BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780801|ref|YP_003065214.1| hypothetical protein
CLIBASIA_03460 [Candidatus Liberibacter asiaticus str. psy62]
(222 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780801|ref|YP_003065214.1| hypothetical protein CLIBASIA_03460 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040478|gb|ACT57274.1| hypothetical protein CLIBASIA_03460 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 222
Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust.
Identities = 222/222 (100%), Positives = 222/222 (100%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE
Sbjct: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL
Sbjct: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI
Sbjct: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT
Sbjct: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
>gi|315122023|ref|YP_004062512.1| hypothetical protein CKC_01365 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495425|gb|ADR52024.1| hypothetical protein CKC_01365 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 222
Score = 347 bits (889), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 169/221 (76%), Positives = 192/221 (86%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL +KLQ FKQKI +LAKR K SVSLVAVSKMVD + I+ ALSCGQ+IFAE+KLQE
Sbjct: 1 MSLEHKLQAFKQKIAYHEMLAKRLKGSVSLVAVSKMVDIQTIQSALSCGQIIFAESKLQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+KKW LRKEWD+QLRFIGSLQSNK+SEIVS FDVIETV REK ASLLS+EM KQ FL
Sbjct: 61 AQKKWSFLRKEWDIQLRFIGSLQSNKISEIVSFFDVIETVDREKIASLLSIEMEKQKCFL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
P+YIQVNTG E QKSG+MPN+TKDF++LCRQKY+LNVEGLMCIPP NP PHF LLS+I
Sbjct: 121 PIYIQVNTGCEKQKSGVMPNETKDFIVLCRQKYRLNVEGLMCIPPVTSNPGPHFCLLSKI 180
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
A+EC++TKLSMGMT+D++LAIA GATSVRIGSGIFGER Q
Sbjct: 181 AKECEITKLSMGMTKDYDLAIAFGATSVRIGSGIFGERSYQ 221
>gi|33326392|gb|AAQ08613.1| hypothetical protein [Agrobacterium vitis]
Length = 219
Score = 239 bits (610), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 118/219 (53%), Positives = 155/219 (70%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ +L + +I +A A R ++V+LVAVSK D+ IR + GQ +F EN++QE
Sbjct: 1 MTIEERLDEVRTRIAAAAEDADRNPEAVTLVAVSKTFDADAIRPVILHGQRVFGENRVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E ++L IG LQSNK SE V+LFDVIETV REK A L+ EM KQ R
Sbjct: 61 SQGKWPELKAETPGIELYLIGPLQSNKASEAVALFDVIETVDREKIARALAEEMAKQGRL 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L +Y+QVNTG E QK+GI P +TK FV+LCR + L +EGLMCIPPA NP PHF LL++
Sbjct: 121 LRLYVQVNTGLEPQKAGIAPQETKAFVVLCRSELGLEIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A EC +++LSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LAGECGVSRLSMGMSGDYETAIAFGATSVRVGSAIFGHR 219
>gi|222150238|ref|YP_002551195.1| hypothetical protein Avi_4380 [Agrobacterium vitis S4]
gi|221737220|gb|ACM38183.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 219
Score = 238 bits (607), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 117/219 (53%), Positives = 156/219 (71%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ +L + +I +A A R ++V+LVAVSK D++ IR + GQ +F EN++QE
Sbjct: 1 MTIEERLDEVRTRIAAAAQEADRTPEAVTLVAVSKTFDAEAIRPVILHGQRVFGENRVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E +++L IG LQSNK +E V+LFDVIETV REK A L+ EM KQ R
Sbjct: 61 SQGKWPELKAETPEIELHLIGPLQSNKAAEAVALFDVIETVDREKIARALAEEMAKQGRQ 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L +Y+QVNTG E QK+GI P +TK FV LCR + L +EGLMCIPPA NP PHF LL++
Sbjct: 121 LRLYVQVNTGLEPQKAGIAPQETKAFVDLCRSELGLEIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A EC +++LSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LAGECGVSRLSMGMSGDYETAIAFGATSVRVGSAIFGHR 219
>gi|15967083|ref|NP_387436.1| hypothetical protein SMc02812 [Sinorhizobium meliloti 1021]
gi|307302545|ref|ZP_07582302.1| alanine racemase domain protein [Sinorhizobium meliloti BL225C]
gi|307316124|ref|ZP_07595568.1| alanine racemase domain protein [Sinorhizobium meliloti AK83]
gi|15076356|emb|CAC47909.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|306897964|gb|EFN28706.1| alanine racemase domain protein [Sinorhizobium meliloti AK83]
gi|306903215|gb|EFN33805.1| alanine racemase domain protein [Sinorhizobium meliloti BL225C]
Length = 219
Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 152/219 (69%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +L +I S A RP+++VSLVAVSK D++ IR + GQ +F EN++QE
Sbjct: 1 MEVEERLNEVLSRIRASEKSANRPENTVSLVAVSKTFDAETIRPVIEAGQRVFGENRVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW L++E D++L IG LQSNK ++ V+LFDVIET+ REK A ++ EM +Q R
Sbjct: 61 AQAKWPALKRETPDIELHLIGPLQSNKAADAVALFDVIETIDREKIARAVAAEMKRQGRD 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ +Y+QVNTG E QK+GI P FV LCR + LN+EGLMCIPP NP PHF LL++
Sbjct: 121 IRLYVQVNTGLEPQKAGIAPEDAAAFVALCRDELALNIEGLMCIPPFDENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C L++LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 181 LAGQCGLSRLSMGMSGDFETAIAFGATGVRVGSAIFGAR 219
>gi|116254455|ref|YP_770293.1| racemase [Rhizobium leguminosarum bv. viciae 3841]
gi|115259103|emb|CAK10214.1| putative racemase [Rhizobium leguminosarum bv. viciae 3841]
Length = 219
Score = 235 bits (600), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 152/219 (69%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I A RP SV LVAVSK ++ IR A+ GQ +F EN++QE
Sbjct: 1 MELQERLNDVRSRIAAGERAAGRPAGSVQLVAVSKTFEADAIRPAIEAGQRVFGENRVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E D++L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q++
Sbjct: 61 SQGKWPALKAEHQDIKLHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQAKA 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L +Y+QVNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 LRLYVQVNTGLEPQKAGIAPDDTPAFVALCRDELGLSIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LALKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGTR 219
>gi|190893971|ref|YP_001980513.1| alanine racemase [Rhizobium etli CIAT 652]
gi|190699250|gb|ACE93335.1| putative alanine racemase protein [Rhizobium etli CIAT 652]
Length = 219
Score = 235 bits (600), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 118/219 (53%), Positives = 152/219 (69%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I A RP SV LVAVSK +++ IR A+ GQ IF EN++QE
Sbjct: 1 MELQERLNDVRSRIAAGERAAGRPAGSVRLVAVSKTFEAEAIRPAIDAGQRIFGENRVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E D++L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q R
Sbjct: 61 SQGKWPVLKAENPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQDRT 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y+QVNTG E QK+GI P++T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 PRLYVQVNTGLEPQKAGIAPDETPAFVTLCRDELGLSIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+E AIA GATSVRIGS IFG R
Sbjct: 181 LASKCGVEKLSMGMSGDYETAIAFGATSVRIGSAIFGAR 219
>gi|86359693|ref|YP_471585.1| hypothetical protein RHE_CH04115 [Rhizobium etli CFN 42]
gi|86283795|gb|ABC92858.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 219
Score = 234 bits (596), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 117/219 (53%), Positives = 151/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I A RP SV LVAVSK +++ IR A+ GQ IF EN++QE
Sbjct: 1 MDLQERLNDVRSRIAAGERQAGRPAGSVQLVAVSKTFEAEAIRPAIDAGQRIFGENRVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E D++L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q R
Sbjct: 61 SQGKWPVLKAENPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQDRT 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y+QVNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 PRLYVQVNTGLEPQKAGIAPDDTPAFVTLCRDELGLSIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LASKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGAR 219
>gi|218510282|ref|ZP_03508160.1| putative alanine racemase protein [Rhizobium etli Brasil 5]
Length = 219
Score = 234 bits (596), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 117/219 (53%), Positives = 151/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + KI A RP SV LVAVSK +++ IR A+ GQ +F EN++QE
Sbjct: 1 MELQERLNDVRSKIAAGERAAGRPAGSVRLVAVSKTFEAEAIRPAIDAGQRVFGENRVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E D++L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q R
Sbjct: 61 SQGKWPVLKAENPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQDRT 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y+QVNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 PRLYVQVNTGLEPQKAGIAPDDTPAFVTLCRGELGLSIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LASKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGAR 219
>gi|218461353|ref|ZP_03501444.1| putative alanine racemase protein [Rhizobium etli Kim 5]
Length = 219
Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 153/219 (69%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I + A RP SV LVAVSK +++ IR A+ GQ +F EN++QE
Sbjct: 1 MELQERLNDVRSRIAAAERAAGRPAGSVRLVAVSKTFEAEAIRPAIEAGQRVFGENRVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E+ D++L IG LQSNK ++ V+LFDVIE+V REK A L+ EM +Q +
Sbjct: 61 SQGKWPALKAEYPDIELHLIGPLQSNKAADAVALFDVIESVDREKIARALAEEMKRQGKT 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y++VNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 PRLYVEVNTGLEPQKAGIAPDDTPAFVSLCRDELGLSIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LASKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGAR 219
>gi|222087921|ref|YP_002546459.1| hypothetical protein Arad_4934 [Agrobacterium radiobacter K84]
gi|221725369|gb|ACM28525.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 219
Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 114/219 (52%), Positives = 153/219 (69%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + I + A RP +V LVAVSK D+ IR A+S GQ +F EN++QE
Sbjct: 1 MELQERLNEVRSHIAVAERQAGRPGGAVQLVAVSKTFDADAIRPAISAGQRVFGENRVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E D++L IG LQSNK ++ V+LFDVIETV REK A L+ E+ +Q +
Sbjct: 61 SQGKWPALKAETPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALADEIKRQGKA 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ +Y+QVNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 IRLYVQVNTGLEPQKAGIAPDDTVAFVDLCRNELGLSIEGLMCIPPADENPGPHFGLLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR+ + KLSMGM+ D+E+A+A GATSVR+GS IFG R
Sbjct: 181 LARKAGVDKLSMGMSSDYEIAVAFGATSVRVGSAIFGAR 219
>gi|325294117|ref|YP_004279981.1| alanine racemase protein [Agrobacterium sp. H13-3]
gi|325061970|gb|ADY65661.1| putative alanine racemase protein [Agrobacterium sp. H13-3]
Length = 219
Score = 231 bits (588), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 153/219 (69%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +L+ +Q+I +A + R VSLVAVSK D+++I+ + GQ +F EN++QE
Sbjct: 1 MEIEARLEDVRQRIAETAEKSGRKATDVSLVAVSKTFDAQEIQPVIDSGQRVFGENRVQE 60
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW L+ K ++L IG LQSNK ++ V+LFDV+++V REK A LS E +KQ R
Sbjct: 61 AQGKWPALKEKTSGIELHLIGPLQSNKAADAVALFDVVQSVDREKIARALSEECVKQGRS 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L Y+QVNTG E QK+GI P +T FV CR + +L+VEGLMCIPPA NP PHF LL++
Sbjct: 121 LRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLSVEGLMCIPPADENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR+C L KLSMGM+ DFE AI GATSVR+GS IFG R
Sbjct: 181 LARQCGLEKLSMGMSGDFETAIEFGATSVRVGSAIFGAR 219
>gi|90421008|ref|ZP_01228912.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90334786|gb|EAS48562.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 224
Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/218 (53%), Positives = 148/218 (67%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L +L+ +Q + ++ A R D+V+LVAVSK D+ I L GQ IF ENK+QEA
Sbjct: 4 ALLERLETVRQAVAQASREAGRADDAVALVAVSKTHDADTILPVLEAGQRIFGENKVQEA 63
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K KW LR+ + +V+LR IG LQSNK E V+LFDVIE+V REK A L+ EM KQ R
Sbjct: 64 KAKWPALRERFPEVELRLIGPLQSNKAGEAVALFDVIESVDREKIAKELAEEMAKQDRHP 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+Y+QVNTG E QK+GI P + FV CR ++ L +EGLMCIPPA P PHF LL +I
Sbjct: 124 RLYVQVNTGEEDQKAGIAPREAVAFVERCRSEHGLRIEGLMCIPPAEEKPGPHFALLEKI 183
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A E + KLSMGM+ D+E+AI GATSVR+GS IFG R
Sbjct: 184 AAEAGVEKLSMGMSGDYEIAIGFGATSVRVGSAIFGAR 221
>gi|241206932|ref|YP_002978028.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240860822|gb|ACS58489.1| alanine racemase domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 219
Score = 230 bits (586), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 149/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I + A RP SV LVAVSK ++ IR A+ GQ +F EN++QE
Sbjct: 1 MELQERLDDVRSRIAAAEREAGRPAGSVQLVAVSKTFEADAIRPAIEAGQRVFGENRVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E D+ L IG LQSNK ++ V LFDVIETV REK A L+ EM +Q +
Sbjct: 61 SQGKWPALKAEHQDIALHLIGPLQSNKAADAVVLFDVIETVDREKIARALAEEMRRQGKA 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L +Y+QVNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 LRLYVQVNTGLEPQKAGIAPDDTPAFVALCRDELGLSIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+ AIA GATSVR+GS IFG R
Sbjct: 181 LALKCGVEKLSMGMSGDYGTAIAFGATSVRVGSAIFGTR 219
>gi|209551494|ref|YP_002283411.1| alanine racemase domain protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537250|gb|ACI57185.1| alanine racemase domain protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 219
Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/219 (52%), Positives = 150/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I A RP SV LVAVSK +++ IR A+ GQ +F EN++QE
Sbjct: 1 MELQERLNDVRSRIAAGERQAARPAGSVELVAVSKTFEAEAIRPAIDAGQRVFGENRVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E D+ L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q +
Sbjct: 61 SQGKWPALKAERPDIVLHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQDKR 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y+QVNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 PRLYVQVNTGLEPQKAGIAPDDTPAFVSLCRDELGLSIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LALKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGAR 219
>gi|306844788|ref|ZP_07477373.1| conserved hypothetical protein [Brucella sp. BO1]
gi|306274960|gb|EFM56730.1| conserved hypothetical protein [Brucella sp. BO1]
Length = 226
Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 148/217 (68%), Gaps = 1/217 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++QEA+ KW
Sbjct: 8 LNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQEAQGKWP 67
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ W ++L IG LQSNK ++ ++LFDVIETV REK A+ L+ E+ KQ + +Y+Q
Sbjct: 68 ALREAWAGIELHLIGPLQSNKAADAIALFDVIETVDREKIAAALATEIRKQGKSPKLYVQ 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL ++ARE
Sbjct: 128 VNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLEKLAREAH 187
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ KLSMGM+ D+E AI GATSVR+GS IFG R T
Sbjct: 188 VEKLSMGMSGDYETAIGFGATSVRVGSAIFGGRAYST 224
>gi|23502661|ref|NP_698788.1| hypothetical protein BR1808 [Brucella suis 1330]
gi|161619728|ref|YP_001593615.1| hypothetical protein BCAN_A1846 [Brucella canis ATCC 23365]
gi|163845385|ref|YP_001623040.1| hypothetical protein BSUIS_B1285 [Brucella suis ATCC 23445]
gi|254703574|ref|ZP_05165402.1| hypothetical protein Bsuib36_06554 [Brucella suis bv. 3 str. 686]
gi|260568879|ref|ZP_05839347.1| alanine racemase domain-containing protein [Brucella suis bv. 4
str. 40]
gi|261754207|ref|ZP_05997916.1| alanine racemase domain-containing protein [Brucella suis bv. 3
str. 686]
gi|23348670|gb|AAN30703.1| conserved hypothetical protein TIGR00044 [Brucella suis 1330]
gi|161336539|gb|ABX62844.1| conserved hypothetical protein [Brucella canis ATCC 23365]
gi|163676108|gb|ABY40218.1| conserved hypothetical protein [Brucella suis ATCC 23445]
gi|260154263|gb|EEW89345.1| alanine racemase domain-containing protein [Brucella suis bv. 4
str. 40]
gi|261743960|gb|EEY31886.1| alanine racemase domain-containing protein [Brucella suis bv. 3
str. 686]
Length = 226
Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/213 (53%), Positives = 148/213 (69%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++QEA+ KW
Sbjct: 8 LNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQEAQGKWP 67
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ W ++L IG LQSNKV++ V+LFDVIETV REK A+ L+ E+ KQ + +Y+Q
Sbjct: 68 ALREAWASIELHLIGPLQSNKVADAVALFDVIETVDREKIAAALASEIRKQGKSPKLYVQ 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL ++ARE
Sbjct: 128 VNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLEKLAREAH 187
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ KLSMGM+ D+E AI GATSVR+G+ IFG R
Sbjct: 188 VEKLSMGMSGDYETAIGFGATSVRVGAAIFGGR 220
>gi|254719796|ref|ZP_05181607.1| hypothetical protein Bru83_09663 [Brucella sp. 83/13]
gi|265984815|ref|ZP_06097550.1| alanine racemase domain-containing protein [Brucella sp. 83/13]
gi|306839492|ref|ZP_07472300.1| conserved hypothetical protein [Brucella sp. NF 2653]
gi|264663407|gb|EEZ33668.1| alanine racemase domain-containing protein [Brucella sp. 83/13]
gi|306405437|gb|EFM61708.1| conserved hypothetical protein [Brucella sp. NF 2653]
Length = 226
Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/213 (53%), Positives = 147/213 (69%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++QEA+ KW
Sbjct: 8 LNAVKAVIARAEKEARRKNGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQEAQGKWP 67
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ W ++L IG LQSNK ++ V+LFDVIETV REK A+ L+ E+ KQ + +Y+Q
Sbjct: 68 ALREAWAGIELHLIGPLQSNKAADAVALFDVIETVDREKIAAALASEIRKQGKSPKLYVQ 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL ++ARE
Sbjct: 128 VNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLEKLAREAH 187
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ KLSMGM+ D+E AI GATSVR+GS IFG R
Sbjct: 188 VEKLSMGMSGDYETAIGFGATSVRVGSAIFGGR 220
>gi|306841587|ref|ZP_07474284.1| conserved hypothetical protein [Brucella sp. BO2]
gi|306288333|gb|EFM59696.1| conserved hypothetical protein [Brucella sp. BO2]
Length = 226
Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 114/213 (53%), Positives = 147/213 (69%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++QEA+ KW
Sbjct: 8 LNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQEAQGKWP 67
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ W ++L IG LQSNK ++ V+LFDVIETV REK A+ L+ E+ KQ + +Y+Q
Sbjct: 68 ALREAWAGIELHLIGPLQSNKAADAVALFDVIETVDREKIAAALASEIRKQGKSPKLYVQ 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL ++ARE
Sbjct: 128 VNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLEKLAREAH 187
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ KLSMGM+ D+E AI GATSVR+GS IFG R
Sbjct: 188 VEKLSMGMSGDYETAIGFGATSVRVGSAIFGGR 220
>gi|150398389|ref|YP_001328856.1| alanine racemase domain-containing protein [Sinorhizobium medicae
WSM419]
gi|150029904|gb|ABR62021.1| alanine racemase domain protein [Sinorhizobium medicae WSM419]
Length = 219
Score = 228 bits (582), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 150/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +L +I S A R +++VSLVAVSK D+ I + GQ +F EN++QE
Sbjct: 1 MEVEERLNDVLSRIRKSEKSANRSENAVSLVAVSKTFDADSIGPVIDAGQRVFGENRVQE 60
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW L+ + D++L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q R
Sbjct: 61 AQSKWPALKGRTPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALAAEMKRQERE 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ +Y+QVNTG E QK+GI P T FV CR++ L++EGLMCIPP NP PHF LL++
Sbjct: 121 IRLYVQVNTGLEPQKAGIAPEGTGAFVTFCREELGLDIEGLMCIPPLDENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C L++LSMGM+ DFE AIA GATSVR+GS IFG R
Sbjct: 181 LASQCGLSRLSMGMSGDFETAIAFGATSVRVGSAIFGAR 219
>gi|218672950|ref|ZP_03522619.1| hypothetical protein RetlG_15628 [Rhizobium etli GR56]
Length = 219
Score = 228 bits (582), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 116/219 (52%), Positives = 149/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I A RP SV LVAVSK +++ IR A+ G IF EN++QE
Sbjct: 1 MELQERLNDVRSRIAAGERQAGRPAGSVRLVAVSKTFEAEAIRPAIEAGLRIFGENRVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E D++L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q R
Sbjct: 61 SQGKWPALKAEHPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQDRR 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y+QVNTG E QK+GI P+ T FV LCR + L +EGLMCIPPA NP PHF LL++
Sbjct: 121 PRLYVQVNTGLEPQKAGIAPDDTPAFVSLCRGELGLLIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LASKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGAR 219
>gi|239832888|ref|ZP_04681217.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
gi|239825155|gb|EEQ96723.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
Length = 250
Score = 228 bits (581), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 113/213 (53%), Positives = 149/213 (69%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K I ++ A+R K SV+LVAVSK D+ +IR L GQ +F EN++QEA+ KW
Sbjct: 32 LNTVKAAIASAEKEARREKGSVTLVAVSKTFDADEIRPVLDAGQRVFGENRVQEAQGKWP 91
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR ++ ++L IG LQSNK ++ V+LFDVIETV REK A+ L+ E+ KQ++ +Y+Q
Sbjct: 92 QLRGDYSGIELHLIGPLQSNKAADAVALFDVIETVDREKIAAALAAEIKKQNKTPKLYVQ 151
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL ++ARE
Sbjct: 152 VNTGLEEQKAGIAPKEAVAFVERCRKEHGLAIEGLMCIPPAGENPGPHFALLEKLAREAG 211
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ KLSMGM+ D+E AI GATSVR+GS IFG R
Sbjct: 212 VEKLSMGMSGDYETAIGFGATSVRVGSAIFGGR 244
>gi|225628362|ref|ZP_03786396.1| conserved hypothetical protein [Brucella ceti str. Cudo]
gi|254700452|ref|ZP_05162280.1| hypothetical protein Bsuib55_06309 [Brucella suis bv. 5 str. 513]
gi|254708339|ref|ZP_05170167.1| hypothetical protein BpinM_15650 [Brucella pinnipedialis
M163/99/10]
gi|254708808|ref|ZP_05170619.1| hypothetical protein BpinB_00826 [Brucella pinnipedialis B2/94]
gi|254714650|ref|ZP_05176461.1| hypothetical protein BcetM6_15197 [Brucella ceti M644/93/1]
gi|254717548|ref|ZP_05179359.1| hypothetical protein BcetM_14326 [Brucella ceti M13/05/1]
gi|256030334|ref|ZP_05443948.1| hypothetical protein BpinM2_06746 [Brucella pinnipedialis
M292/94/1]
gi|256160505|ref|ZP_05458194.1| hypothetical protein BcetM4_16004 [Brucella ceti M490/95/1]
gi|256255711|ref|ZP_05461247.1| hypothetical protein BcetB_15833 [Brucella ceti B1/94]
gi|256370212|ref|YP_003107723.1| alanine racemase [Brucella microti CCM 4915]
gi|260168008|ref|ZP_05754819.1| alanine racemase [Brucella sp. F5/99]
gi|261219382|ref|ZP_05933663.1| alanine racemase domain-containing protein [Brucella ceti M13/05/1]
gi|261222922|ref|ZP_05937203.1| alanine racemase domain-containing protein [Brucella ceti B1/94]
gi|261315839|ref|ZP_05955036.1| alanine racemase domain-containing protein [Brucella pinnipedialis
M163/99/10]
gi|261316301|ref|ZP_05955498.1| alanine racemase domain-containing protein [Brucella pinnipedialis
B2/94]
gi|261322444|ref|ZP_05961641.1| alanine racemase domain-containing protein [Brucella ceti
M644/93/1]
gi|261750953|ref|ZP_05994662.1| alanine racemase domain-containing protein [Brucella suis bv. 5
str. 513]
gi|261757453|ref|ZP_06001162.1| alanine racemase domain-containing protein [Brucella sp. F5/99]
gi|265987368|ref|ZP_06099925.1| alanine racemase domain-containing protein [Brucella pinnipedialis
M292/94/1]
gi|265998881|ref|ZP_06111438.1| alanine racemase domain-containing protein [Brucella ceti
M490/95/1]
gi|294851047|ref|ZP_06791723.1| YggS family pyridoxal phosphate enzyme [Brucella sp. NVSL 07-0026]
gi|225616208|gb|EEH13256.1| conserved hypothetical protein [Brucella ceti str. Cudo]
gi|256000375|gb|ACU48774.1| alanine racemase [Brucella microti CCM 4915]
gi|260921506|gb|EEX88159.1| alanine racemase domain-containing protein [Brucella ceti B1/94]
gi|260924471|gb|EEX91039.1| alanine racemase domain-containing protein [Brucella ceti M13/05/1]
gi|261295134|gb|EEX98630.1| alanine racemase domain-containing protein [Brucella ceti
M644/93/1]
gi|261295524|gb|EEX99020.1| alanine racemase domain-containing protein [Brucella pinnipedialis
B2/94]
gi|261304865|gb|EEY08362.1| alanine racemase domain-containing protein [Brucella pinnipedialis
M163/99/10]
gi|261737437|gb|EEY25433.1| alanine racemase domain-containing protein [Brucella sp. F5/99]
gi|261740706|gb|EEY28632.1| alanine racemase domain-containing protein [Brucella suis bv. 5
str. 513]
gi|262553570|gb|EEZ09339.1| alanine racemase domain-containing protein [Brucella ceti
M490/95/1]
gi|264659565|gb|EEZ29826.1| alanine racemase domain-containing protein [Brucella pinnipedialis
M292/94/1]
gi|294821690|gb|EFG38686.1| YggS family pyridoxal phosphate enzyme [Brucella sp. NVSL 07-0026]
Length = 226
Score = 228 bits (580), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 113/213 (53%), Positives = 147/213 (69%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++QEA+ KW
Sbjct: 8 LNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQEAQGKWP 67
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ W ++L IG LQSNK ++ V+LFDVIETV REK A+ L+ E+ KQ + +Y+Q
Sbjct: 68 ALREAWASIELHLIGPLQSNKAADAVALFDVIETVDREKIAAALASEIRKQGKSPKLYVQ 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL ++ARE
Sbjct: 128 VNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLEKLAREAH 187
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ KLSMGM+ D+E AI GATSVR+G+ IFG R
Sbjct: 188 VEKLSMGMSGDYETAIGFGATSVRVGAAIFGGR 220
>gi|256061832|ref|ZP_05451967.1| hypothetical protein Bneo5_15933 [Brucella neotomae 5K33]
gi|261325836|ref|ZP_05965033.1| alanine racemase domain-containing protein [Brucella neotomae 5K33]
gi|261301816|gb|EEY05313.1| alanine racemase domain-containing protein [Brucella neotomae 5K33]
Length = 226
Score = 227 bits (579), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 113/213 (53%), Positives = 146/213 (68%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K I + A+R SV+LVAVSK D+ IR AL GQ +F EN++QEA+ KW
Sbjct: 8 LNAVKAVIARAEKEARRENGSVTLVAVSKTFDTHAIRPALDAGQRVFGENRVQEAQGKWP 67
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ W ++L IG LQSNK ++ V+LFDVIETV REK A+ L+ E+ KQ + +Y+Q
Sbjct: 68 ALREAWASIELHLIGPLQSNKAADAVALFDVIETVDREKIAAALASEIRKQGKSPKLYVQ 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL ++ARE
Sbjct: 128 VNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLEKLAREAH 187
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ KLSMGM+ D+E AI GATSVR+G+ IFG R
Sbjct: 188 VEKLSMGMSGDYETAIGFGATSVRVGAAIFGGR 220
>gi|62290673|ref|YP_222466.1| hypothetical protein BruAb1_1788 [Brucella abortus bv. 1 str.
9-941]
gi|82700588|ref|YP_415162.1| hypothetical protein BAB1_1816 [Brucella melitensis biovar Abortus
2308]
gi|189024885|ref|YP_001935653.1| hypothetical protein BAbS19_I16970 [Brucella abortus S19]
gi|237816174|ref|ZP_04595169.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
gi|254689961|ref|ZP_05153215.1| hypothetical protein Babob68_07289 [Brucella abortus bv. 6 str.
870]
gi|254698112|ref|ZP_05159940.1| hypothetical protein Babob28_10483 [Brucella abortus bv. 2 str.
86/8/59]
gi|254730996|ref|ZP_05189574.1| hypothetical protein Babob42_07322 [Brucella abortus bv. 4 str.
292]
gi|256258216|ref|ZP_05463752.1| hypothetical protein Babob9C_12896 [Brucella abortus bv. 9 str.
C68]
gi|260547091|ref|ZP_05822829.1| alanine racemase domain-containing protein [Brucella abortus NCTC
8038]
gi|260755496|ref|ZP_05867844.1| alanine racemase domain-containing protein [Brucella abortus bv. 6
str. 870]
gi|260758719|ref|ZP_05871067.1| alanine racemase domain-containing protein [Brucella abortus bv. 4
str. 292]
gi|260762553|ref|ZP_05874890.1| alanine racemase domain-containing protein [Brucella abortus bv. 2
str. 86/8/59]
gi|260884517|ref|ZP_05896131.1| alanine racemase domain-containing protein [Brucella abortus bv. 9
str. C68]
gi|297249065|ref|ZP_06932773.1| YggS family pyridoxal phosphate enzyme [Brucella abortus bv. 5 str.
B3196]
gi|62196805|gb|AAX75105.1| conserved hypothetical protein TIGR00044 [Brucella abortus bv. 1
str. 9-941]
gi|82616689|emb|CAJ11772.1| Protein of unknown function UPF0001 [Brucella melitensis biovar
Abortus 2308]
gi|189020457|gb|ACD73179.1| hypothetical protein BAbS19_I16970 [Brucella abortus S19]
gi|237788636|gb|EEP62849.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
gi|260095456|gb|EEW79334.1| alanine racemase domain-containing protein [Brucella abortus NCTC
8038]
gi|260669037|gb|EEX55977.1| alanine racemase domain-containing protein [Brucella abortus bv. 4
str. 292]
gi|260672979|gb|EEX59800.1| alanine racemase domain-containing protein [Brucella abortus bv. 2
str. 86/8/59]
gi|260675604|gb|EEX62425.1| alanine racemase domain-containing protein [Brucella abortus bv. 6
str. 870]
gi|260874045|gb|EEX81114.1| alanine racemase domain-containing protein [Brucella abortus bv. 9
str. C68]
gi|297174198|gb|EFH33555.1| YggS family pyridoxal phosphate enzyme [Brucella abortus bv. 5 str.
B3196]
Length = 226
Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/213 (52%), Positives = 146/213 (68%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++QEA+ KW
Sbjct: 8 LNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQEARGKWP 67
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ W ++L IG LQSNK ++ V+LFD IETV REK A+ L+ E+ KQ + +Y+Q
Sbjct: 68 ALREAWASIELHLIGPLQSNKAADAVALFDAIETVDREKIAAALASEIRKQGKSPKLYVQ 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL ++ARE
Sbjct: 128 VNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLEKLAREAH 187
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ KLSMGM+ D+E AI GATSVR+G+ IFG R
Sbjct: 188 VEKLSMGMSGDYETAIGFGATSVRVGAAIFGGR 220
>gi|17986525|ref|NP_539159.1| phosphate regulon sensor protein PHOR [Brucella melitensis bv. 1
str. 16M]
gi|225853252|ref|YP_002733485.1| hypothetical protein BMEA_A1858 [Brucella melitensis ATCC 23457]
gi|254694453|ref|ZP_05156281.1| hypothetical protein Babob3T_07292 [Brucella abortus bv. 3 str.
Tulya]
gi|256045404|ref|ZP_05448298.1| hypothetical protein Bmelb1R_12992 [Brucella melitensis bv. 1 str.
Rev.1]
gi|256114372|ref|ZP_05455105.1| hypothetical protein Bmelb3E_16205 [Brucella melitensis bv. 3 str.
Ether]
gi|256263260|ref|ZP_05465792.1| alanine racemase domain-containing protein [Brucella melitensis bv.
2 str. 63/9]
gi|260565704|ref|ZP_05836187.1| alanine racemase domain-containing protein [Brucella melitensis bv.
1 str. 16M]
gi|261214767|ref|ZP_05929048.1| alanine racemase domain-containing protein [Brucella abortus bv. 3
str. Tulya]
gi|265991833|ref|ZP_06104390.1| alanine racemase domain-containing protein [Brucella melitensis bv.
1 str. Rev.1]
gi|265995672|ref|ZP_06108229.1| alanine racemase domain-containing protein [Brucella melitensis bv.
3 str. Ether]
gi|17982130|gb|AAL51423.1| phosphate regulon sensor protein phor [Brucella melitensis bv. 1
str. 16M]
gi|225641617|gb|ACO01531.1| conserved hypothetical protein [Brucella melitensis ATCC 23457]
gi|260151077|gb|EEW86172.1| alanine racemase domain-containing protein [Brucella melitensis bv.
1 str. 16M]
gi|260916374|gb|EEX83235.1| alanine racemase domain-containing protein [Brucella abortus bv. 3
str. Tulya]
gi|262766956|gb|EEZ12574.1| alanine racemase domain-containing protein [Brucella melitensis bv.
3 str. Ether]
gi|263002789|gb|EEZ15192.1| alanine racemase domain-containing protein [Brucella melitensis bv.
1 str. Rev.1]
gi|263093224|gb|EEZ17321.1| alanine racemase domain-containing protein [Brucella melitensis bv.
2 str. 63/9]
gi|326409811|gb|ADZ66876.1| phosphate regulon sensor protein PHOR [Brucella melitensis M28]
gi|326539529|gb|ADZ87744.1| conserved hypothetical protein [Brucella melitensis M5-90]
Length = 226
Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 112/213 (52%), Positives = 146/213 (68%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++QEA+ KW
Sbjct: 8 LNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQEAQGKWP 67
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ W ++L IG LQSNK ++ V+LFD IETV REK A+ L+ E+ KQ + +Y+Q
Sbjct: 68 ALREAWASIELHLIGPLQSNKAADAVALFDAIETVDREKIAAALASEIRKQGKSPKLYVQ 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL ++ARE
Sbjct: 128 VNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLEKLAREAH 187
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ KLSMGM+ D+E AI GATSVR+G+ IFG R
Sbjct: 188 VEKLSMGMSGDYETAIGFGATSVRVGAAIFGGR 220
>gi|15889996|ref|NP_355677.1| hypothetical protein Atu2747 [Agrobacterium tumefaciens str. C58]
gi|15157965|gb|AAK88462.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 220
Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 150/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +L+ +Q+I + A + R V+LVAVSK D++ I+ + GQ +F EN++QE
Sbjct: 2 MEIEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQE 61
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW L+ K D++L IG LQSNK ++ V+LFDV+E++ REK A LS E +Q R
Sbjct: 62 AQGKWPALKEKTSDIELHLIGPLQSNKAADAVALFDVVESIDREKIARALSEECARQGRS 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L Y+QVNTG E QK+GI P +T FV CR + +L VEGLMCIPPA NP PHF LL++
Sbjct: 122 LRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLPVEGLMCIPPAEENPGPHFALLAK 181
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C L KLSMGM+ DFE A+ GATSVR+GS IFG R
Sbjct: 182 LAGQCGLEKLSMGMSGDFETAVEFGATSVRVGSAIFGSR 220
>gi|153008428|ref|YP_001369643.1| alanine racemase domain-containing protein [Ochrobactrum anthropi
ATCC 49188]
gi|151560316|gb|ABS13814.1| alanine racemase domain protein [Ochrobactrum anthropi ATCC 49188]
Length = 250
Score = 226 bits (575), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/198 (55%), Positives = 146/198 (73%), Gaps = 1/198 (0%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIG 80
+R K SV+LVAVSK D+++IR L GQ +F EN++QEA+ KW LR ++ ++L IG
Sbjct: 47 QRDKASVTLVAVSKTFDAEEIRPVLDAGQRVFGENRVQEAQAKWPGLRDDYSGIELHLIG 106
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
LQSNK ++ V+LFDVIETV REK A+ L++E+ KQ++ +Y+QVNTG E QK+GI P
Sbjct: 107 PLQSNKAADAVALFDVIETVDREKIAAALAVEIKKQNKAPKLYVQVNTGLEEQKAGIAPK 166
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELA 200
+ FV CR+++ L +EGLMCIPPA NP PHF LL ++ARE ++ KLSMGM+ D+E A
Sbjct: 167 EAVAFVERCRKEHGLAIEGLMCIPPADENPGPHFALLEKLAREAQVEKLSMGMSGDYETA 226
Query: 201 IASGATSVRIGSGIFGER 218
I GATSVR+GS IFG R
Sbjct: 227 IGFGATSVRVGSAIFGGR 244
>gi|227823848|ref|YP_002827821.1| alanine racemase domain protein [Sinorhizobium fredii NGR234]
gi|227342850|gb|ACP27068.1| alanine racemase domain protein [Sinorhizobium fredii NGR234]
Length = 219
Score = 225 bits (573), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 111/219 (50%), Positives = 149/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +L +I S A R + V+LVAVSK D++ IR A++ GQ +F EN++QE
Sbjct: 1 MEVQERLNDVMSRIRASEAAADRAQGGVTLVAVSKTFDAEAIRPAIAAGQRVFGENRVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW L++E ++L IG LQSNK ++ V+LFDVIET+ REK A ++ E+ +Q R
Sbjct: 61 AQAKWPELKRETAGLELHLIGPLQSNKTADAVALFDVIETIDREKVARTVAAEIKRQGRK 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y+QVNTG E QK+GI P T FV LCR + L++EGLMCIPP NP PHF LL++
Sbjct: 121 PRLYVQVNTGLEAQKAGIAPQDTLAFVDLCRLELGLDIEGLMCIPPLDENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C L +LSMGM+ DFE AI GATSVR+GS IFG R
Sbjct: 181 LAAKCGLNRLSMGMSGDFETAIGFGATSVRVGSAIFGAR 219
>gi|148560723|ref|YP_001259647.1| hypothetical protein BOV_1741 [Brucella ovis ATCC 25840]
gi|148371980|gb|ABQ61959.1| conserved hypothetical protein TIGR00044 [Brucella ovis ATCC 25840]
Length = 226
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 112/213 (52%), Positives = 146/213 (68%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++QEA+ KW
Sbjct: 8 LNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQEAQGKWP 67
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ W ++L IG LQSNK ++ V+LFDVIETV REK A+ L+ E+ KQ + +Y+Q
Sbjct: 68 ALREAWASIELHLIGPLQSNKAADAVALFDVIETVDREKIAAALASEIRKQGKSPKLYVQ 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI + FV CR+++ L +EGLMCIPPA NP PHF LL ++ARE
Sbjct: 128 VNTGLEPQKAGIPLQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLEKLAREAH 187
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ KLSMGM+ D+E AI GATSVR+G+ IFG R
Sbjct: 188 VEKLSMGMSGDYETAIGFGATSVRVGAAIFGGR 220
>gi|110635537|ref|YP_675745.1| hypothetical protein Meso_3208 [Mesorhizobium sp. BNC1]
gi|110286521|gb|ABG64580.1| Protein of unknown function UPF0001 [Chelativorans sp. BNC1]
Length = 225
Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 110/199 (55%), Positives = 139/199 (69%), Gaps = 1/199 (0%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFI 79
A R V+LVAVSK + +I + GQ +F EN++QEA+ KW L++ + D++L I
Sbjct: 22 AGRASKDVALVAVSKTFAADEILPVIEAGQRVFGENRVQEAQGKWPGLKEAFPDIELHLI 81
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G LQSNK E V+LFDVIETV REK A+ L+ EM KQ R L +Y+QVNTG E QK+GI P
Sbjct: 82 GPLQSNKAKEAVALFDVIETVDREKIAAALAAEMEKQGRRLRLYVQVNTGLEPQKAGIDP 141
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFEL 199
+T FV CR+ + L +EGLMCIPP NP PHF LL ++ARE + KLSMGM+ DFE
Sbjct: 142 RETAAFVARCREVHGLEIEGLMCIPPLDENPGPHFALLEKLAREAGVEKLSMGMSGDFET 201
Query: 200 AIASGATSVRIGSGIFGER 218
AIA GATS+R+GS IFG R
Sbjct: 202 AIAFGATSIRVGSAIFGSR 220
>gi|260466803|ref|ZP_05812988.1| alanine racemase domain protein [Mesorhizobium opportunistum
WSM2075]
gi|259029415|gb|EEW30706.1| alanine racemase domain protein [Mesorhizobium opportunistum
WSM2075]
Length = 220
Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 112/220 (50%), Positives = 147/220 (66%), Gaps = 4/220 (1%)
Query: 3 LGNKLQVF---KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
+G+ +Q F K KI + A R +V+LVAVSK ++ I + GQ +F EN++Q
Sbjct: 1 MGDAVQQFFAVKAKIAAAEREAGREAGAVTLVAVSKTFEAADIGPVIEAGQRVFGENRVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW PL+ + D++L IG LQSNK E V+LFDVIETV REK A+ L+ E+ +Q R
Sbjct: 61 EAQGKWPPLKGAFPDIELHLIGPLQSNKAREAVALFDVIETVDREKIAAELAREIARQGR 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P + FV CR + L +EGLMCIPPA NP PHF LL
Sbjct: 121 APKLYVQVNTGSEPQKAGIEPREAVAFVARCRDVHGLAIEGLMCIPPADENPGPHFALLE 180
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ +E + KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 KLGKEAGVAKLSMGMSGDYETAIAFGATSVRVGSAIFGSR 220
>gi|319780906|ref|YP_004140382.1| alanine racemase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317166794|gb|ADV10332.1| alanine racemase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 220
Score = 221 bits (564), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 113/220 (51%), Positives = 147/220 (66%), Gaps = 4/220 (1%)
Query: 3 LGNKLQVF---KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
+G+ +Q F K KI + A R +V+LVAVSK D+ I + GQ +F EN++Q
Sbjct: 1 MGDAVQQFFAVKAKIAAAEREAGREAGAVTLVAVSKTFDAADIGPVIEAGQRVFGENRVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW L+ + D++L IG LQSNK E V+LFDVIETV REK A+ L+ E+ KQ R
Sbjct: 61 EAQAKWPDLKDAFPDIELHLIGPLQSNKAREAVALFDVIETVDREKIAAELAKEIAKQGR 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P FV CR+ + L +EGLMCIPPA NP PHF LL
Sbjct: 121 APKLYVQVNTGSEPQKAGIEPRDAVAFVARCREVHGLAIEGLMCIPPADENPGPHFALLE 180
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++++E + KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 KLSKEANVAKLSMGMSGDYETAIAFGATSVRVGSAIFGTR 220
>gi|158421901|ref|YP_001523193.1| hypothetical protein AZC_0277 [Azorhizobium caulinodans ORS 571]
gi|158328790|dbj|BAF86275.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
Length = 238
Score = 221 bits (562), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 144/215 (66%), Gaps = 1/215 (0%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L + IE + A R +++V+L+AVSK + +I ++ GQ +F EN++QE++ KW
Sbjct: 21 RLAGIQSAIEQACRDANRAREAVTLIAVSKTFGAAEIWPVIAAGQRVFGENRVQESQAKW 80
Query: 66 IPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
LR ++ ++L IG LQSNK ++ V+LFDVI TV R K A L+ EM +Q R LPV+I
Sbjct: 81 PELRARQAGLELHLIGPLQSNKAADAVALFDVIHTVDRPKIAYALAEEMSRQGRRLPVFI 140
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVNTG E QK+GI+P F+ CR K L+V GLMCIPPA P PHF LL+EIAR
Sbjct: 141 QVNTGAEPQKAGILPEAADAFIAECRDKAGLDVRGLMCIPPAEDVPAPHFALLAEIARHN 200
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L LSMGM+ DFE+AI GAT VR+GS +FG RP
Sbjct: 201 DLPGLSMGMSADFEVAIHQGATHVRVGSALFGSRP 235
>gi|13473468|ref|NP_105035.1| hypothetical protein mlr4078 [Mesorhizobium loti MAFF303099]
gi|14024217|dbj|BAB50821.1| mlr4078 [Mesorhizobium loti MAFF303099]
Length = 220
Score = 221 bits (562), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 115/220 (52%), Positives = 149/220 (67%), Gaps = 4/220 (1%)
Query: 3 LGNKLQVF---KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
+G+ +Q F K KI + A+R +V+LVAVSK D+ IR + GQ +F EN++Q
Sbjct: 1 MGDTVQQFFAVKAKIAAAEREARREAGAVTLVAVSKTFDAADIRPVIEAGQRVFGENRVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW L++ + D++L IG LQSNK E V+LFDVIETV REK A+ L+ E+ +Q R
Sbjct: 61 EAQGKWPDLKQAFADIELHLIGPLQSNKAKEAVALFDVIETVDREKIAAELAKEIARQGR 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P FV CR + L +EGLMCIPPA NP PHF LL
Sbjct: 121 APKLYVQVNTGSEPQKAGIEPRAAIAFVTRCRDVHGLAIEGLMCIPPADENPGPHFALLE 180
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ARE + KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 KLAREAGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGSR 220
>gi|114705826|ref|ZP_01438729.1| hypothetical protein FP2506_15209 [Fulvimarina pelagi HTCC2506]
gi|114538672|gb|EAU41793.1| hypothetical protein FP2506_15209 [Fulvimarina pelagi HTCC2506]
Length = 224
Score = 219 bits (557), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 109/219 (49%), Positives = 146/219 (66%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ K I + A R DSV+LVA+SK KI L G +F ENK+QE
Sbjct: 1 MAVADQYHAVKNAIAKAMADAGRKPDSVALVAISKTHGEDKILPLLEAGHRVFGENKVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW LR+ + D++LR +G LQSNK + V+LFDVIE+V REK A ++ E+ KQ R
Sbjct: 61 SQAKWPTLRERFPDIELRLVGPLQSNKTGDAVALFDVIESVDREKIARAIAKEVEKQGRN 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y+QVNTG E QK+GI+P + FV CR ++ L +EGLMCIPP NP PHF LL++
Sbjct: 121 PRLYVQVNTGEEEQKAGILPKEAVAFVERCRSEHGLTIEGLMCIPPVDENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A E + KLSMGM+ D+E AI GATSVR+GS IFGER
Sbjct: 181 LAGEAGVEKLSMGMSGDYETAIQFGATSVRVGSAIFGER 219
>gi|327533820|pdb|3R79|A Chain A, Crystal Structure Of An Uncharactertized Protein From
Agrobacterium Tumefaciens
gi|327533821|pdb|3R79|B Chain B, Crystal Structure Of An Uncharactertized Protein From
Agrobacterium Tumefaciens
Length = 244
Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 108/214 (50%), Positives = 145/214 (67%), Gaps = 1/214 (0%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L+ +Q+I + A + R V+LVAVSK D++ I+ + GQ +F EN++QEA+ KW
Sbjct: 9 RLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQGKW 68
Query: 66 IPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
L+ K D++L IG LQSNK ++ V+LFDV+E++ REK A LS E +Q R L Y+
Sbjct: 69 PALKEKTSDIELHLIGPLQSNKAADAVALFDVVESIDREKIARALSEECARQGRSLRFYV 128
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVNTG E QK+GI P +T FV CR + +L VEGL CIPPA NP PHF LL+++A +C
Sbjct: 129 QVNTGLEPQKAGIDPRETVAFVAFCRDELKLPVEGLXCIPPAEENPGPHFALLAKLAGQC 188
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L KLS G + DFE A+ GATSVR+GS IFG R
Sbjct: 189 GLEKLSXGXSGDFETAVEFGATSVRVGSAIFGSR 222
>gi|307943451|ref|ZP_07658795.1| pyridoxal phosphate enzyme, YggS family [Roseibium sp. TrichSKD4]
gi|307773081|gb|EFO32298.1| pyridoxal phosphate enzyme, YggS family [Roseibium sp. TrichSKD4]
Length = 224
Score = 214 bits (544), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 106/215 (49%), Positives = 138/215 (64%), Gaps = 1/215 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++L + ++ + R SV+L+AVSK ++ IR L GQ +F EN++QEA K
Sbjct: 7 DRLASVQAELRRAESDGNRENGSVTLIAVSKTFEANDIRPVLGAGQRVFGENRVQEAMGK 66
Query: 65 WIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W LR+E++ V+L IG LQSNK E V FDVI TV R+K A L EM KQ R LP +
Sbjct: 67 WPGLREEFEGVELHLIGPLQSNKAKEAVQTFDVIHTVDRQKIAKALKAEMDKQGRDLPCF 126
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVNTG E QK+GI P +T FV C+ +LN+ GLMCIPP P PHF LL EIA+
Sbjct: 127 VQVNTGEEPQKAGISPKETDAFVTFCQNDIRLNIVGLMCIPPVEEAPGPHFALLEEIAKR 186
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +LSMGM+ D+E+A+ GAT VR+GS IFG R
Sbjct: 187 NSLKQLSMGMSSDYEIAVGFGATHVRVGSAIFGAR 221
>gi|121602346|ref|YP_988440.1| hypothetical protein BARBAKC583_0102 [Bartonella bacilliformis
KC583]
gi|120614523|gb|ABM45124.1| conserved hypothetical protein TIGR00044 [Bartonella bacilliformis
KC583]
Length = 226
Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 142/210 (67%), Gaps = 1/210 (0%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
KQ+I NS +R DSV L+AVSK V + KI L GQ FAEN++QEA +KW LR+
Sbjct: 16 KQEIANSCKEYQRSLDSVELIAVSKTVPADKIIPLLQAGQSCFAENRVQEAAEKWPYLRQ 75
Query: 71 EWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
++ ++L IG LQSNK +E V +FDVI+TV REK A LS EM KQ + P Y+QVN G
Sbjct: 76 QFSPIELHLIGPLQSNKTAEAVKIFDVIQTVDREKIAKSLSEEMHKQKKHFPCYVQVNIG 135
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKL 189
E QKSG+ P DFV C+ Y L++ GLM IPP NP P+F LL+++A++ LTKL
Sbjct: 136 LEPQKSGLAPEDVVDFVAHCKNHYGLDIVGLMAIPPIEDNPGPYFALLAKLAKKSGLTKL 195
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERP 219
SMGM+ DF+ A+ G+ +RIGS +FG+RP
Sbjct: 196 SMGMSNDFQTALQFGSNVLRIGSALFGQRP 225
>gi|319899420|ref|YP_004159517.1| hypothetical protein BARCL_1280 [Bartonella clarridgeiae 73]
gi|319403388|emb|CBI76952.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
Length = 226
Score = 213 bits (542), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 103/197 (52%), Positives = 138/197 (70%), Gaps = 1/197 (0%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGS 81
RP +++ L+AVSK V + I L GQ +FAEN++QEA +KW PLR+++ ++L IG
Sbjct: 28 RPVENIQLIAVSKTVSADNIVPLLQVGQSLFAENRVQEANEKWPPLRQKFKTIELHLIGP 87
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQSNK +E V +FDVI+TV REK A L+ EM KQ + LP Y+QVN G E QKSGI P +
Sbjct: 88 LQSNKTTEAVKIFDVIQTVDREKIAKNLAKEMQKQKKHLPCYVQVNMGLEPQKSGIAPQE 147
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI 201
K FV C+ Y L++ GLM IPP NP P+F LL+++A+E L+KLSMGM+ DF++AI
Sbjct: 148 VKAFVAQCKNNYGLDIVGLMAIPPVQENPGPYFALLAKLAKETNLSKLSMGMSNDFKIAI 207
Query: 202 ASGATSVRIGSGIFGER 218
GA +RIGS +FG R
Sbjct: 208 QFGANVLRIGSALFGNR 224
>gi|328541708|ref|YP_004301817.1| Alanine racemase domain protein [polymorphum gilvum SL003B-26A1]
gi|326411460|gb|ADZ68523.1| Alanine racemase domain protein [Polymorphum gilvum SL003B-26A1]
Length = 266
Score = 213 bits (541), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/215 (48%), Positives = 136/215 (63%), Gaps = 1/215 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++L +I + R SV+++AVSK ++IR L+ GQ +F EN++QEA K
Sbjct: 49 DRLTCVTAEIRAAEAEYGRAAGSVTVIAVSKTFSGEEIRPVLAAGQRVFGENRVQEAMAK 108
Query: 65 WIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W LR ++ ++L IG LQSNK E V++FDVI TV REK A L EM +Q R LP +
Sbjct: 109 WPGLRADFPGIELHLIGPLQSNKAKEAVAIFDVIHTVDREKIARALKSEMDRQGRHLPCF 168
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVNTG E QK+GI P QT FV CR + L+V GLMCIPP P PHF LL +IA
Sbjct: 169 VQVNTGEEAQKAGIAPAQTDAFVAFCRDEVGLDVAGLMCIPPVEEAPGPHFALLQKIAAR 228
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +LSMGM+ DF +A+ GAT VR+GS IFG R
Sbjct: 229 NGLAQLSMGMSSDFPIAVGFGATHVRVGSAIFGSR 263
>gi|163757457|ref|ZP_02164546.1| hypothetical protein HPDFL43_18642 [Hoeflea phototrophica DFL-43]
gi|162284959|gb|EDQ35241.1| hypothetical protein HPDFL43_18642 [Hoeflea phototrophica DFL-43]
Length = 226
Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 107/206 (51%), Positives = 140/206 (67%), Gaps = 1/206 (0%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW- 72
I ++ A RP SV LVAVSK ++IR ++ G+ +F EN++QEA+ KW L+ E
Sbjct: 18 IADAETSAGRPAGSVGLVAVSKTKPVEEIRPVIAAGRRVFGENRVQEAQSKWPQLKAETP 77
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
D++L IG LQSNK ++ V+LFDVI+TV REK A ++ E+ KQ R ++IQVNTG E
Sbjct: 78 DLELHLIGPLQSNKTADAVALFDVIQTVDREKIAREIAREIKKQGRAPGLFIQVNTGSEP 137
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMG 192
QK+GI P+ FV LCR + L + GLMCIPP NP PHF LL+ IARE L +LSMG
Sbjct: 138 QKAGIEPDAAAAFVDLCRSELGLTIRGLMCIPPFDENPGPHFALLANIAREAGLEELSMG 197
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D+ +AIA GAT VR+GS IFG R
Sbjct: 198 MSDDYPIAIAFGATQVRVGSAIFGAR 223
>gi|163869197|ref|YP_001610449.1| hypothetical protein Btr_2479 [Bartonella tribocorum CIP 105476]
gi|161018896|emb|CAK02454.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
Length = 235
Score = 211 bits (537), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 101/199 (50%), Positives = 141/199 (70%), Gaps = 1/199 (0%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIG 80
+RP++ V L+AVSK V + IR L GQ +FAEN++QEA +KW+ LR++++ ++L IG
Sbjct: 36 QRPREEVELIAVSKTVSIEDIRPLLQAGQSLFAENRVQEAAQKWLGLRQQFENIKLHLIG 95
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
LQSNK +E V +FDVI+TV REK A +L+ EM KQ R +P Y+QVN G E QKSGI P
Sbjct: 96 PLQSNKAAEAVKIFDVIQTVDREKIAKILAEEMQKQKRHIPCYVQVNIGLEPQKSGIAPQ 155
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELA 200
+ FV C+ Y L++ GLM IPP NP P+F LL+++A++ L KLSMGM+ DF+ A
Sbjct: 156 EVIPFVSQCKNNYGLDIIGLMAIPPVDENPGPYFALLAKLAKQAGLPKLSMGMSNDFKTA 215
Query: 201 IASGATSVRIGSGIFGERP 219
+ G+ +RIGS +FG+RP
Sbjct: 216 LQFGSNVLRIGSALFGKRP 234
>gi|300024797|ref|YP_003757408.1| alanine racemase domain protein [Hyphomicrobium denitrificans ATCC
51888]
gi|299526618|gb|ADJ25087.1| alanine racemase domain protein [Hyphomicrobium denitrificans ATCC
51888]
Length = 226
Score = 211 bits (536), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 144/215 (66%), Gaps = 1/215 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++L+ + +I +A KR + L+AVSK D+ +R L+ GQ +F EN++QEA++K
Sbjct: 12 DRLKRVRHEIVAAAEAVKRSPADIELIAVSKTFDADAVRPVLAAGQRVFGENRVQEAERK 71
Query: 65 WIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W L++E+ DV+L IG LQSNK + V+LFDVI T+ REK A ++ E+ +Q R L ++
Sbjct: 72 WPELKREFADVELHLIGPLQSNKAKDAVALFDVIHTIDREKIARAVAEEISRQGRALKLF 131
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVNTG E QK+G+ P++ K FV CR +L + GLMCIPP P HF L+++A+E
Sbjct: 132 VQVNTGEEPQKAGVPPSEAKAFVDFCRSDLKLPIVGLMCIPPVDEEPAVHFAFLAKLAKE 191
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 192 GGLKSLSMGMSSDFETAIAFGATHVRVGSAIFGGR 226
>gi|209965826|ref|YP_002298741.1| hypothetical protein RC1_2548 [Rhodospirillum centenum SW]
gi|209959292|gb|ACI99928.1| conserved hypothetical protein [Rhodospirillum centenum SW]
Length = 241
Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/222 (46%), Positives = 143/222 (64%), Gaps = 1/222 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + I +A R V+LVAVSK+ +K+R AL+ GQ +F EN++QEA
Sbjct: 17 DIAADLAAVRTAIAGAADAVGRDPRGVTLVAVSKVQPVEKLRAALAAGQRVFGENRVQEA 76
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K KW L+ E+ DV+L IG LQ+NKV E V+LFDVI+TV R K A L+ E +Q+R+
Sbjct: 77 KAKWPALKAEYPDVELHLIGPLQTNKVKEAVALFDVIQTVDRPKLAQALAAECRRQNRWP 136
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
Y++VNTG E QK+GI P + F+ C+ +Y + V GLM IPPA P PHF LL+++
Sbjct: 137 RFYVEVNTGEEPQKAGIAPAEVGAFLAACKAEYGVQVAGLMAIPPAEDEPSPHFALLADL 196
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
AR + LSMGM+ DF++A+ GAT VR+G+ IFGER T
Sbjct: 197 ARRHFVPGLSMGMSHDFDVAVRLGATVVRVGTAIFGERATPT 238
>gi|319407775|emb|CBI81422.1| conserved hypothetical protein [Bartonella sp. 1-1C]
Length = 226
Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 143/210 (68%), Gaps = 1/210 (0%)
Query: 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69
+Q I + RP ++ L+AVSK V + I L GQ +FAEN++QEA +KW LR
Sbjct: 15 LQQDIAKTCQDYHRPVKNIQLIAVSKTVTANNIVPLLKAGQSLFAENRVQEAAEKWPSLR 74
Query: 70 KEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
++++ ++L IG LQSNK +E V++FDVI+TV REK A L+ EM KQ + LP YIQVN
Sbjct: 75 QQFNTIELHLIGPLQSNKTAEAVTIFDVIQTVDREKIAKSLAEEMHKQKKHLPCYIQVNI 134
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK 188
G E QKSGI P++ K FV C+ Y L++ GLM IPP NP P+F LL+++A+E L+K
Sbjct: 135 GLEPQKSGIFPHEVKAFVAQCKNNYGLDIIGLMAIPPLQENPGPYFALLAKLAKETGLSK 194
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ DF++A+ GA +RIGS +FG R
Sbjct: 195 LSMGMSNDFKIALQFGANVLRIGSALFGPR 224
>gi|319406300|emb|CBI79937.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
Length = 226
Score = 207 bits (528), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 141/210 (67%), Gaps = 1/210 (0%)
Query: 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69
+Q+I + RP +++ L+A SK V + I L GQ +FAEN++QEA +KW LR
Sbjct: 15 LQQEIAKTCQDYHRPVENIQLIAASKTVSANNIVPLLQAGQFLFAENRVQEAAEKWPSLR 74
Query: 70 KEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
++++ ++L IG LQSNK +E V +FDVI+TV REK A L+ EM KQ + LP YIQVN
Sbjct: 75 QKFNTIELHLIGPLQSNKTAEAVKIFDVIQTVDREKIAKKLAEEMHKQKKHLPCYIQVNI 134
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK 188
G E QKSGI P + K FV C+ Y L++ GLM IPP NP P+F LL+++A+E L K
Sbjct: 135 GLESQKSGIFPQEVKAFVAQCKNNYGLDIIGLMAIPPIQENPGPYFALLAKLAKETGLPK 194
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ DF++A+ GA +RIGS +FG R
Sbjct: 195 LSMGMSNDFKIALQFGANVLRIGSALFGSR 224
>gi|319404815|emb|CBI78416.1| conserved hypothetical protein [Bartonella rochalimae ATCC
BAA-1498]
Length = 226
Score = 207 bits (527), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 142/210 (67%), Gaps = 1/210 (0%)
Query: 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69
+Q I + RP +++ L+AVSK V + I L G +FAEN++QEA +KW LR
Sbjct: 15 LQQDIAKTCHDYHRPVENIQLIAVSKTVAANNIVPLLQAGHSLFAENRVQEAAEKWPSLR 74
Query: 70 KEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
++++ ++L IG LQSNK +E V +FDVI+TV REK A L+ EM KQ + LP YIQVN
Sbjct: 75 QKFNTIELHLIGPLQSNKTAEAVRIFDVIQTVDREKIAKSLAEEMHKQKKHLPCYIQVNI 134
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK 188
G E QKSGI P++ K FV C+ Y L++ GLM IPP NP P+F LL+++A+E L+K
Sbjct: 135 GLEPQKSGIFPHEVKAFVAQCKNNYGLDIVGLMGIPPIQENPGPYFALLAKLAKEIGLSK 194
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ DF++A+ GA +RIGS +FG R
Sbjct: 195 LSMGMSNDFKIALQFGANVLRIGSALFGPR 224
>gi|240851274|ref|YP_002972677.1| hypothetical protein Bgr_18910 [Bartonella grahamii as4aup]
gi|240268397|gb|ACS51985.1| hypothetical protein Bgr_18910 [Bartonella grahamii as4aup]
Length = 229
Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 97/199 (48%), Positives = 140/199 (70%), Gaps = 1/199 (0%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIG 80
+RP + + L+AVSK V + +R L GQ +FAEN++QEA +KW+ LR++++ ++L IG
Sbjct: 30 QRPVEEIELIAVSKTVSAADVRPLLQAGQSLFAENRVQEAAQKWLGLRQQFENIKLHLIG 89
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
LQSNK +E + +FDVI+TV REK A +L+ EM KQ R LP Y+QVN G E QKSG+ P
Sbjct: 90 PLQSNKAAEAIKIFDVIQTVDREKIAKILAEEMQKQKRHLPCYVQVNIGLEPQKSGVAPQ 149
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELA 200
+ FV C+ Y L++ GLM IPP NP P+F LL+++A++ L K+SMGM+ DF+ A
Sbjct: 150 EVIPFVNQCKNNYGLDIIGLMGIPPVDENPGPYFALLAKLAKQADLPKISMGMSSDFKTA 209
Query: 201 IASGATSVRIGSGIFGERP 219
+ G+ +RIGS +FG+RP
Sbjct: 210 LQFGSNVLRIGSALFGKRP 228
>gi|254472228|ref|ZP_05085628.1| conserved hypothetical protein TIGR00044 [Pseudovibrio sp. JE062]
gi|211958511|gb|EEA93711.1| conserved hypothetical protein TIGR00044 [Pseudovibrio sp. JE062]
Length = 225
Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 103/214 (48%), Positives = 138/214 (64%), Gaps = 1/214 (0%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L+ K+ I + A+RP SV+L+AVSK ++ I+ L GQ +F EN++QEA KW
Sbjct: 8 RLKEVKENIGKAEKDAERPNGSVTLIAVSKTFEASAIKPVLEAGQRVFGENRVQEAMGKW 67
Query: 66 IPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
LR+E++ V+L IG LQSNK E + FDVI TV R+K A L EM KQ + ++I
Sbjct: 68 PGLREEFEGVELHLIGPLQSNKAKEAIQTFDVIHTVDRDKIAKALKAEMDKQGKTPKLFI 127
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVNTG E QK+GI P + F+ CR +Y L +EGLMCIPP P HF LL +IA+
Sbjct: 128 QVNTGEEEQKAGIPPKEADAFIAKCRDEYGLEIEGLMCIPPVDEAPGMHFALLEKIAKRN 187
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L KLSMGM+ D+ +A+ GAT VR+GS +FG R
Sbjct: 188 GLEKLSMGMSSDYPIAVQHGATHVRVGSAVFGAR 221
>gi|294085223|ref|YP_003551983.1| hypothetical protein SAR116_1656 [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292664798|gb|ADE39899.1| Protein of unknown function UPF0001 [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 223
Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 105/191 (54%), Positives = 127/191 (66%), Gaps = 1/191 (0%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKV 87
+LVAVSK +I AL GQ F EN++QEA+ +W R + D+ L IG+LQ+NK
Sbjct: 31 TLVAVSKRQPDDRIDAALDAGQRCFGENRVQEAQTRWAARRAAYPDLILHLIGALQTNKA 90
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
++ V+LFDVIE V R K A LS EM KQ+R L YIQVNTG E QKSGI P DF+
Sbjct: 91 ADAVALFDVIEVVDRPKLARALSGEMAKQNRQLDCYIQVNTGDEPQKSGISPADVDDFIA 150
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATS 207
CR +Y LN+ GLMCIPPA P HF LL+ IA+ L KLSMGM+ D+E AI GATS
Sbjct: 151 QCRDEYGLNIIGLMCIPPADEEPAMHFALLATIAKRNGLDKLSMGMSGDYEEAIGFGATS 210
Query: 208 VRIGSGIFGER 218
VR+GS IFG R
Sbjct: 211 VRVGSAIFGAR 221
>gi|83309121|ref|YP_419385.1| TIM-barrel fold family protein [Magnetospirillum magneticum AMB-1]
gi|82943962|dbj|BAE48826.1| Predicted enzyme with a TIM-barrel fold [Magnetospirillum
magneticum AMB-1]
Length = 216
Score = 205 bits (522), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 143/213 (67%), Gaps = 6/213 (2%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +I +A RP V+LVAVSK ++ IR A++ GQ +F EN++QEAK K+
Sbjct: 8 LEAVRSRIAAAA--QGRP---VTLVAVSKTYPAEAIREAMAAGQRVFGENRVQEAKAKFP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR E+ D++L IG LQ+NKV + V+LFDVIETV R K A ++ EM + R V IQ
Sbjct: 63 GLRDEYPDLELHLIGPLQTNKVRDAVALFDVIETVDRPKLARAIADEMQRSGRRPRVLIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI P + V LCR ++ L + GLMCIPPA +P PHF LL+++A+
Sbjct: 123 VNTGLEPQKAGIGPGELDAMVALCRDEFGLPLAGLMCIPPADEDPAPHFRLLADMAKRHG 182
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +SMGM+ DFE+A+A GAT VR+GS IFG R
Sbjct: 183 LGVVSMGMSGDFEIAVAEGATHVRVGSAIFGHR 215
>gi|304392701|ref|ZP_07374641.1| pyridoxal phosphate enzyme, YggS family [Ahrensia sp. R2A130]
gi|303295331|gb|EFL89691.1| pyridoxal phosphate enzyme, YggS family [Ahrensia sp. R2A130]
Length = 233
Score = 204 bits (519), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 101/198 (51%), Positives = 134/198 (67%), Gaps = 1/198 (0%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIG 80
+R + V+L+AVSK D+ I AL G +F EN++QE++ KW LR E+ DV+L IG
Sbjct: 32 ERRGEDVTLIAVSKTFDADAICPALEAGHRVFGENRVQESQGKWPELRAEFSDVELHLIG 91
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
LQSNK ++ V LFDVI TV REK A L+ EM KQ + +++QVNTG E QK+GI P
Sbjct: 92 PLQSNKSADAVELFDVIHTVDREKIAKALAGEMKKQGKTPKLFVQVNTGEEPQKAGIAPK 151
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELA 200
+ FV CR ++ L +EGLMCIPPA NP PHF LL ++A E + LSMGM+ D+++A
Sbjct: 152 EAVAFVQRCRDEHGLEIEGLMCIPPADENPGPHFELLRKLADEADVNGLSMGMSGDYQVA 211
Query: 201 IASGATSVRIGSGIFGER 218
+ GAT VR+GS IFG R
Sbjct: 212 VQFGATHVRVGSAIFGVR 229
>gi|254501830|ref|ZP_05113981.1| conserved hypothetical protein TIGR00044 [Labrenzia alexandrii
DFL-11]
gi|222437901|gb|EEE44580.1| conserved hypothetical protein TIGR00044 [Labrenzia alexandrii
DFL-11]
Length = 223
Score = 204 bits (518), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 101/197 (51%), Positives = 128/197 (64%), Gaps = 1/197 (0%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIGS 81
RP+ +V+L+AVSK ++ IR AL G +F EN++QEA KW LR +D ++L IG
Sbjct: 24 RPEGAVTLIAVSKTFEADAIRPALEAGHRVFGENRVQEAMGKWPELRGSYDGIELHLIGP 83
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQSNK E V+ FDVI TV R+K A L EM KQ R LP +IQVNTG E QK+GI P +
Sbjct: 84 LQSNKAKEAVATFDVIHTVDRQKIAKALKAEMDKQGRDLPCFIQVNTGEEPQKAGIPPKE 143
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI 201
FV C+ LN+ GLMCIPP P HF LL +IA L+++SMGM+ D+E A+
Sbjct: 144 VDQFVKECKDTVGLNIVGLMCIPPVDEAPGEHFALLQKIAARNGLSQISMGMSSDYETAV 203
Query: 202 ASGATSVRIGSGIFGER 218
GAT VR+GS IFG R
Sbjct: 204 GFGATHVRVGSAIFGSR 220
>gi|154244235|ref|YP_001415193.1| alanine racemase domain-containing protein [Xanthobacter
autotrophicus Py2]
gi|154158320|gb|ABS65536.1| alanine racemase domain protein [Xanthobacter autotrophicus Py2]
Length = 232
Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/213 (47%), Positives = 137/213 (64%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + ++ +S A R +V+LVAVSK + +I L+ GQ +F EN++QEA+ KW
Sbjct: 14 LHAVRAEVLSSCRDAGRDPATVTLVAVSKTFPAPEIVPVLAAGQRVFGENRVQEAQGKWP 73
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR ++ V+L IG LQSNK E V LFDVI TV R K A+ L+ EM +Q R +++Q
Sbjct: 74 ALRADYQGVELHLIGPLQSNKAREAVELFDVIHTVDRPKIAAALAGEMARQGRNPRLFVQ 133
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P F+ CR+++ L + GLMCIPPA P PHF LL++IA
Sbjct: 134 VNTGAEPQKAGVLPETADAFIAECRERHGLKIFGLMCIPPATDVPDPHFALLAKIAARNG 193
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGM+ DF AI GAT VR+GS IFG R
Sbjct: 194 ISGLSMGMSADFPAAIRQGATHVRVGSAIFGHR 226
>gi|83594963|ref|YP_428715.1| hypothetical protein Rru_A3634 [Rhodospirillum rubrum ATCC 11170]
gi|83577877|gb|ABC24428.1| Protein of unknown function UPF0001 [Rhodospirillum rubrum ATCC
11170]
Length = 242
Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 134/214 (62%), Gaps = 1/214 (0%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L+ + I ++ R V+LVAVSK +++R AL G +F EN++QEA+ KW
Sbjct: 19 NLRAVRGAIADACKPVGRDAAGVALVAVSKNNGPERVRAALRAGHRLFGENRVQEAQGKW 78
Query: 66 IPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ + D+ L IG LQ+NKV E V+LFD I++V R + A L+ EM Q R LPV I
Sbjct: 79 PAFKADHADIDLHLIGPLQTNKVREAVALFDAIDSVDRPRLARALAEEMDHQGRRLPVLI 138
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVNTG E QK+GI+P F+ CR+ L+V GLMCIPP P PHF LL EIAR
Sbjct: 139 QVNTGEEPQKAGILPRDADGFLRECREDLGLDVRGLMCIPPVDDEPSPHFALLREIARRH 198
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ D+ +A+A GAT VR+G+ IFG+R
Sbjct: 199 GLGVLSMGMSADYGVAVAFGATHVRLGTAIFGDR 232
>gi|86747509|ref|YP_484005.1| hypothetical protein RPB_0383 [Rhodopseudomonas palustris HaA2]
gi|86570537|gb|ABD05094.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
HaA2]
Length = 221
Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 134/221 (60%), Gaps = 3/221 (1%)
Query: 1 MSLG--NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
MS G L +Q+I + A+R +DSV+L+AVSK ++ I L+ GQ +F EN++
Sbjct: 1 MSAGPVQGLAAVEQEIARACQEARRDRDSVTLIAVSKTFEADAILPVLAAGQRVFGENRV 60
Query: 59 QEAKKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
QEAK KW PL D L IG LQSNK E V+LFD I +V RE L+ +
Sbjct: 61 QEAKAKWPPLLESHPDTALHLIGPLQSNKAKEAVALFDAIHSVDRESLCEALAKVLPASG 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
R + +++Q+NTG E QK+GI P F+ CR ++ L + GLMCIPP P PHF L
Sbjct: 121 RAVELFVQINTGEEPQKAGIAPQDADAFIAACRDRFGLTIAGLMCIPPVDEAPAPHFALT 180
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++IA+ L KLSMGM+ DF AIA GAT VR+GS IFG R
Sbjct: 181 AKIAKRNGLAKLSMGMSSDFATAIAFGATHVRVGSAIFGHR 221
>gi|217976529|ref|YP_002360676.1| alanine racemase domain protein [Methylocella silvestris BL2]
gi|217501905|gb|ACK49314.1| alanine racemase domain protein [Methylocella silvestris BL2]
Length = 230
Score = 202 bits (514), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/219 (48%), Positives = 142/219 (64%), Gaps = 1/219 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++L +++I +A A RP ++LV VSK + +I L+ G+ F EN++QEA
Sbjct: 10 SVLDRLAEVRKEIGRAAADAGRPPGDIALVCVSKTFSAAEIEPVLAAGERRFGENRVQEA 69
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++KW LR+ + DV+L IG LQSNK E V LFDVIETV R+K A L+ E K +R
Sbjct: 70 QEKWPALRQAYPDVELHLIGPLQSNKAHEAVKLFDVIETVDRDKIAKALATEAAKAARRP 129
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
Y+QVNTG E QK+G++P + F+ CR +Y L + GLMCIPP PHF LL++I
Sbjct: 130 KFYVQVNTGAEPQKAGVLPGEADAFIARCRNEYGLEIAGLMCIPPVDDQASPHFALLNQI 189
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
A L +LSMGM+ DFELAI GAT VRIGS IFG RP
Sbjct: 190 AARNGLRELSMGMSGDFELAIQLGATHVRIGSAIFGGRP 228
>gi|49476195|ref|YP_034236.1| hypothetical protein BH15400 [Bartonella henselae str. Houston-1]
gi|49239003|emb|CAF28303.1| hypothetical protein BH15400 [Bartonella henselae str. Houston-1]
Length = 229
Score = 202 bits (513), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 99/198 (50%), Positives = 136/198 (68%), Gaps = 1/198 (0%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGS 81
R + + +AVSK V + IR L GQ +FAEN++QEA +KW LR+++ +++L IG
Sbjct: 31 RLAEEIQFIAVSKTVSVENIRPLLQAGQSVFAENRVQEATEKWSVLRQQFKNIELHLIGP 90
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQSNK ++ V +FDVI+TV REK A LS+EM KQ + LP YIQVN G E QKSGI P +
Sbjct: 91 LQSNKTAQAVKIFDVIQTVDREKIAKNLSIEMQKQKKTLPCYIQVNLGLEPQKSGIAPQE 150
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI 201
FV C+ Y L++ GLM IPP NP P+F LL+++A++ L KLSMGM+ DF+ A+
Sbjct: 151 VVPFVARCKNHYGLDIIGLMAIPPVEENPGPYFALLAKLAKQADLQKLSMGMSNDFKTAL 210
Query: 202 ASGATSVRIGSGIFGERP 219
G+ +RIGS +FG+RP
Sbjct: 211 QFGSNVLRIGSALFGKRP 228
>gi|167648989|ref|YP_001686652.1| alanine racemase domain-containing protein [Caulobacter sp. K31]
gi|167351419|gb|ABZ74154.1| alanine racemase domain protein [Caulobacter sp. K31]
Length = 214
Score = 200 bits (509), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 102/193 (52%), Positives = 132/193 (68%), Gaps = 3/193 (1%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
D+V+LVAVSK+ I L GQ +F EN++QEA +W R E ++LR IG LQSN
Sbjct: 24 DAVTLVAVSKLQPWDHIAPILDAGQRVFGENRVQEAMGRWSERRAE--IELRLIGPLQSN 81
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
K E V+ FDVIE++ REK A +L+ E+ + + +++QVNTG E QK+G+ PNQ F
Sbjct: 82 KAREAVAFFDVIESLDREKLARVLAGEIQARGKAPGLFVQVNTGEEPQKAGVTPNQADAF 141
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA 205
+ LCR L VEGLMCIPPA +P PHF LL++IA L+KLSMGM+ DFE AIA GA
Sbjct: 142 IALCR-GLDLPVEGLMCIPPAELDPAPHFRLLADIAARNGLSKLSMGMSDDFETAIACGA 200
Query: 206 TSVRIGSGIFGER 218
TSVR+GS +FG R
Sbjct: 201 TSVRVGSALFGRR 213
>gi|319409377|emb|CBI83021.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 226
Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/198 (52%), Positives = 144/198 (72%), Gaps = 1/198 (0%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIGS 81
R +SV L+AVSK V +++I L GQ++FAEN++QEA +KW L+++++ ++L IG
Sbjct: 28 RSLESVELIAVSKTVAAQQIVPLLQAGQLLFAENRVQEAAQKWPCLQEQFEAIKLHLIGP 87
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQSNKV E V +FDVI+TV REK A LS EM KQ ++LP Y+QVN G E QKSGI P +
Sbjct: 88 LQSNKVVEAVKIFDVIQTVDREKIAQKLSEEMNKQKKYLPCYVQVNIGLEPQKSGIAPQE 147
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI 201
DFV LC+ KY L++ GLM IPP NP P+F LL+++A++ ++KLSMGM+ DF+ A+
Sbjct: 148 VADFVSLCKNKYGLDIIGLMAIPPVEENPGPYFALLAKLAKKAGVSKLSMGMSNDFKTAL 207
Query: 202 ASGATSVRIGSGIFGERP 219
GA +RIG+ +FG+RP
Sbjct: 208 QFGANVLRIGTALFGQRP 225
>gi|144900382|emb|CAM77246.1| Protein of unknown function UPF0001 [Magnetospirillum
gryphiswaldense MSR-1]
Length = 223
Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 140/213 (65%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L V ++ + A R +V+LVAVSK DS IR L G +F EN++QEAK KW
Sbjct: 8 LAVLCAAMDQAEREAGRATGAVTLVAVSKTHDSDAIRPFLQAGLRVFGENRVQEAKTKWP 67
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L++++ +L IG LQ+NKV + V+LFDVIET+ R K A +++ E+ + +Q
Sbjct: 68 ELKQDFPQTELHLIGPLQTNKVRDAVALFDVIETIDRPKLARVVADEIQRLGHGPRCLVQ 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VN G E QK+GI P+QT V LCR++Y L + GLMCIPPA G+P PHF L+E+A++
Sbjct: 128 VNIGREAQKAGIDPDQTAALVDLCRREYGLTISGLMCIPPAEGDPVPHFRRLAELAKDLG 187
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L ++SMGM+ DF AIA GAT +R+GS +FG+R
Sbjct: 188 LAEISMGMSGDFPAAIACGATHIRVGSALFGQR 220
>gi|118591433|ref|ZP_01548831.1| hypothetical protein SIAM614_27338 [Stappia aggregata IAM 12614]
gi|118436105|gb|EAV42748.1| hypothetical protein SIAM614_27338 [Stappia aggregata IAM 12614]
Length = 223
Score = 200 bits (509), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/218 (47%), Positives = 135/218 (61%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S ++L + I N+ R + SV+L+AVSK ++ +IR L GQ +F EN++QEA
Sbjct: 3 SAADRLANVQADIRNAEAEFGRAQGSVTLIAVSKTFEADEIRPVLEAGQRVFGENRVQEA 62
Query: 62 KKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KW LR++++ ++L IG LQSNK E ++ FDV+ TV R K A L EM KQ R L
Sbjct: 63 MHKWPGLREDFEGIELHLIGPLQSNKAKEAIATFDVVHTVDRPKIARALKAEMEKQGRDL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
P +IQVNTG E QK+GI P FV CR+ LN+ GLMCIPP HF LL +I
Sbjct: 123 PCFIQVNTGEEPQKAGIAPKDVDAFVKECREDVGLNIVGLMCIPPVNEASGEHFALLEKI 182
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A L KLSMGM+ D+ +A+ GAT VR+GS IFG R
Sbjct: 183 AARNGLEKLSMGMSSDYPVAVGFGATHVRVGSAIFGSR 220
>gi|163796485|ref|ZP_02190445.1| hypothetical protein BAL199_10997 [alpha proteobacterium BAL199]
gi|159178335|gb|EDP62879.1| hypothetical protein BAL199_10997 [alpha proteobacterium BAL199]
Length = 227
Score = 200 bits (508), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/192 (49%), Positives = 131/192 (68%), Gaps = 1/192 (0%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNK 86
V+L+AV K+ +++ AL+ GQ +F EN++QEA+ KW LR+ + DV+L IG LQ+NK
Sbjct: 33 VTLIAVGKVQPVERVEAALAAGQRVFGENRVQEAQGKWPALRERYPDVELHLIGPLQTNK 92
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V + V LFD I+TV R K A+ L+ EM KQ R L YIQ+NTG E QK+G++P F+
Sbjct: 93 VKDAVVLFDAIQTVDRPKLAAELAREMAKQGRRLDCYIQINTGEEDQKAGVLPADADAFI 152
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT 206
CRQ++ L + GLMCIPP +P HF +L EIA+ L+ LSMGM+ D+E A+ GAT
Sbjct: 153 DSCRQEHGLPIVGLMCIPPVADDPALHFAMLREIAKRHGLSGLSMGMSGDYETAVQLGAT 212
Query: 207 SVRIGSGIFGER 218
VR+G+ IFG R
Sbjct: 213 HVRVGTAIFGAR 224
>gi|16127975|ref|NP_422539.1| hypothetical protein CC_3745 [Caulobacter crescentus CB15]
gi|221236797|ref|YP_002519234.1| pyridoxal 5'-phosphate dependent enzyme class III [Caulobacter
crescentus NA1000]
gi|13425517|gb|AAK25707.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220965970|gb|ACL97326.1| pyridoxal 5'-phosphate dependent enzyme class III [Caulobacter
crescentus NA1000]
Length = 217
Score = 199 bits (505), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 98/195 (50%), Positives = 126/195 (64%), Gaps = 2/195 (1%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
P SV+LVAVSK I L GQ +F EN++QEA ++W P R+ ++LR IG LQ
Sbjct: 22 PAGSVTLVAVSKTQPWDHIAPVLDVGQKVFGENRVQEAMERWGPHRQ--GLELRLIGPLQ 79
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
+NK E V FDVIET+ REK A +L+ E+ + + +Y+QVN G E QK+G+ P
Sbjct: 80 TNKAREAVGFFDVIETLDREKLARVLAEEVQRAGKAPRLYVQVNVGQETQKAGVAPGDAD 139
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIAS 203
F+ CR Y L +EGLMCIPP +P PHF L+ IA L KLSMGM+ DFE+AIA
Sbjct: 140 SFIGACRTTYGLTIEGLMCIPPFDQDPAPHFAQLASIAERNGLDKLSMGMSDDFEIAIAQ 199
Query: 204 GATSVRIGSGIFGER 218
GATSVR+GS +FG R
Sbjct: 200 GATSVRVGSALFGSR 214
>gi|300693595|ref|YP_003749568.1| enzyme with a tim-barrel fold protein [Ralstonia solanacearum
PSI07]
gi|299075632|emb|CBJ34928.1| Putative predicted enzyme with a tim-barrel fold protein [Ralstonia
solanacearum PSI07]
Length = 226
Score = 199 bits (505), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 135/210 (64%), Gaps = 1/210 (0%)
Query: 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69
++ I+++AI + R D+V+LVA SK V+ + I+ A+ G +F EN++QEA KKW LR
Sbjct: 12 IRKAIQHAAIDSGRRTDAVTLVAASKTVEPQHIQKAIDLGLTVFGENRVQEAVKKWPELR 71
Query: 70 -KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
+ ++L IG LQSNKV + V LFD IE+V R + A ++ E KQ R +YIQVN
Sbjct: 72 NRNPGIELHLIGPLQSNKVRQAVGLFDAIESVDRARLAQAIAEEAEKQGRDPAIYIQVNV 131
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK 188
G E QK G++P + + CR YQLNV+GLMCIPPA +P HF L IA + L
Sbjct: 132 GKEPQKGGVLPAEAPALIRACRDVYQLNVQGLMCIPPAGFDPSDHFACLRSIAEDHGLGI 191
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D+ AIA GAT VR+G+ IFG R
Sbjct: 192 LSMGMSADYRQAIAQGATHVRVGTSIFGAR 221
>gi|114571491|ref|YP_758171.1| hypothetical protein Mmar10_2952 [Maricaulis maris MCS10]
gi|114341953|gb|ABI67233.1| Protein of unknown function UPF0001 [Maricaulis maris MCS10]
Length = 225
Score = 199 bits (505), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 96/199 (48%), Positives = 133/199 (66%), Gaps = 1/199 (0%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFI 79
A RP DS+ LVAVSK +++ AL+ GQ +F EN++QEA W RK W D++LR I
Sbjct: 25 AGRPSDSIKLVAVSKRQSEERLDAALAAGQRVFGENRVQEAMAHWGERRKVWSDLELRLI 84
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G LQSNK ++ V+LFDVIET+ R K A L EM +Q R +Y+QVNTG E QK+G++
Sbjct: 85 GPLQSNKAADAVALFDVIETLDRPKLADALRREMDRQGRRPRLYVQVNTGAETQKAGVLV 144
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFEL 199
++ F+ R ++ + GLMCIPP P HF LL+ +A + + LSMGM+ D+ +
Sbjct: 145 SELPAFLTRMRDEFGFEISGLMCIPPVEQPPGLHFALLARLAADNGIGHLSMGMSADYPV 204
Query: 200 AIASGATSVRIGSGIFGER 218
A+A GATSVRIG+G+FG+R
Sbjct: 205 AVALGATSVRIGTGLFGDR 223
>gi|295691575|ref|YP_003595268.1| alanine racemase domain-containing protein [Caulobacter segnis ATCC
21756]
gi|295433478|gb|ADG12650.1| alanine racemase domain protein [Caulobacter segnis ATCC 21756]
Length = 217
Score = 198 bits (504), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/192 (52%), Positives = 127/192 (66%), Gaps = 2/192 (1%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SV+LVAVSK + I L GQ +F EN++QEA ++W R+ ++LR IG LQ+NK
Sbjct: 25 SVTLVAVSKTQPWEHIAPVLDAGQKVFGENRVQEAMERWGQRRE--GLELRLIGPLQTNK 82
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
E V+ FDVIETV REK A +L+ E+ + R +Y+QVNTG E QK+GI P + F+
Sbjct: 83 AREAVAFFDVIETVDREKLARVLAEEIQRSGRAPRLYVQVNTGEEPQKAGIAPGEADTFI 142
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT 206
CRQ Y L VEGLMCIPP +P PHF L IA + KLSMGM+ DFE+AI GAT
Sbjct: 143 AACRQTYGLAVEGLMCIPPFDTDPAPHFAQLRAIAERNGVEKLSMGMSDDFEIAIVEGAT 202
Query: 207 SVRIGSGIFGER 218
SVR+GS +FG R
Sbjct: 203 SVRVGSALFGSR 214
>gi|298293747|ref|YP_003695686.1| alanine racemase domain protein [Starkeya novella DSM 506]
gi|296930258|gb|ADH91067.1| alanine racemase domain protein [Starkeya novella DSM 506]
Length = 232
Score = 197 bits (502), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 103/220 (46%), Positives = 141/220 (64%), Gaps = 3/220 (1%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L ++L +++I ++ A R + V LVAVSK D++ I A+ GQ IF EN++QEA
Sbjct: 13 DLTSRLGEVRERIARASRDAGRKPEEVHLVAVSKTFDAEHILPAIEAGQRIFGENRVQEA 72
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK-QSRF 119
+ KW LR ++ D++L IG LQ+NKV + + LFDVI T+ R A+ L+ E K + R
Sbjct: 73 RAKWPALRADYPDIELHLIGPLQTNKVRDALGLFDVIHTLDRPSLAAALAKEFAKLEGRP 132
Query: 120 LP-VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
P + IQVNTG E QK+G+ P + F+ CR + L +EGLMCIPPA PHF LL+
Sbjct: 133 APRLLIQVNTGEEPQKAGVAPLEADAFIAECRDVHGLTIEGLMCIPPADEPAAPHFALLA 192
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+IAR L+ LSMGM+ D+E AI GAT VR+GS IFG R
Sbjct: 193 KIARRNGLSALSMGMSGDYETAIGLGATYVRVGSAIFGTR 232
>gi|91974918|ref|YP_567577.1| hypothetical protein RPD_0438 [Rhodopseudomonas palustris BisB5]
gi|91681374|gb|ABE37676.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
BisB5]
Length = 221
Score = 197 bits (501), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 132/215 (61%), Gaps = 1/215 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L +Q+I + A+R + SV+L+AVSK D+ I L+ GQ +F EN++QEAK K
Sbjct: 7 HGLAAVEQEIAQACKEARRERGSVTLIAVSKTFDADSILPVLAAGQRVFGENRVQEAKAK 66
Query: 65 WIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W L +L IG LQSNK E V+LFD I +V RE A LS + R + ++
Sbjct: 67 WPALVAGHPGTELHLIGPLQSNKAKEAVALFDAIHSVDRESLAEALSKALPLAGRAVELF 126
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+Q+NTG E QK+G+ P F+ CR+++ L + GLMCIPP P PHF L ++IAR
Sbjct: 127 VQINTGEEPQKAGVAPQDADAFLTACRERWGLTIAGLMCIPPVDEAPAPHFALTAKIARR 186
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+KLSMGM+ DF AI GAT VR+GS IFG R
Sbjct: 187 NGLSKLSMGMSADFATAIEFGATHVRVGSAIFGHR 221
>gi|323137154|ref|ZP_08072233.1| alanine racemase domain protein [Methylocystis sp. ATCC 49242]
gi|322397512|gb|EFY00035.1| alanine racemase domain protein [Methylocystis sp. ATCC 49242]
Length = 223
Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 137/223 (61%), Gaps = 1/223 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++L K I +A R V+LV V+K ++ + L G +F EN++QE
Sbjct: 1 MTIIDRLNETKASIARAATDCGRDPAEVTLVCVTKTFPAEDVVPLLDAGHRVFGENRVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW LR+++ D++L IG LQSNK E V FDVI++V REK A LS EM K R
Sbjct: 61 AMGKWPALREKYPDIELHLIGPLQSNKTQEAVETFDVIQSVDREKIAKALSEEMAKTGRR 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+++QVNTG E QK+G++P + F+ CR+KY L + GLMC+PP PHF LL++
Sbjct: 121 PRLFVQVNTGAEPQKAGVLPEEADAFIAACREKYGLEIAGLMCVPPVGEQASPHFALLAD 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
IA L +LSMGM+ D+ELAI GAT VR+GS I G R T
Sbjct: 181 IAARNGLRELSMGMSSDYELAIQLGATYVRVGSAIMGARDYST 223
>gi|300697292|ref|YP_003747953.1| predicted enzyme with a tim-barrel fold protein [Ralstonia
solanacearum CFBP2957]
gi|299074016|emb|CBJ53553.1| Putative predicted enzyme with a tim-barrel fold protein [Ralstonia
solanacearum CFBP2957]
Length = 226
Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/206 (49%), Positives = 133/206 (64%), Gaps = 1/206 (0%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR-KEW 72
I+++AI + R ++V+LVA SK V+ I+ A+ G +F EN++QEA KW LR +
Sbjct: 16 IQHAAIGSGRHANAVTLVAASKTVEPHHIQQAIDLGLTVFGENRVQEAVTKWPELRSRNA 75
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
++L IG LQSNKV + V LFD IE+V R K A ++ E KQ R +YIQVN G E
Sbjct: 76 GIELHLIGPLQSNKVRQAVGLFDAIESVDRAKLARAIAEEAEKQGRNPAIYIQVNVGKEP 135
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMG 192
QKSG++P + + CR+ YQLNV+GLMCIPPA +P HF L IA + L LSMG
Sbjct: 136 QKSGVLPAEAPALIRECREVYQLNVQGLMCIPPAGLDPCAHFACLRSIAEDHGLRALSMG 195
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D+ AIA GAT VR+GS IFG R
Sbjct: 196 MSADYLQAIAQGATHVRVGSSIFGAR 221
>gi|17548904|ref|NP_522244.1| hypothetical protein RS01766 [Ralstonia solanacearum GMI1000]
gi|17431154|emb|CAD17834.1| putative predicted enzyme with a tim-barrel fold protein [Ralstonia
solanacearum GMI1000]
Length = 226
Score = 196 bits (499), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 138/218 (63%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + + ++ I+++AI R D+V+LVA SK V+S +I+ A+ G +F EN++QEA
Sbjct: 4 NLEDNIGRIRKAIQHAAIDNGRRADAVTLVAASKTVESHRIQKAIDLGLTVFGENRVQEA 63
Query: 62 KKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KW LR + ++L IG LQSNKV + V LFDVIE+V R + A ++ E +Q
Sbjct: 64 VSKWPELRSRNPGIELHLIGPLQSNKVRQAVDLFDVIESVDRSRLARAIAEEAERQGHAP 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+YIQVN G E QK G++P + + CR YQLNV+GLMCIPPA +P HF L I
Sbjct: 124 AIYIQVNVGKEPQKGGVLPAEASALIGECRDVYQLNVQGLMCIPPAGLDPSGHFAGLRSI 183
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A + L LSMGM+ D+ AIA GAT VR+GS +FG R
Sbjct: 184 AADHGLHVLSMGMSADYPQAIAQGATHVRVGSALFGAR 221
>gi|115522420|ref|YP_779331.1| hypothetical protein RPE_0392 [Rhodopseudomonas palustris BisA53]
gi|115516367|gb|ABJ04351.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
BisA53]
Length = 221
Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 134/218 (61%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L ++ I + A+R + VSL+AVSK ++ I L GQ F EN++QEA
Sbjct: 4 AVATGLSAVERAIARACADARRDRGEVSLIAVSKTFPAEAIVPVLQAGQRAFGENRVQEA 63
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K KW LR+ + D L IG LQSNK + +LFD I +V R+ A L+ E+ +R +
Sbjct: 64 KAKWPALRQSYPDTVLHLIGPLQSNKAKDAAALFDAIHSVDRDSLAQALAKELPLHNRLI 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+++Q+NTG E QK+G+ P + DF+ CR+ + L + GLMCIPP P PHF L ++I
Sbjct: 124 ELFVQLNTGEEPQKAGVAPAEADDFLKRCREHHGLEIAGLMCIPPVDEAPAPHFALTAKI 183
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A+ LTKLSMGM+ DF AI GAT +R+GS IFG R
Sbjct: 184 AKRNGLTKLSMGMSADFATAIQFGATHIRVGSAIFGHR 221
>gi|49474718|ref|YP_032760.1| hypothetical protein BQ12320 [Bartonella quintana str. Toulouse]
gi|49240222|emb|CAF26691.1| hypothetical protein BQ12320 [Bartonella quintana str. Toulouse]
Length = 229
Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/197 (51%), Positives = 138/197 (70%), Gaps = 1/197 (0%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIGS 81
RP + V L+AVSK V + I L GQ +FAEN++QEA +KW LR+++ ++L IG
Sbjct: 31 RPLEEVQLIAVSKTVSADHIFPLLQAGQSVFAENRVQEAAEKWPRLRQQFKFIELHLIGP 90
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQSNK +E V +FDVI+TV REK A LS+EM KQ R LP Y+QVN G E+QKSGI P +
Sbjct: 91 LQSNKTAEAVKIFDVIQTVDREKIAKSLSIEMQKQKRILPCYVQVNIGLELQKSGIPPQE 150
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI 201
FV C+ Y L++ GLM IPP NP P+F LL+++A++ L KLSMGM+ DF++A+
Sbjct: 151 VIPFVAQCKNHYGLDIIGLMAIPPVKENPGPYFALLAKLAKKAGLPKLSMGMSNDFKIAL 210
Query: 202 ASGATSVRIGSGIFGER 218
G+ ++RIGS +FG+R
Sbjct: 211 QFGSNTLRIGSALFGKR 227
>gi|316931734|ref|YP_004106716.1| alanine racemase domain-containing protein [Rhodopseudomonas
palustris DX-1]
gi|315599448|gb|ADU41983.1| alanine racemase domain protein [Rhodopseudomonas palustris DX-1]
Length = 219
Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/207 (45%), Positives = 135/207 (65%), Gaps = 1/207 (0%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I + A+R + V+L+AVSK ++ IR L+ GQ +F EN++QEAK KW L +E+
Sbjct: 13 EIARACADARRDRSEVTLIAVSKTFEADAIRPVLAAGQRVFGENRVQEAKGKWPALVEEY 72
Query: 73 -DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
+L IG LQSNK + V+LFD I +V R+ LS + + R L +++Q+NTG E
Sbjct: 73 PGTELHLIGPLQSNKAKDAVALFDAIHSVDRDSLCEALSKALPQAGRRLDLFVQINTGEE 132
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSM 191
QK+GI P+ F++ C++++ L + GLMCIPP P PHF L ++IAR L+KLSM
Sbjct: 133 PQKAGIAPHDADAFLVACQERWGLTICGLMCIPPVDEAPAPHFALCAKIARRNGLSKLSM 192
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DF++AI GAT VR+GS IFG R
Sbjct: 193 GMSADFDIAIQFGATHVRVGSAIFGHR 219
>gi|312115572|ref|YP_004013168.1| alanine racemase domain protein [Rhodomicrobium vannielii ATCC
17100]
gi|311220701|gb|ADP72069.1| alanine racemase domain protein [Rhodomicrobium vannielii ATCC
17100]
Length = 229
Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 138/209 (66%), Gaps = 1/209 (0%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
++++ +A A R SV LVAV+K D++ IR L G V+F EN++QEA +KW PLR+
Sbjct: 21 RERVWRAAQNAGRDPASVKLVAVTKTFDAEHIRPVLRQGHVLFGENRIQEAMRKWPPLRE 80
Query: 71 EWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
E+ +L IG +Q+NK E V+ FD IETV R K A+ L+ E+ KQ R +++QVN G
Sbjct: 81 EFPRAELHVIGPIQTNKAREAVAFFDCIETVDRPKLAAALAQEIQKQGRAPKLFVQVNIG 140
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKL 189
E QK+GI P++ FV C ++Y L++ GLMCIPP +P P F ++ + +E L L
Sbjct: 141 EEPQKAGIAPDEAAAFVRQCEREYGLSIAGLMCIPPFDDDPVPFFEKMAALRKELGLLDL 200
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMGM+ DFE AIA+GAT VR+GS IFG R
Sbjct: 201 SMGMSGDFEAAIAAGATLVRVGSAIFGVR 229
>gi|207724413|ref|YP_002254810.1| predicted enzyme with a tim-barrel fold protein [Ralstonia
solanacearum MolK2]
gi|206589634|emb|CAQ36595.1| predicted enzyme with a tim-barrel fold protein [Ralstonia
solanacearum MolK2]
Length = 226
Score = 194 bits (494), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 136/217 (62%), Gaps = 1/217 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + + I+++AI + R ++V+LVA SK V+ I+ A+ G +F EN++QEA
Sbjct: 5 LEDNIGRITKAIQHAAIDSGRHANAVTLVAASKTVEPHHIQQAIDLGLTVFGENRVQEAV 64
Query: 63 KKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW LR + ++L IG LQSNKV + V LFD IE+V R K A ++ E KQ
Sbjct: 65 TKWPELRSRNTGIELHLIGPLQSNKVRQAVGLFDAIESVDRAKLARAIAEEAEKQGHDPA 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+YIQVN G E QKSG++P + + CR+ YQLNV+GLMCIPPA +P HF L IA
Sbjct: 125 IYIQVNVGKEPQKSGVLPAEAPALIRECREVYQLNVQGLMCIPPAGLDPCAHFACLRSIA 184
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D+ AIA GAT VR+GS IFG R
Sbjct: 185 EDHGLRALSMGMSADYLQAIAQGATHVRVGSSIFGAR 221
>gi|90421806|ref|YP_530176.1| hypothetical protein RPC_0282 [Rhodopseudomonas palustris BisB18]
gi|90103820|gb|ABD85857.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
BisB18]
Length = 219
Score = 194 bits (494), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 132/219 (60%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS L +++I + A R + +V+L+AVSK ++ I L GQ +F EN++QE
Sbjct: 1 MSEAAGLAEVERQIARACADAGRERAAVTLIAVSKTFEADGITPVLEAGQRVFGENRVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
AK KW L + V L IG LQSNK E V+LFD I +V R L+ E+ Q R
Sbjct: 61 AKGKWPALTAAYPGVALHLIGPLQSNKAKEAVALFDAIHSVDRPSLCQALAKEIAAQGRA 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ +++Q+NTG E QK+G++P + F+ CR Y LNV GLMCIPP P PHF L ++
Sbjct: 121 VELFVQLNTGEEPQKAGVVPAEADAFIKACRDTYGLNVSGLMCIPPVDQAPAPHFALTAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IA L KLSMGM+ DF +AI GAT VR+GS IFG R
Sbjct: 181 IAARNGLQKLSMGMSADFAVAIQFGATHVRVGSAIFGHR 219
>gi|92115728|ref|YP_575457.1| hypothetical protein Nham_0096 [Nitrobacter hamburgensis X14]
gi|91798622|gb|ABE60997.1| Protein of unknown function UPF0001 [Nitrobacter hamburgensis X14]
Length = 225
Score = 194 bits (493), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 92/195 (47%), Positives = 125/195 (64%), Gaps = 1/195 (0%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQ 83
+ SV+LVAVSK D+ I ++ GQ +F EN++QEA++KW L + L IG LQ
Sbjct: 31 RSSVTLVAVSKTFDTDAIAPVIAAGQQVFGENRVQEAQRKWPELMAAHPGIALHLIGPLQ 90
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
SNK + V LFD I +V R + L+ E+ Q+R +++Q+NTG E QK+G+ P+
Sbjct: 91 SNKAKDAVGLFDAIHSVDRPSICAALAKEIASQNRRPDLFVQINTGEEPQKAGVAPSDAD 150
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIAS 203
F+ CR Y L + GLMCIPPA P PHF L ++IA+ LT+LSMGM+ DF +AIA
Sbjct: 151 AFIAACRDTYGLTISGLMCIPPADDAPAPHFALTAKIAKRNGLTQLSMGMSADFAIAIAL 210
Query: 204 GATSVRIGSGIFGER 218
GAT VR+GS IFG R
Sbjct: 211 GATHVRVGSAIFGTR 225
>gi|170739698|ref|YP_001768353.1| alanine racemase domain-containing protein [Methylobacterium sp.
