2 4.9E-05 24.3 4.8 69 152-220 129-207 (220) 39 2yxx_A Diaminopimelate decarbo 83.9 2.5 0.00011 22.0 10.7 174 8-192 21-212 (386) 40 1rpx_A Protein (ribulose-phosp 83.1 2 8.3E-05 22.7 5.2 68 153-220 139-216 (230) 41 1knw_A Diaminopimelate decarbo 83.0 2.7 0.00012 21.8 8.7 143 28-178 47-206 (425) 42 3inp_A D-ribulose-phosphate 3- 81.5 2.8 0.00012 21.7 5.5 67 153-219 155-231 (246) 43 1q6o_A Humps, 3-keto-L-gulonat 81.3 1.4 6.1E-05 23.7 3.9 151 53-219 42-199 (216) 44 1tqj_A Ribulose-phosphate 3-ep 80.6 2.8 0.00012 21.7 5.2 68 153-220 133-210 (230) 45 3ldv_A Orotidine 5'-phosphate 79.8 2 8.6E-05 22.6 4.3 160 52-219 65-242 (255) 46 3exr_A RMPD (hexulose-6-phosph 74.1 1.1 4.6E-05 24.4 1.6 159 52-220 43-205 (221) 47 3ctl_A D-allulose-6-phosphate 74.1 5 0.00021 20.0 5.6 69 152-220 126-206 (231) 48 1tqx_A D-ribulose-5-phosphate 72.5 5.5 0.00023 19.8 6.3 68 153-220 137-210 (227) 49 3l5l_A Xenobiotic reductase A; 70.6 6 0.00025 19.5 5.6 116 102-217 207-331 (363) 50 1eix_A Orotidine 5'-monophosph 67.2 6.4 0.00027 19.3 4.3 140 72-219 70-229 (245) 51 1vqt_A Orotidine 5'-phosphate 63.2 6.6 0.00028 19.2 3.7 140 54-219 47-200 (213) 52 1to3_A Putative aldolase YIHT; 61.0 9.1 0.00038 18.3 8.9 108 104-216 142-259 (304) 53 3jr2_A Hexulose-6-phosphate sy 59.6 3.7 0.00015 20.9 1.9 150 52-218 44-201 (218) 54 3n9r_A Fructose-bisphosphate a 58.8 9.9 0.00042 18.0 4.7 97 118-215 125-259 (307) 55 2yyu_A Orotidine 5'-phosphate 58.3 7.4 0.00031 18.9 3.3 157 52-219 42-223 (246) 56 2wf7_A Beta-PGM, beta-phosphog 54.9 8.5 0.00036 18.5 3.1 37 177-213 151-191 (221) 57 3cu2_A Ribulose-5-phosphate 3- 53.9 12 0.0005 17.5 5.0 66 152-217 146-223 (237) 58 3m47_A Orotidine 5'-phosphate 49.4 6.5 0.00027 19.2 1.8 152 53-219 51-210 (228) 59 1z41_A YQJM, probable NADH-dep 42.7 18 0.00074 16.4 7.6 114 102-217 193-313 (338) 60 3hgj_A Chromate reductase; TIM 42.3 18 0.00075 16.3 8.7 100 116-217 216-324 (349) 61 3g3d_A UMP synthase, uridine 5 40.5 7.2 0.0003 19.0 0.9 181 28-219 84-290 (312) 62 1y8q_B Anthracycline-, ubiquit 33.2 25 0.001 15.4 6.1 71 49-120 64-136 (640) 63 1dbt_A Orotidine 5'-phosphate 30.9 27 0.0011 15.1 3.4 155 53-219 42-222 (239) 64 1vrd_A Inosine-5'-monophosphat 30.0 28 0.0012 15.0 2.7 51 171-221 323-379 (494) 65 1zfj_A Inosine monophosphate d 27.7 30 0.0013 14.8 2.9 49 172-220 320-374 (491) 66 2czd_A Orotidine 5'-phosphate 27.6 30 0.0013 14.8 3.0 148 53-219 38-193 (208) 67 3do6_A Formate--tetrahydrofola 27.1 31 0.0013 14.7 6.3 158 5-171 344-527 (543) 68 1gvf_A Tagatose-bisphosphate a 27.0 31 0.0013 14.7 4.5 75 138-215 156-236 (286) 69 3ffs_A Inosine-5-monophosphate 25.8 33 0.0014 14.5 2.9 49 171-219 229-283 (400) 70 3gr7_A NADPH dehydrogenase; fl 25.1 34 0.0014 14.5 8.3 97 120-217 210-313 (340) 71 2ox1_A 3-dehydroquinate dehydr 24.8 23 0.00095 15.6 1.3 21 73-93 77-97 (196) 72 1qwl_A KATA catalase; beta bar 24.2 35 0.0015 14.4 3.1 60 105-166 242-302 (505) 73 3lz8_A Putative chaperone DNAJ 24.0 13 0.00056 17.2 0.0 44 26-69 29-81 (329) 74 1jcn_A Inosine monophosphate d 24.0 35 0.0015 14.3 3.1 50 171-220 341-396 (514) 75 1tt5_A APPBP1, amyloid protein 23.6 36 0.0015 14.3 3.8 81 37-119 67-151 (531) 76 3kru_A NADH:flavin oxidoreduct 23.2 36 0.0015 14.2 8.4 100 116-217 207-313 (343) 77 1zco_A 2-dehydro-3-deoxyphosph 23.1 37 0.0015 14.2 3.7 71 136-208 140-224 (262) 78 1ep3_A Dihydroorotate dehydrog 22.5 38 0.0016 14.1 5.0 47 173-220 229-278 (311) 79 1y8q_A Ubiquitin-like 1 activa 21.9 38 0.0016 14.1 2.0 91 27-120 38-153 (346) 80 3igs_A N-acetylmannosamine-6-p 20.8 41 0.0017 13.9 5.2 95 107-217 119-216 (232) 81 1eep_A Inosine 5'-monophosphat 20.7 41 0.0017 13.9 2.8 50 171-220 239-294 (404) 82 3h5n_A MCCB protein; ubiquitin 20.1 42 0.0018 13.8 3.0 71 49-120 165-237 (353) No 1 >3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703} Probab=100.00 E-value=0 Score=587.51 Aligned_cols=220 Identities=30% Similarity=0.403 Sum_probs=210.5 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCC----------- Q ss_conf 989999999999999999819896441899871899999999999729810001210001111000001----------- Q gi|254780801|r 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK----------- 70 (222) Q Consensus 2 ~i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~----------- 70 (222) .|++||+.|+++|++||.++||+|++|+|||||||+|+++|.++|++|+++||||||||+.+|+..|++ T Consensus 24 ~i~~nl~~V~~rI~~A~~~agR~p~~V~LiAVSK~~p~e~I~~a~~~G~r~FGENrvQE~~~K~~~l~~~~~~~~~~~~~ 103 (282) T 3cpg_A 24 EITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIMAAIDAGVRMIGENRPQEVTAKAEGLARRCAERGFSLGV 103 (282) T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCTTSSEEEEECTTCCHHHHHHHHHTTCCCEEESCHHHHHHHHHHHHHHHHHTTEEECC T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 99999999999999999982989366599999899899999999986997036870899999999987641000122222 Q ss_pred --------CCCCCEEEECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHH Q ss_conf --------258730230244320013201110000122222001344333333114303688970046656346570001 Q gi|254780801|r 71 --------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142 (222) Q Consensus 71 --------~~~i~wHfIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el 142 (222) ..+|+|||||||||||+|+++++|+|||||||+++|++|++++.+.+++++||||||+++|++|+||.|+++ T Consensus 104 ~~~~~~~~~~~I~WHfIG~LQsNKvk~iv~~~~~IhSVDs~kla~~l~~~a~~~~~~~~vlIQVNis~E~sK~G~~p~e~ 183 (282) T 3cpg_A 104 AGAAPDAAAEHIPFHLIGQLQSNKIGKVLPVVDTIESVDSIDLAEKISRRAVARGITVGVLLEVNESGEESKSGCDPAHA 183 (282) T ss_dssp C------CCEEECEEECSCCCGGGHHHHTTTCSEEEEECCHHHHHHHHHHHHHHTCCEEEEEEBCCSSCTTSSSBCGGGH T ss_pred CCCCCCCCCCCEEEEEECCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHH T ss_conf 23444456777269994464200077765106466542564305889988762476616999962587756688787779 Q ss_pred HHHHHHHHCCCCCCHHHHEECCCCCCCC---HHHHHHHHHHHHHC---------CCCEECCCCCHHHHHHHHHCCCEEEE Q ss_conf 2223443104311001110115433452---05899999998875---------89472247773489999808988997 Q gi|254780801|r 143 KDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVRI 210 (222) Q Consensus 143 ~~l~~~i~~~~~L~i~GLMti~p~~~d~---~~~F~~l~~l~~~~---------~~~~LSmGMS~D~~~Ai~~Gst~vRi 210 (222) .++++.+..+++|+++|||||||++.|+ +++|..|+++++.+ ++++||||||+||++||++||||||| T Consensus 184 ~~l~~~i~~~~~l~l~GLMti~p~~~d~~~~r~~F~~l~~l~d~l~~~~~~~~~~~~~LSMGMS~Dye~AIe~GST~VRI 263 (282) T 3cpg_A 184 IRIAQKIGTLDGIELQGLMTIGAHVHDETVIRRGFSHLRKTRDLILASGEPGTDRCRELSMGMTGDMELAIAEGSTIVRV 263 (282) T ss_dssp HHHHHHHHTCTTEEEEEEECCCCCSSCHHHHHHHHHHHHHHHHHHHHHCCTTCTTCCEEECCCTTTHHHHHHTTCSEEEE T ss_pred HHHHHHHHHHCCHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHCCCCEEEC T ss_conf 99999986510010221786368888877899999999999999998568877998988170077999999869997980 Q ss_pred CHHHCCCCCCC Q ss_conf 11323899999 Q gi|254780801|r 211 GSGIFGERPCQ 221 (222) Q Consensus 211 Gs~iFG~R~~~ 221 (222) ||+|||+|.|. T Consensus 264 GsaIFG~R~y~ 274 (282) T 3cpg_A 264 GTAIFGERAFI 274 (282) T ss_dssp STTTC------ T ss_pred CCCCCCCCCCC T ss_conf 86523498887 No 2 >1w8g_A YGGS, hypothetical UPF0001 protein YGGS; structural genomics, hypothetical protein, putative enzyme with PLP-binding domain; HET: PLP ICT; 2.0A {Escherichia coli} Probab=100.00 E-value=0 Score=585.55 Aligned_cols=221 Identities=32% Similarity=0.433 Sum_probs=207.6 Q ss_pred CC-HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCC--CCCCEE Q ss_conf 99-899999999999999998198964418998718999999999997298100012100011110000012--587302 Q gi|254780801|r 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE--WDVQLR 77 (222) Q Consensus 1 M~-i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~--~~i~wH 77 (222) |+ |++||..|+++|++||.++||+|++|+|||||||+|+++|.++|++|+++||||||||+.+|+..|+.. ++++|| T Consensus 1 M~~i~~nl~~I~~~I~~a~~~~gR~~~~V~LiaVsK~~~~e~I~~a~~~G~r~fGENrvQE~~~K~~~l~~~~~~~i~WH 80 (234) T 1w8g_A 1 MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWH 80 (234) T ss_dssp --CHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEECTTSCHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHTTCCSCEEE T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE T ss_conf 91799999999999999999809996876999998998999999999869971468741899999999875158880699 Q ss_pred EECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCH Q ss_conf 30244320013201110000122222001344333333114303688970046656346570001222344310431100 Q gi|254780801|r 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNV 157 (222) Q Consensus 78 fIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i 157 (222) |||||||||+|+++++||+||||||+++|++|++++.+.+++++||||||+++|++|+||.|+++.++++.+..+++|++ T Consensus 81 fIG~LQsNKvk~iv~~~~~IhSVDs~kla~~l~~~~~~~~~~~~vliQVNis~E~~K~G~~p~e~~~~~~~~~~~~~l~~ 160 (234) T 1w8g_A 81 FIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRL 160 (234) T ss_dssp ECSCCCGGGHHHHHHHCSEEEEECSHHHHHHHHHHSCTTSCCEEEEEEECCSCTTCCCSBCGGGHHHHHHHHHTCTTEEE T ss_pred EECCCCHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCE T ss_conf 82574101276613321101031027799999854354268751899981377656678527779999999986799756 Q ss_pred HHHEECCCCCCCCHHHHHHHHHH---HHHC-----CCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC Q ss_conf 11101154334520589999999---8875-----8947224777348999980898899711323899999 Q gi|254780801|r 158 EGLMCIPPAMGNPKPHFYLLSEI---AREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222) Q Consensus 158 ~GLMti~p~~~d~~~~F~~l~~l---~~~~-----~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222) +|||||||.++|+.+.|..++++ .+++ ++++||||||+||++||++|||||||||+|||+|+|. T Consensus 161 ~GLMti~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~LSMGMS~D~~~AI~~GsT~VRiGsaiFG~R~y~ 232 (234) T 1w8g_A 161 RGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232 (234) T ss_dssp EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHSTTCCEEECCCGGGHHHHHHHTCSEEEESHHHHCC---- T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHCCCCEEECCCCCCCCCCCC T ss_conf 788643798402789999999999999998732799896677206359999986999698187424699999 No 3 >1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, MAD, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A* Probab=100.00 E-value=0 Score=538.25 Aligned_cols=218 Identities=29% Similarity=0.376 Sum_probs=198.6 Q ss_pred CHHHHHHHHHHHHHHHHHH--CCCCHHHCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEE Q ss_conf 9899999999999999998--19896441899871899999999999729810001210001111000001258730230 Q gi|254780801|r 2 SLGNKLQVFKQKIENSAIL--AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFI 79 (222) Q Consensus 2 ~i~~nl~~i~~~I~~a~~~--~gR~~~~v~LiaVtK~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfI 79 (222) +|.+||+.|+++|+.+|++ +||+|++|+|||||||+|+++|..+|++|+++|||||+||+.+|+..|+. +++|||| T Consensus 13 ~l~~~~~~i~~~I~~a~~~~~~~r~~~~V~LiaVSK~~~~~~I~~~~~~G~~~fGENrvQE~~~K~~~l~~--~i~WHfI 90 (256) T 1ct5_A 13 QLIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPD--DIKWHFI 90 (256) T ss_dssp HHHHHHHHHHHHHHHHHHTC-------CCEEEEECTTSCHHHHHHHHHHTCCEEEECCHHHHHHHHHHSCT--TCEEEEC T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC--CEEEEEE T ss_conf 99999999999999998873269996866999998998999999999869962468659999998664035--3468996 Q ss_pred CCCCCCHHHHHCCCC--HHCCCCCCCCHHHHHHHHHHHHCC---CEEEEEEEECCCCCCCCCCCCC-HHHHHHHHH--HC Q ss_conf 244320013201110--000122222001344333333114---3036889700466563465700-012223443--10 Q gi|254780801|r 80 GSLQSNKVSEIVSLF--DVIETVSREKTASLLSLEMIKQSR---FLPVYIQVNTGYEIQKSGIMPN-QTKDFVILC--RQ 151 (222) Q Consensus 80 G~LQsNKvk~i~~~~--~~Ihsvds~~~a~~L~~~~~~~~~---~~~vliQVN~~~e~~K~G~~p~-el~~l~~~i--~~ 151 (222) |||||||+|++++++ ++||||||++++++|++.+.+.++ +++||||||+++|++|+||.|+ ++.++++.+ .. T Consensus 91 G~LQsNKvk~i~~~~~~~~I~svds~~la~~l~~~~~~~~~~~~~~~vlIQVNi~~e~sK~G~~~~~~l~~~~~~~~~~~ 170 (256) T 1ct5_A 91 GGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEE 170 (256) T ss_dssp SCCCGGGHHHHHHCTTEEEEEEECSHHHHHHHHHHHHHHCTTSCCEEEEEEBCCSSSCCSSSBCCHHHHHHHHHHHHSTT T ss_pred CCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 65321169999974367702325478889999998887521457614888640255557888896789999999999986 Q ss_pred CCCCCHHHHEECCCCCCC-----CHHHHHHHHHHHHHCC-----CCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC Q ss_conf 431100111011543345-----2058999999988758-----947224777348999980898899711323899999 Q gi|254780801|r 152 KYQLNVEGLMCIPPAMGN-----PKPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222) Q Consensus 152 ~~~L~i~GLMti~p~~~d-----~~~~F~~l~~l~~~~~-----~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222) +++|+++|||||||.+.+ ++.+|..++++++++. ..+||||||+||++||++|||||||||+|||+|||+ T Consensus 171 ~~~l~l~GLM~igp~~~~~~~~~~~~~F~~l~~l~~~l~~~~~~~~~LSMGMS~Dye~AI~~GsT~VRIGsaiFG~Rp~~ 250 (256) T 1ct5_A 171 CKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTSLKLSMGMSADFREAIRQGTAEVRIGTDIFGARPPK 250 (256) T ss_dssp CCSEEEEEEECCCCCC---------HHHHHHHHHHHHHHHHHCCCCEEECCCTTTHHHHHHTTCSEEEESHHHHC----- T ss_pred CCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCCC T ss_conf 21132048634467788821257899999999999997171699798717378799999987999698084332799997 No 4 >3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infectious disease, iodide SOAK, LLP, CAT-scratch disease; HET: LLP; 2.04A {Bartonella henselae} Probab=99.58 E-value=8.4e-15 Score=119.45 Aligned_cols=206 Identities=15% Similarity=0.128 Sum_probs=141.7 Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCC----CCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECC Q ss_conf 999999999999981989644189987189----9999999-99972981000121000111100000125873023024 Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81 (222) Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~----~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~ 81 (222) ++.++.+++...+..+ ..+++||.|. +....|. .+.++|++.||-.+++|+.+=.....+ . ..-+++. T Consensus 27 l~ai~~N~~~i~~~~~----~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~i~Ea~~LR~~g~~--~-~il~l~~ 99 (376) T 3kw3_A 27 VRAIVANYRTLAQHVA----PTECSAVVKANAYGLGAHKIAPALYQAGCRTFFVAQIEEALQLKAVLPE--N-VMIALLN 99 (376) T ss_dssp HHHHHHHHHHHHHHHT----TSEECEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHHSCS--S-CEEEETT T ss_pred HHHHHHHHHHHHHHCC----CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCC--C-CHHHHHC T ss_conf 9999999999997579----9829999977414165999999999869699999388999999972885--4-2556306 Q ss_pred CCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHE Q ss_conf 43200132011100001222220013443333331143036889700466563465700012223443104311001110 Q gi|254780801|r 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161 (222) Q Consensus 82 LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLM 161 (222) .........+...+.+.++++...++.++..+.+.+++.+|+|+|+|| .+|.||.++|+.++++.+..++++++.|+| T Consensus 100 ~~~~~~~~~~~~~~~~~~v~s~~~l~~l~~~a~~~~~~~~vhlkvDTG--M~RlG~~~~e~~~~i~~i~~~~~l~i~Gi~ 177 (376) T 3kw3_A 100 GFPHKAEEFVAQSGIIPLLNSWSTIEDWQTLCQKKNKKFPAIIQVDTN--MSRLGLDKKELQKLIKNPTIFEKAEIKYIL 177 (376) T ss_dssp CCCTTCHHHHHHTTCEEEECSHHHHHHHHHHHHHHTCCCEEEEEBCSS--CCSSSBCHHHHHHHHHCCTHHHHSEEEEEE T ss_pred CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECC--CCCCCCCHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 797789999874123440065999999998898638871499998489--984788868999998876640474377898 Q ss_pred ECCCCCCCCH-----HHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC Q ss_conf 1154334520-----58999999988758947224777348999980898899711323899999 Q gi|254780801|r 162 CIPPAMGNPK-----PHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222) Q Consensus 162 ti~p~~~d~~-----~~F~~l~~l~~~~~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222) |==+..+++. ..|.........+....+|+.-|.-.-.--+.--+|||.|.+|||..|.. T Consensus 178 THfa~ad~~~~~~~~~q~~~~~~~~~~~~~~~~h~~NSag~~~~~~~~~d~vR~Gi~lYG~~p~~ 242 (376) T 3kw3_A 178 SHLANGEDASHSSNNKQLAAFKRVLAQLPTCKVSFANSGGIFLGSDFYFDLVRPGIALYGVDPHG 242 (376) T ss_dssp CCCSSTTCTTCHHHHHHHHHHHHHHTTSCCCCEECCCHHHHTTCGGGTTTEECCSGGGGTCCTTC T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHCCCCEECCEEEECCCCCC T ss_conf 77613556782889999999999975177546555476998639232146420340252577643 No 5 >1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, internal aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis} Probab=99.57 E-value=5e-14 Score=114.24 Aligned_cols=204 Identities=19% Similarity=0.179 Sum_probs=140.1 Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCC----CCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECC Q ss_conf 999999999999981989644189987189----9999999-99972981000121000111100000125873023024 Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81 (222) Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~----~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~ 81 (222) +..++.+++...+.++ ..+++||.|. +....|. .++++|++.||..+++|+.+=..... +...-..|+ T Consensus 18 l~al~~N~~~ir~~~~----~~~i~aVVKanAYGhG~~~ia~~l~~~Gi~~faVa~i~EA~~LR~~g~---~~~Il~l~~ 90 (384) T 1xfc_A 18 LGAIEHNVRVLREHAG----HAQLMAVVKADGYGHGATRVAQTALGAGAAELGVATVDEALALRADGI---TAPVLAWLH 90 (384) T ss_dssp HHHHHHHHHHHHHHHT----TSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESCHHHHHHHHHTTC---CSCEEECCC T ss_pred HHHHHHHHHHHHHHCC----CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCC---CCCEEEECC T ss_conf 9999999999997689----983999992524537899999999977979899938999999998289---886699707 Q ss_pred CCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH---CCCCCCHH Q ss_conf 432001320111000012222200134433333311430368897004665634657000122234431---04311001 Q gi|254780801|r 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR---QKYQLNVE 158 (222) Q Consensus 82 LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~---~~~~L~i~ 158 (222) ....-...++. .+++.+|++...++.++..+.+.+++.+|+|+||+| .+|.||.|+++.+++..+. ..++|++. T Consensus 91 ~~~~~~~~~~~-~~~~~~i~s~~~l~~l~~~~~~~~~~~~vhLkvDTG--M~RlG~~~~~~~~~~~~~~~~~~~~~l~~~ 167 (384) T 1xfc_A 91 PPGIDFGPALL-ADVQVAVSSLRQLDELLHAVRRTGRTATVTVKVDTG--LNRNGVGPAQFPAMLTALRQAMAEDAVRLR 167 (384) T ss_dssp CTTCCCHHHHH-TTCEEEECSHHHHHHHHHHHHHHCCCEEEEEEBCSS--CCSSSBCTTTHHHHHHHHHHHHHTTSEEEE T ss_pred CCHHHHHHHHH-CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECC--CCCCCCCCHHHHHHHHHHHHHHHCCCEEEE T ss_conf 98788999975-585466366999999999999739983599998079--887887805679999999866534726674 Q ss_pred HHEECCCCCCCC-----HH---HHHHHHHHHHHC--CCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCC Q ss_conf 110115433452-----05---899999998875--894722477734899998089889971132389999 Q gi|254780801|r 159 GLMCIPPAMGNP-----KP---HFYLLSEIAREC--KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220 (222) Q Consensus 159 GLMti~p~~~d~-----~~---~F~~l~~l~~~~--~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222) |+||=-+..+++ .. .|..+.+...+. .....++.=|.-...--+..-+|||.|.++||-.|. T Consensus 168 Gi~TH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~~~~~~~~nS~~~~~~~~~~~d~vR~Gi~lYG~~p~ 239 (384) T 1xfc_A 168 GLMSHMVYADKPDDSINDVQAQRFTAFLAQAREQGVRFEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSPV 239 (384) T ss_dssp EEECCC-----CCSHHHHHHHHHHHHHHHHHHHTTCCCSEEECBCHHHHHHCGGGCCSEECCSGGGGTCCSS T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHCCCEECCCCEECCCCC T ss_conf 578767723788742679999999999987775089820445541366650942203653158201356677 No 6 >3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosphate; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A* Probab=99.46 E-value=2.8e-13 Score=109.22 Aligned_cols=206 Identities=15% Similarity=0.148 Sum_probs=138.5 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEEECCC----CCHHHHHH-HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEC Q ss_conf 9999999999999981989644189987189----99999999-997298100012100011110000012587302302 Q gi|254780801|r 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIRV-ALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80 (222) Q Consensus 6 nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~----~~~e~I~~-~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG 80 (222) |++.++.+++...++. ++.++++||.|. +....|.. +.++|++.||..+++|+.+=...- .+...-..| T Consensus 14 dl~al~~N~~~i~~~~---~~~~~i~aVVKanAYGhG~~~va~~l~~~Gi~~faVa~i~Ea~~LR~~g---~~~~ilvl~ 87 (371) T 3e5p_A 14 DTQAITENVQKECQRL---PEGTALFAVVKANGYGHGAVESAKAAKKGGATGFCVALLDEAIELREAG---VQDPILILS 87 (371) T ss_dssp CHHHHHHHHHHHHHSS---CSSSEEEEECHHHHHTTCHHHHHHHHHHTTCCCEEESSHHHHHHHHTTT---CCSCEEEEE T ss_pred EHHHHHHHHHHHHHHC---CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCC---CCCCEEEEC T ss_conf 6999999999999747---9989799999453464778999999998796999990999999999729---999478641 Q ss_pred CCCCCHHHHHCCCCHHCCCCCCCCH-HHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC-CHHHHHHHHHHCCCCCCHH Q ss_conf 4432001320111000012222200-1344333333114303688970046656346570-0012223443104311001 Q gi|254780801|r 81 SLQSNKVSEIVSLFDVIETVSREKT-ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKYQLNVE 158 (222) Q Consensus 81 ~LQsNKvk~i~~~~~~Ihsvds~~~-a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p-~el~~l~~~i~~~~~L~i~ 158 (222) ......+..++.+ +++.+|.+... ...++..+.+.+++.+|+|+|++| .+|.||.+ +++.++++.+..++++.+. T Consensus 88 ~~~~~~~~~~~~~-~l~~~i~s~~~~~~~l~~~a~~~~~~~~vhLkiDTG--M~RlG~~~~ee~~~~~~~~~~~~~l~~~ 164 (371) T 3e5p_A 88 VVDLAYVPLLIQY-DLSVTVATQEWLEAALQQLTPESNTPLRVHLKVDTG--MGRIGFLTPEETKQAVRFVQSHKEFLWE 164 (371) T ss_dssp ECCGGGHHHHHHH-TCEEEECCHHHHHHHHHHHCSCCSCCBCEEEEBCSS--SCSSSBCSSHHHHHHHHHHHHSTTBCCC T ss_pred CCCCHHHHHHHHC-CCEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECC--CCCCCCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 5682057899737-966996409999999999987427764799999389--9867987478999999998741263330 Q ss_pred HHEECCCCCCCCH-----HHHHHHHHHHHHCC--CCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCC Q ss_conf 1101154334520-----58999999988758--94722477734899998089889971132389999 Q gi|254780801|r 159 GLMCIPPAMGNPK-----PHFYLLSEIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220 (222) Q Consensus 159 GLMti~p~~~d~~-----~~F~~l~~l~~~~~--~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222) |+||=-+..+++. ..|..+.++.+.+. ....+++=|.-.-.--+..-+|||+|.+|||-.|. T Consensus 165 gi~tH~~~a~~~~~~~~~~q~~~f~~~~~~~~~~~~~~h~~nS~~~l~~~~~~~d~vR~Gi~lYG~~p~ 233 (371) T 3e5p_A 165 GIFTHFSTADEIDTSYFEKQAGRFKAVLAVLEELPRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPS 233 (371) T ss_dssp EEECCCSCTTSSCCHHHHHHHHHHHTTSSSCSCCCSEEECBCHHHHHHCTTSSCSEEEECGGGGTCCTT T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCCCCCCCCCHHHCCCCCC T ss_conf 202100134566637899999999999986313663366417667645853357745159743188987 No 7 >2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A* Probab=99.46 E-value=6.6e-13 Score=106.67 Aligned_cols=205 Identities=17% Similarity=0.146 Sum_probs=135.7 Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCC----CCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECC Q ss_conf 999999999999981989644189987189----9999999-99972981000121000111100000125873023024 Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81 (222) Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~----~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~ 81 (222) ++.