HHSEARCH alignment of GI: 254780801 and SCOP domain: d7odca2

Alignment
>d7odca2 c.1.6.1 (A:44-283) Eukaryotic ornithine decarboxylase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=95.98  E-value=0.04  Score=32.56  Aligned_cols=152  Identities=13%  Similarity=0.045  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHCEEEEECCCCCHHHHHH-HHHCCCCCCCCCCCHHHHHHH-HCCCCCCCCCEEEECCCCC
Q ss_conf             99999999999998198964418998718999999999-997298100012100011110-0000125873023024432
Q gi|254780801|r    7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKW-IPLRKEWDVQLRFIGSLQS   84 (222)
Q Consensus         7 l~~i~~~I~~a~~~~gR~~~~v~LiaVtK~~~~e~I~~-~~~~G~~~fGENrvQE~~~K~-~~l~~~~~i~wHfIG~LQs   84 (222)
                      |+.|.++..+--+.-   | .|++.=..|.-|...|.. +.+.|.- |==.-..|+..-. ..++   .=+..|-|+..+
T Consensus         2 l~~i~~~~~~~~~~~---p-~v~~~YA~KaN~~~~il~~l~~~G~g-~dv~S~~El~~a~~aG~~---~~~Iv~~g~~K~   73 (240)
T d7odca2           2 LGDILKKHLRWLKAL---P-RVTPFYAVKCNDSRAIVSTLAAIGTG-FDCASKTEIQLVQGLGVP---AERVIYANPCKQ   73 (240)
T ss_dssp             HHHHHHHHHHHHHHC---T-TEEEEEEGGGCCCHHHHHHHHHHTCE-EEECSHHHHHHHHHTTCC---GGGEEECCSSCC
T ss_pred             HHHHHHHHHHHHHHC---C-CCEEEEEECCCCCHHHHHHHHHCCCC-EEEECCHHHHHHHHCCCC---CCCEEECCCCCC
T ss_conf             789999999999868---9-98798885238989999999983998-176242689999844999---430374277520


Q ss_pred             C-HHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEC------CCCCCCCCCCCCHHHHHHHHHHCCCCCCH
Q ss_conf             0-0132011100001222220013443333331143036889700------46656346570001222344310431100
Q gi|254780801|r   85 N-KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT------GYEIQKSGIMPNQTKDFVILCRQKYQLNV  157 (222)
Q Consensus        85 N-Kvk~i~~~~~~Ihsvds~~~a~~L~~~~~~~~~~~~vliQVN~------~~e~~K~G~~p~el~~l~~~i~~~~~L~i  157 (222)
                      . =++.++..--.+..+|+....+.+.+..    ...++.+.+|+      ++..+|+|+.++++..+++.+.. .++++
T Consensus        74 ~~~l~~a~~~g~~~~~~ds~~el~~i~~~~----~~~~v~~ri~~~~~~~~~~~~~kfG~~~~~~~~~~~~~~~-~~l~l  148 (240)
T d7odca2          74 VSQIKYAASNGVQMMTFDSEIELMKVARAH----PKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAKE-LNIDV  148 (240)
T ss_dssp             HHHHHHHHHTTCCEEEECSHHHHHHHHHHC----TTCEEEEEBCC-----------CCCBCHHHHHHHHHHHHH-TTCEE
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHC----CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCEE
T ss_conf             678999988633342210277889998746----6566542234455544367676653438999999998640-69468


Q ss_pred             HHHEE-CCCCCCCCH
Q ss_conf             11101-154334520
Q gi|254780801|r  158 EGLMC-IPPAMGNPK  171 (222)
Q Consensus       158 ~GLMt-i~p~~~d~~  171 (222)
                      .||=+ ++....++.
T Consensus       149 ~GlH~H~GSq~~~~~  163 (240)
T d7odca2         149 IGVSFHVGSGCTDPD  163 (240)
T ss_dssp             EEEECCCCSSCCCTH
T ss_pred             EEECCCCCCCCCCHH
T ss_conf             761100010343288


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLP-binding barrel
family: Alanine racemase-like, N-terminal domain
domain: Eukaryotic ornithine decarboxylase
species: Mouse (Mus musculus) [TaxId: 10090]