4-46]
gi|168193972|gb|ACA15919.1| alanine racemase domain protein [Methylobacterium sp. 4-46]
Length = 227
Score = 193 bits (491), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/212 (47%), Positives = 130/212 (61%), Gaps = 1/212 (0%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+ +I +A +R ++V+LVAVSK V ++ I AL GQ +F EN +QEA+ KW LR
Sbjct: 15 RAEIARAARDHERDPNAVALVAVSKTVPAEGIVPALEAGQRLFGENYVQEARAKWPALRA 74
Query: 71 EW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
+ DV+L IG LQSNK E V LFDVI ++ R A+ LS E+ + R + +QVNTG
Sbjct: 75 RYPDVELHMIGPLQSNKAREAVELFDVIHSLDRSSLAASLSREIARTGRRPRLLVQVNTG 134
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKL 189
E QK G+ P F+ CR + L +EGLMCIPPA P HF LL+ IA L L
Sbjct: 135 DEPQKGGVSPAAADAFLAECRDAHGLTIEGLMCIPPAEDPPSAHFALLARIAARHGLAVL 194
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
SMGM+ D+ AI GAT VR+GS IFG RP +
Sbjct: 195 SMGMSADYPAAIQMGATHVRVGSAIFGARPAK 226
>gi|209883515|ref|YP_002287372.1| pyridoxal phosphate enzyme, YggS family [Oligotropha
carboxidovorans OM5]
gi|209871711|gb|ACI91507.1| pyridoxal phosphate enzyme, YggS family [Oligotropha
carboxidovorans OM5]
Length = 229
Score = 192 bits (489), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 95/209 (45%), Positives = 130/209 (62%), Gaps = 1/209 (0%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+++I + A R + SV L+AVSK D+ I ++ GQ +F EN++QEAK KW PL++
Sbjct: 21 EREIARACADAGRDRGSVELIAVSKTFDADAISPVIAAGQRVFGENRVQEAKAKWPPLKE 80
Query: 71 E-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
D++L IG LQSNK E V LFD I +V R LS E+ + R ++ Q+NTG
Sbjct: 81 ATLDIKLHLIGPLQSNKAREAVMLFDAIHSVDRASLCEALSKEIKSRDRHPLLFAQINTG 140
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKL 189
E QK+G+ P F+ CR++Y L + GLMCIPPA P PHF L ++IA L L
Sbjct: 141 EEPQKAGVAPQDADAFLAACRERYGLTISGLMCIPPAEEAPAPHFALTAKIAERNGLKLL 200
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMGM+ DF +AI GAT +R+GS IFG+R
Sbjct: 201 SMGMSADFAVAIQFGATHIRVGSAIFGKR 229
>gi|197106974|ref|YP_002132351.1| predicted enzyme with a TIM-barrel fold [Phenylobacterium zucineum
HLK1]
gi|196480394|gb|ACG79922.1| predicted enzyme with a TIM-barrel fold [Phenylobacterium zucineum
HLK1]
Length = 220
Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/206 (49%), Positives = 130/206 (63%), Gaps = 2/206 (0%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I +A R V+LVAVSK + I L+ GQ +F EN++QEA +W R E
Sbjct: 14 RIARAAQACGRDPAEVTLVAVSKQQPWEAIEPVLAAGQKVFGENRVQEAMARW-EGRAE- 71
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
+ L IG LQ+NK E V+ FDVIE++ R K A L+ ++ KQ R +Y+QVNTG E
Sbjct: 72 GLTLHLIGPLQTNKAKEAVAFFDVIESLDRGKLARALAEQVQKQGRTPRLYVQVNTGEEP 131
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMG 192
QK+G++P + F+ CR Y L VEGLMCIPPA P PHF LL++IA L KLSMG
Sbjct: 132 QKAGVVPAEADGFIAACRGDYGLQVEGLMCIPPAAEPPGPHFALLAKIAARNGLAKLSMG 191
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ DFE AI GATSVR+GS +FG R
Sbjct: 192 MSDDFETAIRFGATSVRVGSAVFGAR 217
>gi|220921031|ref|YP_002496332.1| alanine racemase domain-containing protein [Methylobacterium
nodulans ORS 2060]
gi|219945637|gb|ACL56029.1| alanine racemase domain protein [Methylobacterium nodulans ORS
2060]
Length = 227
Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 128/207 (61%), Gaps = 1/207 (0%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I +A+ +R S++L+AVSK V + I AL GQ +F EN +QEAK KW LR+ +
Sbjct: 17 EIARAALDHERDPASIALIAVSKTVPGEGILPALEAGQRLFGENYVQEAKAKWPLLRERY 76
Query: 73 -DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
DV+L IG LQSNK E V LFDVI ++ R A+ L+ EM + R + +QVNTG E
Sbjct: 77 PDVELHMIGPLQSNKAREAVELFDVIHSLDRPSLAAALAKEMQRTGRRPRLLVQVNTGDE 136
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSM 191
QK G+ P + F+ CR + L + GLMCIPPA P PHF LL+ IA L LSM
Sbjct: 137 PQKGGVSPAEVDAFLAACRDTHGLTIAGLMCIPPAADPPSPHFALLARIAARHGLGLLSM 196
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DF AI GAT VR+G+ IFG R
Sbjct: 197 GMSSDFAAAIQMGATHVRVGTAIFGAR 223
>gi|83944980|ref|ZP_00957346.1| hypothetical protein OA2633_10134 [Oceanicaulis alexandrii
HTCC2633]
gi|83851762|gb|EAP89617.1| hypothetical protein OA2633_10134 [Oceanicaulis alexandrii
HTCC2633]
Length = 231
Score = 192 bits (488), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/207 (48%), Positives = 135/207 (65%), Gaps = 1/207 (0%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I +A A R D + LVAVSK+ ++ L+ GQ IF EN++QEA+K+W R+ +
Sbjct: 22 RIARAAKQAGRSADEIDLVAVSKVQPDDRVDAMLAAGQRIFGENRVQEAQKRWAGRRETY 81
Query: 73 -DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
D+QLR IG LQSNK + +LFDVIET+ REK A L M K R +Y+QVNTG E
Sbjct: 82 PDLQLRLIGPLQSNKADDACALFDVIETLDREKLAGALVKAMEKTGRRPALYVQVNTGDE 141
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSM 191
QK+G+ N+ +FV CR+ L VEGLMCIPP PHF LL+++A + +LSM
Sbjct: 142 PQKAGLAVNECVEFVRHCRRDLDLPVEGLMCIPPVEEPAAPHFALLAKLAARADVARLSM 201
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DFEL + GATS+R+GS +FGER
Sbjct: 202 GMSSDFELGVQLGATSMRVGSALFGER 228
>gi|75674288|ref|YP_316709.1| hypothetical protein Nwi_0089 [Nitrobacter winogradskyi Nb-255]
gi|74419158|gb|ABA03357.1| Protein of unknown function UPF0001 [Nitrobacter winogradskyi
Nb-255]
Length = 224
Score = 192 bits (488), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 134/215 (62%), Gaps = 1/215 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N L + +I + A+R + +V+LVAVSK D+ I ++ GQ +F EN++QEA++K
Sbjct: 10 NGLASVEAEIVRACRDARRERSTVTLVAVSKTFDADAITPVIAAGQRVFGENRVQEAQRK 69
Query: 65 WIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W L + L IG LQSNK E V+LFD I +V R L+ E+ +Q+R ++
Sbjct: 70 WPELIAAHPGLALHLIGPLQSNKAKEAVALFDAIHSVDRVSLCEALAKEIDRQNRRPSLF 129
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+Q+NTG E QK+G+ P+ DF+ CR + L + GLMCIPP P PHF L ++IAR
Sbjct: 130 VQINTGEEPQKAGVSPSNADDFIARCRDTHGLTISGLMCIPPMDDAPAPHFALTAKIARR 189
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +LSMGM+ DF +AIA GAT +R+GS IFG R
Sbjct: 190 NGIKQLSMGMSADFAIAIALGATHIRVGSAIFGTR 224
>gi|182677225|ref|YP_001831371.1| alanine racemase domain-containing protein [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182633108|gb|ACB93882.1| alanine racemase domain protein [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 230
Score = 191 bits (486), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/214 (48%), Positives = 134/214 (62%), Gaps = 1/214 (0%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L V + I +A A R SV+LV VSK ++ I LS G+ IF EN++QEA KW
Sbjct: 17 RLAVIRGHIARAARDAGRAPSSVNLVCVSKTFPAEAIEPVLSAGERIFGENRVQEAMDKW 76
Query: 66 IPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
LR + V+L IG LQSNK E V FD IETV REK A ++ E+ K + +YI
Sbjct: 77 PALRPAYPGVELHLIGPLQSNKAREAVGFFDCIETVDREKIARAIAEEIQKSGKHPRLYI 136
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVNTG E QK+G++P + F+ C++++ L + GLMCIPP PHF LL++IA
Sbjct: 137 QVNTGAEPQKAGVLPQEADSFIEQCQKEFGLVISGLMCIPPVDDQASPHFALLNKIAERH 196
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LT LSMGM+ D+ELAI GAT VRIGS +FG R
Sbjct: 197 GLTNLSMGMSADYELAIQLGATHVRIGSALFGAR 230
>gi|27375734|ref|NP_767263.1| hypothetical protein bll0623 [Bradyrhizobium japonicum USDA 110]
gi|27348872|dbj|BAC45888.1| bll0623 [Bradyrhizobium japonicum USDA 110]
Length = 229
Score = 191 bits (485), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 128/215 (59%), Gaps = 1/215 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N L + +I + A+R + SV+L+AVSK D+ I ++ GQ +F EN++QEAK K
Sbjct: 15 NALAAVEAEIARACKDARRDRASVTLIAVSKTFDADAITPVIAAGQRVFGENRVQEAKGK 74
Query: 65 WIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W L + D+ L IG LQSNK E V+LFD I +V R L+ E+ Q + ++
Sbjct: 75 WPALTSVYPDIALHLIGPLQSNKAKEAVALFDAIHSVDRPSICQALAKEIESQKKHPQLF 134
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+Q+NTG E QK+G+ P + F+ CR Y L + GLMCIPP P HF L ++IA
Sbjct: 135 VQINTGEEPQKAGVAPGEADAFLASCRDTYGLTISGLMCIPPVDEPPAAHFALTAKIAAR 194
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LT LSMGM+ DF AI GAT VR+GS IFG R
Sbjct: 195 NGLTNLSMGMSADFATAIMLGATHVRVGSAIFGHR 229
>gi|148251792|ref|YP_001236377.1| hypothetical protein BBta_0174 [Bradyrhizobium sp. BTAi1]
gi|146403965|gb|ABQ32471.1| putative exported protein of unknown function [Bradyrhizobium sp.
BTAi1]
Length = 228
Score = 191 bits (484), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 128/213 (60%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +Q+I + AKR + SV+L+AVSK + I ++ GQ +F EN++QEAK KW
Sbjct: 16 LTAVEQEILRACRDAKRERASVTLIAVSKTFAADAIEPVIAAGQRVFGENRVQEAKGKWP 75
Query: 67 PL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L + L IG LQSNK E V+LFD I +V R + L+ E+ Q+R +++Q
Sbjct: 76 ALMAAHPGLSLHLIGPLQSNKAKEAVALFDAIHSVDRPSLCAALAKEIAAQNRHPQLFVQ 135
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
+NTG E QK+GI P + FV CR+ Y L + GLMCIPP P PHF L ++IA
Sbjct: 136 INTGEEPQKAGIAPGEADAFVAACRKDYGLEISGLMCIPPVDEAPGPHFALTAKIAARNG 195
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DF AI GAT VR+GS IFG R
Sbjct: 196 LANLSMGMSADFATAIQFGATHVRVGSAIFGHR 228
>gi|85714105|ref|ZP_01045094.1| hypothetical protein NB311A_08113 [Nitrobacter sp. Nb-311A]
gi|85699231|gb|EAQ37099.1| hypothetical protein NB311A_08113 [Nitrobacter sp. Nb-311A]
Length = 224
Score = 191 bits (484), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 92/193 (47%), Positives = 125/193 (64%), Gaps = 1/193 (0%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSN 85
SV+LVAVSK D++ I ++ GQ +F EN++QEA++KW L + L IG LQSN
Sbjct: 32 SVTLVAVSKTFDAEAITPVIAAGQRVFGENRVQEAQRKWPELIAAHPGIVLHLIGPLQSN 91
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
K + V+LFD I +V R L+ E+ +Q+R +++Q+NTG E QK+G++P DF
Sbjct: 92 KAKDAVALFDAIHSVDRVSLCEALAKEIDRQNRRPALFVQINTGEEPQKAGVVPADADDF 151
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA 205
+ CR Y L + GLMCIPP P PHF L ++IAR L +LSMGM+ DF +AIA GA
Sbjct: 152 IARCRDTYGLTISGLMCIPPVDEAPAPHFALTAKIARRNGLEQLSMGMSADFAVAIALGA 211
Query: 206 TSVRIGSGIFGER 218
T VR+GS IFG R
Sbjct: 212 THVRVGSAIFGTR 224
>gi|240138136|ref|YP_002962608.1| putative enzyme with PLP-binding domain, putative alanine racemase
[Methylobacterium extorquens AM1]
gi|240008105|gb|ACS39331.1| putative enzyme with PLP-binding domain, putative alanine racemase
[Methylobacterium extorquens AM1]
Length = 246
Score = 190 bits (483), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 132/217 (60%), Gaps = 1/217 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + I +A +R SV LVAVSK V ++ I AL GQ IF EN +QE+K KW
Sbjct: 30 LAEVRASIRRAAEDNERDPASVHLVAVSKTVPAEGILPALEAGQRIFGENYVQESKAKWP 89
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ + DV+L +G LQSNK E V LFDVI ++ R A+ L+ E+ + R + IQ
Sbjct: 90 ALRERFPDVELHLVGPLQSNKAREAVELFDVIHSLDRLSLAAALAKEIERSGRAPKLLIQ 149
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G+ P+Q + CR+ + L + GLMCIPPA P PHF LL+ IA
Sbjct: 150 VNTGDETQKAGVSPDQVDVLLSECRETHNLAIHGLMCIPPADDPPSPHFALLARIAERHG 209
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L LSMGM+ DF AI GAT VR+G+ IFG R +T
Sbjct: 210 LPILSMGMSADFPAAIQMGATHVRVGTAIFGRRTKRT 246
>gi|39933362|ref|NP_945638.1| hypothetical protein RPA0285 [Rhodopseudomonas palustris CGA009]
gi|39652987|emb|CAE25729.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
CGA009]
Length = 219
Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 128/199 (64%), Gaps = 1/199 (0%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFI 79
A+R + V+L+AVSK +++ IR LS GQ +F EN++QEAK KW L E+ +L I
Sbjct: 21 ARRERSEVTLIAVSKTFEAEAIRPVLSAGQRVFGENRVQEAKGKWPVLVDEYPGTELHLI 80
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G LQSNK + ++LFD I +V R+ LS + + R + +++Q+NTG E QK+GI P
Sbjct: 81 GPLQSNKAKDAIALFDAIHSVDRDSLCEALSKVLPQAGRKVELFVQINTGEEPQKAGIAP 140
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFEL 199
F++ CR+++ L + GLMCIPP P PHF L ++IA+ L KLSMGM+ DF
Sbjct: 141 QDADAFLVACRERWGLTISGLMCIPPVDEAPAPHFALSAKIAKRNGLVKLSMGMSADFAT 200
Query: 200 AIASGATSVRIGSGIFGER 218
AI GAT VR+GS IFG R
Sbjct: 201 AIQFGATHVRVGSAIFGHR 219
>gi|218529832|ref|YP_002420648.1| alanine racemase domain protein [Methylobacterium chloromethanicum
CM4]
gi|218522135|gb|ACK82720.1| alanine racemase domain protein [Methylobacterium chloromethanicum
CM4]
Length = 247
Score = 190 bits (482), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/213 (47%), Positives = 130/213 (61%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + I +A +R SV LVAVSK V ++ I AL GQ IF EN +QE+K KW
Sbjct: 31 LAEVRASIRRAAEDNERDPASVHLVAVSKTVPAEGILPALESGQRIFGENYVQESKAKWP 90
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ + DV+L +G LQSNK E V LFDVI ++ R A+ L+ E+ + R + IQ
Sbjct: 91 ALRERFPDVELHLVGPLQSNKAREAVELFDVIHSLDRLSLAAALAKEIERSGRAPKLLIQ 150
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G+ P+Q + CR+ + L + GLMCIPPA P PHF LL+ IA
Sbjct: 151 VNTGDETQKAGVSPDQVDVLLSECRETHNLAIHGLMCIPPAEDPPSPHFALLARIAERHG 210
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DF AI GAT VR+G+ IFG R
Sbjct: 211 LPILSMGMSADFPAAIQMGATHVRVGTAIFGRR 243
>gi|254560698|ref|YP_003067793.1| alanine racemase [Methylobacterium extorquens DM4]
gi|254267976|emb|CAX23844.1| putative enzyme with PLP-binding domain, putative alanine racemase
[Methylobacterium extorquens DM4]
Length = 246
Score = 190 bits (482), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/213 (47%), Positives = 130/213 (61%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + I +A +R SV LVAVSK V ++ I AL GQ IF EN +QE+K KW
Sbjct: 30 LAEVRASIRRAAEDNERDPASVHLVAVSKTVPAEGILPALEAGQRIFGENYVQESKAKWP 89
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ + DV+L +G LQSNK E V LFDVI ++ R A+ L+ E+ + R + IQ
Sbjct: 90 GLRERFPDVELHLVGPLQSNKAREAVELFDVIHSLDRLSLAAALAKEIERSGRAPKLLIQ 149
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G+ P+Q + CR+ + L + GLMCIPPA P PHF LL+ IA
Sbjct: 150 VNTGDETQKAGVSPDQVDVLLSECRETHNLAIHGLMCIPPAEDPPSPHFALLARIAERHG 209
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DF AI GAT VR+G+ IFG R
Sbjct: 210 LPILSMGMSADFPAAIQMGATHVRVGTAIFGRR 242
>gi|296445413|ref|ZP_06887371.1| alanine racemase domain protein [Methylosinus trichosporium OB3b]
gi|296257174|gb|EFH04243.1| alanine racemase domain protein [Methylosinus trichosporium OB3b]
Length = 223
Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 133/218 (61%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++L+ + I A R ++LV VSK + + L G +F ENK+QE
Sbjct: 1 MTIVDRLKAAEHAIAERARDCGRDPAEITLVCVSKTFPGEAVIPLLEAGHRVFGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+ KW PLR+ + V+L IG LQSNK E V FDVIE+V R K A ++ E+ +Q R
Sbjct: 61 ARAKWGPLRERFPVELHLIGPLQSNKAREAVETFDVIESVDRPKIAEAIAAEIARQGRRP 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ +QVNTG E QK+G+ P + F+ CR+++ L + GLMC+PP PHF LL+ I
Sbjct: 121 RLLVQVNTGEEPQKAGVRPQEADAFIKQCREQFGLEIAGLMCVPPVDQQASPHFALLAAI 180
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
AR L LSMGM+ D+ELAI GAT VRIGS I GER
Sbjct: 181 ARRNGLKDLSMGMSADYELAIQLGATHVRIGSAIMGER 218
>gi|23016024|ref|ZP_00055785.1| COG0325: Predicted enzyme with a TIM-barrel fold [Magnetospirillum
magnetotacticum MS-1]
Length = 190
Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/189 (50%), Positives = 129/189 (68%), Gaps = 1/189 (0%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVSE 89
+AVSK ++ + AL+ GQ +F EN++QEAK K+ LR + D++L IG LQ+NKV +
Sbjct: 1 MAVSKTHSAEAVAQALAAGQRVFGENRVQEAKAKFPDLRGGYPDLELHLIGPLQTNKVRD 60
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
++LFDVIETV R K A L+ EM + R + IQVNTG E QK+G+ P+Q V +C
Sbjct: 61 AIALFDVIETVDRPKLARALADEMERTGRRPRILIQVNTGREAQKAGVDPDQLDAMVAIC 120
Query: 150 RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVR 209
R +Y+L + GLMCIPPA +P PHF LL+++AR L +SMGM+ DFE AI GAT VR
Sbjct: 121 RNEYKLPLAGLMCIPPAEDDPAPHFRLLADMARRHGLDVISMGMSGDFETAITEGATHVR 180
Query: 210 IGSGIFGER 218
+GS IFG R
Sbjct: 181 VGSAIFGHR 189
>gi|192288719|ref|YP_001989324.1| alanine racemase domain protein [Rhodopseudomonas palustris TIE-1]
gi|192282468|gb|ACE98848.1| alanine racemase domain protein [Rhodopseudomonas palustris TIE-1]
Length = 219
Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 126/199 (63%), Gaps = 1/199 (0%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFI 79
A+R + V+L+AVSK +++ IR LS GQ +F EN++QEAK KW L E+ +L I
Sbjct: 21 ARRERSEVTLIAVSKTFEAEAIRPVLSAGQRVFGENRVQEAKGKWPALVDEYPGTELHLI 80
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G LQSNK + V LF I +V R+ LS + + R + +++Q+NTG E QK+GI P
Sbjct: 81 GPLQSNKAKDAVGLFGAIHSVDRDSLCEALSKVLPQAGRKVELFVQINTGEEPQKAGIAP 140
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFEL 199
F++ CR+++ L + GLMCIPP P PHF L ++IA+ L KLSMGM+ DF
Sbjct: 141 QDADAFLVACRERWGLTISGLMCIPPVDEAPAPHFALCAKIAKRNGLAKLSMGMSADFAT 200
Query: 200 AIASGATSVRIGSGIFGER 218
AI GAT VR+GS IFG R
Sbjct: 201 AIQFGATHVRVGSAIFGHR 219
>gi|188580915|ref|YP_001924360.1| alanine racemase domain protein [Methylobacterium populi BJ001]
gi|179344413|gb|ACB79825.1| alanine racemase domain protein [Methylobacterium populi BJ001]
Length = 244
Score = 188 bits (478), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 98/213 (46%), Positives = 131/213 (61%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +I +A +R V LVAVSK V ++ I AL+ GQ +F EN +QE+K KW
Sbjct: 28 LAEVRAQIRRAAEDNERDPGGVHLVAVSKTVPAEGILPALTAGQRLFGENYVQESKAKWP 87
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L+ + DV+L +G LQSNK E V LFDVI ++ R A+ L+ E+ + R + IQ
Sbjct: 88 ALKARFPDVELHLVGPLQSNKAREAVELFDVIHSLDRLSLAAALAKEIERSGRAPKLLIQ 147
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G+ P+Q + CR+ + L + GLMCIPPA P PHF LL+ IA
Sbjct: 148 VNTGDEAQKAGVAPDQVDVLLSECRETHGLAIHGLMCIPPAEDPPSPHFALLARIAERHG 207
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ LSMGM+ DF AI GAT VR+G+ IFG R
Sbjct: 208 LSMLSMGMSADFPAAIQMGATHVRVGTAIFGRR 240
>gi|163851005|ref|YP_001639048.1| alanine racemase domain-containing protein [Methylobacterium
extorquens PA1]
gi|163662610|gb|ABY29977.1| alanine racemase domain protein [Methylobacterium extorquens PA1]
Length = 247
Score = 188 bits (478), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 130/213 (61%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + I +A +R SV LVAVSK V ++ I AL GQ IF EN +QE+K KW
Sbjct: 31 LAEVRTSIRRAAEDNERDPASVHLVAVSKTVPAEGILPALESGQRIFGENYVQESKAKWP 90
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ + DV+L +G LQSNK E V LFDVI ++ R A+ L+ E+ + R + IQ
Sbjct: 91 ALRERFPDVELHLVGPLQSNKAREAVELFDVIHSLDRLSLAAALAKEIERSGRAPKLLIQ 150
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G+ P+Q + CR+ + L + GLMCIPPA P PHF LL+ IA
Sbjct: 151 VNTGDETQKAGVSPDQVDVLLSECRETHNLAIHGLMCIPPAEDPPSPHFALLARIAERHG 210
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DF AI GA+ VR+G+ IFG R
Sbjct: 211 LPILSMGMSADFPAAIQMGASHVRVGTAIFGRR 243
>gi|329847397|ref|ZP_08262425.1| Alanine racemase domain protein [Asticcacaulis biprosthecum C19]
gi|328842460|gb|EGF92029.1| Alanine racemase domain protein [Asticcacaulis biprosthecum C19]
Length = 226
Score = 188 bits (477), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 96/208 (46%), Positives = 126/208 (60%), Gaps = 1/208 (0%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
++ + +A RP S L AVSK + I L G F EN++QEA+ +W P+R +
Sbjct: 19 DQMHKALAVAGRPAGSAFLTAVSKTQPWEVIAPVLKAGHRRFGENRVQEARDRWSPVRGD 78
Query: 72 W-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
W ++LR IG LQSNK +E V+ FDVIETV R K A L+ E+ KQ R Y+QVN G
Sbjct: 79 WPGLELRLIGPLQSNKAAEAVAFFDVIETVDRSKIARALADEIQKQGRRPVTYVQVNIGE 138
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLS 190
E QK+G++P + F+ CR L V GLMCIPP G P+F LL +IA + LS
Sbjct: 139 EDQKAGVLPAEADAFIRACRDDCGLEVGGLMCIPPVEGPRGPYFGLLRKIAERNGVAHLS 198
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGM+ DFE A+A GA +R+GS IFG R
Sbjct: 199 MGMSDDFETALAFGANEIRVGSAIFGAR 226
>gi|163745433|ref|ZP_02152793.1| alanine racemase domain protein [Oceanibulbus indolifex HEL-45]
gi|161382251|gb|EDQ06660.1| alanine racemase domain protein [Oceanibulbus indolifex HEL-45]
Length = 217
Score = 187 bits (476), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 101/213 (47%), Positives = 131/213 (61%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K +I + A R SV L+AVSK+ ++R L G IF EN++QEA+ KW
Sbjct: 3 LSDIKNRIAKAEADAGRAAGSVKLIAVSKVQPDARVRAVLDEGHRIFGENRVQEAEGKWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+E+ DV+L IG LQSNKV + + L D I TV R K A ++ + R ++IQ
Sbjct: 63 GFREEFADVELHLIGPLQSNKVRQAIELADAIHTVDRPKLAKTIARLAEELGRCPDLFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G+MP + DF+ CR L ++GLMCIPP P HF LL++IA
Sbjct: 123 VNTGEEDQKAGVMPREADDFIAECR-ALDLPIKGLMCIPPVDEAPSLHFALLAKIAARND 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 182 LSGLSMGMSGDFEQAIALGATHVRVGSAIFGER 214
>gi|146337353|ref|YP_001202401.1| putative signal peptide [Bradyrhizobium sp. ORS278]
gi|146190159|emb|CAL74151.1| conserved hypothetical protein; putative signal peptide
[Bradyrhizobium sp. ORS278]
Length = 227
Score = 187 bits (476), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 94/215 (43%), Positives = 127/215 (59%), Gaps = 1/215 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L +Q+I+ + AKR + +V+L+AVSK + I + GQ +F EN++QEAK K
Sbjct: 13 SALAAVEQEIQRACSDAKRDRSAVTLIAVSKTFAADAIEPVILAGQRVFGENRVQEAKGK 72
Query: 65 W-IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W + + + L IG LQSNK E V+LF I +V R S L+ E+ Q R ++
Sbjct: 73 WPVMMAAHPGLSLHLIGPLQSNKAKEAVALFHAIHSVDRPSLCSALAKEIGAQGRHPQLF 132
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+Q+NTG E QK+GI P F+ CR+ Y L + GLMCIPP P PHF L ++IA
Sbjct: 133 VQINTGEEPQKAGIAPGDADAFIAACRRDYGLEISGLMCIPPVDEAPGPHFALTAKIAAR 192
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DF AI GAT VR+GS IFG R
Sbjct: 193 NGLANLSMGMSADFAAAIQFGATHVRVGSAIFGHR 227
>gi|296534868|ref|ZP_06897198.1| YggS family pyridoxal phosphate enzyme [Roseomonas cervicalis ATCC
49957]
gi|296264804|gb|EFH11099.1| YggS family pyridoxal phosphate enzyme [Roseomonas cervicalis ATCC
49957]
Length = 269
Score = 187 bits (475), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 101/218 (46%), Positives = 138/218 (63%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L+ + +I ++A A RP SV LVAVSK + + AL+ GQ +F EN++QEA
Sbjct: 49 SIADNLKRIQDRIASAAARAGRPAGSVRLVAVSKFHPADSVAEALAAGQALFGENRVQEA 108
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ LR D++L IG+LQ+NK + V + DVIE++ R K A+ L+ M +++R
Sbjct: 109 AGKFPGLRAAHPDLRLHLIGALQTNKARDAVRIADVIESLDRPKLAAALAEAMRREARRP 168
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ +QVN G E QK+GI P DFV CR+ + L VEGLMCIPPA +P PHF +
Sbjct: 169 GLLVQVNIGREPQKAGIDPESLADFVAECREAHGLPVEGLMCIPPAEADPAPHFAAMQAA 228
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A L LSMGM+ DFE AIA GAT VR+G+ IFGER
Sbjct: 229 AARLGLATLSMGMSGDFEAAIAHGATHVRVGTAIFGER 266
>gi|258543383|ref|YP_003188816.1| hypothetical protein APA01_23230 [Acetobacter pasteurianus IFO
3283-01]
gi|256634461|dbj|BAI00437.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01]
gi|256637519|dbj|BAI03488.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03]
gi|256640571|dbj|BAI06533.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07]
gi|256643628|dbj|BAI09583.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22]
gi|256646683|dbj|BAI12631.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26]
gi|256649736|dbj|BAI15677.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32]
gi|256652724|dbj|BAI18658.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655780|dbj|BAI21707.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12]
Length = 232
Score = 187 bits (475), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 137/218 (62%), Gaps = 1/218 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++L +Q I+ SA A R SV+LVAVSK + ++ AL+ GQ +F EN++QEA
Sbjct: 12 LADRLAAVRQNIDASAHAAGRDPASVTLVAVSKFHPLESVQEALAAGQRVFGENRVQEAA 71
Query: 63 KKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ LR + D++L IG LQ+NK + V + DVIE++ R + A L K+ R
Sbjct: 72 SKFPALRATYPDLRLHLIGGLQTNKARDAVRIADVIESLDRPELAEALLKAADKEGRLPE 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ I+VNTG E QK G+ + F+ CRQ++ ++GLMCIPPAM +P PHF LL +A
Sbjct: 132 LLIEVNTGDEPQKFGVPREKADSFIRTCRQQFGDKLQGLMCIPPAMQDPVPHFRLLRSMA 191
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+E L +SMGM+ D+ AIA GAT VR+G+ IFG RP
Sbjct: 192 QEHGLPVISMGMSADYPQAIAEGATLVRVGTAIFGPRP 229
>gi|209542806|ref|YP_002275035.1| alanine racemase domain-containing protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530483|gb|ACI50420.1| alanine racemase domain protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 248
Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 91/196 (46%), Positives = 123/196 (62%), Gaps = 1/196 (0%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIGSLQS 84
D+V+LVAVSK + AL GQ++F EN++QEA K+ LR +W ++L IG LQ+
Sbjct: 41 DAVTLVAVSKFHPQSSVVAALEAGQMVFGENRVQEAAGKFPSLRADWPALRLHVIGGLQT 100
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK + V + D+IE++ R A L + R + +QVNTG E QKSG+ Q
Sbjct: 101 NKALDAVRIADMIESLDRPALADALVRAADRAGRLPDLLVQVNTGDEAQKSGVPRAQADA 160
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASG 204
F+ CR+++ V GLMCIPPA +P PHF L+E+ R L LSMGM+ DFE AIA+G
Sbjct: 161 FITDCRRRFGDAVRGLMCIPPADRDPAPHFAFLAELGRAHGLEVLSMGMSADFEAAIAAG 220
Query: 205 ATSVRIGSGIFGERPC 220
AT VR+GS IFG+RP
Sbjct: 221 ATHVRVGSAIFGQRPA 236
>gi|299133185|ref|ZP_07026380.1| alanine racemase domain protein [Afipia sp. 1NLS2]
gi|298593322|gb|EFI53522.1| alanine racemase domain protein [Afipia sp. 1NLS2]
Length = 229
Score = 185 bits (469), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 128/213 (60%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +Q+I + A+R + SV L+AVSK D+ I +S GQ +F EN++QEAK KW
Sbjct: 17 LASVEQEILRACADARRDRASVELIAVSKTFDAAAISPVISAGQRVFGENRVQEAKAKWP 76
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L ++L IG LQSNK E V LFD I +V R LS E+ + R ++ Q
Sbjct: 77 ELMAATPGLRLHLIGPLQSNKAREAVMLFDAIHSVDRPSICEALSKEIKSRERNPLLFAQ 136
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
+NTG E QK+G++P + F+ CR +Y L + GLMCIPP P PHF L ++IA+
Sbjct: 137 INTGEESQKAGVIPQEADSFLAACRDRYGLTISGLMCIPPVDEAPAPHFALTAKIAKRNG 196
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DF +AI GAT +R+GS IFG R
Sbjct: 197 LKLLSMGMSADFAVAIQFGATHIRVGSAIFGHR 229
>gi|254421067|ref|ZP_05034791.1| conserved hypothetical protein TIGR00044 [Brevundimonas sp. BAL3]
gi|196187244|gb|EDX82220.1| conserved hypothetical protein TIGR00044 [Brevundimonas sp. BAL3]
Length = 232
Score = 184 bits (467), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 94/217 (43%), Positives = 132/217 (60%), Gaps = 1/217 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ + +I+ + A R +V+L AVSK + I L+ GQ +F EN++QEA+
Sbjct: 13 IAERVAGVRARIDAACHAAGRDPAAVTLTAVSKTQPDEAIDAILATGQRVFGENRVQEAQ 72
Query: 63 KKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+W D ++LR IG LQ+NK + V LFDVIET+ REK A L+ K+ R
Sbjct: 73 ARWTERLSGLDGLELRLIGPLQTNKAEDAVVLFDVIETLDREKLARALAEAAQKRGRSPR 132
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V +QVNTG E QK+G++P + R+ Y L VEGLMCIPPA +PHF LL ++A
Sbjct: 133 VLVQVNTGAEPQKAGVLPEAAAALIDTARRTYGLTVEGLMCIPPADQAAEPHFALLRDMA 192
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ LSMGM+ D+E AI GAT VR+G+ +FGER
Sbjct: 193 ERNGLSVLSMGMSGDYETAIRCGATHVRVGTALFGER 229
>gi|220927870|ref|YP_002504779.1| alanine racemase domain protein [Clostridium cellulolyticum H10]
gi|219998198|gb|ACL74799.1| alanine racemase domain protein [Clostridium cellulolyticum H10]
Length = 225
Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 141/218 (64%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ N+ ++ Q IE SA KR +++L+AVSK + KI L G F E+++QEA
Sbjct: 5 SILNQYKLIVQNIEKSAEKVKRDAKNINLLAVSKFHEVNKIIPLLEIGHCHFGESRVQEA 64
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K KWI L+K + L IG LQ+NKV + + LFD+IET+ REK A ++ E+ K +
Sbjct: 65 KSKWIDLKKLYPQTILHLIGPLQTNKVKDAIQLFDIIETLDREKLAEKIADELRKTGKNP 124
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++IQVN G E+QKSGI P + K F+ CR Y L+++GLMCIPPA + +F L +
Sbjct: 125 KIFIQVNIGMEVQKSGIAPEELKMFLNKCRNDYALDIKGLMCIPPAGEDSVKYFLDLYNL 184
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A++ L ++SMGM+ D++ AI SGAT VRIGS +FG+R
Sbjct: 185 AQKNGLEEISMGMSDDYQEAILSGATQVRIGSSLFGKR 222
>gi|162148167|ref|YP_001602628.1| alanine racemase [Gluconacetobacter diazotrophicus PAl 5]
gi|161786744|emb|CAP56327.1| putative alanine racemase [Gluconacetobacter diazotrophicus PAl 5]
Length = 248
Score = 182 bits (461), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 91/196 (46%), Positives = 124/196 (63%), Gaps = 1/196 (0%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIGSLQS 84
D+V+LVAVSK + AL GQ++F EN++QEA K+ LR +W ++L IG LQ+
Sbjct: 41 DAVTLVAVSKFHPQSSVVAALEAGQMVFGENRVQEAAGKFPSLRADWPALRLHVIGGLQT 100
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK + V + D+IE++ R A L+ + R + +QVNTG E QKSG+ Q
Sbjct: 101 NKALDAVRIADMIESLDRPALADALARAADRAGRLPDLLVQVNTGDEAQKSGVPRAQADA 160
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASG 204
F+ CR+++ V GLMCIPPA +P PHF L+E+ R L LSMGM+ DFE AIA+G
Sbjct: 161 FITDCRRRFGDAVRGLMCIPPADRDPAPHFAFLAELGRAHGLEVLSMGMSADFEAAIAAG 220
Query: 205 ATSVRIGSGIFGERPC 220
AT VR+GS IFG+RP
Sbjct: 221 ATHVRVGSAIFGQRPA 236
>gi|302381495|ref|YP_003817318.1| alanine racemase [Brevundimonas subvibrioides ATCC 15264]
gi|302192123|gb|ADK99694.1| alanine racemase domain protein [Brevundimonas subvibrioides ATCC
15264]
Length = 237
Score = 181 bits (460), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 130/219 (59%), Gaps = 2/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ +L V + +I +A A R SV+L AVSK + I ALS G +F EN++QE
Sbjct: 11 LDFAGRLAVVRSRILGAAKAAGRDPASVTLTAVSKTQPPEAIDAALSAGLRVFGENRVQE 70
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ +W+ R D++LR IG LQSNK + V+LFDVIET+ REK L+ K R
Sbjct: 71 AQGRWLDRRAGLPDLELRLIGPLQSNKAEDAVALFDVIETLDREKLVGALASAAAKVGRS 130
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ +QVNTG E QK+G+ P + L R + L VEGLM IPPA P HF LL+
Sbjct: 131 PRLLVQVNTGEEPQKAGVAPRDADALIALARAQ-GLTVEGLMAIPPADEEPILHFALLAR 189
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IA L LSMGM+ D+E AI G+T VR+GS +FGER
Sbjct: 190 IAERNGLGVLSMGMSGDYEAAIRLGSTHVRVGSALFGER 228
>gi|94496649|ref|ZP_01303225.1| hypothetical protein SKA58_18132 [Sphingomonas sp. SKA58]
gi|94424009|gb|EAT09034.1| hypothetical protein SKA58_18132 [Sphingomonas sp. SKA58]
Length = 246
Score = 181 bits (458), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 132/216 (61%), Gaps = 2/216 (0%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L + + +A L R D + L+AVSK D+ IR ++ GQ +F EN++QE+++KW
Sbjct: 14 RLAAVRDAMRRAARLTDRSADDIRLIAVSKTHDADAIRPLIAAGQRVFGENRVQESQQKW 73
Query: 66 IPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
LR+ + D++L +G LQSNK +E V+LFDVI + R + L+ M R +P +I
Sbjct: 74 PALREAQEDIELHLVGQLQSNKAAEAVALFDVIHGLDRPSLLTALARAMDGAGRRVPCFI 133
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVN G E QK G P +I + + + GLMC+PPA P P F LL+++ARE
Sbjct: 134 QVNIGAEEQKGGC-PIADTPALIAAARDADIPILGLMCVPPADVEPAPFFALLAKMAREE 192
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L +LSMGM+ D+E AI GAT +R+G+ +FGERP
Sbjct: 193 GLERLSMGMSGDYETAIMLGATDIRVGTALFGERPA 228
>gi|170750500|ref|YP_001756760.1| alanine racemase domain-containing protein [Methylobacterium
radiotolerans JCM 2831]
gi|170657022|gb|ACB26077.1| alanine racemase domain protein [Methylobacterium radiotolerans JCM
2831]
Length = 250
Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 129/213 (60%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + I +A ++R + LVAVSK V ++ I AL G +F EN +QE+ KW
Sbjct: 34 LAEVRAAIARAAEDSERDPAEIQLVAVSKTVPAEGILPALKAGHRVFGENYVQESVAKWP 93
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR + DV+L +G LQSNK E V+LFDVI ++ R A+ L+ E+ + R + IQ
Sbjct: 94 GLRARFPDVELHLVGPLQSNKAREAVALFDVIHSLDRLSLAAALAKEIERSGRTPKLLIQ 153
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK G++P+Q + CR+ + L ++GLMCIPPA P HF LL+ +A+
Sbjct: 154 VNTGAEPQKGGVLPDQLATLLSECRETHGLAIQGLMCIPPAEDPPSAHFALLARLAKAHN 213
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DF AI GAT VR+G+ IFG R
Sbjct: 214 LPILSMGMSADFPAAIQLGATHVRVGTAIFGAR 246
>gi|56698252|ref|YP_168625.1| alanine racemase domain-containing protein [Ruegeria pomeroyi
DSS-3]
gi|56679989|gb|AAV96655.1| alanine racemase domain protein [Ruegeria pomeroyi DSS-3]
Length = 232
Score = 179 bits (455), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 129/213 (60%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ K +I + A RP SV L+AVSK+ ++++ L G IF EN++QEA KW
Sbjct: 16 LQEIKNRIARAEQAANRPDGSVKLIAVSKVQPNERVEAVLEQGHRIFGENRVQEAAGKWP 75
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ +D V+L IG LQ+NK + + L I +V R K A+ L+ + R ++IQ
Sbjct: 76 AFMERYDGVELHLIGPLQTNKARQAMELVHAIHSVDRPKLATTLARLAQELGRCPDLFIQ 135
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GIMP + F+ CR L V+GLMCIPP P HF LL++IA
Sbjct: 136 VNTGEEDQKAGIMPAEADGFIAECR-ALDLPVQGLMCIPPVEEEPALHFALLAKIAARNG 194
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ LSMGM+ DFE AIA GAT VR+GS IFG+R
Sbjct: 195 LSGLSMGMSGDFESAIALGATHVRVGSAIFGDR 227
>gi|154251738|ref|YP_001412562.1| alanine racemase domain-containing protein [Parvibaculum
lavamentivorans DS-1]
gi|154155688|gb|ABS62905.1| alanine racemase domain protein [Parvibaculum lavamentivorans DS-1]
Length = 230
Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 90/194 (46%), Positives = 121/194 (62%), Gaps = 1/194 (0%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIGSLQS 84
+ +SL+AVSK ++ I L GQ F EN++QEA KW LR+ + ++L IG LQS
Sbjct: 36 EEISLIAVSKTFEADAIAPLLDAGQRCFGENRVQEAAGKWPHLRERYSGIELHLIGPLQS 95
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK+++ + LFDV+ T+ R K A L R +++QVNTG E QK+G+ P
Sbjct: 96 NKLNDALDLFDVLHTLDRAKLAEALVKARDAGKRLPRLFLQVNTGEEPQKAGVPPGDVDR 155
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASG 204
F+ CR ++L +EGLMCIPP P HF LL +IAR L+KLSMGM+ DFE AI G
Sbjct: 156 FLERCRNDWKLEIEGLMCIPPVTEEPALHFALLEKIARRNGLSKLSMGMSADFETAIRLG 215
Query: 205 ATSVRIGSGIFGER 218
AT VR+GS +FG R
Sbjct: 216 ATHVRVGSALFGTR 229
>gi|329113972|ref|ZP_08242739.1| Hypothetical protein APO_0746 [Acetobacter pomorum DM001]
gi|326696719|gb|EGE48393.1| Hypothetical protein APO_0746 [Acetobacter pomorum DM001]
Length = 232
Score = 179 bits (453), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 136/218 (62%), Gaps = 1/218 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++L +Q I+ +A A R SV+LVAVSK ++ AL+ GQ +F EN++QEA
Sbjct: 12 LADRLTAVRQNIDAAAHTAGRNPASVTLVAVSKFHPLSSVQEALAAGQRVFGENRVQEAA 71
Query: 63 KKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ LR + D++L IG LQ+NK + V + DVIE++ R + A L+ K+
Sbjct: 72 SKFPTLRATYPDLRLHLIGGLQTNKARDAVRIADVIESLDRPELAEALAKAADKEGLLPE 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ I+VNTG E QK G+ + F+ CRQ++ ++GLMCIPPAM +P PHF LL +A
Sbjct: 132 LLIEVNTGDEPQKFGVPREKADSFIRTCRQQFGAKLQGLMCIPPAMQDPVPHFRLLRSMA 191
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+E L +SMGM+ D+ AIA GAT VR+G+ IFG RP
Sbjct: 192 QEHGLPVISMGMSADYPQAIAEGATLVRVGTAIFGPRP 229
>gi|114799476|ref|YP_762223.1| alanine racemase domain-containing protein [Hyphomonas neptunium
ATCC 15444]
gi|114739650|gb|ABI77775.1| alanine racemase, N-terminal domain protein [Hyphomonas neptunium
ATCC 15444]
Length = 222
Score = 179 bits (453), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 89/190 (46%), Positives = 122/190 (64%), Gaps = 1/190 (0%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVS 88
L+AVSK + I AL+ GQ +F EN++QEA++ W R+ + D+ L IG LQ+NK +
Sbjct: 30 LIAVSKFQPDEAIEAALAAGQRVFGENRVQEAQQHWQARRETYADLTLHLIGPLQTNKAA 89
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
+ V LFDVI+T+ REK A L+ M K+ R + IQVNTG E QK+G+ P++ +
Sbjct: 90 DAVRLFDVIQTLDREKLADALAAAMEKEGRRPKMLIQVNTGEEDQKAGVFPSKVGALLRY 149
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSV 208
R+ L V+GLMCIPP PHF LL +IA++ L LSMGM+ D+ELA GAT V
Sbjct: 150 ARESANLEVDGLMCIPPVDEPAGPHFALLKKIAKDYGLPVLSMGMSGDYELAARYGATHV 209
Query: 209 RIGSGIFGER 218
R+G+ FGER
Sbjct: 210 RVGTAFFGER 219
>gi|294009999|ref|YP_003543459.1| hypothetical protein SJA_C1-00130 [Sphingobium japonicum UT26S]
gi|292673329|dbj|BAI94847.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
Length = 248
Score = 178 bits (452), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 130/219 (59%), Gaps = 6/219 (2%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N+L + + +A L R D ++L+AVSK + IR ++ GQ +F EN++QEA+ K
Sbjct: 15 NRLAGIRAAMGRTASLTGRTADDITLIAVSKTQAADAIRPLIAAGQRVFGENRVQEAESK 74
Query: 65 WIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W LR E D +QL +G LQSNK ++ V+LFDVI ++ R + L+ M R +P +
Sbjct: 75 WPALRDEHDGLQLHLVGQLQSNKAADAVALFDVIHSLDRPSLLTALARAMDAADRRVPCF 134
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPHFYLLSEIA 181
+QVN G E QK G D L R + + GLMC+PPA P P F LL+++A
Sbjct: 135 VQVNIGAEPQKGGC---PIADVPALIRSAREAGIPLLGLMCVPPADIEPAPFFALLAKMA 191
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
RE L LSMGM+ D+E AI GAT +R+G+ +FGERP
Sbjct: 192 REEGLEGLSMGMSGDYETAIMLGATHIRVGTALFGERPA 230
>gi|304320521|ref|YP_003854164.1| hypothetical protein PB2503_04737 [Parvularcula bermudensis
HTCC2503]
gi|303299423|gb|ADM09022.1| hypothetical protein PB2503_04737 [Parvularcula bermudensis
HTCC2503]
Length = 226
Score = 177 bits (450), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 128/217 (58%), Gaps = 2/217 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ N QV + +I +A A R D+V L VSK ++KI L+ G F EN++QEA+
Sbjct: 7 IANYEQV-QSRIRRAAQEAARSPDAVELTVVSKTWPTEKISPLLAHGHRRFGENRVQEAQ 65
Query: 63 KKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW L+ + D + IG+LQSNK ++ + LFDV+E++ REK +R
Sbjct: 66 AKWPALKSAYPDCCVHLIGALQSNKAADTIGLFDVVESLDREKLVHAFRRLADDGARLPA 125
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
++QVNTG E QKSG++P FV CR L++ GLM IPP P PHF LL E+A
Sbjct: 126 FFVQVNTGEEAQKSGVLPADAVAFVDWCRNDQHLDILGLMAIPPQDDPPAPHFALLHELA 185
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E ++ LSMGM+ D+E A+ GAT VR+GS IFG R
Sbjct: 186 AEAGVSALSMGMSGDYETAVHLGATMVRVGSAIFGPR 222
>gi|329891188|ref|ZP_08269531.1| hypothetical protein BDIM_28990 [Brevundimonas diminuta ATCC 11568]
gi|328846489|gb|EGF96053.1| hypothetical protein BDIM_28990 [Brevundimonas diminuta ATCC 11568]
Length = 217
Score = 177 bits (450), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 132/210 (62%), Gaps = 1/210 (0%)
Query: 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69
+++I ++A+ A R SV L AVSK + AL+ GQ +F EN++QEAK W R
Sbjct: 1 MRRRIHDAALAAGRDPASVVLTAVSKTQGDAALDAALATGQRVFGENRVQEAKAHWDERR 60
Query: 70 KEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
D++LR IG LQ+NK + V LFDVIET+ RE+ A+ L+ K R V +QVNT
Sbjct: 61 AALPDLELRLIGPLQTNKAQDAVELFDVIETLDRERLAAALAAAARKTGRRPRVLVQVNT 120
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK 188
G E QK+G++P+ + R + L VEGLMCIPPA +P PHF LL+ IA L+
Sbjct: 121 GAEPQKAGVLPDDADALIAAARDVHGLTVEGLMCIPPADEDPAPHFALLAAIAARNGLSV 180
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D+ AI +GAT VR+GS +FGER
Sbjct: 181 LSMGMSGDYLTAIEAGATHVRVGSALFGER 210
>gi|307297025|ref|ZP_07576841.1| alanine racemase domain protein [Sphingobium chlorophenolicum L-1]
gi|306877551|gb|EFN08779.1| alanine racemase domain protein [Sphingobium chlorophenolicum L-1]
Length = 243
Score = 177 bits (449), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 130/217 (59%), Gaps = 2/217 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++L + + +A L+ R D + L+AVSK + IR + GQ +F EN++QEA+ K
Sbjct: 10 DRLAQVRDAMGRAARLSGRTADDIRLIAVSKTQGADAIRPLIEAGQRVFGENRVQEAESK 69
Query: 65 WIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W LR+E+ D+ L +G LQSNK + V+LFDVI ++ R + L+ M + +P Y
Sbjct: 70 WPGLREEFADLALHLVGQLQSNKAGDAVALFDVIHSLDRPSLLTALAKAMDAAGKRVPCY 129
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
IQVN G E QK G T + R + + GLMC+PPA P P F LL+++ARE
Sbjct: 130 IQVNIGAEEQKGGCAIADTPALIRAARDA-DIPLLGLMCVPPADVEPAPFFALLAKMARE 188
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L +LSMGM+ DFE AI GAT +R+G+ +FGERP
Sbjct: 189 EGLERLSMGMSGDFETAIMLGATDIRVGTALFGERPA 225
>gi|254292388|ref|YP_003058411.1| alanine racemase domain protein [Hirschia baltica ATCC 49814]
gi|254040919|gb|ACT57714.1| alanine racemase domain protein [Hirschia baltica ATCC 49814]
Length = 228
Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 132/207 (63%), Gaps = 1/207 (0%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I+ +A+ S++L AVSK+ +I L+ GQ ++ EN++QEA ++W +++
Sbjct: 18 RIKKTALSKGVDPQSITLTAVSKVQPENRIEDMLAIGQRVYGENRVQEAFERWGERKQQI 77
Query: 73 -DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
D++LR IG LQ+NK E V LFDVIET+ R K A ++ + K + +++QVNTG E
Sbjct: 78 PDLKLRLIGPLQTNKAEEAVRLFDVIETIDRLKLAQSIAKAVQKTGKNPELFVQVNTGEE 137
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSM 191
QK+GI+P + DF+ ++ L + GLMCIPP PHF LL +IA ++KLSM
Sbjct: 138 DQKAGILPGEVDDFLKQIVSEFSLKISGLMCIPPVDEPAGPHFALLRKIANRNGISKLSM 197
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DFE AI GAT VR+GS +FGER
Sbjct: 198 GMSSDFETAIGFGATHVRVGSALFGER 224
>gi|288959470|ref|YP_003449811.1| hypothetical protein AZL_026290 [Azospirillum sp. B510]
gi|288911778|dbj|BAI73267.1| hypothetical protein AZL_026290 [Azospirillum sp. B510]
Length = 226
Score = 174 bits (441), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 138/219 (63%), Gaps = 5/219 (2%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L ++ I +A R +V+LVAVSK ++ + AL+ GQ +F EN++QEAK K+
Sbjct: 4 RLDGVRRAIVETATACGRGDGAVTLVAVSKTHPAEAVEEALAAGQRVFGENRVQEAKAKF 63
Query: 66 IPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL----EMIKQSRFL 120
L++ + D++L IG LQ+NKV + V+LFDVI+T+ R K A L+ EM K R
Sbjct: 64 PALKERFADLELHLIGPLQTNKVKDAVALFDVIQTLDRPKLAEALAAEMAKEMAKTGRRP 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
I+VNTG E QK+GI P + + F+ CR + L V GLMCIPP P HF LL+E+
Sbjct: 124 RCLIEVNTGEEPQKAGIAPAEVEAFLADCRDRLGLPVTGLMCIPPVDEEPAMHFALLAEM 183
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
AR L ++SMGM+ D+E A+ GAT VR+G+ IFG RP
Sbjct: 184 ARRLDLPEISMGMSGDYETAVRFGATHVRVGTAIFGSRP 222
>gi|310817227|ref|YP_003965191.1| alanine racemase domain protein [Ketogulonicigenium vulgare Y25]
gi|308755962|gb|ADO43891.1| alanine racemase domain protein [Ketogulonicigenium vulgare Y25]
Length = 218
Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/207 (42%), Positives = 125/207 (60%), Gaps = 2/207 (0%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I ++A+ R V+L+AVSK+ + ++ L GQ +F EN++QEA KW R +
Sbjct: 9 RIRDTALDCDRSAADVTLIAVSKVQPNDRVAAVLDAGQRVFGENRVQEAMGKWPDFRATY 68
Query: 73 -DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
DV L IG LQSNK + + LF+ I T+ R + A + + + +++QVNTG E
Sbjct: 69 GDVDLHLIGPLQSNKARQAMELFNAIHTLDRLRLAETFARLAQELGKCPDLFVQVNTGAE 128
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSM 191
QK+G +P + V R L V+GLMCIPPA P PHF +L+E+A LT LSM
Sbjct: 129 PQKAGCLPEEVDSLVAAAR-AMDLPVKGLMCIPPADQGPAPHFAMLAEMAARNGLTGLSM 187
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DF++AI GAT VR+GS IFG+R
Sbjct: 188 GMSGDFDVAIRHGATHVRVGSAIFGDR 214
>gi|254460609|ref|ZP_05074025.1| conserved hypothetical protein TIGR00044 [Rhodobacterales bacterium
HTCC2083]
gi|206677198|gb|EDZ41685.1| conserved hypothetical protein TIGR00044 [Rhodobacteraceae
bacterium HTCC2083]
Length = 218
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 126/207 (60%), Gaps = 5/207 (2%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
K EN A R S L+AVSK+ ++++ L G +F EN++QEA KW ++E+
Sbjct: 12 KAENDA---GRSAGSAQLIAVSKVQPNERVHAVLKQGHRVFGENRVQEAAGKWPAFKEEF 68
Query: 73 -DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
D+ + IG LQ+NK + + LFD I TV R K A ++ + R +++QVNTG E
Sbjct: 69 SDISVHLIGPLQTNKARQAMELFDAIHTVDRAKLAKTIARLAQELGRCPELFVQVNTGEE 128
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSM 191
QK+G+ P + F+ CR L V+GLMCIPPA P HF LL++IA L+ LSM
Sbjct: 129 EQKAGVSPQEADGFIEECR-SLDLPVQGLMCIPPADEEPSLHFALLAKIAARNGLSALSM 187
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DFE AIA GAT VR+GS IFG+R
Sbjct: 188 GMSGDFERAIALGATHVRVGSAIFGDR 214
>gi|83941784|ref|ZP_00954246.1| alanine racemase domain protein [Sulfitobacter sp. EE-36]
gi|83847604|gb|EAP85479.1| alanine racemase domain protein [Sulfitobacter sp. EE-36]
Length = 217
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/213 (45%), Positives = 122/213 (57%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ +I + A R SV L+AVSK+ ++ LS G F EN++QEA+ KW
Sbjct: 3 LQDITSRIAKAETDAGRTPGSVELIAVSKVQPDARVAAVLSEGHRCFGENRVQEAEGKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+E+D V+L IG LQSNK LFDVI T+ R K A + + R +++Q
Sbjct: 63 AFRQEFDGVKLHLIGPLQSNKARSAFELFDVIHTLDRPKLAQTFARLAQEMGRCPDMFVQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G+ P DF+ C L V GLMCIPP HF LL++IA
Sbjct: 123 VNTGEEDQKAGVHPADADDFIKEC-LSLDLPVRGLMCIPPVDEEAALHFALLAKIAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 182 LRDLSMGMSSDFEKAIALGATHVRVGSAIFGER 214
>gi|114769843|ref|ZP_01447453.1| alanine racemase domain protein [alpha proteobacterium HTCC2255]
gi|114549548|gb|EAU52430.1| alanine racemase domain protein [alpha proteobacterium HTCC2255]
Length = 217
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/213 (46%), Positives = 128/213 (60%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K +IEN+ A K S L+AVSK+ + K+ L+ G +F ENK+QE+ KW
Sbjct: 3 LHSIKFRIENAEKSAGVIKGSTQLLAVSKVQPNSKVLNVLNQGHNLFGENKVQESFGKWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+ + D ++ IG LQSNKV + V LF+ I T+ R K A LS E+ Q + ++IQ
Sbjct: 63 MFRESFPDAEVHLIGPLQSNKVKQAVELFNAIHTLDRLKLAQKLSNEIQSQGKAPDMFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
+N+G E QKSGI+P+ F+ CR L ++GLM IPP P HF LL IA
Sbjct: 123 INSGEEDQKSGIIPSDADKFIADCR-SLDLPIKGLMVIPPVNDEPSLHFGLLRAIAHRNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 182 LAGLSMGMSNDFESAIAMGATHVRVGSAIFGER 214
>gi|296114825|ref|ZP_06833474.1| hypothetical protein GXY_03573 [Gluconacetobacter hansenii ATCC
23769]
gi|295978639|gb|EFG85368.1| hypothetical protein GXY_03573 [Gluconacetobacter hansenii ATCC
23769]
Length = 295
Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 87/221 (39%), Positives = 126/221 (57%), Gaps = 1/221 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + +I N+A A R ++LVAVSK ++ AL GQ+ F EN++QEA
Sbjct: 73 DIATALATVRARIANAARSAGRDPSDITLVAVSKFHPRARVVAALRAGQMTFGENRVQEA 132
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ LR +W D++L IG LQ+NK + V + D+IE++ R ++ + R
Sbjct: 133 ADKFPSLRAQWPDLRLNIIGGLQTNKAYDAVRIADMIESLDRATLCDAIARAADRVGRLP 192
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ +QVNTG E QKSG+ + F+ ++ V GLMCIPP +P PHF L+ +
Sbjct: 193 RLLVQVNTGDETQKSGVAVEEADAFITAAIARFGDAVAGLMCIPPVDQDPTPHFRTLATM 252
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
A L +SMGM+ DFE AI +GAT VR+GS IFG RP +
Sbjct: 253 AGRHGLGVISMGMSADFEQAIVAGATHVRVGSAIFGPRPTR 293
>gi|86136920|ref|ZP_01055498.1| alanine racemase domain protein [Roseobacter sp. MED193]
gi|85826244|gb|EAQ46441.1| alanine racemase domain protein [Roseobacter sp. MED193]
Length = 219
Score = 172 bits (437), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 127/213 (59%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ K +I + A RP SV+L+AVSK+ + ++ L GQ F EN++QEA KW
Sbjct: 3 LQEIKTRITAAEAAADRPAGSVTLIAVSKVQPNDRVAAVLDEGQRCFGENRVQEALGKWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ + D+ L IG LQ+NK + + LF+ I TV R K A L+ + + ++IQ
Sbjct: 63 DFAETYTDLDLHLIGPLQTNKARQAMELFNAIHTVDRPKLAKTLARLAQELGKCPDLFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
+NTG E QK+GI+P + DF+ CR L V+GLMCIPP HF +L+E+A
Sbjct: 123 INTGAEPQKAGILPAEADDFIAECR-TLDLPVKGLMCIPPVDEVAAKHFTMLAEMATRNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 182 LDGLSMGMSSDFEQAIAHGATHVRVGSAIFGAR 214
>gi|218680714|ref|ZP_03528611.1| hypothetical protein RetlC8_18359 [Rhizobium etli CIAT 894]
Length = 173
Score = 172 bits (436), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/171 (50%), Positives = 113/171 (66%), Gaps = 1/171 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I A RP SV LVAVSK +++ IR A+ GQ +F EN++QE
Sbjct: 2 MELQERLDDVRSRIAAGERQAGRPAGSVRLVAVSKTFEAEAIRPAIDAGQRVFGENRVQE 61
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E D++L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q R
Sbjct: 62 SQGKWPGLKAEQPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQGRT 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
+YIQVNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP
Sbjct: 122 TRLYIQVNTGLEPQKAGIAPDDTPAFVALCRDELGLSIEGLMCIPPAEENP 172
>gi|126731006|ref|ZP_01746814.1| alanine racemase domain protein [Sagittula stellata E-37]
gi|126708308|gb|EBA07366.1| alanine racemase domain protein [Sagittula stellata E-37]
Length = 217
Score = 172 bits (435), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 127/213 (59%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + ++E + A R V L+AVSK+ +++ L G +F EN++QEA KW
Sbjct: 3 LNDIRTRVETACKAANRDPAEVKLIAVSKVQPLERVEAVLEEGHRLFGENRVQEAAGKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+ ++ V + IG LQSNK + + LFD I +V R K A+ ++ + + ++IQ
Sbjct: 63 DFRERFEGVDVHLIGPLQSNKARQAMDLFDAIHSVDRPKLANAIARLAQEMGQCPDLFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P + F+ CR L V GLMCIPP P HF LL++IA
Sbjct: 123 VNTGEEDQKAGVLPKEADAFIAECR-GLDLPVAGLMCIPPVEETPSLHFALLAKIAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LT LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 182 LTGLSMGMSADFEEAIALGATHVRVGSAIFGER 214
>gi|254510435|ref|ZP_05122502.1| pyridoxal phosphate enzyme, YggS family [Rhodobacteraceae bacterium
KLH11]
gi|221534146|gb|EEE37134.1| pyridoxal phosphate enzyme, YggS family [Rhodobacteraceae bacterium
KLH11]
Length = 219
Score = 171 bits (434), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 126/213 (59%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ +I + A R K +V L+AVSK+ +++++ L G F EN++QEA KW
Sbjct: 3 LQEITDRIATAETAAGRSKGAVKLIAVSKVQPNERVKAVLEQGHRCFGENRVQEAAGKWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+++ DV L IG LQ+NK + + L D I +V R K A L+ + ++IQ
Sbjct: 63 TFREDFPDVDLHLIGPLQTNKARQAMELCDAIHSVDRPKLAKTLARLAQEIGGCPDLFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI+P+ F+ CR L V GLMC+PP P HF LL++IA
Sbjct: 123 VNTGEEQQKAGILPSDADAFIKECR-GLDLPVRGLMCLPPVEEEPALHFALLAKIAERNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 182 LDGLSMGMSGDFETAIALGATHVRVGSAIFGER 214
>gi|259417396|ref|ZP_05741315.1| pyridoxal phosphate enzyme, YggS family [Silicibacter sp.
TrichCH4B]
gi|259346302|gb|EEW58116.1| pyridoxal phosphate enzyme, YggS family [Silicibacter sp.