++.+++...++. ++.++++||.|. +....|. .+.++|++.||-.+++|+.+=...- .+...-..|+ T Consensus 18 l~al~~N~~~i~~~~---~~~~~i~aVVKanAYGhG~~~va~~l~~~Gi~~faVa~~~EA~~LR~~g---i~~~Ilvl~~ 91 (391) T 2vd8_A 18 LDAIYNNVTHIXEFI---PSDVEIFAVVKGNAYGHDYVPVAXIALEAGATRLAVAFLDEALVLRRAG---ITAPILVLGP 91 (391) T ss_dssp HHHHHHHHHHHHHHS---CTTCEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTT---CCSCEEECSC T ss_pred HHHHHHHHHHHHHHC---CCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCC---CCCCEEEEEC T ss_conf 999999999999747---9998799999150264788999999998698999991699999999719---9997799748 Q ss_pred CCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCC-HHHHHHHHHHCCCCCCHHHH Q ss_conf 43200132011100001222220013443333331143036889700466563465700-01222344310431100111 Q gi|254780801|r 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVEGL 160 (222) Q Consensus 82 LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~-el~~l~~~i~~~~~L~i~GL 160 (222) ....-+..++. .+.+-++.+...+..+...+ +.++++++.|.|+|+ .+|.||.|+ ++.+++..+..+++|++.|+ T Consensus 92 ~~~~~~~~~~~-~~~~~~i~s~~~l~~~~~~~-~~~~~~~vhlkiDTG--M~RlG~~~~~e~~~~~~~i~~~~~l~i~Gi 167 (391) T 2vd8_A 92 SPPRDINVAAE-NDVALTVFQXEWVDEAIXLW-DGSSTMXYHINFDSG--MGRIGIRERXELXGFLXSLEGAPFLELEGV 167 (391) T ss_dssp CCGGGHHHHHH-TTEEEECCCHHHHHHHHHHC-CSSCCEEEEEEBCSS--CCSSSBCCHHHHHHHHHHHTTCTTEEEEEE T ss_pred CCHHHHHHHHH-CCCCEEECHHHHHHHHHHHH-HCCCCEEEEEEECCC--CCCCCCCCHHHHHHHHHHHHHCCCCCEEEE T ss_conf 88256556542-05320340599999999986-046864899996379--886788741468999999972899650367 Q ss_pred EECCCCCCCC-----HHHHHHHHHHHH---HCC--CCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC Q ss_conf 0115433452-----058999999988---758--947224777348999980898899711323899999 Q gi|254780801|r 161 MCIPPAMGNP-----KPHFYLLSEIAR---ECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222) Q Consensus 161 Mti~p~~~d~-----~~~F~~l~~l~~---~~~--~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222) ||==+..+++ ..++..+.++.. +.. ....++.-|.-.-.--+..-+|||+|.++||-.|.. T Consensus 168 ~THfa~ad~~~~~~~~~Q~~~F~~~~~~~~~~~~~~~~~h~anS~a~l~~~~~~~d~VR~Gi~lYG~~p~~ 238 (391) T 2vd8_A 168 YTHFATADEVETSYFDXQYNTFLEQLSWLXEFGVDPXFVHTANSAATLRFQGITFNAVRIGIAMYGLSPSV 238 (391) T ss_dssp ECCCSSTTSSSCHHHHHHHHHHHHHHHHHHHTTCCCCSEECCCHHHHTTCTTCCTTEEEESTTTTTCCSCT T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCCCCCCEECCCCEECCCCCC T ss_conf 61227677654056789999999999999862898320552276766467523577340682014777763 No 8 >1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A* Probab=99.45 E-value=1.1e-12 Score=105.29 Aligned_cols=205 Identities=15% Similarity=0.126 Sum_probs=140.1 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEEECCC----CCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEC Q ss_conf 9999999999999981989644189987189----9999999-9997298100012100011110000012587302302 Q gi|254780801|r 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80 (222) Q Consensus 6 nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~----~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG 80 (222) |++.++.+++...+.+ + ..+++||.|. +....|. .+.++|++.||-.+++|+.+=..... +...-..| T Consensus 13 dl~ai~~N~~~ir~~~---~-~~~i~aVVKAnAYGhG~~~va~~l~~~Gi~~faVa~i~EA~~LR~~g~---~~~ilil~ 85 (386) T 1vfs_A 13 DLDAVRANVRALRARA---P-RSALMAVVKSNAYGHGAVPCARAAQEAGAAWLGTATPEEALELRAAGI---QGRIMCWL 85 (386) T ss_dssp EHHHHHHHHHHHHTTS---T-TSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTTC---CSEEEECC T ss_pred EHHHHHHHHHHHHHHC---C-CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCC---CCCEEEEE T ss_conf 6999999999999768---9-983999992504638799999999986989999813999999997189---99858994 Q ss_pred CCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHH---HCCCCCCH Q ss_conf 443200132011100001222220013443333331143036889700466563465700012223443---10431100 Q gi|254780801|r 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC---RQKYQLNV 157 (222) Q Consensus 81 ~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i---~~~~~L~i 157 (222) .....-++.++. .+.+-++.+...++.++..+.+.+++.+|.|+|+|+ .+|.||.|+|+.++++.+ ...++|++ T Consensus 86 ~~~~~~~~~~~~-~~~~~~i~s~~~l~~~~~~a~~~~~~~~vhlkiDTG--M~RlG~~~~e~~~~~~~~~~~~~~~~l~~ 162 (386) T 1vfs_A 86 WTPGGPWREAIE-TDIDVSVSGMWALDEVRAAARAAGRTARIQLKADTG--LGRNGCQPADWAELVGAAVAAQAEGTVQV 162 (386) T ss_dssp CCTTCCHHHHHH-TTCEEEECSHHHHHHHHHHHHHHTSCEEEEEEBCSS--CCSSSBCHHHHHHHHHHHHHHHHTTSEEE T ss_pred CCCCHHHHHHHH-HCCCEEECCHHHHHHHHHHHHHCCCCCEEEEEECCC--CCCCCCCHHHHHHHHHHHHHHHCCCCEEE T ss_conf 487058999986-073135475999999999998649982499995167--78678583788999999998621796427 Q ss_pred HHHEEC-CCCCC-C-C--HHHHHHHHHH---HHH--CCCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCC Q ss_conf 111011-54334-5-2--0589999999---887--5894722477734899998089889971132389999 Q gi|254780801|r 158 EGLMCI-PPAMG-N-P--KPHFYLLSEI---ARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220 (222) Q Consensus 158 ~GLMti-~p~~~-d-~--~~~F~~l~~l---~~~--~~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222) .|+||= +..++ + + +.++..+.++ ..+ +.....+++-|.---.--+.--+|||+|.++||-.|. T Consensus 163 ~Gi~TH~a~ad~~~~~~~~~Q~~~F~~~~~~l~~~~~~~~~~h~anS~~~l~~~~~~~d~vR~Gi~lYG~~p~ 235 (386) T 1vfs_A 163 TGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGVDPEVRHIANSPATLTLPETHFDLVRTGLAVYGVSPS 235 (386) T ss_dssp EEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECHHHHHHCGGGCSSEEEECGGGGTCCSC T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHCCCCCCCCCCCCCCEEEECCCCC T ss_conf 9998644555775306789999999999999997178861565158632017840148742553154667767 No 9 >1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* Probab=99.42 E-value=3e-12 Score=102.29 Aligned_cols=205 Identities=17% Similarity=0.143 Sum_probs=138.2 Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCC----CCHHHHHH-HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECC Q ss_conf 999999999999981989644189987189----99999999-9972981000121000111100000125873023024 Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIRV-ALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81 (222) Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~----~~~e~I~~-~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~ 81 (222) +..++.+++...+.. ++.++++||.|. +....|.. +.++|++.||--+++|+.+=...- .+...-..|+ T Consensus 14 l~al~~N~~~i~~~~---~~~~~i~aVVKanAYGhG~~~ia~~l~~~Gv~~faVa~~~EA~~LR~~g---i~~~ILvl~~ 87 (388) T 1bd0_A 14 LDAIYDNVENLRRLL---PDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKG---IEAPILVLGA 87 (388) T ss_dssp HHHHHHHHHHHHHHS---CTTCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEESSHHHHHHHHHTT---CCSCEEECSC T ss_pred HHHHHHHHHHHHHHC---CCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCC---CCCCEEEECC T ss_conf 999999999999748---9989799999150264888999999998698999986799999999708---9985899617 Q ss_pred CCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCH-HHHHHHHHHCCCCCCHHHH Q ss_conf 432001320111000012222200134433333311430368897004665634657000-1222344310431100111 Q gi|254780801|r 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGL 160 (222) Q Consensus 82 LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~e-l~~l~~~i~~~~~L~i~GL 160 (222) ....-...++. .+...+|.+...++.+... .+.+.+++|+|+||++ .+|.||.|+| +..++..+..+++|++.|+ T Consensus 88 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~-~~~~~~~~vhLkiDTG--M~RlG~~~~e~~~~~~~~i~~~~~l~~~Gi 163 (388) T 1bd0_A 88 SRPADAALAAQ-QRIALTVFRSDWLEEASAL-YSGPFPIHFHLKMDTG--MGRLGVKDEEETKRIVALIERHPHFVLEGL 163 (388) T ss_dssp CCGGGHHHHHH-TTEEEEECCHHHHHHHHHH-CCCSSCEEEEEEBCSS--SCSSSBCSHHHHHHHHHHHHHSTTEEEEEE T ss_pred CCHHHHHHHHH-CCCCCCCCCHHHHHHHHHH-HHCCCCEEEEEEEECC--CCCCCCCCHHHHHHHHHHHHHCCCCEEEEE T ss_conf 88689999873-2666420629999988887-6158863899998168--886787827899999999985899616789 Q ss_pred EECCCCCCCC-----HHHHHHHHHHHHHCC--CCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC Q ss_conf 0115433452-----058999999988758--947224777348999980898899711323899999 Q gi|254780801|r 161 MCIPPAMGNP-----KPHFYLLSEIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222) Q Consensus 161 Mti~p~~~d~-----~~~F~~l~~l~~~~~--~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222) ||-=+..+++ ...|..+..+.+... ....|++=|.-.-.--+..-++||+|.++||-.|.. T Consensus 164 ~tH~a~ad~~~~~~~~~q~~~~~~~~~~~~~~~~~~h~anS~~~l~~~~~~~d~vR~Gi~lyG~~p~~ 231 (388) T 1bd0_A 164 YTHFATADEVNTDYFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSP 231 (388) T ss_dssp ECCCSSTTSSCCHHHHHHHHHHHHHHTTCSSCCSEEECCCHHHHHHCTTSCTTEEEECGGGGTCCSCG T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCEECCEEEEECCCCC T ss_conf 70246732235288999999999999975324540666256777539502376041336888437776 No 10 >3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis} Probab=99.41 E-value=2.7e-13 Score=109.28 Aligned_cols=204 Identities=14% Similarity=0.082 Sum_probs=140.5 Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCC Q ss_conf 9999999999999819896441899871899999999-999729810001210001111000001258730230244320 Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85 (222) Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsN 85 (222) ++.++.+++.-...++ +..+.|.+|.|++..-+|. .+.++|.+.|+-..+.|++.-...--+ + ..+..++.-. T Consensus 21 l~~l~~N~~~~~~~~~--~~~~~l~~~vK~h~~~~ia~~l~~~G~~~~~va~~~Ea~~l~~~g~~--~--~l~~~~~~~~ 94 (376) T 3llx_A 21 EAKLKSNINYLKQRVE--SLGSHLRPHLKTLRTLEAAGYLLDSKSAPATVSTLAEAEAYAKAGYT--D--LLYAVGIAPA 94 (376) T ss_dssp HHHHHHHHHHHHHHHH--HTTCCBCCBCTTTCBHHHHHHHCSSTTSCEEESSHHHHHHHHHTTCC--E--EEEEEECCGG T ss_pred HHHHHHHHHHHHHHHH--HCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCC--C--EEEECCCCCH T ss_conf 9999999999998653--55983999964137999999999789998998059999999967998--6--6981467805 Q ss_pred HHHHHCCC----CHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHE Q ss_conf 01320111----00001222220013443333331143036889700466563465700012223443104311001110 Q gi|254780801|r 86 KVSEIVSL----FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161 (222) Q Consensus 86 Kvk~i~~~----~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLM 161 (222) +...+... ....-.+|+...++.+++.+.+.+++.+|+|+|+++ ..|.|+.|++ +++..+...+++++.|+| T Consensus 95 ~~~~~~~l~~~~~~~~~~vds~~~~~~l~~~a~~~~~~~~v~l~iD~G--~~R~G~~~~~--~~~~~~~~~~~l~~~Gi~ 170 (376) T 3llx_A 95 KLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQDFSVFIEIDSD--DHRGGIKPSD--SKLLTIAKTLGEHFTGLM 170 (376) T ss_dssp GHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCCCEEEEEBCSS--SSSSCBCTTC--THHHHHHHHHGGGEEEEE T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEEECC--CCCCCCCHHH--HHHHHHCCCCCCCCCCCC T ss_conf 679999987348748999777999999999998749825899875058--8757789059--999973012110003310 Q ss_pred ECCCCCC---C--C-----HHH---HHHHHHHHHH--CCCCEECCCCCHHHHHHHHH-CCCEEEECHHHCCCCCC Q ss_conf 1154334---5--2-----058---9999999887--58947224777348999980-89889971132389999 Q gi|254780801|r 162 CIPPAMG---N--P-----KPH---FYLLSEIARE--CKLTKLSMGMTRDFELAIAS-GATSVRIGSGIFGERPC 220 (222) Q Consensus 162 ti~p~~~---d--~-----~~~---F~~l~~l~~~--~~~~~LSmGMS~D~~~Ai~~-Gst~vRiGs~iFG~R~~ 220 (222) +.+.... + . +.. |....+.... +....+|+|.|..|....+. |-|.+|+|+.+|+..+| T Consensus 171 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~g~t~~~~~~~~~~~i~~lr~G~~~~~d~~~ 245 (376) T 3llx_A 171 THAGGSYACNTEQGLKNFAKQECDAVRIARNNLETAGIHCAITSVGSTPTAHFGEDFSDISEVRAGVYTTFDLVM 245 (376) T ss_dssp CCCGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEECCHHHHHHCSCCTTCSEECCCGGGTCCHHH T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHCCCCCCEEECCCCCCCCCHHH T ss_conf 233312456987899999999999999987557644998518981797046564037885375654402368666 No 11 >1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A* Probab=99.39 E-value=3.6e-12 Score=101.76 Aligned_cols=187 Identities=16% Similarity=0.128 Sum_probs=131.3 Q ss_pred HCEEEEECCC----CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCHHCCCCCC Q ss_conf 4189987189----999999999972981000121000111100000125873023024432001320111000012222 Q gi|254780801|r 27 SVSLVAVSKM----VDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR 102 (222) Q Consensus 27 ~v~LiaVtK~----~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~~~~Ihsvds 102 (222) ..+++||.|- +....|..+++.|++.||--.++|+.+=...-.+ ....-+-|.....-...+.. .+.+-++++ T Consensus 25 ~~ki~aVVKanAYGhG~~~ia~~L~~g~~~faVa~~~Ea~~LR~~g~~--~~il~l~~~~~~~~~~~~~~-~~i~~~i~s 101 (357) T 1rcq_A 25 GARALAVIKADAYGHGAVRCAEALAAEADGFAVACIEEGLELREAGIR--QPILLLEGFFEASELELIVA-HDFWCVVHC 101 (357) T ss_dssp CSEEEEECHHHHHTTCHHHHHHHHTTTCSEEEESSHHHHHHHHHTTCC--SCEEETTCCSSGGGHHHHHH-TTEEEEECS T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHCCC--CCEECCCCCCCHHHHHHHHH-HCCCCCCCH T ss_conf 994999996653538799999999956997999899999999970996--42011001355778898886-314656587 Q ss_pred CCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCC-----HHHHHHH Q ss_conf 20013443333331143036889700466563465700012223443104311001110115433452-----0589999 Q gi|254780801|r 103 EKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-----KPHFYLL 177 (222) Q Consensus 103 ~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~-----~~~F~~l 177 (222) ...++.+++. ..+++++|.|.|+|| .+|.||.++|+.+++..+...+++.+.|+||--+..+++ ...|..+ T Consensus 102 ~~~~~~l~~~--~~~~~~~vhLkvDTG--M~RlG~~~~e~~~~~~~~~~~~~~~~~gi~tH~a~ad~~~~~~~~~q~~~f 177 (357) T 1rcq_A 102 AWQLEAIERA--SLARPLNVWLKMDSG--MHRVGFFPEDFRAAHERLRASGKVAKIVMMSHFSRADELDCPRTEEQLAAF 177 (357) T ss_dssp HHHHHHHHHC--CCSSCEEEEEEBCSS--SCSSSBCHHHHHHHHHHHHHTTCEEEEEEECCCSSTTCTTCTHHHHHHHHH T ss_pred HHHHHHHHHH--CCCCCEEEEEEECCC--CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHH T ss_conf 9999999974--636643699997267--643356837888889998641454403456530335562036799999999 Q ss_pred HHHHHHCCCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC Q ss_conf 99988758947224777348999980898899711323899999 Q gi|254780801|r 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222) Q Consensus 178 ~~l~~~~~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222) ..+.+.. ....|+.-|.-.-..-+..-+|||+|.++||-.|.. T Consensus 178 ~~~~~~~-~~~~h~aNS~~~l~~~~~~~d~vR~Gi~lYG~~p~~ 220 (357) T 1rcq_A 178 SAASQGL-EGEISLRNSPAVLGWPKVPSDWVRPGILLYGATPFE 220 (357) T ss_dssp HHHHTTC-CSCEECCCHHHHHHCTTSCCSEECCCGGGGTCCSSS T ss_pred HHHHHHC-CCCCCCCCCHHHHCCCCCCCCEECCCCCCCCCCCCC T ss_conf 9987511-332114683988548402486246672014567874 No 12 >2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum} Probab=99.36 E-value=8.3e-12 Score=99.31 Aligned_cols=203 Identities=16% Similarity=0.152 Sum_probs=127.6 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEEECC----CCCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEC Q ss_conf 999999999999998198964418998718----99999999-9997298100012100011110000012587302302 Q gi|254780801|r 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80 (222) Q Consensus 6 nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK----~~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG 80 (222) ||..++.+++...+.+ ...+++||.| ++....|. .+.++|++.||--+++|+.+=..... +...-..| T Consensus 9 dL~al~~N~~~i~~~~----~~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~~~Ea~~LR~~g~---~~~Ilil~ 81 (361) T 2dy3_A 9 DLDAIAHNTRVLKQMA----GPAKLMAVVKANAYNHGVEKVAPVIAAHGADAFGVATLAEAMQLRDIGI---SQEVLCWI 81 (361) T ss_dssp CHHHHHHHHHHHHHHH----TTSEEEEECHHHHHHTCHHHHHHHHHHTTCCEEEESSHHHHHHHHHTTC---CSEEEECC T ss_pred EHHHHHHHHHHHHHHC----CCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCCC---CCCEEEEC T ss_conf 5999999999998567----9984999994554637899999999986949999832999999997389---99768755 Q ss_pred CCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHH Q ss_conf 44320013201110000122222001344333333114303688970046656346570001222344310431100111 Q gi|254780801|r 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160 (222) Q Consensus 81 ~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GL 160 (222) .......+.++.+ +.+-++.+...+..+. ...++..+|.|+|+|+ .+|.||.++|+.+++..+..++++++.|+ T Consensus 82 ~~~~~~~~~~~~~-~~~~~v~s~~~~~~~~---~~~~~~~~vhLkvDTG--M~RlG~~~~e~~~~~~~~~~~~~l~~~gi 155 (361) T 2dy3_A 82 WTPEQDFRAAIDR-NIDLAVISPAHAKALI---ETDAEHIRVSIKIDSG--LHRSGVDEQEWEGVFSALAAAPHIEVTGM 155 (361) T ss_dssp CCTTSCHHHHHTT-TCEEEECSHHHHHHHH---TSCCSCEEEEEEBCCS--SCSSSBCHHHHHHHHHHHHTCTTEEEEEE T ss_pred CCCHHHHHHHHHH-CCCEEECCHHHHHHHH---HHHCCCCEEEEEECCC--CCCCCCCHHHHHHHHHHHHHCCCCCEECC T ss_conf 8874889999972-7741550289989999---9727886499998789--97679897999998999874356113201 Q ss_pred EECCCCCCCC-----HH---HHHHHHHHHHHCC--CCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC Q ss_conf 0115433452-----05---8999999988758--947224777348999980898899711323899999 Q gi|254780801|r 161 MCIPPAMGNP-----KP---HFYLLSEIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222) Q Consensus 161 Mti~p~~~d~-----~~---~F~~l~~l~~~~~--~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222) ||=-+..+++ .. .|..+-+...+.. ....++.-|.-.-.--+.--+|||+|.++||-.|.. T Consensus 156 ~tH~a~ad~~d~~~~~~Q~~~F~~~~~~l~~~~~~~~~~h~anS~~~~~~~~~~~d~vR~Gi~lYG~~~~~ 226 (361) T 2dy3_A 156 FTHLACADEPENPETDRQIIAFRRALALARKHGLECPVNHVCNSPAFLTRSDLHMEMVRPGLAFYGLEPVA 226 (361) T ss_dssp ECCCC--------CHHHHHHHHHHHHHHHHHTTCCCCSCBCCCHHHHHHCGGGCTTEECCCGGGGTCCSST T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHCCCHHCCCEEECCEEEECCCCCC T ss_conf 23540468765526899999999999998752786405565153666539410166230140476667775 No 13 >3co8_A Alanine racemase; protein structure initiative II, PSI-II, NYSGXRC, PLP, TIM barrel, structural genomics; HET: PLP; 1.70A {Oenococcus oeni psu-1} Probab=99.32 E-value=3.5e-11 Score=95.06 Aligned_cols=203 Identities=14% Similarity=0.161 Sum_probs=130.6 Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCC----CCHHHHHH-HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECC Q ss_conf 999999999999981989644189987189----99999999-9972981000121000111100000125873023024 Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIRV-ALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81 (222) Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~----~~~e~I~~-~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~ 81 (222) ++.++.+++...+.++ ..+++||-|. +....|.. +.++|++.||--+++|+.+=.... .+...-..|+ T Consensus 16 l~al~~N~~~ir~~~~----~~~i~aVVKanAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~LR~~g---i~~~Ilvl~~ 88 (380) T 3co8_A 16 KSSLAYNVQYTKQVSG----AKTLWLAVKSNAYGHGLLQVSKIARECGVDGLAVSVLDEGIAIRQAG---IDDFILILGP 88 (380) T ss_dssp HHHHHHHHHHHHHHHC----CSEEEEECHHHHHTTCHHHHHHHHGGGTCCEEEESSHHHHHHHHHTT---CCCCEEECSC T ss_pred HHHHHHHHHHHHHHCC----CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHCC---CCCCEEEEEC T ss_conf 9999999999985579----98499999743464789999999998697999991999999999739---9983899725 Q ss_pred CCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCC-HHHHHHHHHHC-CCCCCHHH Q ss_conf 43200132011100001222220013443333331143036889700466563465700-01222344310-43110011 Q gi|254780801|r 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQ-KYQLNVEG 159 (222) Q Consensus 82 LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~-el~~l~~~i~~-~~~L~i~G 159 (222) +...-...++. .+++-+|.+...++.+++.+. +++++|.|+|++| .+|.||.|+ ++.++++.+.+ .+++++.| T Consensus 89 ~~~~~~~~~~~-~~l~~~i~s~~~l~~l~~~~~--~~~~~VhLkiDTG--M~RlG~~~~~~~~~~~~~l~~~~~~l~~~G 163 (380) T 3co8_A 89 IDVKYAPIASK-YHFLTTVSSLDWLKSADKILG--KEKLSVNLAVDTG--MNRIGVRSKKDLKDEIEFLQEHSDHFSYDG 163 (380) T ss_dssp CCGGGHHHHHH-TTCEEEECCHHHHHHHHHHCT--TCCEEEEEEBCSS--SCSSSBCSHHHHHHHHHHHHHCTTTEEEEE T ss_pred CCHHHHHHHHH-HCCCCCCCCHHHHHHHHHHHC--CCCCEEEEEEECC--CCCCCCCCHHHHHHHHHHHHHHCCCCCCCE T ss_conf 42123368887-253100024999999999734--6884389998268--986777734678999999764113544002 Q ss_pred HEECCCCCCCC-----HHHHHHHHHHHHHCCCCEE-CCCCCHHHHHHHH---HCCCEEEECHHHCCCCCCC Q ss_conf 10115433452-----0589999999887589472-2477734899998---0898899711323899999 Q gi|254780801|r 160 LMCIPPAMGNP-----KPHFYLLSEIARECKLTKL-SMGMTRDFELAIA---SGATSVRIGSGIFGERPCQ 221 (222) Q Consensus 160 LMti~p~~~d~-----~~~F~~l~~l~~~~~~~~L-SmGMS~D~~~Ai~---~Gst~vRiGs~iFG~R~~~ 221 (222) +||--+..+++ ..++..+.++.+.+....+ ++-.|+---.... ..-+|||+|.+|||-.|.+ T Consensus 164 i~SHfa~ad~~~~~~~~~q~~~f~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~d~vR~Gi~lYG~~p~~ 234 (380) T 3co8_A 164 IFTHFASSDNPDDHYFQRQKNRWYELIDGLIMPRYVHVMNSGAAMYHSKELPGCNSIARVGTVVYGVEPSE 234 (380) T ss_dssp EECCCC---------CHHHHHHHHHHHTTSCCCSEEECBCHHHHHHCGGGCTTSCSEEEESTTTTTCCTTT T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCCCHHCCCCCCCCCCCCEEECCCCCC T ss_conf 66202366777647889999999999974357531455331656358111564322346772224567874 No 14 >3oo2_A Alanine racemase 1; infectious diseases, center for structural of infectious diseases (csgid); 2.37A {Staphylococcus aureus subsp} Probab=99.24 E-value=6.4e-11 Score=93.34 Aligned_cols=204 Identities=19% Similarity=0.242 Sum_probs=132.8 Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCC----CCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECC Q ss_conf 999999999999981989644189987189----9999999-99972981000121000111100000125873023024 Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81 (222) Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~----~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~ 81 (222) ++.++.+++...+.++ ..+++||.|- +....|. .++++|++.||--+++|+.+=... ..+...-..|. T Consensus 18 l~al~~N~~~ir~~~~----~~~i~aVVKAnAYGhG~~~va~~l~~~Gv~~faVa~~~EA~~LR~~---gi~~~Ilvl~~ 90 (385) T 3oo2_A 18 LNAVASNFKVFSTLHP----NKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIELRMH---GITAKILVLGV 90 (385) T ss_dssp HHHHHHHHHHHHHHST----TSEEEEECHHHHHTTCHHHHHHHHHHTTCCEEEESSHHHHHHHHTT---TCCSEEEECSC T ss_pred HHHHHHHHHHHHHHCC----CCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHC---CCCCCEEEECC T ss_conf 9999999999995589----9859999966036488999999999869799999089999999966---99985576156 Q ss_pred CCCCHHHHHCCCCHHCCCCCCCCHHHH-HHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCH-HHHHHHHHHCCCCCCHHH Q ss_conf 432001320111000012222200134-433333311430368897004665634657000-122234431043110011 Q gi|254780801|r 82 LQSNKVSEIVSLFDVIETVSREKTASL-LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEG 159 (222) Q Consensus 82 LQsNKvk~i~~~~~~Ihsvds~~~a~~-L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~e-l~~l~~~i~~~~~L~i~G 159 (222) +...-...++.+ +..-++.+...+.. ++..+.+.+++++|.|+|++| .+|.||.|+| +.++++.+..+++|++.| T Consensus 91 ~~~~e~~~~~~~-~l~~~i~~~~~l~~~~~~~~~~~~~~~~vhLkiDTG--M~RlG~~~~e~~~~~~~~~~~~~~l~i~G 167 (385) T 3oo2_A 91 LPAKDIDKAIQH-RVALTVPSKQWLKEAIKNISGEQEKKLWLHIKLDTG--MGRLGIKDTKTYQEVIEIIQQYEQLVFEG 167 (385) T ss_dssp CCGGGHHHHHHT-TEEEEECCHHHHHHHHHTCCSSCCSCEEEEEEBCCS--SCCSSBCSHHHHHHHHHHHTTCTTEEEEE T ss_pred CCHHHHHHHHHH-HHHCEEEHHHHHHHHHHHHHHHCCCCEEEEEEECCC--CCCCCCCCHHHHHHHHHHHHHCCCEEEEE T ss_conf 662669999973-100144146666789999876348963799997578--87678883678999999975357457888 Q ss_pred HEECCCCCCCC----HHHHHHHHHHHHHC-CCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCC Q ss_conf 10115433452----05899999998875-894722477734899998089889971132389999 Q gi|254780801|r 160 LMCIPPAMGNP----KPHFYLLSEIAREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220 (222) Q Consensus 160 LMti~p~~~d~----~~~F~~l~~l~~~~-~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222) +||==+..