HHSEARCH alignment of GI: 254780801 and SCOP domain: d1hkva2

Alignment
>d1hkva2 c.1.6.1 (A:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.62  E-value=0.00037  Score=46.23  Aligned_cols=177  Identities=15%  Similarity=0.115  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHH-HHHHHHCCCCCCCCCCCHHHHHH-HHCCCCCCCCCEEEECCCCCC
Q ss_conf             9999999999998198964418998718999999-99999729810001210001111-000001258730230244320
Q gi|254780801|r    8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKK-IRVALSCGQVIFAENKLQEAKKK-WIPLRKEWDVQLRFIGSLQSN   85 (222)
Q Consensus         8 ~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~-I~~~~~~G~~~fGENrvQE~~~K-~~~l~~~~~i~wHfIG~LQsN   85 (222)
                      +.+++++++.....+   ..+++.-..|..|... ++.+.+.|. .|==--..|+..- ...++   +-+..|-|+.-+.
T Consensus         3 ~~lr~~~~~~~~af~---~~~~i~YA~KaN~~~~vl~~l~~~G~-g~dvaS~~El~~al~~G~~---~~~Ii~~gp~K~~   75 (265)
T d1hkva2           3 DDFRSRCRETAAAFG---SGANVHYAAKAFLCSEVARWISEEGL-CLDVCTGGELAVALHASFP---PERITLHGNNKSV   75 (265)
T ss_dssp             HHHHHHHHHHHHHTT---SGGGBEEEGGGSCCHHHHHHHHHHTC-EEEECSHHHHHHHHHTTCC---GGGEEECCSSCCH
T ss_pred             HHHHHHHHHHHHHCC---CCCEEEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCC---HHHHEECCCCCHH
T ss_conf             999999999998569---99869988633899999999997499-7598675159999982899---8992335521003


Q ss_pred             H-HHHHCCC-CHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEC------------CCCCCCCCCCCCHHHHH--HHHH
Q ss_conf             0-1320111-00001222220013443333331143036889700------------46656346570001222--3443
Q gi|254780801|r   86 K-VSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQKSGIMPNQTKDF--VILC  149 (222)
Q Consensus        86 K-vk~i~~~-~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~------------~~e~~K~G~~p~el~~l--~~~i  149 (222)
                      . ++.++.. ..+| ++||+...++|.+.+.+.+...+|.+.+|.            ++..+|+|+.+++...+  +..+
T Consensus        76 ~~l~~Al~~gv~~i-~vDs~~El~~i~~~~~~~~~~~~v~lr~~p~~~~~~~~~~~~g~~~skFG~~~~~~~~~~~~~~~  154 (265)
T d1hkva2          76 SELTAAVKAGVGHI-VVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAVRRV  154 (265)
T ss_dssp             HHHHHHHHHTCCCE-EECSHHHHHHHHHHHHHHTCCEEEEEEEECSEEEEETEEEECSSCCSSSSEESTTSHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             56788986385511-14542789999988652033423122333101244333110255334456523466789999999


Q ss_pred             HCCCCCCHHHHEE-CCCCCCCCHH-------HHHHHHHHHHH------CCCCEECCC
Q ss_conf             1043110011101-1543345205-------89999999887------589472247
Q gi|254780801|r  150 RQKYQLNVEGLMC-IPPAMGNPKP-------HFYLLSEIARE------CKLTKLSMG  192 (222)
Q Consensus       150 ~~~~~L~i~GLMt-i~p~~~d~~~-------~F~~l~~l~~~------~~~~~LSmG  192 (222)
                      ...+++++.||=. ++....++..       .+....++..+      ..+..|.+|
T Consensus       155 ~~~~~l~~~GlH~HvGSq~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~l~~ldiG  211 (265)
T d1hkva2         155 FATDHLRLVGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQIATVDLG  211 (265)
T ss_dssp             HHCSSEEEEEEECCCEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCEEECC
T ss_pred             HHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             861673266655541102344588999999999887767887788608886446545


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: Alanine racemase-like, N-terminal domain
domain: Diaminopimelate decarboxylase LysA
species: Mycobacterium tuberculosis [TaxId: 1773]