TrichCH4B]
Length = 218
Score = 171 bits (434), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 128/213 (60%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K +I + A R SV L+AVSK+ ++++ L G +F EN++QEA KW
Sbjct: 3 LSEIKSRIAAAETTAGRAPGSVELIAVSKVQPNERVEAVLEEGHRVFGENRVQEAAGKWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+++ DV L IG LQ+NK + + L + I +V R K A+ L+ + ++IQ
Sbjct: 63 EFREKFSDVDLHLIGPLQTNKARQAMELVNAIHSVDRPKLATTLARLAQELGHCPELFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI+P + F+ CR L ++GLMCIPP P HF LL++IA
Sbjct: 123 VNTGEEEQKAGILPKDSDGFIQECR-ALDLPIKGLMCIPPVDEEPSLHFALLAKIAERNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 182 LSGLSMGMSGDFESAIALGATHVRVGSAIFGER 214
>gi|84687982|ref|ZP_01015846.1| alanine racemase domain protein [Maritimibacter alkaliphilus
HTCC2654]
gi|84664014|gb|EAQ10514.1| alanine racemase domain protein [Rhodobacterales bacterium
HTCC2654]
Length = 217
Score = 171 bits (434), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 122/208 (58%), Gaps = 2/208 (0%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
QKI + R S L+AVSK+ +I L G +F ENK+QEA KW LR
Sbjct: 8 QKIRDEEARVGREAGSTRLIAVSKVQPLDRIVSVLDEGHRLFGENKVQEAAGKWPDLRAR 67
Query: 72 WD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
++ ++L IG LQ+NK + + LFD IETV R K A ++ + +++QVNTG
Sbjct: 68 YESIELHLIGPLQTNKARQAMELFDAIETVDRPKLAKTIARLAEELGHCPKLFVQVNTGE 127
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLS 190
E QK+G+MP F+ CR L + GLMCIPP P HF LL++IA L +LS
Sbjct: 128 EEQKAGVMPGDADAFIADCRD-LGLTIAGLMCIPPVDEEPSLHFALLAKIAARNGLDELS 186
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGM+ DFE A+A GAT VR+GS IFGER
Sbjct: 187 MGMSGDFEKAVAQGATYVRVGSAIFGER 214
>gi|119385486|ref|YP_916542.1| alanine racemase domain-containing protein [Paracoccus
denitrificans PD1222]
gi|119375253|gb|ABL70846.1| alanine racemase domain protein [Paracoccus denitrificans PD1222]
Length = 217
Score = 171 bits (433), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 126/213 (59%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +++I + + R V+L+AVSK+ ++ L GQ +F EN +QEA KW
Sbjct: 3 LDEIRRRISAAETASGRAAGEVTLIAVSKVQPPDRVEAVLDAGQRVFGENYVQEAAGKWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+ + ++L IG LQ+NK+ + LFD I T+ R A+ L+ ++ + +++Q
Sbjct: 63 GWRERFAGIELHMIGPLQTNKLKPALELFDAIHTLDRPSLATKLARQVQVRGACPQLFVQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI+P++ F+ CR L + GLMCIPP +P PHF L +IA
Sbjct: 123 VNTGAEPQKAGILPDEADAFIAQCR-ALDLAISGLMCIPPEDRDPVPHFRDLRDIAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA GAT VRIGS IFG R
Sbjct: 182 LAGLSMGMSADFETAIAEGATHVRIGSAIFGAR 214
>gi|89070621|ref|ZP_01157901.1| alanine racemase domain protein [Oceanicola granulosus HTCC2516]
gi|89043768|gb|EAR49970.1| alanine racemase domain protein [Oceanicola granulosus HTCC2516]
Length = 216
Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/198 (43%), Positives = 119/198 (60%), Gaps = 2/198 (1%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIGS 81
RP +V L+AVSK+ ++ L G +F EN++QEA KW R +++ V + +G
Sbjct: 19 RPAGAVELIAVSKLQPESRVADVLEAGHRLFGENRVQEAAGKWPDFRAQFEGVAVHLLGP 78
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQ+NK + + LF+ I ++ R K A L+ + R +++QVNTG E QK+GI+P +
Sbjct: 79 LQTNKARQALELFEAIHSLDRPKLAGTLARLAQETGRCPDLFVQVNTGEEPQKAGILPGE 138
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI 201
F+ CR L V GLMCIPP P HF LL++IA L LSMGM+ DFE AI
Sbjct: 139 ADGFIAECR-GMDLPVRGLMCIPPVDEEPALHFALLAKIAARNGLEGLSMGMSGDFERAI 197
Query: 202 ASGATSVRIGSGIFGERP 219
A GAT VR+GS IFG RP
Sbjct: 198 AQGATHVRVGSAIFGARP 215
>gi|254465811|ref|ZP_05079222.1| conserved hypothetical protein TIGR00044 [Rhodobacterales bacterium
Y4I]
gi|206686719|gb|EDZ47201.1| conserved hypothetical protein TIGR00044 [Rhodobacterales bacterium
Y4I]
Length = 216
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/213 (44%), Positives = 124/213 (58%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K +I + A R SV L+AVSK+ ++++ L G F ENK+QEA KW
Sbjct: 3 LDEIKSRIAKAEADAGRAPGSVKLIAVSKVQPNERVEAVLEEGHRCFGENKVQEAAGKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ +D + L IG LQ+NK + + LFD I +V R K A+ L+ + ++IQ
Sbjct: 63 AFAERFDGIDLHLIGPLQTNKARQAMELFDSIHSVDRPKLANTLARLAQELGTCPDLFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G+MP F+ CR L V+GLMCIPP P HF LL++IA+
Sbjct: 123 VNTGEEEQKAGVMPADADAFIAECR-ALDLPVKGLMCIPPVDEEPSLHFALLAKIAKRNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 182 LQGLSMGMSGDFETAIALGATHVRVGSAIFGAR 214
>gi|255264498|ref|ZP_05343840.1| pyridoxal phosphate enzyme, YggS family [Thalassiobium sp. R2A62]
gi|255106833|gb|EET49507.1| pyridoxal phosphate enzyme, YggS family [Thalassiobium sp. R2A62]
Length = 225
Score = 168 bits (426), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 125/218 (57%), Gaps = 3/218 (1%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +IE A R V L+AVSK+ + ++ L G +F EN++QEA KW
Sbjct: 9 LAEIEARIEAEAERVGRDPVGVRLIAVSKVQPNDRVAAVLEQGHRLFGENRVQEAAGKWP 68
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R + D+++ IG LQ+NK + + LFD I T+ R K A ++ + +YIQ
Sbjct: 69 EFRSRFEDIEVDLIGPLQTNKARQAMELFDAIHTIDRSKLAKTIARLAQEIGACPDLYIQ 128
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI P FV C L V GLMCIPPA P HF LL+++A +
Sbjct: 129 VNTGREDQKAGIAPEDVDGFVAEC-VAMDLPVRGLMCIPPAEEEPSLHFALLAKMAGRNE 187
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER-PCQT 222
LT LSMGM+ DFE AIA GAT VR+GS IFG+R P T
Sbjct: 188 LTGLSMGMSGDFECAIAQGATHVRVGSAIFGDRVPAAT 225
>gi|294675817|ref|YP_003576432.1| alanine racemase domain-containing protein [Rhodobacter capsulatus
SB 1003]
gi|294474637|gb|ADE84025.1| alanine racemase domain protein [Rhodobacter capsulatus SB 1003]
Length = 220
Score = 168 bits (425), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 93/215 (43%), Positives = 128/215 (59%), Gaps = 6/215 (2%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ + +I + A R + +V L+AVSK+ +++ L GQ +F EN +QEA KW
Sbjct: 3 LQEIQTRIAKATRAAGRAEGAVRLIAVSKVQPPERVLAVLDQGQRLFGENYVQEAAGKWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP--VY 123
R E+ V + IG LQ+NK + V LF+ I T+ R A + L + Q+R ++
Sbjct: 63 DWRAEFPGVAVHMIGPLQTNKAKQAVELFEAIHTLDRPSLA--VKLASLAQARGASPDLF 120
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVNTG E QK+G++P FV R + L V GLMCIPP +P PHF +L+ +A
Sbjct: 121 VQVNTGSEPQKAGVLPEALDAFVAEAR-RLDLPVVGLMCIPPEAEDPAPHFAMLAGMAAR 179
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LT LSMGM+ DFE AIA+GAT VR+GS IFG R
Sbjct: 180 NGLTGLSMGMSSDFEAAIAAGATHVRVGSAIFGAR 214
>gi|149201521|ref|ZP_01878495.1| hypothetical protein RTM1035_03255 [Roseovarius sp. TM1035]
gi|149144569|gb|EDM32598.1| hypothetical protein RTM1035_03255 [Roseovarius sp. TM1035]
Length = 217
Score = 168 bits (425), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 126/213 (59%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +++ + A R V L+AVSK+ ++++ L G +F EN++QEA +W
Sbjct: 3 LSEIRARMDKACTAAGRAPQDVELIAVSKVQPAERVAAVLDQGHRVFGENRVQEAAGRWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ + D+ L IG LQSNK + + +F I +V R K A ++ + R +++Q
Sbjct: 63 AFQDRYTDIVLHLIGPLQSNKARQAMEMFQAIHSVDRPKIAQGIARLAQEMGRCPDLFLQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P + FV CR L V+GLMCIPP P HF LL+++A
Sbjct: 123 VNTGEEPQKAGVLPQEIDGFVAECR-ALDLPVKGLMCIPPVEEEPSLHFALLAKMAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 182 LSGLSMGMSGDFESAIAQGATHVRVGSAIFGER 214
>gi|126738690|ref|ZP_01754395.1| alanine racemase domain protein [Roseobacter sp. SK209-2-6]
gi|126720489|gb|EBA17195.1| alanine racemase domain protein [Roseobacter sp. SK209-2-6]
Length = 219
Score = 167 bits (424), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 95/213 (44%), Positives = 125/213 (58%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ K +IE + A R SV L+AVSK+ ++++ L G F EN++QEA KW
Sbjct: 3 LEDIKARIEAAEGKAGRALGSVQLIAVSKVQPNERVEAVLQEGHRCFGENRVQEAAGKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
K++ + L IG LQ+NK + + LFDVI +V R K A L+ + ++IQ
Sbjct: 63 DFAKQFSGLDLHLIGPLQTNKARQAMELFDVIHSVDRPKLAKTLARLAQEIGNCPDLFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI+P T F+ CR L V+GLMCIPP HF LL+E+A
Sbjct: 123 VNTGAEEQKAGILPQDTDAFIAECR-ALDLPVQGLMCIPPVEEPAVEHFALLAEMADRNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 182 LDGLSMGMSSDFEEAIAMGATHVRVGSAIFGAR 214
>gi|58040029|ref|YP_191993.1| hypothetical protein GOX1596 [Gluconobacter oxydans 621H]
gi|58002443|gb|AAW61337.1| Hypothetical protein GOX1596 [Gluconobacter oxydans 621H]
Length = 231
Score = 167 bits (424), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 126/218 (57%), Gaps = 2/218 (0%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
GN L + +I + A R + VSLVAVSK + + AL+ GQ +F EN++QEA
Sbjct: 12 GN-LAAIRHRIAQACEKAGRAEADVSLVAVSKFHPIESVEAALNAGQHLFGENRVQEAAS 70
Query: 64 KWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ LR+ W D++L IG LQ+NK +E + D+IE++ R + + K R +
Sbjct: 71 KFPELRQRWPDLRLHIIGGLQTNKAAEACQIADMIESLDRPSLSDSIEKGAQKAGRLPEL 130
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+QVNTG E QKSG+ + F+ +++ + GLMCIPP +P PHF LL ++
Sbjct: 131 LVQVNTGDEPQKSGVPREEADAFIEASLERFGPKIRGLMCIPPEGEDPTPHFRLLRQMGH 190
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L LSMGM+ DFE AIA AT VR+G+ IFG RP
Sbjct: 191 RHGLPVLSMGMSADFEKAIAENATLVRVGTAIFGSRPA 228
>gi|332559311|ref|ZP_08413633.1| Alanine racemase domain protein [Rhodobacter sphaeroides WS8N]
gi|332277023|gb|EGJ22338.1| Alanine racemase domain protein [Rhodobacter sphaeroides WS8N]
Length = 221
Score = 167 bits (424), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 127/213 (59%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +I + A R SV L+AVSK+ +++ L G IF EN +QEA+ KW
Sbjct: 2 LETIQTRIAAAEAAAGRAPGSVELIAVSKVQPLERVVAVLEAGHRIFGENYVQEAQGKWP 61
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ + + + IG LQ+NK V LF+ I T+ R A L+ ++ +++Q
Sbjct: 62 DLRERFGPLSVHMIGPLQTNKAKVAVGLFEAIHTLDRPSLAEKLARLAQERGACPRLFVQ 121
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P++ FV CR L VEGLMCIPP G+ PHF LL+ IA
Sbjct: 122 VNTGEEPQKAGVLPSEADGFVAACR-GMDLPVEGLMCIPPEGGDSAPHFALLAAIAARNG 180
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DF+ AIA+GAT VR+GS IFG R
Sbjct: 181 LRGLSMGMSGDFDAAIAAGATHVRVGSAIFGAR 213
>gi|84515047|ref|ZP_01002410.1| alanine racemase domain protein [Loktanella vestfoldensis SKA53]
gi|84511206|gb|EAQ07660.1| alanine racemase domain protein [Loktanella vestfoldensis SKA53]
Length = 217
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 126/214 (58%), Gaps = 4/214 (1%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +I + A RP V+L+AVSK+ + ++ L G +F ENK+QEA KW
Sbjct: 3 LADIQDRIAAACAKAGRPLQDVTLIAVSKVQPNARVAAVLDQGHRVFGENKVQEAAGKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP-VYI 124
R+ +D + L IG LQ+NK V L I T+ R K A +L+ + ++S P +++
Sbjct: 63 MFRESYDGIALHLIGPLQTNKAKAAVELAQAIHTLDRPKLAQVLA-RLAQESGACPDLFV 121
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVNTG E QK+G++P FV R L + GLMCIPP P HF LL+++A
Sbjct: 122 QVNTGEEPQKAGVLPADVDAFVAEAR-ALDLPIAGLMCIPPVDEEPSLHFALLAKMAARN 180
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LT LSMGM+ DFE AIA GAT VRIG+ IFGER
Sbjct: 181 GLTGLSMGMSGDFESAIALGATHVRIGAAIFGER 214
>gi|315497178|ref|YP_004085982.1| alanine racemase domain protein [Asticcacaulis excentricus CB 48]
gi|315415190|gb|ADU11831.1| alanine racemase domain protein [Asticcacaulis excentricus CB 48]
Length = 221
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/200 (44%), Positives = 121/200 (60%), Gaps = 2/200 (1%)
Query: 20 LAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRF 78
L R S L AVSK + IR L G F EN++QEA ++W P++ ++ D+ L
Sbjct: 23 LTGRADGSACLTAVSKNQPWEVIRPVLEAGHRRFGENRVQEAMERWGPVKDQYPDLTLCL 82
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQSNK ++ V+ FDV+E+V REK A ++ E KQ R VY+QVN G E QK+GI+
Sbjct: 83 IGPLQSNKAADAVAFFDVVESVDREKIARAIADEAQKQGRAPRVYVQVNIGEEPQKAGIL 142
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFE 198
P +T F+ R Y L GLMCIPP G P+F LL ++A + LSMGM+ DFE
Sbjct: 143 PAETDRFIATVR-GYGLEPCGLMCIPPVEGPRGPYFALLRKMAERNGIGHLSMGMSDDFE 201
Query: 199 LAIASGATSVRIGSGIFGER 218
A+ G+ +R+G+ IFG R
Sbjct: 202 TALRFGSNEIRVGTAIFGSR 221
>gi|85704099|ref|ZP_01035202.1| alanine racemase domain protein [Roseovarius sp. 217]
gi|85671419|gb|EAQ26277.1| alanine racemase domain protein [Roseovarius sp. 217]
Length = 217
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 126/213 (59%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K +++ + + A R + V L+AVSK+ +++ L G +F EN++QEA +W
Sbjct: 3 LSEIKARMDKACVAAGRAPEDVDLIAVSKVQPEERVAAVLDQGHRVFGENRVQEAAGRWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++ + + L IG LQSNK + + +F I +V R K A ++ + R +++Q
Sbjct: 63 AFQERYAGIVLHLIGPLQSNKARQAMEMFQAIHSVDRPKIAQAIARLAQEMGRCPDLFLQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P FV CR L V+GLMCIPP P HF LL+++A
Sbjct: 123 VNTGAEPQKAGVLPEAVDGFVAECR-ALDLPVKGLMCIPPVEEEPSLHFALLAKMAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ LSMGM+ DFE AIA GAT +R+GS IFG+R
Sbjct: 182 LSGLSMGMSSDFESAIAQGATHIRVGSAIFGDR 214
>gi|126736208|ref|ZP_01751951.1| hypothetical protein RCCS2_10735 [Roseobacter sp. CCS2]
gi|126714374|gb|EBA11242.1| hypothetical protein RCCS2_10735 [Roseobacter sp. CCS2]
Length = 228
Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 123/207 (59%), Gaps = 2/207 (0%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
++ +A A R +SL+AVSK+ +++ L G IF ENK+QEA KW R+ +
Sbjct: 20 RMSKAAEKAGRSMHELSLIAVSKVQPDARVKAVLDEGHRIFGENKVQEAAGKWPEFREHY 79
Query: 73 -DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
++L IG LQ+NK + + L D I TV R K A+ ++ ++IQVNTG E
Sbjct: 80 TGIKLHLIGPLQTNKTKQAMQLADAIHTVDRPKLANTIARHAQDLGSCPDLFIQVNTGEE 139
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSM 191
QK+G++P + F+ R L ++GLMCIPP P HF LL++IA LT LSM
Sbjct: 140 QQKAGVLPAEADAFIAEVR-ALDLPLKGLMCIPPVDEEPSLHFALLAKIAARNDLTDLSM 198
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DFE AIA GAT +R+GS IFGER
Sbjct: 199 GMSSDFESAIALGATHIRVGSAIFGER 225
>gi|83855262|ref|ZP_00948792.1| alanine racemase domain protein [Sulfitobacter sp. NAS-14.1]
gi|83843105|gb|EAP82272.1| alanine racemase domain protein [Sulfitobacter sp. NAS-14.1]
Length = 217
Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 121/213 (56%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +I + A R SV L+AVSK+ ++ L G F EN++QEA+ KW
Sbjct: 3 LHDITSRIAKAEADAGRTPGSVQLIAVSKVQPDTRVAAVLDEGHRYFGENRVQEAEGKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++++D V L IG LQSNK + LFDVI T+ R K A + + R +++Q
Sbjct: 63 AFQQQYDGVGLHLIGPLQSNKARSAMELFDVIHTLDRPKLAQTFARLAQELGRCPDMFVQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P F+ C Q L V GLMCIPP HF LL++IA
Sbjct: 123 VNTGEEAQKAGVLPADADAFIKEC-QSLDLPVRGLMCIPPVDEEAALHFALLAKIAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 182 VGDLSMGMSSDFEKAIALGATHVRVGSAIFGER 214
>gi|260432321|ref|ZP_05786292.1| pyridoxal phosphate enzyme, YggS family [Silicibacter
lacuscaerulensis ITI-1157]
gi|260416149|gb|EEX09408.1| pyridoxal phosphate enzyme, YggS family [Silicibacter
lacuscaerulensis ITI-1157]
Length = 219
Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 122/213 (57%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ K +I + A R SV+L+AVSK+ + ++ L G F EN++QEA KW
Sbjct: 3 LQDIKDRIAKAEAAAGRSPGSVTLIAVSKVQPNDRVEAVLEQGHRCFGENRVQEAAAKWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+ + + L IG LQ+NK + + L + I +V R K A L+ + ++IQ
Sbjct: 63 AFRERFPGIDLHLIGPLQTNKARQAMELCNAIHSVDRPKLAKTLARLAQEIGTCPDLFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P F+ CR L V GLMCIPP P HF LL++IA
Sbjct: 123 VNTGEEPQKAGVLPADADVFIAECRD-LDLPVRGLMCIPPVHEEPALHFALLAKIAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 182 LQGLSMGMSGDFETAIALGATHVRVGSAIFGER 214
>gi|146279161|ref|YP_001169320.1| alanine racemase domain-containing protein [Rhodobacter sphaeroides
ATCC 17025]
gi|145557402|gb|ABP72015.1| alanine racemase domain protein [Rhodobacter sphaeroides ATCC
17025]
Length = 220
Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/213 (42%), Positives = 119/213 (55%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ +I + A R SV L+AVSK+ ++ L G IF EN +QEA+ KW
Sbjct: 2 LETILNRIAEAEKAAGRAPGSVELIAVSKVQPLDRVVAVLEAGHRIFGENYVQEAQGKWP 61
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR + + + IG LQ+NK V LFD I T+ R A L+ ++ +++Q
Sbjct: 62 ELRARFGRLSIHMIGPLQTNKAKAAVGLFDAIHTLDRPSLADKLARLAQERGASPELFVQ 121
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P F+ CR L V GLMCIPP + PHF L+ IA
Sbjct: 122 VNTGEEPQKAGVLPADADGFIATCR-SMDLPVRGLMCIPPEGEDSAPHFAQLAAIADRNG 180
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA+GAT VR+GS IFG R
Sbjct: 181 LGGLSMGMSGDFEAAIAAGATHVRVGSAIFGAR 213
>gi|99079889|ref|YP_612043.1| hypothetical protein TM1040_0048 [Ruegeria sp. TM1040]
gi|99036169|gb|ABF62781.1| Protein of unknown function UPF0001 [Ruegeria sp. TM1040]
Length = 218
Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 125/213 (58%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K +I + A R SV L+AVSK+ ++++ L G F EN++QEA KW
Sbjct: 3 LSEIKSRIAAAESAAGRVPGSVELIAVSKVQPNERVEAVLEEGHRCFGENRVQEAAGKWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+++ V L IG LQ+NK + + L +VI +V R K A+ L+ + ++IQ
Sbjct: 63 QFREKFTGVDLHLIGPLQTNKARQAMELVNVIHSVDRPKLANALARLAQELGHCPDLFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI+P FV CR K L ++GLMCIPP P HF LL+++A
Sbjct: 123 VNTGEEEQKAGILPQDADGFVAECR-KLDLPIKGLMCIPPVDEEPSLHFALLAKMAERNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 182 LNGLSMGMSGDFESAIALGATHVRVGSAIFGAR 214
>gi|254452266|ref|ZP_05065703.1| conserved hypothetical protein TIGR00044 [Octadecabacter
antarcticus 238]
gi|198266672|gb|EDY90942.1| conserved hypothetical protein TIGR00044 [Octadecabacter
antarcticus 238]
Length = 217
Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/210 (41%), Positives = 123/210 (58%), Gaps = 2/210 (0%)
Query: 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69
K++I + A R S L+AVSK+ +++++ L G I+ EN++QEA KW R
Sbjct: 6 IKKRISAAEAKAGRSDGSTKLIAVSKVQPNERVQAILEQGHRIYGENRVQEAADKWPAFR 65
Query: 70 KEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
+++D ++L IG LQ+NK + L I T+ R K A + + + +YIQVNT
Sbjct: 66 EQFDGIELHIIGPLQTNKARAAMELAQAIHTLDRIKLAHMFARLAQEMGACPDLYIQVNT 125
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK 188
G E QK+G++P + D I L V GLMCIPP +P PHF LL +IA L
Sbjct: 126 GAEPQKAGVLP-ASADAFIAESVALDLPVAGLMCIPPVNEDPSPHFKLLGDIAARNGLNG 184
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ DFE A+A GAT VR+GS IFG+R
Sbjct: 185 LSMGMSGDFETAVAHGATHVRVGSAIFGDR 214
>gi|254485880|ref|ZP_05099085.1| conserved hypothetical protein TIGR00044 [Roseobacter sp. GAI101]
gi|214042749|gb|EEB83387.1| conserved hypothetical protein TIGR00044 [Roseobacter sp. GAI101]
Length = 228
Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 125/213 (58%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ +I + A R SV+L+AVSK+ +++ L G F EN++QEA+ KW
Sbjct: 14 LEDITTRIAKAEADAGRAPGSVTLIAVSKVQPLARVQAVLEQGHRCFGENRVQEAEGKWP 73
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++++D + L IG LQSNK + LFD I T+ R K A L+ + + ++IQ
Sbjct: 74 DFKQQFDGIDLHLIGPLQSNKARPAMELFDAIHTLDRPKLAKTLARLAQELGQCPDLFIQ 133
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P + F+ C Q L + GLMCIPP HF LL++IA
Sbjct: 134 VNTGEEDQKAGVLPREADTFIKEC-QDLDLPIRGLMCIPPVDEEAALHFALLAKIAARNG 192
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 193 LEGLSMGMSSDFEKAIALGATHVRVGSAIFGER 225
>gi|83949878|ref|ZP_00958611.1| alanine racemase domain protein [Roseovarius nubinhibens ISM]
gi|83837777|gb|EAP77073.1| alanine racemase domain protein [Roseovarius nubinhibens ISM]
Length = 216
Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 123/213 (57%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + I + A R SVSL+AVSK ++ L G +F EN++QEA KW
Sbjct: 3 LSEITEAIAKAEKYAGRAPGSVSLIAVSKKQPDARVEEVLDEGHRVFGENRVQEAAGKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+++D ++L IG LQ+NKV + + L I +V R K A ++ ++ ++IQ
Sbjct: 63 GFREKYDGIELHIIGPLQTNKVRQAMELAQAIHSVDRPKLAQTIARIAQEEGHCPDLFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI+P F+ CR L + GLMCIPP P HF LL++IA
Sbjct: 123 VNTGEEEQKAGILPKDADAFITECR-GLDLPLRGLMCIPPVDEEPSLHFALLAKIAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA GAT VR+GS IFG+R
Sbjct: 182 LDGLSMGMSGDFERAIALGATHVRVGSAIFGDR 214
>gi|149915694|ref|ZP_01904220.1| hypothetical protein RAZWK3B_07052 [Roseobacter sp. AzwK-3b]
gi|149810586|gb|EDM70429.1| hypothetical protein RAZWK3B_07052 [Roseobacter sp. AzwK-3b]
Length = 217
Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 88/213 (41%), Positives = 125/213 (58%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +I + A R + SV+L+AVSK+ ++++ L G F EN++QEA KW
Sbjct: 3 LEDIRNRIHKAERAAGRVEGSVTLIAVSKVQPNERVEAVLEMGHRCFGENRVQEAAGKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+ + + L IG LQ+NK + LF I +V R K AS ++ ++ +++Q
Sbjct: 63 EFRERFQGIDLHLIGPLQTNKARQAFDLFQTIHSVDRPKLASTIARIAQEEGHCPDIFLQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P F+ C+ L V+GLMCIPP P HF LL++IA
Sbjct: 123 VNTGEEDQKAGVLPADADKFINDCK-GMDLPVQGLMCIPPVDEEPSLHFALLAKIAERNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 182 LQGLSMGMSGDFEEAIALGATHVRVGSAIFGAR 214
>gi|218513523|ref|ZP_03510363.1| hypothetical protein Retl8_07286 [Rhizobium etli 8C-3]
Length = 131
Score = 165 bits (417), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 78/131 (59%), Positives = 97/131 (74%)
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
++ V+LFDVIETV REK A L+ EM +Q R +Y+QVNTG E QK+GI P+ T FV
Sbjct: 1 ADAVALFDVIETVDREKIARALAEEMKRQDRTPRLYVQVNTGLEPQKAGIAPDDTPAFVT 60
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATS 207
LCR + L +EGLMCIPPA NP PHF LL+++A +C + KLSMGM+ D+E AIA GATS
Sbjct: 61 LCRDELGLAIEGLMCIPPAEENPGPHFALLAKLASKCGVEKLSMGMSGDYETAIAFGATS 120
Query: 208 VRIGSGIFGER 218
VR+GS IFG R
Sbjct: 121 VRVGSAIFGAR 131
>gi|163743400|ref|ZP_02150780.1| alanine racemase domain protein [Phaeobacter gallaeciensis 2.10]
gi|161383394|gb|EDQ07783.1| alanine racemase domain protein [Phaeobacter gallaeciensis 2.10]
Length = 218
Score = 165 bits (417), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 123/213 (57%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ + +I + A RPK S L+AVSK+ ++++ L G F EN++QEA KW
Sbjct: 3 LQDIQARIHIAEENAGRPKGSAKLIAVSKVQPNERVEAVLEEGHRCFGENRVQEAVGKWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ D+ L IG LQSNK + + LF I T+ R K A L+ + +++Q
Sbjct: 63 DFAMRYSDLDLHLIGPLQSNKARQAMELFQSIHTLDRPKLAKALARLAQELGHCPKLFVQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI P + F+ C Q L +EGLMCIPPA P HF LL +IA
Sbjct: 123 VNTGEEPQKAGIPPREADAFIREC-QDMDLIIEGLMCIPPADEEPSLHFSLLGKIAVRNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ LSMGM+ DFE A+A GAT VR+GS IFG R
Sbjct: 182 LSGLSMGMSGDFETAVALGATHVRVGSAIFGAR 214
>gi|114767095|ref|ZP_01445978.1| alanine racemase domain protein [Pelagibaca bermudensis HTCC2601]
gi|114540748|gb|EAU43814.1| alanine racemase domain protein [Roseovarius sp. HTCC2601]
Length = 217
Score = 164 bits (416), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 127/213 (59%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L ++++ + A RP+ SV L+AVSK+ +++ L G +F ENK+QEA+ KW
Sbjct: 3 LTDIRERVAKAEAKAGRPEGSVELIAVSKVQPIERVEAVLEQGHRLFGENKVQEAQGKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L++ ++ V + IG LQ+NK + + LF I V R K A+ L+ + +++Q
Sbjct: 63 ALKERFEGVAVHLIGPLQTNKARQAMELFSAIHAVDRPKLANTLARLAQEMGHCPDLFVQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI+P F+ R L ++GLMCIPP P HF LL++IA
Sbjct: 123 VNTGEEPQKAGILPADADAFIKEVR-GLDLPLKGLMCIPPVEETPSLHFALLAKIAERNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AI+ GAT VR+GS IFGER
Sbjct: 182 LEGLSMGMSSDFEQAISLGATHVRVGSAIFGER 214
>gi|163739855|ref|ZP_02147262.1| hypothetical protein RGBS107_05389 [Phaeobacter gallaeciensis
BS107]
gi|161386889|gb|EDQ11251.1| hypothetical protein RGBS107_05389 [Phaeobacter gallaeciensis
BS107]
Length = 218
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 122/213 (57%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+Q + +I + A RPK S L+AVSK+ ++++ L G F EN++QEA KW
Sbjct: 3 IQDIQARIHIAEENAGRPKGSAKLIAVSKVQPNERVEAVLEEGHRCFGENRVQEAAGKWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ D+ L IG LQSNK + + LF I T+ R K A L+ + +++Q
Sbjct: 63 DFAMRYSDLDLHLIGPLQSNKARQAMELFQSIHTLDRSKLAKALARLAQELGHCPKLFVQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI P F+ C Q L +EGLMCIPPA P HF LL +IA
Sbjct: 123 VNTGEEPQKAGIPPRAADAFIREC-QDMDLIIEGLMCIPPADEEPSLHFSLLGKIAVRNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ LSMGM+ DFE A+A GAT VR+GS IFG R
Sbjct: 182 LSGLSMGMSGDFETAVALGATHVRVGSAIFGAR 214
>gi|163734310|ref|ZP_02141750.1| hypothetical protein RLO149_08699 [Roseobacter litoralis Och 149]
gi|161392318|gb|EDQ16647.1| hypothetical protein RLO149_08699 [Roseobacter litoralis Och 149]
Length = 218
Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 122/214 (57%), Gaps = 4/214 (1%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L Q+IE + A R SV L+AVSK+ +++ L G F EN++QEA KW
Sbjct: 4 LSDISQRIEKAVADAGRAAGSVKLIAVSKVQPDERVEAVLKEGHRCFGENRVQEAAGKWP 63
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP-VYI 124
R ++D V L IG LQ+NK + LF I T+ R K A + + + + P +++
Sbjct: 64 AFRDDYDGVDLHLIGPLQTNKARQAFDLFQSIHTLDRPKLAKAFA-RLAQDTGHCPEMFV 122
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVNTG E QK+G+ P+ FV CR L ++GLMCIPP HF LL++IA
Sbjct: 123 QVNTGEEPQKAGVFPSDADGFVAECR-ALDLPIKGLMCIPPIDEEASLHFALLAKIAERN 181
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AI+ GAT +R+GS IFG R
Sbjct: 182 GLAGLSMGMSDDFEKAISFGATHIRVGSAIFGAR 215
>gi|89052905|ref|YP_508356.1| hypothetical protein Jann_0414 [Jannaschia sp. CCS1]
gi|88862454|gb|ABD53331.1| Protein of unknown function UPF0001 [Jannaschia sp. CCS1]
Length = 217
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 121/197 (61%), Gaps = 2/197 (1%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIGS 81
R ++L+AVSK+ ++++ L+ G IF EN++QEA+ +W + +D + L IG
Sbjct: 19 RAAADITLIAVSKVQPTERVDAVLTEGHRIFGENRVQEAQGRWPDFQARFDGIDLHLIGP 78
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQ+NK + V +F I TV R K A L+ ++ ++IQVNTG E QK+G +P++
Sbjct: 79 LQTNKARQAVEMFGTIHTVDRPKLAKTLARLAQERGTSPDLFIQVNTGEEPQKAGCLPSE 138
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI 201
F+ R L + GLMCIPP P HF LL++IA+ L+ LSMGM+ DFE AI
Sbjct: 139 ADAFIADAR-AMDLPLLGLMCIPPVDEEPSLHFALLAKIAKRNGLSGLSMGMSSDFETAI 197
Query: 202 ASGATSVRIGSGIFGER 218
A GAT +R+GS IFGER
Sbjct: 198 AQGATHIRVGSAIFGER 214
>gi|221640312|ref|YP_002526574.1| Alanine racemase domain-containing protein [Rhodobacter sphaeroides
KD131]
gi|221161093|gb|ACM02073.1| Alanine racemase domain protein [Rhodobacter sphaeroides KD131]
Length = 221
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 124/213 (58%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +I + A R SV L+AVSK+ +++ L G IF EN +QEA+ KW
Sbjct: 2 LETIQTRIAAAEAAAGRAPGSVELIAVSKVQPLERVVAVLEAGHRIFGENYVQEAQGKWP 61
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ + + + IG LQ+NK V LF+ I T+ R A L+ ++ +++Q
Sbjct: 62 DLRERFGPLSVHMIGPLQTNKAKVAVGLFEAIHTLDRPSLAEKLARLAQERGACPRLFVQ 121
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P FV CR L VEGLMCIPP + PHF LL+ IA
Sbjct: 122 VNTGEEPQKAGVLPADADGFVAACR-GMDLPVEGLMCIPPEGCDSAPHFALLAAIAARNG 180
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA+GAT VR+GS IFG R
Sbjct: 181 LQGLSMGMSGDFEAAIAAGATHVRVGSAIFGAR 213
>gi|126463262|ref|YP_001044376.1| alanine racemase domain-containing protein [Rhodobacter sphaeroides
ATCC 17029]
gi|126104926|gb|ABN77604.1| alanine racemase domain protein [Rhodobacter sphaeroides ATCC
17029]
Length = 221
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 123/213 (57%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +I + A SV L+AVSK+ +++ L G IF EN +QEA+ KW
Sbjct: 2 LETIQTRIAAAEAAAGLAPGSVELIAVSKVQPLERVVAVLEAGHRIFGENYVQEAQGKWP 61
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ + + + IG LQ+NK V LF+ I T+ R A L+ ++ +++Q
Sbjct: 62 DLRERFGPLSVHMIGPLQTNKAKVAVGLFEAIHTLDRPSLAEKLARLAQERGACPRLFVQ 121
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P FV CR L VEGLMCIPP + PHF LL+ IA
Sbjct: 122 VNTGEEPQKAGVLPADADGFVAACR-GMDLPVEGLMCIPPEGCDSAPHFALLAAIAARNG 180
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA+GAT VR+GS IFG R
Sbjct: 181 LRGLSMGMSGDFEAAIAAGATHVRVGSAIFGAR 213
>gi|159042598|ref|YP_001531392.1| alanine racemase domain-containing protein [Dinoroseobacter shibae
DFL 12]
gi|157910358|gb|ABV91791.1| alanine racemase domain protein [Dinoroseobacter shibae DFL 12]
Length = 218
Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/207 (42%), Positives = 124/207 (59%), Gaps = 2/207 (0%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I +A A R ++L+AVSK+ ++ L+ G ++ EN++QEA+ KW R+++
Sbjct: 9 RIGAAARKAGRDPAEITLIAVSKVQPLDRVEAVLAEGHRVYGENRVQEAQGKWPAFREKY 68
Query: 73 D-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
+ L IG LQSNK V LFD I TV R K A L+ ++ + +++QVNTG E
Sbjct: 69 SGIDLHLIGPLQSNKTRPAVELFDAIHTVDRAKLARRLADHAQERGQSPDIFVQVNTGDE 128
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSM 191
QK+G ++ V CR L ++GLMCIPP P HF LL+++A LT LSM
Sbjct: 129 TQKAGCALSEVDALVTECR-ALDLPLKGLMCIPPIDEEPSLHFALLAKLAARNGLTGLSM 187
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DFE AIA GAT +R+GS IFG+R
Sbjct: 188 GMSGDFESAIAQGATHIRVGSAIFGDR 214
>gi|254476253|ref|ZP_05089639.1| conserved hypothetical protein TIGR00044 [Ruegeria sp. R11]
gi|214030496|gb|EEB71331.1| conserved hypothetical protein TIGR00044 [Ruegeria sp. R11]
Length = 218
Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 121/213 (56%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ + +I + A R S L+AVSK+ ++++ L+ G F EN++QEA KW
Sbjct: 3 LQDIQSRIHTAEEKAGRAVGSTQLIAVSKVQPNERVESVLNEGHRCFGENRVQEAAGKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+D + L IG LQ+NK + + LF I TV R K A ++ + ++IQ
Sbjct: 63 DFATRFDGLDLHLIGPLQTNKARQAMELFQNIHTVDRPKLAKTIARLAQELGHCPKLFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI P FV CR L +EGLMCIPPA P HF LL +IA
Sbjct: 123 VNTGEEPQKAGIAPRDADAFVKECRD-MDLVIEGLMCIPPAEEEPSLHFSLLRKIAERNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LT LSMGM+ DFE A+A GAT VR+GS IFG R
Sbjct: 182 LTGLSMGMSGDFESAVALGATHVRVGSAIFGAR 214
>gi|114329007|ref|YP_746164.1| hypothetical protein GbCGDNIH1_2343 [Granulibacter bethesdensis
CGDNIH1]
gi|114317181|gb|ABI63241.1| hypothetical exported protein [Granulibacter bethesdensis CGDNIH1]
Length = 236
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/194 (45%), Positives = 119/194 (61%), Gaps = 1/194 (0%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV-QLRFIGSLQSN 85
+V+LVAVSK + A GQ +F ENK+QEA K++PLR E D L IG LQ+N
Sbjct: 25 TVTLVAVSKTHGPDAVAAARRAGQSVFGENKVQEALTKFLPLRDEADPPTLHLIGGLQTN 84
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
K E V + DVIE++ R + A L+L K+ R + +QVN G E QKSGI + F
Sbjct: 85 KAREAVRVADVIESLDRPRLADALALAAEKEKRLPRLLVQVNVGDEPQKSGIPTREADSF 144
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA 205
+ +CR ++ + G+M IPPA +P P+F L+ A L +SMGM+ DFE AIA+GA
Sbjct: 145 IEMCRHRFGDALCGVMGIPPADVDPDPYFLWLAAAAARHGLPVISMGMSGDFEQAIANGA 204
Query: 206 TSVRIGSGIFGERP 219
T VRIG+ IFG RP
Sbjct: 205 THVRIGTAIFGARP 218
>gi|77464422|ref|YP_353926.1| hypothetical protein RSP_0844 [Rhodobacter sphaeroides 2.4.1]
gi|77388840|gb|ABA80025.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
Length = 221
Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/213 (43%), Positives = 123/213 (57%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +I + A R SV L+AVSK+ +++ L G IF EN +QEA+ KW
Sbjct: 2 LETIQTRIAAAEAAAGRAPGSVELIAVSKVQPLERVVAVLEAGHRIFGENYVQEAQGKWP 61
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ + + + IG LQ+NK V LF+ I T+ R A L+ ++ +++Q
Sbjct: 62 DLRERFGPLSVHMIGPLQTNKAKVAVGLFEAIHTLDRPSLAEKLARLAQERGACPRLFVQ 121
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P FV CR L VEGLMCIPP + PHF LL+ IA
Sbjct: 122 VNTGEEPQKAGVLPADADGFVAACR-AMDLPVEGLMCIPPEGCDSAPHFALLAAIAARNG 180
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 181 LQGLSMGMSGDFEAAIAVGATHVRVGSAIFGAR 213
>gi|148555765|ref|YP_001263347.1| alanine racemase domain-containing protein [Sphingomonas wittichii
RW1]
gi|148500955|gb|ABQ69209.1| alanine racemase domain protein [Sphingomonas wittichii RW1]
Length = 221
Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 126/214 (58%), Gaps = 3/214 (1%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L + +I+++A LA R ++ L+A+SK ++ I ++ GQ+ F EN++QEA+ KW
Sbjct: 10 RLADIRARIDHAAALADRDPAAIELIAISKTKPAEAIAPLIAAGQIGFGENRVQEAETKW 69
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ ++L +G LQSNK E V+LFD I +V R L+ M R +IQ
Sbjct: 70 PALREGPSLRLHLVGQLQSNKAKEAVALFDAIHSVDRPSLIEALAKAMDGARRRPDCFIQ 129
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
VN G E QK G ++ IL R + L V GLM +PPA P P+F LL+++A+
Sbjct: 130 VNIGAEEQKGGCAIDELP--AILARARDAGLPVAGLMAVPPADVEPAPYFALLAKLAKRH 187
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE A+ GAT VRIG+ +FG R
Sbjct: 188 GLAGLSMGMSGDFETAVMLGATHVRIGTALFGPR 221
>gi|110677463|ref|YP_680470.1| hypothetical protein RD1_0046 [Roseobacter denitrificans OCh 114]
gi|109453579|gb|ABG29784.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 218
Score = 160 bits (406), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 119/213 (55%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L Q+IE + A R + SV L+AVSK+ ++++ L G F EN++QEA KW
Sbjct: 4 LSDISQRIEKAVAQAGRDRGSVKLIAVSKVQPNERVEAVLKEGHRCFGENRVQEAAGKWP 63
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R + D V L IG LQ+NK + LF I T+ R K A + + +++Q
Sbjct: 64 AFRDDHDGVDLHLIGPLQTNKARQAFDLFQSIHTLDRPKLAKTCARLAQEIGHCPELFVQ 123
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G+ P+ F+ CR L V GLMCIPP HF LL++IA
Sbjct: 124 VNTGEEPQKAGVAPSDADAFIAECR-ALDLPVRGLMCIPPIDEEASLHFALLAKIAERNG 182
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AI+ GAT +R+GS IFG R
Sbjct: 183 LAGLSMGMSDDFEKAISFGATHIRVGSAIFGAR 215
>gi|254437301|ref|ZP_05050795.1| conserved hypothetical protein TIGR00044 [Octadecabacter
antarcticus 307]
gi|198252747|gb|EDY77061.1| conserved hypothetical protein TIGR00044 [Octadecabacter
antarcticus 307]
Length = 217
Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 123/215 (57%), Gaps = 6/215 (2%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ ++IE + A R S L+AVSK+ +K ++ L G F EN++QEA KW
Sbjct: 3 LQEIIKRIEAAEAKAGRSVGSTKLIAVSKVQPNKLVQTILEQGHRTFGENRVQEAAVKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+++D + L IG LQ+NK + L I+T+ R K A + + +YIQ
Sbjct: 63 AFREQFDGIDLHIIGPLQTNKARAAMELAQAIQTLDRIKLARTFARLAQEMGACPDIYIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLN--VEGLMCIPPAMGNPKPHFYLLSEIARE 183
VNTG E QK+G++P+ F+ ++ L+ V GLMCIPPA P HF LL EIA
Sbjct: 123 VNTGAEPQKAGVLPDDADAFI---KEAVALDLPVAGLMCIPPADEEPSLHFALLGEIAAR 179
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE A+A GAT VR+GS IFG R
Sbjct: 180 NGLNGLSMGMSGDFETAVAHGATLVRVGSAIFGSR 214
>gi|260574451|ref|ZP_05842455.1| alanine racemase domain protein [Rhodobacter sp. SW2]
gi|259023347|gb|EEW26639.1| alanine racemase domain protein [Rhodobacter sp. SW2]
Length = 215
Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/192 (44%), Positives = 111/192 (57%), Gaps = 2/192 (1%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIGSLQSNK 86
V L+AVSK+ ++ L G +F EN +QEA+ KW LR + VQ+ IG LQ+NK
Sbjct: 24 VQLIAVSKVQPLTRVVAVLEQGHRLFGENYVQEAQGKWPDLRARFGAVQVHMIGPLQTNK 83
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V LFD I T+ R A L+ + +++QVNTG E QK+G++P F+
Sbjct: 84 AKVAVDLFDAIHTLDRPSLAEKLARLAQDRGTCPQLFVQVNTGAEPQKTGVLPADADAFI 143
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT 206
CR L + GLMCIPP + PHF L+ IA L LSMGM+ DFE AIA+GAT
Sbjct: 144 ATCR-AMDLPLAGLMCIPPEGTDSTPHFTELAAIAARNGLAGLSMGMSSDFEAAIAAGAT 202
Query: 207 SVRIGSGIFGER 218
VR+GS IFG R
Sbjct: 203 HVRVGSAIFGAR 214
>gi|84500586|ref|ZP_00998835.1| alanine racemase domain protein [Oceanicola batsensis HTCC2597]
gi|84391539|gb|EAQ03871.1| alanine racemase domain protein [Oceanicola batsensis HTCC2597]
Length = 240
Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 91/213 (42%), Positives = 119/213 (55%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +I +A A R V+L+AVSKM + +R L G F EN++QEA KW
Sbjct: 26 LTEITSRIAKAAEGAGRAPSDVTLIAVSKMQPDENVRSVLEDGHRTFGENRVQEAAGKWP 85
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R + DV L IG LQ+NK + + L I +V R K A ++ ++IQ
Sbjct: 86 AFRDAFGDVDLHIIGPLQTNKARQAMELAQSIHSVDRPKLARTIARLADDIGSCPDLFIQ 145
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P++T FV R L + GLMCIPP P HF LL+++A
Sbjct: 146 VNTGEEPQKAGVLPDETDGFVSEVR-ALGLPLRGLMCIPPVEEAPSLHFALLAKLAARNG 204
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 205 LEGLSMGMSGDFEQAIALGATHVRVGSAIFGAR 237
>gi|326388562|ref|ZP_08210155.1| hypothetical protein Y88_2962 [Novosphingobium nitrogenifigens DSM
19370]
gi|326206813|gb|EGD57637.1| hypothetical protein Y88_2962 [Novosphingobium nitrogenifigens DSM
19370]
Length = 234
Score = 158 bits (399), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 126/217 (58%), Gaps = 6/217 (2%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L + +I+++A +A R + V+LVA+SK + I ++ GQ +F EN++QEA+ K
Sbjct: 19 SPLAAIRARIDHAAKIAGRKGEDVTLVAISKTKPASAILPLIAEGQRVFGENRVQEAQDK 78
Query: 65 WIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W L + + D +L +G LQSNK V LFD I ++ R + L+ M K R +P++
Sbjct: 79 WPALIEAYPDCKLHLVGQLQSNKAEAAVRLFDCIHSLDRPSLLTALAHAMDKVGRRVPLF 138
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+QVN G E QK G D L Q L V+GLMC+PPA P F LL ++A
Sbjct: 139 VQVNIGEEEQKGGCA---IADLPALLTQARAADLPVQGLMCVPPAGIEAAPFFALLGKLA 195
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L+ LSMGM+ DFE A+ GAT VR+GS +FG R
Sbjct: 196 ADHGLSGLSMGMSEDFETAVMLGATHVRVGSALFGRR 232
>gi|85375194|ref|YP_459256.1| hypothetical protein ELI_11835 [Erythrobacter litoralis HTCC2594]
gi|84788277|gb|ABC64459.1| hypothetical protein ELI_11835 [Erythrobacter litoralis HTCC2594]
Length = 220
Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 124/213 (58%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +I + +A+R +D V+L+AVSK + I L G +F EN++QE K+KW
Sbjct: 8 LEETEARIARACTIAQRDRDEVTLIAVSKTHPVEAIEPLLEQGHRVFGENRVQEVKEKWP 67
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ + DV+L IG LQSNK + V+LFD I ++ R L M K + +P ++Q
Sbjct: 68 ALREAYSDVELHLIGQLQSNKAEDAVALFDCIHSLDRPSLVKALGKAMEKAGKQVPCFLQ 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VN G E QK G + + R+ + V GLM IPP P P F LL ++ARE +
Sbjct: 128 VNIGDEDQKGGCPIGEVPAMLERAREA-GIPVVGLMSIPPFDIEPAPFFALLDKLARENE 186
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L SMGM+ DFE AI GAT VR+G+ +FG+R
Sbjct: 187 LEARSMGMSSDFETAIMLGATHVRVGTALFGDR 219
>gi|320354290|ref|YP_004195629.1| alanine racemase domain-containing protein [Desulfobulbus
propionicus DSM 2032]
gi|320122792|gb|ADW18338.1| alanine racemase domain protein [Desulfobulbus propionicus DSM
2032]
Length = 235
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 127/217 (58%), Gaps = 14/217 (6%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD 73
I +A + R D+V LVAVSK V + I A++ GQ++F EN LQEA K IP +
Sbjct: 13 IATAARRSGRHPDTVQLVAVSKQVGVEAICEAVAGGQMLFGENYLQEAADK-IP-QLPPT 70
Query: 74 VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ 133
VQ FIG LQSNK +++ LF ++ETV R K A L L + + L + IQVN G E Q
Sbjct: 71 VQWHFIGHLQSNKAAQVAELFTMVETVDRFKVAKALDLHAKRLDKHLSILIQVNIGREKQ 130
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLTK-- 188
KSG+MP +T + + + L V GLM +PP +P +P+F L E+A++ + K
Sbjct: 131 KSGVMPEETTELLHAISAETNLRVRGLMALPPFFSDPEKSRPYFRALRELAQQLAVKKLF 190
Query: 189 -------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D+ +AI GAT VR+G+ +FG R
Sbjct: 191 HDNDAIELSMGMSNDYPVAIEEGATIVRVGTALFGSR 227
>gi|332187736|ref|ZP_08389471.1| alanine racemase, N-terminal domain protein [Sphingomonas sp. S17]
gi|332012302|gb|EGI54372.1| alanine racemase, N-terminal domain protein [Sphingomonas sp. S17]
Length = 219
Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 84/191 (43%), Positives = 113/191 (59%), Gaps = 2/191 (1%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKV 87
+L+AVSK D+ IR L G +F EN++QEA KW LR ++ V+L IG LQSNK
Sbjct: 29 TLIAVSKTHDADTIRPLLDAGHRVFGENRVQEAAAKWPALRADYPGVELHLIGQLQSNKA 88
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
+ V+LFDVI TV R + L+ M K + ++QVN G E QK G + +
Sbjct: 89 EDAVALFDVIHTVDRPSLIAGLAQAMDKSGKRPDCFLQVNIGEEEQKGGCAIAEVPAMLA 148
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATS 207
R L GLM IPP + P+F LL+++ARE LTKLSMGM+ D+E+A GA+
Sbjct: 149 QARAA-GLPTIGLMAIPPHGLDAAPYFALLAKMARELGLTKLSMGMSEDYEVAAMLGASH 207
Query: 208 VRIGSGIFGER 218
VR+GS +FG R
Sbjct: 208 VRVGSALFGAR 218
>gi|296282181|ref|ZP_06860179.1| hypothetical protein CbatJ_01105 [Citromicrobium bathyomarinum
JL354]
Length = 223
Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 124/225 (55%), Gaps = 10/225 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +++I + +AKR + V+L+AVSK ++I L GQ +F EN++QE
Sbjct: 1 MDSAAALTQVEERIVRACTIAKRERKEVNLIAVSKTHPVERIEPLLEAGQRLFGENRVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW LR+ + DV+L IG LQSNK + +LFDVI ++ R L+ K R
Sbjct: 61 AQDKWPELRERFPDVELHLIGQLQSNKAEDAAALFDVIHSLDRPSLLKALAKAYDKLGRR 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPHFYLL 177
+P +IQV+ G E QK G D L Q + + GLMCIPPA P P F LL
Sbjct: 121 VPCFIQVDVGEEDQKGGCA---IADLPALIDQAREAEIPLLGLMCIPPADKEPAPFFALL 177
Query: 178 SEIAR----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR E SMGM+ D+E AI GAT +R+GS +FG R
Sbjct: 178 GELARRHEPEPGAWAQSMGMSGDYETAIMLGATHIRVGSALFGAR 222
>gi|126724360|ref|ZP_01740203.1| alanine racemase domain protein [Rhodobacterales bacterium
HTCC2150]
gi|126705524|gb|EBA04614.1| alanine racemase domain protein [Rhodobacterales bacterium
HTCC2150]
Length = 217
Score = 154 bits (389), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 81/190 (42%), Positives = 112/190 (58%), Gaps = 2/190 (1%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIGSLQSNKVS 88
L+AVSK+ ++++ L G +F ENK+QEA KW R+++ V + +G +Q+NK
Sbjct: 25 LIAVSKVQPNERVAAVLDQGHRLFGENKVQEAAGKWPEFREKYGAVDVHLLGPVQTNKAR 84
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
+ + LF I ++ R K A+ L+ + ++IQVNTG E QK+GI+P FV
Sbjct: 85 QAMELFQAIHSLDRPKLANTLARLAQELGHCPDLFIQVNTGAEPQKAGILPEDADKFVET 144
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSV 208
CR L V GLMCIPP P PHF L +A+ L LSMGM+ DFE AI GAT +
Sbjct: 145 CR-ALDLPVIGLMCIPPFEEPPAPHFVALGHMAKRNGLACLSMGMSGDFEEAIEHGATHI 203
Query: 209 RIGSGIFGER 218
R+GS IFG R
Sbjct: 204 RVGSAIFGNR 213
>gi|149185001|ref|ZP_01863318.1| hypothetical protein ED21_18147 [Erythrobacter sp. SD-21]
gi|148831112|gb|EDL49546.1| hypothetical protein ED21_18147 [Erythrobacter sp. SD-21]
Length = 221
Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 119/220 (54%), Gaps = 6/220 (2%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
G+ L+ + I + A+R ++LVA+SK + I L G F EN++QEA +
Sbjct: 5 GSPLEQVRSSIAQACNRARRDPGDITLVAISKRHTAATIEPLLIEGHRHFGENRVQEAAE 64
Query: 64 KWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KW LR+ VQL +G LQSNK E +LFDVI ++ R L+ K R +P
Sbjct: 65 KWPALREAHPAVQLHLVGQLQSNKAEEAAALFDVIHSLDRPSLVKALAKAFDKTGRLVPC 124
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPHFYLLSEI 180
++QV+ G E QK G D L Q ++ GLMC+PPA P P F L ++
Sbjct: 125 FVQVDVGDEPQKGGC---PVGDLPALLTQARDADIPLAGLMCLPPADIEPAPFFAFLDKL 181
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
AR+ L SMGM+ D+E AI GAT +R+G+ +FGERP
Sbjct: 182 ARDHGLEGRSMGMSGDYETAIMLGATHIRVGTALFGERPA 221
>gi|85710049|ref|ZP_01041114.1| hypothetical protein NAP1_14228 [Erythrobacter sp. NAP1]
gi|85688759|gb|EAQ28763.1| hypothetical protein NAP1_14228 [Erythrobacter sp. NAP1]
Length = 228
Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 120/203 (59%), Gaps = 6/203 (2%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFI 79
A+R V+L+AVSK + KI L G +F EN++QEA++KW LR+ + V+L I
Sbjct: 26 ARREPADVTLIAVSKTHPAHKIEPLLEAGHRVFGENRVQEAQEKWPQLREAYSGVELHLI 85
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G LQSNK + V LFDVI ++ R L+ M K + +P ++QVN G E QK G
Sbjct: 86 GQLQSNKAEDAVELFDVIHSLDRSSLLKALAKAMDKSGKRVPCFVQVNIGDEDQKGGCPI 145
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLT----KLSMGMTR 195
++ +F+ R + + GLMC+PPA P F L+++A++ LT LSMGM+
Sbjct: 146 SELPEFLEKVR-AANVPIAGLMCLPPADTEAAPFFAFLAKLAKDNGLTGDEGSLSMGMSG 204
Query: 196 DFELAIASGATSVRIGSGIFGER 218
D+E A+ GAT VR+G+ +FG R
Sbjct: 205 DYETAVQLGATHVRVGTALFGAR 227
>gi|241761382|ref|ZP_04759470.1| alanine racemase domain protein [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|260753297|ref|YP_003226190.1| alanine racemase domain protein [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|283856197|ref|YP_161877.2| alanine racemase domain-containing protein [Zymomonas mobilis
subsp. mobilis ZM4]
gi|241374289|gb|EER63786.1| alanine racemase domain protein [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|258552660|gb|ACV75606.1| alanine racemase domain protein [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|283775193|gb|AAV88766.2| alanine racemase domain protein [Zymomonas mobilis subsp. mobilis
ZM4]
Length = 232
Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 120/213 (56%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L V + KIE +A +A R D + L+A+SK+ ++ ++ GQ +F EN++QEA KW
Sbjct: 20 LAVVRAKIEKAAKIAGRNPDDIELIAISKLHPAEAALPLIAEGQRVFGENRVQEALGKWP 79
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
PL K D++L +G LQSNK V LFD I +V R L M + +IQ
Sbjct: 80 PLIKAHPDIRLHCVGQLQSNKAKTAVELFDAIHSVDRPSLIEALGRAMESTEKKPECFIQ 139
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VN G E QK G TK + CR L V GLM +PP +P P+F L ++A +
Sbjct: 140 VNIGEEDQKGGCDIADTKAILQQCRDA-GLPVIGLMSVPPLEVDPAPYFALTVKMAHDLA 198
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +S+GM+ D+ELAI GAT +R+G+ +FG R
Sbjct: 199 LPAVSIGMSADYELAITLGATHIRVGTALFGHR 231
>gi|330993134|ref|ZP_08317072.1| UPF0001 protein [Gluconacetobacter sp. SXCC-1]
gi|329759904|gb|EGG76410.1| UPF0001 protein [Gluconacetobacter sp. SXCC-1]
Length = 204
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/195 (43%), Positives = 114/195 (58%), Gaps = 2/195 (1%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNK 86
+ LVAVSK + AL GQ +F EN++QEA K+ LR W D++L IG LQ+NK
Sbjct: 1 MDLVAVSKFHPQASVIAALEAGQRLFGENRVQEAAAKFPALRTRWPDLRLHIIGGLQTNK 60
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
E V + D+IE++ R + L+ + R + +QVNTG E QKSG+ + F+
Sbjct: 61 ALEAVRIADMIESLDRPALSDALARAADRAGRLPGLLVQVNTGDEGQKSGVRLEEADAFI 120
Query: 147 ILCRQKYQLNV-EGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA 205
+++ V GLMCIPP +P PHF L+ +A L +SMGM+ DFE AIA GA
Sbjct: 121 NASLERFGPAVVRGLMCIPPHDRDPTPHFRTLATMAHRHGLDVVSMGMSADFERAIACGA 180
Query: 206 TSVRIGSGIFGERPC 220
T VR+GS IFG RP
Sbjct: 181 TLVRVGSAIFGARPA 195
>gi|330813401|ref|YP_004357640.1| YggS-like protein [Candidatus Pelagibacter sp. IMCC9063]
gi|327486496|gb|AEA80901.1| YggS-like protein [Candidatus Pelagibacter sp. IMCC9063]
Length = 216
Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 111/194 (57%), Gaps = 1/194 (0%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKV 87
+++AVSK I+ + G +F ENK+QEAK+KW L+ ++L IG LQSNK
Sbjct: 23 TVIAVSKTFPLGHIKPLIDHGHRVFGENKVQEAKQKWSELKDSLKGLELHLIGGLQSNKS 82
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
E V LFD I +V K AS LS K S +IQVN G E QKSG+ + ++ +
Sbjct: 83 KEAVQLFDYIHSVDSMKLASELSKAEAKLSVKRKYFIQVNVGMEEQKSGVSKKEVENLLK 142
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATS 207
C + LNV GLMCIPP +P PHF L+E+ L +SMGM+ D+ A G+T
Sbjct: 143 YCVNEKNLNVIGLMCIPPFDQDPTPHFNHLNELNNHLGLKFISMGMSDDYMSAGKCGSTH 202
Query: 208 VRIGSGIFGERPCQ 221
VRIGS IFG R Q
Sbjct: 203 VRIGSKIFGSRSNQ 216
>gi|260425972|ref|ZP_05779951.1| pyridoxal phosphate enzyme, YggS family [Citreicella sp. SE45]
gi|260420464|gb|EEX13715.1| pyridoxal phosphate enzyme, YggS family [Citreicella sp. SE45]
Length = 189
Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 113/187 (60%), Gaps = 2/187 (1%)
Query: 33 VSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIV 91
+SK+ +++ L G +F ENK+QEA+ KW ++ V + IG LQ+NK + +
Sbjct: 1 MSKVQPLERVEAVLEEGHRLFGENKVQEARGKWPEFISRFEGVSVHLIGPLQTNKARQAM 60
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
LF I +V R K A+ ++ + + +++QVNTG E QK+G++P + F+ R
Sbjct: 61 ELFSAIHSVDRPKLATTIARLAQEMGQCPDLFLQVNTGEEPQKAGVLPAEADAFIAEVR- 119
Query: 152 KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIG 211
L V+GLMCIPPA P HF LL++IA L LSMGM+ DFE AIA GAT VR+G
Sbjct: 120 ALDLPVKGLMCIPPAEETPSLHFALLAKIAERNGLAGLSMGMSSDFEEAIALGATHVRVG 179
Query: 212 SGIFGER 218
S IFGER
Sbjct: 180 SAIFGER 186
>gi|87198458|ref|YP_495715.1| hypothetical protein Saro_0433 [Novosphingobium aromaticivorans DSM
12444]
gi|87134139|gb|ABD24881.1| Protein of unknown function UPF0001 [Novosphingobium
aromaticivorans DSM 12444]
Length = 191
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/192 (40%), Positives = 114/192 (59%), Gaps = 2/192 (1%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNK 86
++LVAVSK ++ I ++ GQ +F EN++QEA+ KW +R D+ L IG LQSNK
Sbjct: 1 MTLVAVSKTKPAEAILDLVAQGQRVFGENRVQEAQAKWPAIRAAHPDISLHLIGQLQSNK 60
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
+ ++LFD I ++ R + L+ K + +P ++QVN G E QK G +
Sbjct: 61 AEDAIALFDCIHSLDRPSLVAALAKAQDKLGKRVPCFVQVNIGAEEQKGGCAVADLPALL 120
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT 206
R+K ++V GLMC+PPA P F LL ++A + L+ LSMGM+ D E A+ GAT
Sbjct: 121 ADAREKG-IDVVGLMCVPPAGIEAAPFFALLDKLADDNGLSGLSMGMSDDLETAVQLGAT 179
Query: 207 SVRIGSGIFGER 218
VR+GS +FGER
Sbjct: 180 HVRVGSALFGER 191
>gi|103488501|ref|YP_618062.1| hypothetical protein Sala_3024 [Sphingopyxis alaskensis RB2256]
gi|98978578|gb|ABF54729.1| Protein of unknown function UPF0001 [Sphingopyxis alaskensis
RB2256]
Length = 220
Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 117/215 (54%), Gaps = 2/215 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++L + I ++A A+R D + L+AVSK D+ IR + GQ F EN++QEA K
Sbjct: 6 DRLAEVQGHIADAARRARRRPDEICLIAVSKTHDADAIRPLIVAGQRHFGENRVQEATAK 65
Query: 65 WIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W LR E DV L IG LQSNK E V+LFD I +V R L+ K + ++
Sbjct: 66 WPALRAELPDVVLHLIGRLQSNKAEEAVALFDAIHSVDRSSLVQALAKACEKTGKRPQLF 125
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVN G E QK G P ++ L + GLM IPPA P P F LL E+A
Sbjct: 126 VQVNIGNEEQKGGC-PVADLPALLAEATAAGLQIAGLMAIPPADIEPAPFFALLDELAAR 184
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L SMGM+ D+E A+ GAT VR+G+ +FG R
Sbjct: 185 HALPLRSMGMSGDYETAVMLGATHVRVGTALFGAR 219
>gi|71083067|ref|YP_265786.1| hypothetical protein SAR11_0361 [Candidatus Pelagibacter ubique
HTCC1062]
gi|91762507|ref|ZP_01264472.1| hypothetical protein PU1002_04541 [Candidatus Pelagibacter ubique
HTCC1002]
gi|71062180|gb|AAZ21183.1| hypothetical protein SAR11_0361 [Candidatus Pelagibacter ubique
HTCC1062]
gi|91718309|gb|EAS84959.1| hypothetical protein PU1002_04541 [Candidatus Pelagibacter ubique
HTCC1002]
Length = 216
Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 111/190 (58%), Gaps = 2/190 (1%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVS 88
++AVSK + I + G + F ENK+QEA KW+ ++ + +QL IG LQ+NKV
Sbjct: 27 IIAVSKTFPIENILPLIEYGHLHFGENKVQEALDKWVHIKNQNPSIQLHLIGRLQTNKVK 86
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
+ +FD I + EK A+ ++ E KQ + ++IQVN G E QKSGI + DF
Sbjct: 87 VALRIFDYIHALDSEKLANKIADEQTKQGKKPKIFIQVNIGNENQKSGINKERLSDFYKF 146
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSV 208
C+ L++ G MCIPP N K +F ++EI +E +LSMGM+ D+ AI AT V
Sbjct: 147 CKN-LNLDIIGTMCIPPNDDNTKKYFSEMNEINQELDFKELSMGMSGDYLEAIRYNATYV 205
Query: 209 RIGSGIFGER 218
R+GS IFG R
Sbjct: 206 RVGSKIFGSR 215
>gi|291279388|ref|YP_003496223.1| hypothetical protein DEFDS_0997 [Deferribacter desulfuricans SSM1]
gi|290754090|dbj|BAI80467.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 228
Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 133/225 (59%), Gaps = 16/225 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L++ ++IE +AI + R KD + LVAVSK ++KI A +CGQ +F EN++QEA KK
Sbjct: 6 LEIIMERIEKAAIKSGRAKDDIVLVAVSKTFPAEKIVEAYNCGQRVFGENRVQEALKKIE 65
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR ++ D++ IG LQ+NKV + + F +I +V R + A L++ K + IQ
Sbjct: 66 GLRDKFEDIEFHMIGHLQTNKVRYLKNNFSLIHSVDRIELAELINKYAKKNGLTQDILIQ 125
Query: 126 VNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
VN E QKSG++ ++ +FV+ C L ++GLM IPP + + +P F ++E
Sbjct: 126 VNIAEEPQKSGVLLKDYDRLVEFVLNCD---NLKLKGLMMIPPLVDDAEVNRPFFAKMNE 182
Query: 180 I------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ LSMGM+ DFE+AI GA VRIGS IFG+R
Sbjct: 183 LFLKTNDRYNIQMDYLSMGMSDDFEIAIEEGANMVRIGSAIFGKR 227
>gi|253700158|ref|YP_003021347.1| alanine racemase domain protein [Geobacter sp. M21]
gi|251775008|gb|ACT17589.1| alanine racemase domain protein [Geobacter sp. M21]
Length = 230
Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 123/229 (53%), Gaps = 13/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L ++++ +A+ A R D+V LVAVSK + I A +CGQ IF EN +QE
Sbjct: 1 MSVAENLGKIRERVRQAALRAGREPDAVRLVAVSKTKPAAAIEEAFACGQQIFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L K D+ FIG+LQSNKV +I + D+I +V R A+ + + +
Sbjct: 61 LVGKQAELPK--DISWHFIGNLQSNKVRQITGMVDLIHSVDRLSLATEIDRQWGALGKVC 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V IQVN E K G + V + L V GLM +PP +P +P+F L
Sbjct: 119 EVLIQVNISQEETKGGTSSEELFQLVRDAAKLPNLRVVGLMTMPPFFDDPEGARPYFREL 178
Query: 178 SEIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ARE ++ +LSMGM+ DFE AI GAT VR+GS +FGER
Sbjct: 179 RELARELEAAAIPGVEMRELSMGMSGDFEAAIEEGATLVRVGSALFGER 227
>gi|262277792|ref|ZP_06055585.1| pyridoxal phosphate enzyme, YggS family [alpha proteobacterium
HIMB114]
gi|262224895|gb|EEY75354.1| pyridoxal phosphate enzyme, YggS family [alpha proteobacterium
HIMB114]
Length = 211
Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 127/220 (57%), Gaps = 10/220 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ K+++ ++ I +K ++AVSK + I+ + G + + ENK+QE
Sbjct: 1 MSIVQNLENIKKELVSNNINSK-------IIAVSKTFELSHIQPLIDHGHLAYGENKVQE 53
Query: 61 AKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
AK+KW L K ++QL IG LQ+NK + V LF I +V REK L+ +
Sbjct: 54 AKRKWEELLKINNNIQLHLIGGLQTNKSKDAVKLFHYIHSVDREKLVDTLASAETNLNLK 113
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++QVNTG E QKSG+ T+ ++K +++ GLMCIPP + K HF +L E
Sbjct: 114 RKYFLQVNTGDEDQKSGVSIENTEQLYNYAQKK--IDIIGLMCIPPVEEDSKKHFEILRE 171
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ + L +LSMGM+ D+ A A+GAT VR+GS IFG R
Sbjct: 172 LSIKLNLKELSMGMSHDYLEAGANGATYVRVGSKIFGARD 211
>gi|195953925|ref|YP_002122215.1| alanine racemase domain protein [Hydrogenobaculum sp. Y04AAS1]
gi|195933537|gb|ACG58237.1| alanine racemase domain protein [Hydrogenobaculum sp. Y04AAS1]
Length = 224
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 129/225 (57%), Gaps = 14/225 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +++ +KIE +A+ A R K+ + L+AV+K V I+ A S G +F ENK+QE
Sbjct: 2 LKERIEEVYEKIEKAALRASRKKEDIKLLAVTKTVPEDVIKEAYSLGIRLFGENKVQEFL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ L K+ D++ FIG++Q+NKV + + +I +V R+ E+ K+ + +
Sbjct: 62 RKYEAL-KDLDIEWHFIGAIQTNKVKYLKNKVKLIHSVDRKAIVD----EISKRMEHIDI 116
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
I+VN G E KSG+ N K+ K +N++GLMCIPP + +P F L
Sbjct: 117 LIEVNVGQESSKSGVEENHLKELTEYVLSKPNINLKGLMCIPPYFEDTEKVRPFFAKLRN 176
Query: 180 IAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + KL +LSMGM+ DFELAI GAT +RIG+ +FG+R
Sbjct: 177 LKEDLEKTFNIKLPELSMGMSHDFELAIEEGATIIRIGTYLFGQR 221
>gi|326404445|ref|YP_004284527.1| hypothetical protein ACMV_22980 [Acidiphilium multivorum AIU301]
gi|325051307|dbj|BAJ81645.1| hypothetical protein ACMV_22980 [Acidiphilium multivorum AIU301]
Length = 229
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 113/193 (58%), Gaps = 1/193 (0%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSN 85
+V+L+AVSK I AL+ GQ++F EN++QEA K+ LR + L IG LQ+N
Sbjct: 33 AVTLIAVSKTKPVAAIEAALAAGQLVFGENRVQEAAAKFPLLRAAHPGLALHLIGPLQTN 92
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
K E V+LFD I+++ R K A L+ + + + +QVN G E QK+G+ P + F
Sbjct: 93 KAREAVALFDCIDSLDRPKLADALAAAAERAGQMPRLLVQVNVGDEPQKAGVSPAEADGF 152
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA 205
+ R ++ + GLM IPP +P PHF L +A L S+GM+ DFE AIA GA
Sbjct: 153 IRAMRARFGERLRGLMAIPPLGEDPAPHFGTLVAMADTHGLPVRSIGMSDDFETAIACGA 212
Query: 206 TSVRIGSGIFGER 218
T VR+GS +FG R
Sbjct: 213 TEVRVGSALFGAR 225
>gi|197119080|ref|YP_002139507.1| pyridoxal phosphate-dependent enzyme, class III [Geobacter
bemidjiensis Bem]
gi|197088440|gb|ACH39711.1| pyridoxal phosphate-dependent enzyme, class III [Geobacter
bemidjiensis Bem]
Length = 230
Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 124/231 (53%), Gaps = 17/231 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L +++I +A+ A R D+V LVAVSK + I A +CGQ IF EN +QE
Sbjct: 1 MSVAENLGKIRERIRQAALRAGREPDAVRLVAVSKTKPAAAIEEAFACGQQIFGENYVQE 60
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
KK +P W FIG+LQSNKV +I + D+I +V R A+ + + +
Sbjct: 61 LVGKKGELPPEISW----HFIGNLQSNKVRQIAGMVDLIHSVDRLSLAAEIDRQWGALGK 116
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
V IQVN E K G ++ V + L V GLM +PP +P +P+F
Sbjct: 117 VCEVLIQVNISQEETKGGTSSDELFQLVRDVAKLSNLRVVGLMTMPPFFDDPEGARPYFR 176
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E+AR+ + + +LSMGM+ DFE AI GAT VR+GS +FGER
Sbjct: 177 ELRELARKLEAAAIPGVSMLELSMGMSGDFEAAIEEGATLVRVGSALFGER 227
>gi|310820636|ref|YP_003952994.1| hypothetical protein STAUR_3375 [Stigmatella aurantiaca DW4/3-1]
gi|309393708|gb|ADO71167.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 221
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 116/219 (52%), Gaps = 5/219 (2%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L + ++ ++ RP +SV+L+AVSK+ IR A + GQ F EN QE +
Sbjct: 4 VAERLADIQARVASACARVGRPVESVTLIAVSKLKPGALIREAYAAGQRDFGENYAQELR 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IG LQ+NK + + + R + A LS ++ LP
Sbjct: 64 DKATELEDLAGLRWHAIGPLQTNKAKYVARVAQSFHALDRMEVARELSKRRLEAP--LPC 121
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
Y++VN G E KSG+ P FV R L +EGLM +PP +P + HF L E
Sbjct: 122 YVEVNLGGEQSKSGLTPEALGAFVDEARVLPGLRLEGLMALPPPTPDPEQARGHFRRLRE 181
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ARE L+ LSMG T DFE AI GAT VR+G+ IFGER
Sbjct: 182 LAREHGLSGLSMGTTHDFEQAIEEGATLVRVGTAIFGER 220
>gi|83648989|ref|YP_437424.1| TIM-barrel fold family protein [Hahella chejuensis KCTC 2396]
gi|83637032|gb|ABC32999.1| predicted enzyme with a TIM-barrel fold [Hahella chejuensis KCTC
2396]
Length = 227
Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 120/228 (52%), Gaps = 13/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
S+ + ++ Q+I+N+ A RP DSV+L+AVSK ++ IR A G F EN LQE
Sbjct: 2 FSIADNIKTVSQRIQNATKSAARPADSVTLLAVSKTKPAEAIRAAYDAGLRDFGENYLQE 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+ K L + FIG LQSNK + LF + T+ REK A LS + + + L
Sbjct: 62 AQDKIAQL-SNLAITWHFIGPLQSNKTRPVAELFQWVHTLDREKIARRLSEQRPEGTPPL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNP--------- 170
V IQVN E KSG+ P + + L + GLMCIP P+ G+
Sbjct: 121 NVCIQVNINDESSKSGVTPGEIAPLAEIVSALPGLRLRGLMCIPDPSQGDEALASTFKEL 180
Query: 171 KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
HF L +R + LSMGM+ D E AIA+G+T VRIGS IFG R
Sbjct: 181 NRHFAALQ--SRFDSVDTLSMGMSDDMEAAIAAGSTIVRIGSAIFGAR 226
>gi|297568540|ref|YP_003689884.1| alanine racemase domain protein [Desulfurivibrio alkaliphilus AHT2]
gi|296924455|gb|ADH85265.1| alanine racemase domain protein [Desulfurivibrio alkaliphilus AHT2]
Length = 250
Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 118/226 (52%), Gaps = 30/226 (13%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK------------ 70
R SV LVAVSK V++++I A++ GQ +F EN LQEA+ K + +
Sbjct: 24 RDPASVRLVAVSKRVEAERIVTAVAAGQRLFGENYLQEAQAKISRVNELLAGPEAGPEAS 83
Query: 71 -----EWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ +V FIG LQSNK + F ++ET+ R K A L R LPV +
Sbjct: 84 LDPTGKAEVSWHFIGHLQSNKAKAAATTDFTMVETIDRLKLARALDRHAAAAGRLLPVLV 143
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY----LL 177
QVN G E QK+G+MP Q + + + L V GLM +PP +P +PHF L
Sbjct: 144 QVNVGGEAQKAGVMPEQAPELLRSLAELPALRVMGLMTMPPMAAHPEESRPHFARLRQLA 203
Query: 178 SEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
E AR+ L LSMGM+ DFE+A+ GA VR+G+ IFG R
Sbjct: 204 EEFARQGLLGAHGSPLLSMGMSADFEVAVEEGANLVRVGTAIFGPR 249
>gi|148261046|ref|YP_001235173.1| alanine racemase domain-containing protein [Acidiphilium cryptum
JF-5]
gi|146402727|gb|ABQ31254.1| alanine racemase domain protein [Acidiphilium cryptum JF-5]
Length = 229
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/193 (41%), Positives = 112/193 (58%), Gaps = 1/193 (0%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSN 85
+V+L+AVSK I AL+ GQ++F EN++QEA K+ LR + L IG LQ+N
Sbjct: 33 AVTLIAVSKTKPVAAIEAALAAGQLVFGENRVQEAAAKFPLLRAAHPGLALHLIGPLQTN 92
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
K E V+LFD I+++ R K A L+ + R + +QVN G E QK+G+ + F
Sbjct: 93 KAREAVALFDCIDSLDRPKLADALAAAAERAGRMPRLLVQVNVGDEPQKAGVSLAEADGF 152
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA 205
+ R ++ + GLM IPP +P PHF L +A L S+GM+ DFE AIA GA
Sbjct: 153 IRAMRARFGERLRGLMAIPPLGEDPAPHFRTLVAMADTHGLPVRSIGMSDDFETAIACGA 212
Query: 206 TSVRIGSGIFGER 218
T VR+GS +FG R
Sbjct: 213 TEVRVGSALFGAR 225
>gi|221632825|ref|YP_002522047.1| hypothetical protein trd_0819 [Thermomicrobium roseum DSM 5159]
gi|221155434|gb|ACM04561.1| conserved hypothetical protein TIGR00044 [Thermomicrobium roseum
DSM 5159]
Length = 230
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 117/214 (54%), Gaps = 9/214 (4%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+IE +A A R SV +VAV+K +D +K++ A G +F EN++QEA++K+
Sbjct: 17 RIERAAERAGRDPQSVQIVAVTKGIDREKVQAAYELGLRLFGENRVQEAQRKFGENPLPP 76
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
D +L IG LQ+NKV V LF +I +V R L + R LP+ IQVN E
Sbjct: 77 DAELHLIGYLQTNKVRHAVKLFALIHSVDRAALIEELHERAARVGRRLPILIQVNIAGEE 136
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK---- 185
QK G P + + + L K L+V GLM I P + +P F L E+ + +
Sbjct: 137 QKHGCRPAEAAELLALGLTKPHLDVRGLMTIAPLVAESELVRPVFRALRELRDQLQERFQ 196
Query: 186 --LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
L +LSMGM+ DF++A+ GAT VRIG +FG+
Sbjct: 197 HPLPELSMGMSNDFDIAVEEGATLVRIGRALFGD 230
>gi|206890646|ref|YP_002249591.1| hypothetical protein THEYE_A1800 [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206742584|gb|ACI21641.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 236
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 128/231 (55%), Gaps = 15/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++ +KI +A+ R + + L+AV+K KI+ A G IF EN++QEAK
Sbjct: 2 LSERISSVVKKITYAALRTGRNPEEIKLIAVTKSQPIDKIKEASQLGLRIFGENRVQEAK 61
Query: 63 KKWIPLRK---EW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K L++ +W ++ IG LQSNKV E V LF++I ++ EK A L++ E K
Sbjct: 62 IKIEALKEFIAQWKMSIEWHMIGHLQSNKVKEAVRLFEIIHSMDSEKLAILINKEAEKVG 121
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
+ V IQV E K G+ ++ ++ + C L VEGLM IPP NP +P+F
Sbjct: 122 KIQRVLIQVKLSQEESKYGVNIDKIEELMEFCTNLPNLKVEGLMTIPPYFENPEDSRPYF 181
Query: 175 YLLSEIAR------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +I C L +LSMGM+ DFE+AI GAT VRIG+ +FG+RP
Sbjct: 182 KNLRQIKEILSQKGYC-LKELSMGMSNDFEVAIEEGATMVRIGTALFGQRP 231
>gi|242239592|ref|YP_002987773.1| alanine racemase domain protein [Dickeya dadantii Ech703]
gi|242131649|gb|ACS85951.1| alanine racemase domain protein [Dickeya dadantii Ech703]
Length = 219
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 109/190 (57%), Gaps = 1/190 (0%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVS 88
L+ VSK KI+ + G F E+++ EA KW LR ++ D++L FIG LQS KV+
Sbjct: 29 LLVVSKFHTMDKIQPLIHAGHRCFGESRVDEAINKWDALRNQYEDLELHFIGGLQSRKVA 88
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
+IV FDVI++V R A +S + ++IQ+N G E QKSG+ N D
Sbjct: 89 KIVEFFDVIQSVDRASLADKISSCAKSLGKTQKIFIQINIGDEPQKSGVSVNDFDDVFAH 148
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSV 208
+ + +EG+MCIPP + +F +S I + +LSMGM+ D++LA+ +T V
Sbjct: 149 VSRLDNICIEGVMCIPPNEKDVSVYFSQMSAITEKYHFPQLSMGMSNDYKLALCYNSTMV 208
Query: 209 RIGSGIFGER 218
R+GS IFGER
Sbjct: 209 RVGSAIFGER 218
>gi|254456661|ref|ZP_05070090.1| conserved hypothetical protein TIGR00044 [Candidatus Pelagibacter
sp. HTCC7211]
gi|207083663|gb|EDZ61089.1| conserved hypothetical protein TIGR00044 [Candidatus Pelagibacter
sp. HTCC7211]
Length = 182
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 105/171 (61%), Gaps = 1/171 (0%)
Query: 49 GQVIFAENKLQEAKKKWIPLRKEWDVQL-RFIGSLQSNKVSEIVSLFDVIETVSREKTAS 107
G + F ENK+QEA KW ++K IG LQ+NKV +V LFD I ++ K A
Sbjct: 11 GHLHFGENKVQEAVDKWSDIKKLKKSLKLHMIGKLQTNKVKYVVPLFDYIHSLDNIKLAE 70
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM 167
++ E IK+++ L ++IQVN G E QKSGI + K+F C ++ LN+ GLMC+PP
Sbjct: 71 KIASEQIKKNKNLKIFIQVNIGNESQKSGINITELKNFYEKCTRELNLNIIGLMCLPPQH 130
Query: 168 GNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
G+ K +F + E+ + + LSMGM+ D+ A+ GAT +RIGS IFG+R
Sbjct: 131 GSVKNYFNEMVELKKILNVEDLSMGMSEDYLEAVGCGATYIRIGSKIFGDR 181
>gi|258593029|emb|CBE69340.1| putative enzyme [NC10 bacterium 'Dutch sediment']
Length = 237
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 122/225 (54%), Gaps = 11/225 (4%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++++ +Q++ +A R D ++LVAV+K V +IR A+ G ++ EN++QEA K
Sbjct: 12 DRIEQVRQRMAEAAHRVGRDPDEIALVAVTKTVPIPRIREAIDVGVMLLGENRVQEASDK 71
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ L V IG LQ+NK LF +I ++ K A L ++ + V +
Sbjct: 72 -MALLSSLPVTWHLIGHLQTNKSRSAAELFGLIHSLDSVKLAVALDRHGAALAKQIRVLV 130
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF----YLL 177
+VN G E K+G++ + + CRQ L +EGLM +PP NP +P F L
Sbjct: 131 EVNLGGEPSKTGVLEHDLVPLLESCRQFTHLVIEGLMAVPPFRRNPEDVRPFFRRLRLLR 190
Query: 178 SEIAR---ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E AR +C L LSMGM+ D+E+AI GAT VRIG+ IF ERP
Sbjct: 191 DEAARACPDCPLRHLSMGMSHDYEIAIEEGATLVRIGTAIFDERP 235
>gi|86158925|ref|YP_465710.1| hypothetical protein Adeh_2503 [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775436|gb|ABC82273.1| protein of unknown function UPF0001 [Anaeromyxobacter dehalogenans
2CP-C]
Length = 227
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 109/203 (53%), Gaps = 1/203 (0%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL 76
+AI A+ P V+LVAVSK + IR A + GQ F EN QE + K L ++
Sbjct: 12 AAIRAELPA-GVTLVAVSKTQPPEAIREAYAAGQRDFGENYAQEWRAKADALADLPGLRW 70
Query: 77 RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG 136
FIG LQ+NK + ++ V RE+ A+ LS ++ V ++VN G E K G
Sbjct: 71 HFIGGLQTNKAKYLAGRVALVHAVDREELAAELSRRFGQKGATARVLLEVNVGGEASKEG 130
Query: 137 IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRD 196
P++ + R + + GLMCIPP +P+PHF L + L +LSMGM+ D
Sbjct: 131 CPPDRVEALAAAVRALPSVELAGLMCIPPPADDPRPHFRALRALRDRLGLRELSMGMSAD 190
Query: 197 FELAIASGATSVRIGSGIFGERP 219
+ +A+ GAT VR+GS IFG RP
Sbjct: 191 WRIAVEEGATLVRVGSAIFGARP 213
>gi|299139440|ref|ZP_07032615.1| alanine racemase domain protein [Acidobacterium sp. MP5ACTX8]
gi|298598709|gb|EFI54872.1| alanine racemase domain protein [Acidobacterium sp. MP5ACTX8]
Length = 229
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 127/226 (56%), Gaps = 8/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++ + ++ ++ A R + V+L+AVSKM ++ I A + GQ +F EN++QE
Sbjct: 1 MSIASNIERLRNEVADACARANRRAEDVALMAVSKMHPAEAILEAHAAGQRLFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+ K + + + L IG LQ+NK ++ +F I+ V KTA L+ + L
Sbjct: 61 AQAKSAQIAQLEGLDLHLIGPLQNNKTAKAAEIFHAIDAVDSLKTAERLNSAAQALGKTL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
P+ I+V +E K G+ P + F+ + L +GLM +PP +P +P+F L
Sbjct: 121 PLLIEVKLSHEETKHGLAPEELPAFLDGLQPFSFLKPQGLMTVPPWSDDPETARPYFQHL 180
Query: 178 -----SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A+ LT+LSMGM+ DF +AI G+T+VRIG+ IFG+R
Sbjct: 181 RRLRDENVAQHPNLTQLSMGMSHDFRVAIEEGSTTVRIGTAIFGKR 226
>gi|85858964|ref|YP_461166.1| alanine racemase domain-containing protein [Syntrophus
aciditrophicus SB]
gi|85722055|gb|ABC76998.1| alanine racemase, N-terminal domain protein [Syntrophus
aciditrophicus SB]
Length = 232
Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 122/230 (53%), Gaps = 17/230 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N + +++I +A A R + L+AV+K V +I AL G + EN +QE
Sbjct: 5 AIRNNIAEIRERIAGAATRAGRQVSEIRLMAVTKKVQESRIGQALEAGIDLCGENYIQEG 64
Query: 62 KKK--WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K I +W IG LQ+NK V LFD++++V R + A L R
Sbjct: 65 KTKIEAIGHPPQW----HMIGHLQTNKAKYAVRLFDMVQSVDRLELAIELERRARAAGRV 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
LPV I+VN+G E+ KSG+ P + + + + +EGLM +PP NP +P+F
Sbjct: 121 LPVLIEVNSGGELTKSGVAPEEAESLIRSIALLENIAIEGLMTMPPWFENPETARPYFAA 180
Query: 177 L----SEIARE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L IA E L +LSMGMT D+E+AI GAT VRIG GIFGER
Sbjct: 181 LRTLRDRIAAERIDRVSLRELSMGMTDDYEVAIEEGATIVRIGRGIFGER 230
>gi|220916555|ref|YP_002491859.1| alanine racemase domain protein [Anaeromyxobacter dehalogenans
2CP-1]
gi|219954409|gb|ACL64793.1| alanine racemase domain protein [Anaeromyxobacter dehalogenans
2CP-1]
Length = 223
Score = 135 bits (340), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 108/203 (53%), Gaps = 1/203 (0%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL 76
+AI A P V+LVAVSK + IR A + GQ F EN QE + K L ++
Sbjct: 8 AAIRADLPA-GVTLVAVSKTQPPEAIREAYAAGQRDFGENYAQEWRAKADALADLPGLRW 66
Query: 77 RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG 136
FIG LQ+NK + ++ V RE+ A+ LS ++ V ++VN G E K G
Sbjct: 67 HFIGGLQTNKAKYLAGRVALVHAVDREELAAELSRRFGQKGATARVLLEVNVGGEASKEG 126
Query: 137 IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRD 196
P++ + R + + GLMCIPP +P+PHF L + L +LSMGM+ D
Sbjct: 127 CPPDRVEALAAAVRALPSIELAGLMCIPPPEDDPRPHFRALRALRDRLGLRELSMGMSAD 186
Query: 197 FELAIASGATSVRIGSGIFGERP 219
+ +A+ GAT VR+GS IFG RP
Sbjct: 187 WRIAVEEGATLVRVGSAIFGARP 209
>gi|325294730|ref|YP_004281244.1| hypothetical protein Dester_0534 [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065178|gb|ADY73185.1| protein of unknown function UPF0001 [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 228
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 126/227 (55%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ K++IE + AKR D V ++A SK ++IR A G +F EN++QE
Sbjct: 1 MGIRENVKRIKERIEKACERAKRNPDEVFILAASKTRAPEEIRKAFEAGIKLFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++K IPL + ++ IG LQ NKV V+LF VIE+V ++ A L + K + L
Sbjct: 61 AREK-IPLLSDIPIEWHMIGHLQKNKVKYAVNLFKVIESVDSKELADELEKRLSKIGKKL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
V+I+V E K G PN+ ++ + L+++GLM +PP + +P+F L
Sbjct: 120 EVFIEVKLSPEETKHGCSPNEVEELARYVLELKHLDLKGLMTVPPYFEDVELVRPYFRRL 179
Query: 178 SEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+I K+ LSMGM+ DFE+A+ GAT VRIG+ IFG R
Sbjct: 180 RKIRDRLEDSLGMKIPHLSMGMSHDFEVAVEEGATIVRIGTAIFGPR 226
>gi|308271245|emb|CBX27854.1| UPF0001 protein aq_274 [uncultured Desulfobacterium sp.]
Length = 231
Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 121/224 (54%), Gaps = 16/224 (7%)
Query: 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69
K ++ SA+ R +S+ ++AV+K V ++KIR+A+ G I EN +Q+A++K+ PL
Sbjct: 8 IKNRVIRSALSCGRDPESIRIIAVTKTVTAEKIRMAIESGIQIIGENYIQDAREKY-PLL 66
Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
+V FIG LQ+NK V +FD+I TV + A L + K ++ + IQVN G
Sbjct: 67 SSNEVPWHFIGHLQTNKAKYAVKMFDLIHTVDSYRLAVELDAQAKKINKVQQILIQVNIG 126
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS-------- 178
E KSGI D + L V+GLM IPP +P +P+F L
Sbjct: 127 KEKSKSGITQETAFDLIKKIGGLNNLRVKGLMVIPPFYDDPERTRPYFAALRILRDRINS 186
Query: 179 ----EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E + ++ +LSMGM+ DFE I GAT VRIG+ IFGER
Sbjct: 187 LLEPEDIQNIRMEELSMGMSGDFETGIEEGATLVRIGTAIFGER 230
>gi|158521192|ref|YP_001529062.1| alanine racemase domain-containing protein [Desulfococcus
oleovorans Hxd3]
gi|158510018|gb|ABW66985.1| alanine racemase domain protein [Desulfococcus oleovorans Hxd3]
Length = 227
Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 88/225 (39%), Positives = 118/225 (52%), Gaps = 12/225 (5%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+KL+ +++I+ + R +V LVAVSK +I A++ G EN +QEAK+K
Sbjct: 3 DKLEQIRERIQAATEACGRDPATVRLVAVSKTQPVSRIAEAIAAGATDLGENYIQEAKEK 62
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
L V FIG LQSNK VSLFD I TV K A+ + K + + I
Sbjct: 63 IESLAGH-SVCWHFIGHLQSNKAKIAVSLFDWIHTVDSVKLAAEIDKHAAKLGKVQKILI 121
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF----YLL 177
QVNTG E KSG+ P V + + V+GLM IPP +P +PHF L
Sbjct: 122 QVNTGQERSKSGVAPEDMAGLVTEISRFAHVTVQGLMAIPPFYADPEAVRPHFKKLRMLR 181
Query: 178 SEIARE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I ++ + +LSMGM+ DF+ AIA GAT VRIG+ IFG R
Sbjct: 182 DAIEKQQIPNVVMEELSMGMSGDFDAAIAEGATMVRIGTAIFGAR 226
>gi|153004231|ref|YP_001378556.1| alanine racemase domain-containing protein [Anaeromyxobacter sp.