+++ ...+..+.++.... .....++--|.---.--+.-.++||.|.++||--|. T Consensus 168 i~SH~a~ad~~~~~~~~q~~~f~~~~~~~~~~~~~h~anS~~~~~~~~~~~d~vR~Gi~lyG~~p~ 233 (385) T 3oo2_A 168 VFTHFACADEPGDMTTEQYQRFKDMVNEAIKPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPS 233 (385) T ss_dssp EECCCSSTTSSSSHHHHHHHHHHHHHHTSCCCSEEEEECHHHHHHCCCTTCCEECCCGGGGTCCSS T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHCCCHHHCCEECCCEEEECCCCC T ss_conf 986013344332044899999988765226865200124375655827655602342799865675 No 15 >3gwq_A D-serine deaminase; YP_556991.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.00A {Burkholderia xenovorans LB400} Probab=99.24 E-value=4e-11 Score=94.73 Aligned_cols=200 Identities=11% Similarity=0.120 Sum_probs=138.3 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEE-- Q ss_conf 89999999999999999819896441899871899999999-999729810001210001111000001258730230-- Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFI-- 79 (222) Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~-~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfI-- 79 (222) |.+|++.+++... ...+++-++.|++..-+|. .+.++|..-|+-..++|++.-... .+..=++ T Consensus 56 l~~Ni~~m~~~~~---------~~gv~lrph~Kth~s~~va~~~l~~Ga~g~~vatl~Ea~~l~~~-----Gi~~illa~ 121 (426) T 3gwq_A 56 VEHNLKWMQAFVA---------EYGVKLAPHGKTTMAPQLFRRQLETGAWGITLATAHQVRAAYHG-----GVSRVLMAN 121 (426) T ss_dssp HHHHHHHHHHHHH---------HHCCEECCBCTTTCCHHHHHHHHHTTCCCEEESSHHHHHHHHHT-----TCCEEEECS T ss_pred HHHHHHHHHHHHH---------HCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHC-----CCCCEEEEC T ss_conf 9999999999887---------56974999811146499999999779987998609999999976-----999879946 Q ss_pred CCCCCCHHHHHCCC-----CHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC-CCHHHHHHHHHHCCC Q ss_conf 24432001320111-----000012222200134433333311430368897004665634657-000122234431043 Q gi|254780801|r 80 GSLQSNKVSEIVSL-----FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM-PNQTKDFVILCRQKY 153 (222) Q Consensus 80 G~LQsNKvk~i~~~-----~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~-p~el~~l~~~i~~~~ 153 (222) +...+.+++.+..+ ...+-+|||...++.|++.+.+.+++++|+|+|+++ ..|.|+. ++++.++++.+.+.+ T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~i~~~vds~~~l~~l~~~a~~~~~~~~V~i~vDtG--~~R~G~~~~e~~~~l~~~i~~~~ 199 (426) T 3gwq_A 122 QLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNKQLQVLLELGVP--GGRTGVRDAAQRNAVLEAITRYP 199 (426) T ss_dssp CCCSHHHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCCEEEEEEECCT--TSSSSBCSHHHHHHHHHHHHTST T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEEEECCCC--CCCCCCCCHHHHHHHHHHHHHCC T ss_conf 7789799999999863557405999878999999999887568068987650567--76566666589999999998577 Q ss_pred -CCCHHHHEECCCCCCCC---HHHHH----HHHHHHHHCC----CCEECCCCCHHHHHHHHH---------CCCEEEECH Q ss_conf -11001110115433452---05899----9999988758----947224777348999980---------898899711 Q gi|254780801|r 154 -QLNVEGLMCIPPAMGNP---KPHFY----LLSEIARECK----LTKLSMGMTRDFELAIAS---------GATSVRIGS 212 (222) Q Consensus 154 -~L~i~GLMti~p~~~d~---~~~F~----~l~~l~~~~~----~~~LSmGMS~D~~~Ai~~---------Gst~vRiGs 212 (222) ++.+.|+|+-.....+. .+.+. .++.+.+... ...+|.|-|.-|..+... +.++||.|+ T Consensus 200 ~~l~l~Gi~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ggs~~~~~~~~~~~~~~~~~~~~~~vrpG~ 279 (426) T 3gwq_A 200 DTLKLAGVELYEGVLKEEHEVREFLQSAVAVTRELVEQERFARAPAVLSGAGSAWYDVVAEEFVKASETGKVEVVLRPGC 279 (426) T ss_dssp TTEEEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHHHHTCCSSSSEEEEECCSTTHHHHHHHTHHHHHSSSEEEEECCCC T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCEEEECCEE T ss_conf 88656699851533477343999999999999999998532788704644688540100331002556764026973447 Q ss_pred HHCCCC Q ss_conf 323899 Q gi|254780801|r 213 GIFGER 218 (222) Q Consensus 213 ~iFG~R 218 (222) .+|+.. T Consensus 280 ~l~~D~ 285 (426) T 3gwq_A 280 YLTHDV 285 (426) T ss_dssp SSSSCS T ss_pred EEEECC T ss_conf 997046 No 16 >3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1} Probab=99.24 E-value=1.9e-10 Score=90.11 Aligned_cols=201 Identities=13% Similarity=0.121 Sum_probs=128.0 Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCC----CCHHHHHH-HHH-CCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEC Q ss_conf 999999999999981989644189987189----99999999-997-298100012100011110000012587302302 Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIRV-ALS-CGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80 (222) Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~----~~~e~I~~-~~~-~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG 80 (222) +..++.+++...+.++ ..+++||.|. +....|.. +.+ .|.+.||-.+++|+.+=... ..+...-..| T Consensus 16 l~al~~N~~~ir~~~~----~~~i~aVVKanAYGhG~~~va~~l~e~~g~d~faVa~ieEa~~LR~~---g~~~~Ilvl~ 88 (395) T 3hur_A 16 LDAAAHNLQEIREWTK----AKKVYAVLKADGYGLGAIPLAKAFQETASADALIVSNLDEALELRQA---DLTLPIWVLG 88 (395) T ss_dssp HHHHHHHHHHHHHHHT----CSEEEEECCHHHHHTCHHHHHHHHHHTTCCSEEEESCHHHHHHHHHT---TCCSCEEESS T ss_pred HHHHHHHHHHHHHHCC----CCEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHC---CCCCEEEEEC T ss_conf 9999999999996689----98599999662264888999999998789999999299999999966---9998399966 Q ss_pred CCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCH-HHHHHHHHHCCCCCCHHH Q ss_conf 4432001320111000012222200134433333311430368897004665634657000-122234431043110011 Q gi|254780801|r 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEG 159 (222) Q Consensus 81 ~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~e-l~~l~~~i~~~~~L~i~G 159 (222) +....-+..+++ .+.+.+|.+...++.+. +.++..+|.|.|+++ .+|.||.+++ +..+.+.+..++++++.| T Consensus 89 ~~~~~e~~~~~~-~~l~~~i~s~~~l~~~~----~~~~~~~vhlkiDTG--M~RlG~~~~d~~~~~~~~~~~~~~l~l~G 161 (395) T 3hur_A 89 AWDYSDLKLFID-HDIVITIPSLAWLQNLP----DFEGTLKVSLAIDTG--MTRIGFDKADEISAAKKIIDKNPQLDLFS 161 (395) T ss_dssp CCCGGGHHHHHH-TTEEEEECCHHHHHTCC----CCSSCEEEEEEBCCS--SCSSSBCCHHHHHHHHHHHHHCTTEEEEE T ss_pred CCCHHHHHHHHH-HHHCCCCCHHHHHHHHH----HHCCCCEEEEEECCC--CCCCCCCCHHHHHHHHHHHHHCCCCEEEE T ss_conf 889799999998-43234300688886667----516873599998178--88789880678999999998568862799 Q ss_pred HEECCCCCCCC--------HHHHHHHHHHHHHCC--CCEECCCCCHHHHHH---HHHCCCEEEECHHHCCCCCCC Q ss_conf 10115433452--------058999999988758--947224777348999---980898899711323899999 Q gi|254780801|r 160 LMCIPPAMGNP--------KPHFYLLSEIARECK--LTKLSMGMTRDFELA---IASGATSVRIGSGIFGERPCQ 221 (222) Q Consensus 160 LMti~p~~~d~--------~~~F~~l~~l~~~~~--~~~LSmGMS~D~~~A---i~~Gst~vRiGs~iFG~R~~~ 221 (222) +||=-+..+++ ...|..+.++....+ ....|+.-|.-.-.- -+..-+|||.|.+|||-.|.. T Consensus 162 i~SHla~ad~~~~~~~~~~~~q~~~f~~~~~~~~~~~~~~h~~nSa~~l~~~~~p~~~~d~vR~Gi~lYG~~p~~ 236 (395) T 3hur_A 162 VYTHFATADEAGEKSKAYFEEQLRRWQELTINQGFDPSLFSMANSATCIWHHDDPRISFAAIRPGQLISGVNVSN 236 (395) T ss_dssp EECCCTTTTSCSHHHHHHHHHHHHHHHHHHTTSCCCGGGEECCCHHHHHHTTTCTTSCCSEECCCGGGGTCCTTT T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHCCCCCCCCCCEEEECCCCCCCCCCC T ss_conf 976114666334211689999999999999845998426651240446632577010463475112013666775 No 17 >2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A* Probab=99.11 E-value=9.5e-10 Score=85.43 Aligned_cols=199 Identities=19% Similarity=0.203 Sum_probs=125.3 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECC----CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEE Q ss_conf 899999999999999998198964418998718----9999999999972981000121000111100000125873023 Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78 (222) Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK----~~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHf 78 (222) |++|++.|++ .+ +..+++||-| ++....|..++ .|...||--.+.|+.+=.....+. + .+-+ T Consensus 33 l~~N~~~ir~-------~~----~~~~i~aVVKAnAYGhG~~~va~~l-~~~~~faVa~~~EA~~LR~~gi~~-~-ilil 98 (379) T 2rjg_A 33 LRHNLQRLRE-------LA----PASKMVAVVKANAYGHGLLETARTL-PDADAFGVARLEEALRLRAGGITK-P-VLLL 98 (379) T ss_dssp HHHHHHHHHH-------HS----TTSEEEEECHHHHHTTCHHHHHHHC-TTCSEEEESSHHHHHHHHHTTCCS-C-EEET T ss_pred HHHHHHHHHH-------HC----CCCEEEEEEEECCCCCCHHHHHHHH-HCCCEEEEEEHHHHHHHHHHCCCC-C-EECC T ss_conf 9999999996-------68----9986999996452638789999999-609989993999999999748998-6-2103 Q ss_pred ECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC-CCCH Q ss_conf 024432001320111000012222200134433333311430368897004665634657000122234431043-1100 Q gi|254780801|r 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNV 157 (222) Q Consensus 79 IG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~-~L~i 157 (222) -|..-..-...+ ...+..-+|.+...++.+.+. ..+++.+|.|.|+++ .+|.||.|+|+..++..+..++ ++.+ T Consensus 99 ~~~~~~~~~~~~-~~~~i~~~i~s~~~l~~~~~~--~~~~~~~vhlkiDTG--M~RlG~~~~e~~~~~~~~~~~~~~l~~ 173 (379) T 2rjg_A 99 EGFFDARDLPTI-SAQHFHTAVHNEEQLAALEEA--SLDEPVTVWMKLDTG--MHRLGVRPEQAEAFYHRLTQCKNVRQP 173 (379) T ss_dssp TCCSCGGGHHHH-HHTTEEEEECSHHHHHHHHHC--CCSSCBCEEEEBCSS--CCSSSBCHHHHHHHHHHHTTCSSBCSS T ss_pred CCCCCHHHHHHH-HHCCCCCCCCCHHHHHHHHHH--HCCCCEEEEEEECCC--CCCCCCCHHHHHHHHHHHHHHCCCCCC T ss_conf 468998999999-970666356979999999987--348981799998178--888897805678889999874044410 Q ss_pred HHHEECCCCCCCC-----HHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHCCCEEEECHHHCCCCCCC Q ss_conf 1110115433452-----058999999988758947224777348999980898899711323899999 Q gi|254780801|r 158 EGLMCIPPAMGNP-----KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222) Q Consensus 158 ~GLMti~p~~~d~-----~~~F~~l~~l~~~~~~~~LSmGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222) .|+||==+..+++ ..++..+.++.+... ...++--|+-.-.--+..-+|||+|.+++|..|+. T Consensus 174 ~Gi~THfa~ad~~d~~~~~~Q~~~F~~~~~~~~-~~~h~anS~a~l~~~~~~~d~vR~Gi~lYG~~p~~ 241 (379) T 2rjg_A 174 VNIVSHFARADEPKCGATEKQLAIFNTFCEGKP-GQRSIAASGGILLWPQSHFDWVRPGIILYGVSPLE 241 (379) T ss_dssp CEEECCCSSTTCTTSTHHHHHHHHHHHHHTTCC-SCEECCCHHHHHHCGGGCSSEECCCGGGGTCCSSS T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCHHCCCCHHHHCCCCCCCCCCCCCCCEECCCCCC T ss_conf 358825577654451999999999999975223-20100178777578723476546786156366543 No 18 >2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for structural genomics, riken spring-8 center, riken genomic sciences center; 1.99A {Aquifex aeolicus VF5} Probab=97.90 E-value=0.0002 Score=49.67 Aligned_cols=168 Identities=13% Similarity=0.046 Sum_probs=108.4 Q ss_pred HHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCH Q ss_conf 9999999999998198964418998718999999999-997298100012100011110000012587302302443200 Q gi|254780801|r 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86 (222) Q Consensus 8 ~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNK 86 (222) +.|+++++.-.... +.+++.-..|.-|...|.. +.++|. .|-=.-..|+..- ....- ..-+-.|.|+.-+.. T Consensus 42 ~~i~~~~~~l~~~~----p~~~i~YAvKaN~~~~vl~~l~~~G~-g~dvaS~~El~~a-l~~G~-~~~~Ii~~g~~k~~~ 114 (420) T 2p3e_A 42 NFIKERFEAYRKAF----PDALICYAVKANFNPHLVKLLGELGA-GADIVSGGELYLA-KKAGI-PPERIVYAGVGKTEK 114 (420) T ss_dssp HHHHHHHHHHHHHS----TTSEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHH-HHTTC-CGGGEEECSSCCCHH T ss_pred HHHHHHHHHHHHHC----CCCEEEEEECCCCCHHHHHHHHHHCC-CEEEECHHHHHHH-HHCCC-CHHHEEECCCCCCCH T ss_conf 99999999999868----99889999776899999999998099-8289728999999-98179-856778724344204 Q ss_pred -HHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC------------CCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf -1320111000012222200134433333311430368897004------------665634657000122234431043 Q gi|254780801|r 87 -VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG------------YEIQKSGIMPNQTKDFVILCRQKY 153 (222) Q Consensus 87 -vk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~------------~e~~K~G~~p~el~~l~~~i~~~~ 153 (222) ++.++..-=.+-++|+...+++|...+.+.++..+|.|-||.+ +..+|+|+.++++..++..+.+++ T Consensus 115 ~l~~a~~~gv~~~~~ds~~El~~i~~~~~~~~~~~~v~lRin~~~~~~~~~~~~~~~~~skfg~~~~~~~~~~~~~~~~~ 194 (420) T 2p3e_A 115 ELTDAVDSEILMFNVESRQELDVLNEIAGKLGKKARIAIRVNPDVDPKTHPYIATGMQKSKFGVDIREAQKEYEYASKLE 194 (420) T ss_dssp HHHHHHHTTCSEEEECCHHHHHHHHHHHHHHTCCEEEEEEEEC----------------CCSCEEGGGHHHHHHHHHTCT T ss_pred HHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC T ss_conf 58989873933731489899999998887339994799998158786667553577765556644034478899998845 Q ss_pred CCCHHHHEE-CCCCCCCCHH---HHHHHHHHHH Q ss_conf 110011101-1543345205---8999999988 Q gi|254780801|r 154 QLNVEGLMC-IPPAMGNPKP---HFYLLSEIAR 182 (222) Q Consensus 154 ~L~i~GLMt-i~p~~~d~~~---~F~~l~~l~~ 182 (222) +|++.||-. ++....|+.. ....+.++.+ T Consensus 195 ~l~~~Glh~H~gS~~~~~~~~~~ai~~~~~l~~ 227 (420) T 2p3e_A 195 NLEIVGIHCHIGSQILDISPYREAVEKVVSLYE 227 (420) T ss_dssp TEEEEEEECCCCSSBSSCTHHHHHHHHHHHHHH T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 960889874476678884887767889999999 No 19 >3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus} Probab=97.85 E-value=0.00028 Score=48.62 Aligned_cols=177 Identities=11% Similarity=0.082 Sum_probs=113.1 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCH-HHHHHHHHCCCC----CCCCCC--CHHHHHHHHCCCCCCCCC Q ss_conf 8999999999999999981989644189987189999-999999972981----000121--000111100000125873 Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDS-KKIRVALSCGQV----IFAENK--LQEAKKKWIPLRKEWDVQ 75 (222) Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~-e~I~~~~~~G~~----~fGENr--vQE~~~K~~~l~~~~~i~ 75 (222) |.++++.+++....|.++.+-. ..-+.+=.+|.-|. .-++++.++|.. .||=-= .-|+..- ..... ..-+ T Consensus 74 L~~ri~~l~~aF~~Ai~~~~Y~-g~y~~~YavKaN~~~~Vle~l~~~G~~~e~~~~GlDv~S~~EL~~a-L~~g~-~~~~ 150 (648) T 3n2o_A 74 LHQRVHSICDAFNQAIEEYQYP-NKYLLVYPIKVNQQREVVDEILASQAQLETKQLGLEAGSKPELLAV-LAMAQ-HASS 150 (648) T ss_dssp HHHHHHHHHHHHHHHHHHHTCS-SCEEECEEGGGCCCHHHHHHHHHHHHHSTTCCCEEEECSHHHHHHH-HHHTS-SSCC T ss_pred HHHHHHHHHHHHHHHHHHCCCC-CCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCEEECCHHHHHHH-HHCCC-CCCE T ss_conf 9999999999999999973999-8637998873579999999999759974345664287489999999-96599-9761 Q ss_pred EEEECCCCCCH-HHHHC----CCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEC-----------CCCCCCCCCCC Q ss_conf 02302443200-13201----1100001222220013443333331143036889700-----------46656346570 Q gi|254780801|r 76 LRFIGSLQSNK-VSEIV----SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT-----------GYEIQKSGIMP 139 (222) Q Consensus 76 wHfIG~LQsNK-vk~i~----~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~-----------~~e~~K~G~~p 139 (222) ..|-|+--+.. ++.++ .....+-.+|++...+.|...+.+.++.+.+.+.||+ +++.+|+|+++ T Consensus 151 II~~n~~K~~e~I~~Al~~~~~~~~viiviDs~~EL~~I~~ia~~~~~~~~IglRIn~~~~~~~~~~~tgg~~SKFGl~~ 230 (648) T 3n2o_A 151 VIVCNGYKDREYIRLALIGEKLGHKVFIVLEKMSELDLVLREAKSLGVTPRLGIRIRLASQGAGKWQASGGEKSKFGLSA 230 (648) T ss_dssp EEEECSCCCHHHHHHHHHHHHTTCEEEEEECSTHHHHHHHHHHHHHTCCCEEEEEBCCSTTSTTTTCSSSSCCCCCCBCH T ss_pred EEECCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCH T ss_conf 78789969999999999808876572787489999999999999709985599998568667887523378767779998 Q ss_pred CHHHHHHHHHHCCCCC-CHHHH-EECCCCCCCCHH---HHHHHHHHHH Q ss_conf 0012223443104311-00111-011543345205---8999999988 Q gi|254780801|r 140 NQTKDFVILCRQKYQL-NVEGL-MCIPPAMGNPKP---HFYLLSEIAR 182 (222) Q Consensus 140 ~el~~l~~~i~~~~~L-~i~GL-Mti~p~~~d~~~---~F~~l~~l~~ 182 (222) +++.++++.+++.+++ .+.|| +-+|..-.|++. ....+..+.. T Consensus 231 ~ei~~~l~~l~~~~~l~~l~gLHfHiGSQI~d~~~~~~al~e~~~l~~ 278 (648) T 3n2o_A 231 SQVLNVISRLKKENQLDTLQLVHFHLGSQMANIRDVRNGVNESARFYC 278 (648) T ss_dssp HHHHHHHHHHHHTTCGGGEEEEECCCCSSBCCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHH T ss_conf 999999999765566550457999758752328999999999999999 No 20 >3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.10A {Escherichia coli} Probab=97.85 E-value=0.00052 Score=46.84 Aligned_cols=177 Identities=12% Similarity=0.072 Sum_probs=117.2 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHH-HHHHHCCCCCCCCCC--CHHHHHHHHCCCCCCCCCEEEE Q ss_conf 8999999999999999981989644189987189999999-999972981000121--0001111000001258730230 Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKI-RVALSCGQVIFAENK--LQEAKKKWIPLRKEWDVQLRFI 79 (222) Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I-~~~~~~G~~~fGENr--vQE~~~K~~~l~~~~~i~wHfI 79 (222) |.+|++.+++-...|..+.+. +...+++=..|.-|...| +.+.++|.. ||=-= ..|+..-.. ....++ +..|- T Consensus 96 L~~rir~l~~aF~~Ai~~~~Y-~g~y~~~YAvKAN~~~~VL~~l~~~G~~-~GlDvaS~gEL~~AL~-~g~~p~-~II~~ 171 (666) T 3nzq_A 96 LQHRLRSINAAFKRARESYGY-NGDYFLVYPIKVNQHRRVIESLIHSGEP-LGLEAGSKAELMAVLA-HAGMTR-SVIVC 171 (666) T ss_dssp HHHHHHHHHHHHHHHHHHHTC-CSCEEEEEEGGGCCCHHHHHHHHTSSSC-EEEEESSHHHHHHHHH-HHTTSC-CEEEE T ss_pred HHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCHHHHHHHHHCCCC-CCEEEECHHHHHHHHH-CCCCCC-CEEEC T ss_conf 999999999999999998099-9877999996458989999999985998-0189818999999997-289987-19988 Q ss_pred CCCCCCH-HHHHCC----CCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEC-----------CCCCCCCCCCCCHHH Q ss_conf 2443200-132011----100001222220013443333331143036889700-----------466563465700012 Q gi|254780801|r 80 GSLQSNK-VSEIVS----LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT-----------GYEIQKSGIMPNQTK 143 (222) Q Consensus 80 G~LQsNK-vk~i~~----~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~-----------~~e~~K~G~~p~el~ 143 (222) |+--+.. ++.++. ....+-.+|++..+..|.+.+.+.+..+.+.+.||+ +++.+|+|++++++. T Consensus 172 n~~K~~e~I~~Al~~~~~~~~v~iviDsl~EL~~I~~~a~~l~v~~rIglRi~l~~~~~~~~~~Tgg~~SKFGi~~~ei~ 251 (666) T 3nzq_A 172 NGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNVVPRLGVRARLASQGSGKWQSSGGEKSKFGLAATQVL 251 (666) T ss_dssp CSCCCHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHTTCCCCEEEEBCCSSSCSSTTCSSSSSCCCSCBCHHHHH T ss_pred CCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 99779899999998288771013441889999999999997298861677614665677776555887677877889999 Q ss_pred HHHHHHHCCCCC-CHHHHEE-CCCCCCCCHHH---HHHHHHHHHH Q ss_conf 223443104311-0011101-15433452058---9999999887 Q gi|254780801|r 144 DFVILCRQKYQL-NVEGLMC-IPPAMGNPKPH---FYLLSEIARE 183 (222) Q Consensus 144 ~l~~~i~~~~~L-~i~GLMt-i~p~~~d~~~~---F~~l~~l~~~ 183 (222) ++++.+++.+.+ .+.||=. +|..-.+++.. ...+..+..+ T Consensus 252 ~~i~~lk~~~~l~~L~GLHfHIGSQi~d~~~~~~al~~~~~l~~e 296 (666) T 3nzq_A 252 QLVETLREAGRLDSLQLLHFHLGSQMANIRDIATGVRESARFYVE 296 (666) T ss_dssp HHHHHHHHTTCTTTEEEEECCCCSSCCCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 999999865877754689986687644269999999999999999 No 21 >3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae} Probab=97.77 E-value=0.00032 Score=48.26 Aligned_cols=179 Identities=13% Similarity=0.073 Sum_probs=110.8 Q ss_pred HHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECCCCCC Q ss_conf 9999999999998198964418998718999999999-997298100012100011110-00001258730230244320 Q gi|254780801|r 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGSLQSN 85 (222) Q Consensus 8 ~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~LQsN 85 (222) +.|++++++.......- ...+.-..|.-|...|.. +.+.|. -|-=.-..|+..-. ..++ .-+-.|-|+..+. T Consensus 60 ~~i~~~~~~l~~a~~~~--~~~i~YAvKaN~~~~vl~~l~~~G~-G~Dv~S~~El~~al~aG~~---~~~Iv~~g~~K~~ 133 (441) T 3n2b_A 60 ATLERHWHAFDKSVGDY--PHLICYAVKANSNLGVLNTLARLGS-GFDIVSVGELERVLAAGGD---PSKVVFSGVGKTE 133 (441) T ss_dssp HHHHHHHHHHHHHTTTS--CEEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCC---GGGEEECCTTCCH T ss_pred HHHHHHHHHHHHHHHCC--CCEEEEEECCCCCHHHHHHHHHHCC-EEEEECHHHHHHHHHCCCC---CCCEEECCCCCCH T ss_conf 99999999999876058--9989999613898999999998399-3898699999999973999---2104862667988 Q ss_pred HHHHHCCCCH-HCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC------------CCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 0132011100-0012222200134433333311430368897004------------66563465700012223443104 Q gi|254780801|r 86 KVSEIVSLFD-VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG------------YEIQKSGIMPNQTKDFVILCRQK 152 (222) Q Consensus 86 Kvk~i~~~~~-~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~------------~e~~K~G~~p~el~~l~~~i~~~ 152 (222) .--...-... .+-.+||....++|...+.+.++..+|+|.||.+ +..+|+|+..+++..++..+... T Consensus 134 ~~l~~ai~~gi~~i~ids~~El~~i~~~a~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~skfGi~~~~~~~~~~~~~~~ 213 (441) T 3n2b_A 134 AEMKRALQLKIKCFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVYRLAHSL 213 (441) T ss_dssp HHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCTTTCHHHHHHHHTSSSSBCGGGHHHHHHHHHHC T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC T ss_conf 99999986244543443077999999888861999769999925888666634156877676676578899999975104 Q ss_pred CCCCHHHHEE-CCCCCCCCH---HHHHHHHHHHHHC-----CCCEECCC Q ss_conf 3110011101-154334520---5899999998875-----89472247 Q gi|254780801|r 153 YQLNVEGLMC-IPPAMGNPK---PHFYLLSEIAREC-----KLTKLSMG 192 (222) Q Consensus 153 ~~L~i~GLMt-i~p~~~d~~---~~F~~l~~l~~~~-----~~~~LSmG 192 (222) ++|++.||=+ ++....++. .....+.++.+.+ .+..|.+| T Consensus 214 ~~l~l~Glh~HiGSq~~~~~~~~~a~~~~~~~~~~l~~~g~~~~~ldiG 262 (441) T 3n2b_A 214 PNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVG 262 (441) T ss_dssp TTEEEEEEECCTTCSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECC T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC T ss_conf 6826999995168763453899999999999999999709970046633 No 22 >2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Probab=97.59 E-value=0.00078 Score=45.64 Aligned_cols=159 Identities=12% Similarity=0.031 Sum_probs=105.5 Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHH-HHCCCCCCCCCEEEECCCCC Q ss_conf 99999999999998198964418998718999999999-99729810001210001111-00000125873023024432 Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKK-WIPLRKEWDVQLRFIGSLQS 84 (222) Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K-~~~l~~~~~i~wHfIG~LQs 84 (222) ++.|+++++.-.....+ ..+++.-..|.-|...|.. +.+.|. .|-=.-..|+..- ...++ .-+..|-|+.-+ T Consensus 40 ~~~l~~n~~~~~~a~~~--~~~~i~YAvKaN~~~~vl~~l~~~G~-g~dvaS~~El~~al~~G~~---~~~Ii~~gp~k~ 113 (425) T 2qgh_A 40 FDKIKQAFLNYKEAFKG--RKSLICYALKANSNLSILSLLAHLES-GADCVSIGEIQRALKAGIK---PYRIVFSGVGKS 113 (425) T ss_dssp HHHHHHHHHHHHHTTCS--SCEEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCC---GGGEEECCTTCC T ss_pred HHHHHHHHHHHHHHCCC--CCCEEEEEEECCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCC---HHHEEECCCCCC T ss_conf 99999999999985799--99759999713899999999998099-3998299999999975998---678464256688 Q ss_pred CHHH-HHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEC------------CCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 0013-2011100001222220013443333331143036889700------------46656346570001222344310 Q gi|254780801|r 85 NKVS-EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQKSGIMPNQTKDFVILCRQ 151 (222) Q Consensus 85 NKvk-~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~------------~~e~~K~G~~p~el~~l~~~i~~ 151 (222) ...- .+...--.+.++|++..+++|...+...++..++.|.||. +...+|+|+..+++.+++..