HHSEARCH alignment of GI: 254780801 and SCOP domain: d1f3ta2

Alignment
>d1f3ta2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Trypanosoma brucei [TaxId: 5691]}
Probab=96.86  E-value=0.0076  Score=37.37  Aligned_cols=152  Identities=10%  Similarity=0.007  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECCCCC
Q ss_conf             99999999999998198964418998718999999999-997298100012100011110-0000125873023024432
Q gi|254780801|r    7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGSLQS   84 (222)
Q Consensus         7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~LQs   84 (222)
                      |+.|.++.++-....    +.|++.=..|.-|...|.. +.++|.- |-=.-..|+..-. ..++   .=+..|-|+.-+
T Consensus         2 l~~i~~~~~~~~~~~----p~v~~~YA~KaN~~~~il~~l~~~g~g-~dv~S~~El~~al~~G~~---~~~Iif~g~~k~   73 (240)
T d1f3ta2           2 LGDIVRKHETWKKCL----PRVTPFYAVKCNDDWRVLGTLAALGTG-FDCASNTEIQRVRGIGVP---PEKIIYANPCKQ   73 (240)
T ss_dssp             HHHHHHHHHHHHHHC----TTEEEEEEGGGCCCHHHHHHHHHTTCE-EEECSHHHHHHHHHTTCC---GGGEEECCSSCC
T ss_pred             HHHHHHHHHHHHHHC----CCCEEEEEECCCCCHHHHHHHHHCCCC-EEECCCHHHHHHHHCCCC---CCCEEECCCCCH
T ss_conf             789999999999878----998798875017999999999986998-684251368999983899---642465065310


Q ss_pred             CH-HHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEE------CCCCCCCCCCCCCHHHHHHHHHHCCCCCCH
Q ss_conf             00-13201110000122222001344333333114303688970------046656346570001222344310431100
Q gi|254780801|r   85 NK-VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------TGYEIQKSGIMPNQTKDFVILCRQKYQLNV  157 (222)
Q Consensus        85 NK-vk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN------~~~e~~K~G~~p~el~~l~~~i~~~~~L~i  157 (222)
                      .. ++.++..-..+.++||+...++|.+.+.    ..++.+-||      +++..+|+|+.++++.+++..+.+. ++++
T Consensus        74 ~~ei~~a~~~g~~~~~~ds~~el~~i~~~~~----~~~~~~ri~~~~~~~~~~~~~kFGi~~~~~~~~~~~~~~~-~~~l  148 (240)
T d1f3ta2          74 ISHIRYARDSGVDVMTFDCVDELEKVAKTHP----KAKMVLRISTDDSLARCRLSVKFGAKVEDCRFILEQAKKL-NIDV  148 (240)
T ss_dssp             HHHHHHHHHTTCCEEEECSHHHHHHHHHHCT----TCEEEEEBCC----------CCSCBCHHHHHHHHHHHHHT-TCEE
T ss_pred             HHHHHHHHHHCCCCEEEEEHHHHHHHHHHCC----CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCCE
T ss_conf             5779999871245324421012555555335----5564422123222245566552013378999999987333-6645


Q ss_pred             HHHEE-CCCCCCCCH
Q ss_conf             11101-154334520
Q gi|254780801|r  158 EGLMC-IPPAMGNPK  171 (222)
Q Consensus       158 ~GLMt-i~p~~~d~~  171 (222)
                      .||=+ ++....++.
T Consensus       149 ~GlH~H~GS~~~~~~  163 (240)
T d1f3ta2         149 TGVSFHVGSGSTDAS  163 (240)
T ss_dssp             EEEECCCCSCCSCTH
T ss_pred             EEEEEEHHHCCCCHH
T ss_conf             666542222026889


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: Alanine racemase-like, N-terminal domain
domain: Eukaryotic ornithine decarboxylase
species: Trypanosoma brucei [TaxId: 5691]