Fw109-5]
gi|152027804|gb|ABS25572.1| alanine racemase domain protein [Anaeromyxobacter sp. Fw109-5]
Length = 213
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 104/192 (54%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V+LVAVSK + IR A GQ F EN QE ++K L +++ FIG+LQ+NK
Sbjct: 17 GVTLVAVSKTQPAAAIREAYEAGQRDFGENYAQEWREKADALADLPELRWHFIGALQTNK 76
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V + + TV RE+ A LS ++ V+++VNTG E K+G P +
Sbjct: 77 VKYLAGRVAYVHTVDREELARELSRRFAQKGAVARVFVEVNTGGEASKAGCAPGEVPALA 136
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT 206
R L + G+M IPP +P+PHF L + + +LSMGM+ D+ +A+ GAT
Sbjct: 137 AAIRDLPSLELVGVMGIPPPEDDPRPHFRALRALRDALGVRELSMGMSGDWRVAVEEGAT 196
Query: 207 SVRIGSGIFGER 218
VRIGS IFG R
Sbjct: 197 FVRIGSAIFGAR 208
>gi|117926931|ref|YP_867548.1| alanine racemase domain-containing protein [Magnetococcus sp. MC-1]
gi|117610687|gb|ABK46142.1| alanine racemase domain protein [Magnetococcus sp. MC-1]
Length = 235
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 125/230 (54%), Gaps = 13/230 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L+ ++ + + A R V L+AVSK S + A+ GQ++F EN++QEA
Sbjct: 3 TITQRLETIQEHMVQACQRAGRSPHEVQLMAVSKRQSSSAVSEAIEAGQLLFGENRVQEA 62
Query: 62 KKKWIPLRKEWDVQLRF--IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K+K + VQ ++ IG LQ NK+ I LF +++TV A + M + R
Sbjct: 63 KEKQPTVSMPAGVQPQWHMIGPLQKNKIKYIGELFHMVQTVDTLTLAQAIGARMQAEQRQ 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+P+ +QVN G E QK+G+ ++ V Q + ++GLM +PP + +P +P+F
Sbjct: 123 MPILLQVNVGGEAQKNGMTAEALEEQVRHIAQIPGVRIQGLMTVPPYLEDPQQVRPYFRA 182
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +A + + LSMGM+ DF +AI GAT VR+GS +FGER
Sbjct: 183 LYTLANHVQQMRLPGVAMETLSMGMSHDFHVAIEEGATMVRVGSALFGER 232
>gi|108761718|ref|YP_630860.1| hypothetical protein MXAN_2641 [Myxococcus xanthus DK 1622]
gi|108465598|gb|ABF90783.1| conserved hypothetical protein TIGR00044 [Myxococcus xanthus DK
1622]
Length = 227
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 118/224 (52%), Gaps = 4/224 (1%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ +L ++++ + A RP +SV+LVAVSK+ + IR A + GQ F EN QE
Sbjct: 4 SVAERLASVRERVVAACARAGRPVESVTLVAVSKLKPADLIREAYAAGQRDFGENYAQEL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L ++ IG+LQ+NKV + + R + A LS + + + LP
Sbjct: 64 RDKAAELADLEGLRWHSIGALQTNKVKYVARAAGAFHALDRLEVARELS-KRREGAPPLP 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLS 178
VY++VN G E KSG+ P+ F+ R L GLM +PP + F L
Sbjct: 123 VYVEVNVGGEATKSGLAPDALGAFLDEVRALPGLQAVGLMALPPPTEDEARARADFQALR 182
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
E+AR L LSMG T DFE AI GAT VR+G+ IFGER ++
Sbjct: 183 ELARVHGLPGLSMGTTHDFEWAIEEGATVVRVGTAIFGERALKS 226
>gi|294338787|emb|CAZ87121.1| putative Alanine racemase, yggS [Thiomonas sp. 3As]
Length = 243
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/228 (39%), Positives = 116/228 (50%), Gaps = 10/228 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L +Q+I +A A R SV+L+AVSK ++ I A + GQ F EN +QEA
Sbjct: 11 LAHPLSAVRQRIAQAAAAAGRDPHSVTLLAVSKTFPAEDIARAAALGQTAFGENYVQEAV 70
Query: 63 KKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K LR +W +Q FIG LQSNK ++ FD + ++ R K A LS + + L
Sbjct: 71 DKIAALRPDWPALQWHFIGPLQSNKTRDVAEHFDWVHSIDRLKLAQRLSDQRPAELDPLQ 130
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMG-----NPKPHFY 175
V IQVN E KSG+ P L + GLMCIP P G P
Sbjct: 131 VCIQVNVDSETTKSGVRPEDASALAAAVAALPNLRLRGLMCIPAPREGLDAQRAPFARLR 190
Query: 176 LLSE-IARECKLT--KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + IA E LT LSMGM+ D E A+ GAT VR+GS IFG RP
Sbjct: 191 ALRDAIAAEHGLTLDTLSMGMSADLEAAVLEGATIVRVGSAIFGARPA 238
>gi|118472564|ref|YP_886394.1| hypothetical protein MSMEG_2032 [Mycobacterium smegmatis str. MC2
155]
gi|118173851|gb|ABK74747.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
155]
Length = 252
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 116/223 (52%), Gaps = 10/223 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
LQ +I + A R V L+ VSK VD ++RVA + G +F ENK+QEA +KW
Sbjct: 21 NLQAVNTRIGAALQRAGREPGEVRLLPVSKTVDEDRLRVAAAAGCTMFGENKVQEAMRKW 80
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L + DV+ IG LQ+NK ++ + + + A+ L + R L VY+Q
Sbjct: 81 RNL-SDLDVEWSVIGHLQTNKAKDVAEFAAEFQALDNPRAAAALDRRLQALGRQLDVYVQ 139
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI-- 180
VNT E K G+ P+ F+ L V GLM I +P +P F LL +
Sbjct: 140 VNTSGEESKYGLAPDDVIPFLKTLPAYTALRVRGLMTIAVFSTDPERVRPCFRLLRSLRD 199
Query: 181 -ARECKL---TKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
AR+ L +LSMGM+ D+ELAIA G+T VR+G IFG RP
Sbjct: 200 QARDLDLIGPGELSMGMSGDYELAIAEGSTCVRVGQAIFGARP 242
>gi|319790041|ref|YP_004151674.1| alanine racemase domain protein [Thermovibrio ammonificans HB-1]
gi|317114543|gb|ADU97033.1| alanine racemase domain protein [Thermovibrio ammonificans HB-1]
Length = 228
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 120/223 (53%), Gaps = 11/223 (4%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N +V KQ IE +A+ A R + V L+A SK ++I+ A G +F EN++QEA++K
Sbjct: 6 NVEKVLKQ-IEEAALRAGRRPEEVKLLAASKTRTPQEIKEAYEAGVKLFGENRVQEAREK 64
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
IP + Q IG LQ+NKV V LFD IE+V RE L + ++ + +PV I
Sbjct: 65 -IPQLADLKAQWHMIGHLQTNKVKYAVKLFDCIESVDREGLVEELQKRLSREGKVMPVLI 123
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA 181
+V E K G +P + L ++GLM +PP +P +P+F L +
Sbjct: 124 EVKLSPEESKHGCLPQELPRLTEKVLNSPNLKLKGLMTVPPYFEDPEKVRPYFAELRRLR 183
Query: 182 RE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E +L +LSMGM+ DF +A+ GAT VR+G+ IFG R
Sbjct: 184 DELQEKFKVELPELSMGMSHDFPVAVEEGATIVRVGTAIFGPR 226
>gi|328953088|ref|YP_004370422.1| protein of unknown function UPF0001 [Desulfobacca acetoxidans DSM
11109]
gi|328453412|gb|AEB09241.1| protein of unknown function UPF0001 [Desulfobacca acetoxidans DSM
11109]
Length = 243
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 112/209 (53%), Gaps = 15/209 (7%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R + LV SK VD +IR A++ G I EN LQEA++K L + V FIG L
Sbjct: 37 REPAEIRLVGASKTVDLARIREAVAAGLAILGENYLQEARQKIAVL--DAPVSWHFIGHL 94
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
QSNK + V LFD+I +V R A L+ ++ V ++VN E KSGI +
Sbjct: 95 QSNKANAAVRLFDLIHSVDRLSLAQALNRAAANINKVQDVLLEVNLAGEASKSGISSTEL 154
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE---------CKLTKLS 190
D + +C L V GLM +PP +P +P+F L I R+ +L +LS
Sbjct: 155 PDLIRVCHGLSHLRVRGLMAMPPWFADPEQARPYFKKL-RILRDQVQSQGQPGLELVELS 213
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERP 219
MGM+ D+E+AI GAT VRIG+ +FG RP
Sbjct: 214 MGMSGDYEVAIEEGATLVRIGTALFGSRP 242
>gi|296134835|ref|YP_003642077.1| alanine racemase domain protein [Thiomonas intermedia K12]
gi|295794957|gb|ADG29747.1| alanine racemase domain protein [Thiomonas intermedia K12]
Length = 243
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 116/228 (50%), Gaps = 10/228 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L +Q+I +A A R SV+L+AVSK ++ + + GQ F EN +QEA
Sbjct: 11 LAHPLSAVRQRIAQAAAAAGRDPRSVTLLAVSKTFPAQDVAQLAALGQTAFGENYVQEAV 70
Query: 63 KKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K LR +W +Q FIG LQSNK ++ FD + ++ R K A LS + + L
Sbjct: 71 DKIAALRPDWPALQWHFIGPLQSNKTRDVAEHFDWVHSIDRLKLAQRLSDQRPAELEPLQ 130
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V IQVN E KSG+ P +L + GLMCIP + + F L
Sbjct: 131 VCIQVNVDGETTKSGVRPEDASALAAAVAALPRLRLRGLMCIPEPRADAAAQRAPFARLR 190
Query: 179 E----IARECKLT--KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E IA E LT LSMGM+ D E AI GAT VR+GS IFG RP
Sbjct: 191 ELRDAIAAEHGLTLDTLSMGMSADLEAAILEGATIVRVGSAIFGARPA 238
>gi|94971230|ref|YP_593278.1| hypothetical protein Acid345_4204 [Candidatus Koribacter versatilis
Ellin345]
gi|94553280|gb|ABF43204.1| Protein of unknown function UPF0001 [Candidatus Koribacter
versatilis Ellin345]
Length = 231
Score = 132 bits (331), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 120/230 (52%), Gaps = 10/230 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + +++IE +A A R ++L+AV K + IR A + GQ +F EN++QE
Sbjct: 1 MSIAENISGIRRRIETAAKHAARNPVEIALMAVCKTKPADAIREAYAAGQRLFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L D + IG LQSNK LF +++V K A L+ + L
Sbjct: 61 FATKAPLLSGLSDARFHMIGHLQSNKSKAAAELFSAVDSVDSLKLAERLNAAARDLGKTL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVEGLMCIPPAMGNP---KPHFY 175
+ I++N G E KSG+ P + IL K L + GLM +PP +P +P+F
Sbjct: 121 DILIEINVGGEEAKSGMPPESPEVLQILEHAKEWQNLRMRGLMTVPPFTEDPEGARPYFR 180
Query: 176 LLSEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E+ + L +LSMGM+ DFE+AI G+T VR+G+ IFGERP
Sbjct: 181 TVRELRDSMALKGFALDQLSMGMSHDFEIAIEEGSTCVRVGTAIFGERPT 230
>gi|94265278|ref|ZP_01289036.1| Protein of unknown function UPF0001 [delta proteobacterium MLMS-1]
gi|93454212|gb|EAT04530.1| Protein of unknown function UPF0001 [delta proteobacterium MLMS-1]
Length = 232
Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 113/208 (54%), Gaps = 12/208 (5%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R +V LVAVSK V ++I A++ GQ +F E+ LQEA+ K + E + FIG L
Sbjct: 24 RDPQTVRLVAVSKKVAPERIARAVAGGQRLFGESYLQEAEAKMARVDPEGRLHWHFIGHL 83
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
QSNK + F ++E+V R K A L+ R LPV +QVN E +K+G+ P +T
Sbjct: 84 QSNKAKAAATRFAMVESVDRLKLADRLAHHAAAAGRLLPVLVQVNIAGEARKAGVAPAET 143
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA---RECKL------TKLS 190
+ + + L V GLM +PP + HF L ++A E L +LS
Sbjct: 144 RALLQELDKLPALRVMGLMTMPPWASTAEASRGHFRQLRQLADAMAEAGLLGRHGPVELS 203
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGM+ DFE+A+ GAT VR+G+ IFG R
Sbjct: 204 MGMSGDFEVAVEEGATLVRVGTAIFGAR 231
>gi|91203601|emb|CAJ71254.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 243
Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 124/229 (54%), Gaps = 12/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ KQ I N+AI A + + ++LV +K VD +IR A+ G I ENK+QE
Sbjct: 1 MSIKENLENVKQNIANAAIKAGKKPEDITLVMATKTVDVDRIREAIKAGGNIIGENKIQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A KK+ L+ E V+ FIG LQ+NKV + + +I +V R A L ++++ R L
Sbjct: 61 ALKKYQELKDE-KVEWHFIGHLQTNKVKDALKFAHMIHSVDRLPLAEKLDHRLMQEVRSL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+ +QVNT +E K GI P + + + LN+ GLM I + + F +L
Sbjct: 120 DILVQVNTSHEESKYGIEPEKAISLIKQIAKYDTLNIRGLMTIGLFTKDEVKIRKCFKVL 179
Query: 178 SE----IARE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IA E ++ LSMGMT D+++AI GA VRIG+ IFG R
Sbjct: 180 KALCDIIATEGIDRVQMDYLSMGMTNDYQIAIEEGANMVRIGTAIFGAR 228
>gi|218778253|ref|YP_002429571.1| alanine racemase domain protein [Desulfatibacillum alkenivorans
AK-01]
gi|218759637|gb|ACL02103.1| alanine racemase domain protein [Desulfatibacillum alkenivorans
AK-01]
Length = 233
Score = 132 bits (331), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 119/228 (52%), Gaps = 12/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ +++I+ +A R S+ LVAVSK ++ +R A + G IF EN +QEA
Sbjct: 4 TISKNLQEIQERIQKAAEECGRDPQSIRLVAVSKTKPAEMLRQAAAAGATIFGENYIQEA 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K L + DV+ FIG LQSNK V LF +I +V K A + + K +
Sbjct: 64 REKIAEL-ESLDVEWHFIGHLQSNKAKYAVPLFSLIHSVDSFKLAGEIDKQAAKAGKIQD 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+ +QVN E KSG + V + V+GLM +PP +P +P F L
Sbjct: 123 ILVQVNISGEETKSGTADEEAATLVKEISALENVRVKGLMTMPPFFDDPDRARPFFRRLR 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A + + +LSMGMT DFE AI GAT VR+G+ IFG R
Sbjct: 183 ELAQAIQNKGFKNVSMEELSMGMTGDFEAAIEEGATLVRVGTAIFGAR 230
>gi|163749435|ref|ZP_02156683.1| hypothetical protein KT99_04189 [Shewanella benthica KT99]
gi|161330844|gb|EDQ01771.1| hypothetical protein KT99_04189 [Shewanella benthica KT99]
Length = 242
Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 119/226 (52%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +IE +A ++ R D + L+AVSK + I A + GQ F EN +QE
Sbjct: 14 TIADRLANAQHRIEQAAQISSRNADEIQLLAVSKTKPNADILAAYAAGQRRFGENYVQEG 73
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L+ +++ FIG LQSNK I S FD + TVSREK AS L+ + K L
Sbjct: 74 ESKVNALKDSCPEIEWHFIGPLQSNKTKIIASHFDWMHTVSREKIASRLNDQRPKDLCPL 133
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+ IQ+N E KSG P + K Q L + GLM IP A + + F L
Sbjct: 134 NICIQINISSETSKSGTTPEELKSLASKIDQMPNLTLRGLMAIPTATSDKELQRDEFQQL 193
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +E K + LSMGM+ D E AI G+T VRIGS IFG R
Sbjct: 194 QALYQELKSLYPQVDTLSMGMSNDLEQAIEQGSTMVRIGSAIFGAR 239
>gi|94268049|ref|ZP_01291070.1| Protein of unknown function UPF0001 [delta proteobacterium MLMS-1]
gi|93451754|gb|EAT02518.1| Protein of unknown function UPF0001 [delta proteobacterium MLMS-1]
Length = 232
Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 113/208 (54%), Gaps = 12/208 (5%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R +V LVAVSK V ++I A++ GQ +F E+ LQEA+ K + E + FIG L
Sbjct: 24 RDPQTVRLVAVSKKVAPERIARAVAGGQRLFGESYLQEAEAKMARVDPEGRLHWHFIGHL 83
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
QSNK + F ++E+V R K A L+ R LPV +QVN E +K+G+ P +T
Sbjct: 84 QSNKAKAAATHFAMVESVDRLKLAGRLAHYAAAAGRLLPVLVQVNIAGEARKAGVAPAET 143
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA---RECKL------TKLS 190
+ + + L V GLM +PP + HF L ++A E L +LS
Sbjct: 144 RTLLQELDKLPALRVMGLMTMPPWASTAEASRGHFRQLRQLADAMAEAGLLGRHGPVELS 203
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGM+ DFE+A+ GAT VR+G+ IFG R
Sbjct: 204 MGMSGDFEVAVEEGATLVRVGTAIFGAR 231
>gi|118581657|ref|YP_902907.1| alanine racemase domain-containing protein [Pelobacter propionicus
DSM 2379]
gi|118504367|gb|ABL00850.1| alanine racemase domain protein [Pelobacter propionicus DSM 2379]
Length = 228
Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 120/229 (52%), Gaps = 13/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +L +++I +A+ A R + V LVAVSK + + A GQ+IF EN +QE
Sbjct: 1 MSIAERLAEVREEIRTAALAAGRDPEGVRLVAVSKTRPAADVIDAFRAGQIIFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K ++K V+ FIG LQSNKV +I L +I +V R A +S + + S
Sbjct: 61 LRAKAPEVKK--SVEWHFIGHLQSNKVRQIAGLVSMIHSVDRLSLAEEISRQWGRLSLSC 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+ +QVN EI KSG V L + GLM +PP +P +P F L
Sbjct: 119 DILVQVNISGEITKSGTTAENALQLVRDIAVLPNLRIRGLMTMPPFFDDPEAARPFFAGL 178
Query: 178 SEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A ++ +LSMGM+ DFE AI GAT VR+G+ IFGER
Sbjct: 179 RQLAELIDSEDIPGVEMKELSMGMSGDFEAAIGEGATLVRVGTAIFGER 227
>gi|222054661|ref|YP_002537023.1| alanine racemase domain protein [Geobacter sp. FRC-32]
gi|221563950|gb|ACM19922.1| alanine racemase domain protein [Geobacter sp. FRC-32]
Length = 230
Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 123/229 (53%), Gaps = 13/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L +++IE +A+ A R SV LV VSKM + A GQ +F EN +QE
Sbjct: 1 MSIADNLGQIEKRIEKAAVKAGREPASVRLVVVSKMQQPSAVDDAARAGQRLFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + ++ V FIGSLQSNKV +I L ++I +V R A + + K R
Sbjct: 61 LVSKVSQVGEQ--VTWHFIGSLQSNKVRQIAGLVEMIHSVDRLSLAREIDRQWQKLGRIC 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V +QVN E KSG + + V + ++GLM +PP +P +P+F L
Sbjct: 119 NVLVQVNVAGEATKSGSSAGELLELVRNISLLPNVRIKGLMTMPPFFDDPEGARPYFREL 178
Query: 178 SEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+++R ++ +LSMGM+ DFE+AI GAT VR+GS IFGER
Sbjct: 179 RDLSRMIADEPIANVEMNELSMGMSGDFEVAIEEGATLVRVGSAIFGER 227
>gi|292493756|ref|YP_003529195.1| alanine racemase domain protein [Nitrosococcus halophilus Nc4]
gi|291582351|gb|ADE16808.1| alanine racemase domain protein [Nitrosococcus halophilus Nc4]
Length = 231
Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 112/205 (54%), Gaps = 9/205 (4%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
RP SV+LVA +K IR A++CGQ F EN LQEA K L E +++ FIG +
Sbjct: 24 RPAGSVTLVAATKTCSVSAIRAAIACGQRAFGENYLQEALPKIKELESE-NLEWHFIGPI 82
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
QSNK +I + FD + +V R K A L+ + + L V +QVN E KSG P +
Sbjct: 83 QSNKTRDIAAHFDWVHSVDRLKVAQRLNQQRPPELPPLNVCLQVNISGEDSKSGTTPEEL 142
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIARE-----CKLTKLSMGMT 194
+ + +L++ GLM +PP + + F L ++ +E KL LS+GMT
Sbjct: 143 TELAKAVAEMPRLSLRGLMTLPPLNSDFEAQRQPFRALHQLWQELRQGGLKLDTLSIGMT 202
Query: 195 RDFELAIASGATSVRIGSGIFGERP 219
D E AIA GAT VR+G+ IFG RP
Sbjct: 203 DDLEAAIAEGATLVRVGAAIFGRRP 227
>gi|116751046|ref|YP_847733.1| alanine racemase domain-containing protein [Syntrophobacter
fumaroxidans MPOB]
gi|116700110|gb|ABK19298.1| alanine racemase domain protein [Syntrophobacter fumaroxidans MPOB]
Length = 234
Score = 130 bits (328), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 123/230 (53%), Gaps = 12/230 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L+ ++++ + A R +V LVAV+K V + +IR + G + EN +QEA
Sbjct: 3 TVAENLERIQERMNAACSRAGRDPAAVRLVAVTKTVPTDRIREGVEAGLTLLGENYIQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K I ++ V FIG LQSNK D + TV R + A L + K++R +P
Sbjct: 63 RRK-IEALEDLAVSWHFIGHLQSNKARVAAEYCDWVHTVDRLRLAVELDRQARKRNRVIP 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V +QVN G E +SG+ P+ L+V GLM +PP N +P F LL
Sbjct: 122 VLLQVNVGDEQSRSGVSPDDLPKLFEAVAALSGLSVRGLMTLPPYFENAQEVRPFFRLLR 181
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ R +LT+LSMGM+ DFE+A+ GAT VRIG+ +FG RP
Sbjct: 182 ELLERLRGIAPRPGELTELSMGMSNDFEVAVEEGATLVRIGTALFGGRPA 231
>gi|153001553|ref|YP_001367234.1| alanine racemase domain-containing protein [Shewanella baltica
OS185]
gi|151366171|gb|ABS09171.1| alanine racemase domain protein [Shewanella baltica OS185]
Length = 232
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 124/226 (54%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +++I +A R S+SL+AVSK + I A GQ F EN +QE
Sbjct: 3 TIADRLAIAQRRIAQAAQKCARQPSSISLLAVSKTKPIEDIIAAYQAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K I L+ ++ D++ FIG LQSNK S + FD + TVSR+K A L+ + + L
Sbjct: 63 AEKIIALKGDFPDIEWHFIGPLQSNKTSIVAQHFDWMHTVSRDKIAQRLNDQRPAELAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
+ IQ+N E KSGI Q L Q L + GLM IP A + + F +L
Sbjct: 123 NICIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALRGLMAIPTATADTELQLKEFSML 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +E K + LSMGM+ D + AI+ G+T VRIGS IFGER
Sbjct: 183 NNLFQELKSHYPNVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGER 228
>gi|77166450|ref|YP_344975.1| hypothetical protein Noc_3003 [Nitrosococcus oceani ATCC 19707]
gi|254435047|ref|ZP_05048554.1| conserved hypothetical protein TIGR00044 [Nitrosococcus oceani
AFC27]
gi|76884764|gb|ABA59445.1| Protein of unknown function UPF0001 [Nitrosococcus oceani ATCC
19707]
gi|207088158|gb|EDZ65430.1| conserved hypothetical protein TIGR00044 [Nitrosococcus oceani
AFC27]
Length = 231
Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/205 (41%), Positives = 110/205 (53%), Gaps = 9/205 (4%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
RPK SVSLVA SK IR A++CGQ F EN LQEA K L E ++ FIG +
Sbjct: 24 RPKGSVSLVAASKTCPVSAIRAAVACGQRAFGENYLQEALPKIKELETE-GLEWHFIGPI 82
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
QSNK +I + FD + +V+R K A LS + + L V +QVN E KSG +
Sbjct: 83 QSNKTRDIATHFDWVHSVARLKIAQRLSQQRPPELAPLNVCLQVNISGESSKSGTTAQEL 142
Query: 143 KDFVILCRQKYQLNVEGLMCIPP------AMGNPKPHFYLLSEIARECKLT--KLSMGMT 194
+ + +L++ GLM +P A P + L E R+ LT LSMGMT
Sbjct: 143 AELATAVVEMPRLSLRGLMTLPALNSDLEAQRRPFRTLHQLWEGLRQKGLTLDSLSMGMT 202
Query: 195 RDFELAIASGATSVRIGSGIFGERP 219
D E AIA GAT VR+G+ IFG RP
Sbjct: 203 DDLEAAIAEGATLVRVGTAIFGSRP 227
>gi|146328880|ref|YP_001209130.1| alanine racemase domain-containing protein [Dichelobacter nodosus
VCS1703A]
gi|146232350|gb|ABQ13328.1| alanine racemase domain protein [Dichelobacter nodosus VCS1703A]
Length = 264
Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 121/216 (56%), Gaps = 9/216 (4%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+Q+I +A +R +S+ L+ VSK V+++++R+A SCG I ENK+QEA KW L +
Sbjct: 40 RQRIVRAAEECQRDPNSIRLLPVSKTVNAQRLRLAHSCGMTILGENKVQEAYDKWQEL-Q 98
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
+ D++ IG LQ+NK + + + K A L + +++R L V+IQVNT
Sbjct: 99 DTDLKWAIIGHLQTNKAKYVARFASEFQALDSLKIAEELDKRLQQENRQLDVFIQVNTSN 158
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-- 185
E QK GI P +DFV L + GLM + + + F L ++ + +
Sbjct: 159 EPQKYGISPENAEDFVRQLEAFRSLRLRGLMTLAIFSSDKDTVRQCFIRLRQLRDQLQQI 218
Query: 186 ---LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +LSMGM+ DFELAIA GAT+VR+G +FG R
Sbjct: 219 NPDIAELSMGMSGDFELAIAEGATTVRVGQALFGAR 254
>gi|220903651|ref|YP_002478963.1| alanine racemase domain-containing protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219867950|gb|ACL48285.1| alanine racemase domain protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 237
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 121/239 (50%), Gaps = 19/239 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L ++ ++++ + A RP++ VSLVAVSK+ + + + GQV F EN +QE
Sbjct: 1 MELLDRYHRVLERLDAACAAAGRPREEVSLVAVSKLHPACDVAAVAAAGQVDFGENYVQE 60
Query: 61 AKKK-----WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
A +K P V+ +G +QS K ++ F ++ T+ K A +
Sbjct: 61 ALQKREELEAAPAASALHVRWHMVGHVQSRKAGQVAGAFALVHTLDSRKLADAFERRLAD 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQT---KDFVILCRQKYQLNVEGLMCIPPAMGN--- 169
V QVN E QKSGIM D+V+ L+V+GLMC+PP +
Sbjct: 121 GEARQAVLFQVNIASEPQKSGIMAADLPALADYVL--ESCPHLDVQGLMCLPPVFDSGDA 178
Query: 170 PKPHFYLLSEI-----ARE-CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+PHF LL E+ AR L LSMGM+ DFE A+ GAT VRIG+ IFG RP +T
Sbjct: 179 ARPHFALLRELRDGLRARTGLPLPVLSMGMSGDFEAAVTEGATLVRIGTDIFGLRPAKT 237
>gi|127512070|ref|YP_001093267.1| alanine racemase domain-containing protein [Shewanella loihica
PV-4]
gi|126637365|gb|ABO23008.1| alanine racemase domain protein [Shewanella loihica PV-4]
Length = 233
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 118/226 (52%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L Q+I +A + R + L+AVSK +I A GQ +F EN +QE
Sbjct: 3 TIADRLADAHQRIAQAAQNSSRDSREIQLLAVSKTKPIDQIVAAYDAGQRLFGENYVQEG 62
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K LR+ D++ FIG LQSNK I FD + T+SREK A LS + L
Sbjct: 63 EEKINALRESHGDIEWHFIGPLQSNKTKSIAEHFDWMHTLSREKIAKRLSEQRPSHLAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
V IQVN E KSG+ P++ + +L + GLM IP A + + F +
Sbjct: 123 QVCIQVNVSQEQSKSGVNPDEVAHLAEIIASLPRLTLRGLMAIPTATDDVALQQAEFSQM 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K L LSMGM++D E AIA+G+T VRIGS IFG R
Sbjct: 183 QALFEALKQQHPSLDTLSMGMSQDLEQAIAAGSTMVRIGSAIFGAR 228
>gi|225849671|ref|YP_002729905.1| pyridoxal phosphate enzyme, YggS family [Persephonella marina
EX-H1]
gi|225646566|gb|ACO04752.1| pyridoxal phosphate enzyme, YggS family [Persephonella marina
EX-H1]
Length = 228
Score = 129 bits (323), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 118/227 (51%), Gaps = 9/227 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++ I SA + R + + L+A SK +KI+ A G F EN++QE
Sbjct: 1 MSIRENVERIREIIYRSAERSGRDPEEIILLAASKTQPVEKIKEAYEAGVRYFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK L++ D+ IG LQ+NK V F++I ++ RE A L K +
Sbjct: 61 GIKKIEQLKEIRDIHWHLIGGLQTNKAKYAVRYFELIHSLDRESLADELDKRARKIGKKQ 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
V I+VN G E K G+ P + +K + + GLMCIPP + +P+F L
Sbjct: 121 DVLIEVNIGEEETKYGVKPENLEKLFEYSIKKENIRILGLMCIPPYFEDKERSRPYFVRL 180
Query: 178 SEIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + KL LSMGM+ DF++A+ GAT VRIG+ IFGER
Sbjct: 181 REMKEKLERDFGVKLPHLSMGMSHDFDVAVEEGATIVRIGTAIFGER 227
>gi|315268478|gb|ADT95331.1| alanine racemase domain protein [Shewanella baltica OS678]
Length = 239
Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 123/226 (54%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +++I +A R S+ L+AVSK + I A GQ F EN +QE
Sbjct: 10 TIADRLAIAQRRIAQAAQKCARQPSSIRLLAVSKTKPIEDIIAAYQAGQRCFGENYVQEG 69
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K I L+ ++ D++ FIG LQSNK S + FD + TVSR+K A L+ + + L
Sbjct: 70 AEKIIALKGDFPDIEWHFIGPLQSNKTSIVAQHFDWMHTVSRDKIAQRLNDQRPAELAPL 129
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
+ IQ+N E KSGI Q L Q L + GLM IP A + + F +L
Sbjct: 130 NICIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALRGLMAIPTATADTELQLKEFSML 189
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +E K + LSMGM+ D + AI+ G+T VRIGS IFGER
Sbjct: 190 NNLFQELKSHYPNVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGER 235
>gi|160876289|ref|YP_001555605.1| alanine racemase domain-containing protein [Shewanella baltica
OS195]
gi|160861811|gb|ABX50345.1| alanine racemase domain protein [Shewanella baltica OS195]
Length = 232
Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 123/226 (54%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +++I +A R S+ L+AVSK + I A GQ F EN +QE
Sbjct: 3 TIADRLAIAQRRIAQAAQKCARQPSSIRLLAVSKTKPIEDIIAAYQAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K I L+ ++ D++ FIG LQSNK S + FD + TVSR+K A L+ + + L
Sbjct: 63 AEKIIALKGDFPDIEWHFIGPLQSNKTSIVAQHFDWMHTVSRDKIAQRLNDQRPAELAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
+ IQ+N E KSGI Q L Q L + GLM IP A + + F +L
Sbjct: 123 NICIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALRGLMAIPTATADTELQLKEFSML 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +E K + LSMGM+ D + AI+ G+T VRIGS IFGER
Sbjct: 183 NNLFQELKSHYPNVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGER 228
>gi|322420078|ref|YP_004199301.1| alanine racemase domain-containing protein [Geobacter sp. M18]
gi|320126465|gb|ADW14025.1| alanine racemase domain protein [Geobacter sp. M18]
Length = 231
Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 118/227 (51%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L+ +++I +A+ A R SV LVAVSK + I A +CGQ IF EN +QE
Sbjct: 4 MAERLRKIEERIAQAALRAGRDPQSVRLVAVSKTKPAAAIADAFACGQRIFGENYVQELV 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L +E + FIGSLQSNKV +I D+I +V R A + + + +
Sbjct: 64 GKQGELTQE--ISWHFIGSLQSNKVRQIAGRVDLIHSVDRSSLAREIDRQWGALGKVCDI 121
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+QVN E K G + D V Q L V GLM +PP +P +P+F L E
Sbjct: 122 LVQVNISREETKGGTSSEELLDLVREVAQLQHLRVRGLMTMPPFFDDPEGARPYFRRLRE 181
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ +LSMGM+ DFE AI GAT VR+GS +FGER
Sbjct: 182 LAGEVAAAAIAGVEMRELSMGMSGDFEAAIEEGATLVRVGSALFGER 228
>gi|294139814|ref|YP_003555792.1| hypothetical protein SVI_1043 [Shewanella violacea DSS12]
gi|293326283|dbj|BAJ01014.1| conserved hypothetical protein [Shewanella violacea DSS12]
Length = 231
Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 120/230 (52%), Gaps = 17/230 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +IE +A ++ R + + L+AVSK + I A + GQ F EN +QE
Sbjct: 3 TIADRLANAQHRIEQAAQISSRNANEIQLLAVSKTKPNSDILAAYTAGQRRFGENYVQEG 62
Query: 62 KKKWIPLRK-----EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ K L+ EW FIG LQSNK I S F + TVSREK AS L+ + K+
Sbjct: 63 ESKVNALKDCCPEIEW----HFIGPLQSNKTKIIASHFHWMHTVSREKIASRLNEQRPKE 118
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PH 173
L + IQ+N E KSG P + + Q L + GLM IP A + +
Sbjct: 119 MPPLNICIQINISGEASKSGATPEELESLASKIEQMPNLILRGLMAIPTATSDKQLQTDE 178
Query: 174 FYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L + +E K + LSMGM+ D E AIA G+T VRIGS IFGER
Sbjct: 179 FQQLQTLYQELKSLYPRVDTLSMGMSNDLEQAIAQGSTMVRIGSAIFGER 228
>gi|187736250|ref|YP_001878362.1| alanine racemase domain protein [Akkermansia muciniphila ATCC
BAA-835]
gi|187426302|gb|ACD05581.1| alanine racemase domain protein [Akkermansia muciniphila ATCC
BAA-835]
Length = 231
Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 116/232 (50%), Gaps = 21/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ +I + + A RP SV LVAVSK ++ ++ GQ IF ENK+QE
Sbjct: 1 MSIQQNLEHILSRIRAAELRAGRPAGSVRLVAVSKTFPAEDVKACHDAGQRIFGENKVQE 60
Query: 61 AKKKW--IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL---EMIK 115
K +P EW + IG LQ NKV + + F +I V + A + E K
Sbjct: 61 GLGKIPSLPPDTEWHL----IGPLQRNKVRKALEYFTLIHAVDSLRLARFMDTVAQETGK 116
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KP 172
+ R L ++VN G E K G P + L + GLMCIPP + NP +P
Sbjct: 117 RPRIL---LEVNVGNEDSKFGFFPETLEKEWPELSSLNHLEIAGLMCIPPPVENPEEARP 173
Query: 173 HFYLLSEIAR------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+F L E+ LT+LSMGM+ DFE AI GAT VR+G+ IFG R
Sbjct: 174 YFRRLRELKEVLSGRGGATLTELSMGMSHDFETAIEEGATLVRVGTAIFGGR 225
>gi|302671116|ref|YP_003831076.1| alanine racemase domain-containing protein [Butyrivibrio
proteoclasticus B316]
gi|302395589|gb|ADL34494.1| alanine racemase domain-containing protein [Butyrivibrio
proteoclasticus B316]
Length = 230
Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 17/225 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L++ + I+++ A R + V+L+AVSK IR A++CG +F ENK+QE + K
Sbjct: 6 LEMVEANIQSACKRAGRDRSEVTLIAVSKTKPVSDIREAMACGIKVFGENKVQEIRDKTA 65
Query: 67 PLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ + W IG LQ+NKV + + +I +V K A + + K + V +
Sbjct: 66 EITEPLSW----HMIGHLQANKVKYLPGVACMIHSVDNVKLADEIEKQAAKHDIVMDVLV 121
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIA 181
+VN +E K GI P++ DFV +N+ GLM I P NP+ +F L E+
Sbjct: 122 EVNMAHEDTKFGISPDEAADFVKEISVNKHINIRGLMTIAPYTENPESNRVYFKGLRELK 181
Query: 182 RE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + LSMGMT D+E+AI GAT VR+G+GIFGER
Sbjct: 182 DKINAMNISGVHMDTLSMGMTGDYEVAIEEGATFVRVGTGIFGER 226
>gi|89091926|ref|ZP_01164881.1| hypothetical protein MED92_07161 [Oceanospirillum sp. MED92]
gi|89083661|gb|EAR62878.1| hypothetical protein MED92_07161 [Oceanospirillum sp. MED92]
Length = 236
Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 118/226 (52%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ L+ +Q+I ++A+ + R + ++L+AVSK + +R A GQ F EN LQE+
Sbjct: 3 SIAKNLEKVRQQIADTAVQSNRQSNEITLLAVSKTRPADDLRSAYEEGQRHFGENYLQES 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L + D+ FIG LQSNK + FD + TV R K A LS + +Q L
Sbjct: 63 LEKIQSL-SDLDICWHFIGPLQSNKTRTVAENFDWMHTVDRLKIAQRLSAQRPEQLAPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
+ IQVN E KSG P Q + Q +++ GLM IP A +PK ++
Sbjct: 122 ICIQVNISNEDSKSGCSPEQVAELADQISQLPNISLRGLMAIPKASSDPKEQAEAFQKMR 181
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+L LSMGM+ D AI++G+T VR+G+ IFG RP
Sbjct: 182 LLQLELQQSHPQLDTLSMGMSGDMNEAISAGSTIVRVGTAIFGPRP 227
>gi|114319503|ref|YP_741186.1| hypothetical protein Mlg_0341 [Alkalilimnicola ehrlichii MLHE-1]
gi|114225897|gb|ABI55696.1| Protein of unknown function UPF0001 [Alkalilimnicola ehrlichii
MLHE-1]
Length = 237
Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 115/229 (50%), Gaps = 15/229 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +LQV +++ + R SV L+AVSK IR AL+ GQ F EN LQE
Sbjct: 1 MDIAQRLQVVHERLRAAEHRFGRDPGSVKLLAVSKTQPVSAIRAALAAGQHAFGENYLQE 60
Query: 61 AKKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
A K L EW FIG+LQSNK ++ FD TV R K A LS + ++
Sbjct: 61 ALDKQQALADTPAEW----HFIGALQSNKTRDVAGHFDWCHTVDRLKIARRLSQQRPEER 116
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMG-----NPK 171
L V IQVN E K+G++P + + +L + GLM +P PA G P
Sbjct: 117 PPLNVCIQVNISGEASKAGVLPAGAAELAAQVAELPRLRLRGLMALPAPAEGLAAQRRPL 176
Query: 172 PHFYLLSE--IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E ++ L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 177 AALRELQEHLVSSGLALDTLSMGMSGDLEAAVAEGATLVRIGTAIFGPR 225
>gi|304410071|ref|ZP_07391690.1| alanine racemase domain protein [Shewanella baltica OS183]
gi|307302217|ref|ZP_07581975.1| alanine racemase domain protein [Shewanella baltica BA175]
gi|304351480|gb|EFM15879.1| alanine racemase domain protein [Shewanella baltica OS183]
gi|306914255|gb|EFN44676.1| alanine racemase domain protein [Shewanella baltica BA175]
Length = 239
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 122/226 (53%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +++I +A R S+ L+AVSK + I A GQ F EN +QE
Sbjct: 10 TIADRLAIAQRRIAQAAQKCARQPSSIRLLAVSKTKPIEDIIAAYQAGQRCFGENYVQEG 69
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L+ ++ D++ FIG LQSNK S + FD + TVSR+K A L+ + + L
Sbjct: 70 AEKITALKGDFPDIEWHFIGPLQSNKTSIVAQHFDWMHTVSRDKIAQRLNDQRPAEFAPL 129
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
V IQ+N E KSGI Q L Q L + GLM IP A + + F +L
Sbjct: 130 NVCIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALRGLMAIPTATADTELQLKEFSML 189
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +E K + LSMGM+ D + AI+ G+T VRIGS IFGER
Sbjct: 190 NNLFQELKSHYPNVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGER 235
>gi|124268943|ref|YP_001022947.1| hypothetical protein Mpe_A3759 [Methylibium petroleiphilum PM1]
gi|124261718|gb|ABM96712.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 238
Score = 127 bits (319), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 115/230 (50%), Gaps = 17/230 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +K+Q +I + A RP SV+L+AVSK + +R AL+ GQ F EN +QEA
Sbjct: 3 TIASKIQEVSGRIARACDAAGRPVASVTLLAVSKTFGADTVREALAAGQTRFGENYVQEA 62
Query: 62 KKKWIPL-----RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
K L R EW IG LQSNK + FD + +V R K A LS +
Sbjct: 63 LDKMAALADVRARLEW----HLIGPLQSNKTRAVAEAFDWVHSVDRLKIAQRLSEQRPDA 118
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKP 172
L V +QVN E KSG+ P++ ++ +L + GLM IP G+ +P
Sbjct: 119 LPPLQVCLQVNVSGEASKSGLAPDEVEEVARAVATLPRLRLRGLMAIPEPAGDLSAQRRP 178
Query: 173 HFYLLSEIAR----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
H L + R L LSMGMT D E A+ GAT VR+G+ IFG R
Sbjct: 179 HRALHELLERLQAGGLALDTLSMGMTADLEAAVLEGATLVRVGTAIFGGR 228
>gi|53804165|ref|YP_113991.1| hypothetical protein MCA1536 [Methylococcus capsulatus str. Bath]
gi|53757926|gb|AAU92217.1| conserved hypothetical protein TIGR00044 [Methylococcus capsulatus
str. Bath]
Length = 229
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 112/225 (49%), Gaps = 7/225 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ L LQ +Q+I + RP+DSV LVAVSK + +R A GQ F EN LQE
Sbjct: 2 LELQENLQAVRQRIRAAEQACGRPEDSVRLVAVSKTQPAAVLRAAYDLGQREFGENYLQE 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K L + D+ FIG +QSNK + FD + ++ R K A L+ + L
Sbjct: 62 AMEKQ-DLLADLDIVWHFIGPIQSNKTRLLAERFDWVHSIDRLKIAQRLNDQRPPGRAPL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQVN G E KSG+ P + +L + GLM IP + + F L
Sbjct: 121 NVCIQVNIGGEPTKSGVTPAAVAELAQAVAALPRLRLRGLMAIPAPTADEREQRAAFRRL 180
Query: 178 SEIAREC---KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E+ L LSMGM+ D E A+A G T VR+G+ IFG RP
Sbjct: 181 RELLEGLGMPGLDTLSMGMSDDLEAAVAEGTTLVRVGTAIFGRRP 225
>gi|319427153|gb|ADV55227.1| PLP-dependent amino acid racemase, YggS [Shewanella putrefaciens
200]
Length = 239
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 117/226 (51%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + + +I +A R ++ L+AVSK + I A GQ F EN +QE
Sbjct: 10 TIADRLAIAQCRIAQAAQKCARQAHNIRLLAVSKTKPIEDIIAAYHAGQRCFGENYVQEG 69
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L K + D++ FIG LQSNK + + FD + TVSR+K A L+ + L
Sbjct: 70 AAKITELSKNYPDIEWHFIGPLQSNKTNIVAQHFDWMHTVSRDKIALRLNEQRPTSMAPL 129
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V IQ+N E KSGI NQ L Q L + GLM IP A N + F L
Sbjct: 130 NVCIQINISDEDTKSGIDANQMMPLAELISQLPNLKLRGLMAIPTATDNSTLQRQEFTKL 189
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ E K + LSMGM+ D + AIA G+T VRIGS IFGER
Sbjct: 190 KQLFDELKQHYADVDTLSMGMSNDLDTAIACGSTMVRIGSAIFGER 235
>gi|120598147|ref|YP_962721.1| alanine racemase domain-containing protein [Shewanella sp. W3-18-1]
gi|146293781|ref|YP_001184205.1| alanine racemase domain-containing protein [Shewanella putrefaciens
CN-32]
gi|120558240|gb|ABM24167.1| alanine racemase domain protein [Shewanella sp. W3-18-1]
gi|145565471|gb|ABP76406.1| alanine racemase domain protein [Shewanella putrefaciens CN-32]
Length = 232
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 117/226 (51%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + + +I +A R ++ L+AVSK + I A GQ F EN +QE
Sbjct: 3 TIADRLAIAQCRIAQAAQKCARQAHNIRLLAVSKTKPIEDIIAAYHAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L K + D++ FIG LQSNK + + FD + TVSR+K A L+ + L
Sbjct: 63 AAKITELSKNYPDIEWHFIGPLQSNKTNIVAQHFDWMHTVSRDKIALRLNEQRPTSMAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V IQ+N E KSGI NQ L Q L + GLM IP A N + F L
Sbjct: 123 NVCIQINISDEDTKSGIDANQMMPLAELISQLPNLKLRGLMAIPTATDNSTLQRQEFTKL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ E K + LSMGM+ D + AIA G+T VRIGS IFGER
Sbjct: 183 KQLFDELKQHYADVDTLSMGMSNDLDTAIACGSTMVRIGSAIFGER 228
>gi|126175227|ref|YP_001051376.1| alanine racemase domain-containing protein [Shewanella baltica
OS155]
gi|125998432|gb|ABN62507.1| alanine racemase domain protein [Shewanella baltica OS155]
Length = 232
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 123/226 (54%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +++I +A R S+ L+AVSK + I A GQ F EN +QE
Sbjct: 3 TIADRLAIAQRRIAQAAQKCARQPSSIRLLAVSKTKPIEDIIAAYQAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L++++ D++ FIG LQSNK + + FD + TVSR+K A L+ + + L
Sbjct: 63 AEKITALKEDFPDIEWHFIGPLQSNKTNIVAQHFDWMHTVSRDKIAQRLNDQRPAELAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
V IQ+N E KSGI Q L Q L + GLM IP A + + F +L
Sbjct: 123 NVCIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALRGLMAIPTATADTELQLKEFSML 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +E K + LSMGM+ D + AI+ G+T VRIGS IFGER
Sbjct: 183 NNLFQELKSHYPSVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGER 228
>gi|217972518|ref|YP_002357269.1| alanine racemase domain-containing protein [Shewanella baltica
OS223]
gi|217497653|gb|ACK45846.1| alanine racemase domain protein [Shewanella baltica OS223]
Length = 239
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 122/226 (53%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +++I +A R S+ L+AVSK + I A GQ F EN +QE
Sbjct: 10 TIADRLAIAQRRIAQAAQKCARQPSSIRLLAVSKTKPIEDIIAAYQAGQRCFGENYVQEG 69
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L+ ++ D++ FIG LQSNK S + FD + TVSR+K A L+ + + L
Sbjct: 70 AEKITALKGDFPDIEWHFIGPLQSNKTSIVAQHFDWMHTVSRDKIAQRLNEQRPAELAPL 129
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
+ IQ+N E KSGI Q L Q L + GLM IP A + + F +L
Sbjct: 130 NICIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALRGLMAIPTATADTELQLKEFSML 189
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +E K + LSMGM+ D + AI+ G+T VRIGS IFGER
Sbjct: 190 NNLFQELKSHYPSVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGER 235
>gi|15605814|ref|NP_213191.1| hypothetical protein aq_274 [Aquifex aeolicus VF5]
gi|6226352|sp|O66631|Y274_AQUAE RecName: Full=UPF0001 protein aq_274
gi|2982978|gb|AAC06592.1| hypothetical protein aq_274 [Aquifex aeolicus VF5]
Length = 228
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 122/227 (53%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ +L ++I+ + A R ++ L+ SK V + IR +CG ++ EN++QE
Sbjct: 1 MNACERLSRVLERIQKACERAGRGENCAKLLGASKTVPPEVIREFYNCGLKVYGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK+ L K+ D++ FIG LQ+NKV ++ +I ++ R+ A + K +
Sbjct: 61 FLKKYEAL-KDLDLEWHFIGRLQTNKVKYLMGKVVLIHSLDRKNLADEIQKRAFKNNIVQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V I+VN G E K G+ P K+ + + V GLM IPP + NP +P+F L
Sbjct: 120 DVLIEVNVGGEETKGGVEPENLKELFEYTLELPNVKVLGLMTIPPYLENPEDVRPYFRKL 179
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ E + L LSMGM+ DFE+AI GAT VRIG+ +FGER
Sbjct: 180 RELRDELQREYNVALPHLSMGMSHDFEVAIEEGATIVRIGTLLFGER 226
>gi|119470546|ref|ZP_01613249.1| hypothetical protein ATW7_12046 [Alteromonadales bacterium TW-7]
gi|119446247|gb|EAW27524.1| hypothetical protein ATW7_12046 [Alteromonadales bacterium TW-7]
Length = 237
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 114/226 (50%), Gaps = 8/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+++ +L +I N+A R KD ++L+AVSK S I A + GQ F E+ +QE
Sbjct: 11 VTIAERLTCAYARISNAAKNTHRSKDEITLLAVSKTKPSDDIVAAYNYGQRQFGESYVQE 70
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L D+ FIG +QSNK + + FD +++V R K A L+ + L
Sbjct: 71 AVDKIAQLHTYSDIIWHFIGPIQSNKSALVAENFDWVQSVDRIKIAKRLNAQRPTSKPPL 130
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQVN E KSG PN + Q QL + GLM IP +P ++
Sbjct: 131 NVLIQVNISAEEAKSGCHPNDIANLADFISQCDQLRLRGLMSIPAKSDDPTTQTQYFEQL 190
Query: 181 --------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A+ +L LSMGM+ D E AI++G+T VRIG+ IFG R
Sbjct: 191 QTCFDKLKAQYPQLDTLSMGMSNDVEAAISAGSTMVRIGTDIFGTR 236
>gi|148265705|ref|YP_001232411.1| alanine racemase domain-containing protein [Geobacter
uraniireducens Rf4]
gi|146399205|gb|ABQ27838.1| alanine racemase domain protein [Geobacter uraniireducens Rf4]
Length = 237
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/235 (36%), Positives = 124/235 (52%), Gaps = 19/235 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ ++I +A+ A R SV LVAVSK D+ + A GQ +F EN +QE
Sbjct: 1 MFIADNLKFIHERIAAAALKAGRDPASVLLVAVSKTRDASAVDDAARSGQRLFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + + V FIG LQSNKV +I L ++I +V R A + + + +
Sbjct: 61 LVTKAAQVSE--SVAWHFIGGLQSNKVRQIAGLVEMIHSVDRLSLAREIDRQWGRLGKTC 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY---QLNVEGLMCIPPAMGNP---KPHF 174
V IQVN E K G + D + L R L ++GLM +PP +P +P+F
Sbjct: 119 NVLIQVNIACEASKCGA---NSADVLGLVRNVAALPHLRIKGLMTMPPFFDDPEGARPYF 175
Query: 175 YLLSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L ++ + ++T+LSMGM+ DFE+AIA GAT VR+GS IFGER Q
Sbjct: 176 RELKRLSELVAAERILKVEMTELSMGMSGDFEVAIAEGATLVRVGSAIFGERERQ 230
>gi|163781970|ref|ZP_02176969.1| hypothetical protein HG1285_17594 [Hydrogenivirga sp. 128-5-R1-1]
gi|159882502|gb|EDP76007.1| hypothetical protein HG1285_17594 [Hydrogenivirga sp. 128-5-R1-1]
Length = 227
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 116/227 (51%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ ++ IE + + R V L+ SK V ++I+ CG F EN++QE
Sbjct: 1 MTACGNLQHVRELIEKACARSGRSPAEVILLGASKTVPPERIKEFYECGLKTFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ LR+ D+ FIG LQ+NKV ++ +I +V R+ A + +
Sbjct: 61 FTTKYEALRR-LDIDWHFIGRLQTNKVKYLMGKVSLIHSVDRKSLADEIEKRAQRAGLIQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V ++VN G E K G+ P + + + L VEGLM IPP +P +P F L
Sbjct: 120 RVLLEVNVGGEETKGGVAPGELPELFSYVKGLPSLKVEGLMTIPPYREDPEEVRPFFSEL 179
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ R + L LSMGM+ DFE+AI GAT VR+G+ +FGER
Sbjct: 180 RELKRRLEEEFGTTLKHLSMGMSHDFEVAIEEGATIVRVGTLLFGER 226
>gi|21227777|ref|NP_633699.1| hypothetical protein MM_1675 [Methanosarcina mazei Go1]
gi|20906182|gb|AAM31371.1| conserved protein [Methanosarcina mazei Go1]
Length = 225
Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 122/227 (53%), Gaps = 18/227 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
LG + V+ EN+ ++ ++ S +LV V+K ++ ++I A+ G I EN++QE
Sbjct: 5 DLGTAMPVY----ENTKLILEKIG-STTLVCVTKTIEPERINEAIRAGATIIGENRVQEY 59
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K + + IG LQ+NKV + V LFDVI+++ K + + +
Sbjct: 60 EDKRDDI---LPCETHLIGHLQANKVKKAVHLFDVIQSIDSLKLIQNIDMRARDIDKVQR 116
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY------ 175
VY+QVN G E QK G P++ K+ + R + VEGLMCIPP + + Y
Sbjct: 117 VYLQVNIGNEPQKYGFRPDEIKNAITEIRSLRNVRVEGLMCIPPFVPPEQTRSYFRKMKA 176
Query: 176 LLSEIARECK----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L EI +E + + LSMGM+ D+ +AI GAT VR+GS IFG+R
Sbjct: 177 LFDEIKQENRDNIDIRTLSMGMSSDYRIAIEEGATMVRVGSSIFGKR 223
>gi|323702134|ref|ZP_08113801.1| alanine racemase domain protein [Desulfotomaculum nigrificans DSM
574]
gi|323532821|gb|EGB22693.1| alanine racemase domain protein [Desulfotomaculum nigrificans DSM
574]
Length = 226
Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 123/232 (53%), Gaps = 22/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + V K +I ++A+ A R + V ++AV+K V + K + A+ G EN++QE
Sbjct: 1 MSIVENITVIKNEIADAALRAGRQPNEVKIIAVTKNVAAAKAQEAVRAGLTDLGENRVQE 60
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR- 118
+ K+ + W IG LQSNKV IV D+I ++ R L+LE+ +++R
Sbjct: 61 LQNKFSEVTGARW----HLIGHLQSNKVKYIVDKVDLIHSLDRWS----LALEIDRRARE 112
Query: 119 ---FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KP 172
L +QVN E K G+ N+ KDFV + + GLM I P + +P +P
Sbjct: 113 AGKVLSALVQVNVAKETTKFGLYVNEVKDFVTEAATLRGIYIRGLMTIAPLVQDPEEVRP 172
Query: 173 HFYLLSEIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L +IA + K+ LSMGMT D+ +A+ GAT VRIG+ IFG R
Sbjct: 173 VFRQLRQIAEDLKEIPGIKMEHLSMGMTNDYRIAVEEGATMVRIGTAIFGRR 224
>gi|121997736|ref|YP_001002523.1| alanine racemase domain-containing protein [Halorhodospira
halophila SL1]
gi|121589141|gb|ABM61721.1| alanine racemase domain protein [Halorhodospira halophila SL1]
Length = 228
Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 115/225 (51%), Gaps = 10/225 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L ++++ + RP SV ++AVSK + +R A + GQ F EN LQEA
Sbjct: 4 IATRLAAVQERVRAAEADCGRPAGSVQILAVSKRHSAAAMRAAYTAGQHAFGENYLQEAT 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + ++ FIG +QSNK E+ FD + TV R K A LS + L V
Sbjct: 64 EKQAEL-ADLALEWHFIGGVQSNKTREVAERFDWVHTVDRAKIARRLSEQRPPDHPPLNV 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMG-----NPKPHFYL 176
+QVN E QK+G +P+ D + QL + GLM +P PA G P
Sbjct: 123 CLQVNISEEPQKAGCLPDDVGDLAAAVDRLPQLRLRGLMALPAPAEGFDAQRRPLARLRE 182
Query: 177 LSEIAREC---KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + RE L LSMGM+ D E AIA GAT VRIG+ IFG R
Sbjct: 183 LQQALREGGHHGLDTLSMGMSADLEAAIAEGATIVRIGTAIFGPR 227
>gi|312129486|ref|YP_003996826.1| alanine racemase domain protein [Leadbetterella byssophila DSM
17132]
gi|311906032|gb|ADQ16473.1| alanine racemase domain protein [Leadbetterella byssophila DSM
17132]
Length = 238
Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 129/223 (57%), Gaps = 10/223 (4%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ LQ+ + +I+ + A R ++ V L+ +K V + +I A+ G + AENK+QE K+K
Sbjct: 6 HNLQIIQNRIDLACAKANRSREEVRLLLATKTVTADRILTAMQAGYTLIAENKVQEVKEK 65
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFLPVY 123
+ L K++ FIG LQ+NK+ +++ I+++ R A L + K+++ + V+
Sbjct: 66 FDAL-KDFSHISHFIGHLQTNKIKDLLKCNVSCIQSLDRLDLAEKLQSRLEKENKDIDVF 124
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAMGNPKPHFYLLSEI 180
IQVNT E K GI P+Q +D V + ++N++GLM I + + + LL+ +
Sbjct: 125 IQVNTSEEESKFGIHPDQAEDLVRRVAELDRINIKGLMTIGLFSADLDKVRLCYQLLNRL 184
Query: 181 ARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E +L +LSMGM+ D E+AI GAT VR+G+ IFG+R
Sbjct: 185 RKEIQVPGVELKELSMGMSGDLEIAIEEGATIVRVGTAIFGQR 227
>gi|317486346|ref|ZP_07945176.1| alanine racemase domain-containing protein [Bilophila wadsworthia
3_1_6]
gi|316922416|gb|EFV43672.1| alanine racemase domain-containing protein [Bilophila wadsworthia
3_1_6]
Length = 236
Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 128/236 (54%), Gaps = 22/236 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
+LG +L+ + ++ +A +A R + V L+AVSK+ + I A GQ +F EN +QE
Sbjct: 8 ALGERLEAVRGRLAGAARIAGRKPEDVRLIAVSKLHPVEAILAAYGFGQRVFGENYVQEA 67
Query: 61 -AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
AK++ +P + DV+ IG +Q+NK ++ F +I TV K A L+ + +
Sbjct: 68 LAKQEALP---DLDVEWHCIGHVQTNKAKDVTGRFALIHTVDNLKFAETLARRLPEDIPV 124
Query: 120 LPVYIQVNTGYEIQKSGI----MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKP 172
V +QVN G E QK+G+ +P + + L R L V GLMC+PP + +P
Sbjct: 125 QRVLLQVNIGNEPQKAGVDEHDLPALAEAVLALPR----LEVRGLMCLPPFFDDGEAARP 180
Query: 173 HFYLLSEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+F L E+ + KL +LSMGM+ D A+ GAT VR+G+ IFG RP ++
Sbjct: 181 YFARLRELRDDLEARLGIKLPELSMGMSGDCVQAVEEGATLVRVGTDIFGPRPVKS 236
>gi|227536795|ref|ZP_03966844.1| alanine racemase domain protein [Sphingobacterium spiritivorum ATCC
33300]
gi|227243351|gb|EEI93366.1| alanine racemase domain protein [Sphingobacterium spiritivorum ATCC
33300]
Length = 244
Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 128/226 (56%), Gaps = 15/226 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ + + +I + A R + V L+ +K V +++I+VAL GQ + AENK+QE K+K+
Sbjct: 9 IALIQARIAKACTAAGRDRSEVKLLLATKTVPAERIKVALQAGQTLIAENKVQEIKEKYE 68
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRFLPVYI 124
L+ V FIG LQ+NKV +++ +D+ I+++ R + A L + ++R + V+I
Sbjct: 69 ALKDIPHVN-HFIGHLQTNKVKDLLK-YDITCIQSLDRAELAQKLHQRLKAENRTIEVFI 126
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAMGNPKPHFYLLSEIA 181
QVNT +E K G+ P++ D V L ++GLM I + F LL +I
Sbjct: 127 QVNTSFEESKFGVSPDKVVDLVKEVALLDTLKIKGLMTIGLLSTESEKVRQCFRLLKDIQ 186
Query: 182 RE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ ++ +LSMGM+ D E AIA GAT VR+G+ IFG+RP
Sbjct: 187 QQIIALDIPHVEMRELSMGMSGDLETAIAEGATVVRVGTAIFGQRP 232
>gi|288817913|ref|YP_003432260.1| alanine racemase domain protein [Hydrogenobacter thermophilus TK-6]
gi|288787312|dbj|BAI69059.1| alanine racemase domain protein [Hydrogenobacter thermophilus TK-6]
gi|308751511|gb|ADO44994.1| alanine racemase domain protein [Hydrogenobacter thermophilus TK-6]
Length = 223
Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 123/223 (55%), Gaps = 15/223 (6%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
KL+ +++++ + A R ++ V L+ SK V +++IR +CG F EN++QE KK+
Sbjct: 5 KLREVEERLQKACERAGRKREEVVLLGASKSVPAQRIREFYACGLSTFGENRVQEFLKKY 64
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP-VYI 124
L ++ + FIG LQSNKV I+ +I ++ R+ A E+ K++ + V I
Sbjct: 65 QAL-EDIAIDWHFIGRLQSNKVKYILGKVSLIHSLDRDSLAQ----EINKRANVVQNVLI 119
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA 181
+VN E K GI+P F L V GLMCIPP +P +P+F L E+
Sbjct: 120 EVNVAGEKTKGGIVPENLLAFYQHLLSYKNLRVLGLMCIPPYTEDPEKARPYFAKLRELK 179
Query: 182 RE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ KL LSMGM+ DFE+AI GAT VRIG+ +FGER
Sbjct: 180 EKLESEFLVKLPHLSMGMSTDFEVAIEEGATIVRIGTLLFGER 222
>gi|329890839|ref|ZP_08269182.1| hypothetical protein BDIM_25470 [Brevundimonas diminuta ATCC 11568]
gi|328846140|gb|EGF95704.1| hypothetical protein BDIM_25470 [Brevundimonas diminuta ATCC 11568]
Length = 253
Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 119/227 (52%), Gaps = 19/227 (8%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW- 65
L + ++I + RP DSV L+ ++K V ++ +R+A + G F ENKLQEA+ K
Sbjct: 23 LALVHRRIAAACEQVGRPIDSVRLLPITKTVPAEILRLAWAAGVTDFGENKLQEARDKAE 82
Query: 66 ----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+P+R W V +G LQSNKV + L D + K A +L+ + R +
Sbjct: 83 AMADLPMR--WHV----VGHLQSNKVKYLTRLADEFHALDSLKLAEVLNKRLETDGRDMK 136
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
VY+QVNT E K G+ P+ DF+ +L +GLM + + +P F LL
Sbjct: 137 VYVQVNTSGEESKFGLHPDDALDFIERLEAFPRLKPQGLMTLAIFSDDADRVRPCFTLLR 196
Query: 179 EIAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + ++T LSMGMT D+ELA+ GAT VR+G IFG RP
Sbjct: 197 SLRDRAERIDARITGLSMGMTGDYELAVREGATVVRVGQAIFGPRPT 243
>gi|325579003|ref|ZP_08148959.1| YggS family pyridoxal phosphate enzyme [Haemophilus parainfluenzae
ATCC 33392]
gi|325159238|gb|EGC71372.1| YggS family pyridoxal phosphate enzyme [Haemophilus parainfluenzae
ATCC 33392]
Length = 234
Score = 124 bits (312), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 118/230 (51%), Gaps = 13/230 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L+ QKI+++ LA RP+ +V+L+AVSK ++ I A GQ F EN +QE
Sbjct: 1 MTIKQALETIHQKIQDATQLAHRPESAVTLLAVSKTKPNEAILEAYHAGQKAFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K I + ++QL FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVDK-IQYFEAQNIQLEWHFIGPLQSNKTRLVAEHFDWMQTLERAKIADRLNEQRPANKA 119
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFY 175
L V IQ+N E KSGI PN+ + L + GLM IP N + F
Sbjct: 120 PLNVLIQINISDEASKSGIQPNEMIELAKHIENLPHLRLRGLMAIPAPTDNIAEQEAAFS 179
Query: 176 LLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K + LSMGMT D + AI G+T VRIG+ IFG R
Sbjct: 180 QMEQLFEQLKVAFPHQQIDTLSMGMTDDMQTAIKCGSTMVRIGTAIFGAR 229
>gi|146301878|ref|YP_001196469.1| alanine racemase domain-containing protein [Flavobacterium
johnsoniae UW101]
gi|146156296|gb|ABQ07150.1| alanine racemase domain protein [Flavobacterium johnsoniae UW101]
Length = 243
Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 12/223 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ +IE + + R V L+ +K V +++IR+A+ G+ + ENK+QE + K
Sbjct: 9 LKQVHDRIEKACKASGRDTADVQLLLATKTVPAERIRIAIEAGENLIGENKMQEFRDKDS 68
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L K+ +++ FIG LQ+NKV +++ I+++ R A L ++ K++R + V++QV
Sbjct: 69 EL-KDLNIERHFIGHLQTNKVKDVLKYVSCIQSLDRLSLAEELHKQLQKENRAIAVFVQV 127
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAMGNPKPHFYLLSEIAR- 182
NT +E K G+ P + F+ R+ L ++GLM I +P +LL EI
Sbjct: 128 NTSFEESKFGLSPTEVIPFIKEIRKYDTLKIKGLMTIGLLDVEKEKMRPSLHLLKEIRDQ 187
Query: 183 --ECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E ++ KLSMGM++D ELAIA G+ VR+G+ IFG R
Sbjct: 188 IYEAEIEGLSNLKLSMGMSQDLELAIAEGSNLVRVGTSIFGNR 230
>gi|220936080|ref|YP_002514979.1| alanine racemase domain protein [Thioalkalivibrio sp. HL-EbGR7]
gi|219997390|gb|ACL73992.1| alanine racemase domain protein [Thioalkalivibrio sp. HL-EbGR7]
Length = 236
Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 118/228 (51%), Gaps = 15/228 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++G++L + +I +A+ R +++L+AVSK ++ +R ++CGQ F EN +QE
Sbjct: 3 TIGDRLDTVRTRIHEAALRHGRDPATITLLAVSKTQPAEALREVMACGQRAFGENYVQEL 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K LR EW FIG LQSNK I L + ++ R+K A LS + ++
Sbjct: 63 ADKADALADLRPEW----HFIGPLQSNKTRLIAGLAHWVHSIERDKIARRLSEQRPGEAV 118
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PA--MGNPKPHFY 175
L V +QVN E KSG+ P + +L + GLM IP P+ + F
Sbjct: 119 DLQVCLQVNLDAEASKSGLAPEALPALAEVVAGLPRLRLRGLMAIPAPSEDFATQRRAFA 178
Query: 176 LLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E I R +L LSMGM+ D E AIA GAT VR+G+ IFG R
Sbjct: 179 RLREMQEDLIRRGHQLDTLSMGMSGDLEAAIAEGATIVRVGTAIFGSR 226
>gi|30248969|ref|NP_841039.1| hypothetical protein NE0966 [Nitrosomonas europaea ATCC 19718]
gi|30138586|emb|CAD84877.1| Uncharacterized pyridoxal-5'-phosphate dependent enzyme family
UPF0001 [Nitrosomonas europaea ATCC 19718]
Length = 238
Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 116/225 (51%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++LQ K +I +A A R +SV L+A SK K+R A GQ +F EN LQE
Sbjct: 3 TIASRLQNVKNRIIEAAKKAGRDPESVQLLAASKTNTPDKLREAWEAGQTVFGENYLQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K I + ++ FIG +QSNK I F + + REK A+ LS + L
Sbjct: 63 LVK-IRALSDLPIEWHFIGPIQSNKTKLIAENFSWVHGIDREKIATRLSAARPESLPPLQ 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
V +QVN EI KSG+ P + + ++ +L + G+M +P + F ++
Sbjct: 122 VCVQVNVSGEITKSGVDPEKAAELAAFVSEQPRLQLRGIMAVPELTAVTALQREQFQMMR 181
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + + L LSMGM+ D E AIA GAT VRIG+ IFG R
Sbjct: 182 EVYEQLQQQGFNLDTLSMGMSEDLENAIAEGATMVRIGTAIFGPR 226
>gi|54297941|ref|YP_124310.1| hypothetical protein lpp1996 [Legionella pneumophila str. Paris]
gi|53751726|emb|CAH13148.1| hypothetical protein lpp1996 [Legionella pneumophila str. Paris]
Length = 230
Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 119/227 (52%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++ I + + + R +SV L+AVSK S+ IR A G F EN QE
Sbjct: 1 MSISQNIKKVRELITQTELSSNRQPNSVLLLAVSKEQSSELIREAFQQGIRHFGENYFQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++K + L K+ + FIG +QSNK I F+ + ++ R KTA LL+ +Q +
Sbjct: 61 AQEKILAL-KDLPICWHFIGPIQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPI 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +Q+N E KSGI P D + +Q L + GLM IPP N + + L ++
Sbjct: 120 NVCLQINLAGETTKSGIPPEHAIDLALEVKQLPNLQLRGLMTIPPPQNNMQTQYDLFLKL 179
Query: 181 AR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K+ LSMGM+ D AI +G+T VRIG IFGER
Sbjct: 180 NQLMESINKTLHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGER 226
>gi|54294912|ref|YP_127327.1| hypothetical protein lpl1991 [Legionella pneumophila str. Lens]
gi|53754744|emb|CAH16231.1| hypothetical protein lpl1991 [Legionella pneumophila str. Lens]
Length = 231
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 117/227 (51%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++ I + + + R +SV L+AVSK + IR A G F EN QE
Sbjct: 1 MSISQNINKVRELITQTELSSNRQPNSVLLLAVSKEQSPELIREAFQQGIRHFGENYFQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++K + LR + + FIG +QSNK I F+ + ++ R KTA LL+ +Q L
Sbjct: 61 AQEKILALR-DLPICWHFIGPIQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +Q+N E KSGI P D + +Q L + GLM IPP N + + L ++
Sbjct: 120 NVCLQINLTGETTKSGIPPEHAIDLALEVKQLPNLQLRGLMTIPPQQNNMQTQYNLFLKL 179
Query: 181 ---------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A K+ LSMGM+ D AI +G+T VRIG IFGER
Sbjct: 180 NQLKESINKALHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGER 226
>gi|253998334|ref|YP_003050397.1| alanine racemase domain-containing protein [Methylovorus sp.
SIP3-4]
gi|253985013|gb|ACT49870.1| alanine racemase domain protein [Methylovorus sp. SIP3-4]
Length = 233
Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 116/229 (50%), Gaps = 9/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +LQ + +I SA A R ++L+AVSK ++ IR A + GQ F EN LQEA
Sbjct: 3 AITERLQAVQARICQSATAAGRDPQEITLLAVSKAQNADAIRDAWAAGQQRFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L ++ ++ FIG +QSNK I F + V R K A L+ + L
Sbjct: 63 LNKQA-LLQDLPIEWHFIGPIQSNKTQPIAQHFSWVHGVDRLKIAERLNAARPAELPPLQ 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
+ +QVN +E KSGI P + Q +L + GLM IP P M + F ++
Sbjct: 122 ICLQVNVSHEESKSGIAPEEAYALASAITQLPRLQLRGLMAIPAPTPDMELQRAQFRMVR 181
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + L LS+GM+ DF +AI GAT VR+GS IFG RP +
Sbjct: 182 ALYDALRQQGIALDTLSIGMSEDFPVAIGEGATIVRVGSAIFGPRPAKA 230
>gi|152980093|ref|YP_001352031.1| hypothetical protein mma_0341 [Janthinobacterium sp. Marseille]
gi|151280170|gb|ABR88580.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
Length = 234
Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/223 (38%), Positives = 116/223 (52%), Gaps = 11/223 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ +Q+I ++A A+R V L+AVSK ++ + A GQ F EN LQEA +K
Sbjct: 8 LQAVRQRITDAANSARRDVHGVELLAVSKTFGAEAVIAAAEAGQGAFGENYLQEALEKIA 67
Query: 67 PL---RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
+ R + ++ FIG +QSNK I FD + +V REK A LS + L +
Sbjct: 68 EVKATRPDLQLEWHFIGPIQSNKTRPIAENFDWVHSVDREKIAQRLSEQRPAHLPPLNIC 127
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--------HFY 175
+QVN E KSG++P++ +L + GLM IP A+G+ + H
Sbjct: 128 LQVNISGEASKSGVLPSEALAVAQAIAALPRLCLRGLMAIPEAVGDAEQQRAPFRQMHAL 187
Query: 176 LLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L A KL LSMGM+ D + AIA GAT VRIGS IFG R
Sbjct: 188 LEQLRAEGLKLDTLSMGMSGDMDAAIAEGATIVRIGSAIFGTR 230
>gi|90023281|ref|YP_529108.1| hypothetical protein Sde_3641 [Saccharophagus degradans 2-40]
gi|89952881|gb|ABD82896.1| Protein of unknown function UPF0001 [Saccharophagus degradans 2-40]
Length = 226
Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 116/220 (52%), Gaps = 8/220 (3%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+++ +Q+I A AKR S+ L+AVSK +++++ A GQ F EN LQEA K
Sbjct: 7 QIESVRQQITACANAAKRDPASIKLLAVSKTQPAERLQAAYEAGQRAFGENYLQEALDK- 65
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
I D++ FIG +QSNK +I FD + T+ R K A L+ + + L V IQ
Sbjct: 66 INALSNLDIEWHFIGPVQSNKTRDISENFDWVHTLDRLKIAQRLNDQRPAGTPPLNVCIQ 125
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF----YLLSEIA 181
VN E KSG +P++ + + K L + GLM IP F LL ++
Sbjct: 126 VNIDQEASKSGCLPDELEALALNVADKPNLQLRGLMAIPSPNQQGNCAFSRMRALLEQLQ 185
Query: 182 RECKLTK---LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ KL+ LSMGM+ D AIA GAT VRIG+ IFG R
Sbjct: 186 KHPKLSAMDTLSMGMSGDMAQAIAQGATIVRIGTAIFGAR 225
>gi|116621130|ref|YP_823286.1| alanine racemase domain-containing protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116224292|gb|ABJ83001.1| alanine racemase domain protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 221
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 113/220 (51%), Gaps = 7/220 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L +L + +IE +A A+R + L+AV+K+ + IR A G F EN +QE
Sbjct: 3 GLTERLTAVRLRIERAAEHARRNPAEILLLAVTKIFPASAIREAYDLGLRDFGENYVQEF 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K + + IG LQSNK S+ LF I+TV K A L+ + R L
Sbjct: 63 EGKAPEVAGLPGARFHLIGHLQSNKSSKAAELFHSIQTVDSAKLARRLN----ESGRPLD 118
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK-PH--FYLLS 178
V I+V E KSG+ P Q D + R LN+ GLM +PP +P+ P F L
Sbjct: 119 VMIEVKLSGEDAKSGVDPAQLPDLIQATRACPNLNLRGLMTMPPWSEDPEAPRAIFRTLR 178
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A E L LSMGM+ D E AI G+T VR+G+ +FG R
Sbjct: 179 ELAAEHGLPGLSMGMSNDLETAIEEGSTCVRVGTALFGRR 218
>gi|298530633|ref|ZP_07018035.1| alanine racemase domain protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298510007|gb|EFI33911.1| alanine racemase domain protein [Desulfonatronospira thiodismutans
ASO3-1]
Length = 248
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 120/228 (52%), Gaps = 14/228 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L ++KIE + + P V+LVAVSK +IR + GQV F EN +QE
Sbjct: 15 MADNLDKVRKKIEMALQKSADPAREVTLVAVSKRQPLDRIRALAAAGQVHFGENYVQEGL 74
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + +++ F GSLQSNK I F ++ ++ K A L + + PV
Sbjct: 75 EKIKDL-ENLEIKWHFTGSLQSNKARFIPGHFSLVHSLDSVKLARALQKKAAELGIVQPV 133
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF----- 174
IQVN E+QK+G+ P+ + + + L+V+GLM +PP +P +P+F
Sbjct: 134 LIQVNLAGEVQKAGVDPDHVPELIQETGRMDHLDVQGLMLMPPLADDPEESRPYFTGLRK 193
Query: 175 ---YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L E R +L LSMGM++DF A+ GAT VR+GS + G RP
Sbjct: 194 MRDTLEQETGR--RLPHLSMGMSQDFVQAVEEGATLVRVGSLLLGPRP 239
>gi|332799438|ref|YP_004460937.1| hypothetical protein TepRe1_1484 [Tepidanaerobacter sp. Re1]
gi|332697173|gb|AEE91630.1| protein of unknown function UPF0001 [Tepidanaerobacter sp. Re1]
Length = 230
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 122/224 (54%), Gaps = 23/224 (10%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
K +I+ +A A R +++ +VAV+K + + I+ A+ G V+ EN++QEA+ K K
Sbjct: 12 KSRIKFAAERAGRNPENIDIVAVTKTIPPEIIQKAVDSGLVLLGENRVQEARDK-----K 66
Query: 71 EW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS--LEMIKQSRFLPVYIQ 125
E +VQ IG LQ NKV + LF +I+++ A + E I+Q+ + V +Q
Sbjct: 67 ELVNGNVQWHLIGHLQRNKVKMALGLFSMIQSIDSLPLAEEIQKRAEQIQQT--VDVLVQ 124
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
VN G E K G+ P+ TK F+ L V GLM I P NP +P+F L EI +
Sbjct: 125 VNIGREKTKYGVDPDNTKSFIEKIALFPNLRVRGLMAIAPFKQNPEDVRPYFRQLREIFK 184
Query: 183 ECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
K T LSMGM+ DFE+A+ GA VRIG+GIFG R
Sbjct: 185 NIKQTHIDNVNMEYLSMGMSNDFEVAVEEGANMVRIGTGIFGVR 228
>gi|226324964|ref|ZP_03800482.1| hypothetical protein COPCOM_02756 [Coprococcus comes ATCC 27758]
gi|225206312|gb|EEG88666.1| hypothetical protein COPCOM_02756 [Coprococcus comes ATCC 27758]
Length = 232
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 115/207 (55%), Gaps = 13/207 (6%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R ++ V+L+AVSK + + A + G F ENK+QE +K+ + K D+ + IG L
Sbjct: 22 RKREDVTLIAVSKTKPVEMLEEAYAYGCRYFGENKVQELDEKYDIMPK--DIHWQMIGHL 79
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q NKV I+ ++I +V + A + E K+ + V ++VN E K G+MP +
Sbjct: 80 QRNKVKYIIDKAELIHSVDSIRLAETIDKEAAKKGIVVNVLLEVNMAKEDTKFGLMPEEV 139
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLS----EIARE----CKLTKLSM 191
DF+ + + V+GLM I P + NP+ HF L +IA+E ++ LSM
Sbjct: 140 MDFIHEIVRFQHIKVQGLMTIAPFVENPEENRIHFANLRKLSVDIAKEKVDNVNMSILSM 199
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GMT DFE+AI GAT VRIG+ IFGER
Sbjct: 200 GMTNDFEVAIEEGATMVRIGTAIFGER 226
>gi|84495987|ref|ZP_00994841.1| hypothetical protein JNB_00670 [Janibacter sp. HTCC2649]
gi|84382755|gb|EAP98636.1| hypothetical protein JNB_00670 [Janibacter sp. HTCC2649]
Length = 232
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 5/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L L ++I+ +A+ A R + LV V+K + + + G ENK QEA
Sbjct: 7 DLAANLARVHERIDGAAMAAGRDAGDIDLVVVTKYFPASDVDLLADLGVRHIGENKDQEA 66
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + ++ + FIG LQSNKV+ + + DV+++V R K + L + R L
Sbjct: 67 SAKVADLTRRDELTVHFIGQLQSNKVAHVAAYADVVQSVDRAKIVTGLDRAAERHGRHLD 126
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V +QV + G+ P + + L + L++ G+M + P G+P+ F L E+A
Sbjct: 127 VLLQVALDGSGSRGGVAPEEARALADLVAESACLSLRGVMAVAPLEGDPRRAFARLRELA 186
Query: 182 R-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
T +S GM+ D E A+ GAT +R+GS I G RP
Sbjct: 187 DGIRAGHSDATWISAGMSGDLEEAVLEGATHLRVGSAILGSRPS 230
>gi|309775014|ref|ZP_07670029.1| pyridoxal phosphate enzyme, YggS family [Erysipelotrichaceae
bacterium 3_1_53]
gi|308917232|gb|EFP62957.1| pyridoxal phosphate enzyme, YggS family [Erysipelotrichaceae
bacterium 3_1_53]
Length = 216
Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 114/204 (55%), Gaps = 17/204 (8%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
D+V+L+AVSK ++I A +CG +F ENK+QE K+K+ R +W IG LQ N
Sbjct: 15 DNVTLIAVSKTHTKEEIDEAYACGCRVFGENKVQELKEKY-DARYQW----HMIGHLQRN 69
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV ++V L D+I+++ + A + + K + +PV I+VN E K+G+ + F
Sbjct: 70 KVKDVVPLADMIQSLDSLRLAEEIEKQCAKIDKIMPVLIEVNISREANKTGVYMEECSAF 129
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKP-----------HFYLLSEIARECKLTKLSMGMT 194
V C Q L+V+GLMC+ P + + + L E E K+ LSMGM+
Sbjct: 130 VQQCMQFKHLDVQGLMCVGPLDADDERIEECFERMNVLYHKLQGEYGAE-KIRYLSMGMS 188
Query: 195 RDFELAIASGATSVRIGSGIFGER 218
D++LA+ G+ +R+G+ IFG+R
Sbjct: 189 SDYQLALKHGSNMIRLGTVIFGKR 212
>gi|331005494|ref|ZP_08328872.1| hypothetical protein IMCC1989_2043 [gamma proteobacterium IMCC1989]
gi|330420686|gb|EGG94974.1| hypothetical protein IMCC1989_2043 [gamma proteobacterium IMCC1989]
Length = 228
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 114/230 (49%), Gaps = 14/230 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
SL + L +Q+I +A RP++ + L+AVSK ++ I A + GQ F EN LQEA
Sbjct: 3 SLNDALIHVQQQIHIAAKKHGRPEEDIHLLAVSKTQPAETIAAAFALGQTAFGENYLQEA 62
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
++K L EW FIG +QSNK EI F + +V R K + LS +
Sbjct: 63 REKQEALAHLPIEW----HFIGPIQSNKTREIAEHFSWVHSVDRLKIVTRLSQQRPVHLP 118
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L + +QVN E KSG+ + + I Q + + GLM IP + +
Sbjct: 119 PLNICLQVNLDDETSKSGVALQELEQLAIATIQLPNVKLRGLMAIPKKTTDITQQRAAFA 178
Query: 179 EIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+AR K L LSMGM+ D E AIA GAT VR+GS IFG R Q
Sbjct: 179 TLARSLKQLSSIALLDTLSMGMSNDMEAAIAEGATIVRVGSAIFGARKSQ 228
>gi|225567964|ref|ZP_03776989.1| hypothetical protein CLOHYLEM_04037 [Clostridium hylemonae DSM
15053]
gi|225163252|gb|EEG75871.1| hypothetical protein CLOHYLEM_04037 [Clostridium hylemonae DSM
15053]
Length = 231
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 13/224 (5%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
KL+ +++I + A R + V+L+AVSK + +R A G +F ENK+QE K+
Sbjct: 5 KLENVEERIRAACERAGRNRSEVTLIAVSKTKPVETLREAYGLGVRVFGENKVQELVDKY 64
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L + D+ IG LQ NKV I+ ++I +V + A + E K + + I+
Sbjct: 65 GALPE--DIHWHMIGHLQRNKVKYIIDKAELIHSVDSLRLAETIEKEAEKHNITANILIE 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR--- 182
VN E K G+MP + + V LNV+GLM I P + NP+ + + + + +
Sbjct: 123 VNVAREESKFGVMPEELDEIVEKIAGFNHLNVKGLMTIAPYVENPEENRAVFARLRKLSV 182
Query: 183 --------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGMT D+E+A+ GAT VR+G+GIFGER
Sbjct: 183 DIASKNVDNMNMSILSMGMTNDYEVAVEEGATMVRVGTGIFGER 226
>gi|51246632|ref|YP_066516.1| hypothetical protein DP2780 [Desulfotalea psychrophila LSv54]
gi|50877669|emb|CAG37509.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 229
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 119/223 (53%), Gaps = 20/223 (8%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
K++I +A A R + + LVAVSK + ++ + A++CGQ F EN +QE ++K K
Sbjct: 10 KERIAQAAKKAGRAPEDIQLVAVSKRLPAETVLQAIACGQQQFGENYIQEVQEK-----K 64
Query: 71 EW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
E + FIG+LQSNK + ++ETV R K A L+ ++ + L + +QVN
Sbjct: 65 ELIGDKARFHFIGNLQSNKAKMAATYCSMVETVDRLKIAKALNKHSLELDKTLDILVQVN 124
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY--------L 176
G + KSG + + + + L + GLM IPP P +PHF L
Sbjct: 125 IGQDQNKSGTDKAEAAELIRQINKLPALRIRGLMTIPPLHKEPEDSRPHFRNLRTLAEKL 184
Query: 177 LSEIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+SE +C +LSMGM+ D+ +AI GAT VR+G+ IFG R
Sbjct: 185 VSENILQCDGRVELSMGMSSDYHIAIEEGATIVRVGTAIFGTR 227
>gi|225848394|ref|YP_002728557.1| pyridoxal phosphate enzyme, YggS family [Sulfurihydrogenibium
azorense Az-Fu1]
gi|225644612|gb|ACN99662.1| pyridoxal phosphate enzyme, YggS family [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 227
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ Q +++I + + R ++ V L+A SK +KI A CG F EN++QE
Sbjct: 1 MSVKENCQKIEERILKACQRSGRKREEVVLLAASKTQPVEKILQAYYCGIRYFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L+ D+ IG LQ+NKV V F++I ++ RE+ + K ++
Sbjct: 61 GIEKIEALKDYKDIHWHLIGGLQTNKVKYAVKYFEMIHSIDREELVDEIEKRASKMNKIQ 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
I+VN G E K G+ K K + + GLM IPP NP +P F L
Sbjct: 121 EGLIEVNFGEE-SKYGVKEENLKKLFEYILTKEHIKILGLMAIPPYFENPEDVRPFFRKL 179
Query: 178 SEIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + KL LSMGM+ DFE+AI GAT VRIG+ +FGER
Sbjct: 180 RQLKEDLEKDFNVKLPHLSMGMSHDFEVAIEEGATIVRIGTALFGER 226
>gi|20089382|ref|NP_615457.1| hypothetical protein MA0493 [Methanosarcina acetivorans C2A]
gi|19914277|gb|AAM03937.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 216
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 111/202 (54%), Gaps = 13/202 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
S +LV V+K ++ ++I A+ G I EN++QE + K + + IG LQ+NK
Sbjct: 16 STTLVCVTKTIEPERINEAIRAGAPIIGENRVQEYEDKRDDI---LPCETHLIGHLQTNK 72
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V + V LFDVI+++ K + + VY+QVN G E QK G P++ K+ +
Sbjct: 73 VKKAVHLFDVIQSIDSMKIIRDIDRRARDIGKVQKVYLQVNIGNEPQKYGFGPDEIKNAI 132
Query: 147 ILCRQKYQLNVEGLMCIPPAMG--NPKPHF----YLLSEIARECK----LTKLSMGMTRD 196
R + VEGLMCIPP + +P+F L E+ +E + + LSMGM+ D
Sbjct: 133 TEIRSLRNVRVEGLMCIPPFVPPEQTRPYFKKMKALFDEMKQENRDNIDIRTLSMGMSGD 192
Query: 197 FELAIASGATSVRIGSGIFGER 218
+ +AI GAT VR+GS IFG+R
Sbjct: 193 YRIAIEEGATMVRVGSAIFGKR 214
>gi|95929070|ref|ZP_01311815.1| Protein of unknown function UPF0001 [Desulfuromonas acetoxidans DSM
684]
gi|95134971|gb|EAT16625.1| Protein of unknown function UPF0001 [Desulfuromonas acetoxidans DSM
684]
Length = 230
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 121/229 (52%), Gaps = 13/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ + + L+ +Q+I + + R + L+AVSK + I ALS GQ +F E+ +QE
Sbjct: 3 VEIAHNLETIQQRITAACLRCGRDPQDIQLIAVSKKKPVELIEAALSAGQTLFGESYVQE 62
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + V+ FIG+LQSNKV + ++I +V R A ++ + K
Sbjct: 63 FIDKHQVVTGP--VRWHFIGALQSNKVKYLAGKTELIHSVDRLSLAKEINKQWGKADDVA 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
+ +QVN G E K+G+ ++ ++ V + L+VEGLM +PP N +P F LL
Sbjct: 121 RILVQVNVGDEASKAGVPVDKAEELVRQLSELPHLHVEGLMALPPYADNLEQVRPWFRLL 180
Query: 178 SEIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A + + LSMGM+ DFE+AI GAT +R+G+ IFG R
Sbjct: 181 RELAEKIDTLNLPNVSMATLSMGMSHDFEIAIEEGATLIRVGTAIFGAR 229
>gi|308050653|ref|YP_003914219.1| alanine racemase domain protein [Ferrimonas balearica DSM 9799]
gi|307632843|gb|ADN77145.1| alanine racemase domain protein [Ferrimonas balearica DSM 9799]
Length = 227
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 110/214 (51%), Gaps = 9/214 (4%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I+++A A R +S++L+AVSK ++ IR A G F EN LQE K I ++
Sbjct: 14 RIDSAAAQAGRVGESITLLAVSKTKPAEMIREAYLAGARDFGENYLQEGVDK-IDALQDL 72
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
D++ FIG LQSNK + FD I +V R K A LS + L V IQVN E
Sbjct: 73 DIRWHFIGPLQSNKTRPVAERFDWIHSVDRLKIAQRLSEQRPSGKAPLNVCIQVNISAEQ 132
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------AREC 184
KSG+ P Q + L + GLM IP +P+ L+++ A
Sbjct: 133 SKSGVNPAQLPELAAAVAALPGLRLRGLMAIPAPESDPEKQRQALAQMKQLFDALKAEHP 192
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ D E A+A G+T VRIG+ IFG R
Sbjct: 193 GLDTLSMGMSDDLEAAVAEGSTMVRIGTAIFGTR 226
>gi|52842231|ref|YP_096030.1| pyridoxal-5'-phosphate dependent enzyme family protein [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|52629342|gb|AAU28083.1| pyridoxal-5'-phosphate dependent enzyme family [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|307610739|emb|CBX00346.1| hypothetical protein LPW_20721 [Legionella pneumophila 130b]
Length = 231
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 116/227 (51%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++ I + + R +SV L+AVSK + IR A G F EN QE
Sbjct: 1 MSISQNINKVRELITQTESSSNRQPNSVLLLAVSKEQSPELIREAFQQGIRHFGENYFQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++K + LR + + FIG +QSNK I F+ + ++ R KTA LL+ +Q L
Sbjct: 61 AQEKILALR-DLPICWHFIGPIQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +Q+N E KSGI P D + +Q L + GLM IPP N + + L ++
Sbjct: 120 NVCLQINLTGETTKSGIPPEHAIDLALEVKQLPNLQLRGLMTIPPQQNNMQTQYNLFLKL 179
Query: 181 ---------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A K+ LSMGM+ D AI +G+T VRIG IFGER
Sbjct: 180 NQLKESINKALHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGER 226
>gi|260881737|ref|ZP_05405125.2| pyridoxal phosphate enzyme, YggS family [Mitsuokella multacida DSM
20544]
gi|260848290|gb|EEX68297.1| pyridoxal phosphate enzyme, YggS family [Mitsuokella multacida DSM
20544]
Length = 230
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 120/231 (51%), Gaps = 19/231 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKR---PKDS-VSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+ L +Q I+ + +A+R PKD+ V LVAV+K D + +R A+ G EN++
Sbjct: 2 IAENLHQVEQHIKEA--MARRTRVPKDAPVKLVAVTKNHDVEAMREAIDAGATDIGENRI 59
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QEAK K+ L + DV IG LQ+NK + V F +I +V E A L E K +
Sbjct: 60 QEAKSKFDILDR--DVTWHLIGHLQTNKAKQAVKYFSLIHSVDSEHLARALDKEAGKIGK 117
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
V +QVN E KSGI + + L L + GLMCI P + +P F+
Sbjct: 118 CQDVLVQVNLAKEDSKSGIYKEDLRPLLDLVDALPNLRLRGLMCIAPNYADVEACRPLFH 177
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ EI ++ K ++ LSMGMT D+++A+ GA VR+G+ IFG R
Sbjct: 178 EMYEIFQQVKEIPFKTANISYLSMGMTHDYQIAVEEGANIVRVGTAIFGPR 228
>gi|300773349|ref|ZP_07083218.1| YggS family pyridoxal phosphate enzyme [Sphingobacterium
spiritivorum ATCC 33861]
gi|300759520|gb|EFK56347.1| YggS family pyridoxal phosphate enzyme [Sphingobacterium
spiritivorum ATCC 33861]
Length = 244
Score = 122 bits (307), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 126/228 (55%), Gaps = 15/228 (6%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ + + + +I + A R + V L+ +K V + +I+ AL G + AENK+QE K+K
Sbjct: 7 DNIALIQARIAQACTAAGRDRSEVKLLLATKTVPADRIKAALQAGHTLIAENKVQEIKEK 66
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRFLPV 122
+ L+ V FIG LQ+NKV +++ +D+ ++++ R + A L + ++R + V
Sbjct: 67 YEALKDIPHVN-HFIGHLQTNKVKDLLK-YDITCVQSLDRAELAQKLHQRLKAENRTIEV 124
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAMGNPKPHFYLLSE 179
+IQVNT +E K G+ P++ D V L ++GLM I + F LL E
Sbjct: 125 FIQVNTSFEESKFGVSPHKVVDLVKEVALLDTLKIKGLMTIGLLSTESEKVRQCFRLLKE 184
Query: 180 IARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
I ++ ++ +LSMGM+ D E AIA GAT VR+G+ IFG+RP
Sbjct: 185 IQQQIIALDIPHVEMRELSMGMSGDLETAIAEGATIVRVGTAIFGQRP 232
>gi|114332299|ref|YP_748521.1| hypothetical protein Neut_2339 [Nitrosomonas eutropha C91]
gi|114309313|gb|ABI60556.1| Protein of unknown function UPF0001 [Nitrosomonas eutropha C91]
Length = 238
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 116/225 (51%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++LQ K +I ++A R ++ L+A SK K+R A GQ +F EN LQE
Sbjct: 3 TIASRLQNVKNRIIDAAKNVGRDPATIQLLAASKTNTPDKLREAWEAGQTVFGENYLQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K I + ++ FIG +QSNK I F + + REK A+ LS + L
Sbjct: 63 LVK-IRALADLPIEWHFIGPIQSNKTKLIAENFSWVHGIDREKIATRLSAARPESLPPLQ 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
V +QVN EI KSG+ P + + ++ +L + G+M +P + F ++
Sbjct: 122 VCVQVNVSGEITKSGVDPEKAAELAAFVSEQPRLQLRGIMAVPELTAVTALQREQFQMMR 181
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + K L LSMGM+ D E AIA GAT VRIG+ IFG+R
Sbjct: 182 EVYEQLKQKGFILDTLSMGMSEDLENAIAEGATMVRIGTAIFGQR 226
>gi|260222645|emb|CBA32411.1| UPF0001 protein PA0394 [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 250
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 108/229 (47%), Gaps = 17/229 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L Q+I + + RP DSV L+AVSK ++ A GQ F EN +QEA
Sbjct: 22 IADNLHAVAQRIAQACTQSGRPADSVRLLAVSKTFGPDAVQQAFDAGQRAFGENYIQEAV 81
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K I ++ IG +QSNK + F ++TV R K A LS + L V
Sbjct: 82 DK-ISALSALPIEWHCIGPIQSNKTRLVAEHFQWVQTVDRLKIAQRLSDQRPPHLPPLQV 140
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL----- 177
IQVN KSG+ P + Q +L + G+MCIP P P F
Sbjct: 141 CIQVNVDGGPTKSGVTPQDAVALALEVAQLPRLQLRGIMCIP----EPAPDFVAARAVFM 196
Query: 178 -------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ +A+ L LSMGM+ D + A+A G+T VR+GS IFG RP
Sbjct: 197 SAKAVFDAVVAQGLPLDTLSMGMSGDLDAAVAGGSTMVRVGSAIFGARP 245
>gi|15601977|ref|NP_245049.1| hypothetical protein PM0112 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|34223056|sp|Q9CPD5|Y112_PASMU RecName: Full=UPF0001 protein PM0112
gi|12720324|gb|AAK02196.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 233
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 117/235 (49%), Gaps = 23/235 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L +Q I+++ AKRP+ +V L+AVSK + I A GQ F EN +QE
Sbjct: 1 MTIEQNLAQIQQNIQHAVQQAKRPESAVKLLAVSKTKPVEDIYQAYQAGQTAFGENYVQE 60
Query: 61 A-------KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
+K IPL EW FIG LQSNK + FD ++T+ R+K A L+ +
Sbjct: 61 GVEKIQYFAQKNIPL--EW----HFIGPLQSNKTKLVAEHFDWMQTLDRKKIADRLNEQR 114
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---- 169
+ L V IQ+N E KSGI PN+ D + L + GLM IP +
Sbjct: 115 PHYKKPLNVLIQINISDEDSKSGIQPNEMLDLAKQIQNLPHLCLRGLMAIPAPTDDLATQ 174
Query: 170 ----PKPH--FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ H F L + + ++ LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 175 EQAFTQMHSLFEQLKQALPDAQIDTLSMGMTDDMASAIQCGSTMVRIGTAIFGAR 229
>gi|148359586|ref|YP_001250793.1| pyridoxal-5'-phosphate dependent enzyme family transporter protein
[Legionella pneumophila str. Corby]
gi|148281359|gb|ABQ55447.1| pyridoxal-5'-phosphate dependent enzyme family [Legionella
pneumophila str. Corby]
Length = 231
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 118/227 (51%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++ + + + + R +SV L+AVSK + IR A G F EN QE
Sbjct: 1 MSISQNIKKVRELLTQTELSSNRQPNSVLLLAVSKEQSPELIREAFEQGIRHFGENYFQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++K + L K+ + FIG +QSNK I F+ + ++ R KTA LL+ +Q L
Sbjct: 61 AQEKILAL-KDLPICWHFIGPIQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +Q+N E KSGI P D + +Q L + GLM IPP N + + L ++
Sbjct: 120 NVCLQINLAGETTKSGIPPEHAIDLALEVKQLPNLQLRGLMTIPPQQNNMQTQYDLFLKL 179
Query: 181 AR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K+ LSMGM+ D AI +G+T VRIG IFGER
Sbjct: 180 NQLKESINKTLHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGER 226
>gi|115378208|ref|ZP_01465380.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
gi|115364796|gb|EAU63859.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
Length = 210
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 107/209 (51%), Gaps = 5/209 (2%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L + ++ ++ RP +SV+L+AVSK+ IR A + GQ F EN QE +
Sbjct: 4 VAERLADIQARVASACARVGRPVESVTLIAVSKLKPGALIREAYAAGQRDFGENYAQELR 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IG LQ+NK + + + R + A LS ++ LP
Sbjct: 64 DKATELEDLAGLRWHAIGPLQTNKAKYVARVAQSFHALDRMEVARELSKRRLEAP--LPC 121
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
Y++VN G E KSG+ P FV R L +EGLM +PP +P + HF L E
Sbjct: 122 YVEVNLGGEQSKSGLTPEALGAFVDEARVLPGLRLEGLMALPPPTPDPEQARGHFRRLRE 181
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSV 208
+ARE L+ LSMG T DFE AI GAT V
Sbjct: 182 LAREHGLSGLSMGTTHDFEQAIEEGATLV 210
>gi|157960955|ref|YP_001500989.1| alanine racemase domain-containing protein [Shewanella pealeana
ATCC 700345]
gi|157845955|gb|ABV86454.1| alanine racemase domain protein [Shewanella pealeana ATCC 700345]
Length = 233
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 121/226 (53%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + + +I +A + R + V L+AVSK + +I A GQ F EN +QE
Sbjct: 3 TITDRLAIAQSRIAQAAQNSSRRAEDVQLLAVSKTKPNNQIIEAYHAGQRRFGENYVQEG 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L +++ D++ FIG LQSNK + +LFD + TV REK A L+ + +
Sbjct: 63 ESKVNALSEDYPDIEWHFIGPLQSNKTKVVATLFDWMHTVEREKIAQRLNEQRPDSMPPI 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF------ 174
V IQVN E KSG+ N+ Q L + GLM IP A + +
Sbjct: 123 NVCIQVNISQEASKSGVAANEILALADKIAQMPNLTLRGLMAIPSADVDEQTATDEMAAL 182
Query: 175 -YLLSEIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +++A+ + LS+GM+ D ELA+A G+T VRIGS IFGER
Sbjct: 183 QALYNQLAQRFDYVDTLSVGMSNDLELAVAHGSTMVRIGSAIFGER 228
>gi|221128049|ref|XP_002155398.1| PREDICTED: similar to CG1983 CG1983-PA [Hydra magnipapillata]
Length = 232
Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 108/229 (47%), Gaps = 17/229 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L Q+I + + RP DSV L+AVSK ++ A GQ F EN +QEA
Sbjct: 4 IADNLHAVAQRIAQACTQSGRPADSVRLLAVSKTFGPDAVQQAFDAGQRAFGENYIQEAV 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K I ++ IG +QSNK + F ++TV R K A LS + L V
Sbjct: 64 DK-ISALSALPIEWHCIGPIQSNKTRLVAEHFQWVQTVDRLKIAQRLSDQRPPHLPPLQV 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL----- 177
IQVN KSG+ P + Q +L + G+MCIP P P F
Sbjct: 123 CIQVNVDGGPTKSGVTPQDAVALALEVAQLPRLQLRGIMCIP----EPAPDFVAARAVFM 178
Query: 178 -------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ +A+ L LSMGM+ D + A+A G+T VR+GS IFG RP
Sbjct: 179 SAKAVFDAVVAQGLPLDTLSMGMSGDLDAAVAGGSTMVRVGSAIFGARP 227
>gi|332884875|gb|EGK05130.1| YggS family pyridoxal phosphate enzyme [Dysgonomonas mossii DSM
22836]
Length = 244
Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 123/228 (53%), Gaps = 12/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N L V Q+I+ + R + V L+ +K V +++IR AL CG+ + ENK+QE
Sbjct: 3 TVKNNLFVIHQRIKVACDRTNRDVNDVRLLLATKTVPAERIRFALDCGETLIGENKVQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+K L +++ + +IG LQ+NK+ E++ IE++ R L ++ + + +
Sbjct: 63 KEKEEKL-TQYNCEKHYIGHLQTNKIKEVLRYVTCIESIDRLDVVQKLDQRLLFEGKSID 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAMGNPKPHFYLLS 178
+ +QVN+ YE K G+ P F+ + L ++GLM I + F LL
Sbjct: 122 ILVQVNSSYEESKFGLDPINVIPFIKKIAKYDTLKIKGLMTIGLFSAEEEKVRRCFRLLK 181
Query: 179 EIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+I R+ +T+LSMGM+ D E+AI GAT +R+G+ IFGER
Sbjct: 182 DIQRQVIEENISNVDMTQLSMGMSGDLEVAIEEGATIIRVGTAIFGER 229
>gi|187922723|ref|YP_001894365.1| alanine racemase domain protein [Burkholderia phytofirmans PsJN]
gi|187713917|gb|ACD15141.1| alanine racemase domain protein [Burkholderia phytofirmans PsJN]
Length = 232
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 115/227 (50%), Gaps = 17/227 (7%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L+ +Q+I +A +A R SV L+AVSK ++ +R A + GQ F EN +QEA K
Sbjct: 6 HNLEAVQQRIAMAAHVAGRDTRSVHLLAVSKTFPAEDVRAAYAAGQRAFGENYVQEALTK 65
Query: 65 WIPLRK-----EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
L EW FIG LQSNK + FD + +V R K A LS +
Sbjct: 66 IEALADLRATLEW----HFIGPLQSNKTRPVAEQFDWVHSVDRLKIAQRLSEQRPDNLPP 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPK---PHFY 175
L V +QVN E KSG+ + + +LN+ GLM IP PA G + PH +
Sbjct: 122 LNVCLQVNISGEASKSGVSIPEAVEVAQAIAALPKLNLRGLMAIPEPAGGIDEQRVPHRH 181
Query: 176 LLSEIAREC----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L R C +L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 182 LRELFERLCNDGLELDTLSMGMSSDLEAAVLEGATIVRVGTAIFGAR 228
>gi|270157363|ref|ZP_06186020.1| conserved hypothetical protein [Legionella longbeachae D-4968]
gi|289164243|ref|YP_003454381.1| enzyme [Legionella longbeachae NSW150]
gi|269989388|gb|EEZ95642.1| conserved hypothetical protein [Legionella longbeachae D-4968]
gi|288857416|emb|CBJ11244.1| putative enzyme [Legionella longbeachae NSW150]
Length = 233
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 115/227 (50%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL L +Q I +A+ R + V L+AVSK KI+ A G F E+ QE
Sbjct: 1 MSLHQDLNRIQQLITQTALAYDRKPEGVLLLAVSKQQGVDKIQEAFRLGVKDFGESYFQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+KK L K + FIG +QSNK I +LF I ++SR K AS L+ K L
Sbjct: 61 AQKKITAL-KNLPINWHFIGPIQSNKTKGIATLFSWIHSISRLKIASQLNEYRTKDLSPL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQVN E KSGI P + + + L + GLM IPP + +P F L
Sbjct: 120 NVCIQVNLIDEKSKSGIPPEHAAELALAINKLPNLKLRGLMTIPPPINDPDLQYDVFIRL 179
Query: 178 SEIARECKLT------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+++ ++ T LSMGM+ D AI +GAT VR+G IFGER
Sbjct: 180 NQLMQQLNQTLDLNMDTLSMGMSDDLIPAIKAGATIVRVGRAIFGER 226
>gi|313200408|ref|YP_004039066.1| alanine racemase domain-containing protein [Methylovorus sp. MP688]
gi|312439724|gb|ADQ83830.1| alanine racemase domain protein [Methylovorus sp. MP688]
Length = 233
Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 115/229 (50%), Gaps = 9/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +LQ + +I SA A R ++L+AVSK ++ IR + GQ F EN LQEA
Sbjct: 3 AITERLQAVQARICQSATAAGRDPQEITLLAVSKAQNADAIRDVWAAGQQRFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L ++ ++ FIG +QSNK I F + V R K A L+ + L
Sbjct: 63 LNKQ-SLLQDLPIEWHFIGPIQSNKTQPIAQHFSWVHGVDRLKIAERLNAARPAELPPLQ 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
+ +QVN +E KSGI P + Q +L + GLM IP P M + F ++
Sbjct: 122 ICLQVNVSHEESKSGIAPEEAYALASAITQLPRLQLRGLMAIPAPTPDMELQRAQFRMVR 181
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + L LS+GM+ DF +AI GAT VR+GS IFG RP +
Sbjct: 182 ALYDALRQQGIALDTLSIGMSEDFPVAIGEGATIVRVGSAIFGPRPAKA 230
>gi|186477265|ref|YP_001858735.1| alanine racemase domain-containing protein [Burkholderia phymatum
STM815]
gi|184193724|gb|ACC71689.1| alanine racemase domain protein [Burkholderia phymatum STM815]
Length = 232
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 113/227 (49%), Gaps = 11/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + L Q+I +A +A R S++L+AVSK ++ +R A GQ F EN +QEA
Sbjct: 3 DLAHNLDAVHQRIALAARIAGRDPGSIALLAVSKTFPAEDVRAAHVAGQRAFGENYVQEA 62
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + FIG LQSNK + FD + +V R K A LS + + L
Sbjct: 63 LTKIGALSDLRASLAWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDTAPAL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK----PHFYL 176
V +QVN E KSG+ P + D +L + GLM IP G+ + PH
Sbjct: 123 NVCLQVNISGEASKSGVTPEEALDVARQVAALPRLRLRGLMAIPEPAGDVEQQRVPH-RA 181
Query: 177 LSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E+ A+ L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 182 LRELFDRLRAQGLDLDTLSMGMSGDLEAAVLEGATIVRVGTAIFGAR 228
>gi|188996752|ref|YP_001931003.1| alanine racemase domain protein [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931819|gb|ACD66449.1| alanine racemase domain protein [Sulfurihydrogenibium sp. YO3AOP1]
Length = 230
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 121/228 (53%), Gaps = 12/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + +++I+ + R ++ V L+A SK +KI A G F ENK+QE
Sbjct: 1 MSIKENVLKIEERIQKACDKVGRKREEVILLAASKTQPVEKIIEAYESGIRYFGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L++ D+ IG LQ+NKV V +++I +V R+ + K ++ +
Sbjct: 61 GIEKIEKLKEYADIHWHLIGGLQTNKVKYAVKYYELIHSVDRQALVDEIEKRGEKLNKVI 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
I+VN G E K G+ + K+ F + +KY + + GLM IPP NP +P+F
Sbjct: 121 DGLIEVNFGEE-SKFGVKKDNLKELFEYILTKKY-IKIHGLMAIPPYFENPEDVRPYFIK 178
Query: 177 LS------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E KL+ LSMGM+ DFE+AI GAT VRIG+ IFGER
Sbjct: 179 LRTLRDNLEKEYNVKLSHLSMGMSHDFEVAIEEGATIVRIGTAIFGER 226
>gi|289547896|ref|YP_003472884.1| alanine racemase domain protein [Thermocrinis albus DSM 14484]
gi|289181513|gb|ADC88757.1| alanine racemase domain protein [Thermocrinis albus DSM 14484]
Length = 225
Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 115/218 (52%), Gaps = 20/218 (9%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW-----I 66
++I + A R ++ V+L+ SK D+ +I+ A CG IF E+++Q+ KK+ +
Sbjct: 11 ERIHKACQRAGRREEEVTLLVASKYADAHQIKEAFGCGVSIFGESRVQDFLKKYEQLASL 70
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
P+R W FIG LQSNKV I+ ++I ++ R A + K + V I+V
Sbjct: 71 PIR--W----HFIGRLQSNKVKYIIEKVELIHSLDRNSLAEEIDARAKKAGKRQDVLIEV 124
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE---- 179
N G E K G+ P + F + V GLMCIPP +P +P+F L E
Sbjct: 125 NVGEEETKGGVAPQELDRFFQYVLSLEGIRVLGLMCIPPYKEDPDQVRPYFRSLREMKER 184
Query: 180 IARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ RE L LSMGM+ DFE+AI GAT VR+GS I+
Sbjct: 185 LEREYGVALPHLSMGMSHDFEVAIEEGATIVRLGSIIW 222
>gi|167626952|ref|YP_001677452.1| hypothetical protein Fphi_0729 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167596953|gb|ABZ86951.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 222
Score = 121 bits (304), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 114/202 (56%), Gaps = 14/202 (6%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
L+AVSK KI S GQ+ F EN QE ++K L +++ FIGSLQS K+
Sbjct: 24 LLAVSKYQSIDKIEYLASLGQLDFGENYFQELEQKAQQLP---NLKWHFIGSLQSRKIKH 80
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV--I 147
IV D I++V + + +S I +++++ V++Q+N ++ KSG Q D + I
Sbjct: 81 IVKYADSIQSVEKIEHLEKISKAAINENKYIDVFLQINIDDDVSKSGFKSTQLDDVIEAI 140
Query: 148 LCRQKY-QLNVEGLMCIPPAMGNPKPHFYLL--------SEIARECKLTKLSMGMTRDFE 198
+ +K+ L V GLMCIP +P+ F + + +A E KL++LSMGM+ D++
Sbjct: 141 VKAKKFSNLKVVGLMCIPAKSDSPEKSFAKMKVFFDTINASLAYELKLSRLSMGMSADYK 200
Query: 199 LAIASGATSVRIGSGIFGERPC 220
LAI G+T VRIGS +FG R
Sbjct: 201 LAIQYGSTDVRIGSSLFGIREA 222
>gi|303326576|ref|ZP_07357019.1| pyridoxal phosphate enzyme, YggS family [Desulfovibrio sp.