+.. T Consensus 114 ~~~i~~a~~~gv~~~~~ds~~el~~i~~~a~~~~~~~~v~lRinp~~~~~~~~~~~~g~~~skfg~~~~~~~~~~~~~~~ 193 (425) T 2qgh_A 114 AFEIEQALKLNILFLNVESFMELKTIETIAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLWAKK 193 (425) T ss_dssp HHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCCCSCGGGBCCSTTSSSSBCHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 89999887638200002137899999999986499747999982798866676523664446665026789999875542 Q ss_pred CCCCCHHHHEE-CCCCCCCCH Q ss_conf 43110011101-154334520 Q gi|254780801|r 152 KYQLNVEGLMC-IPPAMGNPK 171 (222) Q Consensus 152 ~~~L~i~GLMt-i~p~~~d~~ 171 (222) .++|++.||-. ++....|+. T Consensus 194 ~~~l~~~Glh~HvgS~~~~~~ 214 (425) T 2qgh_A 194 SAFLEPVSVHFHIGSQLLDLE 214 (425) T ss_dssp CSSEEEEEEECCCBSSBCCHH T ss_pred CCCEEEEEEEEECCCCCCCCH T ss_conf 043578789970686666606 No 23 >3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp} Probab=97.59 E-value=0.0015 Score=43.73 Aligned_cols=178 Identities=9% Similarity=0.011 Sum_probs=110.7 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHH-HHHHHCCCCC-CCCCC--CHHHHHHHHCCCCCCCCCEEE Q ss_conf 8999999999999999981989644189987189999999-9999729810-00121--000111100000125873023 Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKI-RVALSCGQVI-FAENK--LQEAKKKWIPLRKEWDVQLRF 78 (222) Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I-~~~~~~G~~~-fGENr--vQE~~~K~~~l~~~~~i~wHf 78 (222) |.+|++.+++-..+|..+.+-. ...+++=..|.-|...| +.+.++|... +|=-= ..|+..-.. + ..++-+..| T Consensus 55 l~~ri~~l~~aF~~A~~~~~y~-g~y~~~YAvKaN~~~~Vl~~l~~~G~~~~~GlEv~S~~EL~~Al~-~-g~~~~~Ii~ 131 (619) T 3nzp_A 55 IQKQIENIYGNFNKARKEFGYK-GGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMA-Y-NNEGAPITV 131 (619) T ss_dssp HHHHHHHHHHHHHHHHHHTTCC-SCEEEEEEGGGCCCHHHHHHHHHHTGGGTCEEEECSHHHHHHHHH-H-SCTTSEEEE T ss_pred HHHHHHHHHHHHHHHHHHHCCC-CCEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEECHHHHHHHHH-C-CCCCCEEEE T ss_conf 9999999999999999980878-881899886248999999999983742588189979999999996-7-989897998 Q ss_pred ECCCCCCHHHHHC--C--CCHHCCCCCCCCHHHHHHHHHHH-HCCCEEEEEEEEC-----------CCCCCCCCCCCCHH Q ss_conf 0244320013201--1--10000122222001344333333-1143036889700-----------46656346570001 Q gi|254780801|r 79 IGSLQSNKVSEIV--S--LFDVIETVSREKTASLLSLEMIK-QSRFLPVYIQVNT-----------GYEIQKSGIMPNQT 142 (222) Q Consensus 79 IG~LQsNKvk~i~--~--~~~~Ihsvds~~~a~~L~~~~~~-~~~~~~vliQVN~-----------~~e~~K~G~~p~el 142 (222) -|.--+.-+.... . ....+=.+||+...+.|...+.+ .+..+.+.+-||. +++.+|+|++++++ T Consensus 132 nG~kk~e~~~~a~l~~~l~~~v~ivvDs~~EL~~I~~~a~~~~~~~~~IglRi~~~~~~~~~~~~tgg~~SKFGl~~~ei 211 (619) T 3nzp_A 132 NGFKDRELINIGFIAAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTEL 211 (619) T ss_dssp CSCCCHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTSCSCCCEEEEEBCCTTC-------------CCSBCHHHH T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHH T ss_conf 99788599999999861188848887999999999999998549987652132367556674224688756578637889 Q ss_pred HHHHHHHHCCCCC-CHHHHEE-CCCCCCCCHH---HHHHHHHHHHH Q ss_conf 2223443104311-0011101-1543345205---89999999887 Q gi|254780801|r 143 KDFVILCRQKYQL-NVEGLMC-IPPAMGNPKP---HFYLLSEIARE 183 (222) Q Consensus 143 ~~l~~~i~~~~~L-~i~GLMt-i~p~~~d~~~---~F~~l~~l~~~ 183 (222) .++++.+++...+ ++.||-. +|..-.|++. ....+.++..+ T Consensus 212 ~~~i~~l~~~~~l~~l~GlHfHiGSQi~d~~~~~~al~~~~~l~~e 257 (619) T 3nzp_A 212 IEAVNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTE 257 (619) T ss_dssp HHHHHHHHHTTCTTTEEEEECCCCSCBCCSHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 9999999865776706899982587756489999999999999999 No 24 >2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans} Probab=97.19 E-value=0.0043 Score=40.65 Aligned_cols=158 Identities=9% Similarity=-0.038 Sum_probs=103.3 Q ss_pred HHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHH-HHCCCCCCCCCEEEECCCCCC Q ss_conf 9999999999998198964418998718999999999-99729810001210001111-000001258730230244320 Q gi|254780801|r 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKK-WIPLRKEWDVQLRFIGSLQSN 85 (222) Q Consensus 8 ~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K-~~~l~~~~~i~wHfIG~LQsN 85 (222) +.|+++++......+ ..+++.-..|..|...|.. +.+.|. .|==.-..|+.-- ...++ .-+-.|-|+.-+. T Consensus 25 ~~i~~n~~~l~~~~~---~~~~i~yA~KaN~~~~vl~~l~~~G~-g~dvaS~~El~~al~~G~~---~~~ii~~gp~k~~ 97 (428) T 2j66_A 25 DFIEAHYRQLRSRTN---PAIQFYLSLKANNNIHLAKLFRQWGL-GVEVASAGELALARHAGFS---AENIIFSGPGKKR 97 (428) T ss_dssp HHHHHHHHHHHHTSC---TTEEEEEEGGGCCCHHHHHHHHHTTC-EEEESSHHHHHHHHHTTCC---GGGEEECCSCCCH T ss_pred HHHHHHHHHHHHHCC---CCCEEEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCC---HHHEEECCCCCCH T ss_conf 999999999985268---99789999742799999999998199-2997399999999974999---2018976888989 Q ss_pred HH-HHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC-----------CCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 01-320111000012222200134433333311430368897004-----------665634657000122234431043 Q gi|254780801|r 86 KV-SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG-----------YEIQKSGIMPNQTKDFVILCRQKY 153 (222) Q Consensus 86 Kv-k~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~-----------~e~~K~G~~p~el~~l~~~i~~~~ 153 (222) .. +.++..--.+..+|+......|+..+.+.+....+.+.+|.+ ..++|+|+.++++.+.+....... T Consensus 98 ~~l~~a~~~gv~~~~~d~~~el~~i~~~~~~~~~~~~v~~r~~~~~~~~~~~~~~g~~~skfg~~~~~~~~~~~~~~~~~ 177 (428) T 2j66_A 98 SELEIAVQSGIYCIIAESVEELFYIEELAEKENKTARVAIRINPDKSFGSTAIKMGGVPRQFGMDESMLDAVMDAVRSLQ 177 (428) T ss_dssp HHHHHHHHHTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECSSCC--CCCSSSCCCCSSSEEGGGHHHHHHHHHHCT T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEECCCCCHHCCCCHHHHHHHHHHHHHCC T ss_conf 99987773595110367899999999988863996168851277654311221047771002654898988998764203 Q ss_pred CCCHHHHEE-CCCCCCCCHH Q ss_conf 110011101-1543345205 Q gi|254780801|r 154 QLNVEGLMC-IPPAMGNPKP 172 (222) Q Consensus 154 ~L~i~GLMt-i~p~~~d~~~ 172 (222) ++++.|+-+ ++....++.. T Consensus 178 ~l~~~G~H~h~gS~~~~~~~ 197 (428) T 2j66_A 178 FTKFIGIHVYTGTQNLNTDS 197 (428) T ss_dssp TEEEEEEECCCCSCBCCHHH T ss_pred CCCEEEEEECCCCCCCCCHH T ss_conf 44258888847877441035 No 25 >2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus CMCP6} PDB: 2plk_A* Probab=97.14 E-value=0.0027 Score=42.04 Aligned_cols=176 Identities=12% Similarity=0.097 Sum_probs=107.3 Q ss_pred HHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECCCCCC Q ss_conf 9999999999998198964418998718999999999-997298100012100011110-00001258730230244320 Q gi|254780801|r 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGSLQSN 85 (222) Q Consensus 8 ~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~LQsN 85 (222) +.+++++++..... ..+++.-..|..|...|.. +.+.|. .|.=.-..|+..-. ..++ .-+..|-|+.-+. T Consensus 63 ~~l~~n~~~l~~af----~~~~i~YAvKAN~~~~il~~l~~~G~-g~dv~S~~El~~al~aG~~---~~~Ii~~gp~Ks~ 134 (419) T 2plj_A 63 DVIRQQYRALKNAL----PNVTLHYALKPLPHPVVVRTLLAEGA-SFDLATTGEVELVASEGVP---ADLTIHTHPIKRD 134 (419) T ss_dssp HHHHHHHHHHHHHS----TTEEEEEESTTCCCHHHHHHHHHHTC-EEEECSHHHHHHHHHTTCC---GGGEEECCSSCCH T ss_pred HHHHHHHHHHHHHC----CCCEEEEEEECCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCC---CCEEEECCCCCCH T ss_conf 99999999999868----99889999732886999999998399-5899799999999975969---1328989998874 Q ss_pred -HHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEC--CCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEE Q ss_conf -0132011100001222220013443333331143036889700--4665634657000122234431043110011101 Q gi|254780801|r 86 -KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT--GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC 162 (222) Q Consensus 86 -Kvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~--~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMt 162 (222) -++.++..--.+-++||+..+++|+..+.+.+..+.+.+.++. +...+|+|+.+++..+++...+. .++++.||-+ T Consensus 135 eel~~Al~~gv~~~~vDs~~el~~l~~~a~~~~~~iri~~~~~~~~~~~~~kfG~~~~~~~~~~~~~~~-~~l~l~GiH~ 213 (419) T 2plj_A 135 ADIRDALAYGCNVFVVDNLNELEKFKAYRDDVELLVRLSFRNSEAFADLSKKFGCSPEQALVIIETAKE-WNIRIKGLSF 213 (419) T ss_dssp HHHHHHHHHTCCEEEECSHHHHHTTGGGTTTCEEEEEBCC---------CCCSCBCHHHHHHHHHHHHH-TTCEEEEEEC T ss_pred HHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEEEE T ss_conf 769999974984674032879999987520134201231146533333578777689999999999985-7995778888 Q ss_pred -CCCCCCCCHH---HHHHHHHHH----HHC--CCCEECCC Q ss_conf -1543345205---899999998----875--89472247 Q gi|254780801|r 163 -IPPAMGNPKP---HFYLLSEIA----REC--KLTKLSMG 192 (222) Q Consensus 163 -i~p~~~d~~~---~F~~l~~l~----~~~--~~~~LSmG 192 (222) ++....++.. .+..+.++. +.. .+..|.+| T Consensus 214 H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~idiG 253 (419) T 2plj_A 214 HVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIG 253 (419) T ss_dssp CCCTTCCCTHHHHHHHHHHHHHHHHHHHTTCCCCCEEECC T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECC T ss_conf 6467767841257799999987642001024564257317 No 26 >3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus} Probab=96.54 E-value=0.0079 Score=38.88 Aligned_cols=175 Identities=12% Similarity=0.078 Sum_probs=102.9 Q ss_pred HHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECCCCCC Q ss_conf 9999999999998198964418998718999999999-997298100012100011110-00001258730230244320 Q gi|254780801|r 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGSLQSN 85 (222) Q Consensus 8 ~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~LQsN 85 (222) ..|.+++++--..- +.|++.=..|.-|...|.. +.++|.- |-=.-..|+..-. ..++ .=+.-|-|+..+. T Consensus 46 ~~i~~~~~~~~~~~----p~v~~~YAvKaN~~~~il~~l~~~G~G-~DvaS~~El~~al~~G~~---~~~Iif~gp~Ks~ 117 (448) T 3btn_A 46 GKIVKKHSQWQTVV----AQIKPFYTVKCNSTPAVLEILAALGTG-FACSSKNEMALVQELGVS---PENIIFTSPCKQV 117 (448) T ss_dssp HHHHHHHHHHHHHC----TTEEEEEEGGGCCCHHHHHHHHHHTCE-EEESSHHHHHHHHHTTCC---GGGEEECCSSCCH T ss_pred HHHHHHHHHHHHHC----CCCEEEEEECCCCCHHHHHHHHHCCCC-EEEECHHHHHHHHHCCCC---CCCEEECCCCCCH T ss_conf 99999999999878----998688773348989999999981993-999799999999986969---0029990898999 Q ss_pred -HHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC------CCCCCCCCCCCHHHHHHHHHHCCCCCCHH Q ss_conf -01320111000012222200134433333311430368897004------66563465700012223443104311001 Q gi|254780801|r 86 -KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG------YEIQKSGIMPNQTKDFVILCRQKYQLNVE 158 (222) Q Consensus 86 -Kvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~------~e~~K~G~~p~el~~l~~~i~~~~~L~i~ 158 (222) -++.+++.=-.+-++||+...++|.+.+ ...++++.||+. ...+|+|+.++++.++++.++++ ++++. T Consensus 118 ~~l~~A~~~Gv~~~~~Ds~~eL~~i~~~~----~~~~v~~rI~~~~~~~~~~~~sKFGi~~~~~~~~~~~~k~~-~l~l~ 192 (448) T 3btn_A 118 SQIKYAAKVGVNIMTCDNEIELKKIARNH----PNAKVLLHIATEDNIGGEDGNMKFGTTLKNCRHLLECAKEL-DVQII 192 (448) T ss_dssp HHHHHHHHHTCCEEEECSHHHHHHHHHHC----TTCEEEEEBCCCC--------CCCCBCHHHHHHHHHHHHHH-TCEEE T ss_pred HHHHHHHHCCCCEEEECCHHHHHHHHHHH----CCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEE T ss_conf 99999998699759989999999999862----35880121124443332224666687778999887776228-81785 Q ss_pred HHEE-CCCCCCCCHH---HHHHHHHH---HHHC--CCCEECC--CCCH Q ss_conf 1101-1543345205---89999999---8875--8947224--7773 Q gi|254780801|r 159 GLMC-IPPAMGNPKP---HFYLLSEI---AREC--KLTKLSM--GMTR 195 (222) Q Consensus 159 GLMt-i~p~~~d~~~---~F~~l~~l---~~~~--~~~~LSm--GMS~ 195 (222) ||-+ ++....++.. ....++.+ .+++ .+..|.+ |+.. T Consensus 193 Glh~H~GS~~~d~~~~~~~i~~~~~~~~~~~~~g~~~~~idiGGGf~~ 240 (448) T 3btn_A 193 GVKFHVSSACKEYQVYVHALSDARCVFDMAGEFGFTMNMLDIGGGFTG 240 (448) T ss_dssp EEECCCCTTCCCTTHHHHHHHHHHHHHHHHHHTTCCCCEEECCSCCCS T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 645541365465487999999999999999982995367621576665 No 27 >1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A* Probab=96.53 E-value=0.016 Score=36.74 Aligned_cols=152 Identities=11% Similarity=0.027 Sum_probs=92.9 Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHH-HHHHCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECCCCC Q ss_conf 9999999999999819896441899871899999999-9997298100012100011110-0000125873023024432 Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR-VALSCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGSLQS 84 (222) Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~-~~~~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~LQs 84 (222) ++.|+++++.-.... +.+++.-..|.-|...|. .+.+.|. .|-=.-..|+..-. ..++ .-+..|-|+.-+ T Consensus 45 ~~~i~~~~~~~~~a~----p~~~~~YAvKAN~~~~il~~l~~~G~-g~dv~S~gEl~~al~~G~~---~~~Iv~~gp~Ks 116 (425) T 1f3t_A 45 LGDIVRKHETWKKCL----PRVTPFYAVKCNDDWRVLGTLAALGT-GFDCASNTEIQRVRGIGVP---PEKIIYANPCKQ 116 (425) T ss_dssp HHHHHHHHHHHHHHC----TTEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCC---GGGEEECCSSCC T ss_pred HHHHHHHHHHHHHHC----CCCEEEEEECCCCCHHHHHHHHHCCC-EEEEECHHHHHHHHHCCCC---CCEEEECCCCCC T ss_conf 999999999999868----99879998634898999999998299-3998499999999976979---674999689899 Q ss_pred CH-HHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC------CCCCCCCCCCCHHHHHHHHHHCCCCCCH Q ss_conf 00-1320111000012222200134433333311430368897004------6656346570001222344310431100 Q gi|254780801|r 85 NK-VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG------YEIQKSGIMPNQTKDFVILCRQKYQLNV 157 (222) Q Consensus 85 NK-vk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~------~e~~K~G~~p~el~~l~~~i~~~~~L~i 157 (222) .+ ++.+++.--.+.++|++...++|++... ..++.+.++.. +..+|+|+.++++.++++.+.. .++++ T Consensus 117 ~~el~~a~~~gi~~~~~ds~~el~~i~~~~~----~~~v~~ri~~~~~~~~~~~~skFG~~~~~~~~~l~~~~~-~~l~l 191 (425) T 1f3t_A 117 ISHIRYARDSGVDVMTFDCVDELEKVAKTHP----KAKMVLRISTDDSLARCRLSVKFGAKVEDCRFILEQAKK-LNIDV 191 (425) T ss_dssp HHHHHHHHHTTCCEEEECSHHHHHHHHHHCT----TCEEEEEBCC----------CCSCBCHHHHHHHHHHHHH-TTCEE T ss_pred HHHHHHHHHCCCEECCHHHHHHHHHHHHHCC----CCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEE T ss_conf 9999999983974712788999999986445----676267850455433355777776657888999988763-26469 Q ss_pred HHHEE-CCCCCCCCH Q ss_conf 11101-154334520 Q gi|254780801|r 158 EGLMC-IPPAMGNPK 171 (222) Q Consensus 158 ~GLMt-i~p~~~d~~ 171 (222) .||.. ++....|+. T Consensus 192 ~GlH~H~gS~~~d~~ 206 (425) T 1f3t_A 192 TGVSFHVGSGSTDAS 206 (425) T ss_dssp EEEECCCCSCCSCTH T ss_pred EEEEEECCCCCCCHH T ss_conf 999988788877458 No 28 >1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A* Probab=96.42 E-value=0.066 Score=32.66 Aligned_cols=162 Identities=10% Similarity=0.021 Sum_probs=103.4 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHH-HHCCCCCCCCCEEEEC Q ss_conf 899999999999999998198964418998718999999999-99729810001210001111-0000012587302302 Q gi|254780801|r 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKK-WIPLRKEWDVQLRFIG 80 (222) Q Consensus 3 i~~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K-~~~l~~~~~i~wHfIG 80 (222) |.+|+..+++-+..+....|. .+++.=..|.-|...|.. +.+.|. -|==.-..|+..- ...++ +-+..|-| T Consensus 40 l~~n~~~l~~af~~~~~~~g~---~~~i~YAvKaN~~~~vl~~l~~~G~-G~dvaS~~El~~al~~G~~---~~~Ii~~g 112 (434) T 1twi_A 40 IKINYNRYIEAFKRWEEETGK---EFIVAYAYKANANLAITRLLAKLGC-GADVVSGGELYIAKLSNVP---SKKIVFNG 112 (434) T ss_dssp HHHHHHHHHHHHHHHHHHHSC---CEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCC---GGGEEECC T ss_pred HHHHHHHHHHHHHHHHHHCCC---CEEEEEEECCCCCHHHHHHHHHHCC-CEEEECHHHHHHHHHCCCC---CCEEEECC T ss_conf 999999999988776762388---7599998624899999999998499-8399789999999963899---87189848 Q ss_pred CCCCCH-HHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCC------------CCCCCCCCCCHHH--HH Q ss_conf 443200-13201110000122222001344333333114303688970046------------6563465700012--22 Q gi|254780801|r 81 SLQSNK-VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY------------EIQKSGIMPNQTK--DF 145 (222) Q Consensus 81 ~LQsNK-vk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~------------e~~K~G~~p~el~--~l 145 (222) +.-+.+ ++.++..--.+-.+|+....+++.+.+.+.++..++.|-||..- ..+|+|+.+++.. .. T Consensus 113 p~k~~~~l~~a~~~gv~~~~~ds~~el~~i~~~~~~~~~~~~v~lRin~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~ 192 (434) T 1twi_A 113 NCKTKEEIIMGIEANIRAFNVDSISELILINETAKELGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVESGIAMKA 192 (434) T ss_dssp SSCCHHHHHHHHHTTCSEEEECSHHHHHHHHHHHHHHTCCEEEEEEEECCCCTTTCHHHHHHHHHSSCSEESTTSHHHHH T ss_pred CCCCHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 98999999989868970673113567889999999829986289996057687767440257665556643000468999 Q ss_pred HHHHHCCCCCCHHHHEE-CCCCCCCCH Q ss_conf 34431043110011101-154334520 Q gi|254780801|r 146 VILCRQKYQLNVEGLMC-IPPAMGNPK 171 (222) Q Consensus 146 ~~~i~~~~~L~i~GLMt-i~p~~~d~~ 171 (222) +....+.+++++.|+.. ++....++. T Consensus 193 ~~~~~~~~~l~~~Glh~H~gs~~~~~~ 219 (434) T 1twi_A 193 IKMALEMEYVNVVGVHCHIGSQLTDIS 219 (434) T ss_dssp HHHHHHCSSEEEEEEECCCCSSBCCSH T ss_pred HHHHHHCCCCCEEEEEEEECCCCCCCC T ss_conf 999986489972578898356534431 No 29 >7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyamines, parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A* Probab=96.12 E-value=0.069 Score=32.56 Aligned_cols=153 Identities=12% Similarity=0.058 Sum_probs=94.6 Q ss_pred HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHH-HHHHCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECCCCC Q ss_conf 9999999999999819896441899871899999999-9997298100012100011110-0000125873023024432 Q gi|254780801|r 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR-VALSCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGSLQS 84 (222) Q Consensus 7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~-~~~~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~LQs 84 (222) ++.|.+++.+-.+.- +.|++.=..|.-|...|. .+.++|. .|==.-..|+..-. ..++ .-+-.|-|+..+ T Consensus 45 ~~~i~~~~~~~~~~~----P~v~~~YAvKaN~~~~il~~l~~~G~-g~dvaS~~El~~al~~G~~---~~~Iv~~gp~K~ 116 (424) T 7odc_A 45 LGDILKKHLRWLKAL----PRVTPFYAVKCNDSRAIVSTLAAIGT-GFDCASKTEIQLVQGLGVP---AERVIYANPCKQ 116 (424) T ss_dssp HHHHHHHHHHHHHHC----TTEEEEEEGGGCCCHHHHHHHHHHTC-EEEECSHHHHHHHHHTTCC---GGGEEECCSSCC T ss_pred HHHHHHHHHHHHHHC----CCCEEEEEEEECCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCC---CCEEEECCCCCC T ss_conf 999999999999868----99879988510898999999998499-2999799999999986979---040999799999 Q ss_pred -CHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC------CCCCCCCCCCCHHHHHHHHHHCCCCCCH Q ss_conf -001320111000012222200134433333311430368897004------6656346570001222344310431100 Q gi|254780801|r 85 -NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG------YEIQKSGIMPNQTKDFVILCRQKYQLNV 157 (222) Q Consensus 85 -NKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~------~e~~K~G~~p~el~~l~~~i~~~~~L~i 157 (222) .-++.++..=-.+-++||.....+|.+. ....++++.++.. +..+|+|+.++++.++++.+.. .++++ T Consensus 117 ~~~i~~A~~~gv~~i~~ds~~EL~~l~~~----~~~~~v~~Ri~~~~~~~~~~~~skFG~~~~~~~~~~~~~~~-~~l~~ 191 (424) T 7odc_A 117 VSQIKYAASNGVQMMTFDSEIELMKVARA----HPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAKE-LNIDV 191 (424) T ss_dssp HHHHHHHHHTTCCEEEECSHHHHHHHHHH----CTTCEEEEEBCC-----------CCCBCHHHHHHHHHHHHH-TTCEE T ss_pred HHHHHHHHHCCCCEEEECCHHHHHHHHHH----CCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCE T ss_conf 99999999859957887899999999985----53577523651487545567667788578999999998764-59728 Q ss_pred HHHEE-CCCCCCCCHH Q ss_conf 11101-1543345205 Q gi|254780801|r 158 EGLMC-IPPAMGNPKP 172 (222) Q Consensus 158 ~GLMt-i~p~~~d~~~ 172 (222) .|+-. ++....|+.. T Consensus 192 ~Glh~HvgS~~~d~~~ 207 (424) T 7odc_A 192 IGVSFHVGSGCTDPDT 207 (424) T ss_dssp EEEECCCCSSCCCTHH T ss_pred EEEEEECCCCCCCHHH T ss_conf 8999972888774177 No 30 >2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, structural genomics, TB structural genomics consortium; HET: LLP; 2.33A {Mycobacterium tuberculosis H37RV} PDB: 1hkv_A* 1hkw_A Probab=95.86 E-value=0.042 Score=34.01 Aligned_cols=157 Identities=13% Similarity=0.051 Sum_probs=97.9 Q ss_pred HHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHH-HHCCCCCCCCCEEEECCCCCC Q ss_conf 9999999999998198964418998718999999999-99729810001210001111-000001258730230244320 Q gi|254780801|r 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKK-WIPLRKEWDVQLRFIGSLQSN 85 (222) Q Consensus 8 ~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K-~~~l~~~~~i~wHfIG~LQsN 85 (222) +.|+++++......+ ..+++.-..|..|...|.. +.+.|. .|-=.-..|+..- ...++ .=+-.|=|+.-+. T Consensus 50 ~~i~~n~~~l~~af~---~~~~i~yAvKaN~~~~vl~~l~~~G~-G~dvaS~~El~~al~~G~~---~~~Ii~~gp~k~~ 122 (467) T 2o0t_A 50 DDFRSRCRETAAAFG---SGANVHYAAKAFLCSEVARWISEEGL-CLDVCTGGELAVALHASFP---PERITLHGNNKSV 122 (467) T ss_dssp HHHHHHHHHHHHHTS---SGGGBEEEGGGCCCHHHHHHHHHHTC-EEEECSHHHHHHHHHTTCC---GGGEEECCTTCCH T ss_pred HHHHHHHHHHHHHCC---CCCEEEEEECCCCCHHHHHHHHHCCC-EEEEECHHHHHHHHHCCCC---CCEEEEECCCCCH T ss_conf 999999999998568---99879998742887999999998199-7999899999999975989---3329991898999 Q ss_pred -HHHHHCCCC-HHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEC------------CCCCCCCCCCCCHHHH--HHHHH Q ss_conf -013201110-0001222220013443333331143036889700------------4665634657000122--23443 Q gi|254780801|r 86 -KVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQKSGIMPNQTKD--FVILC 149 (222) Q Consensus 86 -Kvk~i~~~~-~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~------------~~e~~K~G~~p~el~~--l~~~i 149 (222) -++.++..- ..+ ++||....++|...+.+.++..++.+-+|. +...+|+|+..++... .+..+ T Consensus 123 ~~l~~a~~~gv~~i-~iDs~~El~~l~~~~~~~~~~~~v~lrl~~~~~~~~~~~~~~~~~~skfG~~~~~~~~~~~~~~~ 201 (467) T 2o0t_A 123 SELTAAVKAGVGHI-VVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAVRRV 201 (467) T ss_dssp HHHHHHHHHTCSEE-EECSHHHHHHHHHHHHHHTCCEEEEEEEECSEEEEETEEEEESSCCSSSSEETTTTHHHHHHHHH T ss_pred HHHHHHHHHCCCEE-EECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 99998775043258-84678999999998776398741345320476655542234664556557650156789999999 Q ss_pred HCCCCCCHHHHEE-CCCCCCCCHH Q ss_conf 1043110011101-1543345205 Q gi|254780801|r 150 RQKYQLNVEGLMC-IPPAMGNPKP 172 (222) Q Consensus 150 ~~~~~L~i~GLMt-i~p~~~d~~~ 172 (222) ...+++++.||.+ ++....|+.. T Consensus 202 ~~~~~~~l~Glh~H~gs~~~d~~~ 225 (467) T 2o0t_A 202 FATDHLRLVGLHSHIGSQIFDVDG 225 (467) T ss_dssp HHCSSEEEEEEECCCEEEECCSHH T ss_pred HHCCCCCEEEEEEECCCCCCCHHH T ss_conf 735698577898863888787088 No 31 >3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp} Probab=95.50 E-value=0.16 Score=30.13 Aligned_cols=111 Identities=13% Similarity=0.007 Sum_probs=66.7 Q ss_pred HHCEEEEECCCCCHHHHHHHH-HCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCC-CHHHHHCCCCHHCCCCCCC Q ss_conf 441899871899999999999-72981000121000111100000125873023024432-0013201110000122222 Q gi|254780801|r 26 DSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS-NKVSEIVSLFDVIETVSRE 103 (222) Q Consensus 26 ~~v~LiaVtK~~~~e~I~~~~-~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQs-NKvk~i~~~~~~Ihsvds~ 103 (222) ..+++.-.-|.-|...|..++ +.|. .|=-.-..|++-..... +-+-+|.|+-.+ .-++.++..-..| ++||+ T Consensus 68 ~~~~i~YAvKAN~~~~vl~~l~~~g~-g~dv~S~~El~la~~~~----~~~ii~~~p~k~~~ei~~a~~~g~~i-~~DS~ 141 (418) T 3n29_A 68 SGAKVLLALKGFAFSGAMKIVGEYLK-GCTCSGLWEAKFAKEYM----DKEIHTYSPAFKEDEIGEIASLSHHI-VFNSL 141 (418) T ss_dssp HCCEEEEETTTCCCGGGHHHHHHHSC-EEEESSHHHHHHHHHHT----CSEEEEEESSCCHHHHHHHHHHCSEE-EESSH T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCC-EEEECCHHHHHHHCCCC----CCCEEEECCCCCHHHHHHHHHCCCEE-EECCH T ss_conf 79889999643799899999997099-29952999999854569----98079949989899999999839989-97698 Q ss_pred CHHHHHHHHHHHHCCCEEEEEEEEC------------CCCCCCCCCCCCHHHHHH Q ss_conf 0013443333331143036889700------------466563465700012223 Q gi|254780801|r 104 KTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQKSGIMPNQTKDFV 146 (222) Q Consensus 104 ~~a~~L~~~~~~~~~~~~vliQVN~------------~~e~~K~G~~p~el~~l~ 146 (222) ...++|...+. ..+|+|.||. ++..+|+|+..+++.+.. T Consensus 142 ~El~~i~~~~~----~~~v~lRvnp~~~~~~~~~~~~~g~~skfGi~~~~~~~~~ 192 (418) T 3n29_A 142 AQFHKFQSKTQ----KNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVD 192 (418) T ss_dssp HHHHHHGGGCT----TSEEEEEBCCCCC----------CTTCCSSBCGGGGTTCC T ss_pred HHHHHHHHHCC----CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 99999997577----9958999935877787741014677763457578887777 No 32 >2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens} Probab=94.99 E-value=0.24 Score=28.92 Aligned_cols=171 Identities=12% Similarity=0.085 Sum_probs=100.8 Q ss_pred HHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHH-HHHHCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECCCCC- Q ss_conf 999999999999819896441899871899999999-9997298100012100011110-0000125873023024432- Q gi|254780801|r 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR-VALSCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGSLQS- 84 (222) Q Consensus 8 ~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~-~~~~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~LQs- 84 (222) ..|+++++.-...- +.|++.=..|.-|...|. .+.+.|. .|-=--..|+..-. ..++ .=+..|-|+.-+ T Consensus 56 ~~i~~~~~~~~~~~----P~v~~~YAvKaN~~~~il~~l~~~G~-G~DvaS~~El~~al~aG~~---~~~Iif~gp~K~~ 127 (471) T 2oo0_A 56 GDILKKHLRWLKAL----PRVTPFYAVKCNDSKAIVKTLAATGT-GFDCASKTEIQLVQSLGVP---PERIIYANPCKQV 127 (471) T ss_dssp HHHHHHHHHHHHHC----TTEEEEEEGGGCCCHHHHHHHHHHTC-EEEECSHHHHHHHHHTTCC---GGGEEECCSSCCH T ss_pred HHHHHHHHHHHHHC----CCCEEEEEEEECCCHHHHHHHHHCCC-EEEEECHHHHHHHHHCCCC---CCEEEECCCCCCH T ss_conf 99999999999868----99779877510898999999998499-4998599999999976989---4529997999999 Q ss_pred CHHHHHCCC-CHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCC------CCCCCCCCCCHHHHHHHHHHCCCCCCH Q ss_conf 001320111-0000122222001344333333114303688970046------656346570001222344310431100 Q gi|254780801|r 85 NKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY------EIQKSGIMPNQTKDFVILCRQKYQLNV 157 (222) Q Consensus 85 NKvk~i~~~-~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~------e~~K~G~~p~el~~l~~~i~~~~~L~i 157 (222) .-++.++.. +.+| ++||+...++|.+. ....++++-||.+. -.+|+|+.++++..+++.+.. .+|++ T Consensus 128 ~el~~A~~~gv~~i-~~dS~~EL~~i~~~----~~~~~v~lRi~~~~~~~~~~~~~kFG~~~~~~~~~~~~~~~-~~l~~ 201 (471) T 2oo0_A 128 SQIKYAANNGVQMM-TFDSEVELMKVARA----HPKAKLVLRIATDDSKAVCRLSVKFGATLRTSRLLLERAKE-LNIDV 201 (471) T ss_dssp HHHHHHHHTTCCEE-EECSHHHHHHHHHH----CTTCEEEEEECCCCTTSSBCCTTTSCBCHHHHHHHHHHHHH-TTCEE T ss_pred HHHHHHHHCCCCEE-EECCHHHHHHHHHH----CCCCCEECCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHH-CCCEE T ss_conf 99999998699799-96898999999986----02684203456786433011366766448999999998875-59518 Q ss_pred HHHEE-CCCCCCCCH---HHHHHHHHHHH---HC--CCCEECCC Q ss_conf 11101-154334520---58999999988---75--89472247 Q gi|254780801|r 158 EGLMC-IPPAMGNPK---PHFYLLSEIAR---EC--KLTKLSMG 192 (222) Q Consensus 158 ~GLMt-i~p~~~d~~---~~F~~l~~l~~---~~--~~~~LSmG 192 (222) .||-. ++....|+. .....++.+.+ ++ .+..|.+| T Consensus 202 ~GlH~HiGS~~~d~~~~~~~i~~~~~~~~~~~~~g~~~~~ldiG 245 (471) T 2oo0_A 202 VGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFSMYLLDIG 245 (471) T ss_dssp EEEEECCCBSCCCTHHHHHHHHHHHHHHHHHHHHTCCCCEEECC T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 99999758876772889999998778898887608653332247 No 33 >2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A* Probab=94.37 E-value=0.3 Score=28.28 Aligned_cols=137 Identities=12% Similarity=0.053 Sum_probs=84.1 Q ss_pred HHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHH-HHCCCCCCCCCEEEECCCCCC-HHHHHCCCCHHCCCCCC Q ss_conf 4418998718999999999-99729810001210001111-000001258730230244320-01320111000012222 Q gi|254780801|r 26 DSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKK-WIPLRKEWDVQLRFIGSLQSN-KVSEIVSLFDVIETVSR 102 (222) Q Consensus 26 ~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K-~~~l~~~~~i~wHfIG~LQsN-Kvk~i~~~~~~Ihsvds 102 (222) +.|++-=..|.-|...|.. +.+.|. -|-=.-..|+..- ...++ +-+..|-|+.-+. -++.++..--.|-++|+ T Consensus 39 p~v~~~YAvKaN~~~~vl~~l~~~G~-G~dv~S~~El~~al~~G~~---~~~Ii~~g~~K~~~el~~ai~~gv~i~~~ds 114 (372) T 2nva_A 39 PRVTPHYAVKCNNDEVLLKTMCDKNV-NFDCASSSEIKKVIQIGVS---PSRIIFAHTMKTIDDLIFAKDQGVDIATFDS 114 (372) T ss_dssp TTEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHHTCC---GGGEEECCSCCCHHHHHHHHHHTCCEEEECS T ss_pred CCCEEEEEECCCCCHHHHHHHHHCCC-EEEEECHHHHHHHHHCCCC---HHHEEECCCCCCHHHHHHHHHCCCCCCCCCH T ss_conf 89869888511898999999998498-4999699999999985979---1249994898999999999985997002653 Q ss_pred CCHHHHHHHHHHHHCCCEEEEEEEECC------CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEEC-CCCCCCCH Q ss_conf 200134433333311430368897004------6656346570001222344310431100111011-54334520 Q gi|254780801|r 103 EKTASLLSLEMIKQSRFLPVYIQVNTG------YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI-PPAMGNPK 171 (222) Q Consensus 103 ~~~a~~L~~~~~~~~~~~~vliQVN~~------~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti-~p~~~d~~ 171 (222) ....+.+.+.... .++.+.++.. ...+|+|+.+.++.++....+ ..++++.||... +....++. T Consensus 115 ~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~a~-~~~l~~~GlH~H~gS~~~~~~ 185 (372) T 2nva_A 115 SFELDKIHTYHPN----CKMILRIRCDDPNATVQLGNKFGANEDEIRHLLEYAK-QLDIEVIGISFHVGSGSRNPE 185 (372) T ss_dssp HHHHHHHHHHCTT----CEEEEEBCCCCTTCSBCCTTTSSBCGGGHHHHHHHHH-HTTCCEEEEECCCCBSBCCHH T ss_pred HHHHHHHHHHCCC----CCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HCCCEEEEEEEECCCCCCCHH T ss_conf 9999999875513----3321011015675544568877777177799999998-569818899986687658768 No 34 >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A Probab=91.24 E-value=0.86 Score=25.17 Aligned_cols=73 Identities=18% Similarity=0.332 Sum_probs=49.8 Q ss_pred HHHCCCCCCHHHHEECCCCC-CC--CHHHHHHHHHHHHHCCC--CEECCCCCH-HHHHHHHHCCCEEEECHHHCCCCCC Q ss_conf 43104311001110115433-45--20589999999887589--472247773-4899998089889971132389999 Q gi|254780801|r 148 LCRQKYQLNVEGLMCIPPAM-GN--PKPHFYLLSEIARECKL--TKLSMGMTR-DFELAIASGATSVRIGSGIFGERPC 220 (222) Q Consensus 148 ~i~~~~~L~i~GLMti~p~~-~d--~~~~F~~l~~l~~~~~~--~~LSmGMS~-D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222) .+..+..+....+||+.|-. .. ....+.+.+++++...- -+.==|.+. -....++.|++.+=+||+||+.-.+ T Consensus 132 ~l~~~~~~d~vlim~V~PG~~GQ~f~~~~l~kI~~l~~~~~~~~I~VDGGI~~~~i~~l~~aGad~iV~GSaif~~~d~ 210 (228) T 1h1y_A 132 LVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEP 210 (228) T ss_dssp HHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCSTTTHHHHHHHTCCEEEESHHHHTSSCH T ss_pred HHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCH T ss_conf 9865314565789985589888635704789999999669986499966869888999998699999977698789999 No 35 >3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti} Probab=91.01 E-value=0.96 Score=24.86 Aligned_cols=150 Identities=13% Similarity=0.046 Sum_probs=74.7 Q ss_pred HCEEEEECCCCCHHHHHHHHH-CCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCHHCCCCCCCCH Q ss_conf 418998718999999999997-2981000121000111100000125873023024432001320111000012222200 Q gi|254780801|r 27 SVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKT 105 (222) Q Consensus 27 ~v~LiaVtK~~~~e~I~~~~~-~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~~~~Ihsvds~~~ 105 (222) .+++.-..|.-|...|...+. .|. .|-=.-..|+..-...... +...-+-|+ -.+.+..++..-..| .+||+.. T Consensus 29 ~~~i~YAvKaN~~~~vl~~l~~~g~-g~dvaS~~El~~a~~~g~~--~~~i~~~~~-~~~~~~~~~~~g~~i-~vDs~~E 103 (365) T 3mt1_A 29 GAKALLALKCFATWSVFDLMRDYMD-GTTSSSLFEVRLGRERFGK--ETHAYSVAY-GDNEIDEVVSHADKI-IFNSISQ 103 (365) T ss_dssp CCEEEEETTTCCCGGGHHHHTTTSC-EEEESSHHHHHHHHHHTCS--EEEEEESCC-CTTTHHHHHHHCSEE-EESSHHH T ss_pred CCEEEEEEECCCCHHHHHHHHHCCC-EEEECCHHHHHHHHHHCCC--CCCEEECCC-CCCHHHHHHHCCCEE-EEECHHH T ss_conf 9789999831688999999998098-4996689999999965899--661772356-740999999739989-9938889 Q ss_pred HHHHHHHHHHHCCCEEEEEEEECC------------CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEE-CCCCCCCCHH Q ss_conf 134433333311430368897004------------665634657000122234431043110011101-1543345205 Q gi|254780801|r 106 ASLLSLEMIKQSRFLPVYIQVNTG------------YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKP 172 (222) Q Consensus 106 a~~L~~~~~~~~~~~~vliQVN~~------------~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMt-i~p~~~d~~~ 172 (222) .+++.+.+. ..++.|-||.. ...+|.|+...+.. ..+. .++.|+.. ++....++.. T Consensus 104 l~~i~~~~~----~~~v~lRinp~~~~~~~~~~~~~~~~s~~g~~~~~~~---~~~~----~~l~g~h~H~gs~~~~~~~ 172 (365) T 3mt1_A 104 LERFADKAA----GIARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKV---ERVM----DRINGFMIHNNCENKDFGL 172 (365) T ss_dssp HHHHGGGGT----TSEEEEEECCC----------------CCSBCCHHHH---HTTG----GGCSEEEECCC--CCSHHH T ss_pred HHHHHHHHC----CCCEEEEECCCCCCCCCEEECCCCCCCCCHHHHHHHH---HHHH----HHCCEEEEECCCCCCCHHH T ss_conf 999998720----6656899724667544234216787554317699999---9987----3176479875878875789 Q ss_pred HHHHHHHHHHH---C--CCCEECCC Q ss_conf 89999999887---5--89472247 Q gi|254780801|r 173 HFYLLSEIARE---C--KLTKLSMG 192 (222) Q Consensus 173 ~F~~l~~l~~~---~--~~~~LSmG 192 (222) .-..++.+.+. + ++..|.+| T Consensus 173 ~~~~i~~~~~~~~~~~~~~~~idiG 197 (365) T 3mt1_A 173 FDRMLGEIEERFGALIARVDWVSLG 197 (365) T ss_dssp HHHHHHHHHHHHHHHHTTSSEEECC T ss_pred HHHHHHHHHHHHHHHCCCCCEEECC T ss_conf 9999999999989868984789807 No 36 >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} Probab=91.00 E-value=0.27 Score=28.54 Aligned_cols=152 Identities=12% Similarity=0.030 Sum_probs=74.7 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCH--HCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC Q ss_conf 00012100011110000012587302302443200132011100--0012222200134433333311430368897004 Q gi|254780801|r 52 IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD--VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129 (222) Q Consensus 52 ~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~~~--~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~ 129 (222) .||-..++++.+....+.-..|.+.|=||+.....+... .+| .||..-.....+..-+.+.+.+. .+.+.++.. T Consensus 38 ~~G~~~i~~l~~~~~~~~i~~D~k~~di~~t~~~~~~~~--gad~itvH~~~g~~~l~~~~~~~~~~~~--~~~~~l~~~ 113 (207) T 3ajx_A 38 AEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKA--GADLVTVLGSADDSTIAGAVKAAQAHNK--GVVVDLIGI 113 (207) T ss_dssp HHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHT--TCSEEEEETTSCHHHHHHHHHHHHHHTC--EEEEECTTC T ss_pred HCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHH--CCCEEEEEHHHCHHHHHHHHHHHHHCCC--EEEEEECCC T ss_conf 559999999987379946401121215976899999981--9999998554244569999999997298--379993589 Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCC--CCHHHHHHHHHHHHHCCC-CEECCCCC-HHHHHHHHHCC Q ss_conf 665634657000122234431043110011101154334--520589999999887589-47224777-34899998089 Q gi|254780801|r 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG--NPKPHFYLLSEIARECKL-TKLSMGMT-RDFELAIASGA 205 (222) Q Consensus 130 ~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~--d~~~~F~~l~~l~~~~~~-~~LSmGMS-~D~~~Ai~~Gs 205 (222) +...+.++.+.+ +-+..+...+..+. .....+..++.+....+. ....-|-. .+.+.|++.|| T Consensus 114 ----------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gGi~~~~~~~a~~~Ga 180 (207) T 3ajx_A 114 ----------EDKATRAQEVRA---LGAKFVEMHAGLDEQAKPGFDLNGLLAAGEKARVPFSVAGGVKVATIPAVQKAGA 180 (207) T ss_dssp ----------SSHHHHHHHHHH---TTCSEEEEECCHHHHTSTTCCTHHHHHHHHHHTSCEEEESSCCGGGHHHHHHTTC T ss_pred ----------CCHHHHHHHHHH---HCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHCCC T ss_conf ----------997999999997---2397999803555454563138899999860377677897988158999998597 Q ss_pred CEEEECHHHCCCCCC Q ss_conf 889971132389999 Q gi|254780801|r 206 TSVRIGSGIFGERPC 220 (222) Q Consensus 206 t~vRiGs~iFG~R~~ 220 (222) +.+=|||+||++.+. T Consensus 181 D~iVvGr~I~~a~dP 195 (207) T 3ajx_A 181 EVAVAGGAIYGAADP 195 (207) T ss_dssp SEEEESHHHHTSSSH T ss_pred CEEEECHHHCCCCCH T ss_conf 999986466189999 No 37 >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} Probab=89.55 E-value=0.31 Score=28.13 Aligned_cols=151 Identities=13% Similarity=0.042 Sum_probs=71.9 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCHH--CCCCCCCCHHHHHHHHHHHHCCCEEEEEE-EEC Q ss_conf 000121000111100000125873023024432001320111000--01222220013443333331143036889-700 Q gi|254780801|r 52 IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRFLPVYIQ-VNT 128 (222) Q Consensus 52 ~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~~~~--Ihsvds~~~a~~L~~~~~~~~~~~~vliQ-VN~ 128 (222) .||-.-++++.+......=..|.+.|=||..-...+... .+|+ ||........+...+.+.+.+.. +.+. ++. T Consensus 38 ~~G~~~i~~l~~~~~~~~i~~D~K~~di~~t~~~~~~~~--gad~vtvh~~~g~~~l~~~~~~~~~~~~~--~~v~~~~~ 113 (211) T 3f4w_A 38 REGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDA--GADYVTVLGVTDVLTIQSCIRAAKEAGKQ--VVVDMICV 113 (211) T ss_dssp HHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHT--TCSEEEEETTSCHHHHHHHHHHHHHHTCE--EEEECTTC T ss_pred CCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHC--CCCEEEEEHHHCHHHHHHHHHHHHHHCCE--EEEEECCC T ss_conf 179899999998579970798884348688999999971--99999982640667899999998752443--47874089 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCC-CCCHHHHHHHHHHHHHCCCC--EECCCCC-HHHHHHHHHC Q ss_conf 466563465700012223443104311001110115433-45205899999998875894--7224777-3489999808 Q gi|254780801|r 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM-GNPKPHFYLLSEIARECKLT--KLSMGMT-RDFELAIASG 204 (222) Q Consensus 129 ~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~-~d~~~~F~~l~~l~~~~~~~--~LSmGMS-~D~~~Ai~~G 204 (222) . +..+....+.+ ..+.+.++++ +... ......+..+..+.+...-. ..+-|.+ .+...|++.| T Consensus 114 ~-----------~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~gGi~~~~~~~a~~~G 180 (211) T 3f4w_A 114 D-----------DLPARVRLLEE-AGADMLAVHT-GTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLG 180 (211) T ss_dssp S-----------SHHHHHHHHHH-HTCCEEEEEC-CHHHHHTTCCSHHHHHHHHHHCSSCEEEEESSCCTTTHHHHHTTC T ss_pred C-----------CHHHHHHHHHH-CCHHHHHHHH-HHCCHHHCCCCHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHCC T ss_conf 9-----------99999998763-5889999886-225312057699999999997187665228970605799999859 Q ss_pred CCEEEECHHHCCCCC Q ss_conf 988997113238999 Q gi|254780801|r 205 ATSVRIGSGIFGERP 219 (222) Q Consensus 205 st~vRiGs~iFG~R~ 219 (222) |+.+=+||+||++.+ T Consensus 181 ad~iVvGraI~~a~d 195 (211) T 3f4w_A 181 PDVVIVGSAITHAAD 195 (211) T ss_dssp CSEEEECHHHHTCSS T ss_pred CCEEEECHHHHCCCC T ss_conf 899998858737999 No 38 >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 Probab=85.35 E-value=1.2 Score=24.30 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=44.2 Q ss_pred CCCCCHHHHEECCCCCCC---CHHHHHHHHHHHH---HCCCC---EECCCCCH-HHHHHHHHCCCEEEECHHHCCCCCC Q ss_conf 431100111011543345---2058999999988---75894---72247773-4899998089889971132389999 Q gi|254780801|r 152 KYQLNVEGLMCIPPAMGN---PKPHFYLLSEIAR---ECKLT---KLSMGMTR-DFELAIASGATSVRIGSGIFGERPC 220 (222) Q Consensus 152 ~~~L~i~GLMti~p~~~d---~~~~F~~l~~l~~---~~~~~---~LSmGMS~-D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222) ++.+...=+||+.|-... ....+.+.+++++ +.+.. +.-=|.+. .....++.|++.+=+||+||+...+ T Consensus 129 l~~vd~vlvM~V~pG~~Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGin~~~i~~l~~~Gad~~V~GS~if~~~d~ 207 (220) T 2fli_A 129 LDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDL 207 (220) T ss_dssp TTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSSCH T ss_pred HHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCH T ss_conf 7550879898875664665554057899999999997529970699846778887999998799999978588689999 No 39 >2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomics, NPPSFA; HET: PLP; 1.70A {Thermotoga maritima MSB8} Probab=83.90 E-value=2.5 Score=22.02 Aligned_cols=174 Identities=12% Similarity=0.067 Sum_probs=89.3 Q ss_pred HHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCH Q ss_conf 9999999999998198964418998718999999999-997298100012100011110000012587302302443200 Q gi|254780801|r 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86 (222) Q Consensus 8 ~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNK 86 (222) +.|+++++.-..... ...+++.=..|.-|...|.. +.++|. .|==.-..|+.. +..+. ...-+.-|-|+.-+.. T Consensus 21 ~~l~~~~~~l~~~~~--~~~~~~~YAvKaN~~~~vl~~l~~~G~-g~dvaS~~El~~-al~~G-~~~~~ii~~~~~k~~~ 95 (386) T 2yxx_A 21 ETLRKRSRLVKEVFE--GVNLLPTFAVKANNNPVLLKILREEGF-GMDVVTKGELLA-AKLAG-VPSHTVVWNGNGKSRD 95 (386) T ss_dssp HHHHHHHHHHHHHTT--TSCEEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHH-HHHTT-CCGGGEEECCSCCCHH T ss_pred HHHHHHHHHHHHHCC--CCCCEEEEEECCCCCHHHHHHHHHHCC-CEEEECHHHHHH-HHHHC-CCCCEEEECCCCCCHH T ss_conf 999999999997457--789689999600785999999998399-679959999999-99818-9975488628989999 Q ss_pred -HHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCC------------CCCCCCCCCCHHHHHHHHHHCCC Q ss_conf -13201110000122222001344333333114303688970046------------65634657000122234431043 Q gi|254780801|r 87 -VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY------------EIQKSGIMPNQTKDFVILCRQKY 153 (222) Q Consensus 87 -vk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~------------e~~K~G~~p~el~~l~~~i~~~~ 153 (222) ++.++..--.+.++|+....+.+.... ....++.+.||..- ...|.|+..++.... +.... T Consensus 96 ~l~~a~~~gv~~~~~d~~~~~~~~~~~~---~~~~~i~lri~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~ 169 (386) T 2yxx_A 96 QMEHFLREDVRIVNVDSFEEMEIWRELN---PEGVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLEDLDSF---MERFR 169 (386) T ss_dssp HHHHHHHTTCCEEEECCHHHHHHHHHHC---CTTCEEEEEEECCCCTTTSHHHHHHHHHSSSSEEGGGHHHH---HHHHT T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHH---CCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCHHHHHHHH---HHHHH T ss_conf 9999986397510243289999998750---33410565436885666776221377667665035555689---98743 Q ss_pred CCCHHHHEE-CCCCCCCCHHH---HHHHHHHHHHCCCCEECCC Q ss_conf 110011101-15433452058---9999999887589472247 Q gi|254780801|r 154 QLNVEGLMC-IPPAMGNPKPH---FYLLSEIARECKLTKLSMG 192 (222) Q Consensus 154 ~L~i~GLMt-i~p~~~d~~~~---F~~l~~l~~~~~~~~LSmG 192 (222) ++++.||.. ++....++... +..+.++....++..|.+| T Consensus 170 ~~~l~GlhfHvgS~~~~~~~~~~a~~~~~~~~~~~~~~~idiG 212 (386) T 2yxx_A 170 SMNIRGLHVHIGSQITRVEPFVEAFSKVVRASERYGFEEINIG 212 (386) T ss_dssp TSCEEEEECCCCSSBCCSHHHHHHHHHHHHHHHHHTCSEEECC T ss_pred CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEC T ss_conf 1780489874486544554066799999998630598566346 No 40 >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose phosphate pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 Probab=83.13 E-value=2 Score=22.73 Aligned_cols=68 Identities=21% Similarity=0.364 Sum_probs=43.1 Q ss_pred CCCCHHHHEECCCCCCC---CHHHHHHHHHH---HHHCCCC---EECCCCCH-HHHHHHHHCCCEEEECHHHCCCCCC Q ss_conf 31100111011543345---20589999999---8875894---72247773-4899998089889971132389999 Q gi|254780801|r 153 YQLNVEGLMCIPPAMGN---PKPHFYLLSEI---ARECKLT---KLSMGMTR-DFELAIASGATSVRIGSGIFGERPC 220 (222) Q Consensus 153 ~~L~i~GLMti~p~~~d---~~~~F~~l~~l---~~~~~~~---~LSmGMS~-D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222) +.+...=+||+.|-..- ....+.+.+++ .++.+.. +.==|.+. -.....+.|++.+=.||+||+.-++ T Consensus 139 ~~vD~VlvMtV~PGf~GQ~f~~~~l~kI~~~~~~~~~~~~~~~I~VDGGIn~~~i~~l~~~Gad~~V~GS~if~~~d~ 216 (230) T 1rpx_A 139 DAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDY 216 (230) T ss_dssp TTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSSCH T ss_pred HHCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCH T ss_conf 657989998876898754446889999999999998659935899988878899999998699999978688689999 No 41 >1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysine, TIM-barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A* Probab=83.02 E-value=2.7 Score=21.79 Aligned_cols=143 Identities=13% Similarity=0.094 Sum_probs=84.2 Q ss_pred CEEEEECCCCCHHHHH-HHHHCCCCCCCCCCCHHHHHHH-HCCCCC-CCCCEEEECCCCCCH-HHHHCCCCHHCCCCCCC Q ss_conf 1899871899999999-9997298100012100011110-000012-587302302443200-13201110000122222 Q gi|254780801|r 28 VSLVAVSKMVDSKKIR-VALSCGQVIFAENKLQEAKKKW-IPLRKE-WDVQLRFIGSLQSNK-VSEIVSLFDVIETVSRE 103 (222) Q Consensus 28 v~LiaVtK~~~~e~I~-~~~~~G~~~fGENrvQE~~~K~-~~l~~~-~~i~wHfIG~LQsNK-vk~i~~~~~~Ihsvds~ 103 (222) .++.=..|.-|...|. .+.++|. .|-=.-..|+..-. ..++.. ..-+-.|-|+.-+.. ++.++++-..| ++||+ T Consensus 47 ~~v~YAvKaN~~~~vl~~l~~~G~-g~dvaS~~El~~al~~G~~~~~~~~~Ii~~gp~k~~~~l~~a~~~g~~i-~~ds~ 124 (425) T 1knw_A 47 DVVRFAQKACSNIHILRLMREQGV-KVDSVSLGEIERALAAGYNPQTHPDDIVFTADVIDQATLERVSELQIPV-NAGSV 124 (425) T ss_dssp SEEEEEGGGCCCHHHHHHHHHTTC-EEEECSHHHHHHHHHTTCCTTTCTTSEEEEESCCCHHHHHHHHHHTCCE-EESSH T ss_pred CEEEEEEECCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCC-CCHHH T ss_conf 989999511789999999998499-7899899999999986999667734279747855699997665405300-10258 Q ss_pred CHHHHHHHHHHHHCCCEEEEEEEEC------------CCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEE-CCCCCCCC Q ss_conf 0013443333331143036889700------------4665634657000122234431043110011101-15433452 Q gi|254780801|r 104 KTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNP 170 (222) Q Consensus 104 ~~a~~L~~~~~~~~~~~~vliQVN~------------~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMt-i~p~~~d~ 170 (222) ...++|++.+.. .++.+.||. +...+|+|+.+++...+...+.. .++++.||-. +++...++ T Consensus 125 ~el~~l~~~~~~----~~v~lRi~~~~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~-~~l~~~Glh~H~gS~~~~~ 199 (425) T 1knw_A 125 DMLDQLGQVSPG----HRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQR-HHLQLVGIHMHIGSGVDYA 199 (425) T ss_dssp HHHHHHHHHSTT----CEEEEEEECSCCSSCTTSCCSSSTTCCCSEEGGGHHHHHHHHHH-TTCEEEEEECCCCCTTCHH T ss_pred HHHHHHHHHCCC----CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEEEEEEEEECCCCCHH T ss_conf 899999750454----53110037886655465555666666554031332477899875-5925877787405544357 Q ss_pred HHHHHHHH Q ss_conf 05899999 Q gi|254780801|r 171 KPHFYLLS 178 (222) Q Consensus 171 ~~~F~~l~ 178 (222) ..+..+. T Consensus 200 -~~~~~~~ 206 (425) T 1knw_A 200 -HLEQVCG 206 (425) T ss_dssp -HHHHHHH T ss_pred -HHHHHHH T ss_conf -8899987 No 42 >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, structural genomics, center for structural genomics of infectious diseases; 2.05A {Francisella tularensis subsp} Probab=81.55 E-value=2.8 Score=21.68 Aligned_cols=67 Identities=16% Similarity=0.286 Sum_probs=42.9 Q ss_pred CCCCHHHHEECCCCCCC---CHHHHHHHHHHHH---HCCCC---EECCCCCH-HHHHHHHHCCCEEEECHHHCCCCC Q ss_conf 31100111011543345---2058999999988---75894---72247773-489999808988997113238999 Q gi|254780801|r 153 YQLNVEGLMCIPPAMGN---PKPHFYLLSEIAR---ECKLT---KLSMGMTR-DFELAIASGATSVRIGSGIFGERP 219 (222) Q Consensus 153 ~~L~i~GLMti~p~~~d---~~~~F~~l~~l~~---~~~~~---~LSmGMS~-D~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222) +.