3_1_syn3]
gi|302864492|gb|EFL87423.1| pyridoxal phosphate enzyme, YggS family [Desulfovibrio sp.
3_1_syn3]
Length = 239
Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 119/226 (52%), Gaps = 17/226 (7%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
++++ + A R ++ V+L+AVSK+ + + GQV F EN +QEA +K L E
Sbjct: 16 ERLDAACAAAGRGREDVALIAVSKLHPAADVAAVARAGQVDFGENYVQEALQKREELAGE 75
Query: 72 ---WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
+V+ IG +QS K +++ F +I T+ K A L + PV ++VN
Sbjct: 76 PACRNVRWHMIGHVQSRKAAQVAGAFALIHTLDSRKLADGLERRLAVLEARQPVLMEVNV 135
Query: 129 GYEIQKSGIMPNQT---KDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIAR 182
E QKSGIM D+++ L + GLMC+PP A +PHF L +
Sbjct: 136 AAEPQKSGIMAEDLPVLADYIV--ENCPHLELRGLMCLPPVFDAGEAARPHFARLRVLCE 193
Query: 183 ECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
E + L +LSMGM+ DFE A+A GAT VRIG+ IFG RP +T
Sbjct: 194 ELRARLGLPLPELSMGMSGDFEAAVAEGATLVRIGTDIFGPRPPRT 239
>gi|24374863|ref|NP_718906.1| hypothetical protein SO_3352 [Shewanella oneidensis MR-1]
gi|24349558|gb|AAN56350.1|AE015772_10 conserved hypothetical protein TIGR00044 [Shewanella oneidensis
MR-1]
Length = 237
Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 113/226 (50%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L V + +I +A R S+ L+AVSK I A GQ F EN +QE
Sbjct: 3 TIADRLAVAQSRIAQAAQKCARLPHSIHLLAVSKTKPIADIIAAYDAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L+ D++ FIG LQSNK + + FD + T+SREK A L+ + L
Sbjct: 63 VTKIESLKTTHPDIEWHFIGPLQSNKTTLVAQHFDWMHTLSREKIALRLNEQRPANLAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQ+N E KSGI Q Q QL + GLM IP A + + LSE+
Sbjct: 123 NVCIQINISDEDTKSGINAQQMLPLANSISQLPQLRLRGLMAIPSATDDTEQQTRELSEL 182
Query: 181 ARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
K LSMGM+ D +LAIA G+T VRIGS IFGER
Sbjct: 183 KHLFDTLKQHYPDVDTLSMGMSNDLDLAIAYGSTMVRIGSAIFGER 228
>gi|78222116|ref|YP_383863.1| hypothetical protein Gmet_0896 [Geobacter metallireducens GS-15]
gi|78193371|gb|ABB31138.1| protein of unknown function UPF0001 [Geobacter metallireducens
GS-15]
Length = 231
Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 116/229 (50%), Gaps = 13/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L +++I A A R +SV LVAVSK ++ + A GQ +F EN +QE
Sbjct: 1 MTIASNLIHLQERIATVARRAGRDPESVRLVAVSKTKPAEAVEDAARAGQRLFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K +R+ V+ FIG+LQSNKV +I L +I +V R A + + K
Sbjct: 61 FTAKAGEVRE--PVEWHFIGALQSNKVRQIAGLVTMIHSVDRLSLAQEIERQWAKLDTTC 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V IQVN E KSG + V L V GLM +PP +P +P+F L
Sbjct: 119 DVLIQVNIAGEATKSGTTAGELLTLVREVALLPHLRVRGLMTMPPFFDDPEGARPYFREL 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A + +LSMGM+ DFE A+ GAT VRIG+ +FGER
Sbjct: 179 KRLAGVVAAAGIPGVVMDELSMGMSGDFEAAVEEGATLVRIGTSLFGER 227
>gi|225181691|ref|ZP_03735131.1| alanine racemase domain protein [Dethiobacter alkaliphilus AHT 1]
gi|225167672|gb|EEG76483.1| alanine racemase domain protein [Dethiobacter alkaliphilus AHT 1]
Length = 188
Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 100/190 (52%), Gaps = 11/190 (5%)
Query: 37 VDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV 96
V + + AL G F EN++QEA K Q FIG LQ+NK E+V F +
Sbjct: 1 VSQEVVGQALELGLNTFGENRVQEALPKVAAFP---GAQWHFIGRLQTNKAKEVVGHFAL 57
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156
+ +V R + L + +Q + IQVN G E QK GI P + +DF+ Q L
Sbjct: 58 VHSVDRWRLVQALQKQAQEQETVVRALIQVNVGGEGQKGGISPTELQDFLAETVQCKNLQ 117
Query: 157 VEGLMCIPPAMGNP---KPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSV 208
+EGLM IPP NP +P+F ++ + EC + LSMGM+ D+ +A+ GA V
Sbjct: 118 IEGLMTIPPFTENPEDARPYFREMNRLFVECSNKGFPMKYLSMGMSNDYTVAVEEGANLV 177
Query: 209 RIGSGIFGER 218
R+GS IFGER
Sbjct: 178 RVGSAIFGER 187
>gi|171058313|ref|YP_001790662.1| alanine racemase domain-containing protein [Leptothrix cholodnii
SP-6]
gi|170775758|gb|ACB33897.1| alanine racemase domain protein [Leptothrix cholodnii SP-6]
Length = 229
Score = 121 bits (303), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 116/228 (50%), Gaps = 13/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +LQ ++ N+ A+RP +SV+L+AVSK + IR A + GQ F EN +QEA
Sbjct: 3 TIATRLQQVHGRLTNACRAAQRPDNSVALLAVSKTQPADAIRCAHAAGQRAFGENYVQEA 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K LR++ ++ IG LQ NK + FD + ++ R + A LS + +
Sbjct: 63 LAKIAQLADLRQQ--IEWHLIGPLQGNKTRVVAEAFDWVHSIDRLRIAQRLSEQRPAGAA 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPHF 174
L V +QVN E KSG+ P D +L + GLM IP G+ +PH
Sbjct: 121 PLQVCLQVNISGEASKSGLAPADVADVAHAVAALPRLRLRGLMAIPEPDGDLESQRRPHR 180
Query: 175 YLL----SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L S AR L LSMGM+ D E A+ GAT VRIG+ +FG R
Sbjct: 181 ALRELFESLQARGLALDTLSMGMSADLEAAVLEGATMVRIGTAVFGAR 228
>gi|134298580|ref|YP_001112076.1| alanine racemase domain-containing protein [Desulfotomaculum
reducens MI-1]
gi|134051280|gb|ABO49251.1| alanine racemase domain protein [Desulfotomaculum reducens MI-1]
Length = 226
Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 117/227 (51%), Gaps = 12/227 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + V K KI SA+ A R SV L+AV+K V + K R + G EN++QE
Sbjct: 1 MSIAENISVIKGKIIESALRAGRDPASVRLIAVTKTVSADKARECIDAGVGDLGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L + + IG LQ+NKV I ++ ++ R A + ++
Sbjct: 61 FRNK---LPEVPGARWHLIGHLQTNKVKYITGEVTLLHSLDRWSLAEEIHKRSLEAGIVT 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
P +QVN E K G+ + +DF+ ++++GLM I P + NP +P F L
Sbjct: 118 PALVQVNVAGEETKFGMAVQEVRDFITEVAGLSGISIQGLMTIAPLVENPEEVRPVFRQL 177
Query: 178 SEIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A + K+ +LSMGMT D+++AI GAT VRIG+ IFG R
Sbjct: 178 RELATDLQEVPGVKMEQLSMGMTNDYQVAIEEGATLVRIGTAIFGSR 224
>gi|153814893|ref|ZP_01967561.1| hypothetical protein RUMTOR_01108 [Ruminococcus torques ATCC 27756]
gi|317500406|ref|ZP_07958630.1| YggS family Pyridoxal phosphate enzyme [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089587|ref|ZP_08338486.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
3_1_46FAA]
gi|145847924|gb|EDK24842.1| hypothetical protein RUMTOR_01108 [Ruminococcus torques ATCC 27756]
gi|316898161|gb|EFV20208.1| YggS family Pyridoxal phosphate enzyme [Lachnospiraceae bacterium
8_1_57FAA]
gi|330404955|gb|EGG84493.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
3_1_46FAA]
Length = 230
Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 127/230 (55%), Gaps = 19/230 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ +++I+++ A R ++ ++L+AVSK ++ A G IF ENK+QE +
Sbjct: 2 LKENLKTVEERIQSACKKAGRKREEITLIAVSKTKPPHMLQEAYDLGVRIFGENKVQEIR 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ L K D+ IG LQ+NKV IV +I +V K ++ E KQ+R + +
Sbjct: 62 EKYEVLPK--DIDWHMIGHLQTNKVKYIVDKVKLIHSVDSFKLGEVIEKEAAKQNRIIDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL---NVEGLMCIPPAMGNPKPHFYLLSE 179
++VN E K G+ +T++ + L + QL V+GLM I P + NP+ + + ++
Sbjct: 120 LLEVNVAQESSKFGL---KTEEVIPLMEKFSQLPHIRVKGLMTIAPFVENPEENRAIFAD 176
Query: 180 IAR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + ++ LSMGMT D+E+AI GAT VRIG+GIFG R
Sbjct: 177 LHKLYVDIKQKNIDNGTVSILSMGMTNDYEVAIEEGATMVRIGTGIFGAR 226
>gi|223936777|ref|ZP_03628687.1| alanine racemase domain protein [bacterium Ellin514]
gi|223894628|gb|EEF61079.1| alanine racemase domain protein [bacterium Ellin514]
Length = 241
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 116/229 (50%), Gaps = 15/229 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L L+ +Q+I + A R ++V+L AVSK IR A G +F ENK+QE
Sbjct: 1 MALAENLEKIQQRINAACERAGRQPETVTLQAVSKGQLPAAIREASKLGLTLFGENKVQE 60
Query: 61 AKKK--WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
AK K P W IG LQSNK + V F +I++V A + K ++
Sbjct: 61 AKAKIGQCPANLRW----HMIGHLQSNKCRDAVHFFQMIQSVDSLALAQEIDKWADKSAK 116
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+P+ ++VN E K G P+Q ++ +++ + GLM I P P +P F
Sbjct: 117 TMPILLEVNIAGESSKFGYRPDQLLSELLQINALHKIEIHGLMTIAPWTPEPEKVRPIFQ 176
Query: 176 LLSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + EC+ L LSMGM+ DFE+AI GAT VRIG+ +FG R
Sbjct: 177 KLRLLKEECEKILGAPLPHLSMGMSGDFEIAIEEGATIVRIGTALFGPR 225
>gi|301155770|emb|CBW15238.1| predicted enzyme [Haemophilus parainfluenzae T3T1]
Length = 235
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 117/230 (50%), Gaps = 13/230 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L+ Q+I+ S LA RP+ +V+L+AVSK ++ I A GQ F EN +QE
Sbjct: 2 MTIQQALETIHQQIQTSTQLAHRPESAVTLLAVSKTKPNEAILEAYHAGQKAFGENYVQE 61
Query: 61 AKKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K I + ++QL FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 62 GVDK-IQYFEAQNIQLEWHFIGPLQSNKTRLVAEHFDWMQTLERAKIADRLNEQRPTNKA 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFY 175
L V IQ+N E KSGI P++ + L + GLM IP N + F
Sbjct: 121 PLNVLIQINISDEASKSGIQPSEMIELAKHIENLPHLRLRGLMAIPAPTDNIAEQEAAFN 180
Query: 176 LLSEIARECKLT-------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K+ LSMGMT D + AI G+T VRIG+ IFG R
Sbjct: 181 QMEQLFEQLKIAFPHQQIDTLSMGMTDDMQSAIKCGSTMVRIGTAIFGAR 230
>gi|167758168|ref|ZP_02430295.1| hypothetical protein CLOSCI_00506 [Clostridium scindens ATCC 35704]
gi|167664065|gb|EDS08195.1| hypothetical protein CLOSCI_00506 [Clostridium scindens ATCC 35704]
Length = 231
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 118/227 (51%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ + KI+ + R +D V+L+AVSK + ++ A G IF ENK+QE
Sbjct: 2 LKENLEAVESKIQAACHSCGRSRDEVTLIAVSKTKPVETLKEAHDLGVRIFGENKVQELS 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + D+ IG LQ NKV I+ D+I +V + A + E K+ V
Sbjct: 62 DKHDLLPQ--DIHWHMIGHLQRNKVKYIIDKVDLIHSVDSLRLAEAIEKEAAKRDLVANV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
++VN E K G+MP + +F+ + V+GLM I P + NP +P F L +
Sbjct: 120 LLEVNVAKEESKFGLMPEEVFEFIDKIAGFSHIQVKGLMTIAPFVDNPEENRPIFARLRK 179
Query: 180 IARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + ++ LSMGMT D+++AI GAT VR+G+GIFG R
Sbjct: 180 LSVDIAEKNVDNITMSILSMGMTNDYQVAIEEGATMVRVGTGIFGAR 226
>gi|237749379|ref|ZP_04579859.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
gi|229380741|gb|EEO30832.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
Length = 236
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 113/228 (49%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ N LQ + IE +A A R +V L+AVSK + I A GQ+ F EN QEA
Sbjct: 3 DITNHLQTITKNIEAAASKANRGPHTVHLLAVSKTRPPEDILEAAEAGQLAFGENYEQEA 62
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K +R+ + ++ FIG +QSNK I FD + +V REK A LS + +
Sbjct: 63 VSKIESIRQSRPDLKLEWHFIGPIQSNKTRSIAEHFDWVHSVDREKIARRLSEQRPENLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
L V +QVN E KSG++P + L + GLM IP +P + F
Sbjct: 123 PLNVCLQVNISKEKTKSGVLPEEVSVLAKAVSAMPNLRLRGLMAIPEPESDPVKQREPFS 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + L LSMGM+ D E AI GAT+VRIG+ IFG+R
Sbjct: 183 AMKTLFDQLVQSGYDLDTLSMGMSDDMETAIQEGATTVRIGTAIFGKR 230
>gi|300115526|ref|YP_003762101.1| alanine racemase domain-containing protein [Nitrosococcus watsonii
C-113]
gi|299541463|gb|ADJ29780.1| alanine racemase domain protein [Nitrosococcus watsonii C-113]
Length = 231
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 106/205 (51%), Gaps = 9/205 (4%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R + SVSLVA SK IR A+ GQ F EN LQEA K L E ++ FIG +
Sbjct: 24 RSEGSVSLVAASKTCPVSAIRAAVVGGQRAFGENYLQEALPKIKELETE-GLEWHFIGPI 82
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
QSNK +I + FD + +V+R K A LS + + L V +QVN E KSG +
Sbjct: 83 QSNKTRDIATHFDWVHSVARLKIAQRLSQQRPPELAPLNVCLQVNISGESSKSGTTTQEL 142
Query: 143 KDFVILCRQKYQLNVEGLMCIPP------AMGNPKPHFYLLSEIARE--CKLTKLSMGMT 194
+ + QL++ GLM +P A P + L E R+ L LSMGMT
Sbjct: 143 AELAAAVTEMPQLSLRGLMTLPALNSDFEAQRRPFRALHQLWEELRQKGFALDSLSMGMT 202
Query: 195 RDFELAIASGATSVRIGSGIFGERP 219
D E AIA GAT VR+G+ IFG RP
Sbjct: 203 DDLEAAIAEGATLVRVGTAIFGSRP 227
>gi|147678163|ref|YP_001212378.1| hypothetical protein PTH_1828 [Pelotomaculum thermopropionicum SI]
gi|146274260|dbj|BAF60009.1| predicted enzyme [Pelotomaculum thermopropionicum SI]
Length = 226
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 120/229 (52%), Gaps = 15/229 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L +++I+ +A A R + + LVAV+K V + IR LS G E+++QE
Sbjct: 1 MSVLENLNRVRRRIDAAAGRAGRNPEEIKLVAVTKTVAVETIREVLSGGVCCLGESRVQE 60
Query: 61 AKKKW--IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K+ +P EW FIG LQ+NKV +I+ +I ++ R A LS +
Sbjct: 61 FLQKYGQLPAGVEW----HFIGHLQTNKVKKIIGKVSLIHSLDRWSLAEALSRAACEAGT 116
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
V +QVN E K G++P++T FV + L V GLM I P N +P F
Sbjct: 117 AARVLVQVNIAGEKTKYGLLPSETPQFVAEAARLPGLEVMGLMTIAPWCENAEEVRPVFR 176
Query: 176 LLSEIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E+A + K+ LSMGM+ DFE+A+ GA VR+GS IFG R
Sbjct: 177 QLKELAGKLTGLEGVKMDYLSMGMSGDFEVAVEEGANIVRVGSAIFGGR 225
>gi|296107628|ref|YP_003619329.1| pyridoxal-5'-phosphate dependent enzyme family [Legionella
pneumophila 2300/99 Alcoy]
gi|295649530|gb|ADG25377.1| pyridoxal-5'-phosphate dependent enzyme family [Legionella
pneumophila 2300/99 Alcoy]
Length = 231
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 118/227 (51%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++ + + + + R +SV L+AVSK + IR A G F EN QE
Sbjct: 1 MSISQNIKKVRELLTQTELSSNRQPNSVLLLAVSKEQSPELIREAFEQGIRHFGENYFQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++K + L K+ + FIG +QSNK I F+ + ++ R KTA LL+ +Q L
Sbjct: 61 AQEKILAL-KDLPICWHFIGPIQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +Q+N E KSGI P D + +Q L + GLM IPP N + + L ++
Sbjct: 120 NVCLQINLAGETTKSGIPPEHAIDLALEVKQLPNLQLRGLMTIPPQQNNMQTQYDLFLKL 179
Query: 181 AR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K+ LSMGM+ D AI +G+T VRIG IFG+R
Sbjct: 180 NQLKESINKTLHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGKR 226
>gi|170725693|ref|YP_001759719.1| alanine racemase domain-containing protein [Shewanella woodyi ATCC
51908]
gi|169811040|gb|ACA85624.1| alanine racemase domain protein [Shewanella woodyi ATCC 51908]
Length = 244
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 117/226 (51%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +I +A ++ R D + L+AVSK + I A + GQ F EN +QE
Sbjct: 14 TIADRLADAQHRIIQAAQISSRNSDEIQLLAVSKTKPNTDIIAAYTAGQRHFGENYVQEG 73
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L+ ++ FIG LQSNK + SLFD + T+SREK A L+ + + L
Sbjct: 74 EAKVNALKSSCPEIHWHFIGPLQSNKSKIVASLFDWMHTLSREKIAQRLNEQRPDTLQPL 133
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
V IQVN E KSG ++ + +L + GLM IP A + K F L
Sbjct: 134 NVCIQVNISQESSKSGATVDEVHSLASSISKLPKLKLRGLMAIPTATQDVLLQKAEFKKL 193
Query: 178 SEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + T LSMGM+ D E AI G+T VRIGS IFGER
Sbjct: 194 QELYLNLQATYPDIDTLSMGMSNDLEQAIEHGSTMVRIGSAIFGER 239
>gi|56476394|ref|YP_157983.1| hypothetical protein ebA1768 [Aromatoleum aromaticum EbN1]
gi|56312437|emb|CAI07082.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length = 233
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 116/228 (50%), Gaps = 15/228 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ LQ ++++ +A + R + V+L+AVSK ++ + A GQ +F EN ++E
Sbjct: 3 SISANLQAVRRRVAAAARASGRTPEDVALIAVSKTQPAQSVAEAAHAGQRLFGENYVREG 62
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K L EW FIG LQSNK + + F + +V R K A LS + +
Sbjct: 63 VAKAAELHARQLEW----HFIGPLQSNKTRPVATHFHWVHSVDRLKLAERLSEQRGDELP 118
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
L V IQVN G E KSG+ P + + +L + GLMCIP A G+ + F
Sbjct: 119 PLNVCIQVNVGGEASKSGVAPGEVPALAAAVAKLPRLALRGLMCIPEAGGDEALLRARFA 178
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L ++ L LSMGM+ D ELAIA GAT VR+G+ IFG R
Sbjct: 179 TLRQLRDRLNDAGLALDTLSMGMSDDLELAIAEGATMVRVGTAIFGAR 226
>gi|317121717|ref|YP_004101720.1| alanine racemase domain protein [Thermaerobacter marianensis DSM
12885]
gi|315591697|gb|ADU50993.1| alanine racemase domain protein [Thermaerobacter marianensis DSM
12885]
Length = 230
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 105/204 (51%), Gaps = 15/204 (7%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
++LVAVSK V +R A + G F EN+ QEA+ K+ DV F+G LQ+NKV
Sbjct: 28 ITLVAVSKTVPVAAMREAYAAGIRHFGENRAQEARDKFPAFGD--DVHWHFVGRLQTNKV 85
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
I ++ ++ R A + + R LP ++VN E K+G+ P + F+
Sbjct: 86 KYIARHCHLLHSLDRLALAQEVDRRASRCGRVLPCLVEVNVAGEATKAGLPPEKVIPFLH 145
Query: 148 LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA----RECK------LTKLSMGMT 194
L V GLM + P NP +P F L E+A R+C+ L LSMGMT
Sbjct: 146 QVAGWPGLRVVGLMTVAPRADNPEEVRPVFRRLRELAEEAARQCRGLPGIELRHLSMGMT 205
Query: 195 RDFELAIASGATSVRIGSGIFGER 218
DFE+A+ GAT VRIG IFGER
Sbjct: 206 DDFEVAVEEGATLVRIGRAIFGER 229
>gi|166031848|ref|ZP_02234677.1| hypothetical protein DORFOR_01549 [Dorea formicigenerans ATCC
27755]
gi|166028301|gb|EDR47058.1| hypothetical protein DORFOR_01549 [Dorea formicigenerans ATCC
27755]
Length = 244
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 116/229 (50%), Gaps = 17/229 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-- 60
L L+ +QKI+ + + R + V+L+AVSK ++ ++ A G +F ENK+QE
Sbjct: 12 LKENLENVEQKIQAACERSGRDRSEVTLIAVSKTKPAEMVQEAYDLGIRLFGENKVQEIM 71
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + +P D+ IG LQ NK+ I+ D+I +V + A + E K+
Sbjct: 72 DKSEVLP----ADIHWHMIGHLQRNKIKYIIDKVDLIHSVDSLRLAEAIEKEAAKKHVIA 127
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V I+VN G E K G +P + DFV + GLM P + NP+ + + +E+
Sbjct: 128 KVLIEVNVGREESKFGFLPEELDDFVEKASDFSHIQFMGLMTSAPFVDNPEENRPIFAEL 187
Query: 181 -----------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A ++ LSMGMT D+E+AI GAT VR+G+ IFG R
Sbjct: 188 RKLSVDIARKNAHNMSMSILSMGMTNDYEVAIEEGATMVRVGTAIFGAR 236
>gi|302343632|ref|YP_003808161.1| alanine racemase domain protein [Desulfarculus baarsii DSM 2075]
gi|301640245|gb|ADK85567.1| alanine racemase domain protein [Desulfarculus baarsii DSM 2075]
Length = 227
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 119/230 (51%), Gaps = 16/230 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L +Q+++ +A A R SV LVAVSK +R A++ GQ+IF EN +QE
Sbjct: 1 MSVAANLAWVRQRMDAAARRAGRDPASVRLVAVSKTRPPDDLRQAMAAGQMIFGENYVQE 60
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
AK + W FIG+LQSNK + L +V+ +V R K A+ L + + +
Sbjct: 61 LQAKAAAMGAGPRW----HFIGALQSNKARLVAQLAEVVHSVDRPKLAAALGRQAQELGK 116
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
L V +QV+ E QK+G +T + L + GLM +PP P +P F
Sbjct: 117 ELGVLVQVSLAGETQKAGCAAAETPALCQMIAATPGLRLLGLMTMPPFFDEPERARPIFA 176
Query: 176 LLSEIAR-------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +AR + +LSMGM+ DFE+AI GAT R+G+ IFG R
Sbjct: 177 ELRRLARRLAADLPPGAMNELSMGMSGDFEVAIEEGATLARVGTDIFGRR 226
>gi|330899348|gb|EGH30767.1| hypothetical protein PSYJA_18016 [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 228
Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 111/224 (49%), Gaps = 10/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A+R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAAERDPTSVGLLAVSKTKPASDLREAYTAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + L D+ L FIG +QSNK I FD + +V R K A LS + +
Sbjct: 63 LGKQLELS---DLPLCWHFIGPIQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L + IQVN E KSG P +L + GLM IP +P F
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLPALAAAIIALPRLRLRGLMAIPEPTDDPAAQDASFAA 179
Query: 177 LSEIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLNLPLDTLSMGMSHDLEAAIAQGATWVRIGTALFGAR 223
>gi|157374371|ref|YP_001472971.1| alanine racemase domain-containing protein [Shewanella sediminis
HAW-EB3]
gi|157316745|gb|ABV35843.1| alanine racemase domain protein [Shewanella sediminis HAW-EB3]
Length = 234
Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 117/226 (51%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +I +A + R D + L+AVSK I A + GQ +F EN +QE
Sbjct: 3 TIADRLANAQHRITQAAKFSSRNADEIQLLAVSKTKPITDIIAAYAAGQRLFGENYVQEG 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L+ ++Q FIG LQSNK + LFD + T+ R+K A L+ + + L
Sbjct: 63 ESKVNELKSICPEIQWHFIGPLQSNKTKVVAGLFDWMHTLCRDKIAVRLNDQRPDALKPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+ IQVN E KSGI+P++ +L + GLM IP A + K F L
Sbjct: 123 NICIQVNISGEASKSGIVPSELMVLANTIDTLPKLTLRGLMAIPTATDDKRKQKDEFQQL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K L LSMGM+ D E A+ G+T VRIGS IFGER
Sbjct: 183 QSLFLKLKAIYPDLDTLSMGMSNDLEQAVEHGSTMVRIGSAIFGER 228
>gi|114564024|ref|YP_751538.1| hypothetical protein Sfri_2860 [Shewanella frigidimarina NCIMB 400]
gi|114335317|gb|ABI72699.1| Protein of unknown function UPF0001 [Shewanella frigidimarina NCIMB
400]
Length = 228
Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 116/226 (51%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +++ + + +I +A R +SL+AVSK I A GQ +F EN +QE
Sbjct: 3 TIADRISIAQSRINQAAQKCSRSSAEISLLAVSKTKPISDIVAAYQAGQRLFGENYVQEG 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L+ ++ D++ FIG LQSNK + FD + T+SR K A L + + L
Sbjct: 63 ETKINALQADYPDIEWHFIGPLQSNKTKIVAEHFDWMHTLSRAKIAQRLHEQRPINKQPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
V IQVN E KSG+ + L + GLM IP A + + F L
Sbjct: 123 NVCIQVNISQEQSKSGVNAEDVAMLALTISSLSNLKLRGLMAIPTATDDIQLQQQEFSQL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+I + K + LSMGM+ D ++AIA+G+T VRIGS IFGER
Sbjct: 183 KQIFDQLKQQYPSVDTLSMGMSGDMDIAIANGSTMVRIGSAIFGER 228
>gi|256830503|ref|YP_003159231.1| alanine racemase domain-containing protein [Desulfomicrobium
baculatum DSM 4028]
gi|256579679|gb|ACU90815.1| alanine racemase domain protein [Desulfomicrobium baculatum DSM
4028]
Length = 231
Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 108/221 (48%), Gaps = 12/221 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+V +Q + + P DS L+AVSK+ + IR GQ +F EN +QEA K
Sbjct: 11 LKVLEQMAAAARRAGRAP-DSARLLAVSKLHPAHDIRALFEAGQPMFGENYVQEALGKMA 69
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L +E + IG LQ+NKV +V F +I V K A L + V +QV
Sbjct: 70 VLPRE--ISWHLIGHLQTNKVKSVVGRFALIHGVDSLKLARSLHCQAEAMDLTQDVLVQV 127
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE 183
N E QKSGI L GLM +PP +P +P+F L E+A
Sbjct: 128 NLAAEKQKSGIFEADLPPLAEFLAGSSFLRWRGLMLMPPFFDDPDRARPYFARLRELADT 187
Query: 184 CK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L +LSMGMT DFE AI GAT VRIG+ IFGER
Sbjct: 188 LRTGFGLALPELSMGMTGDFEAAIEEGATLVRIGTRIFGER 228
>gi|269468040|gb|EEZ79758.1| hypothetical protein Sup05_0635 [uncultured SUP05 cluster
bacterium]
Length = 212
Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 110/202 (54%), Gaps = 5/202 (2%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
I A + V+L+AVSK + ++ + GQ F EN LQE+ +K I K D+ F
Sbjct: 13 IDAVKHSQEVTLIAVSKTKPATDLQQTIDAGQRHFGENYLQESLEK-IETLKGQDLIWHF 71
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG +QSNK +I FD + +V R K A L+ + + L V +QVN E KSG++
Sbjct: 72 IGPIQSNKTKQIAENFDWVHSVDRLKIAKRLNDQRPENLEKLNVLLQVNIDNEPTKSGVL 131
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSEI-ARECKLTKLSMGMTRD 196
++ V +++ G MCIP PA N F +SEI + L LSMGM+ D
Sbjct: 132 IDEIDALVAHFENFPNISLRGFMCIPSPA--NSASSFAKMSEILKKHANLDALSMGMSSD 189
Query: 197 FELAIASGATSVRIGSGIFGER 218
ELAI +GAT VRIGS IFG+R
Sbjct: 190 LELAIENGATFVRIGSDIFGKR 211
>gi|330972631|gb|EGH72697.1| hypothetical protein PSYAR_19276 [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 228
Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 111/224 (49%), Gaps = 10/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A+R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAAERDPASVGLLAVSKTKPASDLREAYNAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + L D+ L FIG +QSNK I FD + +V R K A LS + +
Sbjct: 63 LGKQLELS---DLPLCWHFIGPIQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L + IQVN E KSG P +L + GLM IP +P F
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLPALAAAIIALPRLRLRGLMAIPEPTDDPAAQDASFAA 179
Query: 177 LSEIARECKLT--KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRALQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGAR 223
>gi|226938967|ref|YP_002794038.1| hypothetical protein LHK_00033 [Laribacter hongkongensis HLHK9]
gi|226713891|gb|ACO73029.1| Ala_racemase_N domain containing protein [Laribacter hongkongensis
HLHK9]
Length = 233
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 110/226 (48%), Gaps = 8/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+S+ + L +I + A RP SV L+AVSK ++ +R A +CGQ F EN +QE
Sbjct: 3 LSIQDALASVTSRIRAAETAAARPSGSVRLLAVSKTFPAEAVREAYACGQRAFGENYVQE 62
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L ++ FIG LQSNK + + +V R K A LS + L
Sbjct: 63 LAGKAAALADLPGLEWHFIGPLQSNKTRSVAETAHWVHSVERLKIAERLSAQRPDHLPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPK--PHFYLL 177
V +QVN E KSG P + + +L + GLMCIP PA + F L
Sbjct: 123 QVCVQVNVSGEASKSGCTPAEAPALARAVARLPRLVLRGLMCIPDPAAPAEELARQFAGL 182
Query: 178 SEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ A L LSMGM+ D E AIA G+T VR+G+ IFG R
Sbjct: 183 QQMHARLEADGLMLDTLSMGMSADLESAIAHGSTCVRVGTAIFGAR 228
>gi|149928122|ref|ZP_01916369.1| hypothetical protein LMED105_15274 [Limnobacter sp. MED105]
gi|149823208|gb|EDM82445.1| hypothetical protein LMED105_15274 [Limnobacter sp. MED105]
Length = 237
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 111/233 (47%), Gaps = 15/233 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS +L + +IEN+ A RP +V L+AVSK I +CGQ F EN LQE
Sbjct: 1 MSRATQLADIQSRIENACSKAGRPGSAVKLLAVSKTFPLSDILEFYNCGQTAFGENYLQE 60
Query: 61 AKKKWIPLRKEWDVQL-------RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
A K L + Q FIG +QSNK I F + +V R K A LS +
Sbjct: 61 ALDKITQLADHPNAQTINTNLEWHFIGPIQSNKTKPIAENFSWVHSVDRLKIAQRLSDQR 120
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--- 170
+ L V +Q+NT E KSG+ QT D + + + + GLM IP N
Sbjct: 121 PDKLGPLNVLVQINTSGEDSKSGVNAEQTADLCLQIQSLKNIALRGLMTIPSNTDNVDQL 180
Query: 171 -----KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K S ++ ++ LSMGM+ D ELAI G++ VR+GS +FG R
Sbjct: 181 KAEFLKCKLIFDSLNSKGLRMDTLSMGMSADLELAIECGSSCVRVGSALFGAR 233
>gi|238918246|ref|YP_002931760.1| pyridoxal phosphate enzyme, YggS family [Edwardsiella ictaluri
93-146]
gi|238867814|gb|ACR67525.1| pyridoxal phosphate enzyme, YggS family [Edwardsiella ictaluri
93-146]
Length = 236
Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 111/232 (47%), Gaps = 19/232 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L +Q I +A R ++L+AVSK + I A++ GQ F EN +QE
Sbjct: 4 TIKHNLDAVRQHIARAAEQCGRHPRDITLLAVSKTKPIEDIDAAIAAGQRAFGENYVQEG 63
Query: 62 KKKWIPLRK-------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
K R+ EW FIG LQSNK + FD I TV R K A L+ +
Sbjct: 64 VSKIQHYRQQPQGDALEW----HFIGPLQSNKSRPVAEHFDWIHTVDRVKIAQRLNEQRP 119
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
Q + L V IQVN E KSGI Q Q +L + GLM IP +P
Sbjct: 120 AQLKPLNVLIQVNISDEQSKSGITLEQIDALADAISQLPRLRLRGLMAIPAPEDDPARQL 179
Query: 175 YLLSEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +A R +L LS+GMT D E AI +G+T VRIG+ IFG R
Sbjct: 180 AVCTRMAQALSALQRRYPQLDTLSLGMTHDMEAAITAGSTLVRIGTAIFGAR 231
>gi|225021731|ref|ZP_03710923.1| hypothetical protein CORMATOL_01759 [Corynebacterium matruchotii
ATCC 33806]
gi|224945427|gb|EEG26636.1| hypothetical protein CORMATOL_01759 [Corynebacterium matruchotii
ATCC 33806]
Length = 262
Score = 119 bits (297), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 108/224 (48%), Gaps = 12/224 (5%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67
Q ++I N+A A R + L+AVSK +A G + EN+ QE +K
Sbjct: 34 QAVTERIANAAHAAGRDPADIRLIAVSKTFPISHALLAAEAGMTVLGENRPQELAEKAQA 93
Query: 68 LR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
R + DV IG LQ NK EI + + A L + +R L V+IQV
Sbjct: 94 FRIRGVDVTWCAIGHLQRNKAKEIAQFAAEFHALDSLRLAEALQHRLELANRTLDVFIQV 153
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIARE 183
NT +E QKSG P++ + +L V GLM + P +P F L + +
Sbjct: 154 NTSHESQKSGFAPDEVAAILPSLATLDRLRVRGLMTMAAFSPEESVVRPSFEQLRTLRDQ 213
Query: 184 CKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+L T+LSMGMT DFE AIA GATSVRIG+ IFG RP
Sbjct: 214 LQLDAPDGMSLTELSMGMTGDFEWAIAEGATSVRIGTAIFGHRP 257
>gi|313900932|ref|ZP_07834422.1| pyridoxal phosphate enzyme, YggS family [Clostridium sp. HGF2]
gi|312954352|gb|EFR36030.1| pyridoxal phosphate enzyme, YggS family [Clostridium sp. HGF2]
Length = 216
Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 113/210 (53%), Gaps = 17/210 (8%)
Query: 20 LAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFI 79
+ K D V+L+AVSK ++I A +CG +F ENK+QE K+K+ R +W I
Sbjct: 9 IQKHLPDHVTLIAVSKTHTKEEIDEAYACGCRVFGENKVQELKEKYDD-RYQW----HMI 63
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G LQ NKV ++V L D+I+++ + A + + K + +PV I+VN E K+G+
Sbjct: 64 GHLQRNKVKDVVPLADMIQSLDSLRLAEEIEKQCAKIDKIMPVLIEVNISREANKTGVYM 123
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP-----------HFYLLSEIARECKLTK 188
+ FV C Q L+V+GLMC+ P + L SE E ++
Sbjct: 124 EECPAFVKQCMQYKHLDVQGLMCVGPLDADRDRIEECFERMNILFHKLQSEYGSE-QIRY 182
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D+ +A+ G+ +R+G+ IFG+R
Sbjct: 183 LSMGMSDDYPIALKHGSNMIRLGTVIFGKR 212
>gi|291615213|ref|YP_003525370.1| alanine racemase domain protein [Sideroxydans lithotrophicus ES-1]
gi|291585325|gb|ADE12983.1| alanine racemase domain protein [Sideroxydans lithotrophicus ES-1]
Length = 226
Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 108/225 (48%), Gaps = 15/225 (6%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ LQ + I +AI A R V L+AVSK ++ +R A GQ F EN LQEA +K
Sbjct: 6 SNLQATRDAIAQAAISAHRNVAEVHLLAVSKTFPAEAVREAYRGGQAAFGENYLQEALEK 65
Query: 65 WIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
LR EW FIG +QSNK I F + +V R K A LS + Q L
Sbjct: 66 IAALRDLPLEW----HFIGPIQSNKTRAIAENFAWVHSVDRLKIAERLSAQRPSQLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
+ +QVN E KSG+ P + L + GLM IP + + +++
Sbjct: 122 ICLQVNVSGEESKSGVAPAEVAQLAQDVAHLPNLRLRGLMTIPSPAADQEQQRAPFAQMR 181
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ L LSMGMT DF AI GAT VR+G+ IFG+R
Sbjct: 182 ALLKQLNSQGMSLDTLSMGMTHDFPAAIMEGATIVRVGTAIFGQR 226
>gi|148244385|ref|YP_001219079.1| hypothetical protein COSY_0225 [Candidatus Vesicomyosocius okutanii
HA]
gi|146326212|dbj|BAF61355.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii
HA]
Length = 212
Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 107/192 (55%), Gaps = 1/192 (0%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SV+LVAVSK +++ A+ GQ FAEN LQEA K L+ + ++ FIG +QSNK
Sbjct: 21 SVTLVAVSKTRSVYELQQAIDVGQQHFAENYLQEALIKINHLKGQ-NLIWHFIGPIQSNK 79
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
+I FD + ++ R K A L+ + K L V +Q+N E KSG++ Q + +
Sbjct: 80 TLKIAKNFDWVHSIGRLKIAQRLNDQRPKNLPKLKVLLQINIDNEPTKSGVLVGQIDELI 139
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT 206
L + G MC+P + + + + I + L LSMGM+ D ELAI +GAT
Sbjct: 140 THFESLKNLTLRGFMCVPNPFSSAQSFSRMENIIKQYSNLDVLSMGMSHDLELAIENGAT 199
Query: 207 SVRIGSGIFGER 218
SVRIG+ IFG+R
Sbjct: 200 SVRIGADIFGKR 211
>gi|153853146|ref|ZP_01994555.1| hypothetical protein DORLON_00540 [Dorea longicatena DSM 13814]
gi|149753932|gb|EDM63863.1| hypothetical protein DORLON_00540 [Dorea longicatena DSM 13814]
Length = 232
Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 118/227 (51%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ ++ I+ + A R +D V+L+AVSK + ++ A G I ENK QE
Sbjct: 2 LKENLEKVEENIQAACDRAGRKRDEVTLIAVSKTKPVEMLQEAYDLGVRINGENKAQELA 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L K D+ IG +Q NKV I+ D+I +V + A + E K +
Sbjct: 62 SKYEVLPK--DIHWHMIGHMQRNKVKYIIDKVDLIHSVDSVRLAETIDKEAEKHGVIANI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK------PHFYL 176
I+VN E K G+MP + +FV + V+GLM I P + NP+ H
Sbjct: 120 LIEVNVAKEESKFGLMPEEVPEFVEKIAGFPHIRVKGLMTIAPFVENPEENRPIFAHLRK 179
Query: 177 LS-EIARE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LS +IA++ ++ LSMGMT D+++AI GAT VR+G+GIFG R
Sbjct: 180 LSVDIAKKNIDNITMSILSMGMTNDYQVAIEEGATMVRVGTGIFGAR 226
>gi|145589964|ref|YP_001156561.1| alanine racemase domain-containing protein [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145048370|gb|ABP34997.1| alanine racemase domain protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 241
Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 116/233 (49%), Gaps = 22/233 (9%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N +QV +++IE + + AKR + V L+AVSK + + A+ GQ F EN +QEA +K
Sbjct: 7 NLVQV-QERIELAVLAAKREPEEVELLAVSKTFPAAAVEEAMHAGQSAFGENYVQEAVEK 65
Query: 65 WIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ L K W + FIG LQSNK E+ FD + +V R K A LS + + S P+
Sbjct: 66 ILKLSKLRPW-LTWHFIGPLQSNKTREVAEHFDWVHSVDRLKIAERLSTQRGEFSELAPL 124
Query: 123 Y--IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+QVN E KSGI + + Q + + GLM IP NP + +
Sbjct: 125 QLCVQVNVSEEESKSGIALTEAETLCNAISQLPHVVLRGLMAIPAPTDNPAAQREAFATV 184
Query: 181 AREC---------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R C LSMGM+ D E AIA G+T VR+G+ IFG+R
Sbjct: 185 -RACFERIRDTHTIEPGFQFFDTLSMGMSDDLEAAIAEGSTMVRVGTAIFGKR 236
>gi|307728514|ref|YP_003905738.1| alanine racemase domain-containing protein [Burkholderia sp.
CCGE1003]
gi|307583049|gb|ADN56447.1| alanine racemase domain protein [Burkholderia sp. CCGE1003]
Length = 232
Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/231 (37%), Positives = 116/231 (50%), Gaps = 25/231 (10%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L+ +Q+I +A +A R S++L+AVSK ++ +R A + GQ F EN +QEA K
Sbjct: 6 HNLEAVQQRIATAAHVAGRDARSIALLAVSKTFPAEDVRAAHAAGQRAFGENYVQEALTK 65
Query: 65 WIPLRK-----EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
L EW FIG LQSNK + FD + +V R K A LS + +
Sbjct: 66 IEALGDLRTSLEW----HFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPEHLPP 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQ----TKDFVILCRQKYQLNVEGLMCIPPAMGNPK---- 171
L V +QVN E KSG+ + K+ L R L + GLM IP GN
Sbjct: 122 LNVCLQVNISGEASKSGVSAEEALQVAKEIAALPR----LRLRGLMAIPEPAGNIDQQRV 177
Query: 172 PHFYL--LSEIARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
PH L L E R+ L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 178 PHRRLRELFERLRDDGLPLDTLSMGMSSDLEAAVLEGATIVRVGTAIFGAR 228
>gi|241667528|ref|ZP_04755106.1| hypothetical protein FphipA2_02080 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254876074|ref|ZP_05248784.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842095|gb|EET20509.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 222
Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/202 (37%), Positives = 113/202 (55%), Gaps = 14/202 (6%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
L+AVSK KI S GQ+ F EN QE ++K L +++ FIGSLQS K+
Sbjct: 24 LLAVSKYQSIDKIEYLASLGQLDFGENYFQELEQKAQQLP---NLKWHFIGSLQSRKIKH 80
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV--I 147
IV D I++V + + +S I +++ + V++Q+N ++ KSG Q D + I
Sbjct: 81 IVKYADSIQSVEKIEHLEKISKAAINENKHIDVFLQINIDDDVSKSGFKSIQLDDVIEAI 140
Query: 148 LCRQKY-QLNVEGLMCIPPAMGNPKPHFYLL--------SEIARECKLTKLSMGMTRDFE 198
+ +K+ L V GLMCIP +P+ F + + +A E KL++LSMGM+ D++
Sbjct: 141 VKAKKFSNLKVVGLMCIPAKSDSPEKSFAKMKVFFDTINASLAYELKLSRLSMGMSADYK 200
Query: 199 LAIASGATSVRIGSGIFGERPC 220
LAI G+T VRIGS +FG R
Sbjct: 201 LAIQYGSTDVRIGSSLFGIREA 222
>gi|313901905|ref|ZP_07835324.1| alanine racemase domain protein [Thermaerobacter subterraneus DSM
13965]
gi|313467846|gb|EFR63341.1| alanine racemase domain protein [Thermaerobacter subterraneus DSM
13965]
Length = 230
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 107/205 (52%), Gaps = 15/205 (7%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V+LVAVSK V +R A + G F EN+ QEA+ K+ P E DV+ F+G LQ+NK
Sbjct: 27 EVTLVAVSKTVPVAAMREAYAAGIRDFGENRAQEARDKF-PAFGE-DVRWHFVGRLQTNK 84
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V I ++ ++ R A + + R LP ++VN E K+G+ P + F+
Sbjct: 85 VKYIARHCHLLHSLDRLALAQEVDRRAGRCGRVLPCLVEVNVAGEPTKAGLPPEKVVPFL 144
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNP---KPHFY----LLSEIARECK------LTKLSMGM 193
L V GLM + P +P +P F L E AR+C+ L LSMGM
Sbjct: 145 QQVAGMKGLQVVGLMTVAPPTDDPERVRPVFRQLRQLAEEAARQCRGLPGIELRHLSMGM 204
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
T DFE+A+ GAT VRIG IFGER
Sbjct: 205 TDDFEVAVEEGATIVRIGRAIFGER 229
>gi|305681060|ref|ZP_07403867.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium
matruchotii ATCC 14266]
gi|305659265|gb|EFM48765.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium
matruchotii ATCC 14266]
Length = 246
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 108/224 (48%), Gaps = 12/224 (5%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67
Q ++I N+A A R + L+AVSK +A G + EN+ QE +K
Sbjct: 18 QAVTERIANAAHAAGRDPADIRLIAVSKTFPISHALLAAEAGMTVLGENRPQELAEKAQA 77
Query: 68 LR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
R + DV IG LQ NK EI + + A L + +R L V+IQV
Sbjct: 78 FRIRGVDVTWCAIGHLQRNKAKEIAQFAAEFHALDSLRLAEALQHRLELANRTLDVFIQV 137
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIARE 183
NT +E QKSG P++ + +L+V GLM + P +P F L +
Sbjct: 138 NTSHESQKSGFAPDKVAAILPSLATLDRLHVRGLMTMAAFSPEESVVRPSFEQLRTLRDR 197
Query: 184 CK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ LT+LSMGMT DFE AIA GATSVRIG+ IFG RP
Sbjct: 198 LQPDAPDGMSLTELSMGMTGDFEWAIAEGATSVRIGTAIFGHRP 241
>gi|332981918|ref|YP_004463359.1| alanine racemase domain-containing protein [Mahella australiensis
50-1 BON]
gi|332699596|gb|AEE96537.1| alanine racemase domain protein [Mahella australiensis 50-1 BON]
Length = 233
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 125/239 (52%), Gaps = 29/239 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + K++I+ +A + R D + L+AV+K VD ++I+ A++ G EN++QE
Sbjct: 5 IASNIDRVKERIKKAAERSGRSVDDIVLIAVTKTVDVERIKAAVNYGIKDLGENRVQELT 64
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ------ 116
K+ P + DV+ IG LQ+NKV I+ +I +V SL+++K+
Sbjct: 65 AKY-PYISD-DVRWHMIGRLQTNKVKYIIDRVSLIHSVD--------SLKLLKEIDKRSE 114
Query: 117 --SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---K 171
+R + + I+VN E K G+ DFV + ++GLM + P +P +
Sbjct: 115 IANRMMDILIEVNVAGEASKGGVAVEDVIDFVKQSAVFENIRIKGLMTVAPQTDDPEIVR 174
Query: 172 PHFYLLSEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
P+F + E++ ++ LSMGM+ DFE+AI G+ VRIG+ IFGERP T
Sbjct: 175 PYFAQMKELSFKIEKLKLDNVEMKYLSMGMSGDFEVAIEEGSNMVRIGTAIFGERPINT 233
>gi|268317716|ref|YP_003291435.1| alanine racemase domain-containing protein [Rhodothermus marinus
DSM 4252]
gi|262335250|gb|ACY49047.1| alanine racemase domain protein [Rhodothermus marinus DSM 4252]
Length = 244
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 114/231 (49%), Gaps = 14/231 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
++ +L +++IE + A R D V+L+ V+K ++ A G F EN++QE
Sbjct: 11 AIRERLAWIQERIERACRRAGRSPDEVTLIGVTKTFPVAVVQAAYEAGLRHFGENRVQEL 70
Query: 61 -AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
AK +P R E +V IG LQ NK ++V+ D + ++ + A L R
Sbjct: 71 VAKAAVLPGRIEGGEVTWHMIGHLQRNKARDVVAHADWLHSLDNLRLAETLERRAAMADR 130
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
LP +++VN E K G+ P+ DF+ L + GLM + +P +P F
Sbjct: 131 VLPCFVEVNVSGEPTKFGLEPDAVHDFLDALAPFEHLEIVGLMTLAAPAEDPEAVRPQFR 190
Query: 176 LLSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL +A +L LSMGM+ DFE+AI GAT VRIGS +FG R
Sbjct: 191 LLRRLAETYDRRNNPRVQLRYLSMGMSGDFEVAIEEGATHVRIGSALFGPR 241
>gi|197121761|ref|YP_002133712.1| alanine racemase domain protein [Anaeromyxobacter sp. K]
gi|196171610|gb|ACG72583.1| alanine racemase domain protein [Anaeromyxobacter sp. K]
Length = 223
Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 108/203 (53%), Gaps = 1/203 (0%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL 76
+AI A P V+LVAVSK + IR A + GQ F EN QE + K L ++
Sbjct: 8 AAIRADLPA-GVTLVAVSKTQPPEAIREAYAAGQRDFGENYAQEWRAKADALADLPGLRW 66
Query: 77 RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG 136
FIG LQ+NK + ++ V RE+ A+ LS ++ V ++VN G E K G
Sbjct: 67 HFIGGLQTNKAKYLAGRVALVHAVDREELAAELSRRFGQKGATARVLLEVNVGGEASKEG 126
Query: 137 IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRD 196
P++ + R + + GLMCIPP +P+PHF L + L +LSMGM+ D
Sbjct: 127 CPPDRVEALAAAVRALPSIELAGLMCIPPPDDDPRPHFRALRALRDRLGLRELSMGMSAD 186
Query: 197 FELAIASGATSVRIGSGIFGERP 219
+ +A+ GAT VR+GS IFG RP
Sbjct: 187 WRIAVEEGATLVRVGSAIFGARP 209
>gi|293400021|ref|ZP_06644167.1| pyridoxal phosphate enzyme, YggS family [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291306421|gb|EFE47664.1| pyridoxal phosphate enzyme, YggS family [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 216
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 114/212 (53%), Gaps = 16/212 (7%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL 76
SAI PKD V L+AVSK ++I A + G IF ENK+QE K+K+ P W
Sbjct: 7 SAIQRDLPKDVV-LIAVSKTHTKEEIDEAYASGCRIFGENKVQEIKEKYDP-NYHW---- 60
Query: 77 RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG 136
IG LQ NKV ++V L D+I+++ + A + + K + +PV ++VN E K+G
Sbjct: 61 HMIGHLQRNKVKDVVPLVDMIQSLDSLRLAEEIEKQCAKIEKVMPVLVEVNIAREANKTG 120
Query: 137 IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP----------KPHFYLLSEIARECKL 186
I+ + FV C L+V+GLMC+ P G + ++ L ++
Sbjct: 121 ILLEECLSFVKQCMSFPHLDVQGLMCVGPMNGTTADIEACFEKMQVLYHTLQNEYGAGRI 180
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM++D+ LA+ G+ +R+G+ IFG+R
Sbjct: 181 RYLSMGMSQDYALALKHGSNMIRLGTIIFGQR 212
>gi|114046770|ref|YP_737320.1| hypothetical protein Shewmr7_1264 [Shewanella sp. MR-7]
gi|113888212|gb|ABI42263.1| Protein of unknown function UPF0001 [Shewanella sp. MR-7]
Length = 238
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 113/226 (50%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L V + +I +A R S+ L+AVSK + I A GQ F EN +QE
Sbjct: 3 TIADRLAVAQCRIAQAAQKCARLPHSIRLLAVSKTKPIEDIIAAYDAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L+ D++ FIG LQSNK + + FD + T+SREK A L+ + Q L
Sbjct: 63 VTKIETLKSTHPDIEWHFIGPLQSNKTALVAQHFDWMHTLSREKIAQRLNEQRPAQLAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQ+N E KSGI Q Q L + GLM IP A + LSE+
Sbjct: 123 NVCIQINISDEDTKSGIDAEQMLPLAHSISQLPHLQLRGLMAIPSATNDTAQQSRELSEL 182
Query: 181 ARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K LSMGM+ D ++AI G+T VRIGS IFGER
Sbjct: 183 KQLFDTLKQHYPAVDTLSMGMSNDLDVAIECGSTMVRIGSAIFGER 228
>gi|332991906|gb|AEF01961.1| alanine racemase domain-containing protein [Alteromonas sp. SN2]
Length = 228
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 113/227 (49%), Gaps = 12/227 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L +Q + + A RP +SV L+AVSK I A GQ F EN +QE
Sbjct: 3 TIAERLNSARQDVSLATANANRPPNSVKLLAVSKTKPVSDIMAAYEEGQRTFGENYIQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D++ IG +QSNK + FD +++V REK A L+ + + L
Sbjct: 63 VDKIQQLSALSDIEWHMIGPIQSNKTKIVAENFDWVQSVDREKIARRLNDQRPAEMAPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH-----FYL 176
V IQVN E KSG+ P + V ++ +L + GLM IP A NP H
Sbjct: 123 VCIQVNIDDEASKSGVKPEDVDELVRFITKQDKLCLRGLMAIPKA--NPDSHEQAQSLSA 180
Query: 177 LSEI--ARECKLTK---LSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E+ LT LS+GM+ D + AIA G+T VRIG+ IFG R
Sbjct: 181 LKELFDRYHTNLTNFDTLSVGMSSDMQSAIAHGSTMVRIGTAIFGAR 227
>gi|254524687|ref|ZP_05136742.1| pyridoxal phosphate enzyme, YggS family [Stenotrophomonas sp.
SKA14]
gi|219722278|gb|EED40803.1| pyridoxal phosphate enzyme, YggS family [Stenotrophomonas sp.
SKA14]
Length = 257
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 117/227 (51%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q+I ++ I A R SV L+ VSK VD +IR+A++ G ENK+QEA+
Sbjct: 17 IAANLATVRQRIADACIRAGRDPASVRLLPVSKTVDDARIRMAVAAGCHELGENKVQEAQ 76
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + + V IG LQ+NK + + + + A L + + R L V
Sbjct: 77 RKAEAM-ADLGVHWSVIGHLQTNKARYVARFASEFQALDSLRVAETLQQRLQLEDRTLDV 135
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSE 179
++QVNT E K G+ P+ +DFV +L V GLM + P + + F L +
Sbjct: 136 FVQVNTSAEPSKYGLEPDAVEDFVQQLPAFDRLRVRGLMTLAVFTPEVERVRACFVRLRQ 195
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + L++LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 196 LRDQLQHSAPAGIDLSQLSMGMSGDFEVAIEEGATVVRVGQAIFGAR 242
>gi|330951376|gb|EGH51636.1| hypothetical protein PSYCIT7_08289 [Pseudomonas syringae Cit 7]
Length = 228
Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 109/224 (48%), Gaps = 10/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A+R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAAERDPASVGLLAVSKTKPASDLREAYTAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + L D+ L FIG +QSNK I FD + +V R K A LS + +
Sbjct: 63 LGKQLELS---DLPLCWHFIGPIQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN E KSG P +L + GLM IP +P +
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLPALAAAISALPRLRLRGLMAIPEPTDDPAAQNASFAA 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D E A+A GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLHLPLDTLSMGMSHDLEAAVAQGATWVRIGTALFGAR 223
>gi|294495605|ref|YP_003542098.1| alanine racemase [Methanohalophilus mahii DSM 5219]
gi|292666604|gb|ADE36453.1| alanine racemase domain protein [Methanohalophilus mahii DSM 5219]
Length = 216
Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 108/200 (54%), Gaps = 13/200 (6%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
+LV V+K ++ ++I A+ G I EN++QE + K K + IG LQ+NKV
Sbjct: 18 TLVCVTKTIEPERINEAIRAGATIIGENRVQEYEDKS---EKILPCETHLIGHLQTNKVK 74
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
V FDVI++V K + + + V++QVN G E QK G ++ K+ +
Sbjct: 75 RAVEYFDVIQSVDSLKVINNIDTRAGDIDKVQRVFLQVNIGNEPQKHGFRLDRIKEVINE 134
Query: 149 CRQKYQLNVEGLMCIPPAM--GNPKPHFY----LLSEIARE----CKLTKLSMGMTRDFE 198
R + VEGLMCIPP + +P+F L E+ +E + +LSMGM+ D+
Sbjct: 135 IRSLQNIRVEGLMCIPPFVPAEQTRPYFQKMKALFDEMKQENGGNIDIQELSMGMSNDYM 194
Query: 199 LAIASGATSVRIGSGIFGER 218
+AI GAT VR+GS IFGER
Sbjct: 195 VAIEEGATMVRVGSAIFGER 214
>gi|39997639|ref|NP_953590.1| hypothetical protein GSU2544 [Geobacter sulfurreducens PCA]
gi|39984531|gb|AAR35917.1| conserved hypothetical protein TIGR00044 [Geobacter sulfurreducens
PCA]
gi|298506579|gb|ADI85302.1| pyridoxal phosphate-dependent enzyme, class III [Geobacter
sulfurreducens KN400]
Length = 231
Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 103/203 (50%), Gaps = 13/203 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SV LVAVSK + ++ + A GQ +F EN +QE K +R V+ FIG LQSNK
Sbjct: 27 SVRLVAVSKTIPAEAVEDAARAGQRLFGENYVQEFTAKAREVRDP--VEWHFIGHLQSNK 84
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V + L I +V R A + + K + +QVN E KSG ++ D V
Sbjct: 85 VKYLAGLVTCIHSVDRLSLAEEIDRQWAKLDAVCDILVQVNIADEETKSGTSASELTDLV 144
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAREC--------KLTKLSMGMTR 195
+ V GLM +PP +P +P+F L +A +T+LSMGM+
Sbjct: 145 AAMATLPHVRVRGLMTMPPFFDDPEEARPYFRELRRLADAVAAENIPGISMTELSMGMSG 204
Query: 196 DFELAIASGATSVRIGSGIFGER 218
DFE A+ GAT VRIG+ +FGER
Sbjct: 205 DFEAAVEEGATLVRIGTALFGER 227
>gi|78044191|ref|YP_360862.1| hypothetical protein CHY_2043 [Carboxydothermus hydrogenoformans
Z-2901]
gi|77996306|gb|ABB15205.1| conserved hypothetical protein TIGR00044 [Carboxydothermus
hydrogenoformans Z-2901]
Length = 224
Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 124/232 (53%), Gaps = 24/232 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAK-RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M + KLQ K++I AK RP V ++ V+K VD ++I+ A G F ENK+Q
Sbjct: 1 MEISQKLQEVKREI------AKIRPGSKVKILGVTKTVDVERIKEASKAGVEAFGENKVQ 54
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E +K+ L EW FIG LQ+NK+++I+ +I ++ R A ++ +
Sbjct: 55 EFLEKYEKLPNLEW----HFIGHLQTNKINKILGKVVLIHSLDRYNLAEEINKRAYRLGI 110
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ-LNVEGLMCIPPAMGNP---KPHF 174
+PV ++VN E K G+MP + +DF R+ ++ L V GLM + P + NP +P F
Sbjct: 111 NVPVLLEVNMAKEETKFGLMPEEVEDFYFEVRENFKNLEVSGLMTVAPYVENPEEVRPVF 170
Query: 175 YLLSEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ E+ K LSMGM+ D+++A+ GA +R+G+ +FGER
Sbjct: 171 RAMRELFLKLKAKDPENDKFQYLSMGMSNDYKVAVEEGANIIRLGTLLFGER 222
>gi|146296912|ref|YP_001180683.1| alanine racemase domain-containing protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410488|gb|ABP67492.1| alanine racemase domain protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 233
Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 123/230 (53%), Gaps = 18/230 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++ +++IE + + + R V L+ +K VD IR+A G IF EN++QE
Sbjct: 7 LKKNIEEIQERIEKACLRSGRKSSEVKLLGATKGVDINTIRLANELGIKIFGENRVQEFL 66
Query: 63 KKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ L + EW FIG LQ+NK+ I +I ++ + + L K ++ +
Sbjct: 67 PKYNELPQLEW----HFIGRLQTNKIKYIYDKVLLIHSIEKVEQIQELEKRCSKAAKKID 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFV-ILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
V I+VN G E K G++P+ ++ + +C K+ +N++G M IPP + K +F +
Sbjct: 123 VLIEVNVGGEESKGGVLPDNVEELIENICECKH-VNLKGFMTIPPIEDDEKKLRQYFRKM 181
Query: 178 SEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
EI K+ LSMGM+ DFE+AI GAT VRIG+ +FGERP
Sbjct: 182 KEIFENYKKLNYNNVKIEVLSMGMSNDFEVAIEEGATLVRIGTKLFGERP 231
>gi|94311869|ref|YP_585079.1| hypothetical protein Rmet_2937 [Cupriavidus metallidurans CH34]
gi|93355721|gb|ABF09810.1| conserved protein of unknown function UPF0001 [Cupriavidus
metallidurans CH34]
Length = 229
Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 106/229 (46%), Gaps = 17/229 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ LQ K I +A A R V+L+AVSK V ++R A GQ F EN +QE
Sbjct: 4 IAANLQAVKNDIAAAAQQASRDPSGVTLLAVSKTVSPDRVREAFEAGQPAFGENYVQEGL 63
Query: 63 KKWIPL-----RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K L R W FIG LQSNK + FD + + R K A LS +
Sbjct: 64 DKIAALGDLRSRIAW----HFIGPLQSNKTRPVAEQFDWVHAIDRLKIAERLSAQRPADL 119
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PA--MGNPKPHF 174
L V IQVN E KSG++P + L + GLM IP PA + + F
Sbjct: 120 APLQVCIQVNISNEDTKSGVLPEEVLALARAVAALPNLRLRGLMAIPAPAADLAAQRVPF 179
Query: 175 YLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + E + + LSMGM+ D AIA GAT VRIG+ IFG R
Sbjct: 180 AALRRLLEELRQSGLDVDTLSMGMSADMPAAIAEGATMVRIGTAIFGAR 228
>gi|189347291|ref|YP_001943820.1| alanine racemase domain protein [Chlorobium limicola DSM 245]
gi|189341438|gb|ACD90841.1| alanine racemase domain protein [Chlorobium limicola DSM 245]
Length = 229
Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 122/235 (51%), Gaps = 26/235 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ L +Q+I ++ + A+R +V+L+AVSK + +IR A GQ+ F E+ +QE
Sbjct: 3 SITENLDAIRQRIAHACLKARRDPATVTLLAVSKTKSASRIREAFDAGQIDFGESYMQEF 62
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ PL + ++ FIG LQSNKV I+ +I + + TA LS ++Q+
Sbjct: 63 LDKESDPLLENQPIRWHFIGHLQSNKVRSIIGKVVLIHGIDKLSTAEELSGRAVRQNLQA 122
Query: 121 PVYIQVNTGYEIQKSGIMPN----QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
++VNT E K G+ P Q F +L + GLM I +P P
Sbjct: 123 DYLLEVNTSGEASKYGLKPEELLRQAPSFFMLP----NCTLRGLMTI----ASPDPALAR 174
Query: 173 -HFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F LS + + K LT+LSMGM++DFE AIA GAT +R+G+ IFG R
Sbjct: 175 YEFRSLSRLLDDLKKIAPDPSTLTELSMGMSQDFEAAIAEGATLIRVGTAIFGWR 229
>gi|66043744|ref|YP_233585.1| hypothetical protein Psyr_0477 [Pseudomonas syringae pv. syringae
B728a]
gi|63254451|gb|AAY35547.1| Protein of unknown function UPF0001 [Pseudomonas syringae pv.
syringae B728a]
Length = 228
Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 111/224 (49%), Gaps = 10/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A+R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAAERDPASVGLLAVSKTKPASDLREAYNAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + L D+ L FIG +QSNK I FD + +V R K A LS + +
Sbjct: 63 LGKQLELS---DLPLCWHFIGPIQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L + IQVN E KSG P +L + GLM IP +P F
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLPALAATIIALPRLRLRGLMAIPEPTDDPAAQDASFAA 179
Query: 177 LSEIARECKLT--KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRALQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGAR 223
>gi|220931765|ref|YP_002508673.1| conserved hypothetical protein TIGR00044 [Halothermothrix orenii H
168]
gi|219993075|gb|ACL69678.1| conserved hypothetical protein TIGR00044 [Halothermothrix orenii H
168]
Length = 230
Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 125/227 (55%), Gaps = 14/227 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L +L+ ++I+++ + R KD V L+ VSK +KI+ G IF E+++QE
Sbjct: 5 DLQTRLEEINKRIDDATRRSGR-KDKVKLLPVSKGQSPEKIKYFQRQGFTIFGESRVQEL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD--VIETVSREKTASLLSLEMIKQSRF 119
++K L V+ FIG LQ NKV ++ + + +I ++ + A + K +R
Sbjct: 64 REKDEKLD---GVEWHFIGHLQRNKVKYLMRMENCTLIHSLDSWRLARTIDKRARKNNRK 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+PV +QVN + K GI P++ KDFV + + VEGLM I P NP +P+F
Sbjct: 121 IPVLVQVNVARDPNKFGIEPSEVKDFVYEVSKLENIRVEGLMTIVPYSENPEEARPYFKQ 180
Query: 177 LSEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + + + +LSMGM+ DFE+AI GAT +RIG+ +FGER
Sbjct: 181 MNNLKNMLCDKGFNVKELSMGMSNDFEVAIEEGATIIRIGTKLFGER 227
>gi|313673061|ref|YP_004051172.1| alanine racemase domain protein [Calditerrivibrio nitroreducens DSM
19672]
gi|312939817|gb|ADR19009.1| alanine racemase domain protein [Calditerrivibrio nitroreducens DSM
19672]
Length = 229
Score = 117 bits (294), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 118/234 (50%), Gaps = 25/234 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+G++++ +K+ +A+ + R D ++LVAVSK ++I A G IF E++LQEA
Sbjct: 2 IGDRIRYITEKMHRAAVKSGRRLDDITLVAVSKTFPVERIIDAYRYGLRIFGESRLQEAS 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ D++ IG +Q+NK+ + F +I +V A ++ R +
Sbjct: 62 GKIEHLKSFPDIKFHMIGHVQTNKIRMLKDYFSLIHSVDSLHLAEKMNSYFYSIHRVQDI 121
Query: 123 YIQVNTGYEIQKSGI-------MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KP 172
IQVN E QK G+ M + KDF C L V GLM IPP +P +
Sbjct: 122 LIQVNLVNEPQKYGVKIEEFDEMMEKMKDFT--C-----LRVRGLMFIPPFYDDPEMNRD 174
Query: 173 HFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+F + + E + LSMGM+ DFE+AI GA VRIGS IFGER
Sbjct: 175 NFRKMKALFDETREKYRKFKEFDILSMGMSDDFEIAIEEGANMVRIGSAIFGER 228
>gi|300313097|ref|YP_003777189.1| enzyme with a TIM-barrel fold protein [Herbaspirillum seropedicae
SmR1]
gi|300075882|gb|ADJ65281.1| enzyme with a TIM-barrel fold protein [Herbaspirillum seropedicae
SmR1]
Length = 233
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 119/228 (52%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ LQ +Q+I +A A RP +V L+AVSK + + A+ GQ F EN LQEA
Sbjct: 3 SIAQNLQHVQQQIAAAAERAGRPAGAVQLLAVSKTFGPQAVLEAVRAGQRAFGENYLQEA 62
Query: 62 KKK--WIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K +PL + +Q FIG +QSNK I FD + +V R K A LS +
Sbjct: 63 LEKIAALPLLAPDVPLQWHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSEQRPAALG 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PA--MGNPKPHFY 175
L V +QVN E KSG+ P + Q L + GLM IP P+ + + F
Sbjct: 123 ALNVCLQVNISGEDSKSGLDPAELPAVAAQVAQLPGLKLRGLMAIPAPSEDVTQQRAAFA 182
Query: 176 ----LLSEI-ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL+++ A+ L LSMGM+ D + A+A GA+ VRIGS IFG R
Sbjct: 183 AVRSLLAQLQAQGLALDTLSMGMSADLDAAVAEGASIVRIGSAIFGAR 230
>gi|255280917|ref|ZP_05345472.1| pyridoxal phosphate enzyme, YggS family [Bryantella formatexigens
DSM 14469]
gi|255268365|gb|EET61570.1| pyridoxal phosphate enzyme, YggS family [Bryantella formatexigens
DSM 14469]
Length = 229
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/222 (36%), Positives = 116/222 (52%), Gaps = 13/222 (5%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+ +I+ + A R V+L+AVSK I L G + F ENK QE K+K+ L K
Sbjct: 10 RGRIDEACRRAGRDPREVTLIAVSKTKPVSMIEELLPEGVLDFGENKPQELKEKYEVLPK 69
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
+++ IG LQ NKV ++S +I +V + A + E K +PV ++VN
Sbjct: 70 --NLRFHMIGHLQRNKVKYVISRACMIHSVDSLRLAETIQEEAAKHQLIMPVLVEVNIAQ 127
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECK-- 185
E K G+ +T DFV + L V+GLM I P + NP+ HF L + + K
Sbjct: 128 EESKFGLSAAETPDFVRELSRFPNLCVKGLMTIAPFVENPEDNRVHFRNLYNLFIDIKAR 187
Query: 186 ------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGMT D+E+A+ GAT VR+G+GIFGER Q
Sbjct: 188 NIDNVDMCILSMGMTNDYEVAVEEGATHVRVGTGIFGERNYQ 229
>gi|255035572|ref|YP_003086193.1| alanine racemase domain-containing protein [Dyadobacter fermentans
DSM 18053]
gi|254948328|gb|ACT93028.1| alanine racemase domain protein [Dyadobacter fermentans DSM 18053]
Length = 246
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 110/208 (52%), Gaps = 13/208 (6%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
RP DSV L+ +K V + +IR AL GQ + ENK+QE + K+ L + Q FIG L
Sbjct: 25 RPADSVKLLLATKTVPADRIRHALLAGQTLIGENKVQEIRDKYEAL-SDIPHQTHFIGHL 83
Query: 83 QSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
Q+NK+ +++ I++V R + A L + + R + V+IQVNT +E K G+ P
Sbjct: 84 QTNKIKDVLKYNVSCIQSVDRLELAEKLEQRLAFEGRHMDVFIQVNTSFEGSKFGVAPEA 143
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE--------CKLTKLS 190
D V L+++GLM I + + F LL I + + +LS
Sbjct: 144 ALDLVRQVACCGHLHIKGLMTIGLFSADNEQVRKCFRLLKSIQSQIISENIPGVGMAELS 203
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGM+ D E AI GAT VR+G+ IFGER
Sbjct: 204 MGMSGDLETAIQEGATIVRVGTAIFGER 231
>gi|332702329|ref|ZP_08422417.1| protein of unknown function UPF0001 [Desulfovibrio africanus str.
Walvis Bay]
gi|332552478|gb|EGJ49522.1| protein of unknown function UPF0001 [Desulfovibrio africanus str.