+...=+||+.|-... ....+.+.+++++ +.+.. +.==|.+. ......++|++.+=.||+||+.-. T Consensus 155 ~~iD~VlvM~V~PGf~GQ~f~~~~l~kI~~l~~~~~~~~~~~~I~VDGGIn~~ti~~l~~aGad~~V~GSaiF~~~d 231 (246) T 3inp_A 155 SNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSDS 231 (246) T ss_dssp GGCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCCTTTHHHHHTTTCCEEEESHHHHTSSC T ss_pred HHHCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCC T ss_conf 40003567421698876114577999999999887524777159997987999999999879999997868868999 No 43 >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* Probab=81.32 E-value=1.4 Score=23.67 Aligned_cols=151 Identities=11% Similarity=-0.032 Sum_probs=72.8 Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCH--HCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCC Q ss_conf 0012100011110000012587302302443200132011100--00122222001344333333114303688970046 Q gi|254780801|r 53 FAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD--VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130 (222) Q Consensus 53 fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~~~--~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~ 130 (222) ||..-++++.+......=..|.+.|=||....+.+... .+| .+|........+.+.+.+.+.+. .+.+...... T Consensus 42 ~G~~~i~~l~~~~~~~~i~~d~K~~Di~~~~~~~~~~~--gad~itvh~~~g~~~i~~~~~~~~~~~~--~~~v~~~~~~ 117 (216) T 1q6o_A 42 EGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEA--NADWVTVICCADINTAKGALDVAKEFNG--DVQIELTGYW 117 (216) T ss_dssp HCTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHT--TCSEEEEETTSCHHHHHHHHHHHHHTTC--EEEEEECSCC T ss_pred CCHHHHHHHHHHCCCCEEEHHHHCCCHHHHHHHHHHHH--CCCEEEECCCCCHHHHHHHHHHHHHHCC--CCEEEECCCC T ss_conf 79999999998789974631223277377999999984--9999998131787999999999875222--1123106999 Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCHHHH-EECCCCCC---CCHHHHHHHHHHHHHCCCCEECCC-CCHHHHHHHHHCC Q ss_conf 656346570001222344310431100111-01154334---520589999999887589472247-7734899998089 Q gi|254780801|r 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMG---NPKPHFYLLSEIARECKLTKLSMG-MTRDFELAIASGA 205 (222) Q Consensus 131 e~~K~G~~p~el~~l~~~i~~~~~L~i~GL-Mti~p~~~---d~~~~F~~l~~l~~~~~~~~LSmG-MS~D~~~Ai~~Gs 205 (222) . ++...++... ++....+ |+..+... ........++.+...--.-...-| -.++...|++.|| T Consensus 118 ~-------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~gGi~~~~~~~~~~~Ga 185 (216) T 1q6o_A 118 T-------WEQAQQWRDA-----GIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPI 185 (216) T ss_dssp C-------HHHHHHHHHT-----TCCEEEEECCHHHHHTTCCCCHHHHHHHHHHHHTTCEEEEESSCCGGGGGGGTTSCC T ss_pred C-------HHHHHHHHHC-----CCCCEEEECCCCCCCCCEECCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCC T ss_conf 8-------9999988866-----823210210243587887378889999999846897387689988036999998599 Q ss_pred CEEEECHHHCCCCC Q ss_conf 88997113238999 Q gi|254780801|r 206 TSVRIGSGIFGERP 219 (222) Q Consensus 206 t~vRiGs~iFG~R~ 219 (222) +.+=|||+||++.+ T Consensus 186 d~iVVGr~I~~a~d 199 (216) T 1q6o_A 186 HVFIAGRSIRDAAS 199 (216) T ss_dssp SEEEESHHHHTSSC T ss_pred CEEEECHHHCCCCC T ss_conf 99998825417999 No 44 >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 Probab=80.56 E-value=2.8 Score=21.73 Aligned_cols=68 Identities=16% Similarity=0.269 Sum_probs=42.6 Q ss_pred CCCCHHHHEECCCCC-CC--CHHHHHHHHHH---HHHCCCC---EECCCCC-HHHHHHHHHCCCEEEECHHHCCCCCC Q ss_conf 311001110115433-45--20589999999---8875894---7224777-34899998089889971132389999 Q gi|254780801|r 153 YQLNVEGLMCIPPAM-GN--PKPHFYLLSEI---ARECKLT---KLSMGMT-RDFELAIASGATSVRIGSGIFGERPC 220 (222) Q Consensus 153 ~~L~i~GLMti~p~~-~d--~~~~F~~l~~l---~~~~~~~---~LSmGMS-~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222) +.+...=+|++-|-. +. ....+.+.+++ .++.+.. +.==|.+ .-.+..++.|++.+=.||+||+.-.+ T Consensus 133 ~~~d~vliM~V~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~VDGGIn~~~i~~l~~~Gad~~V~GS~if~~~d~ 210 (230) T 1tqj_A 133 PVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNY 210 (230) T ss_dssp GGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEEESHHHHTSSCH T ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCH T ss_conf 536869999854787876556026899999999972359970699978888999999998699999978688489999 No 45 >3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} Probab=79.82 E-value=2 Score=22.63 Aligned_cols=160 Identities=14% Similarity=0.062 Sum_probs=72.4 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHH---CCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEC Q ss_conf 000121000111100000125873023024432001320---11100001222220013443333331143036889700 Q gi|254780801|r 52 IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128 (222) Q Consensus 52 ~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i---~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~ 128 (222) .||.+-+.++... .+.-..|.+++=||..=...++.+ ......+|+.........+...+.+.+....+++.+.. T Consensus 65 ~~G~~~i~~lk~~--~~~i~~D~K~~Di~~t~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 142 (255) T 3ldv_A 65 LFGPDFVRELHKR--GFSVFLDLKFHDIPNTCSKAVKAAAELGVWMVNVHASGGERMMAASREILEPYGKERPLLIGVTV 142 (255) T ss_dssp HHHHHHHHHHHHT--TCCEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEGGGCHHHHHHHHHHHGGGGGGSCEEEEECS T ss_pred HHCHHHHHHHHCC--CCCEEEEHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEE T ss_conf 3298999998632--54415201323565799999999862057489984157335678888888741775506888751 Q ss_pred CCCCCCCCCCCCHHH---HHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCEECCCC------CHH--- Q ss_conf 466563465700012---22344310431100111011543345205899999998875894722477------734--- Q gi|254780801|r 129 GYEIQKSGIMPNQTK---DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM------TRD--- 196 (222) Q Consensus 129 ~~e~~K~G~~p~el~---~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~LSmGM------S~D--- 196 (222) . ++.......... .+...+.. .....+...+...... ......++.... ..+..++-|- ++| T Consensus 143 ~--~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~tpGI~~~g~~~~dq~~ 216 (255) T 3ldv_A 143 L--TSMESADLQGIGILSAPQDHVLR--LATLTKNAGLDGVVCS-AQEASLLKQHLG-REFKLVTPGIRPAGSEQGDQRR 216 (255) T ss_dssp C--TTCCHHHHHHTTCCSCHHHHHHH--HHHHHHHTTCSEEECC-HHHHHHHHHHHC-TTSEEEEECCCCTTSTTSSCSS T ss_pred C--CCCCHHHHHHHCCCCCHHHHHHH--HHHHHHHHCCCCCCCC-HHHHHHHHHHHC-CCCCEECCCCCCCCCCCCCCCC T ss_conf 3--44577789973444667788889--8867765066655566-788999998750-3453536664048886665543 Q ss_pred ---HHHHHHHCCCEEEECHHHCCCCC Q ss_conf ---89999808988997113238999 Q gi|254780801|r 197 ---FELAIASGATSVRIGSGIFGERP 219 (222) Q Consensus 197 ---~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222) .+.|++.|++.+=|||+|+++.+ T Consensus 217 ~~tp~~ai~~gaDiiIVGRaI~~a~d 242 (255) T 3ldv_A 217 IMTPAQAIASGSDYLVIGRPITQAAH 242 (255) T ss_dssp SCCHHHHHHTTCSEEEECHHHHTCSC T ss_pred CCCHHHHHHCCCCEEEECCCCCCCCC T ss_conf 48999999879999998962358989 No 46 >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} PDB: 3exs_A* 3ext_A Probab=74.09 E-value=1.1 Score=24.44 Aligned_cols=159 Identities=9% Similarity=-0.022 Sum_probs=73.5 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC Q ss_conf 00012100011110000012587302302443200132011100001222220013443333331143036889700466 Q gi|254780801|r 52 IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131 (222) Q Consensus 52 ~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e 131 (222) .||-.-+++++++...++=..|++.|=||......+...-...-.+|........+.......+.+. ..+++.+.+..+ T Consensus 43 ~~G~~~i~~l~~~~~~~~i~~DlK~~Dip~t~~~~~~~~gad~itvh~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 121 (221) T 3exr_A 43 QVGSELVEVLRSLFPDKIIVADTKCADAGGTVAKNNAVRGADWMTCICSATIPTMKAARKAIEDINP-DKGEIQVELYGD 121 (221) T ss_dssp HHCTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHTTTCSEEEEETTSCHHHHHHHHHHHHHHCT-TTCEEEEECCSS T ss_pred HCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHH-CCCEEEEECCCC T ss_conf 2599999999986899707987675148205789998716989998041138899999999997400-263789872689 Q ss_pred CCCCCCCCCHHHHHHHHHHC--CCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCE-ECCCC-CHHHHHHHHHCCCE Q ss_conf 56346570001222344310--4311001110115433452058999999988758947-22477-73489999808988 Q gi|254780801|r 132 IQKSGIMPNQTKDFVILCRQ--KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK-LSMGM-TRDFELAIASGATS 207 (222) Q Consensus 132 ~~K~G~~p~el~~l~~~i~~--~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~-LSmGM-S~D~~~Ai~~Gst~ 207 (222) ...+.+..+.+.-.. ..+....+-+.-.+. ........+++... .... .--|- .++.+.|++.||+. T Consensus 122 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~vr~~~~~-~~~I~v~GGi~~~~~~~~~~~Gad~ 192 (221) T 3exr_A 122 -----WTYDQAQQWLDAGISQAIYHQSRDALLAGETW---GEKDLNKVKKLIEM-GFRVSVTGGLSVDTLKLFEGVDVFT 192 (221) T ss_dssp -----CCHHHHHHHHHTTCCEEEEECCHHHHHHTCCC---CHHHHHHHHHHHHH-TCEEEEESSCCGGGGGGGTTCCCSE T ss_pred -----CCHHHHHHHHHCCCCEEEEEECCCCCCCCCCC---CHHHHHHHHHHHCC-CCEEEECCCCCCCCHHHHHHCCCCE T ss_conf -----99999999885463359876426566567767---99999999997436-9706557986847899999869899 Q ss_pred EEECHHHCCCCCC Q ss_conf 9971132389999 Q gi|254780801|r 208 VRIGSGIFGERPC 220 (222) Q Consensus 208 vRiGs~iFG~R~~ 220 (222) +=+||+||++.++ T Consensus 193 iVVGraI~~a~dP 205 (221) T 3exr_A 193 FIAGRGITEAKNP 205 (221) T ss_dssp EEECHHHHTSSSH T ss_pred EEECCHHCCCCCH T ss_conf 9988143179999 No 47 >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* Probab=74.07 E-value=5 Score=20.01 Aligned_cols=69 Identities=19% Similarity=0.329 Sum_probs=43.4 Q ss_pred CCCCCHHHHEECCCCCC-CC--HHHHHHHHHHHH---HCCCC---EECCCCC-HHHHHHHHHCCCEEEECH-HHCCC-CC Q ss_conf 43110011101154334-52--058999999988---75894---7224777-348999980898899711-32389-99 Q gi|254780801|r 152 KYQLNVEGLMCIPPAMG-NP--KPHFYLLSEIAR---ECKLT---KLSMGMT-RDFELAIASGATSVRIGS-GIFGE-RP 219 (222) Q Consensus 152 ~~~L~i~GLMti~p~~~-d~--~~~F~~l~~l~~---~~~~~---~LSmGMS-~D~~~Ai~~Gst~vRiGs-~iFG~-R~ 219 (222) ++.+...=+|++.|-.. .+ ...+.+.+++++ +.++. +.==|.+ ......++.|++.+=+|| +||+. .+ T Consensus 126 l~~~D~vl~M~V~pG~~Gq~f~~~~l~ki~~l~~~~~~~~~~~~I~VDGGIn~e~i~~l~~aGad~~V~Gss~iF~~~~~ 205 (231) T 3ctl_A 126 IHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQATYEKLMAAGADVFIVGTSGLFNHAEN 205 (231) T ss_dssp GGGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESCCSTTTHHHHHHHTCCEEEECTTTTGGGCSS T ss_pred HCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCHHHCCCCCC T ss_conf 13328899957768878753258899999999999983499936999899889999999986989999881887589999 Q ss_pred C Q ss_conf 9 Q gi|254780801|r 220 C 220 (222) Q Consensus 220 ~ 220 (222) + T Consensus 206 ~ 206 (231) T 3ctl_A 206 I 206 (231) T ss_dssp H T ss_pred H T ss_conf 9 No 48 >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum 3D7} SCOP: c.1.2.2 Probab=72.50 E-value=5.5 Score=19.76 Aligned_cols=68 Identities=21% Similarity=0.321 Sum_probs=45.7 Q ss_pred CCCCHHHHEECCCCCC-C--CHHHHHHHHHHHHHCC-CC-EECCCCCH-HHHHHHHHCCCEEEECHHHCCCCCC Q ss_conf 3110011101154334-5--2058999999988758-94-72247773-4899998089889971132389999 Q gi|254780801|r 153 YQLNVEGLMCIPPAMG-N--PKPHFYLLSEIARECK-LT-KLSMGMTR-DFELAIASGATSVRIGSGIFGERPC 220 (222) Q Consensus 153 ~~L~i~GLMti~p~~~-d--~~~~F~~l~~l~~~~~-~~-~LSmGMS~-D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222) ..+...=+||+.|-.. . ....+.+.+++++... +. +.=-|.+. ......+.|++.+=+||+||+.-++ T Consensus 137 ~~iD~vl~m~V~PGf~GQ~f~~~~l~kI~~lr~~~~~~~I~VDGGIn~e~i~~l~~~Gad~~V~GSaif~~~d~ 210 (227) T 1tqx_A 137 NLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDP 210 (227) T ss_dssp TCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEEESSCCHHHHHHHHHHTCCEEEESHHHHTCSSH T ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHCCCCH T ss_conf 43257999984136787434612678999999837997699985688899999998399999965698789999 No 49 >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* Probab=70.64 E-value=6 Score=19.49 Aligned_cols=116 Identities=14% Similarity=-0.000 Sum_probs=64.8 Q ss_pred CCCHHHHHHHHH-HHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHC--CCCCCHHHHEECCCCCCCCH-HHHHH- Q ss_conf 220013443333-33114303688970046656346570001222344310--43110011101154334520-58999- Q gi|254780801|r 102 REKTASLLSLEM-IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ--KYQLNVEGLMCIPPAMGNPK-PHFYL- 176 (222) Q Consensus 102 s~~~a~~L~~~~-~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~--~~~L~i~GLMti~p~~~d~~-~~F~~- 176 (222) |.+++.++-+.. +..+....+.+.++..+...+.|..+++..+++..+.+ +.-+++-+=+.+++...... ..|.. T Consensus 207 R~Rf~~Eii~air~~~g~~~~i~~R~~~~~~~~~~g~~~~e~~~~~~~l~~~gvD~i~vs~G~~~~~~~~~~~~~~~~~~ 286 (363) T 3l5l_A 207 RSRFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPI 286 (363) T ss_dssp HHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHH T ss_conf 06789999999998626677402105732357889864889999999998618767998547322676666674200579 Q ss_pred HHHHHHHCCCCEECCCCCHHH---HHHHHHC-CCEEEECHHHCCC Q ss_conf 999988758947224777348---9999808-9889971132389 Q gi|254780801|r 177 LSEIARECKLTKLSMGMTRDF---ELAIASG-ATSVRIGSGIFGE 217 (222) Q Consensus 177 l~~l~~~~~~~~LSmGMS~D~---~~Ai~~G-st~vRiGs~iFG~ 217 (222) .+.+++....+.+.-|.=.|. +.+|++| +.+|=+|+.+... T Consensus 287 a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iad 331 (363) T 3l5l_A 287 AERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLAD 331 (363) T ss_dssp HHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSCSEEECCHHHHHC T ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHC T ss_conf 999998659308997786999999999987995234751998869 No 50 >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A Probab=67.19 E-value=6.4 Score=19.32 Aligned_cols=140 Identities=13% Similarity=0.134 Sum_probs=69.0 Q ss_pred CCCCEEEECCC---CCCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEE--CCCCC--C-CCCCCCCHHH Q ss_conf 58730230244---320013201110000122222001344333333114303688970--04665--6-3465700012 Q gi|254780801|r 72 WDVQLRFIGSL---QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN--TGYEI--Q-KSGIMPNQTK 143 (222) Q Consensus 72 ~~i~wHfIG~L---QsNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN--~~~e~--~-K~G~~p~el~ 143 (222) .|.++|=||+. |-.++.+.-..+-.+|........+...+.+.+.++...+++-|- ++.+. . ..|. ..... T Consensus 70 ~D~K~~DI~~tv~~~~~~~~~~~~d~~tvh~~~g~~~i~~~~~~~~~~~~~~~~l~~v~~~ts~~~~~~~~~~~-~~~~~ 148 (245) T 1eix_A 70 LDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGM-TLSPA 148 (245) T ss_dssp EEEEECSCHHHHHHHHHHHHHHTCSEEEEBGGGCHHHHHHHHHTTGGGGGGCCEEEEECSCTTCCHHHHHTTTC-CSCHH T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCC-CCCHH T ss_conf 77100563179999999777438989999887777789999877875088773489996157745788876433-55415 Q ss_pred HHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCEECCC------CCHH------HHHHHHHCCCEEEEC Q ss_conf 2234431043110011101154334520589999999887589472247------7734------899998089889971 Q gi|254780801|r 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMG------MTRD------FELAIASGATSVRIG 211 (222) Q Consensus 144 ~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~LSmG------MS~D------~~~Ai~~Gst~vRiG 211 (222) ......... ..-.|+-.+.....+ -..++.+... .+..++=| -.+| .+.|++.||+.+=|| T Consensus 149 ~~~~~~a~~--~~~~~~~g~~~~~~~----~~~~~~~~~~-~~~~~tPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iIVG 221 (245) T 1eix_A 149 DYAERLAAL--TQKCGLDGVVCSAQE----AVRFKQVFGQ-EFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIG 221 (245) T ss_dssp HHHHHHHHH--HHHTTCSEEECCGGG----HHHHHHHHCS-SSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEEC T ss_pred HHHHHHHHH--HHHCCCCCCCCCHHH----HHHHHHHHCC-CCCEECCCCCCCCCCCCCCEECCCHHHHHHCCCCEEEEC T ss_conf 799999988--876086754355588----9999986076-553657871447887677610179999998699999989 Q ss_pred HHHCCCCC Q ss_conf 13238999 Q gi|254780801|r 212 SGIFGERP 219 (222) Q Consensus 212 s~iFG~R~ 219 (222) ++|..+.+ T Consensus 222 R~I~~a~d 229 (245) T 1eix_A 222 RPVTQSVD 229 (245) T ss_dssp HHHHTSSS T ss_pred CCCCCCCC T ss_conf 73358999 No 51 >1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Thermotoga maritima} SCOP: c.1.2.3 Probab=63.21 E-value=6.6 Score=19.23 Aligned_cols=140 Identities=14% Similarity=0.109 Sum_probs=68.8 Q ss_pred CCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCC-CHH--CCCCCCCCHHHHHHHHHHHHCCCEEEEE-EEECC Q ss_conf 0121000111100000125873023024432001320111-000--0122222001344333333114303688-97004 Q gi|254780801|r 54 AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDV--IETVSREKTASLLSLEMIKQSRFLPVYI-QVNTG 129 (222) Q Consensus 54 GENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~-~~~--Ihsvds~~~a~~L~~~~~~~~~~~~vli-QVN~~ 129 (222) |.+-+.++.++ .++=..|.++|=||+--.+-++.+..+ +++ ||+..-..-.++.. ...++ .++. -+=++ T Consensus 47 G~~~i~~L~~~--g~~IflDlKl~DIpnTv~~~v~~~~~~g~d~vtvH~~~G~~~l~~a~---~~~~~--~il~Vt~LTS 119 (213) T 1vqt_A 47 GKKIFDELAKR--NLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHSCAGYESVERAL---SATDK--HVFVVVKLTS 119 (213) T ss_dssp CTHHHHHHHTT--TCEEEEEEEECSCHHHHHHHHHHHCCTTEEEEEEEGGGCHHHHHHHH---HHCSS--EEEEECCCTT T ss_pred HHHHHHHHHHC--CCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHH---HCCCC--CEEEEEEECC T ss_conf 09999999977--99689984215747999999999870699799987868899999998---50357--4469998447 Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCEECCCC-----CHH-----HHH Q ss_conf 6656346570001222344310431100111011543345205899999998875894722477-----734-----899 Q gi|254780801|r 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM-----TRD-----FEL 199 (222) Q Consensus 130 ~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~LSmGM-----S~D-----~~~ 199 (222) -.|. .+ +....+..+..+.+.|+.+ +| ....+.+++....++=|- ++| -.. T Consensus 120 ----~~~~-~~---~~~~~~~~l~~~g~dgvv~-~~----------~~~~~~~~~~~~iitPGIr~~~~~dDQkrv~t~~ 180 (213) T 1vqt_A 120 ----MEGS-LE---DYMDRIEKLNKLGCDFVLP-GP----------WAKALREKIKGKILVPGIRMEVKADDQKDVVTLE 180 (213) T ss_dssp ----SCCC-HH---HHHHHHHHHHHHTCEEECC-HH----------HHHHHTTTCCSCEEECCBC---------CCBCHH T ss_pred ----CCCC-HH---HHHHHHHHHHHHCCCCCCC-CH----------HHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCHH T ss_conf ----7754-38---9999999987633475667-40----------8999999808986716726677789874227899 Q ss_pred HHHHCCCEEEECHHHCCCCC Q ss_conf 99808988997113238999 Q gi|254780801|r 200 AIASGATSVRIGSGIFGERP 219 (222) Q Consensus 200 Ai~~Gst~vRiGs~iFG~R~ 219 (222) |++.||+.+=||++|..+-+ T Consensus 181 ai~~GAD~iVVGR~I~~a~d 200 (213) T 1vqt_A 181 EMKGIANFAVLGREIYLSEN 200 (213) T ss_dssp HHTTTCSEEEESHHHHTSSC T ss_pred HHHCCCCEEEECCCCCCCCC T ss_conf 99849999998964568999 No 52 >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 Probab=61.01 E-value=9.1 Score=18.27 Aligned_cols=108 Identities=10% Similarity=0.034 Sum_probs=57.6 Q ss_pred CHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC-CCHHHHHHHHHHCCCCCCHHHHEE-CCCCCC-CCHHHHHHHHHH Q ss_conf 00134433333311430368897004665634657-000122234431043110011101-154334-520589999999 Q gi|254780801|r 104 KTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM-PNQTKDFVILCRQKYQLNVEGLMC-IPPAMG-NPKPHFYLLSEI 180 (222) Q Consensus 104 ~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~-p~el~~l~~~i~~~~~L~i~GLMt-i~p~~~-d~~~~F~~l~~l 180 (222) +.+.++..+|.+.+ +++++++=+-+........ |+.+...+....+ .++.+ +-+ .|.... ...+....++++ T Consensus 142 ~~l~~l~~~c~~~g--~p~llE~~~~~~~~~d~~~~~~~i~~a~r~~~e-~G~Di--~K~~~P~~~~~~~~~~~~~~~~~ 216 (304) T 1to3_A 142 NMVKEFNELCHSNG--LLSIIEPVVRPPRCGDKFDREQAIIDAAKELGD-SGADL--YKVEMPLYGKGARSDLLTASQRL 216 (304) T ss_dssp HHHHHHHHHHHTTT--CEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTT-SSCSE--EEECCGGGGCSCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCC--CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH-CCCCE--EEEECCCCCCHHHHHHHHHHHHH T ss_conf 99999999998639--966999851477766541079999999999987-39987--99978877532246899999998 Q ss_pred HHHCC--CCEECCCCCH-----HHHHHHHHCCCEEEECHHHCC Q ss_conf 88758--9472247773-----489999808988997113238 Q gi|254780801|r 181 ARECK--LTKLSMGMTR-----DFELAIASGATSVRIGSGIFG 216 (222) Q Consensus 181 ~~~~~--~~~LSmGMS~-----D~~~Ai~~Gst~vRiGs~iFG 216 (222) .+... .-.||-|++. -++.|++.|+.=+=+|++||- T Consensus 217 ~~~~~~p~vvLggg~~~e~f~~~l~~A~~aGa~G~~~GR~iwq 259 (304) T 1to3_A 217 NGHINMPWVILSSGVDEKLFPRAVRVAMEAGASGFLAGRAVWS 259 (304) T ss_dssp HHTCCSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHHHG T ss_pred HCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEECHHHHH T ss_conf 5158994899828989899999999999769939985626434 No 53 >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid, csgid, Mg-bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A* Probab=59.64 E-value=3.7 Score=20.94 Aligned_cols=150 Identities=10% Similarity=0.054 Sum_probs=71.9 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCH--HCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC Q ss_conf 00012100011110000012587302302443200132011100--0012222200134433333311430368897004 Q gi|254780801|r 52 IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD--VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129 (222) Q Consensus 52 ~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~~~--~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~ 129 (222) .||-.-+.+++++...++=..|++.|=||..-...++.. .+| .+|.......++++.+.+.+.+.... +-++.. T Consensus 44 ~~G~~~i~~l~~~~~~~~i~~D~K~~Di~~~~~~~~~~~--gad~itvh~~~~~~~l~~~~~~~~~~g~~~~--v~l~~~ 119 (218) T 3jr2_A 44 AEGMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEA--GADWITVSAAAHIATIAACKKVADELNGEIQ--IEIYGN 119 (218) T ss_dssp HHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHH--TCSEEEEETTSCHHHHHHHHHHHHHHTCEEE--EECCSS T ss_pred HCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH--CCCEEEEECCCCHHHHHHHHHHHHHCCCCEE--EECCCC T ss_conf 359999999997578973999985145727788998874--4989999503454789999998764188437--842788 Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEEC-CCCCCC---CHHHHHHHHHHHHHCCC-CEECCCCC-HHHHHHHHH Q ss_conf 6656346570001222344310431100111011-543345---20589999999887589-47224777-348999980 Q gi|254780801|r 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI-PPAMGN---PKPHFYLLSEIARECKL-TKLSMGMT-RDFELAIAS 203 (222) Q Consensus 130 ~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti-~p~~~d---~~~~F~~l~~l~~~~~~-~~LSmGMS-~D~~~Ai~~ 203 (222) . +++....+.+. ++...-+|+. ++.... +-.....++++... +. -...=|.+ .+...|++. T Consensus 120 ~-------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~-~~~i~v~gGi~~~~~~~~~~~ 186 (218) T 3jr2_A 120 W-------TMQDAKAWVDL-----GITQAIYHRSRDAELAGIGWTTDDLDKMRQLSAL-GIELSITGGIVPEDIYLFEGI 186 (218) T ss_dssp C-------CHHHHHHHHHT-----TCCEEEEECCHHHHHHTCCSCHHHHHHHHHHHHT-TCEEEEESSCCGGGGGGGTTS T ss_pred C-------CHHHHHHHHHC-----CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC-CCCEEECCCCCCCCHHHHHHC T ss_conf 9-------99999998864-----8228699972442447736689999999998489-970786799682579999984 Q ss_pred CCCEEEECHHHCCCC Q ss_conf 898899711323899 Q gi|254780801|r 204 GATSVRIGSGIFGER 218 (222) Q Consensus 204 Gst~vRiGs~iFG~R 218 (222) ||+.