Walvis Bay]
Length = 238
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 113/227 (49%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ L L+ ++ +A R V+LVAVSK ++ +R GQ+ F E+ +QE
Sbjct: 11 LELRRNLEAVLAEVNEAAAACGRKSGEVTLVAVSKFHPAQDVRALAGFGQMDFGESYVQE 70
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L ++ D++ FIG LQ+NK + F ++ +V K A L
Sbjct: 71 ALVKREEL-QDLDLRWHFIGRLQTNKARHVAGSFSLVHSVDSLKLAQTLHKRAQALQTLQ 129
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V +QVN E QK+G ++ + R L + GLM +PP + P +P F L
Sbjct: 130 EVLLQVNLAGEGQKAGAAADEARRLAQEVRGLDSLALRGLMLLPPMVDEPEQARPWFAAL 189
Query: 178 SE----IARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E + RE +L LSMGMT DF AIA GAT VRIG+ IFGER
Sbjct: 190 RELRDSLERELGVRLPHLSMGMTGDFRQAIAEGATIVRIGTRIFGER 236
>gi|33594951|ref|NP_882594.1| hypothetical protein BPP0235 [Bordetella parapertussis 12822]
gi|33565027|emb|CAE39976.1| conserved hypothetical protein [Bordetella parapertussis]
Length = 256
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 123/232 (53%), Gaps = 16/232 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++L + +I+ + + RP +SV+L+ VSK + IR A + G F ENK QE
Sbjct: 25 SMPHRLAAIQARIKAACERSARPPESVALLPVSKTFPVEAIRHAAALGLRRFGENKTQEI 84
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K P + D+Q IG LQ+NK ++ ++++ R + A L + ++R L
Sbjct: 85 RHK-APELADLDLQWVMIGHLQTNKAKDVARDVAEVQSLDRLELADALQRRLEMEARSLD 143
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFV-ILCRQKYQLNVEGLMCIPPAMGNPKPH-----FY 175
V +QV T E+ K G+ P F+ L L V+GLM + A+ + P F
Sbjct: 144 VLVQVKTSPELSKYGLAPELLPGFLRTLVSDFPALRVQGLMTM--AVNDEDPQAVRACFR 201
Query: 176 LLSEI---AREC----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LL E+ AR+ L +LSMGM+ DFE+AI G+T +RIGS +FG RP
Sbjct: 202 LLRELRDRARDSVPGVALDRLSMGMSGDFEIAIEEGSTEIRIGSALFGARPA 253
>gi|325971292|ref|YP_004247483.1| hypothetical protein SpiBuddy_1464 [Spirochaeta sp. Buddy]
gi|324026530|gb|ADY13289.1| protein of unknown function UPF0001 [Spirochaeta sp. Buddy]
Length = 228
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 121/220 (55%), Gaps = 17/220 (7%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I +A LA R + + L+AVSK I+ CGQ++F EN++QE ++K+ LR
Sbjct: 14 EIGQAATLAGRKPEDIKLMAVSKTHPFSAIQELYGCGQLVFGENRVQEVEQKFPSLRPSL 73
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
+Q+ IG LQ+NK + + LFD I++V K A LE + + + + + +++ T E
Sbjct: 74 -MQVHLIGHLQTNKAKKALELFDGIDSVDSLKLAQ--KLEALAE-KPVSILLELRTAPEE 129
Query: 133 QKSGIMPNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEIARECKL- 186
KSG N+T+ F L + V+GLM I P GN K F LL E A K+
Sbjct: 130 TKSGF-ENETELFRALDVLSTFSNVRVKGLMTIGPLHGNEKEIREAFSLLRETAERAKVR 188
Query: 187 ------TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGM+ DF LAIA G+T +R+GS +FG+R
Sbjct: 189 FSHLDFSTLSMGMSSDFRLAIAEGSTQIRVGSRLFGKREA 228
>gi|149917541|ref|ZP_01906038.1| hypothetical protein PPSIR1_25521 [Plesiocystis pacifica SIR-1]
gi|149821604|gb|EDM81002.1| hypothetical protein PPSIR1_25521 [Plesiocystis pacifica SIR-1]
Length = 226
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 118/235 (50%), Gaps = 27/235 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ +L ++++ + + A+R V LVAVSK ++ + A GQ F EN QE
Sbjct: 1 MNTAQRLLAIRERLHAACLAAERDPSQVHLVAVSKTFPAEALDPAYELGQRHFGENYAQE 60
Query: 61 AKKKWIPLRKEW----DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ K R E D+ FIG LQSNK+ I + V + A L+
Sbjct: 61 LRDK--AERFEGLGVTDLSWHFIGRLQSNKIKHIAPRARYVHAVEKRSHAEALAKHATGP 118
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL-----MCIPPAMGNPK 171
L +++ VN G E K G++P + +L R + VEGL MC+PP +P+
Sbjct: 119 ---LSIFLSVNIGEEASKGGVLPTE-----VLARAEELDAVEGLDLCGLMCMPPRCEDPE 170
Query: 172 ---PHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P+F ++E+A + L +LSMGM+ DF +A+ GAT VR+GS IFG+R
Sbjct: 171 DAAPYFARMAELAEAGRAHGLQLRELSMGMSHDFHVAVRYGATFVRVGSAIFGKR 225
>gi|119899756|ref|YP_934969.1| hypothetical protein azo3467 [Azoarcus sp. BH72]
gi|119672169|emb|CAL96083.1| conserved hypothetical protein [Azoarcus sp. BH72]
Length = 237
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 112/229 (48%), Gaps = 15/229 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ LQ ++I ++A A R +V L+AVSK ++ +R A + GQ F EN +QEA
Sbjct: 3 SISANLQAVSERIRDAARAAGRDPAAVRLLAVSKTWPAQSVREAAAAGQRAFGENYVQEA 62
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + EW FIG LQSNK + F + ++ R K A LS +
Sbjct: 63 LAKLAEVDDPALEW----HFIGPLQSNKTRAVAQHFAWVHSIDRLKLAERLSAQRDVHLP 118
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFY 175
L V +QVN E KSG+ P++ +L + GLMCIP + + F
Sbjct: 119 PLNVCLQVNVSGEDSKSGVAPDEVLPLARGVAALPRLVLRGLMCIPEPTDDVTLQRRRFA 178
Query: 176 LLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L + A L LSMGM+ D E A+A GAT VR+G+ IFG RP
Sbjct: 179 TLRGLRDTLAAEGIVLDTLSMGMSHDLEAAVAEGATLVRVGTAIFGARP 227
>gi|212636422|ref|YP_002312947.1| hypothetical protein swp_3673 [Shewanella piezotolerans WP3]
gi|212557906|gb|ACJ30360.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
Length = 214
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 111/200 (55%), Gaps = 15/200 (7%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVSE 89
+AVSK +++I A + GQ F EN +QE ++K L +++ D++ FIG LQSNK
Sbjct: 1 MAVSKTKPNEQIIEAYTAGQRRFGENYVQEGEEKVKSLSQDYPDIEWHFIGPLQSNKTKI 60
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
I LFD + TV REK AS L+ + + L V IQVN E KSG+ T + L
Sbjct: 61 IAGLFDWMHTVEREKIASRLNDQRPEHMSPLNVCIQVNISQEASKSGVT---TAEIAALA 117
Query: 150 RQKY---QLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--------LTKLSMGMTRDFE 198
+ + LN+ GLM IP A + L+E+ ++ + + LS+GM+ D E
Sbjct: 118 EKIHLLPNLNLRGLMAIPSASVDNVTAIAELAELQKQYQRLSAKYPSVDTLSVGMSNDLE 177
Query: 199 LAIASGATSVRIGSGIFGER 218
LA+A G+T VRIGS IFG R
Sbjct: 178 LAVAHGSTMVRIGSAIFGAR 197
>gi|330984657|gb|EGH82760.1| hypothetical protein PLA107_06501 [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 228
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 107/224 (47%), Gaps = 10/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAANREPASVGLLAVSKTKPAGDLREAYTAGLRNFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + L D+ L FIG +QSNK I F + +V R K A LS + +
Sbjct: 63 LGKQLELS---DLPLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN E KSG P +L + GLM IP NP +
Sbjct: 120 LNICIQVNVSGEASKSGCSPQDLPALAAAIIALPRLKLRGLMAIPEPTDNPAAQHASFAA 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGAR 223
>gi|237747221|ref|ZP_04577701.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
gi|229378572|gb|EEO28663.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
Length = 239
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 115/228 (50%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + LQ +Q+I+++A +R +V L+AVSK + I A GQ F EN QEA
Sbjct: 3 TISDHLQEIRQRIQSAARTTERNPSTVHLLAVSKTQPTNAILEAADAGQKAFGENYEQEA 62
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + +R + ++ FIG +QSNK I FD + +V REK A LS +
Sbjct: 63 VSKILAIRASRPDLKLEWHFIGPIQSNKTRSIAEHFDWVHSVDREKIARRLSDQRPAALA 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-------K 171
L + +QVN E KSGI P +L + GLM IP +P K
Sbjct: 123 PLNICLQVNISGEASKSGIHPENLLGMAKTVSAMPRLKLRGLMAIPEPESSPDRQREPFK 182
Query: 172 PHFYLLSEIAREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +++ + + LSMGM+ D + AI GAT+VRIG+ IFG+R
Sbjct: 183 AMKVLFNQLRKAGYDVDTLSMGMSDDMDAAIEEGATTVRIGTAIFGKR 230
>gi|212704883|ref|ZP_03313011.1| hypothetical protein DESPIG_02950 [Desulfovibrio piger ATCC 29098]
gi|212671725|gb|EEB32208.1| hypothetical protein DESPIG_02950 [Desulfovibrio piger ATCC 29098]
Length = 241
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 117/234 (50%), Gaps = 19/234 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + +++ + A R + V L+AVSK+ ++ + + GQV F EN +QEA
Sbjct: 6 ALRERYHSVLERLGEAIARAGRKPEEVRLIAVSKLHPAEDVACVAAAGQVDFGENYVQEA 65
Query: 62 KKKWIPLRKE---WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K L + D++ IG +QS K +++ F ++ T+ K A L
Sbjct: 66 LQKRQDLVAQPQCRDIRWHMIGHVQSRKAAQVAGAFALVHTLDSVKLADALEKRAAALGV 125
Query: 119 FLPVYIQVNTGYEIQKSGIM----PNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPK 171
PV ++N G E QK+GIM P + + C L ++GLMC+PP A +
Sbjct: 126 VQPVLCEINVGEEPQKAGIMADALPELAEHVLAHCPH---LEMQGLMCLPPVFDAGEAAR 182
Query: 172 PHF---YLLSEIARE---CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P+F Y L E R L LSMGM+ DF A+A GAT VRIG+ IFG RP
Sbjct: 183 PYFARLYRLREDMRARTGLPLPHLSMGMSGDFAAAVAEGATLVRIGTDIFGPRP 236
>gi|302879877|ref|YP_003848441.1| alanine racemase domain-containing protein [Gallionella
capsiferriformans ES-2]
gi|302582666|gb|ADL56677.1| alanine racemase domain protein [Gallionella capsiferriformans
ES-2]
Length = 231
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 115/226 (50%), Gaps = 13/226 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + LQ + + +A+LA R D V+L+AVSK + +R A GQ FAE+ LQEA
Sbjct: 4 IASNLQAVRAAMAAAAVLADRTADEVTLLAVSKTFPATAVRSAFQAGQRRFAESYLQEAL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ FIG +QSNK I F + +V R K A LS + L
Sbjct: 64 DKIAAL-DDLGIEWHFIGPVQSNKTRPIAEHFCWVHSVDRLKIAERLSAQRPVSLPPLQC 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+QVN E KSG+ P++ I C QL GLM +P +P + F L
Sbjct: 123 CLQVNISDEDSKSGVRPDEVSQLAHEIACLPNLQLR--GLMAVPAPTDDPLVQRAAFARL 180
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + K L LSMGM+ DF AIA GAT VRIGS IFGER
Sbjct: 181 RELYLQLKSEGLPLDTLSMGMSHDFAAAIAEGATIVRIGSAIFGER 226
>gi|296161767|ref|ZP_06844569.1| alanine racemase domain protein [Burkholderia sp. Ch1-1]
gi|295887931|gb|EFG67747.1| alanine racemase domain protein [Burkholderia sp. Ch1-1]
Length = 232
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 111/223 (49%), Gaps = 9/223 (4%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L+ +Q+I +A +A R S+ L+AVSK ++ +R A GQ F EN +QEA K
Sbjct: 6 HNLEAVRQRIATAAHVAGRDTRSIHLLAVSKTFPAEDVRAAYGAGQRAFGENYVQEAITK 65
Query: 65 WIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
L ++ FIG LQSNK + FD + +V R K A LS + L V
Sbjct: 66 IEALADLRATIEWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDNLPPLNVC 125
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK----PHFYL--L 177
+QVN E KSG+ + +LN+ GLM IP G+ PH L L
Sbjct: 126 LQVNISGEASKSGVGIAEAAQVAQAIAALPKLNLRGLMAIPEPAGSIDEQRVPHRQLREL 185
Query: 178 SEIARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E R+ L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 186 FERLRDGGLALDTLSMGMSSDLEAAVLEGATIVRVGTAIFGAR 228
>gi|262172425|ref|ZP_06040103.1| hypothetical protein VII_003254 [Vibrio mimicus MB-451]
gi|261893501|gb|EEY39487.1| hypothetical protein VII_003254 [Vibrio mimicus MB-451]
Length = 236
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 114/228 (50%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRCFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L + L + GLM IP P + F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQRAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+E+ R+ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQRQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGER 230
>gi|312066549|ref|XP_003136323.1| hypothetical protein LOAG_00735 [Loa loa]
gi|307768518|gb|EFO27752.1| hypothetical protein LOAG_00735 [Loa loa]
Length = 265
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 127/237 (53%), Gaps = 20/237 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRP----KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
+L + LQ+ ++IEN++ A++ SL+AVSK S I+ GQ+ F EN
Sbjct: 24 ALVDNLQLVLRRIENASKKAEQSPYWRGQKPSLIAVSKTKSSSLIQCCYDAGQMKFGENY 83
Query: 58 LQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMI 114
+QE K L+ + ++Q FIG++QSNK++++ + ++ +ET+ +K +S+L E+
Sbjct: 84 IQELADKAKTLKSKCPNIQWHFIGTIQSNKIAKLAEINNLSCVETICNKKHSSILEKEIA 143
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGN---- 169
K +R L V +QVNT E QK G P + R L G M I N
Sbjct: 144 KHNRTLKVLVQVNTSKEKQKGGTTPEMAVELAEFIRVHCPSLKFSGFMTIGSFARNMSET 203
Query: 170 PKPHFYLLSEIARE-CKLTK-------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
P F L ++ + C+LT+ LSMGM+ DFE AI G+TSVRIG+ IFG R
Sbjct: 204 PNRDFIELFKVRKTFCELTEENEENFELSMGMSNDFEAAIMLGSTSVRIGNAIFGHR 260
>gi|113969537|ref|YP_733330.1| hypothetical protein Shewmr4_1193 [Shewanella sp. MR-4]
gi|113884221|gb|ABI38273.1| Protein of unknown function UPF0001 [Shewanella sp. MR-4]
Length = 238
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 112/226 (49%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L V + +I +A R S+ L+AVSK + I A GQ F EN +QE
Sbjct: 3 TIADRLAVAQSRIAQAAQKCARLPHSIRLLAVSKTKPIEDIIAAYDAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L+ D++ FIG LQSNK + + FD + T+SREK A L+ + L
Sbjct: 63 VTKIESLKGTHPDIEWHFIGPLQSNKTALVAQHFDWMHTLSREKIAQRLNEQRPAHLAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQ+N E KSGI Q Q L + GLM IP A + LSE+
Sbjct: 123 NVCIQINISDEDTKSGIDAEQMLPLADSISQLPHLQLRGLMAIPSATNDIAQQSRELSEL 182
Query: 181 ARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K LSMGM+ D ++AI G+T VRIGS IFGER
Sbjct: 183 KQLFDTLKQHYPAVDTLSMGMSNDLDVAIECGSTMVRIGSAIFGER 228
>gi|325680288|ref|ZP_08159848.1| pyridoxal phosphate enzyme, YggS family [Ruminococcus albus 8]
gi|324107997|gb|EGC02253.1| pyridoxal phosphate enzyme, YggS family [Ruminococcus albus 8]
Length = 246
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 123/229 (53%), Gaps = 18/229 (7%)
Query: 3 LGNKLQVFKQ---KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
GN L+ +K+ +EN+ + D+VS++AV+K V +KI A+S G + EN++Q
Sbjct: 18 FGNVLENYKRIIYNVENAKAKYRSADDNVSIMAVTKTVAPEKINFAISQGITLLGENRVQ 77
Query: 60 EAKKKWIPLRKEWD--VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E ++ + ++D Q+ IG LQ+NKV I++ +I++V K A ++ +K
Sbjct: 78 E----YLSKKDQYDKTAQVHMIGRLQTNKVKYIINEVAMIQSVDSIKLAKEINRLAVKND 133
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
R + V +++N G E KSG+ + + Q + ++GLM IPP +G + F +
Sbjct: 134 RVMDVLLEINIGDEASKSGVAAEGLDELIYEAAQLENVRIKGLMAIPP-VGCGEDMFDKM 192
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I K + LSMGM+ D+ELAI G+ VRIG+ +FG R
Sbjct: 193 HSIFLRVKEMAVPGVSMETLSMGMSGDYELAIKHGSNLVRIGTALFGAR 241
>gi|261856426|ref|YP_003263709.1| alanine racemase domain protein [Halothiobacillus neapolitanus c2]
gi|261836895|gb|ACX96662.1| alanine racemase domain protein [Halothiobacillus neapolitanus c2]
Length = 223
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 114/221 (51%), Gaps = 5/221 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
SL + K +IE ++ RP SV L+AVSK + + S GQ F E+ LQEA
Sbjct: 3 SLHERFSSIKNRIERASHAVGRPDGSVVLIAVSKRQTIEAMAQLASLGQRDFGESYLQEA 62
Query: 62 KKKWIPLRKE---WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K L + + FIG +QSNK I F + +V R K A L+ + +
Sbjct: 63 LDKQSALADQPVGASIVWHFIGPIQSNKTRGIAENFSWVHSVDRPKIAQRLNDQRPIELP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V I+VN E KSG++P Q V + + +L + GLM I PA G+ L +
Sbjct: 123 PLNVLIEVNIDGEASKSGVLPEQLPGMVDIFQNLPRLKLMGLMAI-PAPGSSDGFCRLAA 181
Query: 179 EIAR-ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
AR E L LSMGM+ DFE AIA+G+T VR+GS +FG R
Sbjct: 182 LNARLESPLPVLSMGMSDDFEAAIAAGSTHVRVGSALFGPR 222
>gi|258404223|ref|YP_003196965.1| alanine racemase domain-containing protein [Desulfohalobium
retbaense DSM 5692]
gi|257796450|gb|ACV67387.1| alanine racemase domain protein [Desulfohalobium retbaense DSM
5692]
Length = 235
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 107/204 (52%), Gaps = 16/204 (7%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV---QLRFIGSLQS 84
V+LVAVSK + I + GQ F EN +QEA K + + D+ Q FIG LQ
Sbjct: 32 VTLVAVSKYQPIEAIAAVHAAGQTHFGENYIQEALDK----QDQCDISPIQWHFIGHLQR 87
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK + FD++ TV + A +L + + + +QV+ E QK+G+ P ++
Sbjct: 88 NKAKFVPGRFDLVHTVDSVRLAQMLDKKAAEAGVVQAILLQVSLAGEEQKAGLAPEALEE 147
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK------LTKLSMGMTR 195
+ Q L ++G M +PP +P +P F L E+ E + L LSMGM+
Sbjct: 148 TLDTVGQLPHLQLQGFMTMPPYFNDPERVRPLFCRLRELRDEAQNQLGRELPHLSMGMSG 207
Query: 196 DFELAIASGATSVRIGSGIFGERP 219
DFE+AIA GAT VR+G+ IFG RP
Sbjct: 208 DFEVAIAEGATLVRVGTRIFGPRP 231
>gi|167623106|ref|YP_001673400.1| alanine racemase domain-containing protein [Shewanella halifaxensis
HAW-EB4]
gi|167353128|gb|ABZ75741.1| alanine racemase domain protein [Shewanella halifaxensis HAW-EB4]
Length = 233
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 120/226 (53%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + + +I +A + R + + L+AVSK + +I A GQ F EN +QE
Sbjct: 3 TITDRLAIAQHRIAQAAQNSSRRAEDIQLLAVSKTKPNSQIIEAYHAGQRRFGENYVQEG 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L +E+ D++ FIG LQSNK + +LFD + TV REK A L+ + + L
Sbjct: 63 ESKVNALSQEFPDIEWHFIGPLQSNKSKVVATLFDWMHTVEREKIAQRLNEQRPESMPAL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY----- 175
V IQVN E KSG+ + +L + GLM IP A +
Sbjct: 123 NVCIQVNISQEQSKSGVPACEVLALADKIALLPKLTLRGLMAIPSADVDELTAIQELAAL 182
Query: 176 --LLSEIA-RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +E+A R + LS+GM+ D ELA+A G+T VRIGS IFGER
Sbjct: 183 QSLYNELAQRFDSVDTLSVGMSNDLELAVAHGSTMVRIGSAIFGER 228
>gi|33599228|ref|NP_886788.1| hypothetical protein BB0239 [Bordetella bronchiseptica RB50]
gi|33575274|emb|CAE30737.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
Length = 250
Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 122/232 (52%), Gaps = 16/232 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++L + +I+ + + RP +SV+L+ VSK + IR A + G F ENK QE
Sbjct: 19 SMPHRLAAIQARIKAACERSARPPESVALLPVSKTFPVEAIRHAAALGLRRFGENKTQEI 78
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K P + D+Q IG LQ+NK ++ ++++ R + A L + ++R L
Sbjct: 79 RHK-APELADLDLQWVMIGHLQTNKAKDVARDVAEVQSLDRLELADALQRRLEMEARSLD 137
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFV-ILCRQKYQLNVEGLMCIPPAMGNPKPH-----FY 175
V +QV T E K G+ P F+ L L V+GLM + A+ + P F
Sbjct: 138 VLVQVKTSPEPSKYGLAPELLPGFLRTLVSDFPALRVQGLMTM--AVNDEDPQAVRACFR 195
Query: 176 LLSEI---AREC----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LL E+ AR+ L +LSMGM+ DFE+AI G+T +RIGS +FG RP
Sbjct: 196 LLRELRDRARDSVPGVALDRLSMGMSGDFEIAIEEGSTEIRIGSALFGARPA 247
>gi|156307500|ref|XP_001617643.1| hypothetical protein NEMVEDRAFT_v1g225918 [Nematostella vectensis]
gi|156194985|gb|EDO25543.1| predicted protein [Nematostella vectensis]
Length = 228
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 109/215 (50%), Gaps = 6/215 (2%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I +A ++R S+ L+AVSK ++ IR A + G F EN LQEA +K + L +
Sbjct: 14 RIREAAQASQRDCGSIGLLAVSKTKPAEAIRQAFAAGTRDFGENYLQEALEKQVEL-SDL 72
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
+ FIG +QSNK I F + +V R K A LS + L + +QVN E
Sbjct: 73 PLTWHFIGPIQSNKTKPIAEHFAWVHSVDRLKIAQRLSDQRPAHLPALNICLQVNVSGEA 132
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK--LT 187
KSG P++ Q L + GLM IP +P + F L E+ ++ L
Sbjct: 133 SKSGCNPDELPALAQAVTQLPNLCLRGLMTIPEPTDDPVEQRAAFARLRELQQDLNLDLD 192
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
LSMGM+ D E AIA GAT VRIG+ +FG R T
Sbjct: 193 TLSMGMSHDLEAAIAEGATWVRIGTALFGARDYST 227
>gi|330961171|gb|EGH61431.1| hypothetical protein PMA4326_21764 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 228
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 109/224 (48%), Gaps = 10/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A R S+ L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAADRDPASIGLLAVSKTKPASDLREAYTAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K L D+ L FIG +QSNK I F + +V R K A LS + +
Sbjct: 63 LAKQAELS---DLPLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEGLEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
L + IQVN E KSG P D +L + GLM IP +P F
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLSDLATAISALPRLKLRGLMAIPEPTDDPLEQTASFAA 179
Query: 177 LSEIARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQAQLGLPLDTLSMGMSHDLEAAIAQGATWVRIGTALFGAR 223
>gi|194290665|ref|YP_002006572.1| hypothetical protein RALTA_A2580 [Cupriavidus taiwanensis LMG
19424]
gi|193224500|emb|CAQ70511.1| Conserved hypothetical protein, UPF0001 family; putative racemase
[Cupriavidus taiwanensis LMG 19424]
Length = 229
Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 99/200 (49%), Gaps = 9/200 (4%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-EWDVQLRFIGSLQSNK 86
V+L+AVSK V +IR A + GQ+ F EN +QE K L +Q FIG LQSNK
Sbjct: 29 VALLAVSKTVSPDRIRAAYAAGQLAFGENYVQEGLDKIAALADLRGRLQWHFIGPLQSNK 88
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
+ FD + ++ R + A LS + L V IQVN E KSG+ P +
Sbjct: 89 TRPVAEHFDWVHSIERLRIAERLSAQRPAGMTPLQVCIQVNISGEASKSGVAPAEVPALA 148
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNP----KPHFYLLSEI----ARECKLTKLSMGMTRDFE 198
L + GLM IP +P +P + + + A L LSMGM+ D E
Sbjct: 149 HAVAALPGLRLRGLMAIPEPADDPAAQRRPFAAMRAMLQALRADGLDLDTLSMGMSGDME 208
Query: 199 LAIASGATSVRIGSGIFGER 218
AIA GAT VRIG+ IFG R
Sbjct: 209 AAIAEGATLVRIGTAIFGAR 228
>gi|289625048|ref|ZP_06458002.1| hypothetical protein PsyrpaN_07912 [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289647863|ref|ZP_06479206.1| hypothetical protein Psyrpa2_08942 [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330865795|gb|EGH00504.1| hypothetical protein PSYAE_00805 [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|331009665|gb|EGH89721.1| hypothetical protein PSYTB_08206 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 228
Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 107/224 (47%), Gaps = 10/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAANREPASVGLLAVSKTKPAGDLREAYTAGLRNFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + L D+ L FIG +QSNK I F + +V R K A LS + +
Sbjct: 63 LGKQLELS---DLPLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN E KSG P +L + GLM IP +P +
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLPALAAAIIALPRLKLRGLMAIPEPTDDPAAQHASFAA 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGAR 223
>gi|117919643|ref|YP_868835.1| hypothetical protein Shewana3_1194 [Shewanella sp. ANA-3]
gi|117611975|gb|ABK47429.1| Protein of unknown function UPF0001 [Shewanella sp. ANA-3]
Length = 238
Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 113/226 (50%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L V + +I +A R S+ L+AVSK + I A + GQ F EN +QE
Sbjct: 3 TIADRLAVAQSRIAQAAQKCARLPHSIRLLAVSKTKPMEDIIAAYNAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L+ D++ FIG LQSNK + + FD + T+SREK A L+ + L
Sbjct: 63 VTKIEALKATHPDIEWHFIGPLQSNKTALVAQHFDWMHTLSREKIAQRLNEQRPAHLAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQ+N E KSGI Q Q L + GLM IP A + LS++
Sbjct: 123 KVCIQINISDEYTKSGIDAEQMLPLADSISQLPHLQLRGLMAIPSATNDIAQQTDELSKL 182
Query: 181 ARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K LSMGM+ D ++A+ G+T VRIGS IFGER
Sbjct: 183 KQLFDTLKQHYPAVDTLSMGMSNDLDVAVECGSTMVRIGSAIFGER 228
>gi|330886255|gb|EGH20156.1| hypothetical protein PSYMO_01090 [Pseudomonas syringae pv. mori
str. 301020]
Length = 228
Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 107/224 (47%), Gaps = 10/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAANREPASVGLLAVSKTKPASDLREAYTAGLRNFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + L D+ L FIG +QSNK I F + +V R K A LS + +
Sbjct: 63 LGKQLELS---DLPLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN E KSG P +L + GLM IP +P +
Sbjct: 120 LNICIQVNVSDEASKSGCSPQDLPALAAAIIALPRLKLRGLMAIPEPTDDPAAQHASFAA 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGAR 223
>gi|197301725|ref|ZP_03166795.1| hypothetical protein RUMLAC_00451 [Ruminococcus lactaris ATCC
29176]
gi|197299165|gb|EDY33695.1| hypothetical protein RUMLAC_00451 [Ruminococcus lactaris ATCC
29176]
Length = 230
Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++LQ +++I+ + A R ++ V+L+AVSK + ++ A G IF ENK+QE
Sbjct: 2 LKDQLQEVEKRIQAACDRAGRKREEVTLIAVSKTKPVETLQEAYDLGVRIFGENKVQELT 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L K D+ IG LQ+NKV I+ ++I +V K A + E K +
Sbjct: 62 AKYEALPK--DIHWHMIGHLQTNKVKYIIDKAELIHSVDSLKLAETIEKEAAKHDLIADI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN E K G+ + FV + V GLM I P + +P+ + + +++ +
Sbjct: 120 LVEVNVAEEESKFGMKMEEVIPFVEKVSAFPHVRVRGLMTIAPFVEDPEENRSIFADLHK 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 180 LYIDIKKKNHDNDTVSVLSMGMTNDYEVAIEEGATMVRVGTGIFGAR 226
>gi|118595166|ref|ZP_01552513.1| hypothetical protein MB2181_05820 [Methylophilales bacterium
HTCC2181]
gi|118440944|gb|EAV47571.1| hypothetical protein MB2181_05820 [Methylophilales bacterium
HTCC2181]
Length = 221
Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 111/213 (52%), Gaps = 10/213 (4%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD 73
I N I + + + +VAVSK DS KI A+ GQ IF EN +QEA +K L+K ++
Sbjct: 10 ILNQQIESIKASNRTVIVAVSKKQDSSKIIEAIKSGQTIFGENYVQEALEKQEILKK-YN 68
Query: 74 VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ 133
++ FIG +QSNK I F ++TV R KTA ++ + + + V +Q+N E
Sbjct: 69 LEWHFIGPIQSNKCKAIAENFSWVQTVDRLKTAIRIN-DAREGMEPINVCLQINISSEDS 127
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLT--- 187
K G+M +D + LN+ GLM IP N K F LL E K T
Sbjct: 128 KGGVMLEAAEDLFKEVSKLKNLNIRGLMAIPSNTSNAHVLKKEFQLLKNAYDEFKKTYPS 187
Query: 188 --KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D+ AI GA +R+GS IFGER
Sbjct: 188 IDTLSMGMSNDYLEAIQQGANMIRVGSNIFGER 220
>gi|309790060|ref|ZP_07684634.1| alanine racemase domain protein [Oscillochloris trichoides DG6]
gi|308227915|gb|EFO81569.1| alanine racemase domain protein [Oscillochloris trichoides DG6]
Length = 246
Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 107/217 (49%), Gaps = 29/217 (13%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW-----IPLRKEWDVQLRFIGS 81
++LVAVSK +R A++ G F EN++QEA K +P R W IG
Sbjct: 34 DITLVAVSKTHSPDHVRAAVAAGCYTFGENRVQEAAPKIAALQDLPRRPRW----HMIGH 89
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPN 140
LQ NK V LFD+I++V + A L+ R +P+ +QVN E+ K G +P
Sbjct: 90 LQRNKARLAVELFDLIQSVDSLRLAESLNQHAHDLGRRVPILLQVNVSGEVSKEGFALPG 149
Query: 141 QTKDFVILCRQKYQ---------LNVEGLMCIPPAMGNP---KPHFYLLSEI----AR-- 182
+ + + L V GLM IPP P +P+F LL E+ AR
Sbjct: 150 GIANHAAYAQLSTEIERILTLPNLEVRGLMTIPPLAEEPEASRPYFRLLRELRTDLARRW 209
Query: 183 -ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ DFE+AI+ AT +R+G IFGER
Sbjct: 210 PQANWRDLSMGMSDDFEVAISEEATIIRLGRAIFGER 246
>gi|323524799|ref|YP_004226952.1| alanine racemase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323381801|gb|ADX53892.1| alanine racemase domain protein [Burkholderia sp. CCGE1001]
Length = 232
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 115/231 (49%), Gaps = 25/231 (10%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L+ +Q+I +A +A R S++L+AVSK ++ +R A + GQ F EN +QEA K
Sbjct: 6 HNLEAVQQRIAMAAHVAGRDARSIALLAVSKTFPAEDVRAAHAAGQRAFGENYVQEALTK 65
Query: 65 WIPLRK-----EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
L EW FIG LQSNK + FD + +V R K A LS +
Sbjct: 66 IEALADLRASLEW----HFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDALPP 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQ----TKDFVILCRQKYQLNVEGLMCIP-PAMGNPK--- 171
L V +QVN E KSG+ ++ +D L R L + GLM IP PA G +
Sbjct: 122 LNVCLQVNISGEASKSGVSVDEAMQVARDIAALPR----LRLRGLMAIPEPAGGIDEQRV 177
Query: 172 PHFYLLSEIAR----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
PH L R L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 178 PHRRLRELFERLRSDGLALDTLSMGMSSDLEAAVLEGATIVRVGTAIFGAR 228
>gi|170691371|ref|ZP_02882536.1| alanine racemase domain protein [Burkholderia graminis C4D1M]
gi|170143576|gb|EDT11739.1| alanine racemase domain protein [Burkholderia graminis C4D1M]
Length = 232
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 87/231 (37%), Positives = 118/231 (51%), Gaps = 25/231 (10%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L+ +Q+I +A +A R S++L+AVSK ++ +R A + GQ F EN +QEA K
Sbjct: 6 HNLEAVQQRIALAAHVAGRDARSIALLAVSKTFPAEDVRAAHAAGQRAFGENYVQEALTK 65
Query: 65 ---WIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
LR EW FIG LQSNK + FD + +V R K A LS + +
Sbjct: 66 IEVLADLRSTLEW----HFIGPLQSNKTRPVAEQFDWVHSVDRLKIAQRLSEQRPETLPP 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQ----TKDFVILCRQKYQLNVEGLMCIPPAMGNPK---- 171
L V +QVN E KSG+ ++ KD L R L + GLM IP G+
Sbjct: 122 LNVCLQVNISGEASKSGVGVDEAVQVAKDIAALPR----LRLRGLMAIPEPAGSIDDQRV 177
Query: 172 PHFYL--LSE--IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
PH L L E + +L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 178 PHRRLRELFERLVGEGLELDTLSMGMSSDLEAAVLEGATIVRVGTAIFGAR 228
>gi|226942470|ref|YP_002797543.1| alanine racemase domain-containing protein [Azotobacter vinelandii
DJ]
gi|226717397|gb|ACO76568.1| alanine racemase domain protein [Azotobacter vinelandii DJ]
Length = 234
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 105/217 (48%), Gaps = 10/217 (4%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+ +I +A + R +V L+AVSK + +R A +CGQ F EN LQEA K L
Sbjct: 12 RARIREAAQASGRDPQNVRLLAVSKTKPASVLREAFACGQRDFGENYLQEALAKQAEL-A 70
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
+ ++ FIG +QSNK I F + +V R K A LS + L + +QVN
Sbjct: 71 DLELTWHFIGPIQSNKTRAIAEHFAWVHSVDRAKIAQRLSEQRPAHLPPLNICLQVNVSG 130
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIARE---- 183
E KSG P + + + L + GLM IP +P F L E+
Sbjct: 131 EASKSGCEPEELAELAGAVAELPNLRLRGLMAIPEPSDDPAAQHAPFARLRELQESLGQH 190
Query: 184 --CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 191 LGLDLDTLSMGMSHDLEAAIAEGATWVRIGTALFGAR 227
>gi|298485009|ref|ZP_07003106.1| predicted pyridoxal phosphate-dependent enzyme [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|298160419|gb|EFI01443.1| predicted pyridoxal phosphate-dependent enzyme [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 228
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 108/224 (48%), Gaps = 10/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAANREPASVGLLAVSKTKPAGDLREAYTAGLRNFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + L D+ L FIG +QSNK I F + +V R K A LS + +
Sbjct: 63 LGKQLELS---DLPLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN E KSG P + +L + GLM IP +P +
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLPELAAAIIALPRLKLRGLMAIPEPTDDPAAQHASFAA 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGAR 223
>gi|311232396|gb|ADP85250.1| alanine racemase domain protein [Desulfovibrio vulgaris RCH1]
Length = 243
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 117/231 (50%), Gaps = 15/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + ++E + A R V+LVAVSK ++ + + GQ F EN +QEA
Sbjct: 11 LAERYAAVRHRLETAVRRAGRAPADVTLVAVSKYHPAEAVAAVAALGQRDFGENYVQEAL 70
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK-QSRFLP 121
+K L E D+ IG +QS K ++ F +I TV EK A L + + + P
Sbjct: 71 QKQEALAGE-DILWHCIGHVQSRKAKDVAGRFALIHTVDSEKLAHNLHKALWRPEDDTCP 129
Query: 122 V----YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHF 174
V +QVN G E+QKSGI +T Q L + GLMC+PP + +P F
Sbjct: 130 VVQDVLLQVNIGEEVQKSGIDAAETARLAETVLQLPTLRLCGLMCLPPFFDDGEAARPFF 189
Query: 175 YLLSEIARECKLT------KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L ++ + +L+ LSMGM+ DFE A+ GAT VR+G+ IFG RP
Sbjct: 190 AALRKLRDDLELSLGVPLPHLSMGMSGDFEQAVEEGATIVRVGTDIFGPRP 240
>gi|262197095|ref|YP_003268304.1| alanine racemase domain protein [Haliangium ochraceum DSM 14365]
gi|262080442|gb|ACY16411.1| alanine racemase domain protein [Haliangium ochraceum DSM 14365]
Length = 243
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 111/209 (53%), Gaps = 10/209 (4%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRF 78
A RP+D+ +VAVSK + + +A G V EN +QE K+ +P ++ F
Sbjct: 32 AGRPRDAADIVAVSKKHPAATLALAHRAGVVDVGENYVQEMLGKQDELPAEVAGALRWHF 91
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ NKV ++V +I V E A + +Q PV + VN G E QKSGI
Sbjct: 92 IGHLQRNKVKQVVGRAALIHAVDSEALAREIERRAGQQDVVQPVLVAVNLGEEAQKSGIA 151
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIAR----ECK-LTKLS 190
+ + L + L +GLM +PP + + +P+F L+ +AR E + L +LS
Sbjct: 152 RDALPALLALMDELPHLRCDGLMTMPPLAHSSEDSRPYFRALAALARELATEARPLARLS 211
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERP 219
MG T DFE+A+ GAT VR+G+ +FG RP
Sbjct: 212 MGTTGDFEVALEEGATLVRVGTAVFGPRP 240
>gi|329896504|ref|ZP_08271562.1| hypothetical protein IMCC3088_2174 [gamma proteobacterium IMCC3088]
gi|328921721|gb|EGG29094.1| hypothetical protein IMCC3088_2174 [gamma proteobacterium IMCC3088]
Length = 231
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 109/214 (50%), Gaps = 9/214 (4%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+IE +A LA R D ++L+AVSK ++ I A +CG F EN LQEA +K I E
Sbjct: 16 RIEGAASLASRRSDEITLIAVSKTKPAEAIEAAAACGLQHFGENYLQEALEK-IETLHEL 74
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
D+ FIG +QSNK I FD + +V R K A LS + L + +QVN E
Sbjct: 75 DLTWHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSDQRPAHLGPLNICLQVNISNED 134
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA--------REC 184
KSG+ +Q + + + G+M IP +P ++
Sbjct: 135 TKSGVSADQAPELAKAITTLPNIRLRGVMTIPKPSDDPAEQAAAFEKVVTLFNTLRHTNP 194
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+L LSMGM++D E AIA+G+T VRIG+ IFG R
Sbjct: 195 ELDILSMGMSQDLEAAIAAGSTMVRIGTDIFGAR 228
>gi|325263919|ref|ZP_08130652.1| pyridoxal phosphate enzyme, YggS family [Clostridium sp. D5]
gi|324030957|gb|EGB92239.1| pyridoxal phosphate enzyme, YggS family [Clostridium sp. D5]
Length = 232
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 121/227 (53%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ +QKI+ + A R ++ V+L+AVSK ++ A G IF ENK+QE
Sbjct: 2 LKEQLEEVEQKIQAACDRAGRKREEVTLIAVSKTKPIAVLQEAYDAGVRIFGENKVQELT 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L D+ IG LQ+NKV IV ++I +V K A ++ E K++ +
Sbjct: 62 DKYDALPD--DIHWHMIGHLQTNKVKYIVDKAELIHSVDSLKLAQVIEKEAEKKNCTARI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
I+VN E K G+ ++ F+ + V GLM I P + NP +P F L +
Sbjct: 120 LIEVNVAGEESKFGLNVDEVIPFIEKIASFKHIRVCGLMTIAPFVENPEENRPIFENLHK 179
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + K ++ LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 180 LSVDIKNKNIDNVNVSILSMGMTNDYEVAIEEGATMVRVGTGIFGAR 226
>gi|323704172|ref|ZP_08115751.1| alanine racemase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323536238|gb|EGB26010.1| alanine racemase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 233
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 12/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + K+ ++ A+ R D + +VAV+K VD +I A+ G ENK+QE
Sbjct: 1 MDIRYNIDKVKENVKKHALKVNRNPDDILIVAVTKTVDVSRIEEAIKYGITDIGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L + VQ FIG LQ+NKV ++ +I ++ + A + K +R +
Sbjct: 61 LVDKYPTLMDK--VQFHFIGHLQTNKVKYVIDKVKMIHSLDSVRLAEEIDKRAKKCNRIM 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG--NPKPHFYLLS 178
I+VN G E K GI P+ +F+ L ++GLM + P + + +P+F +
Sbjct: 119 DCLIEVNVGSEESKYGIEPSSLLEFIKELESFDNLKIKGLMTVAPYVDAEDVRPYFRKMK 178
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ K LSMGMT D+ +A+ GA +RIG+GIFG+R
Sbjct: 179 ELFDNTKSLNQKNLDFKYLSMGMTNDYTVAVEEGANIIRIGTGIFGKR 226
>gi|254489708|ref|ZP_05102904.1| conserved hypothetical protein TIGR00044 [Methylophaga thiooxidans
DMS010]
gi|224465117|gb|EEF81370.1| conserved hypothetical protein TIGR00044 [Methylophaga thiooxydans
DMS010]
Length = 231
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 109/206 (52%), Gaps = 9/206 (4%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R + +V L+AVSK ++K+R + GQ F EN LQEA K I + +++ FIG
Sbjct: 22 ANRAEKAVQLLAVSKTWPAEKLRTVAALGQTRFGENYLQEALDK-IHALADLELEWHFIG 80
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK +I + FD +TV R K A L+ + +Q L V IQVN E KSG+
Sbjct: 81 PIQSNKTRDIATFFDWAQTVDRLKVAKRLNDQRPQQLPPLNVCIQVNIDNEDSKSGVSVE 140
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH-------FYLLSEIARECK-LTKLSMG 192
+ + +Q +L + GLM IP N F L + + + LSMG
Sbjct: 141 EIQPLAEAIQQFDKLKLRGLMIIPARHDNETAQAETFRRAFELYQSLQSQFDGIDTLSMG 200
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
MT D +LAI G+T VRIG+ +FG+R
Sbjct: 201 MTADRQLAIQHGSTMVRIGTALFGQR 226
>gi|120603948|ref|YP_968348.1| alanine racemase [Desulfovibrio vulgaris DP4]
gi|304569675|ref|YP_009276.2| hypothetical protein DVU0051 [Desulfovibrio vulgaris str.
Hildenborough]
gi|120564177|gb|ABM29921.1| alanine racemase domain protein [Desulfovibrio vulgaris DP4]
Length = 242
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 117/231 (50%), Gaps = 15/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + ++E + A R V+LVAVSK ++ + + GQ F EN +QEA
Sbjct: 10 LAERYAAVRHRLETAVRRAGRAPADVTLVAVSKYHPAEAVAAVAALGQRDFGENYVQEAL 69
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK-QSRFLP 121
+K L E D+ IG +QS K ++ F +I TV EK A L + + + P
Sbjct: 70 QKQEALAGE-DILWHCIGHVQSRKAKDVAGRFALIHTVDSEKLAHNLHKALWRPEDDTCP 128
Query: 122 V----YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHF 174
V +QVN G E+QKSGI +T Q L + GLMC+PP + +P F
Sbjct: 129 VVQDVLLQVNIGEEVQKSGIDAAETARLAETVLQLPTLRLCGLMCLPPFFDDGEAARPFF 188
Query: 175 YLLSEIARECKLT------KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L ++ + +L+ LSMGM+ DFE A+ GAT VR+G+ IFG RP
Sbjct: 189 AALRKLRDDLELSLGVPLPHLSMGMSGDFEQAVEEGATIVRVGTDIFGPRP 239
>gi|213971473|ref|ZP_03399585.1| conserved hypothetical protein TIGR00044 [Pseudomonas syringae pv.
tomato T1]
gi|301383500|ref|ZP_07231918.1| hypothetical protein PsyrptM_12746 [Pseudomonas syringae pv. tomato
Max13]
gi|302062924|ref|ZP_07254465.1| hypothetical protein PsyrptK_23299 [Pseudomonas syringae pv. tomato
K40]
gi|302134692|ref|ZP_07260682.1| hypothetical protein PsyrptN_25079 [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213923755|gb|EEB57338.1| conserved hypothetical protein TIGR00044 [Pseudomonas syringae pv.
tomato T1]
Length = 228
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 108/224 (48%), Gaps = 10/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ AKR SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAAKRDPASVGLLAVSKTKPASDLREAYTAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + L D+ L FIG +QSNK I F + +V R K A LS + +
Sbjct: 63 LGKQLELA---DLPLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEGLEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN E KSG P +L + GLM IP +P +
Sbjct: 120 LNICIQVNVSGEASKSGCAPQDLPALAAAINALPRLKLRGLMAIPEPTDDPAAQAASFAA 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLNLSLDTLSMGMSHDLEAAIAQGATWVRIGTALFGAR 223
>gi|126666565|ref|ZP_01737543.1| hypothetical protein MELB17_20686 [Marinobacter sp. ELB17]
gi|126628953|gb|EAZ99572.1| hypothetical protein MELB17_20686 [Marinobacter sp. ELB17]
Length = 234
Score = 115 bits (287), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 114/232 (49%), Gaps = 19/232 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + + Q+IE + + A R SV L+AVSK + ++R A++ GQ F EN LQEA
Sbjct: 3 SIADNINSVTQRIEKATLQAGRKPHSVRLLAVSKTRQADELREAVAAGQQDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L+ +++ FIG +QSNK ++I S F + V R K A L+ + L
Sbjct: 63 LDKIANLQDIPELRWHFIGPIQSNKTAQIASAFCWVHGVERLKIARRLNDQRDTALPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QVN E KSG N+ + QL + GLM IP NP+ L E
Sbjct: 123 ICLQVNIDNEPSKSGCSLNELPALAAAIAELPQLTLRGLMAIP----NPERGEAALRESF 178
Query: 182 RECK---------------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R L LSMGM+ D ELAI G+T VR+G+ +FG R
Sbjct: 179 RAMNNALIQLRQDQPGTGPLDTLSMGMSDDLELAIGEGSTWVRVGTAVFGPR 230
>gi|170589287|ref|XP_001899405.1| Hypothetical UPF0001 protein F09E5.8 in chromosome II [Brugia
malayi]
gi|158593618|gb|EDP32213.1| Hypothetical UPF0001 protein F09E5.8 in chromosome II, putative
[Brugia malayi]
Length = 268
Score = 115 bits (287), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 127/241 (52%), Gaps = 20/241 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRP----KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
+L + L++ +++IEN + A++ SLVAVSK S I+ GQ+ F EN
Sbjct: 24 ALVDNLRLIRRRIENVSKKAEQSPYWRGQKPSLVAVSKTKSSSLIQCCYDAGQMKFGENY 83
Query: 58 LQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMI 114
+QE K L+ + +++ FIG++QSNK++++ + +ET+ +K AS+L E+
Sbjct: 84 IQELVDKAEALKSKCPNIRWHFIGTVQSNKIAKLAEIDTLSCVETICNKKHASMLEKEVA 143
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN---- 169
K +R L V +QVNT E QK G P + R L G M I +
Sbjct: 144 KHNRKLKVLVQVNTSKEKQKGGTTPEMAIELAEFIRIHCPSLKFGGFMTIGSFAHSVSET 203
Query: 170 PKPHFYLLSEI-ARECKLTK-------LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
P F L E+ R C+LT+ LSMGM+ DFE AI G+TSVR+GS IFG R +
Sbjct: 204 PNRDFIQLFEVRKRFCELTQENERDFALSMGMSDDFEAAIMLGSTSVRVGSAIFGHRLLK 263
Query: 222 T 222
T
Sbjct: 264 T 264
>gi|46447879|gb|AAS94535.1| conserved hypothetical protein TIGR00044 [Desulfovibrio vulgaris
str. Hildenborough]
Length = 237
Score = 115 bits (287), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 117/231 (50%), Gaps = 15/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + ++E + A R V+LVAVSK ++ + + GQ F EN +QEA
Sbjct: 5 LAERYAAVRHRLETAVRRAGRAPADVTLVAVSKYHPAEAVAAVAALGQRDFGENYVQEAL 64
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK-QSRFLP 121
+K L E D+ IG +QS K ++ F +I TV EK A L + + + P
Sbjct: 65 QKQEALAGE-DILWHCIGHVQSRKAKDVAGRFALIHTVDSEKLAHNLHKALWRPEDDTCP 123
Query: 122 V----YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHF 174
V +QVN G E+QKSGI +T Q L + GLMC+PP + +P F
Sbjct: 124 VVQDVLLQVNIGEEVQKSGIDAAETARLAETVLQLPTLRLCGLMCLPPFFDDGEAARPFF 183
Query: 175 YLLSEIARECKLT------KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L ++ + +L+ LSMGM+ DFE A+ GAT VR+G+ IFG RP
Sbjct: 184 AALRKLRDDLELSLGVPLPHLSMGMSGDFEQAVEEGATIVRVGTDIFGPRP 234
>gi|242281265|ref|YP_002993394.1| alanine racemase domain protein [Desulfovibrio salexigens DSM 2638]
gi|242124159|gb|ACS81855.1| alanine racemase domain protein [Desulfovibrio salexigens DSM 2638]
Length = 234
Score = 115 bits (287), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 113/218 (51%), Gaps = 10/218 (4%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
K+++ + + A R + V+++AVSK+ + I + + G F E+ +QEA K L
Sbjct: 16 KEEVAQACLRAGRKPEEVTVMAVSKLHAASDIEILYNAGHRCFGESYVQEALAKQEELSG 75
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
D+ FIG LQS K ++ F + +V K A LL+ + + IQVNT
Sbjct: 76 -LDIDWHFIGGLQSKKAKQVAGKFSAVHSVDSSKLAGLLNKKAEALDVVQNILIQVNTAC 134
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY---LLSEIAREC 184
E QK G+ V + L + GLM +PP G+P +P+F +LSE +
Sbjct: 135 EGQKCGVTEETLPALVEEIQGYKNLKLIGLMALPPFFGDPEGARPYFARLRMLSEGMEKL 194
Query: 185 ---KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
KL +LSMGMT DF +AI G+T +R+G+ IFG RP
Sbjct: 195 FGIKLPELSMGMTGDFRVAIEEGSTMIRVGTKIFGTRP 232
>gi|303246794|ref|ZP_07333071.1| alanine racemase domain protein [Desulfovibrio fructosovorans JJ]
gi|302491811|gb|EFL51691.1| alanine racemase domain protein [Desulfovibrio fructosovorans JJ]
Length = 229
Score = 115 bits (287), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 107/224 (47%), Gaps = 15/224 (6%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA--KK 63
+L K +I ++ R +V+LVAVSK+ D ++ +CGQ IF E+ +QEA K
Sbjct: 8 RLAHVKGRIADACAACGRDPAAVTLVAVSKLHDVAEVAAMAACGQRIFGESYIQEALPKM 67
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
+ P W FIG LQ NK V+ F +I TV A +L + +
Sbjct: 68 EAAPAGLAW----HFIGHLQRNKAKLAVARFALIHTVDNADLAGILQKRTAEAGLTQDIC 123
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVN E QKSG+ P + L + GLM IPP +P +P F L +
Sbjct: 124 LQVNVAGESQKSGVDPRRLPKLAEAVAAMGALRLVGLMVIPPVFDDPEGARPVFARLRTL 183
Query: 181 ARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E L LSMGM+ D E A+ GAT VR+G+ +FG R
Sbjct: 184 RDELASRLALPLPVLSMGMSGDLEAAVMEGATHVRVGTDLFGPR 227
>gi|269137633|ref|YP_003294333.1| hypothetical protein ETAE_0275 [Edwardsiella tarda EIB202]
gi|267983293|gb|ACY83122.1| hypothetical protein ETAE_0275 [Edwardsiella tarda EIB202]
gi|304557698|gb|ADM40362.1| hypothetical protein ETAF_0238 [Edwardsiella tarda FL6-60]
Length = 236
Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 110/232 (47%), Gaps = 19/232 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L +Q + +A R ++L+AVSK + I A++ GQ F EN +QE
Sbjct: 4 TIKHNLDAVRQHLVRAAEQCGRDPRDITLLAVSKTKPIEDIDAAIAAGQRAFGENYVQEG 63
Query: 62 KKKWIPLRK-------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
K R+ EW FIG LQSNK + FD I TV R K A L+ +
Sbjct: 64 VSKIQHYRQQPQGDALEW----HFIGPLQSNKSRPVAEHFDWIHTVDRVKIAQRLNEQRP 119
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
+ L V IQVN E KSGI Q Q +L + GLM IP +P
Sbjct: 120 AELEPLNVLIQVNISDEQSKSGITLEQIDALADAISQLPRLRLRGLMAIPAPEDDPARQL 179
Query: 175 YLLSEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +A R +L LS+GMT D E AI +G+T VRIG+ IFG R
Sbjct: 180 AVCTRMAQALSALQRRYPQLDTLSLGMTHDMEAAITAGSTLVRIGTAIFGAR 231
>gi|302189818|ref|ZP_07266491.1| hypothetical protein Psyrps6_25881 [Pseudomonas syringae pv.
syringae 642]
Length = 228
Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 111/224 (49%), Gaps = 10/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A+R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAAERDPASVGLLAVSKTKPASDLREAYTAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + L D+ L FIG +QSNK I FD + +V R K A LS + +
Sbjct: 63 LGKQLELS---DLPLCWHFIGPIQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L + IQVN E KSG P +L + GLM IP + F
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLPALAAAIMALPRLRLRGLMAIPEPTDDSAAQNASFAA 179
Query: 177 LSEIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + ++ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQQQLNLPLDTLSMGMSHDLEAAIAQGATWVRIGTALFGAR 223
>gi|28872160|ref|NP_794779.1| hypothetical protein PSPTO_5046 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28855414|gb|AAO58474.1| conserved protein of unknown function [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 228
Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 108/224 (48%), Gaps = 10/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ AKR SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAAKRDPASVGLLAVSKTKPAGDLREAYTAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + L D+ L FIG +QSNK I F + +V R K A LS + +
Sbjct: 63 LGKQLELA---DLPLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEGLEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN E KSG P +L + GLM IP +P +
Sbjct: 120 LNICIQVNVSGEASKSGCAPQDLPALAAAINALPRLKLRGLMAIPEPTDDPAAQAASFAA 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLNLSLDTLSMGMSHDLEAAIAQGATWVRIGTALFGAR 223
>gi|189423531|ref|YP_001950708.1| alanine racemase domain protein [Geobacter lovleyi SZ]
gi|189419790|gb|ACD94188.1| alanine racemase domain protein [Geobacter lovleyi SZ]
Length = 228
Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 118/230 (51%), Gaps = 14/230 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L + +I+ + ++ R +V LVAVSK+ + + A + GQ +F EN +QE
Sbjct: 1 MSVTGNLAAVQARIQRACTISGRAPSTVRLVAVSKLHPAALVAEAAAAGQTVFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM-IKQSRF 119
K L + V+ IG LQSNKV + + +I TV R A + + KQS
Sbjct: 61 LVDKAAQLARP--VEWHMIGHLQSNKVKYLPGIVSMIHTVDRLSLAQEIDRQWRDKQSAA 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ +QVN E KSG + + V + + V GLM +PP +P +P+F
Sbjct: 119 CDILVQVNVSGEATKSGTTATEAVELVRHIAKLPNVRVRGLMTMPPFFDDPEAARPYFRE 178
Query: 177 L--------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L SE ++T+LSMGM+ DFE+AI GAT VR+G+ IFG R
Sbjct: 179 LRLLADRISSEQIPAVEMTELSMGMSGDFEVAIEEGATLVRVGTAIFGGR 228
>gi|241664091|ref|YP_002982451.1| alanine racemase domain-containing protein [Ralstonia pickettii
12D]
gi|240866118|gb|ACS63779.1| alanine racemase domain protein [Ralstonia pickettii 12D]
Length = 238
Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 119/230 (51%), Gaps = 20/230 (8%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK- 64
LQ +Q+I + LA R V+L+AVSK D+ IR A + GQ +F EN +QE K
Sbjct: 7 NLQAVRQRITTACTLASRDAAGVTLLAVSKTFDADAIRAAHAAGQRLFGENYVQEGVAKI 66
Query: 65 --WIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
LRK D ++ FIG LQSNK + FD + +V R K A LS + L
Sbjct: 67 DALADLRKGTDPIRWHFIGPLQSNKTRAVAEQFDWVHSVDRLKIAERLSAQRPDTLPPLQ 126
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY----QLNVEGLMCIPPAMGNP----KPH 173
V +++N + K G++P+ D V+ Q +L + GLM +P +P KP
Sbjct: 127 VCLEINISRQASKHGLLPD--FDEVLAVAQAVLALPRLQLRGLMAVPEPSDDPVAQRKP- 183
Query: 174 FYLLSEIA---REC--KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L +A RE L LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 184 FADLRALAGRLREAGIPLDTLSMGMSADLEDAIAEGATIVRVGSAIFGAR 233
>gi|154497036|ref|ZP_02035732.1| hypothetical protein BACCAP_01329 [Bacteroides capillosus ATCC
29799]
gi|150273435|gb|EDN00563.1| hypothetical protein BACCAP_01329 [Bacteroides capillosus ATCC
29799]
Length = 238
Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 113/231 (48%), Gaps = 13/231 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L +++ K++I +A+ R V+LVA +K+ S IR A++ G + EN++QE
Sbjct: 1 MTLPERVEAVKREIAAAALEVGREAAEVTLVAATKVQTSDTIRQAIAAGITVCGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ L FIG LQ+NKV +V D+IE++ + + + K
Sbjct: 61 -MTAHLDDDAYAGAALHFIGHLQTNKVKYVVGRVDMIESIDSRRLLEAVEAQAAKLDLVQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP-------- 172
+ +++N G E KSG P + + L + + + GLM IPP P
Sbjct: 120 DILLEINVGGEESKSGAEPEEALELARLAAELPHIRLRGLMAIPPVATVPGGNRHFFAEM 179
Query: 173 -HFYLLSEIARECKLTK---LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
H Y+ A + T LSMGM+ D+E A+ GAT VR+G+ +FG RP
Sbjct: 180 YHLYVDIRTALDHNGTDMDCLSMGMSGDYEDAVREGATHVRVGTALFGPRP 230
>gi|113869059|ref|YP_727548.1| hypothetical protein H16_A3105 [Ralstonia eutropha H16]
gi|113527835|emb|CAJ94180.1| conserved hypothetical protein [Ralstonia eutropha H16]
Length = 231
Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 97/201 (48%), Gaps = 9/201 (4%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-EWDVQLRFIGSLQSN 85
++L+AVSK V +IR A + GQV F EN +QE K L +Q FIG LQSN
Sbjct: 28 DIALLAVSKTVPPDRIRAAYAAGQVAFGENYVQEGVDKIAALADLRHRLQWHFIGPLQSN 87
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
K + FD + V R + A LS + L V IQVN E KSG+ P +
Sbjct: 88 KTRLVAEHFDWVHAVDRLRIAERLSAQRPAGMAALQVCIQVNISGEASKSGVAPAEVPGL 147
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIARECK-----LTKLSMGMTRDF 197
L + GLM IP +P F + + + + L LSMGM+ D
Sbjct: 148 AHAVAALPGLRLRGLMAIPEPEHDPAAQRRPFAAMRAMLQALRTDGLDLDTLSMGMSGDM 207
Query: 198 ELAIASGATSVRIGSGIFGER 218
E AIA GAT VRIG+ IFG R
Sbjct: 208 EAAIAEGATLVRIGTAIFGAR 228
>gi|239909251|ref|YP_002955993.1| hypothetical protein DMR_46160 [Desulfovibrio magneticus RS-1]
gi|239799118|dbj|BAH78107.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 229
Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 102/207 (49%), Gaps = 15/207 (7%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA--KKKWIPLRKEWDVQLRFIG 80
R +V+LVAVSK D+ + + GQ IF E+ +QEA K + P W FIG
Sbjct: 26 RDPSAVTLVAVSKFHDASAVAELAAWGQTIFGESYIQEALPKIEAAPAGLSW----HFIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
LQ NK V FD+I TV + A +L Q V +QVN E QKSG+ P
Sbjct: 82 HLQRNKAKLAVGRFDLIHTVDNVELAHILQKRAAAQQLTQAVCLQVNVAGEAQKSGMAPG 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI--ARECKLTK----LSM 191
L ++GLM IPP +P +P F L E+ A +L + LSM
Sbjct: 142 GLDALAEAVAACPNLRLDGLMVIPPVFDDPEGARPAFARLRELRDALASRLGRPLPVLSM 201
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D E A+ GAT VR+G+ +FG R
Sbjct: 202 GMSGDLEAAVTEGATHVRVGTDLFGPR 228
>gi|269926055|ref|YP_003322678.1| alanine racemase domain protein [Thermobaculum terrenum ATCC
BAA-798]
gi|269789715|gb|ACZ41856.1| alanine racemase domain protein [Thermobaculum terrenum ATCC
BAA-798]
Length = 229
Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 12/223 (5%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N L+V +K + AI + R D+V+++A +K + + AL G EN++QEA+ K
Sbjct: 9 NALEVI-EKCRDRAIASGRTPDAVTIIAAAKTFPVEHVLPALEAGIRDVGENRVQEAEAK 67
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
W ++L IG+LQ NKV + ++LFD+I + S + L + Q + P+ +
Sbjct: 68 WSDHYIRNAIRLHMIGTLQKNKVKKAINLFDIIHSCSSVELG--LRISNYSQDKLFPILL 125
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA 181
+VN E K+G ++ V Q L + GLM IPP +P +P+F L ++
Sbjct: 126 EVNLANEPSKTGFPASELVPAVEQLGQVPNLKLLGLMAIPPYSPDPEQSRPYFAQLRRLS 185
Query: 182 RE-CKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ C +LSMGM+ D+ +AI GAT VRIG IFG R
Sbjct: 186 DDLCSRYDFFGPELSMGMSEDYLVAIEEGATMVRIGRAIFGPR 228
>gi|300690501|ref|YP_003751496.1| hypothetical protein RPSI07_0829 [Ralstonia solanacearum PSI07]
gi|299077561|emb|CBJ50189.1| conserved protein of unknown function, Predicted pyridoxal
phosphate-dependent enzyme [Ralstonia solanacearum
PSI07]
Length = 240
Score = 114 bits (286), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 116/231 (50%), Gaps = 14/231 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ +Q+I + LA R SV+L+AVSK D+ +R A + GQ +F EN +QE
Sbjct: 3 AIAANLQAVRQRITTACTLASRDPASVTLLAVSKTFDADAVRAAHAAGQRLFGENYVQEG 62
Query: 62 KKKWIPLRKEWD----VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K L + + FIG LQSNK + FD + +V R K A LS +
Sbjct: 63 LAKINALADLRNGPKAIGWHFIGPLQSNKTRAVAEHFDWVHSVDRLKIAERLSAQRPATL 122
Query: 118 RFLPVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KP 172
L V +++N + K G+ P N+ +L + GLM +P G+P +
Sbjct: 123 PPLQVCLEINISRQASKHGVPPDLNEVLALARAVAALPRLQLRGLMAVPEPAGDPATRRA 182
Query: 173 HFYLLSEIA---RECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L ++A RE L LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 183 PFAALRDLADRLRETGLPVDTLSMGMSVDLEDAIAQGATIVRVGSAIFGAR 233
>gi|262191072|ref|ZP_06049279.1| hypothetical protein VIH_001443 [Vibrio cholerae CT 5369-93]
gi|262033048|gb|EEY51579.1| hypothetical protein VIH_001443 [Vibrio cholerae CT 5369-93]
Length = 236
Score = 114 bits (285), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 114/228 (50%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A GQ+ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQLYFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L + L + GLM IP P F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYSQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGER 230
>gi|295675574|ref|YP_003604098.1| alanine racemase domain protein [Burkholderia sp. CCGE1002]
gi|295435417|gb|ADG14587.1| alanine racemase domain protein [Burkholderia sp. CCGE1002]
Length = 240
Score = 114 bits (285), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 106/229 (46%), Gaps = 17/229 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L ++I +A A R SV L+AVSK + +R A + GQ F EN +QEA
Sbjct: 12 FAHNLADVHERIAKAAQAAGRDAQSVMLLAVSKTFPADAVRDAHAAGQRAFGENYVQEAL 71
Query: 63 KKWIPLRK-----EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K L EW FIG LQSNK + FD + +V R K A LS +
Sbjct: 72 DKIQTLADLRASLEW----HFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDNL 127
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPH 173
L V +QVN E KSG+ P++ +L + GLM IP G+ PH
Sbjct: 128 PPLNVCLQVNVSGEASKSGVAPDEAAAIAHQITALPKLKLRGLMSIPEPAGDLDAQRAPH 187
Query: 174 FYLLSEIAR----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L R L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 188 RQLRELFERLRNDGLALDTLSMGMSADLEAAVLEGATIVRVGTAIFGAR 236
>gi|71737988|ref|YP_272771.1| hypothetical protein PSPPH_0468 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71558541|gb|AAZ37752.1| conserved hypothetical protein TIGR00044 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320321983|gb|EFW78079.1| hypothetical protein PsgB076_24359 [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330912|gb|EFW86886.1| hypothetical protein PsgRace4_06068 [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 228
Score = 114 bits (285), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 107/224 (47%), Gaps = 10/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAANREPASVGLLAVSKTKPAGDLREAYTAGLRNFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + L D+ L FIG +QSNK I F + +V R K A LS + +
Sbjct: 63 LGKQLELS---DLPLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN E KSG P +L + GLM IP +P +
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLPTLAAAIIALPRLKLRGLMAIPEPTDDPAAQHASFAA 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGAR 223
>gi|121590705|ref|ZP_01678037.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|153819160|ref|ZP_01971827.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|153826571|ref|ZP_01979238.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|227080671|ref|YP_002809222.1| hypothetical protein VCM66_0446 [Vibrio cholerae M66-2]
gi|229507099|ref|ZP_04396605.1| hypothetical protein VCF_002321 [Vibrio cholerae BX 330286]
gi|298501008|ref|ZP_07010809.1| YggS family pyridoxal phosphate enzyme [Vibrio cholerae MAK 757]
gi|121547436|gb|EAX57545.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|126510305|gb|EAZ72899.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|149739663|gb|EDM53877.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|227008559|gb|ACP04771.1| conserved hypothetical protein [Vibrio cholerae M66-2]
gi|229355844|gb|EEO20764.1| hypothetical protein VCF_002321 [Vibrio cholerae BX 330286]
gi|297540256|gb|EFH76316.1| YggS family pyridoxal phosphate enzyme [Vibrio cholerae MAK 757]
Length = 236
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 112/228 (49%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSGI P Q L + L + GLM IP + + S
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFS 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A + ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKHPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGER 230
>gi|91781864|ref|YP_557070.1| hypothetical protein Bxe_A3981 [Burkholderia xenovorans LB400]
gi|91685818|gb|ABE29018.1| Protein of unknown function UPF0001 [Burkholderia xenovorans LB400]
Length = 232
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 111/223 (49%), Gaps = 9/223 (4%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L+ +Q+I +A +A R S+ L+AVSK ++ +R A + GQ F EN +QEA K
Sbjct: 6 HNLEAVRQRIATAAHVAGRDTRSIHLLAVSKTFPAEDVRAAYAAGQRAFGENYVQEAITK 65
Query: 65 WIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
L ++ FIG LQSNK + FD + +V R K A LS + L V
Sbjct: 66 IEALADLRATIEWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDNLPPLNVC 125
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK----PHFYL--L 177
+QVN E KSG+ + +L + GLM IP G+ PH L L
Sbjct: 126 LQVNISGEASKSGVGIAEAAQVAQAIAALPKLKLRGLMAIPEPAGSIDEQRVPHRQLREL 185
Query: 178 SEIARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E R+ L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 186 FERLRDGGLALDTLSMGMSSDLEAAVLEGATIVRVGTAIFGAR 228
>gi|78065293|ref|YP_368062.1| hypothetical protein Bcep18194_A3817 [Burkholderia sp. 383]
gi|77966038|gb|ABB07418.1| protein of unknown function UPF0001 [Burkholderia sp. 383]
Length = 257
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 111/225 (49%), Gaps = 9/225 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ Q+I ++A A R +VSL+AVSK + +R A + GQ F EN +QE+
Sbjct: 29 LAARLESVHQRIADAARAAGRDPATVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQESI 88
Query: 63 KKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D++ FIG LQSNK + FD + +V R K A LS + L
Sbjct: 89 DKIDALADLRADLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLSEQRPAHLPPLN 148
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK----PHFYLL 177
V +QVN E KSG+ P + L + GLM IP G+ + PH L
Sbjct: 149 VCVQVNISGEASKSGVAPGDVAEVARAVAALPSLRLRGLMAIPEPAGDTEAQRAPHRALR 208
Query: 178 SEI----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ A L LSMGM+ D + A+ GAT VR+G+ IFG R
Sbjct: 209 ALFDTLRADGLPLDTLSMGMSADLDAAVLEGATIVRVGTAIFGAR 253
>gi|332283446|ref|YP_004415357.1| hypothetical protein PT7_0193 [Pusillimonas sp. T7-7]
gi|330427399|gb|AEC18733.1| hypothetical protein PT7_0193 [Pusillimonas sp. T7-7]
Length = 250
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 13/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L + +I +AI A R DSV+L+ VSK IR A+ G F ENK QE
Sbjct: 6 TIAARLSQVQDRIRKTAIQAGRSADSVTLLPVSKTFGEDAIREAVKAGVYRFGENKAQEI 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K+ PL + D+ IG LQ+NK ++ + I+++ R A L + ++ R +
Sbjct: 66 RSKFEPL-ADCDIDWVMIGHLQTNKAKDVARMASEIQSLDRMDLAIALDRRLQQEGRAID 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI-LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+QV T E K G+ P + F+ + R L ++GLM + + + F L
Sbjct: 125 ALVQVKTSSEPSKYGLPPEELPGFLRQVARDIPTLRIKGLMTLAINAADDAAVRACFRTL 184
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + + L +LSMGM+ DFE+AI G+T VRIG+ IFG R
Sbjct: 185 RELRDQMRQEDIAGIELDRLSMGMSGDFEIAIEEGSTEVRIGTAIFGGR 233
>gi|308177570|ref|YP_003916976.1| pyridoxal phosphate-dependent enzyme [Arthrobacter arilaitensis
Re117]
gi|307745033|emb|CBT76005.1| putative pyridoxal phosphate-dependent enzyme [Arthrobacter
arilaitensis Re117]
Length = 253
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 111/207 (53%), Gaps = 13/207 (6%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R SV L+ V+K V ++++R+A+ G ENK+QEA +K L ++ IG L
Sbjct: 36 RRAGSVRLLPVTKTVPAQRLRLAIEAGVSWLGENKVQEAWEKSQQLADVPQLKYSVIGHL 95
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q+NK + D + + + A L + + R LPV+IQVNT E K GI P Q
Sbjct: 96 QTNKAKYVARFADEFQALDNLRQAQALERRLEVEDRILPVFIQVNTSGEESKFGIQPAQA 155
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPH-----FYLLSEIARECK------LTKLSM 191
F+ + +L V+GLM + A+ +P+ F L + +E + + +LSM
Sbjct: 156 AGFLKQLQVFERLQVKGLMTL--AVFSPEQELVRACFRKLVAVRQELRELDLGNVEELSM 213
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DFELAIA GAT VR+G GIFG R
Sbjct: 214 GMSGDFELAIAEGATVVRVGQGIFGAR 240
>gi|330873946|gb|EGH08095.1| hypothetical protein PSYMP_05414 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 228
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 108/224 (48%), Gaps = 10/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ AKR SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAAKRDPASVGLLAVSKTKPAGDLREAYTAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + L D+ L FIG +QSNK I F + +V R K A LS + +
Sbjct: 63 LGKQLELA---DLPLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPESLEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN E KSG P +L + GLM IP +P +
Sbjct: 120 LNICVQVNVSGEASKSGCAPQDLPALAAAISALPRLKLRGLMAIPEPTDDPAAQAASFAA 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQAQLNLPLDTLSMGMSHDLEAAIAQGATWVRIGTALFGAR 223
>gi|120553473|ref|YP_957824.1| alanine racemase domain-containing protein [Marinobacter aquaeolei
VT8]
gi|120323322|gb|ABM17637.1| alanine racemase domain protein [Marinobacter aquaeolei VT8]
Length = 237
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 13/232 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + + ++I+ + + A R SV L+AVSK ++ ++ A GQ+ F EN LQEA
Sbjct: 3 SIADNIGSVTRRIQKATLQAGREPGSVRLLAVSKTRPAEDLKAAFEAGQIAFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L ++ FIG +QSNK +I F + +V R K A LS + + L
Sbjct: 63 LDKMQALSDIEGIEWHFIGPIQSNKTRQIAEAFAWVHSVDRLKIARRLSEQRPETLPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL----- 176
+ +QVN E KSG ++ + + + L + GLM IP P+ L
Sbjct: 123 ICLQVNINNEDSKSGCTLDELDELLEAIGELPNLRLRGLMAIPDP-DQPEAELRLSFRKL 181
Query: 177 ---LSEIARE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+++ ++ L LSMGM+ D E+AIA GAT VR+G+ +FG RP +
Sbjct: 182 ASTLTKLRQDHPEAGPLDTLSMGMSDDLEMAIAEGATWVRVGTALFGARPAK 233
>gi|309388999|gb|ADO76879.1| alanine racemase domain protein [Halanaerobium praevalens DSM 2228]
Length = 234
Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 115/207 (55%), Gaps = 11/207 (5%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGS 81
R + L+AVSK ++ + + G F EN++QE ++K L K D+ FIG
Sbjct: 26 RDPQEIKLLAVSKNHYAEAVEILNEAGVSYFGENRVQELEEKNEKLIEKGIDIDWHFIGH 85
Query: 82 LQSNKVSEIVSLFD--VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
LQ NKV ++ + + +I+++ + A ++ K R +PV ++VN + K GIMP
Sbjct: 86 LQRNKVKYLMRMENCQMIQSIDSLRLAKEVNKRAKKNERIIPVLVEVNMAKDENKFGIMP 145
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE-CK----LTKLSM 191
+ KDF+ ++ L +EGLM I P + + + +F + +I + C+ L +LSM
Sbjct: 146 EEVKDFLKQIKEFENLKIEGLMTILPYLDDSQKLRSYFKQMKKIYDDVCENLMPLNELSM 205
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GMT D+++AI GAT VR+G IFGER
Sbjct: 206 GMTNDYQIAIEEGATIVRVGRAIFGER 232
>gi|330872136|gb|EGH06285.1| hypothetical protein Pgy4_01140 [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 228
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 107/224 (47%), Gaps = 10/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAANREPASVGLLAVSKTKPAGDLREAYTAGLRNFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + L D+ L FIG +QSNK I F + +V R K A LS + +
Sbjct: 63 LGKQLELS---DLPLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN E KSG P +L + GLM IP +P +
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLPTLAAAIIALPRLKLRGLMAIPEPTDDPAAQHASFAA 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLNLGLDTLSMGMSHDLEAAIAQGATWVRIGTALFGAR 223
>gi|113461358|ref|YP_719427.1| hypothetical protein HS_1215 [Haemophilus somnus 129PT]
gi|112823401|gb|ABI25490.1| conserved hypothetical protein [Haemophilus somnus 129PT]
Length = 231
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 114/230 (49%), Gaps = 13/230 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + N L ++I AKR +VSL+AVSK + I +A GQ F EN +QE
Sbjct: 2 MQIKNNLAKINRQISQYCEQAKRNSSTVSLLAVSKTKPVEDILIAYQAGQTAFGENYVQE 61
Query: 61 AKKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K I E +QL FIG LQSNK + FD ++T+ REK A+ L+ + +
Sbjct: 62 GVEK-IQYFIEQHIQLEWHFIGPLQSNKTKLVAENFDWMQTLDREKIATRLNEQRPHYKQ 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---- 174
L V IQ+N E KSGI P + + L + GLM IP N
Sbjct: 121 PLNVLIQINISAENSKSGIQPQEMLSLAKHIQNLPHLRLRGLMAIPEPTDNITAQEQAFN 180
Query: 175 ---YLLSEIA---RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
YL +++ + K+ LSMGM+ D AI G+T VRIG+ IFG+R
Sbjct: 181 QMKYLFTQLQLAFPDEKIDTLSMGMSDDMASAIKCGSTMVRIGTAIFGKR 230
>gi|332654858|ref|ZP_08420600.1| pyridoxal phosphate enzyme, YggS family [Ruminococcaceae bacterium
D16]
gi|332516201|gb|EGJ45809.1| pyridoxal phosphate enzyme, YggS family [Ruminococcaceae bacterium
D16]
Length = 235
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 13/231 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++K+ +A A R ++L A +K+ IR A++ G + EN++QE
Sbjct: 1 MSIQEHVNAVREKMAAAAKAAGRDPGEITLCAATKVQTDDTIREAIAAGITVCGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
E Q+ FIG LQ+NKV+++V D+I +V E+ + + K
Sbjct: 61 LTAHLEANAYEG-AQVHFIGHLQTNKVNKVVGKVDLIHSVDSERLLRAIDRQADKLGLVQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
V ++VN E+ K G P++ + L + + + GLM IPP G+ P+F ++
Sbjct: 120 DVLLEVNVAGELSKGGCTPDEAWELAQLAQSLEHVRLRGLMAIPPIAQKPGDNTPYFSIM 179
Query: 178 SEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ + K + LSMGM+ D+E AIA GAT VR+G+ +FG RP
Sbjct: 180 KKLYVDIKEKIAHNQDDMDCLSMGMSGDYEDAIAQGATLVRVGTALFGPRP 230
>gi|332970489|gb|EGK09479.1| YggS family pyridoxal phosphate enzyme [Psychrobacter sp.
1501(2011)]
Length = 232
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 122/232 (52%), Gaps = 19/232 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + Q Q+I+ + ++R DSV+L+AVSK ++ I GQV F EN LQEA
Sbjct: 4 TLLQRWQEVTQQIQKACTDSER--DSVTLLAVSKTKPAEMITELAQAGQVHFGENYLQEA 61
Query: 62 KKKW---------IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
+K IP K D+ +IG +Q NK +I FD + TV R+ A L+ +
Sbjct: 62 MEKMAEIKELVASIPATK--DIVWHYIGHIQRNKTRDIAENFDWVHTVERDIIAKRLNEQ 119
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-- 170
+ L V +QVN E KSG +P++ + + + LN+ GLM IP G+
Sbjct: 120 RPQALGKLNVLVQVNIDNEDSKSGCLPSELESLITTIKSYDNLNLRGLMIIPSKEGSDAF 179
Query: 171 KPHFYLLSEIAR-ECKLTK---LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L EI + +LT+ LSMGM+ D + AIA G+T VR+GS IFG R
Sbjct: 180 ERTKKLFDEIQQAHPELTQWDTLSMGMSGDMQQAIAHGSTMVRVGSAIFGAR 231
>gi|83721068|ref|YP_441835.1| hypothetical protein BTH_I1288 [Burkholderia thailandensis E264]
gi|167580664|ref|ZP_02373538.1| hypothetical protein BthaT_21093 [Burkholderia thailandensis TXDOH]
gi|167618767|ref|ZP_02387398.1| hypothetical protein BthaB_20827 [Burkholderia thailandensis Bt4]
gi|257138004|ref|ZP_05586266.1| hypothetical protein BthaA_02119 [Burkholderia thailandensis E264]
gi|83654893|gb|ABC38956.1| conserved hypothetical protein TIGR00044 [Burkholderia
thailandensis E264]
Length = 232
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 115/228 (50%), Gaps = 13/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L +L +++I+ +A A R +V+L+AVSK + +R A + GQ F EN +QE+
Sbjct: 3 DLAARLASVQRRIDEAARAAGREPRAVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQES 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K LR E ++ FIG LQSNK + FD + T+ R K A L+ +
Sbjct: 63 IDKIDSLADLRAE--LEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLAEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK----PH- 173
L V +QVN E KSG+ P+ + L + GLM IP +P+ PH
Sbjct: 121 PLNVCVQVNISGEASKSGVAPSDAAELARAIAALPALRLRGLMAIPEPAADPEAKRAPHR 180
Query: 174 -FYLLSEIARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L E R L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 181 ALHALFEQLRADGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGAR 228
>gi|82703845|ref|YP_413411.1| hypothetical protein Nmul_A2732 [Nitrosospira multiformis ATCC
25196]
gi|82411910|gb|ABB76019.1| Protein of unknown function UPF0001 [Nitrosospira multiformis ATCC
25196]
Length = 244
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 111/220 (50%), Gaps = 9/220 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + I A A R ++L+A SK ++++R A GQ +F EN LQEA K I
Sbjct: 12 LKKVRAHITEIAGKAGRQAGEITLLAASKTNPAERLREAFVAGQTVFGENYLQEALVK-I 70
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
K+ ++ FIG +QSNK I F + +V R+K A LS + + L + +QV
Sbjct: 71 DALKDLPIEWHFIGPIQSNKTRRIAENFAWVHSVDRKKIAERLSKDRPEALPPLQICLQV 130
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLSEIARE 183
N E KSG+ P + D + +L + G+M IP + F +L E +
Sbjct: 131 NVSGEDSKSGVAPEEVADLAAHVAELPRLRLRGVMAIPELTKFTALQRSQFRMLKEAYDQ 190
Query: 184 CK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K + +SMGM+ D ELAI GAT VRIG+ IFG R
Sbjct: 191 LKQSGYDVDTISMGMSEDLELAIQEGATMVRIGTAIFGPR 230
>gi|167564005|ref|ZP_02356921.1| hypothetical protein BoklE_15722 [Burkholderia oklahomensis EO147]
Length = 232
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 112/228 (49%), Gaps = 13/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L +L +IE++A A R +V+L+AVSK + +R A + GQ F EN +QEA
Sbjct: 3 DLAARLASVHHRIEDAARAAGREPRAVTLLAVSKTFPADAVRAAHAAGQRAFGENYVQEA 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K LR E ++ FIG LQSNK I FD + TV R K A LS +
Sbjct: 63 IDKIESLADLRAE--LEWHFIGPLQSNKTRAIAERFDWVHTVDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK----PHF 174
L V +QVN E KSG+ P + + L + GLM IP +P PH
Sbjct: 121 PLDVCVQVNISGEASKSGVAPAEAAELARAVAALPALRLRGLMAIPEPAHDPDAKRAPHR 180
Query: 175 YLLSEIAR----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + R L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 181 ALHALFERLRADGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGAR 228
>gi|291550389|emb|CBL26651.1| pyridoxal phosphate enzyme, YggS family [Ruminococcus torques
L2-14]
Length = 230
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 114/227 (50%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ + KI+ + A R ++ V+L+AVSK + ++ A G +F ENK+QE
Sbjct: 2 LETQLKEVEAKIQAACDRAGRKREEVTLIAVSKTKPIEMLQEAYDLGVRVFGENKVQEIT 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L D+ IG LQ+NKV I+ D+I +V K A + E K + +
Sbjct: 62 AKYDALPD--DIHWHMIGHLQTNKVKYIIDKVDLIHSVDSVKLAETIEKEAAKHNLTANI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN E K G+ + F+ + V GLM I P + NP+ + + + + +
Sbjct: 120 LIEVNVAQEESKFGLKTEEVLPFIEKIANFEHIKVCGLMTIAPFVDNPEENRQIFANLHK 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 180 LSVDINEKNIDNVYVNILSMGMTNDYEVAIEEGATMVRVGTGIFGAR 226
>gi|160892651|ref|ZP_02073441.1| hypothetical protein CLOL250_00181 [Clostridium sp. L2-50]
gi|156865692|gb|EDO59123.1| hypothetical protein CLOL250_00181 [Clostridium sp. L2-50]
Length = 231
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 114/228 (50%), Gaps = 14/228 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVI-FAENKLQEA 61
L ++ QKI + A R + V+L+AVSK I L+ I F ENK+QE
Sbjct: 2 LKENYELVDQKITEACKRAGRDRKDVTLIAVSKTKPLSDIEELLAETDAIDFGENKVQEL 61
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ + ++ V IG LQ+NKV IV +I +V A + E K +
Sbjct: 62 VDKYETVSRK--VNWHMIGHLQTNKVKYIVDKVCLIHSVDSVNLAKTIEKEAAKHDVIVK 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLS 178
V I+VN E K G+ +T+D ++ + + +EGLM I P + +P+ HF L
Sbjct: 120 VLIEVNVAGEESKFGVSVEETEDLIMQIKDFPHIQIEGLMTIAPFVDDPEDNRVHFRRLR 179
Query: 179 EIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + + LSMGMT D+E+A+ GAT VR+G+GIFG R
Sbjct: 180 ELLLDINSKNIDNVHMNVLSMGMTNDYEVAVEEGATMVRVGTGIFGAR 227
>gi|254515818|ref|ZP_05127878.1| pyridoxal phosphate enzyme, YggS family [gamma proteobacterium
NOR5-3]
gi|219675540|gb|EED31906.1| pyridoxal phosphate enzyme, YggS family [gamma proteobacterium
NOR5-3]
Length = 230
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 107/215 (49%), Gaps = 9/215 (4%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
Q++ N+ RP SV ++AVSK ++ +R A + G F EN LQEA K I ++
Sbjct: 15 QQVSNAVEKYHRPPQSVRVMAVSKTQSAEAVRTAANAGLTDFGENYLQEALDK-IAACED 73
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
+ FIG +QSNK I + F + +V REK LS + L + IQVN E
Sbjct: 74 LGLTWHFIGPIQSNKTRPIATSFHWVHSVDREKILRRLSEQRDANLPALNICIQVNVSRE 133
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLSEIARECK--- 185
KSG+ P + L L + GLM IP A K L++ + E +
Sbjct: 134 ASKSGVAPEDLPPLLALTAGLPNLELRGLMAIPAASDDFATQKQACDLMATLFHEAQSQY 193
Query: 186 --LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ D E A+A+G+ +RIG+ IFG R
Sbjct: 194 PSLDTLSMGMSADLEAAVAAGSNMLRIGTAIFGAR 228
>gi|46143323|ref|ZP_00135498.2| COG0325: Predicted enzyme with a TIM-barrel fold [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126207540|ref|YP_001052765.1| hypothetical protein APL_0052 [Actinobacillus pleuropneumoniae L20]
gi|307256072|ref|ZP_07537860.1| hypothetical protein appser10_780 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|126096332|gb|ABN73160.1| hypothetical protein APL_0052 [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|306865494|gb|EFM97389.1| hypothetical protein appser10_780 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 231
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 102/202 (50%), Gaps = 8/202 (3%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+D+V L+AVSK + I A++ GQ F EN +QE +K ++ +++ FIG+LQS
Sbjct: 23 RDNVRLLAVSKTKPVEAIEEAIAAGQTAFGENYVQEGVEKIAYFAQQPNLEWHFIGALQS 82
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK + FD I+TV R K A LS + L V IQ+N E KSGI P + +
Sbjct: 83 NKTRLVAENFDWIQTVDRLKIAERLSAQRSANKAPLNVLIQINISDEASKSGIQPEELDE 142
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPH-------FYLLSEIARECK-LTKLSMGMTRD 196
Q L + GLM IP P+ L + E + + LSMGM+ D
Sbjct: 143 LAKAISQLPNLRLRGLMAIPKPESEPEQQKIALRKMQQLFDRLQDEFEGIDTLSMGMSDD 202
Query: 197 FELAIASGATSVRIGSGIFGER 218
AI G+T VRIG+ IFG R
Sbjct: 203 MAAAIECGSTMVRIGTAIFGAR 224
>gi|169796921|ref|YP_001714714.1| hypothetical protein ABAYE2917 [Acinetobacter baumannii AYE]
gi|169149848|emb|CAM87739.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
Length = 235
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 7/222 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q Q+I+ + LA+R ++V L+AVSK S+++R + GQ F EN LQEA
Sbjct: 9 LQDARQHVLQQIKTACELAQRAPETVQLLAVSKTHQSERLREMYAAGQRAFGENYLQEAL 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K I ++ D++ FIG +Q NK + FD + V R A LS + L +
Sbjct: 69 DK-IDALQDLDIEWHFIGHVQRNKTKHLAEQFDWVHGVDRLIIAERLSNQRGDDQAALNI 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-----PAMGNPKPHFYLL 177
+QVN + K G P + V Q ++ + GLM IP A + K F +
Sbjct: 128 CLQVNIDGQDSKDGCAPEDVAELVAQMSQLPKIRLRGLMVIPAPDNTAAFVDAKKLFDAV 187
Query: 178 -SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ A + LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 188 KDQHAHPEEWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGAR 229
>gi|307262633|ref|ZP_07544263.1| hypothetical protein appser13_620 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|306872056|gb|EFN03770.1| hypothetical protein appser13_620 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 227
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 102/202 (50%), Gaps = 8/202 (3%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+D+V L+AVSK + I A++ GQ F EN +QE +K ++ +++ FIG LQS
Sbjct: 23 RDNVRLLAVSKTKPVEAIEEAIAAGQTAFGENYVQEGVEKIAYFAQQPNLEWHFIGPLQS 82
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK + FD I+TV R K A LS++ L V IQ+N E KSGI P + +
Sbjct: 83 NKTRLVAENFDWIQTVDRLKIAERLSVQRSANKAPLNVLIQINISDEASKSGIQPEELDE 142
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--------LTKLSMGMTRD 196
Q L + GLM IP P+ L ++ + + LSMGM+ D
Sbjct: 143 LAKAISQLPNLRLRGLMAIPKPESEPEQQKIALRKMQKLFDRLQDEFEGIDTLSMGMSDD 202
Query: 197 FELAIASGATSVRIGSGIFGER 218
AI G+T VRIG+ IFG R
Sbjct: 203 MAAAIECGSTMVRIGTAIFGTR 224
>gi|326791371|ref|YP_004309192.1| hypothetical protein Clole_2286 [Clostridium lentocellum DSM 5427]
gi|326542135|gb|ADZ83994.1| protein of unknown function UPF0001 [Clostridium lentocellum DSM
5427]
Length = 229
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 118/224 (52%), Gaps = 13/224 (5%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L++ +++IE SAI + R + ++L+AVSK I+ A++ G F EN +QE +K
Sbjct: 4 RLEMIRKEIEESAIKSGRKVEDITLIAVSKTYPLASIQEAITLGCKDFGENHVQELVQKM 63
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L + V IG LQ+NKV I+ +I +V R K A + + K+ + I+
Sbjct: 64 DELNE--SVHWHLIGHLQTNKVKYIIGRTTLIHSVDRLKLAEEIEKQSAKKGYITDILIE 121
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
VN E K G + + ++ + + V GLM + P + NP +P F L +++
Sbjct: 122 VNVAKEASKHGFLVEEVIPIMVELAKMKHIRVRGLMTVAPFVANPEENRPIFRKLYDLSV 181
Query: 183 ECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K LSMGM+ D+++AI GAT VRIG+ IFG R
Sbjct: 182 DIQKQKFDNISSDILSMGMSNDYKIAIEEGATMVRIGTAIFGNR 225
>gi|317131682|ref|YP_004090996.1| alanine racemase domain protein [Ethanoligenens harbinense YUAN-3]
gi|315469661|gb|ADU26265.1| alanine racemase domain protein [Ethanoligenens harbinense YUAN-3]
Length = 242
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 11/227 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + +IE +A ++ R D+V+LVAV+K + + + AL G +F EN++QE
Sbjct: 16 IARNLDAVRARIEQAARVSGRSADAVTLVAVTKTMPASDVNAALVHGVRVFGENRVQELL 75
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K +R IG LQ+NKV +++ +I++V A + + K+ + V
Sbjct: 76 GKLPDIRLGEGQCAHLIGHLQTNKVRQVIDKVAMIQSVDSVHLAEEIDKQAAKRGLRMDV 135
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
I+VN G E KSG+ P + L V GLM +PP + +P+F + +
Sbjct: 136 LIEVNIGGEEAKSGVPPQDLPALLEAAAGFPHLRVCGLMAVPPVCADKEAVRPYFRAMRK 195
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + LSMGM+ DF++AI G+T VR+G+ IFG R
Sbjct: 196 LFIDIAPKKSDNVSMHILSMGMSGDFDIAIEEGSTMVRVGTAIFGRR 242
>gi|193215363|ref|YP_001996562.1| alanine racemase domain-containing protein [Chloroherpeton
thalassium ATCC 35110]
gi|193088840|gb|ACF14115.1| alanine racemase domain protein [Chloroherpeton thalassium ATCC
35110]
Length = 229
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 113/211 (53%), Gaps = 16/211 (7%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-AKKKWIPLRKEWDVQLRFI 79
A R +D V L+A+SK ++ I A GQ F EN +QE K PL + + F
Sbjct: 22 AGRKRDEVKLIAISKRKSAEAILEAYQAGQRYFGENYVQEFLDKVEHPLLANLEPEWHFT 81
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G LQ+NK+ I +++T+ + TA LS K+ +P+ ++VN E K G+MP
Sbjct: 82 GHLQTNKIKYIADKVAMVQTIDKFATAEALSKRAEKEGLIVPILLEVNISNEDSKYGVMP 141
Query: 140 NQTKDFVILCRQKYQL---NVEGLMCI-PPAMGNPKPHF----YLLSEIAREC----KLT 187
+D + + ++L + GLM I P + + F +LL +IA ++
Sbjct: 142 ---EDLLFETEKIHELPNVAIHGLMTIGSPDLSDVGKEFQQMRHLLEQIAENSPNPEQVK 198
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM++DF++AI GAT VRIG+ IFGER
Sbjct: 199 ELSMGMSQDFDIAIEEGATMVRIGTAIFGER 229
>gi|213156676|ref|YP_002318337.1| hypothetical protein AB57_0946 [Acinetobacter baumannii AB0057]
gi|215484383|ref|YP_002326614.1| UPF0001 protein [Acinetobacter baumannii AB307-0294]
gi|301345278|ref|ZP_07226019.1| hypothetical protein AbauAB0_03519 [Acinetobacter baumannii AB056]
gi|301510182|ref|ZP_07235419.1| hypothetical protein AbauAB05_01354 [Acinetobacter baumannii AB058]
gi|301595729|ref|ZP_07240737.1| hypothetical protein AbauAB059_07952 [Acinetobacter baumannii
AB059]
gi|332853754|ref|ZP_08434966.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter baumannii
6013150]
gi|332871126|ref|ZP_08439724.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter baumannii
6013113]
gi|213055836|gb|ACJ40738.1| hypothetical protein AB57_0946 [Acinetobacter baumannii AB0057]
gi|213987503|gb|ACJ57802.1| UPF0001 protein [Acinetobacter baumannii AB307-0294]
gi|332728440|gb|EGJ59815.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter baumannii
6013150]
gi|332731712|gb|EGJ62993.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter baumannii
6013113]
Length = 230
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 7/222 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q Q+I+ + LA+R ++V L+AVSK S+++R + GQ F EN LQEA
Sbjct: 4 LQDARQHVLQQIKTACELAQRAPETVQLLAVSKTHQSERLREMYAAGQRAFGENYLQEAL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K I ++ D++ FIG +Q NK + FD + V R A LS + L +
Sbjct: 64 DK-IDALQDLDIEWHFIGHVQRNKTKHLAEQFDWVHGVDRLIIAERLSNQRGDDQAALNI 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-----PAMGNPKPHFYLL 177
+QVN + K G P + V Q ++ + GLM IP A + K F +
Sbjct: 123 CLQVNIDGQDSKDGCAPEDVAELVAQMSQLPKIRLRGLMVIPAPDNTAAFVDAKKLFDAV 182
Query: 178 -SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ A + LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 183 KDQHAHPEEWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGAR 224
>gi|91794033|ref|YP_563684.1| hypothetical protein Sden_2682 [Shewanella denitrificans OS217]
gi|91716035|gb|ABE55961.1| Protein of unknown function UPF0001 [Shewanella denitrificans
OS217]
Length = 235
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 117/233 (50%), Gaps = 16/233 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L++ + +I + RP SV+L+AVSK I A GQ F EN +QE
Sbjct: 3 TIADRLKLAQCRIAQAEQEHHRPAQSVNLLAVSKTKPLSDIIQAYQAGQRRFGENYVQEG 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K I L +++ D++ FIG LQSNK I F + T+ REK A L + + L
Sbjct: 63 QQKIIDLAQDYPDIEWHFIGPLQSNKTRIIAEHFHWLHTLGREKIAQRLHQQRPQDKPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQVN E K+G+ + + +L + G+M IP N +++
Sbjct: 123 NVCIQVNISGEDSKAGVTLAEVPALANIIHSLPKLKLRGIMAIPSQQANFDNAGQAQAQL 182
Query: 181 ARE------C---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++E C +L LSMGM+ D LAIA G+T VRIGS IFG R
Sbjct: 183 SKEFSQLKACFDTLKQTYPQLDTLSMGMSDDLSLAIAHGSTLVRIGSAIFGAR 235
>gi|303250530|ref|ZP_07336727.1| hypothetical protein APP6_0100 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|303251874|ref|ZP_07338045.1| hypothetical protein APP2_0195 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307247027|ref|ZP_07529081.1| hypothetical protein appser2_260 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307251572|ref|ZP_07533479.1| hypothetical protein appser6_960 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302649304|gb|EFL79489.1| hypothetical protein APP2_0195 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302650518|gb|EFL80677.1| hypothetical protein APP6_0100 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306856479|gb|EFM88628.1| hypothetical protein appser2_260 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306861036|gb|EFM93042.1| hypothetical protein appser6_960 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 227
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 102/202 (50%), Gaps = 8/202 (3%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+D+V L+AVSK + I A++ GQ F EN +QE +K ++ +++ FIG+LQS
Sbjct: 23 RDNVRLLAVSKTKPVEAIEEAIAAGQTAFGENYVQEGVEKIAYFAQQPNLEWHFIGALQS 82
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK + FD I+TV R K A LS + L V IQ+N E KSGI P + +
Sbjct: 83 NKTRLVAENFDWIQTVDRLKIAERLSAQRSANKAPLNVLIQINISDEASKSGIQPEELDE 142
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPH-------FYLLSEIARECK-LTKLSMGMTRD 196
Q L + GLM IP P+ L + E + + LSMGM+ D
Sbjct: 143 LAKAISQLPNLRLRGLMAIPKPESEPEQQKIALRKMRQLFDRLQDEFEGIDTLSMGMSDD 202
Query: 197 FELAIASGATSVRIGSGIFGER 218
AI G+T VRIG+ IFG R
Sbjct: 203 MAAAIECGSTMVRIGTAIFGTR 224
>gi|29655369|ref|NP_821061.1| hypothetical protein CBU_2091 [Coxiella burnetii RSA 493]
gi|153209616|ref|ZP_01947454.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
gi|154705905|ref|YP_001425492.1| hypothetical cytosolic protein [Coxiella burnetii Dugway 5J108-111]
gi|161831443|ref|YP_001597825.1| hypothetical protein COXBURSA331_A2216 [Coxiella burnetii RSA 331]
gi|212213535|ref|YP_002304471.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212]
gi|212219589|ref|YP_002306376.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154]
gi|29542641|gb|AAO91575.1| hypothetical cytosolic protein [Coxiella burnetii RSA 493]
gi|120575301|gb|EAX31925.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
gi|154355191|gb|ABS76653.1| hypothetical cytosolic protein [Coxiella burnetii Dugway 5J108-111]
gi|161763310|gb|ABX78952.1| conserved hypothetical protein [Coxiella burnetii RSA 331]
gi|212011945|gb|ACJ19326.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212]
gi|212013851|gb|ACJ21231.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154]
Length = 228
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 117/229 (51%), Gaps = 15/229 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ +I + R ++VSL+AVSK KI+ A++ GQ F EN LQE
Sbjct: 1 MSISENIKRITTEIRQAEKEFSRSPNAVSLLAVSKSQSLDKIKEAIAAGQRQFGENYLQE 60
Query: 61 AKKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
A K LR EW FIG +Q+NK I + FD +++VSR + AS L +
Sbjct: 61 ALVKIKALRAHPLEW----HFIGVIQTNKTRLISTNFDWVQSVSRLEVASELHHYRPLEL 116
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHF 174
L + IQVN E KSG+ +F Q +L + GLM IP + K F
Sbjct: 117 PPLSICIQVNISEEKTKSGVDLTNLSEFAKAVSQFDRLRLRGLMTIPAYQKDFNAQKATF 176
Query: 175 YLLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E I + L LS+GMT DF AIA+G+T VRIG+GIFG R
Sbjct: 177 EKLKEAQQQLIKKGLPLDVLSLGMTHDFRAAIAAGSTMVRIGTGIFGPR 225
>gi|293602361|ref|ZP_06684807.1| YggS family pyridoxal phosphate enzyme [Achromobacter piechaudii
ATCC 43553]
gi|292819123|gb|EFF78158.1| YggS family pyridoxal phosphate enzyme [Achromobacter piechaudii
ATCC 43553]
Length = 239
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 115/231 (49%), Gaps = 17/231 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++ Q+I ++ A R D+V L+ VSK + IR A++ G F ENK QE
Sbjct: 6 TMAGRIARIHQRIADACARAGRSPDNVVLLPVSKTFEVDAIREAMALGMTRFGENKTQEL 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K L + ++ IG LQ+NK + D ++++ R A L ++ + R L
Sbjct: 66 RQKAAALAGQG-LRWVLIGHLQTNKAKDAARDADEVQSLDRVDLAEALHRRLLNEGRTLD 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGNPKPHFY----- 175
V +QV T E K G+ P F+ ++ L V+GLM + A+ +P P
Sbjct: 125 VLVQVKTSTEPSKFGMAPEDVSAFLRRIAAEFPTLRVQGLMTL--AVNSPDPDAVRACFR 182
Query: 176 --------LLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +E L +LSMGM+ DFELAI G+T VRIG+ IFG R
Sbjct: 183 ALRTLRDSLRAENIEGVSLERLSMGMSGDFELAIEEGSTEVRIGTAIFGAR 233
>gi|134294804|ref|YP_001118539.1| alanine racemase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134137961|gb|ABO53704.1| alanine racemase domain protein [Burkholderia vietnamiensis G4]
Length = 232
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/205 (38%), Positives = 98/205 (47%), Gaps = 17/205 (8%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGS 81
+VSL+AVSK + +R A + GQ F EN +QE+ K L EW FIG
Sbjct: 28 TVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQESIDKIDALADLRSALEW----HFIGP 83
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQSNK + FD + +V R K A LS + Q L V IQVN E KSG+ P
Sbjct: 84 LQSNKTRAVAERFDWVHSVDRLKIAQRLSEQRPPQLPPLNVCIQVNISGEESKSGVAPAD 143
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPK----PHFYLLSEI----ARECKLTKLSMGM 193
+ L + GLM IP G+ PH L + A L LSMGM
Sbjct: 144 VAELARAVAALPALRLRGLMAIPEPAGDTDAQRAPHRALHALFDTLRAHGLALDTLSMGM 203
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D E A+ GAT VR+G+ IFG R
Sbjct: 204 SADLEAAVLEGATIVRVGTAIFGAR 228
>gi|319796099|ref|YP_004157739.1| alanine racemase domain protein [Variovorax paradoxus EPS]
gi|315598562|gb|ADU39628.1| alanine racemase domain protein [Variovorax paradoxus EPS]
Length = 233
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 105/233 (45%), Gaps = 25/233 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+G+ LQ K +IE + + A R V L+AVSK + +R A + GQ F EN +QE
Sbjct: 4 IGDDLQQVKNRIEAACVTAGRDPAGVRLLAVSKTFGADAVRDAHAAGQTAFGENYVQEGL 63
Query: 63 KKWIPLRK-----EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K L EW IG LQSNK + FD + ++ R K A LS +
Sbjct: 64 DKIEALADLRASLEW----HCIGPLQSNKTRPVAEQFDWVHSIDRLKIAERLSAQRPAHL 119
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V +QVN KSG+ P + L + GLM IP P P F
Sbjct: 120 APLNVCLQVNVDGGANKSGVPPEEAVALARAVAALPHLRLRGLMAIP----EPAPDFAAQ 175
Query: 178 SEIARECK------------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ L LS+GM+ D E AI++G+T VR+G+ IFG R
Sbjct: 176 RDLCLRAHAVFESIKGAGIALDTLSLGMSADLEAAISAGSTMVRVGTAIFGGR 228
>gi|332308055|ref|YP_004435906.1| alanine racemase domain protein [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332175384|gb|AEE24638.1| alanine racemase domain protein [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 227
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 114/228 (50%), Gaps = 15/228 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L++ + I S A RP +SV L+AV+K I A G +F EN +QE
Sbjct: 3 TIAERLKIALKTITQSVCEANRPANSVKLLAVTKTKPVSDIVQAYEAGHRLFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + D++ FIG LQSNK + FD + ++ R K A L+ + + L
Sbjct: 63 VDKIHQLSELDDIEWHFIGPLQSNKTRPVAENFDWVHSIDRLKIAQRLNDQRSAHKK-LN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQ---KYQLNVEGLMCIPPAMGNPKPHFYLLS 178
V IQVN E K+G+ P +D +L Q L + GLM IP A N + LS
Sbjct: 122 VCIQVNIDNEASKAGVPP---EDVNLLAEQISNMPNLTLRGLMTIPKAQQNAEMQRKSLS 178
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + ++ LSMGM+ D +LAI G+T VRIGS IFG R
Sbjct: 179 AMNALFVQLQTKYPQIDTLSMGMSNDMQLAIECGSTMVRIGSAIFGSR 226
>gi|190149320|ref|YP_001967845.1| hypothetical protein APP7_0051 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307244852|ref|ZP_07526951.1| hypothetical protein appser1_660 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307253806|ref|ZP_07535660.1| hypothetical protein appser9_660 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307258262|ref|ZP_07540005.1| hypothetical protein appser11_670 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|189914451|gb|ACE60703.1| hypothetical protein APP7_0051 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|306854297|gb|EFM86503.1| hypothetical protein appser1_660 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306863290|gb|EFM95230.1| hypothetical protein appser9_660 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306867722|gb|EFM99567.1| hypothetical protein appser11_670 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 227
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 102/202 (50%), Gaps = 8/202 (3%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+D+V L+AVSK + I A++ GQ F EN +QE +K ++ +++ FIG LQS
Sbjct: 23 RDNVRLLAVSKTKPVEAIEEAIAAGQTAFGENYVQEGVEKIAYFAQQPNLEWHFIGPLQS 82
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK + FD I+TV R K A LS++ L V IQ+N E KSGI P + +
Sbjct: 83 NKTRLVAENFDWIQTVDRLKIAERLSVQRSANKAPLNVLIQINISDEASKSGIQPEELDE 142
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPH-------FYLLSEIARECK-LTKLSMGMTRD 196
Q L + GLM IP P+ L + E + + LSMGM+ D
Sbjct: 143 LAKAISQLPNLRLRGLMAIPKPESEPEQQKIALRKMQQLFDRLQDEFEGIDTLSMGMSDD 202
Query: 197 FELAIASGATSVRIGSGIFGER 218
AI G+T VRIG+ IFG R
Sbjct: 203 MAAAIECGSTMVRIGTAIFGTR 224
>gi|167571150|ref|ZP_02364024.1| hypothetical protein BoklC_15012 [Burkholderia oklahomensis C6786]
Length = 232
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 112/228 (49%), Gaps = 13/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L +L +IE++A A R +V+L+AVSK + +R A + GQ F EN +QEA
Sbjct: 3 DLAARLASVHHRIEDAARAAGREPRAVTLLAVSKTFPAGAVRAAHAAGQRAFGENYVQEA 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K LR E ++ FIG LQSNK + FD + TV R K A LS +
Sbjct: 63 IDKIESLADLRAE--LEWHFIGPLQSNKTRAVAERFDWVHTVDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK----PHF 174
L V +QVN E KSG+ P + + L + GLM IP +P PH
Sbjct: 121 PLDVCVQVNISGEASKSGVAPAEAAELARAVAALPALRLRGLMAIPEPAHDPDAKRAPHR 180
Query: 175 YLLSEIAR----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + R L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 181 ALHALFERLRADGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGAR 228
>gi|237798174|ref|ZP_04586635.1| hypothetical protein POR16_04969 [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331021026|gb|EGI01083.1| hypothetical protein POR16_04969 [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 228
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 107/224 (47%), Gaps = 10/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A A R SV L+AVSK + +R A + G + F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAAHAANRDPASVGLLAVSKTKPASDLREAYTEGLLHFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + L D+ L FIG +QSNK I F + +V R K A LS +
Sbjct: 63 LGKQLELT---DLPLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPDALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN E KSG P + +L + GLM IP +P +
Sbjct: 120 LNICIQVNVSGEASKSGCAPQDLPELAAAINVLPRLKLRGLMAIPEPTDDPHEQAAAFAA 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLGLPLDTLSMGMSNDLEAAIAQGATWVRIGTALFGAR 223
>gi|83747264|ref|ZP_00944306.1| Hypothetical cytosolic protein [Ralstonia solanacearum UW551]
gi|207744253|ref|YP_002260645.1| ipr001608 alanine racemase, n-terminal protein [Ralstonia
solanacearum IPO1609]
gi|83726088|gb|EAP73224.1| Hypothetical cytosolic protein [Ralstonia solanacearum UW551]
gi|206595658|emb|CAQ62585.1| ipr001608 alanine racemase, n-terminal protein [Ralstonia
solanacearum IPO1609]
Length = 240
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 110/230 (47%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ LQ +Q+I + LA R SV+L+AVSK D+ +R A + GQ +F EN +QE
Sbjct: 4 IAANLQAVRQRITTACTLASRDPASVTLLAVSKTFDADAVRRAHAAGQRLFGENYMQEGI 63
Query: 63 KKWIPL----RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K L + FIG LQSNK + FD + +V R K A LS +
Sbjct: 64 AKIDALADLRNGPGAIGWHFIGPLQSNKTRAVAEHFDWVHSVDRLKLAERLSAQRPAGLP 123
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQT--KDFVILCRQKYQLNVEGLMCIPPAMGN------P 170
L V +++N + K G+ P+ +L + GLM +P G+ P
Sbjct: 124 PLQVCLEINISRQASKHGVPPDADGILALARAVAALPRLQLRGLMAVPEPAGDPAARRAP 183
Query: 171 KPHFYLLSEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L++ RE L LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 184 FAALRTLADRLREAGLPIDTLSMGMSADLEDAIAEGATIVRVGSAIFGAR 233
>gi|307260503|ref|ZP_07542197.1| hypothetical protein appser12_780 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306869815|gb|EFN01598.1| hypothetical protein appser12_780 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 227
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 102/202 (50%), Gaps = 8/202 (3%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+D+V L+AVSK + I A++ GQ F EN +QE +K ++ +++ FIG+LQS
Sbjct: 23 RDNVRLLAVSKTKPVEAIEEAIAAGQTAFGENYVQEGVEKIAYFAQQPNLEWHFIGALQS 82
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK + FD I+TV R K A LS + L V IQ+N E KSGI P + +
Sbjct: 83 NKTRLVAENFDWIQTVDRLKIAERLSAQRSANKAPLNVLIQINISDEAYKSGIQPEELDE 142
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPH-------FYLLSEIARECK-LTKLSMGMTRD 196
Q L + GLM IP P+ L + E + + LSMGM+ D
Sbjct: 143 LAKAISQLPNLRLRGLMAIPKPESEPEQQKIALRKMRQLFDRLQDEFEGIDTLSMGMSDD 202
Query: 197 FELAIASGATSVRIGSGIFGER 218
AI G+T VRIG+ IFG R
Sbjct: 203 MAAAIECGSTMVRIGTAIFGTR 224
>gi|229519847|ref|ZP_04409281.1| hypothetical protein VIF_000361 [Vibrio cholerae TM 11079-80]
gi|229343135|gb|EEO08119.1| hypothetical protein VIF_000361 [Vibrio cholerae TM 11079-80]
Length = 236
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 113/228 (49%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 IDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPMDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L + L + GLM IP P F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGER 230
>gi|210622347|ref|ZP_03293116.1| hypothetical protein CLOHIR_01064 [Clostridium hiranonis DSM 13275]
gi|210154335|gb|EEA85341.1| hypothetical protein CLOHIR_01064 [Clostridium hiranonis DSM 13275]
Length = 233
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 14/224 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
++ +++I + A A R D + L+AV+K VD K+ A++ + ENK QE +K+
Sbjct: 8 IESIRKRIADVAKRAGRDADDIKLIAVTKTVDVDKVEEAIAADALDAGENKPQELARKYE 67
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L + ++ IGSLQ+NKV I+ +I ++ RE A + K R + +QV
Sbjct: 68 VLGDK--IRWHQIGSLQTNKVKYIIDKVCMIHSLDREGLAEEIDKRANKIGRVIDCLVQV 125
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPP---AMGNPKPHFYLLSEIAR 182
N E K G+ + + FV L +KY + ++GLM + P + F L E++
Sbjct: 126 NISGEESKHGMSREEVEPFVRLVAEKYPNIKIKGLMTMAPFDAERDEIRKVFRDLKELSD 185
Query: 183 E--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E ++ +LSMGMT DFE+A+ GAT VR+G+ IFG+R
Sbjct: 186 EINNMNIGNVEMNELSMGMTNDFEIAVEEGATMVRVGTAIFGKR 229
>gi|332878865|ref|ZP_08446580.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332683216|gb|EGJ56098.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 242
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 15/225 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+++ KQ+I + R + V L+ +K V ++I++AL G + AENK+QE K+K+
Sbjct: 8 IEIIKQRIAAACTRVGRKPEEVKLLLATKTVTPERIKIALKAGNTLIAENKIQELKEKYE 67
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRFLPVYI 124
L K+ FIG LQ+NK+ EI+ ++V +E+V R A L + + + L ++I
Sbjct: 68 AL-KDVPHTNHFIGHLQTNKIKEILR-YEVSCVESVDRIDLAQKLHNRLASEGKELDIFI 125
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAMGNPKPHFYLLSEIA 181
QVNT E K G P + D V Q L+++GLM I + F LL +
Sbjct: 126 QVNTSNEESKFGADPAEVLDLVKQVAQLPTLHIKGLMTIGLFSAETEKVRACFKLLKRLQ 185
Query: 182 RE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E +LSMGM+ D E AI GAT VR+G+ IFG+R
Sbjct: 186 QEIIALGLPNVDPQELSMGMSGDLETAIEEGATIVRVGTAIFGQR 230
>gi|170718483|ref|YP_001783697.1| alanine racemase [Haemophilus somnus 2336]
gi|168826612|gb|ACA31983.1| alanine racemase domain protein [Haemophilus somnus 2336]
Length = 244
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 118/233 (50%), Gaps = 19/233 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + N L ++I AKR +VSL+AVSK + I +A GQ F EN +QE
Sbjct: 15 MQIKNNLAKINRQISQYCEQAKRHSSTVSLLAVSKTKPVEDILIAYQAGQTAFGENYVQE 74
Query: 61 AKKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K I E +QL FIG LQSNK + FD ++T+ REK A+ L+ + +
Sbjct: 75 GVEK-IQYFIEQHIQLEWHFIGPLQSNKTKLVAENFDWMQTLDREKIATRLNEQRPHYKQ 133
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY---QLNVEGLMCIPPAMGNPKPHF- 174
L V IQ+N E KSGI P ++ +IL + L + GLM IP N
Sbjct: 134 PLNVLIQINISAENSKSGIQP---QEMLILAKHIQNLPHLRLRGLMAIPEPTDNITAQEQ 190
Query: 175 ------YLLSEIA---RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
YL +++ + K+ LSMGM+ D AI G+T VRIG+ IFG+R
Sbjct: 191 AFNQMKYLFTQLQLAFPDEKIDTLSMGMSDDMASAIKCGSTMVRIGTAIFGKR 243
>gi|121728581|ref|ZP_01681602.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|147673920|ref|YP_001215987.1| hypothetical protein VC0395_A0013 [Vibrio cholerae O395]
gi|153216285|ref|ZP_01950378.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|262167145|ref|ZP_06034859.1| hypothetical protein VIJ_000305 [Vibrio cholerae RC27]
gi|297580600|ref|ZP_06942526.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|121629137|gb|EAX61580.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|124114374|gb|EAY33194.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|146315803|gb|ABQ20342.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|227012314|gb|ACP08524.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|262024445|gb|EEY43132.1| hypothetical protein VIJ_000305 [Vibrio cholerae RC27]
gi|297535016|gb|EFH73851.1| conserved hypothetical protein [Vibrio cholerae RC385]
Length = 236
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 112/228 (49%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSGI P Q L + L + GLM IP + + S
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFS 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A + ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGER 230
>gi|254226314|ref|ZP_04919905.1| conserved hypothetical protein [Vibrio cholerae V51]
gi|125621176|gb|EAZ49519.1| conserved hypothetical protein [Vibrio cholerae V51]
Length = 236
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 113/228 (49%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L + L + GLM IP P F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGER 230
>gi|225572134|ref|ZP_03780998.1| hypothetical protein RUMHYD_00428 [Blautia hydrogenotrophica DSM
10507]
gi|225040400|gb|EEG50646.1| hypothetical protein RUMHYD_00428 [Blautia hydrogenotrophica DSM
10507]
Length = 244
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 115/227 (50%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ ++KIE + I + R V+L+AVSK + ++ A G F ENK+QE
Sbjct: 16 LSENLRDVEKKIEGACIRSGRNPKEVTLIAVSKTKPVEMLQEAYDAGAREFGENKVQEIT 75
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L + D+ IG LQ NKV IV +I +V + A + E K++ +PV
Sbjct: 76 AKYDQLPQ--DIHWHMIGHLQRNKVKYIVDKVKMIHSVDSLRLAETIDKEAQKKNVVVPV 133
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN E K G+ + + + + V+GLM + P + NP+ + + + +
Sbjct: 134 LIEVNVAEEDSKFGLSLEEVVSLIEAVSKLPNVRVQGLMTVAPFVENPEENREIFRSLKK 193
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 194 LSVDITAKNINNVTMSVLSMGMTNDYEVAIEEGATMVRVGTGIFGAR 240
>gi|239503167|ref|ZP_04662477.1| TIM-barrel fold family protein [Acinetobacter baumannii AB900]
Length = 230
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
Q+I+ + LA+R ++V L+AVSK S+++R + GQ F EN LQEA K I ++
Sbjct: 13 QQIKTACELAQRAPETVQLLAVSKTHPSERLREMYAAGQRAFGENYLQEALDK-IDALQD 71
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
D++ FIG +Q NK + FD + V R A LS + L + +QVN +
Sbjct: 72 LDIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQRGDDQAALNICLQVNIDGQ 131
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP-----AMGNPKPHFYLLS-EIARECK 185
K G P + V Q ++ + GLM IP A + K F + + A
Sbjct: 132 DSKDGCAPEDVAELVAQMSQLPKIKLRGLMVIPAPDNTGAFADAKKLFDAVKVQHAHPED 191
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 192 WDTLSMGMSGDLEAAIAAGSTMVRVGTALFGAR 224
>gi|145219349|ref|YP_001130058.1| alanine racemase domain-containing protein [Prosthecochloris
vibrioformis DSM 265]
gi|145205513|gb|ABP36556.1| alanine racemase domain protein [Chlorobium phaeovibrioides DSM
265]
Length = 232
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 117/222 (52%), Gaps = 10/222 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-AKKKW 65
LQ +Q+IE +A+ A R S+ L+AVSK + IR A G +F E+ LQE +K+
Sbjct: 8 LQNIQQRIEAAAVEAGRDPASIRLIAVSKTKPAGMIREAFDAGHSLFGESYLQEFLEKRT 67
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
PL + ++ FIG LQSNKV ++ +I + + TA LS + ++Q+ ++
Sbjct: 68 DPLLEGLPIEWHFIGHLQSNKVRSVIGKVSLIHGIDKISTARELSRQALRQNLHADYLLE 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSEIAREC 184
VNT E K G+ ++ + + GLM I P + + F L ++ ++
Sbjct: 128 VNTSGESTKYGMAEDEVLSAAETLFTLPSITLRGLMNIASPDEASARNEFRRLRQLLKQL 187
Query: 185 K--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L++LSMGM+ DFE A+ GAT +R+G+ IFG R
Sbjct: 188 REVAPNPEELSELSMGMSGDFESAVMEGATMIRVGTAIFGAR 229
>gi|239617209|ref|YP_002940531.1| alanine racemase domain protein [Kosmotoga olearia TBF 19.5.1]
gi|239506040|gb|ACR79527.1| alanine racemase domain protein [Kosmotoga olearia TBF 19.5.1]
Length = 218
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 120/211 (56%), Gaps = 14/211 (6%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
IL++ P D V++VA +K ++I A+ G I EN +QEA+K + + K+ Q
Sbjct: 10 ILSEIP-DYVTVVAAAKTRTPEEILEAIEAGIEIIGENYVQEAQKAFEAVGKK--AQWHM 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ NKV + V +FD+I+TV K A+ ++ + + +PV I+VN+G E QK+G++
Sbjct: 67 IGHLQKNKVKKAVQIFDMIQTVDSVKIANEINKRAAQFGKVMPVLIEVNSGREEQKAGVL 126
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE----IARE----CKLT 187
P V + + +EGLM + P + P +P+F L E ++RE ++
Sbjct: 127 PEDVFRLVEEISKLENIRIEGLMTMGPVVDAPEELRPYFSLTRELFENLSREKLPGVEMK 186
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ +++AI GA +R+G+ +FG R
Sbjct: 187 WLSMGMSDSYKIAIKEGANMIRLGTILFGPR 217
>gi|229512523|ref|ZP_04401994.1| hypothetical protein VCB_000163 [Vibrio cholerae TMA 21]
gi|229530303|ref|ZP_04419691.1| protein of unknown function [Vibrio cholerae 12129(1)]
gi|229332076|gb|EEN97564.1| protein of unknown function [Vibrio cholerae 12129(1)]
gi|229350416|gb|EEO15365.1| hypothetical protein VCB_000163 [Vibrio cholerae TMA 21]
Length = 236
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 113/228 (49%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L + L + GLM IP P F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGER 230
>gi|256425067|ref|YP_003125720.1| alanine racemase [Chitinophaga pinensis DSM 2588]
gi|256039975|gb|ACU63519.1| alanine racemase domain protein [Chitinophaga pinensis DSM 2588]
Length = 244
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 114/226 (50%), Gaps = 14/226 (6%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N L +I ++ + R V L+ +K V + IR+A+ G+ + ENK+QE + K
Sbjct: 7 NNLHTVHNRIAHACEKSGRNPADVRLLLATKTVFPEYIRIAIEAGERLIGENKVQEFRDK 66
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
L + V+ FIG LQ NKV +++ ++++ R A L + ++ R L V+I
Sbjct: 67 HEAL-SDLSVERHFIGHLQHNKVKDVLKYVSCVQSLDRLSIAQELDKRLQQEGRNLDVFI 125
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAMGNPKPHFYLLSEIA 181
QVNT YE K G+ P F+ + L V+GLM I +P LL +
Sbjct: 126 QVNTSYEESKFGLQPADVAGFIRELKSLDTLQVKGLMTIGLLDVDREKMRPSLTLLRQ-T 184
Query: 182 RECKLT---------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
RE + KLSMGM++D ++AIA GA VR+G+ IFG R
Sbjct: 185 REQLIAAGIENSDQFKLSMGMSQDLDMAIAEGADIVRVGTAIFGNR 230
>gi|15640488|ref|NP_230115.1| hypothetical protein VC0461 [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|153802601|ref|ZP_01957187.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|153823179|ref|ZP_01975846.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|229509065|ref|ZP_04398553.1| hypothetical protein VCE_000468 [Vibrio cholerae B33]
gi|229519733|ref|ZP_04409176.1| hypothetical protein VCC_003765 [Vibrio cholerae RC9]
gi|229606245|ref|YP_002876893.1| hypothetical protein VCD_001146 [Vibrio cholerae MJ-1236]
gi|254291172|ref|ZP_04961968.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|254850692|ref|ZP_05240042.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255744292|ref|ZP_05418245.1| hypothetical protein VCH_000603 [Vibrio cholera CIRS 101]
gi|262147283|ref|ZP_06028082.1| hypothetical protein VIG_000131 [Vibrio cholerae INDRE 91/1]
gi|12230811|sp|Q9KUQ4|Y461_VIBCH RecName: Full=UPF0001 protein VC_0461
gi|9654886|gb|AAF93634.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|124121864|gb|EAY40607.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|126519305|gb|EAZ76528.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|150422866|gb|EDN14817.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|229344422|gb|EEO09397.1| hypothetical protein VCC_003765 [Vibrio cholerae RC9]
gi|229353990|gb|EEO18924.1| hypothetical protein VCE_000468 [Vibrio cholerae B33]
gi|229368900|gb|ACQ59323.1| hypothetical protein VCD_001146 [Vibrio cholerae MJ-1236]
gi|254846397|gb|EET24811.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255738232|gb|EET93624.1| hypothetical protein VCH_000603 [Vibrio cholera CIRS 101]
gi|262031277|gb|EEY49892.1| hypothetical protein VIG_000131 [Vibrio cholerae INDRE 91/1]
gi|327483315|gb|AEA77722.1| Hypothetical protein YggS, proline synthase co- transcribed
bacterial-like protein PROSC [Vibrio cholerae LMA3894-4]
Length = 236
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 113/228 (49%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVNMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L + L + GLM IP P F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGER 230
>gi|154504399|ref|ZP_02041137.1| hypothetical protein RUMGNA_01903 [Ruminococcus gnavus ATCC 29149]
gi|153795328|gb|EDN77748.1| hypothetical protein RUMGNA_01903 [Ruminococcus gnavus ATCC 29149]
Length = 230
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 122/230 (53%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ +++I+ + A R ++ V+L+AVSK I G ++ ENK+QE
Sbjct: 2 LKEQLKEVERRIQAACDRAGRKREEVTLIAVSKTKPVSMIEETYQLGIHVYGENKVQELT 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ L K D++ IG LQ+NKV IV +I +V K A + E K++ +
Sbjct: 62 EKYEILPK--DIEWHMIGHLQTNKVKYIVGKTALIHSVDSLKLAETIEKEAAKKNCIQDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
++VN E K G+ ++ F+ Q + V+GLM I P + NP +P F L +
Sbjct: 120 LVEVNVAQEESKFGLKVDEVIPFIEKISQFQHICVKGLMTIAPFVENPDDNRPVFANLHK 179
Query: 180 IARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + ++ LSMGMT D+E+AI GAT VR+G+GIFG R Q
Sbjct: 180 LSVDIMNKNIDNVNVSILSMGMTNDYEVAIEEGATMVRVGTGIFGARNYQ 229
>gi|300703107|ref|YP_003744709.1| hypothetical protein RCFBP_10764 [Ralstonia solanacearum CFBP2957]
gi|299070770|emb|CBJ42067.1| conserved protein of unknown function, Predicted pyridoxal
phosphate-dependent enzyme [Ralstonia solanacearum
CFBP2957]
Length = 240
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 112/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ LQ +Q+I + +LA R SV+L+AVSK D+ +R A + GQ +F EN +QE
Sbjct: 4 IAANLQAVRQRITTACMLASRDPASVTLLAVSKTFDADAVRRAHAAGQRLFGENYVQEGI 63
Query: 63 KKWIPLRK----EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K L + FIG LQSNK + FD + +V R K A LS +
Sbjct: 64 AKIDALADLRSGPGAIGWHFIGPLQSNKTRAVAEHFDWVHSVDRLKIAERLSAQRPAGLP 123
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY--QLNVEGLMCIPPAMGN------P 170
L + +++N + K G+ P+ + +L + GLM +P G+ P
Sbjct: 124 PLQICLEINISRQASKHGVPPDADGVLALARAVAALPRLQLRGLMAVPEPAGDPAARRAP 183
Query: 171 KPHFYLLSEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L++ RE L LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 184 FAALRALADRLREAGLPIDTLSMGMSSDLEDAIAEGATIVRVGSAIFGAR 233
>gi|312129821|ref|YP_003997161.1| alanine racemase domain protein [Leadbetterella byssophila DSM
17132]
gi|311906367|gb|ADQ16808.1| alanine racemase domain protein [Leadbetterella byssophila DSM
17132]
Length = 244
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 15/225 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ V +++I N+ + R D V L+ +K V +++I++AL G + AENK+QE K+K+
Sbjct: 9 MAVIQERINNACKESNRNPDEVKLLLATKTVPAERIKIALQAGHTLIAENKVQELKEKYE 68
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRFLPVYI 124
L+ FIG LQ+NK+ E++ +DV I+++ R A L + + + + V +
Sbjct: 69 ALKGVSHTN-HFIGHLQTNKIKEVLK-YDVSCIQSLDRIDLAEKLQQRLEYEDKTIDVLV 126
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAMGNPKPHFYLLSEIA 181
QVNT E K G+ P+ V + +L ++GLM I + F LL I
Sbjct: 127 QVNTSNEESKFGVHPDNAIALVQQIARLDRLKIKGLMTIGLFSAETEKVRQCFKLLKNIQ 186
Query: 182 RE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E ++ +LSMGM+ D E AI GAT +R+G+ IFG+R
Sbjct: 187 QEIIALNIPDIQMKELSMGMSGDLETAIEEGATIIRVGTAIFGQR 231
>gi|193076643|gb|ABO11330.2| hypothetical protein A1S_0898 [Acinetobacter baumannii ATCC 17978]
Length = 230
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 111/222 (50%), Gaps = 7/222 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q Q+I + LA+R ++V L+AVSK S+++R + GQ F EN LQEA
Sbjct: 4 LQDARQHVLQQIRTACELAQRAPETVQLLAVSKTHPSERLREMYAAGQRAFGENYLQEAL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K I ++ D++ FIG +Q NK + FD + V R A LS + L +
Sbjct: 64 DK-IDALQDLDIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQCGDDQAALNI 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-----PAMGNPKPHFYLL 177
+QVN + K G P + V Q ++ + GLM IP A + K F +
Sbjct: 123 CLQVNIDGQESKDGCAPEDVAELVAQMSQLPKIKLRGLMVIPAPDNTAAFADAKKLFDAV 182
Query: 178 S-EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ A LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 183 KVQHAHPEDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGAR 224
>gi|152978475|ref|YP_001344104.1| alanine racemase domain-containing protein [Actinobacillus
succinogenes 130Z]
gi|150840198|gb|ABR74169.1| alanine racemase domain protein [Actinobacillus succinogenes 130Z]
Length = 232
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 110/229 (48%), Gaps = 11/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L+ Q+I + + A R K +V L+AVSK I+ A+ GQ F EN +QE
Sbjct: 1 MTIRQNLEHIHQQIGQACLAAGRDKSAVKLLAVSKTKPVTDIQAAIDAGQRAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K ++ +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQFFAHKYPELEWHFIGPLQSNKTRLVAEYFDWMQTLDRAKIADRLNDQRPADKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----------AMGN 169
L V IQ+N E KSGI P + + L + GLM IP A+
Sbjct: 121 LNVLIQINISDESSKSGIQPQEMAALAKHIENRPHLCLRGLMAIPAPTDDIAEQEKALTA 180
Query: 170 PKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K F L + + LSMGMT D A+ G+T VRIG+ IFG R
Sbjct: 181 MKKLFEQLQTLCPNRPIDTLSMGMTNDMASAVKCGSTMVRIGTAIFGAR 229
>gi|77918018|ref|YP_355833.1| PLP dependent enzymes class III-like protein [Pelobacter
carbinolicus DSM 2380]
gi|77544101|gb|ABA87663.1| PLP dependent enzymes class III-like protein [Pelobacter
carbinolicus DSM 2380]
Length = 228
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 115/233 (49%), Gaps = 21/233 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ LQ ++++ + R + V LVAVSK + I A + GQ +F EN +QE
Sbjct: 1 MSIQTNLQTIRERMNAACRRVNRNPEDVQLVAVSKTKPADMIEAAAAAGQSLFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQL----RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
L K DV + FIGSLQSNKV + +I +V R A + + K
Sbjct: 61 F------LTKTEDVTVPVVWHFIGSLQSNKVKYLCGKVAMIHSVDRLSLAKEIDRQWGKS 114
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPH 173
+ IQVN G E KSG +D V + + GLM +PP + +P +P
Sbjct: 115 GETAQILIQVNLGQEESKSGTEEAALEDLVRKVAALPHIRICGLMALPPYLDDPEQVRPF 174
Query: 174 FYLLSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L ++A ++ +LSMGM+ DF++AI GAT VR+GS IFG R
Sbjct: 175 FRRLRQLADMLAALNIPGVEMRELSMGMSHDFDVAIEEGATLVRVGSAIFGSR 227
>gi|169634028|ref|YP_001707764.1| hypothetical protein ABSDF2533 [Acinetobacter baumannii SDF]
gi|169152820|emb|CAP01843.1| conserved hypothetical protein [Acinetobacter baumannii]
Length = 235
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 111/222 (50%), Gaps = 7/222 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q Q+I + LA+R ++V L+AVSK S+++R + GQ F EN LQEA
Sbjct: 9 LQDARQHVLQQIRTACELAQREPETVQLLAVSKTHPSERLREMYAAGQRAFGENYLQEAL 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K I ++ D++ FIG +Q NK + FD + V R A LS + L +
Sbjct: 69 DK-IDALQDLDIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQRGDDQAALNI 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP-----AMGNPKPHFYLL 177
+QVN + K G P + V Q ++ + GLM IP A + K F +
Sbjct: 128 CLQVNIDGQESKDGCAPEDVAELVAQMSQLPKIKLRGLMVIPAPDNTGAFADAKKLFDAV 187
Query: 178 S-EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ A LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 188 KVQHAHPEDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGAR 229
>gi|73748569|ref|YP_307808.1| hypothetical protein cbdb_A730 [Dehalococcoides sp. CBDB1]
gi|147669329|ref|YP_001214147.1| alanine racemase domain-containing protein [Dehalococcoides sp.
BAV1]
gi|289432595|ref|YP_003462468.1| alanine racemase domain protein [Dehalococcoides sp. GT]
gi|73660285|emb|CAI82892.1| conserved hypothetical protein [Dehalococcoides sp. CBDB1]
gi|146270277|gb|ABQ17269.1| alanine racemase domain protein [Dehalococcoides sp. BAV1]
gi|288946315|gb|ADC74012.1| alanine racemase domain protein [Dehalococcoides sp. GT]
Length = 220
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 115/214 (53%), Gaps = 18/214 (8%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW--IPLRKEWDVQL 76
ILA+ P D V LVA K +I A++ G I N L EA++ + I + EW
Sbjct: 12 ILAELPPDVV-LVAAVKKRQPAEILAAIAAGVKIIGHNYLSEAEETYPFIGDKAEW---- 66
Query: 77 RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG 136
FIG LQSNK +IV LF V+ETV + AS L+ + + + V+I++N+G E QKSG
Sbjct: 67 HFIGKLQSNKCKKIVRLFSVVETVDSFEIASELNRRAAEIDKVMSVFIEINSGREKQKSG 126
Query: 137 IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL----LSEIA----RECK 185
++P +T + L + GLM + PA+ +P + F L EIA +
Sbjct: 127 VLPEETVELAKRISGLSNLKLAGLMTMGPALEDPEELRTIFRLTKIKFDEIAVMGLPNTE 186
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L LSMGM+ +++A+ G VR+G+ IFG RP
Sbjct: 187 LKFLSMGMSVSYKVAVQEGTNLVRLGTRIFGNRP 220
>gi|260555789|ref|ZP_05828009.1| TIM-barrel fold family protein [Acinetobacter baumannii ATCC 19606]
gi|260410700|gb|EEX03998.1| TIM-barrel fold family protein [Acinetobacter baumannii ATCC 19606]
Length = 235
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 111/222 (50%), Gaps = 7/222 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q Q+I + LA+R ++V L+AVSK S+++R + GQ F EN LQEA
Sbjct: 9 LQDARQHVLQQIRTACELAQRAPETVQLLAVSKTHPSERLREMYAAGQRAFGENYLQEAL 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K I ++ D++ FIG +Q NK + FD + V R A LS + L +
Sbjct: 69 DK-IDALQDLDIEWHFIGHVQRNKTKHLAEQFDWVHGVDRLIIAERLSNQRGDDQAALNI 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-----PAMGNPKPHFYLL 177
+QVN + K G P + V Q ++ + GLM IP A + K F +
Sbjct: 128 CLQVNIDGQESKDGCAPEDVAELVAQMSQLPKIRLRGLMVIPAPDNTAAFADAKKLFDAV 187
Query: 178 S-EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ A LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 188 KVQHAHPEDWDTLSMGMSGDLEAAIAAGSTMVRVGTALFGAR 229
>gi|291542657|emb|CBL15767.1| pyridoxal phosphate enzyme, YggS family [Ruminococcus bromii L2-63]
Length = 237
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 125/218 (57%), Gaps = 12/218 (5%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
++I +A + R ++ ++ +A +KMV+ + I A+S G ENK+QE K+ +
Sbjct: 18 ERIAEAAEKSGRKREDITFLAATKMVEPEVINHAISLGLDHIGENKVQELLSKYDKYNLD 77
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
+ L+FIG LQ+NKV +I+ D+I++V K AS +S + +K ++ V ++VN G E
Sbjct: 78 -NCSLQFIGHLQTNKVRQIIDKVDLIQSVDSIKLASEISKQALKINKNCDVLVEVNIGRE 136
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK--PHFY-----LLSEIARE- 183
KSG+MP Q ++ + + ++V+GLM IPP + + F+ + +I+++
Sbjct: 137 ENKSGVMPEQLEELLCQIAELDGISVKGLMAIPPICESSQKISEFFNKMHNIFIDISQKK 196
Query: 184 ---CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ D+ A+ +GA VR+GS +FG R
Sbjct: 197 LDNIDMNILSMGMSADYYEAVLAGANMVRVGSALFGAR 234
>gi|89895634|ref|YP_519121.1| hypothetical protein DSY2888 [Desulfitobacterium hafniense Y51]
gi|89335082|dbj|BAE84677.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 233
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 13/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L +Q+I+ +A+ + R ++ L+AVSK + + ++ A GQ FAEN++QE
Sbjct: 1 MDIYGSLSAVRQRIQQAAVKSGRDPSAIKLLAVSKTMSAGTVQRAYEAGQRSFAENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L + D + IG LQ+NKV + ++I ++ R L + +++
Sbjct: 61 WQDKVTQLPE--DCEWHLIGRLQTNKVKYLDERINLIHSLDRLSLLETLESQGAQRNIIW 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP------HF 174
P +QVN + QK+G++ + +DF+ + V GLM I +P+
Sbjct: 119 PTLVQVNIARDSQKAGLLAEEVEDFLREAAGCQHIQVYGLMTIGALGASPEDTQGFFREL 178
Query: 175 YLLSEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL E ++ L +LSMGM++DFE AI G+T +R+G IFGER
Sbjct: 179 RLLKERLQQKNLPHVNLKELSMGMSQDFEWAIQEGSTIIRVGRQIFGER 227
>gi|184157169|ref|YP_001845508.1| TIM-barrel fold family protein [Acinetobacter baumannii ACICU]
gi|332874170|ref|ZP_08442094.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter baumannii
6014059]
gi|183208763|gb|ACC56161.1| predicted enzyme with a TIM-barrel fold [Acinetobacter baumannii
ACICU]
gi|322507066|gb|ADX02520.1| TIM-barrel fold family protein [Acinetobacter baumannii 1656-2]
gi|323516933|gb|ADX91314.1| TIM-barrel fold family protein [Acinetobacter baumannii
TCDC-AB0715]
gi|332737645|gb|EGJ68548.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter baumannii
6014059]
Length = 230
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 111/222 (50%), Gaps = 7/222 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q Q+I + LA+R ++V L+AVSK S+++R + GQ F EN LQEA
Sbjct: 4 LQDARQHVLQQIRTACELAQRAPETVQLLAVSKTHPSERLREMYAAGQRAFGENYLQEAL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K I ++ D++ FIG +Q NK + FD + V R A LS + L +
Sbjct: 64 DK-IDALQDLDIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQRGDDQAALNI 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP-----AMGNPKPHFYLL 177
+QVN + K G P + V Q ++ + GLM IP A + K F +
Sbjct: 123 CLQVNIDGQESKDGCAPEDVAELVAQMSQLPKIKLRGLMVIPAPDNTGAFADAKKLFDAV 182
Query: 178 S-EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ A LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 183 KVQHAHPEDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGAR 224
>gi|311108932|ref|YP_003981785.1| alanine racemase [Achromobacter xylosoxidans A8]
gi|310763621|gb|ADP19070.1| alanine racemase, N-terminal domain protein 2 [Achromobacter
xylosoxidans A8]
Length = 280
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 113/227 (49%), Gaps = 17/227 (7%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +I ++A+ A R +V L+ VSK V+ +IR+A G ENKLQE +KW
Sbjct: 34 NLAAVNGRIADAALRAGRDPATVRLLPVSKTVEEARIRLAYEAGCRYLGENKLQEVSRKW 93
Query: 66 IPLRKEWDVQLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ D++ IG LQ+NK V+ + F ++++ + A L + + R L V
Sbjct: 94 EAMADLTDLRWSVIGHLQTNKAKLVARYAAEFQALDSL---RVAEALDRRLQAEGRQLDV 150
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSE 179
++QVNT E K G+ P +T F+ L V GLM + + F LL
Sbjct: 151 FVQVNTSGEASKYGLQPEETAAFLRELPAFSGLRVRGLMTLALFSAEAARVRECFVLLRT 210
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + L +LSMGM+ D+E+AI GAT VR+G IFG R
Sbjct: 211 LRDQLRQEAPAGIGLDELSMGMSGDYEIAIEEGATVVRVGQAIFGAR 257
>gi|322827132|gb|EFZ31435.1| hypothetical protein TCSYLVIO_2251 [Trypanosoma cruzi]
Length = 252
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 115/220 (52%), Gaps = 21/220 (9%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL 76
A RP V+LVAVSK ++ CG F EN +QE +K L K D+Q
Sbjct: 27 DAASGGRP---VTLVAVSKTKSPACVQALYDCGHRCFGENYVQELVEKAGVLPK--DIQW 81
Query: 77 RFIGSLQSNKVSEIVSLFD---VIETVSREKTASLLSLEMI--KQSRFLPVYIQVNTGYE 131
FIG LQSNKV E++ D +++TV EK A+ L+ + + R L VYIQVNT E
Sbjct: 82 HFIGHLQSNKVKELLEGVDGLYLVQTVDSEKLATKLNNGCVTYRGGRSLNVYIQVNTSGE 141
Query: 132 IQKSGIMP-NQTKDFVILCRQKY-QLNVEGLMCI--PPAMGNPKPHFYLL---SEIAREC 184
KSG P NQT + ++ LNV G+M I P P+ LL +AR
Sbjct: 142 ESKSGTEPGNQTVELAQYIQEHCKHLNVAGVMTIGMPDYTSRPENFECLLQVREAVARAL 201
Query: 185 KLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGMT DFE AI G+T VR+G+ +FG+R C
Sbjct: 202 SVPADSLALSMGMTGDFENAIKMGSTVVRVGTALFGKRYC 241
>gi|319778671|ref|YP_004129584.1| Hypothetical protein YggS [Taylorella equigenitalis MCE9]
gi|317108695|gb|ADU91441.1| Hypothetical protein YggS [Taylorella equigenitalis MCE9]
Length = 233
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 119/229 (51%), Gaps = 11/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
++L + +Q++ + A R SV+++ V+K IR+A+ G FAENK QE
Sbjct: 2 ITLAENFRALEQRVNEACKQAGREPGSVNILPVTKTFSPDTIRMAIDLGYHRFAENKAQE 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+K I L+ +Q IG LQ+NK E+ + I+++ R + A L + + +
Sbjct: 62 LKEKAIELQDYDQLQWVIIGYLQTNKSKEVATYASEIQSLDRIELAKALDNRLQAAGKSI 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVEGLMCIPPAMGNP---KPHFY 175
+QV T E+ K+G+ ++ F+ ++ L+++G M I N + F
Sbjct: 122 KALVQVKTSPEVSKTGLEISEVPAFLNDLKESGIQTLDLQGFMTIAENTENQDDIRKCFS 181
Query: 176 LLSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E+A C+ L +LSMGM+ DFE+AI GAT +RIG +FGER
Sbjct: 182 SLRELAERCRDITGLALPQLSMGMSGDFEIAIQEGATEIRIGHALFGER 230
>gi|256821443|ref|YP_003145406.1| alanine racemase domain-containing protein [Kangiella koreensis DSM
16069]
gi|256794982|gb|ACV25638.1| alanine racemase domain protein [Kangiella koreensis DSM 16069]
Length = 227
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 104/202 (51%), Gaps = 9/202 (4%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
K +V VAVSK + IR A + G F EN++QEA K I + ++ IG +QS
Sbjct: 26 KHNVLFVAVSKRHPADSIREAYAAGHRDFGENQVQEALDK-ISQLSDLNINWHMIGVIQS 84
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
K +I FD +++V R K A L+ + L V IQVN E QK+G+ + K
Sbjct: 85 RKCKDIAQHFDWVQSVDRLKVAQKLNQHREQDQSPLNVLIQVNLFGESQKAGVNAAECKK 144
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSMGMTRD 196
Q +L + GLM +PP +P+ F I A +L LSMGM+ D
Sbjct: 145 LAHEIMQLPRLKLRGLMALPPKQTDPQTQFQQFERIHSVYQELQAEYPQLDTLSMGMSGD 204
Query: 197 FELAIASGATSVRIGSGIFGER 218
+E AI +G+T +R+G+ IFGER
Sbjct: 205 YEPAILAGSTMIRLGTAIFGER 226
>gi|217969412|ref|YP_002354646.1| alanine racemase [Thauera sp. MZ1T]
gi|217506739|gb|ACK53750.1| alanine racemase domain protein [Thauera sp. MZ1T]
Length = 271
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 108/234 (46%), Gaps = 27/234 (11%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
NKL + +I+ + A R V L+ VSK +R+A + G + ENK+QEA +K
Sbjct: 28 NKLAAVRARIDAACRRAGRDPADVRLLPVSKTKPEASVRMAYAAGCRMLGENKVQEAHRK 87
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
W + ++ IG LQ+NK + D + + + A L + + R L V++
Sbjct: 88 WEATQDLGGLRWSIIGHLQTNKARMVARFADEFQALDSLRVAEALERRLQVEGRSLDVFV 147
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVNT E K G+ P FV L V GLM + A+ F +E R+C
Sbjct: 148 QVNTSGEASKYGLAPEDVPGFVRALPAFSALRVRGLMTL--AL------FSSEAERVRQC 199
Query: 185 -------------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +LSMGM+ DFE+AI GAT VR+G +FG RP
Sbjct: 200 FILLRTLRDRLRQSAPTGIGLDELSMGMSDDFEIAIEEGATVVRVGQALFGARP 253
>gi|207721650|ref|YP_002252089.1| alanine racemase [Ralstonia solanacearum MolK2]
gi|206586811|emb|CAQ17396.1| ipr001608 alanine racemase, n-terminal protein [Ralstonia
solanacearum MolK2]
Length = 240
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 110/230 (47%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ LQ +Q+I + LA R SV+L+AVSK D+ +R A + GQ +F EN +QE
Sbjct: 4 IAANLQAVRQRITTACTLASRDPASVTLLAVSKTFDADAVRRAHAAGQRLFGENYVQEGI 63
Query: 63 KKWIPL----RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K L + FIG LQSNK + FD + +V R K A LS +
Sbjct: 64 AKIDALADLRNGPGAIGWHFIGPLQSNKTRAVAEHFDWVHSVDRLKLAERLSAQRPAGLP 123
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQT--KDFVILCRQKYQLNVEGLMCIPPAMGN------P 170
L V +++N + K G+ P+ +L + GLM +P G+ P
Sbjct: 124 PLQVCLEINISRQASKHGVPPDADGILALARAVAALPRLQLRGLMAVPEPAGDPAARRAP 183
Query: 171 KPHFYLLSEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L++ RE L LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 184 FAALRTLADRLREAGLPIDTLSMGMSADLEDAIAEGATIVRVGSAIFGAR 233
>gi|309781317|ref|ZP_07676053.1| pyridoxal phosphate enzyme, YggS family [Ralstonia sp. 5_7_47FAA]
gi|308919730|gb|EFP65391.1| pyridoxal phosphate enzyme, YggS family [Ralstonia sp. 5_7_47FAA]
Length = 238
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 117/230 (50%), Gaps = 20/230 (8%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK- 64
LQ +Q+I + LA R V+L+AVSK D+ IR A + GQ +F EN +QE K
Sbjct: 7 NLQAVRQRITTACTLASRDAAGVTLLAVSKTFDADAIRAAHAAGQRLFGENYVQEGIAKI 66
Query: 65 --WIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
LR D ++ FIG LQSNK + FD + +V R K A LS + L
Sbjct: 67 DALADLRTGIDPIRWHFIGPLQSNKTRAVAEQFDWVHSVDRLKIAERLSAQRPDTLPPLQ 126
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY----QLNVEGLMCIPPAMGNP----KPH 173
V +++N + K G++P+ D V+ Q +L + GLM +P +P KP
Sbjct: 127 VCLEINISRQASKHGLLPD--FDEVLAVAQAVSALPRLQLRGLMAVPEPSDDPAAQRKP- 183
Query: 174 FYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L +A + L LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 184 FADLCALANRLREAGIPLDTLSMGMSADLEDAIAEGATIVRVGSAIFGAR 233
>gi|239996730|ref|ZP_04717254.1| alanine racemase domain protein [Alteromonas macleodii ATCC 27126]
Length = 228
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 111/225 (49%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L ++ I+ +A A RP +SV L+AVSK I A GQ +F EN +QE
Sbjct: 3 TIAERLDSARKGIDQAATSAHRPPNSVKLLAVSKTKPVSDIMEAYDAGQRMFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L D++ IG +QSNK + FD +++V REK A L+ + L
Sbjct: 63 VEKVQELSHLSDIEWHMIGPIQSNKTKVVAEHFDWVQSVDREKIARRLNEQRPDSMPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
V IQVN E KSG+ ++ V + L + GLM IP A + + LS++
Sbjct: 123 VCIQVNIDDEESKSGVALSELDALVEFINSQKHLTLRGLMAIPKADPSEEQQRATLSKLK 182
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LS+GM+ D AI G+T VRIG+ IFG+R
Sbjct: 183 ELFDHYHTSLSNFDTLSVGMSSDMTEAIQHGSTMVRIGTAIFGKR 227
>gi|118602272|ref|YP_903487.1| hypothetical protein Rmag_0234 [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|118567211|gb|ABL02016.1| Protein of unknown function UPF0001 [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
Length = 212
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 104/191 (54%), Gaps = 1/191 (0%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V+L+AVSK +++ A++ GQ FAEN LQEA K L+ + ++ FIG +QSNK
Sbjct: 22 VTLIAVSKTRSVDELQQAINTGQKHFAENYLQEALIKINHLKGQ-NLIWHFIGPIQSNKT 80
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
+I FD + +V R K A L+ + K L V +Q+N E KSG Q + V
Sbjct: 81 LKIAKNFDWVHSVDRLKIAKRLNEQRPKNLPNLKVLLQINIDNEPIKSGASIEQIDELVT 140
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATS 207
L + G MCIP + + + S I + L LSMGM+RD E AI +GAT
Sbjct: 141 HFESLKNLTLRGFMCIPNPSNSAQNFTRMTSIIKQYPNLDALSMGMSRDLESAITNGATF 200
Query: 208 VRIGSGIFGER 218
+RIG+ IFG+R
Sbjct: 201 LRIGTDIFGKR 211
>gi|317401303|gb|EFV81943.1| hypothetical protein HMPREF0005_01116 [Achromobacter xylosoxidans
C54]
Length = 239
Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 116/227 (51%), Gaps = 17/227 (7%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L +Q+I + A R DSV+L+ VSK + IR A++ G F ENK QE ++K
Sbjct: 10 RLAAIRQRIAQACERAGRAPDSVTLLPVSKTFEVDAIREAMALGLARFGENKTQELRQKA 69
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L + +Q IG LQ+NK + ++++ R A L ++ + R L V +Q
Sbjct: 70 AALAGQG-LQWVLIGHLQTNKAKDAARDATELQSLDRIDLAEALHRRLVLEGRTLDVLVQ 128
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGNPKPH-----FYLLSE 179
V T E K G+ P+ F+ ++ L V GLM + A+ +P P F L E
Sbjct: 129 VKTSSEPSKYGMAPSDVSAFLRRIVAEFPTLRVRGLMTM--AVNSPDPGEVRACFRSLRE 186
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + L +LSMGM+ DFELAI G+T VRIG+ IFG R
Sbjct: 187 LRDQLRHEAIEGVSLDRLSMGMSGDFELAIEEGSTEVRIGTAIFGAR 233
>gi|312127594|ref|YP_003992468.1| alanine racemase domain-containing protein [Caldicellulosiruptor
hydrothermalis 108]
gi|311777613|gb|ADQ07099.1| alanine racemase domain protein [Caldicellulosiruptor
hydrothermalis 108]
Length = 233
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 115/230 (50%), Gaps = 16/230 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L ++ ++IE + I A R VSL+ +K VD + I++A G IF EN++QE
Sbjct: 6 TLKKNIEDVMERIERACIKAGRKPGEVSLLGATKGVDVETIKLANQFGLKIFGENRVQEF 65
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L EW FIG LQ+NK+ I +I ++ + L K +
Sbjct: 66 LPKFQELPYLEW----HFIGRLQTNKIKYIYDKISLIHSIDSPQQIDELEKRCAKAGKMC 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V I++N G E K GI P + + R + ++G M IPP + + +F +
Sbjct: 122 SVLIEINIGGEESKGGINPEKVDHLIEKIRNCPHIILKGFMTIPPIEDDEMKLRGYFRKM 181
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
EI + K + LSMGM+ DFE+AI GAT VRIG+ IFGERP
Sbjct: 182 KEIFEKYKKLNYNNVNIEVLSMGMSGDFEVAIEEGATLVRIGTKIFGERP 231
>gi|291522267|emb|CBK80560.1| pyridoxal phosphate enzyme, YggS family [Coprococcus catus GD/7]
Length = 230
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 108/212 (50%), Gaps = 13/212 (6%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R +D V+L+AVSK I L+ G + + ENK+QE K+ L K +++ IG
Sbjct: 20 AGRSRDEVTLIAVSKTKPVSDIEEVLTTGILDYGENKVQELSDKYEVLPK--NIRWHMIG 77
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
LQ NKV ++ +I +V + A + E K +PV I+VN E K G
Sbjct: 78 HLQRNKVKYLIGKVVLIHSVDSLRLAEQIEHEAAKADIVMPVLIEVNVAEEESKFGTTSE 137
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECK--------LTKL 189
V + + + GLM I P NP+ +F L +++ + K + +L
Sbjct: 138 AAMQLVEAVSKLPHIKIRGLMTIAPFTDNPEDNRIYFRKLKQLSVDIKSKNIDNVDMDEL 197
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
SMGMT D+E+AI GAT VR+G+GIFG+R Q
Sbjct: 198 SMGMTGDYEVAIEEGATMVRVGTGIFGKRNYQ 229
>gi|262373214|ref|ZP_06066493.1| conserved hypothetical protein [Acinetobacter junii SH205]
gi|262313239|gb|EEY94324.1| conserved hypothetical protein [Acinetobacter junii SH205]
Length = 233
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 115/220 (52%), Gaps = 8/220 (3%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+++QV Q IE + + +R ++V L+AVSK S +R + GQ F EN LQEA K
Sbjct: 12 SRMQVLSQ-IEQACLRVQRDPNTVQLLAVSKTHPSLSLREMYAVGQRSFGENYLQEALPK 70
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
I ++ D++ FIG +Q NK + FD + V R A LS + ++ + L + +
Sbjct: 71 -IEELQDLDIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSSQRLETQKLLNICL 129
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-----PAMGNPKPHFYLLSE 179
QVN + K G PN+ + V + L + GLM IP A + K F +
Sbjct: 130 QVNIDGQDSKDGCEPNEVAELVEQISRLPNLRLRGLMVIPAPNNVAAFADAKNLFDQVKS 189
Query: 180 I-ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ A+ LSMGM+ D + AIA+G+T VR+G+ +FG R
Sbjct: 190 LHAQPQDWDTLSMGMSADLDAAIAAGSTMVRVGTALFGAR 229
>gi|229824759|ref|ZP_04450828.1| hypothetical protein GCWU000182_00107 [Abiotrophia defectiva ATCC
49176]
gi|229791088|gb|EEP27202.1| hypothetical protein GCWU000182_00107 [Abiotrophia defectiva ATCC
49176]
Length = 231
Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 115/229 (50%), Gaps = 13/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L + + KI + A R +D V L+AVSK + IR A+ G F EN++QE
Sbjct: 1 MSITENLSMVENKIAAACKRAGRERDEVKLIAVSKTQPVEAIREAIEYGINSFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K ++ D L IG LQ+NKV +V +I ++ + A L E K +
Sbjct: 61 LREKTEIIKDNLDWHL--IGHLQTNKVKYVVGKVSLIHSLENIRLAEALDKEAAKLGITV 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYLL 177
V ++N E K G+ P ++F+ + +N++GLM + P + +F L
Sbjct: 119 DVLAEINVAKEASKFGVNPEDAENFIREVSKFPNINIKGLMTVAPYTDISEENRKYFRQL 178
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+I + LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 179 KKIMVDLNSKNIHNVSMNVLSMGMTGDYEVAIEEGATLVRVGTGIFGSR 227
>gi|320163280|gb|EFW40179.1| alanine racemase [Capsaspora owczarzaki ATCC 30864]
Length = 280
Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 115/216 (53%), Gaps = 30/216 (13%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQ 83
D+V LVAVSK + ++ A GQ F EN +QE AK +P D+Q FIG LQ
Sbjct: 64 DAVRLVAVSKTKPNALLQAAYGAGQRHFGENYVQELVAKASGLP----RDIQWHFIGHLQ 119
Query: 84 SNKVSEIVSLFD--VIETVSREKTASLLSLEMIKQSRFLP--VYIQVNTGYEIQKSGIMP 139
SNK S + ++ + V+ETV K A+ L KQ+R P V++QVNT E KSG
Sbjct: 120 SNKASHVAAIPNLFVVETVDSVKLATALEKACAKQTRDSPLRVFVQVNTSGETSKSG--- 176
Query: 140 NQTKDFVILCRQKY----QLNVEGLMCIPP-----AMGNPKPHFYLLSEIARECKLT--- 187
+ + + + R L + GLM I + +P P F LL+EI ++ +
Sbjct: 177 SNAAEAIAVARHIVNECPHLRLCGLMTIGQPGRQCSEASPNPDFLLLNEIRQQTAESLSL 236
Query: 188 -----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LS GM+ DFE AI+ G+T++R+GS IFG R
Sbjct: 237 RAADLELSFGMSDDFEHAISMGSTNIRVGSTIFGSR 272
>gi|330963808|gb|EGH64068.1| hypothetical protein PSYAC_04056 [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 228
Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 106/224 (47%), Gaps = 10/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ AKR SV L+ VSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAAKRDPASVGLLGVSKTKPAGDLREAYTAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + L D+ L FIG +QSNK I F + +V R K A LS +
Sbjct: 63 LGKQLELA---DLPLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPAGLEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN E KSG P +L + GLM IP +P +
Sbjct: 120 LNICIQVNVSGEASKSGCAPQDLPALAAAISALPRLKLRGLMAIPEPTDDPAAQAASFAA 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLNLSLDTLSMGMSHDLEAAIAQGATWVRIGTALFGAR 223
>gi|153828401|ref|ZP_01981068.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|148876110|gb|EDL74245.1| conserved hypothetical protein [Vibrio cholerae 623-39]
Length = 236
Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 113/228 (49%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRDFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVNMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L + L + GLM IP P F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGER 230
>gi|148657357|ref|YP_001277562.1| alanine racemase domain-containing protein [Roseiflexus sp. RS-1]
gi|148569467|gb|ABQ91612.1| alanine racemase domain protein [Roseiflexus sp. RS-1]
Length = 244
Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 121/239 (50%), Gaps = 25/239 (10%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++L++ +++I +A A R ++ LV V+K + IR AL G EN++QEA+ K
Sbjct: 6 DRLRIVRERIAAAAQRAHRDPATIRLVGVTKAQPVEAIRTALDAGLCEIGENRVQEAEAK 65
Query: 65 WIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL---SLEMIKQ-SRF 119
L E + + IG LQ+NK + +LFD++ +V + A + + E+ + R
Sbjct: 66 MTALEAERYRLTWHLIGHLQTNKAKKAATLFDMVHSVDSLRLAQAINRYAAEVRRDPGRR 125
Query: 120 LPVYIQVNTGYEIQKSGI-------MPNQTKDFVILCRQKY---QLNVEGLMCIPPAMGN 169
LP+ +QVN E KSG P+ + F Q L+V GLM I P +
Sbjct: 126 LPILLQVNVSGEATKSGFDLYGWETQPDVYERFCADVEQILALPHLDVRGLMTIAPWAPD 185
Query: 170 P---KPHFY----LLSEIARECKLT---KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L +A+ + LSMGMT DFE+AI GAT VRIG IFGER
Sbjct: 186 PEAARPVFRATRRLRDALAQRFPIAPWRDLSMGMTDDFEVAIEEGATIVRIGRAIFGER 244
>gi|261210038|ref|ZP_05924336.1| hypothetical protein VCJ_000280 [Vibrio sp. RC341]
gi|260840803|gb|EEX67345.1| hypothetical protein VCJ_000280 [Vibrio sp. RC341]
Length = 236
Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 114/232 (49%), Gaps = 19/232 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + +V L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSTVQLLAVSKTKPVEAILEATQAGQRCFGENYVQEG 62
Query: 62 KKK-------WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
K + L EW FIG LQSNK + FD + T+ REK A L+ +
Sbjct: 63 VDKIRYFAEQYPQLALEW----HFIGPLQSNKTRLMAEHFDWVHTIEREKIAVRLNEQRP 118
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPK 171
+ L V IQVNT E KSGI P Q L + L + GLM IP P
Sbjct: 119 ADMQPLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQL 178
Query: 172 PHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 179 AAFTQLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGER 230
>gi|134093571|ref|YP_001098646.1| hypothetical protein HEAR0290 [Herminiimonas arsenicoxydans]
gi|133737474|emb|CAL60517.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
Length = 234
Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 108/223 (48%), Gaps = 11/223 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ +Q+I ++A A+R V L+AVSK + + A GQ F EN LQEA K
Sbjct: 8 LQAVRQRITDAANSAQRDVHEVELLAVSKTFGADAVLAAAEAGQRAFGENYLQEALDKMD 67
Query: 67 P---LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
+R + ++ FIG +QSNK I FD + V REK A LS + L +
Sbjct: 68 AVRAIRPDLPLEWHFIGPVQSNKTRPIAEHFDWVHAVDREKIAHRLSEQRPATLPPLNIC 127
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVN E KSG +P + L + GLM IP + + F+ L +
Sbjct: 128 LQVNISGEASKSGALPADAPGLAKAIAKLPHLRLRGLMAIPEPEDDEVRQRRSFHQLRVL 187
Query: 181 ARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + L LSMGM+ D AIA GAT VRIGS IFG R
Sbjct: 188 YEQLRAEGLPLDTLSMGMSADMPAAIAEGATIVRIGSAIFGTR 230
>gi|91776460|ref|YP_546216.1| hypothetical protein Mfla_2108 [Methylobacillus flagellatus KT]
gi|91710447|gb|ABE50375.1| Protein of unknown function UPF0001 [Methylobacillus flagellatus
KT]
Length = 241
Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 109/225 (48%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++G + Q K +I +A+ A R DSVSL+AVSK + +R GQ F EN LQEA
Sbjct: 9 TIGKRWQAIKARIRAAALDAGRAPDSVSLLAVSKAHPASAMRELFLAGQRQFGENYLQEA 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L ++ ++ FIG +QSNK I F + +V R K A L+ L
Sbjct: 69 LAKQEQL-QDLAIEWHFIGPIQSNKTQPIAQHFHWVHSVDRAKIADRLNAAREPGQTALQ 127
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V IQVN E KSG RQ +L + GLM IP +P + F +
Sbjct: 128 VCIQVNVSGESSKSGTSAADAIALADHIRQLPKLRLRGLMAIPAPTDDPQEQRSQFRAVR 187
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I + L LSMGM+ DF AI GAT VR+GS IFG R
Sbjct: 188 NIYDRLQSAGHDLDTLSMGMSEDFPAAIQEGATIVRVGSAIFGAR 232
>gi|163857208|ref|YP_001631506.1| hypothetical protein Bpet2896 [Bordetella petrii DSM 12804]
gi|163260936|emb|CAP43238.1| conserved hypothetical protein [Bordetella petrii]
Length = 260
Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 110/229 (48%), Gaps = 21/229 (9%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L ++ I + A R V L+ VSK VD +IR+A + G ENK+QEA KW
Sbjct: 19 NLARVREHIAAACQRAGRDPAEVRLLPVSKTVDEARIRLAYAAGCRELGENKVQEAHAKW 78
Query: 66 IPLRKEWDVQLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ D++ IG LQ+NK V+ S F ++++ + A L + + R L V
Sbjct: 79 EAMADLPDLRWAVIGHLQTNKAKLVARFASEFQALDSL---RVAEALDRRLQAEGRALDV 135
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF-------- 174
++QVNT E K G+ P Q FV L V GLM + A+ +P P
Sbjct: 136 FVQVNTSNEASKFGLPPEQAAAFVRELPAYSSLRVRGLMTL--ALFSPDPALVRPCFVRL 193
Query: 175 -----YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E + +LSMGM+ D+ LAI GAT+VR+G IFG R
Sbjct: 194 RELRDRLRQEAPAGIAIDELSMGMSGDYALAIEEGATTVRVGQAIFGAR 242
>gi|229525152|ref|ZP_04414557.1| hypothetical protein VCA_002763 [Vibrio cholerae bv. albensis
VL426]
gi|229338733|gb|EEO03750.1| hypothetical protein VCA_002763 [Vibrio cholerae bv. albensis
VL426]
Length = 236
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 112/228 (49%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ IE++ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAHIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRCFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L + L + GLM IP P F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGER 230
>gi|283853447|ref|ZP_06370691.1| alanine racemase domain protein [Desulfovibrio sp. FW1012B]
gi|283571167|gb|EFC19183.1| alanine racemase domain protein [Desulfovibrio sp. FW1012B]
Length = 228
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 113/231 (48%), Gaps = 18/231 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS +L K++IE + R V+LVAVSK D+ + +CGQ +F E+ +QE
Sbjct: 1 MSAEGRLAGVKKRIEEACRRGGRDPAEVTLVAVSKFHDAAAVAELAACGQTVFGESYIQE 60
Query: 61 A--KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
A K + P W FIG LQ NK + F +I T+ + A LL + +Q
Sbjct: 61 ALPKMEAGPAGLTW----HFIGHLQRNKGKLAIGRFALIHTLDNLELARLLQKKTGEQG- 115
Query: 119 FLP--VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPH 173
P V +QVN E QKSG+ P L++ GLM +PP +P +P
Sbjct: 116 LAPQAVCLQVNVAGEAQKSGVSPEGLPALAEAVAAMPALSLSGLMVLPPVFDDPDGARPA 175
Query: 174 FYLLSEI-----AR-ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L E+ AR L LSMGM+ D E AI GAT VR+G+ +FG R
Sbjct: 176 FARLRELRDGLAARLGLALPVLSMGMSGDLEAAILEGATHVRVGTDLFGPR 226
>gi|320538009|ref|ZP_08037914.1| pyridoxal phosphate enzyme, YggS family [Treponema phagedenis
F0421]
gi|320145166|gb|EFW36877.1| pyridoxal phosphate enzyme, YggS family [Treponema phagedenis
F0421]
Length = 232
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 22/228 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW- 65
++ K++I + A R V L+ +K + I A CG+++ ENK+QE +K+
Sbjct: 8 IEEVKRRIAEACARAGRDPSEVKLLMATKTIAPDWILQAFECGELLIGENKVQELAEKYE 67
Query: 66 ----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+P R FIG LQ+NK+ +++ D IE+V R A L+ + + + +
Sbjct: 68 ALSAVPHRA------HFIGHLQTNKIKDVIQYADCIESVDRFDLAEKLARRLRFEGKTID 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V IQVNT E KSG P + + L ++GLM I + + + LL
Sbjct: 122 VLIQVNTSAEETKSGCAPEEALSLIKQVSAFPDLRIKGLMTIGLFSSDTEKVRACYRLLK 181
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I +C ++ LSMGM+ DFE+AI G+T VR+G+ IFGER
Sbjct: 182 NIQEDCIKLALPNVEMAVLSMGMSGDFEIAIEEGSTEVRVGTSIFGER 229
>gi|262164087|ref|ZP_06031826.1| hypothetical protein VMA_000528 [Vibrio mimicus VM223]
gi|262027615|gb|EEY46281.1| hypothetical protein VMA_000528 [Vibrio mimicus VM223]
Length = 236
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 112/228 (49%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRCFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + ++ ++ FIG LQSNK + FD + T+ REK A L+ +
Sbjct: 63 VDKIRYFAEHHPQFALEWHFIGPLQSNKTRLVAEHFDWVHTIEREKIAVRLNEQRPADMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L L + GLM IP P F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPEQLFTLAELISGLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+E+ ++ + LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPHIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGER 230
>gi|109900019|ref|YP_663274.1| hypothetical protein Patl_3718 [Pseudoalteromonas atlantica T6c]
gi|109702300|gb|ABG42220.1| Protein of unknown function UPF0001 [Pseudoalteromonas atlantica
T6c]
Length = 227
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 113/225 (50%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L++ + I S A RP +SV L+AV+K I A G +F EN +QE
Sbjct: 3 TIAERLKIALKTITQSVCDANRPANSVKLLAVTKTKPVSDIVQAYEAGHRLFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K LR+ D++ FIG LQSNK + FD + ++ R K A L+ + + L
Sbjct: 63 VGKIQQLRELSDIEWHFIGPLQSNKTRPVAENFDWVHSIDRLKIAQRLNDQRSAHKK-LN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V IQVN E K+G+ ++ L + GLM IP A N + +++
Sbjct: 122 VCIQVNVDNESSKAGVAVDEVSTLAEQISVMPNLALRGLMTIPKAQQNDGMQRKSLLVMN 181
Query: 179 EI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + ++ LSMGM+ D +LAI G+T VRIGS IFG R
Sbjct: 182 ELFLQLQTKYPQIDTLSMGMSNDMQLAIECGSTMVRIGSAIFGSR 226
>gi|308177568|ref|YP_003916974.1| pyridoxal phosphate-dependent enzyme [Arthrobacter arilaitensis
Re117]
gi|307745031|emb|CBT76003.1| putative pyridoxal phosphate-dependent enzyme [Arthrobacter
arilaitensis Re117]
Length = 245
Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 112/224 (50%), Gaps = 12/224 (5%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L QKI +A +A R + SV L+ V+K +D+ ++ +A++ G ENK+QEA+ K+
Sbjct: 19 NLAAVNQKIAAAAEVAGRDRHSVRLLPVTKTIDTDRLALAIAAGVETLGENKVQEAQDKY 78
Query: 66 IPLRKEWDVQLRF--IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
+++ LR+ IG LQ+NK + D + K A L + + R L V+
Sbjct: 79 EHFIEQFP-HLRYAIIGPLQTNKAKFVAKFADEFHALDSLKLAETLQRRLELEDRTLEVF 137
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
IQVNT E KSGI + + +L GLM + + + F LL E
Sbjct: 138 IQVNTSGEESKSGIEAADAANLLGSLAPLDRLTPVGLMTMAANTTDQAAVRASFSLLRET 197
Query: 181 ARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ D+ELAIA GAT VR+G GIFG R
Sbjct: 198 RDRLQQDAPAGFQHLSMGMSGDYELAIAEGATVVRVGQGIFGAR 241
>gi|57234460|ref|YP_181491.1| hypothetical protein DET0758 [Dehalococcoides ethenogenes 195]
gi|57224908|gb|AAW39965.1| conserved hypothetical protein TIGR00044 [Dehalococcoides
ethenogenes 195]
Length = 220
Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 114/212 (53%), Gaps = 14/212 (6%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
ILA+ P D V+L A K +I A+ G I N L EA++ + PL E V+ F
Sbjct: 12 ILAELPPD-VTLEAAVKKRQPAEILAAIEAGVKIIGHNYLSEAEQTY-PLIGE-KVEWHF 68
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQSNK +IV LF V+ETV + AS L+ + + L V+I++N+G E QKSG++
Sbjct: 69 IGKLQSNKCKKIVRLFSVVETVDSFEIASELNRRAAEIDKVLSVFIEINSGREEQKSGVL 128
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL----LSEIAR----ECKLT 187
P T + L + GLM + PA+ +P + F L EIA +L
Sbjct: 129 PEDTVELAKRLSGLSNLRLSGLMTMGPALEDPDELRSVFRLTKNKFDEIAAMGLPNTELK 188
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
LSMGM+ +++A+ G VR+G+ IFG RP
Sbjct: 189 FLSMGMSGSYKVAVQEGTNLVRLGTRIFGPRP 220
>gi|312793527|ref|YP_004026450.1| alanine racemase domain-containing protein [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312875958|ref|ZP_07735947.1| alanine racemase domain protein [Caldicellulosiruptor lactoaceticus
6A]
gi|311797156|gb|EFR13496.1| alanine racemase domain protein [Caldicellulosiruptor lactoaceticus
6A]
gi|312180667|gb|ADQ40837.1| alanine racemase domain protein [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 233
Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 115/230 (50%), Gaps = 16/230 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L ++ ++IE + + A R D VSL+ +K VD + I++A G IF EN++QE
Sbjct: 6 TLKKNIEDVMERIEMACLRAGRKPDEVSLLGATKGVDVETIKLANQFGLKIFGENRVQEF 65
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L EW FIG LQ+NK+ I +I ++ + L K +
Sbjct: 66 LPKFQELPYLEW----HFIGRLQTNKIKYIYDKVSLIHSIDSPQQIDELEKRCTKAGKTC 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V I++N G E K GI P + + + ++G M IPP + + +F +
Sbjct: 122 SVLIEINIGGEESKGGINPEKVDHLIEKISNSSHVILKGFMTIPPIEDDDMKLRGYFRKM 181
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
EI + K + LSMGM+ DFE+AI GAT VRIG+ IFGERP
Sbjct: 182 KEIFEKYKKLNYNNVNIEVLSMGMSGDFEVAIEEGATLVRIGTKIFGERP 231
>gi|254518699|ref|ZP_05130755.1| alanine racemase domain-containing protein [Clostridium sp.
7_2_43FAA]
gi|226912448|gb|EEH97649.1| alanine racemase domain-containing protein [Clostridium sp.