+=+||+||++. T Consensus 187 GaD~iVvGraI~~a~ 201 (218) T 3jr2_A 187 KTKTFIAGRALAGAE 201 (218) T ss_dssp CEEEEEESGGGSHHH T ss_pred CCCEEEECHHHCCCC T ss_conf 999999883660799 No 54 >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* Probab=58.76 E-value=9.9 Score=18.02 Aligned_cols=97 Identities=16% Similarity=0.179 Sum_probs=58.3 Q ss_pred CCEEEEEEEECC---CCCC------CCC--CCCCHHHHHHHHHHCCCC--CCHHHHEECCCCCCCCHHHHHHHHHHHHHC Q ss_conf 430368897004---6656------346--570001222344310431--100111011543345205899999998875 Q gi|254780801|r 118 RFLPVYIQVNTG---YEIQ------KSG--IMPNQTKDFVILCRQKYQ--LNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184 (222) Q Consensus 118 ~~~~vliQVN~~---~e~~------K~G--~~p~el~~l~~~i~~~~~--L~i~GLMti~p~~~d~~~~F~~l~~l~~~~ 184 (222) ....+.++.-++ +.+. +.. -.|+++.+|++... ..- +.+-=.-.+-+....|+-.|..++++++.. T Consensus 125 h~~gv~VEaElG~igg~e~~~~~~~~~~~~T~Peea~~Fv~~Tg-vD~LAvaiGn~HG~yk~~~~p~ld~~~l~~I~~~~ 203 (307) T 3n9r_A 125 HNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQ-VDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT 203 (307) T ss_dssp HHTTCEEEEEESCCCCC----------CCSCCHHHHHHHHHHHC-CSEEEECSSCCSSSBCCSSSCCCCHHHHHHHHHHH T ss_pred HHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC-CCEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHHC T ss_conf 25398289874121576787665553212479899999987108-87342211223367778898776899999988505 Q ss_pred CCCEECCCCC-------------------------HHHHHHHHHCCCEEEECHHHC Q ss_conf 8947224777-------------------------348999980898899711323 Q gi|254780801|r 185 KLTKLSMGMT-------------------------RDFELAIASGATSVRIGSGIF 215 (222) Q Consensus 185 ~~~~LSmGMS-------------------------~D~~~Ai~~Gst~vRiGs~iF 215 (222) ..+--.=|.| .++..||++|-.=|-|||.+. T Consensus 204 ~vPLVlHG~S~v~d~~~~~~~~~~~~~HG~sG~p~e~i~~ai~~Gi~KiNi~T~l~ 259 (307) T 3n9r_A 204 NIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLR 259 (307) T ss_dssp CSCEEESSCCCCCHHHHHHHHHTTCCCTTCBCCCHHHHHHHHHTTEEEEEECHHHH T ss_pred CCCEECCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECHHHH T ss_conf 88655478876617777764012334678889999999999977946999787999 No 55 >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* Probab=58.30 E-value=7.4 Score=18.88 Aligned_cols=157 Identities=13% Similarity=0.100 Sum_probs=74.4 Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCC-CHH--CCCCCCCCHHHHHHHHHHHH---CCCEEEEEE Q ss_conf 000121000111100000125873023024432001320111-000--01222220013443333331---143036889 Q gi|254780801|r 52 IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDV--IETVSREKTASLLSLEMIKQ---SRFLPVYIQ 125 (222) Q Consensus 52 ~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~-~~~--Ihsvds~~~a~~L~~~~~~~---~~~~~vliQ 125 (222) .+|..-+.++.+.. +.=..|.++|=||+.=.+-++.+... +|+ +|+.......+.....+.+. ......++. T Consensus 42 ~~G~~~i~~l~~~~--~~If~DlK~~DIgnTv~~~~~~~~~~~~d~~tvh~~~g~~~~~aa~~~~~~~~~~~~~~~~~~~ 119 (246) T 2yyu_A 42 QEGPAIVAFLKEQG--HAVFLDLKLHDIPNTVKQAMKGLARVGADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMRPRCIA 119 (246) T ss_dssp HHTHHHHHHHHHTT--CEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEGGGCHHHHHHHHHHHHHHSCSSSCCCEEEE T ss_pred HHCHHHHHHHHHCC--CCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEE T ss_conf 40999999999749--9889996325628999999999985287299994578807899999975421000466652799 Q ss_pred EE-CCCCC-----CCCCCCCCHHHHHHHHH-HCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCEECCC------ Q ss_conf 70-04665-----63465700012223443-1043110011101154334520589999999887589472247------ Q gi|254780801|r 126 VN-TGYEI-----QKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMG------ 192 (222) Q Consensus 126 VN-~~~e~-----~K~G~~p~el~~l~~~i-~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~LSmG------ 192 (222) +- .+... ...|.. ..+.+.+.+. .....-.+.|+.|-|. ....+++.... .+..++=| T Consensus 120 ~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~a~~a~~~g~~g~v~s~~-------~~~~ir~~~~~-~~~ivtPGI~~~~~ 190 (246) T 2yyu_A 120 VTQLTSTDERMLHEELWIS-RPLVETVAHYAALAKESGLDGVVCSAN-------EAAFIKERCGA-SFLAVTPGIRFADD 190 (246) T ss_dssp ESSCTTCCHHHHHHTSCCC-SCHHHHHHHHHHHHHHHTCCEEECCHH-------HHHHHHHHHCT-TSEEEECCCCCCC- T ss_pred EEECCCCHHHHHHHHCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCHH-------HHHHHHHHCCC-CEEEEECCCCCCCC T ss_conf 9842672067765311211-007899999998999739853005627-------89999986498-72998267356778 Q ss_pred CCHH------HHHHHHHCCCEEEECHHHCCCCC Q ss_conf 7734------89999808988997113238999 Q gi|254780801|r 193 MTRD------FELAIASGATSVRIGSGIFGERP 219 (222) Q Consensus 193 MS~D------~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222) ..+| ...|++.||+.+=||++|.++.+ T Consensus 191 ~~~Dq~r~~tp~~Ai~~GaD~iIVGR~I~~a~d 223 (246) T 2yyu_A 191 AAHDQVRVVTPRKARALGSDYIVIGRSLTRAAD 223 (246) T ss_dssp ------CCCCHHHHHHHTCSEEEECHHHHTSSS T ss_pred CCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCC T ss_conf 877714027999999849999998952368999 No 56 >2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A Probab=54.92 E-value=8.5 Score=18.47 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=20.9 Q ss_pred HHHHHHHCCC---CEECCC-CCHHHHHHHHHCCCEEEECHH Q ss_conf 9999887589---472247-773489999808988997113 Q gi|254780801|r 177 LSEIARECKL---TKLSMG-MTRDFELAIASGATSVRIGSG 213 (222) Q Consensus 177 l~~l~~~~~~---~~LSmG-MS~D~~~Ai~~Gst~vRiGs~ 213 (222) +..+.+.+++ ..+-.| ...|.+.|-+.|-.-|-|++. T Consensus 151 ~~~~~~~~g~~p~~~l~vgD~~~di~aA~~aG~~~i~v~~~ 191 (221) T 2wf7_A 151 FIAAAHAVGVAPSESIGLEDSQAGIQAIKDSGALPIGVGRP 191 (221) T ss_dssp HHHHHHHTTCCGGGEEEEESSHHHHHHHHHHTCEEEEESCH T ss_pred HHHHHHHHCCCHHHEEEECCCHHHHHHHHHCCCEEEEECCH T ss_conf 99999993978678798828988999999859999999974 No 57 >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, structural genomics, joint center for structural genomics, JCSG; 1.91A {Haemophilus somnus 129PT} Probab=53.87 E-value=12 Score=17.49 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=40.7 Q ss_pred CCCCCHHHHEECCCCCC-CC--HHHHHHHHHHHHH---CCCC---EECCCCCHHH-HHHHHHCC--CEEEECHHHCCC Q ss_conf 43110011101154334-52--0589999999887---5894---7224777348-99998089--889971132389 Q gi|254780801|r 152 KYQLNVEGLMCIPPAMG-NP--KPHFYLLSEIARE---CKLT---KLSMGMTRDF-ELAIASGA--TSVRIGSGIFGE 217 (222) Q Consensus 152 ~~~L~i~GLMti~p~~~-d~--~~~F~~l~~l~~~---~~~~---~LSmGMS~D~-~~Ai~~Gs--t~vRiGs~iFG~ 217 (222) ++.+...=+||+-|-.. .. ...+.+.+++++- .+.. +.-=|.+.+- +...+.|+ +.+=.||+||+. T Consensus 146 l~~iD~VlvMsV~PG~~Gq~f~~~~l~ki~~l~~~~~~~~~~~~I~VDGGIn~~~i~~l~~aga~vd~~V~GS~iF~~ 223 (237) T 3cu2_A 146 LDQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMTLELAKYFKQGTHQIDWLVSGSALFSG 223 (237) T ss_dssp TTTCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCCHHHHHHHHHSSSCCCCEEECGGGGSS T ss_pred HCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCEEEECCCEECC T ss_conf 455786999987789887678821889999999999707998069997994889999999734899989968430496 No 58 >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 1loq_A* 1lor_A* 1kly_A* 3lhz_A* 3m44_A 3lhw_A* ... Probab=49.41 E-value=6.5 Score=19.25 Aligned_cols=152 Identities=12% Similarity=0.043 Sum_probs=75.1 Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCC-CCHH--CCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC Q ss_conf 0012100011110000012587302302443200132011-1000--012222200134433333311430368897004 Q gi|254780801|r 53 FAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDV--IETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129 (222) Q Consensus 53 fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~-~~~~--Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~ 129 (222) +|-+-+.++.++... +=..|.++|=||+.=..=++.+.+ .+|+ ||..-.....+...+.+.+.+.. +++-..++ T Consensus 51 ~G~~~i~~l~~~~~~-~if~D~K~~DIp~T~~~~~~~~~~~gad~~TVh~~~g~~~i~~~~~~~~~~~~~--v~~l~~~s 127 (228) T 3m47_A 51 EGMDIIAEFRKRFGC-RIIADFKVADIPETNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGRE--VFLLTEMS 127 (228) T ss_dssp HCTHHHHHHHHHHCC-EEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCE--EEEECCCC T ss_pred CCHHHHHHHHHHCCC-CEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCE--EEEEEECC T ss_conf 398999999976898-299960100077799999999985599899996679978999999998840980--48986226 Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCC--CCEECCCC---CHHHHHHHHHC Q ss_conf 66563465700012223443104311001110115433452058999999988758--94722477---73489999808 Q gi|254780801|r 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--LTKLSMGM---TRDFELAIASG 204 (222) Q Consensus 130 ~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~--~~~LSmGM---S~D~~~Ai~~G 204 (222) .....- +......+++.... +..+.|+.+++-. ...++.+++.++ +..++=|- ++|-..++ .| T Consensus 128 ~~~~~~-~~~~~~~~~~~l~~---~~g~~g~v~~~~~-------~~ei~~ir~~~~~~~~~vtPGI~~~g~~~~d~~-~~ 195 (228) T 3m47_A 128 HPGAEM-FIQGAADEIARMGV---DLGVKNYVGPSTR-------PERLSRLREIIGQDSFLISPGVGAQGGDPGETL-RF 195 (228) T ss_dssp SGGGGT-THHHHHHHHHHHHH---HTTCCEEECCSSC-------HHHHHHHHHHHCSSSEEEECC---------CGG-GT T ss_pred CCHHHH-HHHHHHHHHHHHHH---HHCCCCCCCCCCC-------HHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHH-HH T ss_conf 620778-88889999999999---7188750225578-------999999998459871799667657889977887-54 Q ss_pred CCEEEECHHHCCCCC Q ss_conf 988997113238999 Q gi|254780801|r 205 ATSVRIGSGIFGERP 219 (222) Q Consensus 205 st~vRiGs~iFG~R~ 219 (222) ++.+-||++|+.+++ T Consensus 196 ad~iIvGR~I~~a~d 210 (228) T 3m47_A 196 ADAIIVGRSIYLADN 210 (228) T ss_dssp CSEEEECHHHHTSSC T ss_pred CCEEEECCHHCCCCC T ss_conf 999998900203999 No 59 >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJM; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* Probab=42.70 E-value=18 Score=16.36 Aligned_cols=114 Identities=12% Similarity=0.158 Sum_probs=64.2 Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC--CCCCHHHHEECCCCCCCCHHHHH-HHH Q ss_conf 220013443333331143036889700466563465700012223443104--31100111011543345205899-999 Q gi|254780801|r 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVEGLMCIPPAMGNPKPHFY-LLS 178 (222) Q Consensus 102 s~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~--~~L~i~GLMti~p~~~d~~~~F~-~l~ 178 (222) |.+++.++-+...+. ..-++.+.++.+ +....|..+++...+++.+.+. .-+.+.+-....+....+...|. ..+ T Consensus 193 R~Rf~~Eii~avr~~-v~~~~~vri~~~-~~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (338) T 1z41_A 193 RYRFLREIIDEVKQV-WDGPLFVRVSAS-DYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAE 270 (338) T ss_dssp HHHHHHHHHHHHHHH-CCSCEEEEEECC-CCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHH T ss_pred HHHHHHHHHHHHHHH-HCCCCEEEECCC-CCCCCCCCHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 788999999999998-546764885454-345788644669999999998397400013343013544468862078999 Q ss_pred HHHHHCCCCEECCCCCH---HHHHHHHHC-CCEEEECHHHCCC Q ss_conf 99887589472247773---489999808-9889971132389 Q gi|254780801|r 179 EIARECKLTKLSMGMTR---DFELAIASG-ATSVRIGSGIFGE 217 (222) Q Consensus 179 ~l~~~~~~~~LSmGMS~---D~~~Ai~~G-st~vRiGs~iFG~ 217 (222) .+++....+.+.-|.=. +-+.+|++| +.+|=+|+.+... T Consensus 271 ~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iad 313 (338) T 1z41_A 271 KIREQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRD 313 (338) T ss_dssp HHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHC T ss_pred HHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHC T ss_conf 9998759528996894999999999987995523865998869 No 60 >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} PDB: 3hf3_A* Probab=42.32 E-value=18 Score=16.32 Aligned_cols=100 Identities=14% Similarity=0.187 Sum_probs=59.4 Q ss_pred HCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCH---HHHEECCCCCCCC-HHHH-HHHHHHHHHCCCCEEC Q ss_conf 114303688970046656346570001222344310431100---1110115433452-0589-9999998875894722 Q gi|254780801|r 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNV---EGLMCIPPAMGNP-KPHF-YLLSEIARECKLTKLS 190 (222) Q Consensus 116 ~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i---~GLMti~p~~~d~-~~~F-~~l~~l~~~~~~~~LS 190 (222) .+...+|.+.++.. |..+.|..++|...++..+.+. ++.+ -+-.......... ...+ .....+++....+... T Consensus 216 vg~~~~i~~R~s~~-d~~~~g~~~ee~~~~~~~l~~~-g~d~~~~s~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~ 293 (349) T 3hgj_A 216 VPRELPLFVRVSAT-DWGEGGWSLEDTLAFARRLKEL-GVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGA 293 (349) T ss_dssp SCTTSCEEEEEESC-CCSTTSCCHHHHHHHHHHHHHT-TCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCCEEEE T ss_pred CCCCCEEEEECCCC-CCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEE T ss_conf 08997289967702-1467998779999999999875-975164125642124345667643368999999875996899 Q ss_pred CCCC---HHHHHHHHHC-CCEEEECHHHCCC Q ss_conf 4777---3489999808-9889971132389 Q gi|254780801|r 191 MGMT---RDFELAIASG-ATSVRIGSGIFGE 217 (222) Q Consensus 191 mGMS---~D~~~Ai~~G-st~vRiGs~iFG~ 217 (222) -|.- .+-+.+|++| +.+|=+|+.+... T Consensus 294 ~G~i~~~e~ae~~l~~g~~D~V~~gR~~iad 324 (349) T 3hgj_A 294 VGLITTPEQAETLLQAGSADLVLLGRVLLRD 324 (349) T ss_dssp CSSCCCHHHHHHHHHTTSCSEEEESTHHHHC T ss_pred ECCCCCHHHHHHHHHCCCCCHHHHHHHHHHC T ss_conf 8893999999999987992115988999869 No 61 >3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain, orotidine 5'-monophosphate decarboxylase, human, 5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens} PDB: 3bvj_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A* Probab=40.51 E-value=7.2 Score=18.97 Aligned_cols=181 Identities=11% Similarity=0.041 Sum_probs=87.2 Q ss_pred CEEEEECCCCCHHHHHHHHH-C---------C---CCCCCCCCCHHHHHHHHC--CCCCCCCCEEEECCCCCCHHHHH-- Q ss_conf 18998718999999999997-2---------9---810001210001111000--00125873023024432001320-- Q gi|254780801|r 28 VSLVAVSKMVDSKKIRVALS-C---------G---QVIFAENKLQEAKKKWIP--LRKEWDVQLRFIGSLQSNKVSEI-- 90 (222) Q Consensus 28 v~LiaVtK~~~~e~I~~~~~-~---------G---~~~fGENrvQE~~~K~~~--l~~~~~i~wHfIG~LQsNKvk~i-- 90 (222) -+|+..-=..+.+++..+.+ + | +.+||..-++++.+.+.. +.=..|.++|=||+.-..-+... T Consensus 84 s~L~vAlD~~s~~e~l~la~~l~p~I~~lKig~~li~~~G~~~I~~L~~~a~~~~~~If~DlK~~DIgnTv~~~~~~~~~ 163 (312) T 3g3d_A 84 TNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKELITLAKCHEFLIFEDRKFADIGNTVKKQYEGGIF 163 (312) T ss_dssp CCEEEECCCSCHHHHHHHHHHHGGGCSEEEECGGGCTTCCHHHHHHHHHHHHHHTCEEEEEEEECSCHHHHHHHHHCTTT T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEECHHHHHHCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHH T ss_conf 88899963699999999999848852699987899743799999999998764597699742226834589999999998 Q ss_pred --CCCCH--HCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHC-CCCCCHHHHEECCC Q ss_conf --11100--00122222001344333333114303688970046656346570001222344310-43110011101154 Q gi|254780801|r 91 --VSLFD--VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPP 165 (222) Q Consensus 91 --~~~~~--~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~-~~~L~i~GLMti~p 165 (222) ..++| .+|.+......+.+.+.+...+ ..|++=...+...+ ....+..+....+.. .+...+ |..+-.+ T Consensus 164 ~~~~~adivTvh~~~G~~~i~~~~~~~~~~~--~gv~lLt~~s~~~~---~~~~~~~~~~~~~a~~~~~~~~-g~v~~s~ 237 (312) T 3g3d_A 164 KIASWADLVNAHVVPGSGVVKGLQEVGLPLH--RGCLLIAEMSSTGS---LATGDYTRAAVRMAEEHSEFVV-GFISGSR 237 (312) T ss_dssp CHHHHCSEEEEESTTCTHHHHHHHHHHTTTT--CEEEEECCCSSTTC---CCCHHHHHHHHHHHHHTTTTEE-EEECSSC T ss_pred HHHCCCCEEEEECCCCHHHHHHHHHHHCCCC--CCCEEEEEECCHHH---HHCCCHHHHHHHHHHHHHHCCC-CEEEHHH T ss_conf 6303465687514786788999997401036--55159998233233---3214689999999997054475-7043121 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEECCCC---CHHHHHHH-HHCCCEEEECHHHCCCCC Q ss_conf 3345205899999998875894722477---73489999-808988997113238999 Q gi|254780801|r 166 AMGNPKPHFYLLSEIARECKLTKLSMGM---TRDFELAI-ASGATSVRIGSGIFGERP 219 (222) Q Consensus 166 ~~~d~~~~F~~l~~l~~~~~~~~LSmGM---S~D~~~Ai-~~Gst~vRiGs~iFG~R~ 219 (222) .... +.|.. +.--+++...+=|. -.+-+.|| +.||+++=||+.|..+.+ T Consensus 238 ~~~~--~~~~~---vtPGIrl~~~~~~~g~q~~TP~~Ai~~~GaDiiVVGR~It~A~D 290 (312) T 3g3d_A 238 VSMK--PEFLH---LTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAAD 290 (312) T ss_dssp CCCC--TTSEE---EECSBCSSSEECTTSCEEBCHHHHHHTTCCSEEEESHHHHTSSS T ss_pred HHCC--CCEEE---ECCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCCCC T ss_conf 3206--52389---54884536689998877689999998659989998921368989 No 62 >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Probab=33.15 E-value=25 Score=15.37 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=47.2 Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCC-CHHHHHCCCCHH-CCCCCCCCHHHHHHHHHHHHCCCE Q ss_conf 981000121000111100000125873023024432-001320111000-012222200134433333311430 Q gi|254780801|r 49 GQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS-NKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFL 120 (222) Q Consensus 49 G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQs-NKvk~i~~~~~~-Ihsvds~~~a~~L~~~~~~~~~~~ 120 (222) ...++|.++++-+.++...+....++.+|. ..+.. +-....+..+|+ |-++|+...-..++..|.+.++++ T Consensus 64 ~~~dIG~~Ka~~a~~~l~~~np~v~i~~~~-~~i~~~~~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPl 136 (640) T 1y8q_B 64 QKKHVGRSKAQVAKESVLQFYPKANIVAYH-DSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPL 136 (640) T ss_dssp CGGGTTSBHHHHHHHHHHTTCTTCEEEEEE-SCTTSTTSCHHHHTTCSEEEECCSCHHHHHHHHHHHHHHTCCE T ss_pred CHHHCCCHHHHHHHHHHHHHCCCCEEEEEC-CCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCE T ss_conf 945678879999999999878998799972-5657830389997259999989999999999999999849987 No 63 >1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 Probab=30.93 E-value=27 Score=15.13 Aligned_cols=155 Identities=14% Similarity=0.186 Sum_probs=73.3 Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCC-CHH--CCCCCCCCHHHHHHHHHHHH----CCCEEEEEE Q ss_conf 00121000111100000125873023024432001320111-000--01222220013443333331----143036889 Q gi|254780801|r 53 FAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDV--IETVSREKTASLLSLEMIKQ----SRFLPVYIQ 125 (222) Q Consensus 53 fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~-~~~--Ihsvds~~~a~~L~~~~~~~----~~~~~vliQ 125 (222) +|-.-+.++.++ .++=..|.++|=||+.-..-++.+... +|+ +|++.-....+.....+.+. ...+.++.- T Consensus 42 ~G~~~i~~l~~~--~~~If~D~K~~DIgnTv~~~~~~~~~~~ad~vtvh~~~G~~~l~aa~~~~~~~~~~~~~~~~ll~v 119 (239) T 1dbt_A 42 EGPSIVKQLKER--NCELFLDLKLHDIPTTVNKAMKRLASLGVDLVNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLIAV 119 (239) T ss_dssp HTHHHHHHHHHT--TCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGGGCHHHHHHHHHHHHHHSCTTSCCCEEEEE T ss_pred CCHHHHHHHHHC--CCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 498999999976--982999851147478999998744125676899927773889999998765421202677506899 Q ss_pred EECCCC---CCCC-CCCCCHHHHHHHHH-HCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHC--CCCEECCC------ Q ss_conf 700466---5634-65700012223443-10431100111011543345205899999998875--89472247------ Q gi|254780801|r 126 VNTGYE---IQKS-GIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC--KLTKLSMG------ 192 (222) Q Consensus 126 VN~~~e---~~K~-G~~p~el~~l~~~i-~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~--~~~~LSmG------ 192 (222) .-.+.- ..+. ......+.+.+... .......+.|+.|-|- .+..+++.. .+..++=| T Consensus 120 ~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~a~~~~~~g~v~~~~----------~~~~~r~~~~~~~~ivtPGI~~~~~ 189 (239) T 1dbt_A 120 TQLTSTSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSVH----------EAKAIYQAVSPSFLTVTPGIRMSED 189 (239) T ss_dssp CSCTTCCHHHHHHTSCBCSCHHHHHHHHHHHHHHTTCSEEECCGG----------GHHHHTTTSCTTCEEEECCBCCTTS T ss_pred EECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEECCHH----------HHHHHHHHCCCCEEEECCCCCCCCC T ss_conf 713775468898754204515688999999999849962106548----------8999997426750898556344677 Q ss_pred CCHH------HHHHHHHCCCEEEECHHHCCCCC Q ss_conf 7734------89999808988997113238999 Q gi|254780801|r 193 MTRD------FELAIASGATSVRIGSGIFGERP 219 (222) Q Consensus 193 MS~D------~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222) -.+| ...|++.||+.+=||++|..+.+ T Consensus 190 ~~~dq~r~~tp~~ai~~Gad~iIVGR~I~~a~d 222 (239) T 1dbt_A 190 AANDQVRVATPAIAREKGSSAIVVGRSITKAED 222 (239) T ss_dssp CCTTCSSCBCHHHHHHTTCSEEEECHHHHTSSC T ss_pred CCCCCEECCCHHHHHHCCCCEEEECCCCCCCCC T ss_conf 778863017999999879999998985668999 No 64 >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural genomics, joint center for structural genomics, JCSG; 2.18A {Thermotoga maritima MSB8} SCOP: c.1.5.1 Probab=30.04 E-value=28 Score=15.03 Aligned_cols=51 Identities=29% Similarity=0.399 Sum_probs=37.1 Q ss_pred HHHHHHHHHH---HHHCCCCEECCC---CCHHHHHHHHHCCCEEEECHHHCCCCCCC Q ss_conf 0589999999---887589472247---77348999980898899711323899999 Q gi|254780801|r 171 KPHFYLLSEI---ARECKLTKLSMG---MTRDFELAIASGATSVRIGSGIFGERPCQ 221 (222) Q Consensus 171 ~~~F~~l~~l---~~~~~~~~LSmG---MS~D~~~Ai~~Gst~vRiGs~iFG~R~~~ 221 (222) .+.+....+- +.+.+.+.++.| -|+|.--||.+||+.|=+|+.+=|....+ T Consensus 323 ~pq~sav~~~~~~~~~~~v~iiADGGi~~~gdi~KAla~GAd~VMlGs~lAg~~EsP 379 (494) T 1vrd_A 323 VPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAP 379 (494) T ss_dssp CCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSS T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHCCCHHHHCHHHCCCCCCC T ss_conf 217889999999986559669934885766669999872776623332532654589 No 65 >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Probab=27.71 E-value=30 Score=14.77 Aligned_cols=49 Identities=27% Similarity=0.386 Sum_probs=34.9 Q ss_pred HHHHHHH---HHHHHCCCCEEC---CCCCHHHHHHHHHCCCEEEECHHHCCCCCC Q ss_conf 5899999---998875894722---477734899998089889971132389999 Q gi|254780801|r 172 PHFYLLS---EIARECKLTKLS---MGMTRDFELAIASGATSVRIGSGIFGERPC 220 (222) Q Consensus 172 ~~F~~l~---~l~~~~~~~~LS---mGMS~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222) +.+.... +.+++...+.++ +--|+|.--||.+||..|=+|+.+=|.-.. T Consensus 320 pq~tai~~~a~~~~~~~v~IIADGGi~~sGDi~KAla~GAd~VMlGs~lAg~~Es 374 (491) T 1zfj_A 320 PQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEA 374 (491) T ss_dssp CHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBSSC T ss_pred CCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHCCCCHHHHCHHHCCCCCC T ss_conf 6164999999989864982883588475218999987078553333363156689 No 66 >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, structural genomics, NPPSFA; 1.60A {Pyrococcus horikoshii OT3} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* Probab=27.60 E-value=30 Score=14.76 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=67.0 Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCC-CCHH--CCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECC Q ss_conf 0012100011110000012587302302443200132011-1000--012222200134433333311430368897004 Q gi|254780801|r 53 FAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDV--IETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129 (222) Q Consensus 53 fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~-~~~~--Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~~ 129 (222) ||-.-+.++.++. .++=..|.+.|=||+.=.+-++.+.. .+|+ ||........+.. .+.+ ..++-+.++ T Consensus 38 ~G~~~i~~l~~~~-~~~i~~D~K~~Dig~t~~~~~~~~~~~gad~~Tvh~~~g~~~i~~~----~~~~---~~~~~~~~s 109 (208) T 2czd_A 38 SGVDIIRRLKEET-GVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTFVGRDSVMAV----KELG---EIIMVVEMS 109 (208) T ss_dssp HCTTHHHHHHHHH-CCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHH----HTTS---EEEEECCCC T ss_pred CCHHHHHHHHHCC-CCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHH----HHHH---CCEEEECCC T ss_conf 3989999998657-9829987520135750999999976169988997402787899877----5430---111464257 Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCC--CCEECCC---CCHHHHHHHHHC Q ss_conf 66563465700012223443104311001110115433452058999999988758--9472247---773489999808 Q gi|254780801|r 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--LTKLSMG---MTRDFELAIASG 204 (222) Q Consensus 130 ~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~--~~~LSmG---MS~D~~~Ai~~G 204 (222) ...+. .+.-+-...+++.... ....|+=+.+. ++ ..+..+++.+. ...+.=| -.++-+.|++.| T Consensus 110 ~~~~~-~~~~~~~~~~~~~a~~---~~~~g~~~~~~---~~----~~i~~ir~~~~~~~~i~~pGI~~~~~~~~~ai~~G 178 (208) T 2czd_A 110 HPGAL-EFINPLTDRFIEVANE---IEPFGVIAPGT---RP----ERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVKAG 178 (208) T ss_dssp SGGGG-TTTGGGHHHHHHHHHH---HCCSEEECCCS---ST----HHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHHHT T ss_pred CCCHH-HHHHHHHHHHHHHHHH---HHCCCCCCCCC---CH----HHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHCC T ss_conf 85144-3201489999999998---75178745506---64----67899998728887799689587899999999819 Q ss_pred CCEEEECHHHCCCCC Q ss_conf 988997113238999 Q gi|254780801|r 205 ATSVRIGSGIFGERP 219 (222) Q Consensus 205 st~vRiGs~iFG~R~ 219 (222) |+.|=+||+|+++.+ T Consensus 179 ad~iVvGR~I~~a~d 193 (208) T 2czd_A 179 ADYIIVGRAIYNAPN 193 (208) T ss_dssp CSEEEECHHHHTSSS T ss_pred CCEEEECHHHCCCCC T ss_conf 999998955537989 No 67 >3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} Probab=27.10 E-value=31 Score=14.70 Aligned_cols=158 Identities=17% Similarity=0.128 Sum_probs=82.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHCEEEEECCCC--CHHHHHH----HHHCCCCCCCCCC--------CHHHHHHHHCCCC Q ss_conf 999999999999999819896441899871899--9999999----9972981000121--------0001111000001 Q gi|254780801|r 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMV--DSKKIRV----ALSCGQVIFAENK--------LQEAKKKWIPLRK 70 (222) Q Consensus 5 ~nl~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~--~~e~I~~----~~~~G~~~fGENr--------vQE~~~K~~~l~~ 70 (222) .-+.++...|++. +++| -+-+||+-++. +.++|.. +-+.|++. ..+. ..|+-++..+..+ T Consensus 344 ~G~~NL~~HIeNi-~~fG----~pvVVAIN~F~~DT~~Ei~~v~~~~~~~Gv~~-avs~~wa~GGeGa~eLA~~Vv~a~~ 417 (543) T 3do6_A 344 EGFKNLRVHVENL-RKFN----LPVVVALNRFSTDTEKEIAYVVKECEKLGVRV-AVSEVFKKGSEGGVELAKAVAEAAK 417 (543) T ss_dssp HHHHHHHHHHHHH-HHTT----CCEEEEEECCTTCCHHHHHHHHHHHHTTTCEE-EEECHHHHGGGGSHHHHHHHHHHCC T ss_pred HHHHHHHHHHHHH-HHCC----CCEEECCCCCCCCCHHHHHHHHHHHHHCCCCE-EEECHHHCCCCCHHHHHHHHHHHCC T ss_conf 8776699987528-8639----97365368998878889999999887629644-7742122367366999999987532 Q ss_pred CCCCCEEEECCCC---CCHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCC-CEEEEE---EEECCCCCCCCCCCCCHHH Q ss_conf 2587302302443---20013201110000122222001344333333114-303688---9700466563465700012 Q gi|254780801|r 71 EWDVQLRFIGSLQ---SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR-FLPVYI---QVNTGYEIQKSGIMPNQTK 143 (222) Q Consensus 71 ~~~i~wHfIG~LQ---sNKvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~-~~~vli---QVN~~~e~~K~G~~p~el~ 143 (222) +-..+|+=++. ..||+.|++...--..|+=-..|++=-+..++.+- .+||++ |-.+|.+|+.-|. |.+.. T Consensus 418 --~~~~~~LY~~~~sl~eKIetIAk~IYGA~~V~~S~~A~~qL~~~e~~G~~~LPVCmAKTqySfSdDp~l~Ga-P~gf~ 494 (543) T 3do6_A 418 --DVEPAYLYEMNDPVEKKIEILAKEIYRAGRVEFSDTAKNALKFIKKHGFDELPVIVAKTPKSISHDPSLRGA-PEGYT 494 (543) T ss_dssp --CCCCCCSSCTTSCHHHHHHHHHHHTSCCSEEEECHHHHHHHHHHHHTTCTTSCEEEECCSSSSSSCTTCCSC-CCSCE T ss_pred --CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHCCC-CCCCE T ss_conf --566655788889999999999997028870668999999999999739998887888078775779242099-99976 Q ss_pred HHHHHHHCCCC----CCHHH-HEECCCCCCCCH Q ss_conf 22344310431----10011-101154334520 Q gi|254780801|r 144 DFVILCRQKYQ----LNVEG-LMCIPPAMGNPK 171 (222) Q Consensus 144 ~l~~~i~~~~~----L~i~G-LMti~p~~~d~~ 171 (222) =-+..++-..+ +-+.| +||||.....|. T Consensus 495 l~VrevrlsaGAGFiVai~G~ImtMPGLPk~Pa 527 (543) T 3do6_A 495 FVVSDLFVSAGAGFVVALSGDINLMPGLPKKPN 527 (543) T ss_dssp EEECEEEEETTTTEEEEECSCCCSSCCCCSSCG T ss_pred EEEEEEEECCCCCEEEEEECCCCCCCCCCCCCC T ss_conf 874289986888668887473020799999744 No 68 >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 Probab=26.98 E-value=31 Score=14.68 Aligned_cols=75 Identities=24% Similarity=0.230 Sum_probs=47.7 Q ss_pred CCCHHHHHHHHHHCCCCCCH--HHHEECCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCH----HHHHHHHHCCCEEEEC Q ss_conf 70001222344310431100--11101154334520589999999887589472247773----4899998089889971 Q gi|254780801|r 138 MPNQTKDFVILCRQKYQLNV--EGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR----DFELAIASGATSVRIG 211 (222) Q Consensus 138 ~p~el~~l~~~i~~~~~L~i--~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~LSmGMS~----D~~~Ai~~Gst~vRiG 211 (222) .|+++.+|++.- ...-|-+ --. -|.+...|+-.|..++++.+.+..+--==|-|| |+.-||+.|-+-|-|| T Consensus 156 ~Peea~~Fv~~T-gvD~LAvaiGt~--HG~y~~~p~L~~~~l~~I~~~~~vPLVLHGgSG~p~e~i~~ai~~Gi~KiNi~ 232 (286) T 1gvf_A 156 DPQEAKRFVELT-GVDSLAVAIGTA--HGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVA 232 (286) T ss_dssp CHHHHHHHHHHH-CCSEEEECSSCC--SSCCSSCCCCCHHHHHHHHHHCCSCEEECCCTTCCHHHHHHHHHTTEEEEEEC T ss_pred CHHHHHHHHHHH-CCCEEHHHHCCC--CCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCEEEEEEC T ss_conf 999999999987-888231552665--66658998543035667652469986745899997689999997692899957 Q ss_pred HHHC Q ss_conf 1323 Q gi|254780801|r 212 SGIF 215 (222) Q Consensus 212 s~iF 215 (222) |.+. T Consensus 233 T~l~ 236 (286) T 1gvf_A 233 TELK 236 (286) T ss_dssp HHHH T ss_pred CHHH T ss_conf 2899 No 69 >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Probab=25.81 E-value=33 Score=14.55 Aligned_cols=49 Identities=27% Similarity=0.382 Sum_probs=35.2 Q ss_pred HHHHHHHHHHH---HHCCCCEECCC---CCHHHHHHHHHCCCEEEECHHHCCCCC Q ss_conf 05899999998---87589472247---773489999808988997113238999 Q gi|254780801|r 171 KPHFYLLSEIA---RECKLTKLSMG---MTRDFELAIASGATSVRIGSGIFGERP 219 (222) Q Consensus 171 ~~~F~~l~~l~---~~~~~~~LSmG---MS~D~~~Ai~~Gst~vRiGs~iFG~R~ 219 (222) .+.+....+.+ ++.+.+.++-| -|+|.--|+.+||..|=+|+.+=|.-. T Consensus 229 ~Pq~sav~~~a~~~~~~~v~iIADGGi~~~GDi~KAla~GAd~VMlGs~lAg~~E 283 (400) T 3ffs_A 229 VPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEE 283 (400) T ss_dssp CCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEECGGGTTBTT T ss_pred CCHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCC T ss_conf 4479999999999986599789537857687399998718735333115304523 No 70 >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* Probab=25.08 E-value=34 Score=14.46 Aligned_cols=97 Identities=14% Similarity=0.259 Sum_probs=60.0 Q ss_pred EEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC--CCCCHHHHEECCCCCCCCHHHHHHH-HHHHHHCCCCEECCCCC-- Q ss_conf 036889700466563465700012223443104--3110011101154334520589999-99988758947224777-- Q gi|254780801|r 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVEGLMCIPPAMGNPKPHFYLL-SEIARECKLTKLSMGMT-- 194 (222) Q Consensus 120 ~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~--~~L~i~GLMti~p~~~d~~~~F~~l-~~l~~~~~~~~LSmGMS-- 194 (222) -++++.++.+ +....|+..++..+++..+.+. .-+.+.+-...++........+..+ ..+++....+.+.-|+= T Consensus 210 ~~~~~~~~~~-d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~ 288 (340) T 3gr7_A 210 GPLFVRISAS-DYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITS 288 (340) T ss_dssp SCEEEEEESC-CCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESSCCC T ss_pred CCCCEEECCC-CCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCC T ss_conf 8761020344-445898878999999999986475536432240126656778863137999999974986899727599 Q ss_pred -HHHHHHHHHC-CCEEEECHHHCCC Q ss_conf -3489999808-9889971132389 Q gi|254780801|r 195 -RDFELAIASG-ATSVRIGSGIFGE 217 (222) Q Consensus 195 -~D~~~Ai~~G-st~vRiGs~iFG~ 217 (222) .+-+.+|++| +.+|=+|+.+.-. T Consensus 289 ~~~ae~~l~~g~aD~V~~gR~~iad 313 (340) T 3gr7_A 289 GWQAEEILQNGRADLVFLGRELLRN 313 (340) T ss_dssp HHHHHHHHHTTSCSEEEECHHHHHC T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHC T ss_conf 9999999987994135878999879 No 71 >2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A {Archaeoglobus fulgidus} Probab=24.80 E-value=23 Score=15.63 Aligned_cols=21 Identities=19% Similarity=0.055 Sum_probs=8.3 Q ss_pred CCCEEEECCCCCCHHHHHCCC Q ss_conf 873023024432001320111 Q gi|254780801|r 73 DVQLRFIGSLQSNKVSEIVSL 93 (222) Q Consensus 73 ~i~wHfIG~LQsNKvk~i~~~ 93 (222) |+++.++-..+.++++-|+.+ T Consensus 77 DiE~~~~~~~~~~~~~vI~S~ 97 (196) T 2ox1_A 77 DLESDLPDSAFDFNCRIIESY 97 (196) T ss_dssp EEETTSCGGGCCCSSEEEEEE T ss_pred EEHHHHHHHHHHCCCEEEEEE T ss_conf 512445666643598899987 No 72 >1qwl_A KATA catalase; beta barrel, azide complex, oxyferryl complex, oxidoreductase; HET: HEM; 1.60A {Helicobacter pylori} SCOP: e.5.1.1 PDB: 1qwm_A* 2a9e_A* 2iqf_A* Probab=24.22 E-value=35 Score=14.35 Aligned_cols=60 Identities=12% Similarity=0.027 Sum_probs=35.9 Q ss_pred HHHHHHHHHHHHC-CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCC Q ss_conf 0134433333311-4303688970046656346570001222344310431100111011543 Q gi|254780801|r 105 TASLLSLEMIKQS-RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA 166 (222) Q Consensus 105 ~a~~L~~~~~~~~-~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~ 166 (222) +.+.|-.+.++.. ..-.+.+|+-..++..+..+.+.+.-..+.+- ..|-+. .|-|++... T Consensus 242 l~~DL~~~i~~G~~~~w~l~vQl~~~~da~~~~~d~~D~TkvWpe~-~~P~i~-VG~LtLnrn 302 (505) T 1qwl_A 242 NQRDLFDAIARGDYPKWKLSIQVMPEEDAKKYRFHPFDVTKIWYTQ-DYPLME-VGIVELNKN 302 (505) T ss_dssp HHHHHHHHHHTTCCCEEEEEEEEEEGGGTTTCSSCTTCTTCCCCTT-TSCCEE-EEEEEEEEC T ss_pred HHHHHHHHHHCCCCCEEEEEEEECCHHHHHHCCCCCCCCCCCCCCC-CCCCEE-EEEEEECCC T ss_conf 7899999997489973689999506356752798988888408845-675078-679986678 No 73 >3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein structure initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Probab=24.00 E-value=13 Score=17.17 Aligned_cols=44 Identities=25% Similarity=0.281 Sum_probs=26.0 Q ss_pred HHCEEEEECCCCCHHHHHHHHHCCC---------CCCCCCCCHHHHHHHHCCC Q ss_conf 4418998718999999999997298---------1000121000111100000 Q gi|254780801|r 26 DSVSLVAVSKMVDSKKIRVALSCGQ---------VIFAENKLQEAKKKWIPLR 69 (222) Q Consensus 26 ~~v~LiaVtK~~~~e~I~~~~~~G~---------~~fGENrvQE~~~K~~~l~ 69 (222) +-=.++.|+|..+.++|+.||.-=- ..=.|.+-+|..+.++.|. T Consensus 29 DyY~iLGV~~~AS~~EIKkAYRkLA~k~HPDkn~~~~AeekFkeI~eAYevLs 81 (329) T 3lz8_A 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLK 81 (329) T ss_dssp ----------------------------------------------------- T ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC T ss_conf 77898099999799999999999999868898979469999999999997210 No 74 >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Probab=23.98 E-value=35 Score=14.32 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=38.0 Q ss_pred HHHHHHHHHHH---HHCCCCEECCC---CCHHHHHHHHHCCCEEEECHHHCCCCCC Q ss_conf 05899999998---87589472247---7734899998089889971132389999 Q gi|254780801|r 171 KPHFYLLSEIA---RECKLTKLSMG---MTRDFELAIASGATSVRIGSGIFGERPC 220 (222) Q Consensus 171 ~~~F~~l~~l~---~~~~~~~LSmG---MS~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222) .+.|....+.+ +..+.+.++.| -|+|.--|+.+||+.|=+|+.+=|.-.. T Consensus 341 ~pq~sai~~~a~~~~~~~v~iIADGGi~~~GDi~KAla~GAd~VMlGs~~Agt~Es 396 (514) T 1jcn_A 341 RPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEA 396 (514) T ss_dssp CCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTSTTS T ss_pred CCHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHCCCCEEEECCHHCCCCCC T ss_conf 85899999999999975992894688053467999987189889967033157668 No 75 >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Probab=23.60 E-value=36 Score=14.27 Aligned_cols=81 Identities=17% Similarity=0.122 Sum_probs=50.0 Q ss_pred CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCC---HHHHHCCCCHH-CCCCCCCCHHHHHHHH Q ss_conf 9999999999729810001210001111000001258730230244320---01320111000-0122222001344333 Q gi|254780801|r 37 VDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN---KVSEIVSLFDV-IETVSREKTASLLSLE 112 (222) Q Consensus 37 ~~~e~I~~~~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsN---Kvk~i~~~~~~-Ihsvds~~~a~~L~~~ 112 (222) ...+++-.-+-+...++|.+|++-+.++..++.. +++++++=.--.+ +....+..+|+ |-+.|+.+....|+.. T Consensus 67 v~~snL~rqf~~~~~diGk~ka~~~~~~L~~lNp--~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~ 144 (531) T 1tt5_A 67 VSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNS--DVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADV 144 (531) T ss_dssp BCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCT--TSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHH T ss_pred CCHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHCC--CCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHH T ss_conf 8977749310578454688699999999998689--99479981783125454799983498999758999999999999 Q ss_pred HHHHCCC Q ss_conf 3331143 Q gi|254780801|r 113 MIKQSRF 119 (222) Q Consensus 113 ~~~~~~~ 119 (222) +.+.+.+ T Consensus 145 c~~~~ip 151 (531) T 1tt5_A 145 LWNSQIP 151 (531) T ss_dssp HHHTTCC T ss_pred HHHCCCC T ss_conf 9981999 No 76 >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicusatcc 33223} PDB: 3krz_A* Probab=23.19 E-value=36 Score=14.22 Aligned_cols=100 Identities=15% Similarity=0.297 Sum_probs=56.8 Q ss_pred HCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCC-CC--CCHHHHEECCCCCCCCHHHHHHHHHHHHHCCCCEECCC Q ss_conf 1143036889700466563465700012223443104-31--10011101154334520589999999887589472247 Q gi|254780801|r 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQ--LNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMG 192 (222) Q Consensus 116 ~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~-~~--L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~~~~LSmG 192 (222) .+....+.+.++.. +....|..+++..+++..+... .. +...|.+..+. ...+.-.......+++....+.+.-| T Consensus 207 vg~~~~i~~R~s~~-~~~~~g~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ik~~~~~pvi~~G 284 (343) T 3kru_A 207 WPENKPIFVRVSAD-DYMEGGINIDMMVEYINMIKDKVDLIDVSSGGLLNVDI-NLYPGYQVKYAETIKKRCNIKTSAVG 284 (343) T ss_dssp SCTTSCEEEEEECC-CSSTTSCCHHHHHHHHHHHTTTCSEEEEECCCSSCCCC-CCCTTTTHHHHHHHHHHHTCEEEEES T ss_pred HCCCCCEEEECCCC-CCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCC-CCCCCCCHHHHHHHHHHCCCCEEEEC T ss_conf 41577405632510-01468898799999999988634430220255545555-77753216799999997498889989 Q ss_pred CCH---HHHHHHHHC-CCEEEECHHHCCC Q ss_conf 773---489999808-9889971132389 Q gi|254780801|r 193 MTR---DFELAIASG-ATSVRIGSGIFGE 217 (222) Q Consensus 193 MS~---D~~~Ai~~G-st~vRiGs~iFG~ 217 (222) .=. +.+.+|++| +++|=+|+.+... T Consensus 285 ~i~~~e~ae~~l~~g~~DlV~~gR~~iad 313 (343) T 3kru_A 285 LITTQELAEEILSNERADLVALGRELLRN 313 (343) T ss_dssp SCCCHHHHHHHHHTTSCSEEEESHHHHHC T ss_pred CCCCHHHHHHHHHCCCCEEHHHHHHHHHC T ss_conf 94999999999987992126863999879 No 77 >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, dahps, DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} Probab=23.11 E-value=37 Score=14.21 Aligned_cols=71 Identities=14% Similarity=0.091 Sum_probs=34.5 Q ss_pred CCCCCHHHHHHHHHHCC--CC--CCHHHHEECCCCCCC--CHHHHHHHHHHHHH---CCCCEECCCCCHHH-----HHHH Q ss_conf 65700012223443104--31--100111011543345--20589999999887---58947224777348-----9999 Q gi|254780801|r 136 GIMPNQTKDFVILCRQK--YQ--LNVEGLMCIPPAMGN--PKPHFYLLSEIARE---CKLTKLSMGMTRDF-----ELAI 201 (222) Q Consensus 136 G~~p~el~~l~~~i~~~--~~--L~i~GLMti~p~~~d--~~~~F~~l~~l~~~---~~~~~LSmGMS~D~-----~~Ai 201 (222) +.+|++....++.+.+. .+ |--||.=|..+...- .-..+..++++..- ...++ |.|-. +| ..|+ T Consensus 140 ~~s~~~~~~a~eki~~~Gn~~i~l~eRG~~t~~~~~~~~~D~~~i~~~k~~~~~pvi~D~sh-s~G~r-~~v~~la~aa~ 217 (262) T 1zco_A 140 GNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELSHLPIIVDPSH-PAGRR-SLVIPLAKAAY 217 (262) T ss_dssp TCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECSST-TTCSG-GGHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCEECCCCC-CCCCH-HHHHHHHHHHH T ss_conf 77778999999999857997899997264453444324541255499986028972117987-66667-67999999999 Q ss_pred HHCCCEE Q ss_conf 8089889 Q gi|254780801|r 202 ASGATSV 208 (222) Q Consensus 202 ~~Gst~v 208 (222) ..|+.-+ T Consensus 218 a~G~dGl 224 (262) T 1zco_A 218 AIGADGI 224 (262) T ss_dssp HTTCSEE T ss_pred HHCCCEE T ss_conf 8299989 No 78 >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain, alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* Probab=22.52 E-value=38 Score=14.14 Aligned_cols=47 Identities=23% Similarity=0.499 Sum_probs=32.4 Q ss_pred HHHHHHHHHHHCCCCEECCC--CCH-HHHHHHHHCCCEEEECHHHCCCCCC Q ss_conf 89999999887589472247--773-4899998089889971132389999 Q gi|254780801|r 173 HFYLLSEIARECKLTKLSMG--MTR-DFELAIASGATSVRIGSGIFGERPC 220 (222) Q Consensus 173 ~F~~l~~l~~~~~~~~LSmG--MS~-D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222) .....+.+++..+++.+.-| .|. |+...+..||+.|=|||++|.. |+ T Consensus 229 ~l~~v~~i~~~~~ipIIg~GGI~s~~D~~~~l~~GAd~V~ig~~~~~~-P~ 278 (311) T 1ep3_A 229 ALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFAD-PF 278 (311) T ss_dssp HHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHC-TT T ss_pred HHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCC-CH T ss_conf 789999986335677797689599999999998199999962888629-87 No 79 >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Probab=21.94 E-value=38 Score=14.11 Aligned_cols=91 Identities=18% Similarity=0.148 Sum_probs=53.4 Q ss_pred HCEEEEECCCCCHHHHHHHHHCCC------------------------CCCCCCCCHHHHHHHHCCCCCCCCCEEEECCC Q ss_conf 418998718999999999997298------------------------10001210001111000001258730230244 Q gi|254780801|r 27 SVSLVAVSKMVDSKKIRVALSCGQ------------------------VIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82 (222) Q Consensus 27 ~v~LiaVtK~~~~e~I~~~~~~G~------------------------~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~L 82 (222) .|-++.+ ..-..+....+..+|+ .++|.+|++-+.++...+....++.+|. +.+ T Consensus 38 ~VliiG~-gglG~ei~knL~l~Gv~~i~i~D~d~v~~~nl~r~~~~~~~dig~~k~~~~~~~l~~lnp~~~i~~~~-~~~ 115 (346) T 1y8q_A 38 RVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDT-EDI 115 (346) T ss_dssp EEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEEC-SCG T ss_pred CEEEECC-CHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEEE-CCC T ss_conf 7999876-88999999999995797899993999258574633216654519826799999999569996699982-566 Q ss_pred CCCHHHHHCCCCH-HCCCCCCCCHHHHHHHHHHHHCCCE Q ss_conf 3200132011100-0012222200134433333311430 Q gi|254780801|r 83 QSNKVSEIVSLFD-VIETVSREKTASLLSLEMIKQSRFL 120 (222) Q Consensus 83 QsNKvk~i~~~~~-~Ihsvds~~~a~~L~~~~~~~~~~~ 120 (222) .. .....+..+| .|-+.|+......|++.+.+.+.+. T Consensus 116 ~~-~~~~~~~~~d~vv~~~~~~~~~~~in~~~~~~~i~~ 153 (346) T 1y8q_A 116 EK-KPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKF 153 (346) T ss_dssp GG-CCHHHHTTCSEEEEESCCHHHHHHHHHHHHHTTCEE T ss_pred CC-CHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCE T ss_conf 62-779998419599980799999999999999849958 No 80 >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} Probab=20.81 E-value=41 Score=13.91 Aligned_cols=95 Identities=15% Similarity=0.073 Sum_probs=49.6 Q ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 34433333311430368897004665634657000122234431043110011101154334520589999999887589 Q gi|254780801|r 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL 186 (222) Q Consensus 107 ~~L~~~~~~~~~~~~vliQVN~~~e~~K~G~~p~el~~l~~~i~~~~~L~i~GLMti~p~~~d~~~~F~~l~~l~~~~~~ 186 (222) ..+.+.+... -+.++.+|.+ ++++..+.+.=..+-.+..+|+.+... +....+..++ ....... T Consensus 119 ~~~~~~~~~~--g~~v~~~v~t----------~~~a~~a~~~Gad~Igv~~~~~~~~~~---~~~~~~~l~~-~~~~~~i 182 (232) T 3igs_A 119 EALLARIHHH--HLLTMADCSS----------VDDGLACQRLGADIIGTTMSGYTTPDT---PEEPDLPLVK-ALHDAGC 182 (232) T ss_dssp HHHHHHHHHT--TCEEEEECCS----------HHHHHHHHHTTCSEEECTTTTSSSSSC---CSSCCHHHHH-HHHHTTC T ss_pred HHHHHHHHHC--CCEEEEECCC----------HHHHHHHHHCCCCEEEEECCCCCCCCC---CCHHHHHHHH-HHHCCCC T ss_conf 9999999754--9869998699----------999999996899889973577877876---7036788999-9733782 Q ss_pred CE-ECCCCC--HHHHHHHHHCCCEEEECHHHCCC Q ss_conf 47-224777--34899998089889971132389 Q gi|254780801|r 187 TK-LSMGMT--RDFELAIASGATSVRIGSGIFGE 217 (222) Q Consensus 187 ~~-LSmGMS--~D~~~Ai~~Gst~vRiGs~iFG~ 217 (222) +. ..-|.+ .|...|++.|+.-|=|||+|..+ T Consensus 183 pvia~GGI~t~~d~~~~~~~GAd~V~vGsAi~~~ 216 (232) T 3igs_A 183 RVIAEGRYNSPALAAEAIRYGAWAVTVGSAITRL 216 (232) T ss_dssp CEEEESCCCSHHHHHHHHHTTCSEEEECHHHHCH T ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEECHHHCCH T ss_conf 3998589899999999998699999989477590 No 81 >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, loop-6, purine biosynthesis; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Probab=20.67 E-value=41 Score=13.89 Aligned_cols=50 Identities=26% Similarity=0.408 Sum_probs=35.3 Q ss_pred HHHHHHHHHHHH---HCCCCEECCC---CCHHHHHHHHHCCCEEEECHHHCCCCCC Q ss_conf 058999999988---7589472247---7734899998089889971132389999 Q gi|254780801|r 171 KPHFYLLSEIAR---ECKLTKLSMG---MTRDFELAIASGATSVRIGSGIFGERPC 220 (222) Q Consensus 171 ~~~F~~l~~l~~---~~~~~~LSmG---MS~D~~~Ai~~Gst~vRiGs~iFG~R~~ 220 (222) .+.+....+.++ ....+.++.| -|+|.--|+.+||..|=+|+.+=|.-.. T Consensus 239 ~pq~sAv~~~~~~~~~~~vpIIADGGi~~~GDi~KAla~GAdaVMlG~~lAg~~Ea 294 (404) T 1eep_A 239 VPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKES 294 (404) T ss_dssp CCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTS T ss_pred CCHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHCCCCHHHHCHHHCCCCCC T ss_conf 11489999999986246876673688687508999997075265534143337679 No 82 >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A Probab=20.11 E-value=42 Score=13.81 Aligned_cols=71 Identities=10% Similarity=0.012 Sum_probs=38.2 Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCH-HCCCCCC-CCHHHHHHHHHHHHCCCE Q ss_conf 98100012100011110000012587302302443200132011100-0012222-200134433333311430 Q gi|254780801|r 49 GQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD-VIETVSR-EKTASLLSLEMIKQSRFL 120 (222) Q Consensus 49 G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsNKvk~i~~~~~-~Ihsvds-~~~a~~L~~~~~~~~~~~ 120 (222) +..++|++++.-+.++...+....+++.| -..+..--.......+| +|...|. ......+++.+.+.+++. T Consensus 165 ~~~diG~~K~~~a~~~l~~~np~v~I~~~-~~~i~~~~~~~~~~~~D~vi~~~d~~~~~r~~in~~c~~~~iP~ 237 (353) T 3h5n_A 165 SEDDVGKNKTEVIKRELLKRNSEISVSEI-ALNINDYTDLHKVPEADIWVVSADHPFNLINWVNKYCVRANQPY 237 (353) T ss_dssp CGGGTTSBHHHHHHHHHHHHCTTSEEEEE-ECCCCSGGGGGGSCCCSEEEECCCCSTTHHHHHHHHHHHTTCCE T ss_pred CHHHHCCCHHHHHHHHHHHHCCCCCEEEE-HHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCE T ss_conf 96683971999999999975898724531-11036332565533333431135507777777999986069988 Done!