7_2_43FAA]
Length = 225
Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 113/218 (51%), Gaps = 17/218 (7%)
Query: 14 IENSAILAKR--PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
IE + I +R PKD V+LVAVSK + I +A GQ F ENK+QE K L K
Sbjct: 3 IEENIIKLRRSLPKD-VTLVAVSKTKPIEDIEIAYKTGQRDFGENKVQELIDKEKSLEK- 60
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
D++ FIGSLQ+NKV +V +I ++S K + + E K++ + IQ+N G E
Sbjct: 61 -DIRWHFIGSLQTNKVKYLVGKVHLIHSLSSIKLLNKIESEFSKKNCTANLLIQINIGKE 119
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA---------- 181
KSGI + D + V+GLM I P GN + Y ++
Sbjct: 120 ESKSGIFEEELNDLINEIEICNNCKVKGLMAIIPK-GNENTNRYYFKKMKNIYDDLSKKS 178
Query: 182 -RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + LSMGMT D+E+AI G+ +R+G GIFG+R
Sbjct: 179 YKNISMEILSMGMTNDYEIAIEEGSNLIRVGEGIFGKR 216
>gi|258545057|ref|ZP_05705291.1| alanine racemase domain protein [Cardiobacterium hominis ATCC
15826]
gi|258519677|gb|EEV88536.1| alanine racemase domain protein [Cardiobacterium hominis ATCC
15826]
Length = 254
Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 103/229 (44%), Gaps = 24/229 (10%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + +I + R D V L+ VSK V ++++ A G + ENK+QEA KW
Sbjct: 18 NLATIQARINAACAACGREPDEVRLLPVSKTVPAERLHFAYDAGIRLLGENKVQEAYDKW 77
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L + IG LQSNKV + + + A L + ++ R L V++Q
Sbjct: 78 QALADLDGLNWAVIGHLQSNKVKYVARFAAEFQALDSLDIAESLDRRLQQEGRSLDVFVQ 137
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC- 184
VNT E QK G+ P+ F+ Q L + GLM + F R C
Sbjct: 138 VNTSDEPQKYGMTPDAADAFIRALPQYNSLRLRGLMTL--------ALFSDDHAAVRRCF 189
Query: 185 ---------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +LSMGM+ DFELAIA GAT+VR+G IFG R
Sbjct: 190 VRLRELRDRLRETNPAIAELSMGMSGDFELAIAEGATTVRVGQAIFGAR 238
>gi|325981756|ref|YP_004294158.1| hypothetical protein NAL212_1086 [Nitrosomonas sp. AL212]
gi|325531275|gb|ADZ25996.1| protein of unknown function UPF0001 [Nitrosomonas sp. AL212]
Length = 249
Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 114/234 (48%), Gaps = 28/234 (11%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N L KQ+I ++ A R SV L+ V+K V ++++R+A + G ENK+QEA++K
Sbjct: 14 NNLTTVKQRIVDACKKAGRDPASVRLLPVTKTVPAERLRIAYAAGCHEMGENKIQEAREK 73
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
L + +++ IG LQ+NK + + + + K A L + + R + VY+
Sbjct: 74 SEVL-SDLNIKWAVIGHLQTNKAKYLARFANEFQALDSLKVAEELDKRLQNEGRAIDVYV 132
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVN+ E K G+ P +DFV L ++GLM + F + REC
Sbjct: 133 QVNSSGEASKFGLPPEDVRDFVQKLPNYSSLRIKGLMTLAI--------FSSDHDRVREC 184
Query: 185 -------------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+LSMGM+ D+ELAI GAT VR+G IFG+RP
Sbjct: 185 FVKMREIQAMLRQEAPAGLSFDELSMGMSGDYELAIEEGATVVRVGQAIFGKRP 238
>gi|322436846|ref|YP_004219058.1| alanine racemase domain protein [Acidobacterium sp. MP5ACTX9]
gi|321164573|gb|ADW70278.1| alanine racemase domain protein [Acidobacterium sp. MP5ACTX9]
Length = 235
Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 109/230 (47%), Gaps = 12/230 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L +I + A R V+L+AVSKM + A + GQ +F EN++QE
Sbjct: 1 MSIAENLAHLHDQILAACARANRNPADVALMAVSKMHPVDLLLEAHAAGQRLFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K D+ + IG LQSNK + LF I+TV K A L+ + L
Sbjct: 61 WQGKSEIAGTLEDLDMHLIGPLQSNKSTRAAELFHSIDTVDSLKLAQRLNAAAGALGKKL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP-------AMGNPKPH 173
P+YI+V E K G+ P + L GLM +PP A +P+
Sbjct: 121 PIYIEVKLSPEESKHGLAPADLPALIEALPSLTHLRPTGLMTVPPWPADIAQAGDEARPY 180
Query: 174 FYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L + + + LT LS+GM+ DF AI G+T +RIG+ IFG+R
Sbjct: 181 FRELRRLRDQSQRTIPTLTGLSIGMSNDFAAAIEEGSTCIRIGTAIFGKR 230
>gi|259909615|ref|YP_002649971.1| hypothetical protein EpC_29900 [Erwinia pyrifoliae Ep1/96]
gi|224965237|emb|CAX56769.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96]
Length = 237
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 110/225 (48%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +Q+I +A R ++L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 SIKHNLQQVRQRISAAAAKCGRASQEITLLAVSKTKTASAIEEAVAAGQCCFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K I L + FIG LQSNK + FD TV R + AS LS + L
Sbjct: 63 VDK-IQLLANPSLVWHFIGPLQSNKSRLVAEHFDWCHTVDRLRIASRLSQQRPDTLAPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQ+N E KSGIM + + +L + GLM IP N + ++A
Sbjct: 122 VLIQINISAEPSKSGIMLAELPALALQIAALPRLKLRGLMAIPAPQDNYDSQLAVCQQMA 181
Query: 182 RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 182 TAFEHLQQDYPGVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGAR 226
>gi|71652235|ref|XP_814779.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70879780|gb|EAN92928.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 252
Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 87/220 (39%), Positives = 115/220 (52%), Gaps = 21/220 (9%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL 76
A RP V+LVAVSK ++ CG F EN +QE +K L K D+Q
Sbjct: 27 DAASGGRP---VTLVAVSKTKSPACVQALYDCGHRCFGENYVQELVEKAGVLPK--DIQW 81
Query: 77 RFIGSLQSNKVSEIVSLFD---VIETVSREKTASLLSLEMI--KQSRFLPVYIQVNTGYE 131
FIG LQSNKV E++ D +++TV EK A+ L+ + + R L VYIQVNT E
Sbjct: 82 HFIGHLQSNKVKELLEGVDGLYLVQTVDSEKLATKLNNGCVTYRGGRSLNVYIQVNTSGE 141
Query: 132 IQKSGIMP-NQTKDFVILCRQKY-QLNVEGLMCI--PPAMGNPKPHFYLL---SEIAREC 184
KSG P NQT + ++ LNV G+M I P P+ LL +AR
Sbjct: 142 ESKSGTEPGNQTVELAQYIQEHCKHLNVAGVMTIGMPDYTSRPENFECLLQVREAVARAL 201
Query: 185 KLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGMT DFE A+ G+T VR+G+ +FG+R C
Sbjct: 202 SVPADSLALSMGMTGDFENAVKMGSTIVRVGTALFGKRYC 241
>gi|189485622|ref|YP_001956563.1| hypothetical protein TGRD_619 [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170287581|dbj|BAG14102.1| conserved hypothetical protein [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 231
Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/216 (36%), Positives = 112/216 (51%), Gaps = 11/216 (5%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW- 72
I+N+ AK V L+AV+K + I AL C E+K++EA K+ L
Sbjct: 11 IKNTVNSAKNTSVVVELIAVTKTFPYQCILEALKCEIKHIGESKIKEALPKFEQLGSSLV 70
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
+ FIG LQSNKV + V FD+I ++ K A +SL + I+V EI
Sbjct: 71 GITKHFIGHLQSNKVKKAVENFDLIHSLDSVKLAGSISLYAANIDKLQNCLIEVKVSQEI 130
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF---YLLSEIARE--- 183
K+G+ PN +DF C + ++GLM I P NP +P+F Y L E R+
Sbjct: 131 TKTGVNPNYVEDFYKQCLSIPNILIKGLMVIAPYSDNPEDSRPYFKQVYNLFENIRKSYG 190
Query: 184 -CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ D+++A+ GAT +RIGS IFG+R
Sbjct: 191 SSEFNILSMGMSDDYKIAVEEGATMIRIGSAIFGKR 226
>gi|299771278|ref|YP_003733304.1| hypothetical protein AOLE_15220 [Acinetobacter sp. DR1]
gi|298701366|gb|ADI91931.1| hypothetical protein AOLE_15220 [Acinetobacter sp. DR1]
Length = 230
Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 115/222 (51%), Gaps = 7/222 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q Q+I+ + A+R ++V L+AVSK S+ +R + GQ F EN LQEA
Sbjct: 4 LQDARQHVLQQIQRACEHAQRSPETVQLLAVSKTHPSESLREMYAAGQRAFGENYLQEAL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K I ++ +++ FIG +Q NK + FD + V R A LS + ++ L +
Sbjct: 64 DK-IEALQDLEIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQRLQNQSDLNI 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-----PAMGNPKPHFYLL 177
+QVN + K G P++ + V Q ++ + GLM IP A + K F +
Sbjct: 123 CLQVNIDGQDSKDGCAPDEVAELVAQISQLAKIKLRGLMVIPAPDNTAAFVDAKALFDAV 182
Query: 178 SE-IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E A LSMGM+ D + AIA+G+T VR+G+ +FG+R
Sbjct: 183 KEKHAHPEHWDTLSMGMSGDLDAAIAAGSTMVRVGTALFGKR 224
>gi|186682117|ref|YP_001865313.1| alanine racemase domain-containing protein [Nostoc punctiforme PCC
73102]
gi|186464569|gb|ACC80370.1| alanine racemase domain protein [Nostoc punctiforme PCC 73102]
Length = 222
Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 114/205 (55%), Gaps = 15/205 (7%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SV L+AVSK V + IR A S G FAE+++QEA K L D+ FIG LQSNK
Sbjct: 19 SVKLIAVSKQVPVEAIRFAYSAGIRDFAESRIQEAASKQAELHDLPDITWHFIGHLQSNK 78
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP-VYIQVNTGYEIQKSGI-MPNQTKD 144
+ + F I +V K A L ++ +Q R P V +QV + KSG +P D
Sbjct: 79 AKKAIEQFPWIHSVDNLKLAQRLD-QLAQQLRVSPQVCLQVKILPDPNKSGWSVPELLAD 137
Query: 145 FVILCRQKYQLNVEGLMCIPPA-MGNPK--PHFYLLSEIAR--------ECKLTKLSMGM 193
L + K L ++GLM IPP+ + NP+ F L E+A+ K+ +LSMGM
Sbjct: 138 LPTLDQYK-NLQIQGLMTIPPSGLNNPEILNVFNLNRELAKKIQEQNWSHIKMQQLSMGM 196
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D+ELA+ +GAT VR+G+ +FG+R
Sbjct: 197 SGDYELAVQAGATMVRLGTILFGDR 221
>gi|312143931|ref|YP_003995377.1| alanine racemase domain protein [Halanaerobium sp. 'sapolanicus']
gi|311904582|gb|ADQ15023.1| alanine racemase domain protein [Halanaerobium sp. 'sapolanicus']
Length = 234
Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 117/225 (52%), Gaps = 15/225 (6%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67
Q +KI +A + R ++ + L+AVSK S +I+ G F EN++QE ++K
Sbjct: 11 QKIDEKIRKAAERSGRKREDIKLLAVSKTQSSAEIKALKELGVCCFGENRVQELEEKDAE 70
Query: 68 LRKEWDV-QLRFIGSLQSNKVSEIVSLFD--VIETVSREKTASLLSLEMIKQSRFLPVYI 124
L+ E V F+G LQ NKV ++ + + +IE+V + A ++ K R +PV I
Sbjct: 71 LKSEDIVIDWHFVGHLQRNKVKYLMRMENCKMIESVDSFRLAKEVNKRARKNDRIIPVLI 130
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP----------KPHF 174
Q+N + K GI +DF + L ++GLM I P + + K F
Sbjct: 131 QINIAEDDNKYGIKAENAEDFFKKIIKFKNLEIKGLMTILPYLDDEETLRKYFKELKNLF 190
Query: 175 YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
LSE + LT+LSMGMT D+++AI GAT VRIG +FGER
Sbjct: 191 DYLSENIK--VLTELSMGMTNDYQIAIEEGATIVRIGRALFGERE 233
>gi|241758478|ref|ZP_04756598.1| pyridoxal phosphate enzyme, YggS family [Neisseria flavescens
SK114]
gi|241321381|gb|EER57522.1| pyridoxal phosphate enzyme, YggS family [Neisseria flavescens
SK114]
Length = 231
Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 107/213 (50%), Gaps = 8/213 (3%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD 73
+E +A A RP D+V LVAVSK + IR GQ F EN +QE +K L D
Sbjct: 15 VEQAAEAAGRPADAVKLVAVSKTFPADDIREVYVAGQRDFGENYIQEWFEKTETLADLPD 74
Query: 74 VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ 133
+ IG +QSNK + + T+ R KTA LS + + L V I+VN E
Sbjct: 75 IVWHVIGDVQSNKTKFVAERAHWVHTIDRLKTARRLSEQRSSEMPPLQVCIEVNIAAEEA 134
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY----LLSEI-ARECK 185
K G+ P + + Q + V GLMC+ A + + F+ LL+E+ A +
Sbjct: 135 KHGVAPAEAVALALEVAQLPNIKVRGLMCVAKADSSDDELRSQFHTMQRLLAELNAAGVE 194
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D +A+ GAT VRIGS IFG+R
Sbjct: 195 ADVLSMGMSGDMPIAVECGATHVRIGSAIFGKR 227
>gi|283479693|emb|CAY75609.1| UPF0001 protein yggS [Erwinia pyrifoliae DSM 12163]
Length = 266
Score = 111 bits (278), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 110/225 (48%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +Q+I +A R ++L+AVSK + I A++ GQ F EN +QE
Sbjct: 32 SIKHNLQQVRQRISAAAAKCGRASQEITLLAVSKTKTASAIEEAVAAGQCCFGENYVQEG 91
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K I L + FIG LQSNK + FD TV R + AS LS + L
Sbjct: 92 VDK-IQLLANPSLVWHFIGPLQSNKSRLVAEHFDWCHTVDRLRIASRLSQQRPDTLAPLN 150
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQ+N E KSGIM + + +L + GLM IP N + ++A
Sbjct: 151 VLIQINISAEPSKSGIMLAELPALALQIAALPRLKLRGLMAIPAPQDNYDSQLAVCQQMA 210
Query: 182 RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 211 TAFEHLQQDYPGVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGAR 255
>gi|187929987|ref|YP_001900474.1| alanine racemase domain-containing protein [Ralstonia pickettii
12J]
gi|187726877|gb|ACD28042.1| alanine racemase domain protein [Ralstonia pickettii 12J]
Length = 238
Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 119/232 (51%), Gaps = 18/232 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ LQ +Q+I + LA R V+L+AVSK D+ +R A + GQ +F EN +QE
Sbjct: 4 IAANLQAVRQRITTACTLASRDAAGVTLLAVSKTFDADAVRAAHAAGQRLFGENYVQEGI 63
Query: 63 KK---WIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K LR D ++ FIG LQSNK + FD + ++ R K A LS +
Sbjct: 64 AKIDALADLRTGADPIRWHFIGPLQSNKTRAVAEQFDWVHSIDRLKIAERLSAQRPNTLP 123
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY----QLNVEGLMCIPPAMGNP---- 170
L V +++N + K G++P+ D V+ + +L + GLM +P +P
Sbjct: 124 PLQVCLEINISRQASKHGLLPD--FDEVLAVARAVSALPRLQLRGLMAVPEPSDDPAAQR 181
Query: 171 KPHFYL--LSEIAREC--KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
KP L L++ RE L LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 182 KPFADLRALADRLRETGIPLDTLSMGMSADLEDAIAEGATIVRVGSAIFGAR 233
>gi|254482735|ref|ZP_05095973.1| conserved hypothetical protein TIGR00044 [marine gamma
proteobacterium HTCC2148]
gi|214037094|gb|EEB77763.1| conserved hypothetical protein TIGR00044 [marine gamma
proteobacterium HTCC2148]
Length = 230
Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 105/206 (50%), Gaps = 9/206 (4%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
+++P+ + L+AVSK + +R A CG F EN LQEA K L + + FIG
Sbjct: 24 SQKPESDIILLAVSKTRPADDVRAAYDCGLTQFGENYLQEAVDKITDL-ADLPITWHFIG 82
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK I F ++++ R K A L+ + L V +QVN E KSG+ N
Sbjct: 83 PIQSNKTRPIAEHFQWVQSIERPKIARRLNEQRPDSLPPLQVCLQVNISSEQSKSGVSLN 142
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLTK-----LSMG 192
+ + L + +L + GLM IP A + + F L + + KL LSMG
Sbjct: 143 ELDELATLVDELPRLQLRGLMAIPAATDSESEQRATFAALRKAFEQLKLKHPQIDTLSMG 202
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D E AIA G+T VRIG+ IFG R
Sbjct: 203 MSGDMESAIAEGSTMVRIGTAIFGPR 228
>gi|297537837|ref|YP_003673606.1| alanine racemase domain-containing protein [Methylotenera sp. 301]
gi|297257184|gb|ADI29029.1| alanine racemase domain protein [Methylotenera sp. 301]
Length = 240
Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 113/228 (49%), Gaps = 13/228 (5%)
Query: 2 SLGNKLQVFKQKIEN--SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
++GN+LQ I + SA + SV L+AVSK S+ IR A GQ +F EN LQ
Sbjct: 3 TIGNRLQDILAIIHSTISASQYRSASQSVQLLAVSKAQTSQAIREAYLAGQTMFGENYLQ 62
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + L + ++ FIG +QSNK I F + +V R K A L+
Sbjct: 63 EALDKQVQL-NDLAIEWHFIGPIQSNKTQLIAQNFAWVHSVDRLKIAQRLNDARPANLAP 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQVNT E KSG+ N+ + + +L + GLM IP + +
Sbjct: 122 LQVCIQVNTSNEASKSGVSTNELEALATAIVKMPRLKLRGLMAIPEPSKDYNQQRSQFKQ 181
Query: 180 IAREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ REC L LS+GM+ D++ AI G+T VRIGS +FG R
Sbjct: 182 V-RECYDALLAQGFALDTLSIGMSDDYQAAIEEGSTIVRIGSALFGAR 228
>gi|238026281|ref|YP_002910512.1| Alanine racemase domain-containing protein [Burkholderia glumae
BGR1]
gi|237875475|gb|ACR27808.1| Alanine racemase domain protein [Burkholderia glumae BGR1]
Length = 236
Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 114/235 (48%), Gaps = 17/235 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ L +L ++I+++A A R V+L+AVSK ++ +R A + GQ F EN +QE
Sbjct: 2 LDLAARLASVHRRIDDAARSAGRAPGDVALLAVSKTFPAEAVRAAHAAGQRAFGENYVQE 61
Query: 61 AKKKWIPLRK-----EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
+ K L EW FIG LQSNK + FD + +V R K A L+ +
Sbjct: 62 SLDKIAALADLRASLEW----HFIGPLQSNKTRAVAERFDWVHSVDRLKIAQRLAEQRPA 117
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PK 171
Q L V +QVN E KSG+ P++ L + GLM IP G+
Sbjct: 118 QLPPLNVCVQVNVSGEATKSGVAPDEVAALAQAVAALPALRLRGLMAIPEPAGDLAAQRA 177
Query: 172 PHFYL--LSEIARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
PH L L + R L LSMGM+ D E A+ GAT VRIG+ IFG R T
Sbjct: 178 PHRRLRELYDALRAGGLALDTLSMGMSADLEAAVLEGATIVRIGTAIFGARDYST 232
>gi|192361248|ref|YP_001980612.1| hypothetical protein CJA_0088 [Cellvibrio japonicus Ueda107]
gi|190687413|gb|ACE85091.1| conserved hypothetical protein TIGR00044 [Cellvibrio japonicus
Ueda107]
Length = 268
Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 111/224 (49%), Gaps = 8/224 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +KL ++I +AILA R +V L+AVSK I A + GQ F EN LQEA
Sbjct: 44 IDDKLAKVTERIHQAAILAGRDPQTVQLIAVSKTQPPAAIAEAYAWGQRRFGENYLQEAL 103
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L D+Q FIG +QSNK I + F + +V R + A L+ + + L +
Sbjct: 104 DKQQALHALDDLQWHFIGPIQSNKTRLIAAHFAWVHSVDRLRIAQRLNDQRPEGLPPLEI 163
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-- 180
IQVN E KSG+ + + + +L + GLM IP A + + S +
Sbjct: 164 CIQVNIDDEDTKSGVNLAELPALALAIQPLKRLRLRGLMAIPVATSDTQQQRASFSRLRL 223
Query: 181 ------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D E AIA GAT VR+G+ IFG R
Sbjct: 224 AVAALNRQGLALDTLSMGMSGDLEAAIAEGATFVRVGTDIFGAR 267
>gi|114566485|ref|YP_753639.1| hypothetical protein Swol_0953 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337420|gb|ABI68268.1| protein of unknown function UPF0001 [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 225
Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 115/224 (51%), Gaps = 18/224 (8%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AK 62
N + K KIE +A + R V+LVAVSK VD + +R A S G F EN++ E +K
Sbjct: 6 NNWESIKNKIEQAAFKSGRKASEVTLVAVSKTVDIETVRRAHSLGINDFGENRVNELLSK 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
++ +P + IG LQ+NKV +IV +I ++ R + A L + + +PV
Sbjct: 66 RESLP-----GINWHLIGRLQTNKVKDIVGRTTLIHSLDRWRLAQELDKRGLVLEQEVPV 120
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQ+N E QK+G P + + + Q L + GLM + P +P +P F L +
Sbjct: 121 LIQLNISGEEQKAGFKPTELGEVLAAAEQFKALRIYGLMTMAPLDPDPERARPLFRELFQ 180
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + L LSMGM++D+ +AI GA VRIGS +F
Sbjct: 181 LRQKFIDRNYKNVNLKYLSMGMSQDYAVAIEEGANLVRIGSALF 224
>gi|227495939|ref|ZP_03926250.1| alanine racemase domain protein [Actinomyces urogenitalis DSM
15434]
gi|226834527|gb|EEH66910.1| alanine racemase domain protein [Actinomyces urogenitalis DSM
15434]
Length = 251
Score = 111 bits (278), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 108/224 (48%), Gaps = 10/224 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + +I+ +A A R V L+ V+K V ++R A + G ENK+QEAK+K
Sbjct: 20 NLAAIRTRIDAAAAAAGRSPSEVRLLPVTKTVPEDRLRAAFAAGVTEMGENKVQEAKRKS 79
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ + + IG LQ+NK ++V+ + + A L + R L VY+Q
Sbjct: 80 TEM-ADLGIHWALIGHLQTNKAKDVVAFAHEFQALDSLHVAEALDRRLQAAGRSLDVYVQ 138
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL---LSE 179
VN+ E K G+ P+ F+ L V GLM + + + F L L +
Sbjct: 139 VNSSGEESKFGLEPDAVTAFLAALPVYSSLRVRGLMTLAAHTDDRERVRECFRLMRRLRD 198
Query: 180 IARECKLTK---LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
RE LSMGM+ DFELAIA GAT VR+G+ IFG RP
Sbjct: 199 AGREAGTVGDGLLSMGMSGDFELAIAEGATCVRVGTAIFGARPT 242
>gi|291287269|ref|YP_003504085.1| alanine racemase domain protein [Denitrovibrio acetiphilus DSM
12809]
gi|290884429|gb|ADD68129.1| alanine racemase domain protein [Denitrovibrio acetiphilus DSM
12809]
Length = 229
Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 122/228 (53%), Gaps = 18/228 (7%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKLQEAKK 63
++L+ + +E + + R D V++VAVSK + I A + G I+ EN++QEA
Sbjct: 4 DRLENIIKDVEEAKKRSGRTHD-VTIVAVSKRFPLEDIENAYDTTGHTIYGENRIQEALD 62
Query: 64 KWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L K DVQ+ FIG +Q+NKV + + F +I +V EK A + K+ R V
Sbjct: 63 KSASLMKTRPDVQVHFIGHIQTNKVKYLKNNFALIHSVDSEKLAEFMQKHFEKEDRVQDV 122
Query: 123 YIQVNTGYEIQKSGIMPN---QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
+QVN ++ KSG Q DF+ C L++ GLM +PP + + + +F
Sbjct: 123 LVQVNIAHDENKSGTGEEDAFQLCDFIRSCP---NLHLRGLMMMPPLVDDVEDNRCYFTR 179
Query: 177 LSEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ +C + LSMGM+ D+++A+ G+T VR+G+ +FG R
Sbjct: 180 MKKMFDKCNDIKGYNIDTLSMGMSGDYQVAVEEGSTMVRVGTALFGHR 227
>gi|293609002|ref|ZP_06691305.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292829575|gb|EFF87937.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 230
Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 110/222 (49%), Gaps = 7/222 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q Q+I+ + A+R ++V L+AVSK S+ +R + GQ F EN LQEA
Sbjct: 4 LQDARQHVLQQIQTACEHAQRVPETVQLLAVSKTHPSESLREMYAAGQRAFGENYLQEAL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K I + D++ FIG +Q NK + FD + V R A LS + L +
Sbjct: 64 EK-IEALHDLDIEWHFIGHVQRNKTKHVAEKFDWVHGVDRLIIAERLSNQRGDDQSALNI 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-----PAMGNPKPHFYLL 177
+QVN + K G P + V Q ++ + GLM IP A + K F +
Sbjct: 123 CLQVNIDGQDSKDGCAPEDVAELVAQISQLPKIKLRGLMVIPAPDNTAAFADAKALFDAV 182
Query: 178 -SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ A LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 183 KDQHAHPQDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGAR 224
>gi|323498672|ref|ZP_08103663.1| TIM-barrel fold family protein [Vibrio sinaloensis DSM 21326]
gi|323316272|gb|EGA69292.1| TIM-barrel fold family protein [Vibrio sinaloensis DSM 21326]
Length = 238
Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 106/211 (50%), Gaps = 17/211 (8%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK---WIPLRKEWDVQLRFI 79
RP+DSV L+AVSK + I A GQ+ F EN +QE +K + E +++ FI
Sbjct: 24 RPRDSVQLLAVSKTKPNGAILEAAQAGQLAFGENYVQEGAEKVAYFTQHHPELELEWHFI 83
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G +QSNK + F + TV R K A L+ + S + V +QVNT E KSG+
Sbjct: 84 GPIQSNKSRHVAENFAWVHTVDRAKIAQRLNDQRPAGSPPIQVLMQVNTSGEASKSGL-- 141
Query: 140 NQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR----------ECKLT 187
NQ + F + L L + GLM IP + + ++A +L
Sbjct: 142 NQDEIFALAELISSLPNLTLRGLMSIPANVSDYDSQLAAFKQLAELQQTLINRYPNQQLD 201
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D E AI +G+T VRIG+ IFG R
Sbjct: 202 TLSMGMSGDMEAAIEAGSTMVRIGTAIFGAR 232
>gi|281205000|gb|EFA79194.1| hypothetical protein PPL_08020 [Polysphondylium pallidum PN500]
Length = 278
Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 115/217 (52%), Gaps = 15/217 (6%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL 76
+AI +K +V+LVAVSK S IR G F EN +QE + K L D++
Sbjct: 57 NAIKSKITDPNVTLVAVSKTKPSFMIRELYENGHRHFGENYIQELELKSKELEDLKDIKW 116
Query: 77 RFIGSLQSNKVSEIVSLFD--VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
FIGS+QSNK+ ++ S+ + V+ETV + A + S+ L + +QVNT E K
Sbjct: 117 HFIGSVQSNKIKQLGSVLNLAVVETVEKSSAADKFAKCFSNHSQPLEIMVQVNTSGEQSK 176
Query: 135 SGIMPNQTKDFV--ILCRQ--KYQLNVEGLMCI-PPAMGNPKPHFYLLSE----IARECK 185
SG PN+ D V I+ + K L GLM I P +P F L E I+++
Sbjct: 177 SGCEPNEVVDIVKHIISDEQCKKSLKFSGLMTIGSPNATEDQPDFKKLFECRDSISKQLG 236
Query: 186 L----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DF AI G+TSVR+GS IFGER
Sbjct: 237 LPIESIALSMGMSHDFVEAIKFGSTSVRVGSAIFGER 273
>gi|197334451|ref|YP_002155186.1| pyridoxal phosphate enzyme, YggS family [Vibrio fischeri MJ11]
gi|197315941|gb|ACH65388.1| pyridoxal phosphate enzyme, YggS family [Vibrio fischeri MJ11]
Length = 236
Score = 111 bits (277), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + +IENS R DSV L+AVSK + + A+ GQ IF EN +QE
Sbjct: 3 SIKQNINQITHQIENSIQKCGRNPDSVQLLAVSKTKPIELLEQAIEAGQCIFGENYVQEG 62
Query: 62 KKKWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K +K+ ++ FIG +QSNK I FD + +V R K A L+ + +
Sbjct: 63 IEKVQYFQKQHPTTSLEWHFIGPIQSNKTRPIAEHFDWVHSVERLKIAQRLNEQRPSELG 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVNT E KSG + + + L + GLM IP + N F
Sbjct: 123 ELNVLIQVNTSSEESKSGTTAEEVMELAAAINKMPNLTLRGLMSIPANVSNYAEQLAAFK 182
Query: 176 LLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ I A+ ++ LSMGM+ D + AI +G+T VRIG+ IFG R
Sbjct: 183 QLTSIQNQLRAQYPQVDTLSMGMSGDMDAAIEAGSTMVRIGTAIFGAR 230
>gi|288942593|ref|YP_003444833.1| alanine racemase domain-containing protein [Allochromatium vinosum
DSM 180]
gi|288897965|gb|ADC63801.1| alanine racemase domain protein [Allochromatium vinosum DSM 180]
Length = 232
Score = 111 bits (277), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 111/215 (51%), Gaps = 10/215 (4%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I+ + A RP SV+L+AVSK ++ IR A + GQ F E+ LQEA K L
Sbjct: 16 RIQAAIEHAGRPAGSVALIAVSKKQPAEAIRAAHAAGQRAFGESYLQEALDKQALLVDLS 75
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
D++ FIG +QSNK +I + FD + ++ A LS + L V +QVN E
Sbjct: 76 DIEWHFIGRIQSNKTRQIAAHFDWVHGLADLGHARRLSEQRPASRPPLNVCLQVNLSGET 135
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP----KPHFYLLSEI-----ARE 183
K G+ P+ + CR+ L V GLM +P + +P F L E+ +
Sbjct: 136 SKGGVAPDAVGALLEPCRELPGLRVRGLMTLPAPSEDETEQRRP-FRALRELRDRLATPD 194
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
C L LSMGM+ D E AI GAT VRIG+ +FG R
Sbjct: 195 CPLEVLSMGMSDDMEAAILEGATQVRIGTAVFGVR 229
>gi|307546704|ref|YP_003899183.1| hypothetical protein HELO_4114 [Halomonas elongata DSM 2581]
gi|307218728|emb|CBV43998.1| K06997 [Halomonas elongata DSM 2581]
Length = 234
Score = 111 bits (277), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 103/227 (45%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L L ++++ + A RP D L+AVSK + IR A GQ F EN +QEA
Sbjct: 5 ALSESLTAVRERLAAALHAAGRPDDDARLLAVSKTKPAAMIREAWRLGQREFGENYVQEA 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D+ FIG LQSNK + F I +V RE+ A L + L
Sbjct: 65 LDKQAELADLDDIVWHFIGPLQSNKSRIVAEHFAWIHSVDRERLARRLDAQRPASLGPLN 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP----KPHFYLL 177
V +QVN E KSGI + L + GLM IP +P +P L
Sbjct: 125 VCLQVNISDEASKSGISLAELPALAEAVHGLPNLRLRGLMAIPAPCADPDEQRRPFIRLR 184
Query: 178 SEIAR------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ E L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 185 EALESLRTRLPEAPLDTLSMGMSDDLEAAVMEGATLVRLGTAIFGAR 231
>gi|213963787|ref|ZP_03392036.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga sputigena
Capno]
gi|213953563|gb|EEB64896.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga sputigena
Capno]
Length = 242
Score = 111 bits (277), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 119/225 (52%), Gaps = 15/225 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+++ +Q+I + A R + V L+ +K V ++I++AL G + AENK+QE K+K+
Sbjct: 8 IELIQQRIAKACAKAGRKPEEVKLLLATKTVTPERIKIALEAGYTLIAENKVQELKEKYE 67
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRFLPVYI 124
L+ FIG LQ+NK+ EI+ ++V +E+V R A L + + + L ++I
Sbjct: 68 ALKDTPHTN-HFIGHLQTNKIKEILR-YEVSCVESVDRLDLAQKLHNRLASEGKELDIFI 125
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAMGNPKPHFYLLSEIA 181
QVNT E K G P++ D V L+++GLM I + F LL I
Sbjct: 126 QVNTSNEESKFGADPSEVLDLVKQVATLPTLHIKGLMTIGLFSAETEKVRACFQLLKRIQ 185
Query: 182 RE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ +LSMGM+ D E AI GAT VR+G+ IFG+R
Sbjct: 186 QDIIALNLPNVDPKELSMGMSGDLETAIEEGATIVRVGTAIFGQR 230
>gi|91976780|ref|YP_569439.1| hypothetical protein RPD_2306 [Rhodopseudomonas palustris BisB5]
gi|91683236|gb|ABE39538.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
BisB5]
Length = 271
Score = 111 bits (277), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 115/231 (49%), Gaps = 19/231 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S L+ ++I + R + V L+ V+K V ++ +R+A + G FAENKLQEA
Sbjct: 24 SFAANLKTVLERIAAACDRCGRNVNDVRLLPVTKTVPARVLRLAYAAGITDFAENKLQEA 83
Query: 62 KKKW-----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ K+ +P+R W + IG LQ+NKV +V + + A L+ + +
Sbjct: 84 RDKFAILGDLPIR--WSI----IGHLQTNKVKYLVRFASEFHALDSLRLADELNRRLEAE 137
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPH 173
R L V++QVNT E K G+ PN F+ + +L GLM + +
Sbjct: 138 GRDLDVFVQVNTSGEASKYGLHPNDVIAFIERLPEFPRLKPRGLMTLAIFSADTARVRAC 197
Query: 174 FYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F LL ++ LT+LSMGM+ DFE+AI GA VR+G IFG RP
Sbjct: 198 FRLLRDLRDRAVPIHPGLTQLSMGMSGDFEVAIEEGANVVRVGQAIFGARP 248
>gi|320581837|gb|EFW96056.1| Single-domain racemase, possibly non-specific due to the lack of
the second domain [Pichia angusta DL-1]
Length = 236
Score = 111 bits (277), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 119/225 (52%), Gaps = 19/225 (8%)
Query: 14 IENSAILAKRPK---DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+ N+ +A+R K D LV VSK + I+ G F EN +QE +K L K
Sbjct: 14 VSNANKIAQRVKELNDKARLVCVSKFKPASDIKALYDAGYRHFGENYVQELLEKAKVLPK 73
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFD---VIETVSREKTASLLSLEMIKQSR-FLPVYIQV 126
D+Q FIG LQ+NK ++ D +ET+ EK A L+ + + + VYIQV
Sbjct: 74 --DIQWHFIGGLQTNKTKDLAKNIDNLYAVETIDTEKKARKLNDVRAQCGKPIINVYIQV 131
Query: 127 NTGYEIQKSGIMPNQTKDFV-ILCRQKYQLNVEGLMCIPPAM----GNPKPHFYLLSEIA 181
NT E QKSGI P + I+ + +LN+EGLM I + + F L E++
Sbjct: 132 NTSGEEQKSGIAPEECLQLAKIIVNECPKLNLEGLMTIGSIVQSISSDENQDFKTLVEVS 191
Query: 182 R--ECKLTK---LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ E +L + LSMGM+ DFE A+ G++SVR+GS IFG RP +
Sbjct: 192 KKLEAELGRKLELSMGMSNDFEEALRQGSSSVRVGSNIFGSRPTK 236
>gi|319638710|ref|ZP_07993469.1| hypothetical protein HMPREF0604_01093 [Neisseria mucosa C102]
gi|317399951|gb|EFV80613.1| hypothetical protein HMPREF0604_01093 [Neisseria mucosa C102]
Length = 232
Score = 111 bits (277), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 106/215 (49%), Gaps = 8/215 (3%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
+ +E +A A RP D+V LVAVSK + IR + GQ F EN +QE +K L
Sbjct: 13 RAVEQAAEAAGRPADAVKLVAVSKTFPADDIREVYAAGQRDFGENYIQEWFEKTETLADL 72
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
D+ IG +QSNK + + T+ R KTA LS + + L V I+VN E
Sbjct: 73 PDIVWHVIGDVQSNKTKFVAERAHWVHTIGRLKTARRLSEQRPSEMPPLQVCIEVNIAAE 132
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLTK 188
K G+ P++ + + + V GLMC+ A + + F+ + + E
Sbjct: 133 EAKHGVAPDEAVGLALEVAKLPNIKVRGLMCVAKADSSDDELRSQFHTMQRLLAELNTAG 192
Query: 189 -----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D +A+ GAT +RIGS IFG+R
Sbjct: 193 VEADVLSMGMSGDMPIAVECGATHIRIGSAIFGKR 227
>gi|300777152|ref|ZP_07087010.1| YggS family pyridoxal phosphate enzyme [Chryseobacterium gleum ATCC
35910]
gi|300502662|gb|EFK33802.1| YggS family pyridoxal phosphate enzyme [Chryseobacterium gleum ATCC
35910]
Length = 246
Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 15/227 (6%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L ++I+ + + R D V L+ +K V +I++AL G + AENK+QE K+K
Sbjct: 7 HNLAAINERIKKACEQSGRNTDDVKLLLATKTVPPDRIKIALENGYTLIAENKVQELKEK 66
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI--ETVSREKTASLLSLEMIKQSRFLPV 122
+ L K + FIG LQ+NK+ +I+ +DVI +++ R + A L ++ ++R + V
Sbjct: 67 YEDL-KSIPHESHFIGHLQTNKIKDILK-YDVICVQSLDRLELAEKLHQRLLAENRTMDV 124
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAMGNPKPHFYLL-- 177
+IQVNT E K G+ P+Q + L ++GLM I + F +L
Sbjct: 125 WIQVNTSNEESKFGVNPDQAIEITRKISNYSTLKIKGLMTIGLFSAETDKVRACFKILKN 184
Query: 178 --SEIARE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+I RE ++ +LSMGM+ D E AI GAT VR+G+ +FG R
Sbjct: 185 LQQDIIRENIPNVEMKELSMGMSGDLETAIEEGATIVRVGTAVFGAR 231
>gi|315646043|ref|ZP_07899164.1| alanine racemase domain protein [Paenibacillus vortex V453]
gi|315278804|gb|EFU42118.1| alanine racemase domain protein [Paenibacillus vortex V453]
Length = 229
Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 31/236 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL ++ +Q+I + + R ++ V+++AV+K V K L G EN+ Q+
Sbjct: 1 MSLMERIDQVEQRITEACARSGRDRNEVNMIAVTKYVSLDKTASVLDQGLQHIGENRWQD 60
Query: 61 AKKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR-------EKTASLLSL 111
A++KW L R W FIG LQ+NKV +++ F I ++ R EK A+ L+L
Sbjct: 61 AQEKWNALGDRGTW----HFIGHLQTNKVRDVIDKFQYIHSLDRLSLAHELEKRAAALNL 116
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMG 168
+ + ++QVN E K G+ P + +F+ + V GLM + P +
Sbjct: 117 Q-------VSAFMQVNISGEESKYGLAPEKAAEFLKEINSLSHVKVTGLMTMAPYESSAE 169
Query: 169 NPKPHFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+P F L ++ E LT+LSMGM+ DFE+AI GAT VR+GS + G
Sbjct: 170 QTRPVFRGLRQLRDELNEQALTLEPLTELSMGMSNDFEVAIEEGATWVRLGSILVG 225
>gi|296140431|ref|YP_003647674.1| alanine racemase domain protein [Tsukamurella paurometabola DSM
20162]
gi|296028565|gb|ADG79335.1| alanine racemase domain protein [Tsukamurella paurometabola DSM
20162]
Length = 259
Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 108/220 (49%), Gaps = 9/220 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +I+ +A A R V L+ VSK V ++R+A++ G ENK+QEAK+K
Sbjct: 29 LAAVRARIDAAATRAGRAPSDVRLLPVSKTVPQDRLRLAVAAGCTELGENKVQEAKRKSE 88
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L + V IG LQ+NK ++ + + + + A L + R L VY+QV
Sbjct: 89 EL-ADLAVAWAVIGHLQTNKAKDVAAFAAEFQALDSVRVAEALDRRLQAAGRGLDVYVQV 147
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR- 182
NT E K G+ P DF+ L V G M + + + F +L +
Sbjct: 148 NTSAEESKYGLSPGAVPDFLRELPAFASLRVRGFMTLAEFSADEARVRKCFRVLRRVRDR 207
Query: 183 ----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LT+LSMGM+ D+E+AI GAT VR+G IFG R
Sbjct: 208 ALDVDSGLTELSMGMSGDYEIAIEEGATCVRVGQAIFGSR 247
>gi|260913719|ref|ZP_05920195.1| YggS family pyridoxal phosphate enzyme [Pasteurella dagmatis ATCC
43325]
gi|260632258|gb|EEX50433.1| YggS family pyridoxal phosphate enzyme [Pasteurella dagmatis ATCC
43325]
Length = 233
Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 111/230 (48%), Gaps = 13/230 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + +Q+I+ A+R + +V L+AVSK + I A GQ F EN +QE
Sbjct: 1 MTIKQNVTQIQQRIQYYTAQAQRQQSAVKLLAVSKTKTVEDIYQAYQAGQTTFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K I ++ +++L FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GIDK-IAYFQQQNIELEWHFIGPLQSNKTRLVAEHFDWMQTLDRIKIADRLNEQRPYYKA 119
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH----- 173
L V IQ+N E KSGI PN + L + GLM IP + +
Sbjct: 120 PLNVLIQINISDENSKSGITPNDMLALATHIQNLPHLRLRGLMAIPAPTDDLQQQEQAFN 179
Query: 174 -----FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L + E ++ LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 180 AMNSLFIALQQALPEAQIDTLSMGMTDDMASAIKCGSTMVRIGTAIFGAR 229
>gi|190574835|ref|YP_001972680.1| putative racemase [Stenotrophomonas maltophilia K279a]
gi|190012757|emb|CAQ46386.1| putative racemase [Stenotrophomonas maltophilia K279a]
Length = 257
Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 114/227 (50%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q+I ++ R SV L+ VSK VD +IR+A++ G ENK+QEA+
Sbjct: 17 IAANLVTVRQRIADACARVGRDPASVRLLPVSKTVDEARIRMAVAAGCHELGENKVQEAQ 76
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + + V IG LQ+NK + + + + A L + + R L V
Sbjct: 77 RKAEAM-ADLGVHWSVIGHLQTNKARYVARFASEFQALDSLRVAEALQQRLQLEERTLDV 135
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSE 179
++QVNT E K G+ P+ + FV +L V GLM + P + + F L E
Sbjct: 136 FVQVNTSAEPSKYGLEPDAVEAFVQQLPAFDRLRVRGLMTLAIFTPDVERVRACFVRLRE 195
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + L++LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 196 LRDQLQRTAPPDLDLSQLSMGMSGDFEVAIEEGATVVRVGQAIFGAR 242
>gi|331018485|gb|EGH98541.1| hypothetical protein PLA106_20818 [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 228
Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 107/224 (47%), Gaps = 10/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ AKR SV ++A SK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAAKRDPASVGMLAGSKTKPASDLREAYTAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + L D+ L FIG +QSNK I F + +V R K A LS + +
Sbjct: 63 LGKQLELA---DLPLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEGLEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN E KSG P +L + GLM IP +P +
Sbjct: 120 LNICIQVNVSGESSKSGCAPQDLPALAAAINALPRLKLRGLMAIPEPTNDPAAQAASFAA 179
Query: 180 IAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 VRTLQEQLNLSLDTLSMGMSHDLEAAIAQGATWVRIGTALFGAR 223
>gi|91773052|ref|YP_565744.1| hypothetical protein Mbur_1062 [Methanococcoides burtonii DSM 6242]
gi|91712067|gb|ABE51994.1| pyridoxal 5'-phosphate-dependent-protein, UPF0001family
[Methanococcoides burtonii DSM 6242]
Length = 216
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 107/199 (53%), Gaps = 13/199 (6%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
LV V+K +D+++I ++ G I EN++QE + K + + IG+LQ+NKV +
Sbjct: 19 LVCVTKTIDTERINESIRAGATIIGENRVQEFEDKCADI---LPCERHLIGNLQTNKVKK 75
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
V LFDVI++V K + + ++ V++QVN G E QK G ++ +
Sbjct: 76 AVHLFDVIQSVDSLKLIQDIDKKAKAINKVQKVFLQVNIGNEPQKFGFGSDEIGQVITQI 135
Query: 150 RQKYQLNVEGLMCIPPAMGNPKPHFY------LLSEIAR----ECKLTKLSMGMTRDFEL 199
+ ++V+GLMCIPP + + Y L E+ + + +LSMGM+ D+ +
Sbjct: 136 QSLKNVHVKGLMCIPPFVSPEQTRSYFKKMKALFDELKQVDQDNIDIQELSMGMSNDYRV 195
Query: 200 AIASGATSVRIGSGIFGER 218
AI GAT VR+GS IFG R
Sbjct: 196 AIEEGATMVRVGSAIFGNR 214
>gi|315181245|gb|ADT88159.1| hypothetical protein vfu_A03051 [Vibrio furnissii NCTC 11218]
Length = 235
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 108/228 (47%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ L+ +IEN+ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNLEHITSQIENAQQKCGRSRSSVQLLAVSKTKPVEAILEAAEAGQRAFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + E D++ FIG LQSNK I FD + T+ R K A LS +
Sbjct: 63 CDKVQFFAEHHPELDLEWHFIGPLQSNKTRLIAEHFDWMHTIDRAKIAQRLSEQRPAHLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSG+ N L L + GLM IP P + F
Sbjct: 123 PLQVLIQVNTSGEASKSGVSENDLFTLAELISGLPNLTLRGLMSIPENVPDYASQLAAFR 182
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ + + + LSMGM+ D AI +G+T VRIG+ IFG+R
Sbjct: 183 QLAALKDQLAEKYDGIDTLSMGMSGDMAAAIEAGSTIVRIGTAIFGQR 230
>gi|300858981|ref|YP_003783964.1| hypothetical protein cpfrc_01564 [Corynebacterium
pseudotuberculosis FRC41]
gi|300686435|gb|ADK29357.1| hypothetical protein cpfrc_01564 [Corynebacterium
pseudotuberculosis FRC41]
gi|302206679|gb|ADL11021.1| Pyridoxal phosphate enzyme, YggS family [Corynebacterium
pseudotuberculosis C231]
gi|302331231|gb|ADL21425.1| Pyridoxal phosphate enzyme, YggS family [Corynebacterium
pseudotuberculosis 1002]
gi|308276921|gb|ADO26820.1| Pyridoxal phosphate enzyme, YggS family [Corynebacterium
pseudotuberculosis I19]
Length = 232
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 107/215 (49%), Gaps = 11/215 (5%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
++I NSA A R V L+AV+K + +R A++ G + ENK QE K K
Sbjct: 16 ERIVNSAERAGRDAAEVRLIAVTKTHPVEVVRDAVAAGMTVLGENKPQELSSK---ASKV 72
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
V IG LQ NK E+ + + + A L ++ R L V++QVNT E
Sbjct: 73 SGVTWCAIGRLQRNKAKEVAAWAQEFHALDSLRLADALQRKLEAADRMLEVFVQVNTSGE 132
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIARECK--- 185
+QK GI P + +F+ +L+V GLM + P + F L E+ +
Sbjct: 133 VQKGGIAPAEAAEFLGQLADYDRLHVRGLMTMARNSPEEAVVRSSFVQLRELRDTLQPYF 192
Query: 186 --LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
T+LSMGM+ DFE AI GATSVR+GS +FG R
Sbjct: 193 PTATELSMGMSGDFEWAIEEGATSVRVGSALFGPR 227
>gi|317124653|ref|YP_004098765.1| alanine racemase domain protein [Intrasporangium calvum DSM 43043]
gi|315588741|gb|ADU48038.1| alanine racemase domain protein [Intrasporangium calvum DSM 43043]
Length = 241
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 108/229 (47%), Gaps = 9/229 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ L +L+ +++I + A R V+LV V+K + + + G ENK QE
Sbjct: 11 LELAGRLEAVRERINAACADAGRDPGEVTLVVVTKFFPASDVLLLHDLGVRAIGENKDQE 70
Query: 61 AKKKWIPLRKEW----DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
A K +R+ D+++ F+G LQSNK + DV+ ++ R K L +
Sbjct: 71 AGPKVAQVREALPPGSDLEVHFVGRLQSNKARHVAGYADVVHSLDRRKLLDGLDAGAFDR 130
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
R L + IQV+ + + G +P + D Q+ L ++G+M + P +P F
Sbjct: 131 GRPLGLLIQVSLDGDTSRGGALPEEVPDLGAAVAQRAGLVLKGVMAVAPLGADPDVAFAS 190
Query: 177 LSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L +A + + +S GM+ D E A+ GAT +R+G+ I G RP
Sbjct: 191 LRRVATDLQAVHPTADWVSAGMSGDLEAAVRHGATHLRVGTAILGSRPS 239
>gi|330836418|ref|YP_004411059.1| hypothetical protein Spico_0449 [Spirochaeta coccoides DSM 17374]
gi|329748321|gb|AEC01677.1| protein of unknown function UPF0001 [Spirochaeta coccoides DSM
17374]
Length = 235
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 121/232 (52%), Gaps = 18/232 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L ++L ++ I L+ R ++L+AVSK + I A GQ IF EN++QE
Sbjct: 4 TLASRLAEARRTIREHVALSGRQDSDITLMAVSKTRPYETILEAYEAGQRIFGENRVQEI 63
Query: 62 KKKW-IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ +P + ++L IG LQSNKV ++V L D I++V + A +S +++ R +
Sbjct: 64 VDKFPLPSERPTGMRLHLIGHLQSNKVRKVVPLVDAIDSVHSLRLAGQISCVAMERGRVM 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ----LNVEGLMCIPPAMGNP---KPH 173
P+ ++ NT E KSG T+D + + + + GLM I P G+ +
Sbjct: 124 PILLEYNTSGESSKSGFT---TEDDLFSAVEAISSLGGVKIRGLMTIGPLEGDEDAVRRA 180
Query: 174 FYLLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L + EC + LSMGM+ D+ +A+ G+T VR+G+ +FG+R
Sbjct: 181 FRRLRSLRDECIKRFPSQDFSVLSMGMSSDYPVAVEEGSTLVRLGTTLFGQR 232
>gi|326334346|ref|ZP_08200560.1| YggS family pyridoxal phosphate enzyme [Capnocytophaga sp. oral
taxon 338 str. F0234]
gi|325693505|gb|EGD35430.1| YggS family pyridoxal phosphate enzyme [Capnocytophaga sp. oral
taxon 338 str. F0234]
Length = 268
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 13/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +Q +++I + A R V L+ +K V ++IR A + G + AENK+QE
Sbjct: 28 TIEKNIQQVQERINKACETAGRDPKEVKLLLATKTVTPERIRQAFAAGYTLIAENKVQEL 87
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFL 120
K+K+ L+ + FIG LQ+NK+ +I+ +E++ R A L ++ + + +
Sbjct: 88 KEKYEALKSVPHIN-HFIGHLQTNKIKDILKYEVSCVESLDRYDLAEKLHQKLSQIGKQM 146
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAMGNPKPHFYLL 177
V+IQVNT E K G+ P + V Q L++ GLM I + F LL
Sbjct: 147 DVFIQVNTSAEESKFGVAPENVLELVKQVAQFPTLHIRGLMTIGLFSAEQEKVRKCFQLL 206
Query: 178 SEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I + + + +LSMGM+ DFE+AIA GAT VR+G+ IFG+R
Sbjct: 207 KNIQQQIITLNLPDVQPKELSMGMSGDFEIAIAEGATIVRVGTAIFGQR 255
>gi|89902638|ref|YP_525109.1| hypothetical protein Rfer_3879 [Rhodoferax ferrireducens T118]
gi|89347375|gb|ABD71578.1| Protein of unknown function UPF0001 [Rhodoferax ferrireducens T118]
Length = 239
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 110/232 (47%), Gaps = 23/232 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +LQ + ++ + A R V+L+AVSK V + + A GQ F EN +QEA
Sbjct: 8 LQTQLQSVRARVTTACQAAGRAASEVTLLAVSKTVAPEIVTQAFEAGQRAFGENYIQEAV 67
Query: 63 KKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K LR EW IG +QSNK + FD ++T+ R K A LS +
Sbjct: 68 EKISHLRHLPLEWHC----IGPIQSNKTRLVAEHFDWVQTLDRLKIAQRLSDQRPAGRPP 123
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY---- 175
L V IQVN KSG+ P++ + L + G+M IP P P F
Sbjct: 124 LQVCIQVNVDGGASKSGVSPSEALALAQRVAELPNLRLRGIMSIP----EPTPDFVAACA 179
Query: 176 LLSEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L + + A L LSMGM+ D E AI SG+T VR+G+ IFG RP
Sbjct: 180 LFARVKAVFDALNAEGLALDTLSMGMSADMEAAIQSGSTMVRVGTAIFGGRP 231
>gi|330977068|gb|EGH77028.1| hypothetical protein PSYAP_10145 [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 236
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 108/221 (48%), Gaps = 10/221 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A+R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAAERDPASVGLLAVSKTKPASDLREAYTAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + L D+ L FIG +QSNK I FD + +V R K A LS + +
Sbjct: 63 LGKQLELS---DLPLCWHFIGPIQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L + IQVN E KSG P +L + GLM IP +P F
Sbjct: 120 LNICIQVNVSGEASKSGCTPQDLSALAAAIIALPRLRLRGLMAIPVPTDDPAAQDASFAA 179
Query: 177 LSEIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + L LSMGM+ D E AIA GAT VRIG+ +
Sbjct: 180 VRTLQEQLNLPLDTLSMGMSHDLEAAIAQGATWVRIGTALL 220
>gi|323700142|ref|ZP_08112054.1| alanine racemase domain protein [Desulfovibrio sp. ND132]
gi|323460074|gb|EGB15939.1| alanine racemase domain protein [Desulfovibrio desulfuricans ND132]
Length = 235
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 104/218 (47%), Gaps = 10/218 (4%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
++ + +A A R + V+LVAVSK+ + IR GQ F EN +QEA K L
Sbjct: 16 REALAVAAGQAGRAAEDVTLVAVSKLHPASDIRDLAETGQTEFGENYVQEALDKQNELAG 75
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
+V FIG LQSNK + F ++ +V K A L + + + IQVN
Sbjct: 76 -LNVNWHFIGGLQSNKAKYVAGKFALVHSVDSSKLAQALHKKAVSLDVVQDILIQVNIAG 134
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-- 185
E QKSGI + L + GLM +PP P +P F L E+ +
Sbjct: 135 ETQKSGITVESLPELAEAVLGMEGLRLVGLMTMPPFFDEPERARPVFARLRELRDGLEPR 194
Query: 186 ----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L LSMGMT DF A+ GAT VRIG+ IFG RP
Sbjct: 195 LGVSLPHLSMGMTGDFVPAVQEGATLVRIGTRIFGARP 232
>gi|160914738|ref|ZP_02076952.1| hypothetical protein EUBDOL_00745 [Eubacterium dolichum DSM 3991]
gi|158433278|gb|EDP11567.1| hypothetical protein EUBDOL_00745 [Eubacterium dolichum DSM 3991]
Length = 215
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 111/209 (53%), Gaps = 15/209 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
IL + P V L+AVSK +++ A G F ENK+QE K+ P + W
Sbjct: 9 ILQELPS-HVELIAVSKTRTKEEVDEAYRLGCRTFGENKVQELVAKYDP-KYTW----HL 62
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ NKV + V D+IE++ + A + + K + +PV ++VN E K+GI
Sbjct: 63 IGHLQRNKVKDAVKYADMIESLDSMRLAQEIEKQCAKIDKVMPVLVEVNISQEENKTGIA 122
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP------HFYLLSEIAREC---KLTKL 189
+ +F+ C+Q L+++GLMC+ P N + L + A+E + L
Sbjct: 123 YEECINFIKECQQFPHLDIQGLMCVGPLTDNQADIEACFESMHTLFQEAQEAFGPSIHIL 182
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMGM+ D+ELAI G+T VR+G+ +FG+R
Sbjct: 183 SMGMSDDYELAIKHGSTMVRLGTILFGKR 211
>gi|257095145|ref|YP_003168786.1| alanine racemase domain-containing protein [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257047669|gb|ACV36857.1| alanine racemase domain protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 229
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 113/228 (49%), Gaps = 15/228 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L KLQ +I +A R V L+AVSK ++ +R A + GQ F E+ LQE
Sbjct: 3 TLPAKLQAVLARIACAARRWGRDPADVLLLAVSKTWPAECLREAAAAGQRAFGESYLQEG 62
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K LR EW FIG+LQ+NK + FD + ++ R + A LS +
Sbjct: 63 IDKVAELRAMGLEW----HFIGTLQANKTRPVAETFDWVHSLDRLRVAERLSAQRPLSLP 118
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFY 175
L V +QVN E K G+ P + + +L + GLM IP + + F
Sbjct: 119 SLSVCLQVNVSGEASKGGVSPAEAPALAHAVARLPKLRLRGLMAIPAPSDDFVEQRRPFR 178
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E++ + + L LSMGM++D E AIA G+T VR+G+ IFGER
Sbjct: 179 RLRELSEQLRADGLVLDTLSMGMSQDLEAAIAEGSTLVRVGTAIFGER 226
>gi|258620724|ref|ZP_05715759.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|258586922|gb|EEW11636.1| conserved hypothetical protein [Vibrio mimicus VM573]
Length = 236
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 111/228 (48%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRCFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + ++ FIG LQSNK + FD + T+ REK A L+ +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIEREKIALRLNEQRPADMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L L + GLM IP P F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPEQLFTLAELISGLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+E+ ++ + LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPHIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGER 230
>gi|59711037|ref|YP_203813.1| hypothetical protein VF_0430 [Vibrio fischeri ES114]
gi|59479138|gb|AAW84925.1| predicted enzyme [Vibrio fischeri ES114]
Length = 236
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 113/228 (49%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + +IENS R DSV L+AVSK + + A+ GQ IF EN +QE
Sbjct: 3 SIKQNINQITHQIENSIQKCGRNPDSVQLLAVSKTKPIELLEQAIEAGQRIFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K +K+ ++ FIG +QSNK I FD + +V R K A L+ + +
Sbjct: 63 IEKVQYFQKQHSTTSLEWHFIGPIQSNKTRPIAEHFDWVHSVERLKIAQRLNDQRPSELG 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVNT E KSG + + + L + GLM IP + N F
Sbjct: 123 ELNVLIQVNTSSEESKSGTTAEEVMELAAAINKMPNLTLRGLMSIPANVSNYAEQLAAFK 182
Query: 176 LLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ I A+ ++ LSMGM+ D + AI +G+T VRIG+ IFG R
Sbjct: 183 QLTSIQNQLRAQYPQIDTLSMGMSGDMDAAIEAGSTMVRIGTAIFGAR 230
>gi|218887298|ref|YP_002436619.1| alanine racemase domain protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758252|gb|ACL09151.1| alanine racemase domain protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 272
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/259 (32%), Positives = 121/259 (46%), Gaps = 45/259 (17%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
SL ++ + +++ +A A R V+LVAVSK + + + GQ F EN +QEA
Sbjct: 19 SLLDRWAAVRARVDGAARAAGRDPAGVTLVAVSKFHPAASVAALSAAGQRDFGENYVQEA 78
Query: 62 KKKWIPLRKEWDV----------------------QLRFIGSLQSNKVSEIVSLFDVIET 99
LRK+ +V + FIG LQSNK ++V F ++ T
Sbjct: 79 ------LRKQAEVADMTGMGPDAASGTKVAGGAAPRWHFIGHLQSNKAKDVVGRFALLHT 132
Query: 100 VSREKTAS-----LLSLEMIKQSRFLP---VYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
V E A L + P + +QVN G E QKSG+ P+
Sbjct: 133 VDSEALARKLDQRLSGMPAQGAGGVAPGQDILLQVNIGDEEQKSGVDPDDLPALTDAVLA 192
Query: 152 KYQLNVEGLMCIPPAMGN---PKPHFYLLSEI-----AR-ECKLTKLSMGMTRDFELAIA 202
+L + GLMC+PP + +P+F L E+ AR L LSMGM+ D E+A+A
Sbjct: 193 LPRLRLLGLMCMPPIFDDGEASRPYFARLRELRDALSARVGLPLPHLSMGMSHDVEVAVA 252
Query: 203 SGATSVRIGSGIFGERPCQ 221
GAT VR+G+ IFG RP +
Sbjct: 253 EGATIVRVGTDIFGPRPAR 271
>gi|254363058|ref|ZP_04979117.1| hypothetical protein MHA_2645 [Mannheimia haemolytica PHL213]
gi|153094723|gb|EDN75513.1| hypothetical protein MHA_2645 [Mannheimia haemolytica PHL213]
Length = 225
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 103/202 (50%), Gaps = 8/202 (3%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+D+V L+AVSK + I+ A+ GQ F EN +QEA +K +++ FIG LQS
Sbjct: 23 RDNVRLLAVSKTKPVEAIQAAIEAGQRAFGENYVQEAVEKIEFFANRPELEWHFIGPLQS 82
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK + + FD I+TV R K A L+ + L V IQ+N E KSGI P++
Sbjct: 83 NKTKLVAAYFDWIQTVDRLKIAERLNEQRPADKAPLNVLIQINISDEASKSGIEPDEMLP 142
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNP---KPHF----YLLSEIAREC-KLTKLSMGMTRD 196
Q L + GLM IP P K F L + + E + LSMGM+ D
Sbjct: 143 LAQAISQLPNLKLRGLMAIPKPESEPEQQKVAFRKMQLLFNRLQTEFDDIDTLSMGMSDD 202
Query: 197 FELAIASGATSVRIGSGIFGER 218
+ AI G+T VRIG+ IFG R
Sbjct: 203 MQAAIECGSTMVRIGTAIFGAR 224
>gi|312622419|ref|YP_004024032.1| alanine racemase domain-containing protein [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202886|gb|ADQ46213.1| alanine racemase domain protein [Caldicellulosiruptor
kronotskyensis 2002]
Length = 233
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 116/230 (50%), Gaps = 16/230 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L ++ ++IE + + A R D VSL+ +K VD + I++A G IF EN++QE
Sbjct: 6 TLKKNIEDVMERIEMACLRAGRKPDEVSLLGATKGVDVETIKLANQFGLKIFGENRVQEF 65
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L EW FIG LQ+NK+ I +I ++ + L K S+
Sbjct: 66 LPKFQELPYLEW----HFIGRLQTNKIKYIYDKVSLIHSIDSPQQIDELEKRCAKASKIC 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V I++N G E K G+ + D + + ++G M IPP + + +F +
Sbjct: 122 SVLIEINIGGEESKGGVSIEKVDDLIEKISNCSHVILKGFMTIPPIEDDEMKLRVYFRKM 181
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
EI + K + LSMGM+ DFE+AI GAT VRIG+ IFGERP
Sbjct: 182 KEIFEKYKKLNYNNVNIEVLSMGMSGDFEVAIEEGATLVRIGTKIFGERP 231
>gi|262280014|ref|ZP_06057799.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|262260365|gb|EEY79098.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
Length = 235
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 113/222 (50%), Gaps = 7/222 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q Q+I + A+R ++V L+AVSK S+ +R + GQ F EN LQEA
Sbjct: 9 LQDARQHVLQQIRRACEHAQRAPETVQLLAVSKTHPSESLREMYAAGQRAFGENYLQEAL 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K I ++ +++ FIG +Q NK + FD + V R A LS + ++ L +
Sbjct: 69 EK-IEALQDLEIEWHFIGHVQRNKTKNLAEKFDWVHGVDRLIIAERLSNQRLQDQSDLNI 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-----PAMGNPKPHFYLL 177
+QVN + K G P++ V Q ++ + GLM IP A + K F +
Sbjct: 128 CLQVNIDGQDSKDGCAPDEVAALVAQISQLPKIRLRGLMVIPAPDNTAAFADAKRLFDEV 187
Query: 178 SE-IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E A LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 188 KEKHAHPQDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGAR 229
>gi|194366159|ref|YP_002028769.1| alanine racemase domain-containing protein [Stenotrophomonas
maltophilia R551-3]
gi|194348963|gb|ACF52086.1| alanine racemase domain protein [Stenotrophomonas maltophilia
R551-3]
Length = 257
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 114/227 (50%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q+I ++ R SV L+ VSK VD +IR+A++ G ENK+QEA+
Sbjct: 17 IAANLVTVRQRIADACARVGRDPASVRLLPVSKTVDDARIRMAVAAGCQELGENKVQEAQ 76
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + + V IG LQ+NK + + + + A L + + R L V
Sbjct: 77 RKAETM-ADLGVHWSVIGHLQTNKARYVARFASEFQALDSLRVAEALQQRLQLEDRTLDV 135
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSE 179
++QVNT E K G+ P+ + FV +L V GLM + P + + F L E
Sbjct: 136 FVQVNTSAEPSKYGLEPDAVEAFVQQLPAFDRLRVRGLMTLAMFTPDVERVRACFVRLRE 195
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + L++LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 196 LRDKLQRTAPPGLDLSQLSMGMSGDFEVAIEEGATVVRVGQAIFGAR 242
>gi|294649640|ref|ZP_06727054.1| alanine racemase domain protein [Acinetobacter haemolyticus ATCC
19194]
gi|292824456|gb|EFF83245.1| alanine racemase domain protein [Acinetobacter haemolyticus ATCC
19194]
Length = 228
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 110/212 (51%), Gaps = 7/212 (3%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+IE + +R SV L+AVSK S+ +R GQ F EN LQEA K I ++
Sbjct: 14 QIEQACQHVQRDPKSVQLLAVSKTHPSQSLRELYLAGQRSFGENYLQEALGK-IEELQDL 72
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
+++ FIG +Q NK + FD + V R A LS + ++ + L + IQVN +
Sbjct: 73 EIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQRLETQKPLNICIQVNIDGQD 132
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-----PAMGNPKPHFYLLSEI-ARECKL 186
K G PN+ + V Q L + GLM IP A + K F + + A++
Sbjct: 133 SKDGCQPNEVSELVEQISQLPNLRLRGLMVIPAPDNVAAFADAKTLFDQVKSLHAQQQDW 192
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D + AIA+G+T VR+G+ +FG+R
Sbjct: 193 DTLSMGMSADLDAAIAAGSTMVRVGTALFGKR 224
>gi|260892901|ref|YP_003238998.1| alanine racemase domain protein [Ammonifex degensii KC4]
gi|260865042|gb|ACX52148.1| alanine racemase domain protein [Ammonifex degensii KC4]
Length = 247
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 113/220 (51%), Gaps = 15/220 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKK 64
L+ ++ I +A+ A R V LVAV+K V + I L+ G V EN++QE AK K
Sbjct: 9 LRQVREAITRAALRAGRDPTEVQLVAVTKGVPVEVIEQVLAEGVVDLGENRVQELVAKYK 68
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ + +W FIG LQ NKV +V ++ ++ R A L ++ P +
Sbjct: 69 LLGDKAKW----HFIGYLQRNKVKYLVRRIALLHSLDRWSLAQELDRWGQREGFVFPALV 124
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA 181
QVN E QK G++ + +DF++ R + V G M + P + +P F L+EIA
Sbjct: 125 QVNVAREPQKHGLLEEEVEDFLLAVRSLKGVKVLGFMTVAPWVAEAEEVRPVFRRLAEIA 184
Query: 182 RE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ ++ LSMGMT+DFE+A+ GA VR+G IF
Sbjct: 185 QRYTCLPGVEIRYLSMGMTQDFEVAVEEGANIVRVGRAIF 224
>gi|304396759|ref|ZP_07378639.1| alanine racemase domain protein [Pantoea sp. aB]
gi|304355555|gb|EFM19922.1| alanine racemase domain protein [Pantoea sp. aB]
Length = 235
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 111/225 (49%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ LQ +Q+I +A R + ++L+AVSK + + A + GQ+ F EN +QE
Sbjct: 3 SIQQNLQQVRQRIAAAAAQCGRAPEEITLLAVSKTKPASAVEEAFAAGQIGFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L +++ FIG LQSNK + F T+ R++ A LS + L
Sbjct: 63 VEKVQALAAHPELEWHFIGPLQSNKSRLVAENFAWCHTIDRQRIAQRLSDQRPASLPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQVN E KSGIM QL + GLM IP A + + + ++A
Sbjct: 123 VLIQVNISDENSKSGIMLEAVSGLAEQIAALPQLRLRGLMAIPAAESDYQRQLAVCQQMA 182
Query: 182 RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 EAFRQLQQQYSDIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 227
>gi|291460492|ref|ZP_06599882.1| pyridoxal phosphate enzyme, YggS family [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291416864|gb|EFE90583.1| pyridoxal phosphate enzyme, YggS family [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 230
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 115/229 (50%), Gaps = 16/229 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L+ ++I + A R ++SV L+AVSK IR A+ G F EN++QE
Sbjct: 3 NISENLERISERIFAACERAGRKRESVELIAVSKTKPVSDIREAMRLGIRCFGENRVQEL 62
Query: 62 KKKW--IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++K IP + W IG LQ NKV + + ++I +V A + E K
Sbjct: 63 RQKTAEIPEKLHW----HMIGVLQKNKVKYLPGMVEMIHSVDSLGLAQEIEKECKKHGIS 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY- 175
+ V +VN G E K G++P + F+ + L + GLM + P +P F
Sbjct: 119 MDVLCEVNVGREESKGGVLPEELPGFLSEAVKLSHLRIRGLMTVAPIASEAEESRPIFRS 178
Query: 176 ---LLSEIARE---CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL + RE + +LSMGM+ DFE+AI GAT VRIGS IFG+R
Sbjct: 179 LRELLESMNREIPALSMDQLSMGMSGDFEVAIEEGATLVRIGSAIFGDR 227
>gi|160896517|ref|YP_001562099.1| alanine racemase domain-containing protein [Delftia acidovorans
SPH-1]
gi|160362101|gb|ABX33714.1| alanine racemase domain protein [Delftia acidovorans SPH-1]
Length = 241
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 113/235 (48%), Gaps = 25/235 (10%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
NKLQ ++I ++ A R SV L++VSK + +R A+ G+ F EN +QE K
Sbjct: 6 NKLQQIHERIASACAQAGRASGSVQLLSVSKTFGADAVREAVLAGERSFGENYIQEGVDK 65
Query: 65 WIPLRKEW-----DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+R +Q IG +QSNK + FD +TV R K A LS + +
Sbjct: 66 IAAVRAMGLPGGETLQWHCIGPIQSNKTRLVAEHFDWAQTVDRLKIAERLSAQRPEGLAP 125
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N K+G+ P Q + Q +L + G+M IP + P F E
Sbjct: 126 LQVCIQLNVDGGETKAGVAPQQALELAAAIVQLPRLALRGVMSIP----DDAPGFEAQRE 181
Query: 180 I-AREC---------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ AR + +SMGMT D E A+A+G+T VR+GSGIFG+R
Sbjct: 182 VHARATTVFEQIRASGLPGLERFDTVSMGMTGDLEAAVAAGSTMVRVGSGIFGQR 236
>gi|167771414|ref|ZP_02443467.1| hypothetical protein ANACOL_02780 [Anaerotruncus colihominis DSM
17241]
gi|167666054|gb|EDS10184.1| hypothetical protein ANACOL_02780 [Anaerotruncus colihominis DSM
17241]
Length = 242
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 119/231 (51%), Gaps = 14/231 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+S+ ++ I + L R V L+AV+K V+++++ A+ G + EN+ QE
Sbjct: 9 LSIAQSVEQILDNIAKTCALCGRDASDVQLMAVTKTVEAQRVNEAIHAGVRLLGENRAQE 68
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ V + FIG LQ+NKV +IV +I+++ A + + K + +
Sbjct: 69 LLAKYDDYEKDG-VDIHFIGHLQTNKVRQIVDKVTMIQSLDSVALAQEIERQCEKHDKKM 127
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFY--- 175
++VN G E+ KSG+ P++ DF+ ++ V GLM IPP G K ++
Sbjct: 128 NCLVEVNIGSELSKSGVAPDRLSDFLGELSGFGRICVRGLMAIPPVSGTDAEKERYFSGM 187
Query: 176 --LLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +I R+ KL LSMGM+ D+ LAI G+ VR+G+ +FG R
Sbjct: 188 HKLFVDI-RDKKLDNINMDFLSMGMSDDYLLAIKHGSNLVRLGTRLFGHRD 237
>gi|294634381|ref|ZP_06712918.1| pyridoxal phosphate enzyme, YggS family [Edwardsiella tarda ATCC
23685]
gi|291092189|gb|EFE24750.1| pyridoxal phosphate enzyme, YggS family [Edwardsiella tarda ATCC
23685]
Length = 280
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 110/228 (48%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L +Q+I +A R +++L+AVSK I A++ GQ F EN +QE
Sbjct: 48 TIEHQLNAVRQRIARAAEQCGRDPHTITLLAVSKTKPIADIDAAIAAGQRAFGENYVQEG 107
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K R+ E + FIG LQSNK + FD I T+ R K A L+ +
Sbjct: 108 VSKIQHYRQQPGETTLTWHFIGPLQSNKSRLVAEHFDWIHTIDRVKIAQRLNEQRPATLA 167
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVN E KSGI Q Q L + GLM IP +P +
Sbjct: 168 PLNVLIQVNISDEQSKSGIALEQVDALADAISQLPNLRLRGLMAIPAPEDDPARQLAVCR 227
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A R +L LS+GMT D E AIA+G+T VRIG+ IFG R
Sbjct: 228 RMAQALQTLQQRYPQLDTLSLGMTHDMEAAIAAGSTLVRIGTAIFGAR 275
>gi|239623979|ref|ZP_04667010.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522010|gb|EEQ61876.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 226
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 117/220 (53%), Gaps = 17/220 (7%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLR 69
++IE + I + R +V+L+AVSK + A + G F ENK+QE AKK +P
Sbjct: 11 RRIEQACIRSGRDPKAVTLIAVSKTKPVPMLEEAYAAGARDFGENKVQEIVAKKPELP-- 68
Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
D++ IG LQ NKVS+++ +I +V + A + + K + + ++VN
Sbjct: 69 --EDIRWHMIGHLQRNKVSQVLGKAVLIHSVDSLRLAQQIETDAAKAGLDVDILLEVNVA 126
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIARECK- 185
E K G M + +D ++ + ++++GLM I P + NP+ + F L E A +
Sbjct: 127 REESKYGFMLEEVEDAIMTIKDFPHVHIKGLMTIAPFVENPEENRGIFKKLFEFAVDIDK 186
Query: 186 -------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGMT D+E+A+ GAT VR+G+GIFG R
Sbjct: 187 KNIDNVTMDVLSMGMTGDYEVAVEEGATMVRVGTGIFGVR 226
>gi|304316673|ref|YP_003851818.1| alanine racemase domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778175|gb|ADL68734.1| alanine racemase domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 233
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 112/228 (49%), Gaps = 12/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ K IE A R D + ++AV+K VD ++I+ A+ G ENK+QE
Sbjct: 1 MDIRLNLEEIKNNIEVHARKVNRNPDDILIMAVTKTVDVERIQEAIDNGITDIGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ + VQ FIG LQ+NKV I+ +I ++ A ++ + +
Sbjct: 61 LIDKYPALKDK--VQFHFIGHLQTNKVKYIIDKVKMIHSLDSIHLAQEINKRAHSNNIVM 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM--GNPKPHFYLLS 178
++VN G E K GI P DF+ + + GLM + P M +P+F +
Sbjct: 119 DCLVEVNIGSEESKYGIDPLNVMDFIKSLESFDNIRIRGLMTVAPFMEPEQVRPYFKKMK 178
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + LSMGMT D+ +A+ G+ VRIG+GIFG+R
Sbjct: 179 ELFDCAKSINQKNVDFKYLSMGMTNDYTVAVEEGSNIVRIGTGIFGKR 226
>gi|315127644|ref|YP_004069647.1| PLP-binding domain-containing protein [Pseudoalteromonas sp.
SM9913]
gi|315016158|gb|ADT69496.1| PLP-binding domain-containing protein [Pseudoalteromonas sp.
SM9913]
Length = 237
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 112/227 (49%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+++ +L +I +A A+R + ++L+AVSK + I A GQ F E+ +QE
Sbjct: 11 VTIAERLTSAYARIAEAAHKAQRNSNDITLLAVSKTKPATDIMAAYEQGQRQFGESYVQE 70
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L D+ FIG +QSNK + + + F +++V R K A L+ + + L
Sbjct: 71 AVDKIAQLDTFSDIVWHFIGPIQSNKSALVAANFAWVQSVDRLKIAKRLNSQRPETMPPL 130
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQVN E KSG PN+ + Q L + GLM IP + ++
Sbjct: 131 NVLIQVNISEEEAKSGCHPNEITELAQYIDQCAHLQLRGLMAIPAKSDDTNTQIQYFEQL 190
Query: 181 AREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ C + LSMGM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 191 -QTCFDKLQTQYPHIDTLSMGMSNDVEAAIAAGSTMVRIGTDIFGTR 236
>gi|220928048|ref|YP_002504957.1| alanine racemase domain protein [Clostridium cellulolyticum H10]
gi|219998376|gb|ACL74977.1| alanine racemase domain protein [Clostridium cellulolyticum H10]
Length = 235
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 113/217 (52%), Gaps = 13/217 (5%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I+ +A + R + L+AV+K V+ +I+ G F EN++QE +K+ +
Sbjct: 16 RIKIAAEKSGRKAQDIKLIAVTKTVEVGRIKNVCEYGIHDFGENRVQELLEKYDKF--DE 73
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
+Q IG LQ NKV I+ +I +V + A + K + + + +QVN E
Sbjct: 74 SIQWHLIGHLQKNKVKYIIDKVHMIHSVDSFELAKEIDNRAGKAGKRMNILLQVNVSGEE 133
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK---- 185
K GI P++ ++V Q +++ G+M I P GNP +P F L +I + K
Sbjct: 134 TKFGIKPDEVNEYVGFISQLKNISLRGMMTIAPFAGNPQEIRPIFKKLYDIYIDIKNKRI 193
Query: 186 ----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ DFE+AI G+ VRIG+GIFG+R
Sbjct: 194 DNVNMDYLSMGMSNDFEVAIEEGSNIVRIGTGIFGKR 230
>gi|332974663|gb|EGK11580.1| YggS family pyridoxal phosphate enzyme [Kingella kingae ATCC 23330]
Length = 230
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 114/226 (50%), Gaps = 8/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N +Q++ +A+ A+R S+ L+AVSK + I + GQ F EN +QE
Sbjct: 1 MNLANNYAATQQRLVQAALAAQRDPSSLQLIAVSKTFPTDDIHAVYALGQRDFGENYIQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L D+ IG++QSNK + + T+ K A LS + Q L
Sbjct: 61 WWQKTEQLADCGDLVWHIIGNVQSNKSRLVAERAHWLHTLDSVKLARRLSTQRPAQLPDL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA-MGNP--KPHFYLL 177
V I++N EI K GI P Q D +L + GLMC+ A +G+ + F +
Sbjct: 121 QVCIEINIANEINKHGIAPEQMLDLAHEVMALPKLKLRGLMCVAQANVGDDVLQQQFGRM 180
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+++ ++ + LSMGM+ D E A+A GAT VR+G+ IFG R
Sbjct: 181 NDLLQQLRQIAPDADTLSMGMSGDLECAVACGATMVRVGTAIFGGR 226
>gi|255535460|ref|YP_003095831.1| FIG018583: protein of unknown function [Flavobacteriaceae bacterium
3519-10]
gi|255341656|gb|ACU07769.1| FIG018583: protein of unknown function [Flavobacteriaceae bacterium
3519-10]
Length = 234
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 114/227 (50%), Gaps = 15/227 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
++ +L + K E SA R D V LVAVSK ++ ++ GQ IF ENK+QE
Sbjct: 10 FNMNQELNIRKNYKEQSA----RIPDGVELVAVSKTHPAEVVQQVYDLGQRIFGENKVQE 65
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D++ IG LQ+NKV I D +++V EK + + + K R +
Sbjct: 66 LIAKYPQLPK--DIKWHIIGHLQTNKVKYIAPFVDTVQSVDSEKILNEIDKQAAKCERKI 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNP---KPHF- 174
V +QV E K G+ Q + L + + + GLM + + + F
Sbjct: 124 NVLLQVKIAEEDTKYGLDAEQARTLYQNYLDGKYAHVEITGLMGMATFTDDQEQIRAEFR 183
Query: 175 ---YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E++ KLT LSMGM+ D+ELAI GATSVR+GS IFG R
Sbjct: 184 KLKTLFDELSGARKLTTLSMGMSGDYELAIECGATSVRVGSAIFGHR 230
>gi|242238227|ref|YP_002986408.1| alanine racemase domain protein [Dickeya dadantii Ech703]
gi|242130284|gb|ACS84586.1| alanine racemase domain protein [Dickeya dadantii Ech703]
Length = 241
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 109/228 (47%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ +QKI +A R + ++L+AVSK I A++ GQ F EN +QE
Sbjct: 5 TVPQNLQDVRQKISAAAERCGRAPEEITLLAVSKTKPVTAIEDAIAAGQRAFGENYVQEG 64
Query: 62 KKKWIPLRK-EWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K + R+ D+ L FIG LQSNK + FD T+ R + A LS +
Sbjct: 65 VEKILYFRQTHQDIALEWHFIGPLQSNKSRPVAEHFDWCHTIDRLRIAQRLSEQRPDTLP 124
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V +Q+N E KSGI+P++ L + GLM IP + + +
Sbjct: 125 PLNVLLQINISREESKSGILPDELPALAASVAALPNLRLRGLMAIPAPEADHQRQLAVFR 184
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ A + LSMGMT D AI +G+T VRIG+ IFG R
Sbjct: 185 RMYDLFQQLQADHAHVDTLSMGMTDDMAAAIEAGSTLVRIGTAIFGAR 232
>gi|19114789|ref|NP_593877.1| alanine racemase (predicted) [Schizosaccharomyces pombe 972h-]
gi|74625289|sp|Q9P6Q1|YKC9_SCHPO RecName: Full=UPF0001 protein C644.09
gi|7708588|emb|CAB90136.1| alanine racemase (predicted) [Schizosaccharomyces pombe]
Length = 237
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 118/210 (56%), Gaps = 21/210 (10%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+V LVAVSK + + A + GQ F EN +QE KK + L + DVQ FIGSLQS+K
Sbjct: 23 NVLLVAVSKFHPVETLMEAYNAGQRHFGENYMQEFLKK-VELMPD-DVQWHFIGSLQSSK 80
Query: 87 VSEIVSLFDV--IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
+I S+ ++ IET+ EK A L++ L VYIQVNT E K G+ P++ +
Sbjct: 81 CKKIASVKNLYSIETIDTEKKARLVNSAREALQLPLNVYIQVNTSGEENKGGVTPSKVLE 140
Query: 145 FVILCRQ----KYQLNVEGLMCI----PPAMGNPKPHFYLLSEIARECKLT-----KLSM 191
LC+Q KY L ++GLM I + + P F +LS++ + +LSM
Sbjct: 141 ---LCKQVQDMKY-LRLKGLMTIGSISNSQLSDHNPDFQVLSDLRESLQNELGIPLQLSM 196
Query: 192 GMTRDFELAIASGATSVRIGSGIFGERPCQ 221
GM+ D+ LAI G+ SVR+GS IFG RP +
Sbjct: 197 GMSSDYLLAIKYGSDSVRVGSSIFGSRPTE 226
>gi|298243510|ref|ZP_06967317.1| alanine racemase domain protein [Ktedonobacter racemifer DSM 44963]
gi|297556564|gb|EFH90428.1| alanine racemase domain protein [Ktedonobacter racemifer DSM 44963]
Length = 233
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 113/223 (50%), Gaps = 16/223 (7%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+++I +A A+R V+LVAVSK + I++A + G F EN++QEA K I +
Sbjct: 9 RERIAEAAHTAQREPSEVTLVAVSKTKPLEMIQIAYNLGIRHFGENRVQEALSK-IEVFH 67
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS----LLSLEMIKQSR-FLPVYIQ 125
D+ IG LQ+NK ++VS FD++++V A LL+ E Q LP+ ++
Sbjct: 68 PADLIWHMIGHLQTNKARKVVSAFDIVQSVDSLHLARTLDRLLAEEATDQEPGRLPILLE 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIAR 182
VN E K+G+ D L + GLM + P + + +P F L E
Sbjct: 128 VNVASEASKTGVTLTDIPDLARQVATLPHLEIRGLMTVAPQVEDLEEVRPVFRALHEARD 187
Query: 183 ECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ T+LSMGMT D+ +AI GAT VRIG IFG R
Sbjct: 188 HLRDEILGPTCTELSMGMTNDYVIAIEEGATIVRIGRAIFGAR 230
>gi|94987085|ref|YP_595018.1| TIM-barrel fold family protein [Lawsonia intracellularis
PHE/MN1-00]
gi|94731334|emb|CAJ54697.1| predicted enzyme with a TIM-barrel fold [Lawsonia intracellularis
PHE/MN1-00]
Length = 233
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 112/228 (49%), Gaps = 16/228 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ +I+ + + + R K SV L+A+SK K I + GQ F EN +QEA
Sbjct: 7 LKERLEFLHDQIQQAVVSSGRDKKSVKLIAISKFHPVKTIVNVFNYGQKAFGENYVQEAI 66
Query: 63 KKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K L EW F G LQ+NK+ +V F+ I T+ K A LLS + +
Sbjct: 67 YKQSELSGLPIEW----HFTGRLQTNKIKNVVGQFEYIHTIDSIKLAKLLSSRLPEDGPS 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
+ +QVN G E QK+GI + +L + GLMC+PP K +F
Sbjct: 123 QKILLQVNIGDEPQKAGITVAELPFLAETILSLPKLKLCGLMCLPPITHKGKVVSCYFTK 182
Query: 177 LS------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E+ + L +LSMGM+ D+ AI GAT +RIG+ IFG R
Sbjct: 183 LRELRDRLEVLLDITLPELSMGMSNDYIQAIKEGATLIRIGTSIFGHR 230
>gi|302389570|ref|YP_003825391.1| alanine racemase domain protein [Thermosediminibacter oceani DSM
16646]
gi|302200198|gb|ADL07768.1| alanine racemase domain protein [Thermosediminibacter oceani DSM
16646]
Length = 229
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 13/223 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
++ K KI+++A + R + + +VAV+K + + I+ A+ G I EN++QEA++K +
Sbjct: 8 IEKLKLKIKHAAAKSGRSPEDIHIVAVTKTIPPETIQAAVDRGIKILGENRVQEAQQK-V 66
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L K D+ IG LQ NKV V LF +I++V + A+ + + + V IQV
Sbjct: 67 GLVK-GDISWHMIGHLQKNKVKYAVKLFSMIQSVDSYELAAEIDKRAGMLGKVMDVLIQV 125
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE 183
N G E K G + + + + V GLM I P +P +P F + E+ +
Sbjct: 126 NIGREKTKFGAEYEEIPELIKKVSTLAHVKVRGLMAIAPFKEDPEDVRPFFRKMRELFTK 185
Query: 184 CK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K ++ LSMGMT DF +AI G+ +RIG+GIFG R
Sbjct: 186 IKSQELENVEMSFLSMGMTHDFHIAIEEGSNMIRIGTGIFGPR 228
>gi|261492832|ref|ZP_05989379.1| K+ uptake protein [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261494803|ref|ZP_05991281.1| K+ uptake protein [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261309514|gb|EEY10739.1| K+ uptake protein [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261311514|gb|EEY12670.1| K+ uptake protein [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 249
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 102/202 (50%), Gaps = 8/202 (3%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+D V L+AVSK + I+ A+ GQ F EN +QEA +K D++ FIG LQS
Sbjct: 45 RDDVRLLAVSKTKPVEAIQEAIEGGQRAFGENYVQEAIEKIECFANRSDLEWHFIGPLQS 104
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK + + FD I+TV R K A LS + L V IQ+N E KSGI P++
Sbjct: 105 NKTKLVAAHFDWIQTVDRLKIAERLSEQRPIGKAPLNVLIQINISDEASKSGIEPDEMLS 164
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-----LTKLSMGMTRD 196
Q L + GLM IP P K F + ++ + + LSMGM+ D
Sbjct: 165 LAQAISQLPNLKLRGLMAIPKPESEPEQQKIAFCKMQQLFHRLQAEFEGIDTLSMGMSDD 224
Query: 197 FELAIASGATSVRIGSGIFGER 218
+ AI G+T VRIG+ IFG R
Sbjct: 225 MQAAIECGSTMVRIGTAIFGAR 246
>gi|237807739|ref|YP_002892179.1| alanine racemase domain-containing protein [Tolumonas auensis DSM
9187]
gi|237500000|gb|ACQ92593.1| alanine racemase domain protein [Tolumonas auensis DSM 9187]
Length = 233
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 113/224 (50%), Gaps = 11/224 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L K++I + A A R + + L+AVSK + I+ A GQ +F E+ +QEA K
Sbjct: 7 RLLAIKEQITSHARQAGRSPNEIKLLAVSKTKPVEAIQEAYQAGQRLFGESYVQEAITKI 66
Query: 66 IPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
L D ++ FIG LQSNK + FD + ++ REKTA L+ + L V
Sbjct: 67 QQLNNSSDYAGIEWHFIGPLQSNKTKLVAEHFDWVHSIDREKTAQRLNEQRPANLPALNV 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSE 179
IQVN E KSGI ++ + + L + GLM I + + +F + E
Sbjct: 127 CIQVNISGERTKSGITADEVFGLAGIISEFPHLKLRGLMTIAENTDDLDVVRDNFLHMQE 186
Query: 180 IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K + LSMGMT D +AI+SG+T VRIG+ IFG R
Sbjct: 187 LFNRLKNQYPSVDTLSMGMTDDMSVAISSGSTMVRIGTAIFGSR 230
>gi|121535248|ref|ZP_01667062.1| alanine racemase domain protein [Thermosinus carboxydivorans Nor1]
gi|121306133|gb|EAX47061.1| alanine racemase domain protein [Thermosinus carboxydivorans Nor1]
Length = 240
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 116/235 (49%), Gaps = 21/235 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD------SVSLVAVSKMVDSKKIRVALSCGQVIFA 54
MS+ L+ Q I ++ LA+R V+++AV+K D +R A+ G I
Sbjct: 1 MSIAGNLETIAQNIRSA--LARRSTHIAEQLQPVTIIAVTKNQDIAAMREAIDHGVTIVG 58
Query: 55 ENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
EN++QEA K L + V+ IG LQ+NKV + VSLFD+I +V E+ A +
Sbjct: 59 ENRVQEAMTKHKSLDRT--VEWHLIGHLQTNKVRQAVSLFDLIHSVDSERLAREIDRAAA 116
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---K 171
K + + +QVN E K G+ P + L + + GLM I P + +
Sbjct: 117 KIGKRQNILLQVNVAGEETKFGVSPREAIVLARLVAGLEHVRLCGLMTIAPFFDDAEMTR 176
Query: 172 PHFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P F L +I E K + LSMGMT D+ +A+ GA VRIG+GIFG R
Sbjct: 177 PVFRELYQIYCELKALNLPGSDIKWLSMGMTNDYTVAVEEGANLVRIGTGIFGPR 231
>gi|296269390|ref|YP_003652022.1| alanine racemase domain-containing protein [Thermobispora bispora
DSM 43833]
gi|296092177|gb|ADG88129.1| alanine racemase domain protein [Thermobispora bispora DSM 43833]
Length = 249
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 107/226 (47%), Gaps = 11/226 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L +Q+IE + A R + ++L+AV+K + IR+ G EN+ QEA
Sbjct: 20 LASALARVEQRIEEACRAAGRRRSEITLIAVTKTYPASDIRLLAGLGVTDIGENRDQEAS 79
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + D+ FIG LQ+NK +V D+I +V R + ++LS E ++ R +
Sbjct: 80 AKVAEC-ADLDLTWHFIGQLQTNKARSVVRYADLIHSVDRSRLVTVLSREAVRAGREVGC 138
Query: 123 YIQVNTGYEI-----QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
+QV+ + G P + D L + G+M + P G+P F L
Sbjct: 139 LVQVSLDPPTPEGTSGRGGARPEEVLDLAGQIAAAEGLRLRGVMAVAPLGGDPAEAFARL 198
Query: 178 SEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
EIAR + +S GM+ D AIA GAT VRIG+ + G R
Sbjct: 199 REIARAVQAEHPDAGIISAGMSGDLAEAIACGATHVRIGTALLGRR 244
>gi|71909495|ref|YP_287082.1| hypothetical protein Daro_3884 [Dechloromonas aromatica RCB]
gi|71849116|gb|AAZ48612.1| Protein of unknown function UPF0001 [Dechloromonas aromatica RCB]
Length = 229
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 106/225 (47%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + LQ +I +A A R D+V L+AVSK + A GQ F EN +QE
Sbjct: 3 AIADNLQAVHSRIALAAAAAGRSPDTVRLLAVSKTWPLSCVLDAADAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + +++ FIG LQSNK + FD + ++ R K A LS + L
Sbjct: 63 IDKIAAISGR-NLEWHFIGPLQSNKSRPVAERFDWVHSIERLKIAERLSAQRPAYLPPLQ 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
V IQVN E KSG P++ L + GLM IP + F L
Sbjct: 122 VCIQVNVSGEASKSGCAPDEAPALCKSIAALPGLRLRGLMAIPEPTDDLDAQRLPFRQLR 181
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
EI + L LSMGM+ D E AIA GAT VRIG+ IFGER
Sbjct: 182 EIYEHIRASGLPLDTLSMGMSHDLEAAIAEGATIVRIGTAIFGER 226
>gi|229845488|ref|ZP_04465617.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
6P18H1]
gi|89892365|gb|ABD78959.1| HI0090-like protein [Haemophilus influenzae]
gi|229811591|gb|EEP47291.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
6P18H1]
Length = 233
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 113/230 (49%), Gaps = 13/230 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + QKIE + AKR +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIHQKIETACEEAKRNQNTVKLLAVSKTKPISAILSAYQAGQRTFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K I + D+ L FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEK-IQYFESQDINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKA 119
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFY 175
L V IQ+N E KSG+ P + L + GLM IP + + F
Sbjct: 120 PLNVLIQINISDEESKSGLQPEEMLTLAKHIENLPHLCLRGLMAIPAPTNKIAEQEAVFR 179
Query: 176 LLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 180 KMSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKYGSTMVRIGTAIFGAR 229
>gi|264676326|ref|YP_003276232.1| hypothetical protein CtCNB1_0190 [Comamonas testosteroni CNB-2]
gi|262206838|gb|ACY30936.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 275
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 113/230 (49%), Gaps = 21/230 (9%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +++I + R SV L+ VSK +R+A + G + ENK+QEA KW
Sbjct: 30 NLATVQERIAAACQRVGRDPASVRLLPVSKTKPQASLRLAYAAGCRLLGENKVQEAFGKW 89
Query: 66 IPLRKEWDVQLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
++ D++ IG LQ+NK V+ S F ++++ + A L + Q R L V
Sbjct: 90 ESMQDLADLRWSVIGHLQTNKARLVARFASEFQALDSL---RVAEALDRHLQAQGRSLDV 146
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH-----FYLL 177
++QVNT E K G+ P DF+ L V GLM + A+ + + F LL
Sbjct: 147 FVQVNTSGEASKYGLSPEAVPDFIQQLPVFSALRVRGLMTL--ALFSAETERVRRCFILL 204
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E+ + L LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 205 RELRDRLQQSAPAGIELDALSMGMSGDFEIAIEEGATVVRVGQAIFGARP 254
>gi|228472644|ref|ZP_04057404.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga gingivalis
ATCC 33624]
gi|228276057|gb|EEK14813.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga gingivalis
ATCC 33624]
Length = 243
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 119/227 (52%), Gaps = 15/227 (6%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ LQ + +I+ + R V L+ +K V ++I+ AL+ G + AENK+QE K+K
Sbjct: 6 HNLQHVQARIDKACQAVGRDPKEVKLLLATKTVTPERIQQALAAGYTLIAENKVQELKEK 65
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRFLPV 122
+ L+ FIG LQ+NK+ +I+ +DV +E++ R A L ++ + R + V
Sbjct: 66 YEALKATPHTN-HFIGHLQTNKIKDILK-YDVSCVESLDRYDLAEKLHQKLSQAGREMDV 123
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAMGNPKPHFYLLSE 179
+IQVNT E K G+ P + Q L++ GLM I + F LL
Sbjct: 124 FIQVNTSGEESKFGVAPEEALALTQQVAQLPTLHIRGLMTIGLFSAEEDKVRKCFQLLKS 183
Query: 180 IAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I + + + +LSMGM+ D E+AIA GAT VR+G+ IFG+R
Sbjct: 184 IQQQIFALNLPDVQPHELSMGMSGDLEVAIAEGATIVRVGTAIFGQR 230
>gi|33597453|ref|NP_885096.1| hypothetical protein BPP2901 [Bordetella parapertussis 12822]
gi|33573880|emb|CAE38194.1| conserved hypothetical protein [Bordetella parapertussis]
Length = 267
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 103/208 (49%), Gaps = 13/208 (6%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R V L+ VSK VD +IR++ + G ENK+QEA +KW + D++ IG
Sbjct: 43 AGRDPAGVRLLPVSKTVDEARIRMSYAAGCRELGENKVQEAYRKWEAMADLADLRWSVIG 102
Query: 81 SLQSNK---VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
LQ+NK V+ + F +++V + A L + + R L VY+QVNT E K G+
Sbjct: 103 HLQTNKAKLVARFAAEFQALDSV---RLAEALERRLQAEGRALDVYVQVNTSGEASKYGL 159
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP-------HFYLLSEIARECKLTKLS 190
P++ F+ L V GLM + + L E L +LS
Sbjct: 160 HPDEAAAFIRQLPSYGALRVRGLMTLAVLSADAARVRQLRTLRDRLRQEAPAGVSLDELS 219
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGM+ D+E+AI GAT VR+G I+G R
Sbjct: 220 MGMSGDYEIAIEEGATVVRVGQAIYGAR 247
>gi|326315426|ref|YP_004233098.1| hypothetical protein Acav_0608 [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323372262|gb|ADX44531.1| protein of unknown function UPF0001 [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 240
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 110/242 (45%), Gaps = 33/242 (13%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++GN LQ +I + A R SV L+AVSK + +R A GQ F EN +QE
Sbjct: 3 TIGNNLQGVLDRIAQACAGAGRAPSSVRLLAVSKTFGAPAVREAALAGQRAFGENYIQEG 62
Query: 62 KKKWIPLRK---------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
+K + L EW IG +QSNK + FD + TV R KTA LS +
Sbjct: 63 VEKIVALGAPESGLAHALEWHC----IGPVQSNKTRLVAEHFDWVHTVDRPKTAERLSQQ 118
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
L V IQVN K+G+ P++ + + +L + GLM IP P P
Sbjct: 119 RPDHLPALQVCIQVNVDGGATKAGLPPDEVPGLALAVARLPRLRLRGLMAIP----EPAP 174
Query: 173 HFYLLSEIARECK----------------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
F + + + LS+GMT D E AI +G+T VR+GSGIFG
Sbjct: 175 DFAAQFSVHAQARALFDRLRASGAPGLEDFDTLSLGMTADLEAAIHAGSTMVRVGSGIFG 234
Query: 217 ER 218
R
Sbjct: 235 AR 236
>gi|219670058|ref|YP_002460493.1| alanine racemase domain protein [Desulfitobacterium hafniense
DCB-2]
gi|219540318|gb|ACL22057.1| alanine racemase domain protein [Desulfitobacterium hafniense
DCB-2]
Length = 233
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 17/231 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L +Q+I+ +A+ + R ++ L+AVSK + + ++ A GQ FAEN++QE
Sbjct: 1 MDIYGSLSAVRQRIQQAAVKSGRDPSAIKLLAVSKTMSAGTVQRAYEAGQRSFAENRVQE 60
Query: 61 AKKK--WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ K +P EW IG LQ+NKV + ++I ++ R L + +++
Sbjct: 61 WQDKVTQLPADCEW----HLIGRLQTNKVKYLDERINLIHSLDRLSLLETLESQGAQRNI 116
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP------ 172
P +QVN + QK+G++ + +DF+ + V GLM I +P+
Sbjct: 117 IWPTLVQVNIARDSQKAGLLAEEVEDFLREAAGCQHIQVYGLMTIGALGASPEDTQGFFR 176
Query: 173 HFYLLSEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL E ++ L +LSMGM++DF AI G+T +R+G IFGER
Sbjct: 177 ELRLLKERLQQKNLPHVNLKELSMGMSQDFGWAIQEGSTIIRVGRQIFGER 227
>gi|294671422|ref|ZP_06736271.1| hypothetical protein NEIELOOT_03130 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291306899|gb|EFE48142.1| hypothetical protein NEIELOOT_03130 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 231
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 105/213 (49%), Gaps = 8/213 (3%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD 73
I +A A RP +SV LVAV K + IR + GQ F EN +QE +K L D
Sbjct: 15 IARAAAEAGRPSESVRLVAVGKTFPAGDIREVYAAGQRDFGENYIQEWYEKTEDLADLSD 74
Query: 74 VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ 133
+ IG +QSNK + + T+ R KTA LS++ + L V I+VN E
Sbjct: 75 IVWHIIGDVQSNKTKFVAERAHWVHTIGRLKTARRLSVQRPYKMPPLQVCIEVNIAGEAA 134
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF----YLLSEI-ARECK 185
K G+ P++ + L + GLMC+ A + F LL+E+ A
Sbjct: 135 KHGVAPDEAVALACEVAKLPNLKMRGLMCVAKADAGEAELREAFGRMRALLAELNAAGVV 194
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D E+A+A GAT VRIGS IFG R
Sbjct: 195 ADVLSMGMSGDMEIAVACGATHVRIGSAIFGRR 227
>gi|223995373|ref|XP_002287370.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976486|gb|EED94813.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 262
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 123/245 (50%), Gaps = 35/245 (14%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+++ + KQ++E + R SV LVAVSK + + A GQ F EN QE
Sbjct: 19 LNISANIASVKQRMEYAIAANDREAGSVRLVAVSKTKPLELLVAAYETGQRYFGENYAQE 78
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV-----IETVSREKTASLLSLEM-- 113
K + DV FIG LQSNK + +V + IETVS K AS L+
Sbjct: 79 LMTKSTEMPD--DVAWHFIGPLQSNKAAPLVKTVGLNKLACIETVSTIKLASKLNRAAET 136
Query: 114 ------IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ----LNVEGLMCI 163
+ + L +YIQVNT E KSG+ P + + L +Q + L+++GLM I
Sbjct: 137 WNEESGSDEKKKLGIYIQVNTSGEDSKSGVTPGA--EVIDLVKQITEECSTLSIDGLMTI 194
Query: 164 PPAMGNPKPHFYLLS------EIA----RECKLTKLSMGMTRDFELAIASGATSVRIGSG 213
G P + S E+A ++ K KLSMGM+ DFE+AIA GATSVR+GS
Sbjct: 195 ----GAPGDYTCFDSLAKCREEVAGVLDKDPKELKLSMGMSGDFEVAIAKGATSVRVGST 250
Query: 214 IFGER 218
IFGER
Sbjct: 251 IFGER 255
>gi|168242903|ref|ZP_02667835.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|194449587|ref|YP_002047088.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194407891|gb|ACF68110.1| alanine racemase family [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|205338194|gb|EDZ24958.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
Length = 234
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 111/231 (48%), Gaps = 18/231 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLR--KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + K D+ FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEDLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP P+ + E
Sbjct: 123 LNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPA----PESDYVRQFE 178
Query: 180 IARECKLT------------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 179 VARQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|71657511|ref|XP_817270.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70882450|gb|EAN95419.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 252
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/219 (39%), Positives = 113/219 (51%), Gaps = 21/219 (9%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
A RP V+LVA SK ++ CG F EN +QE +K L K D+Q
Sbjct: 28 AASGGRP---VTLVAASKTKSPACVQALYDCGHRCFGENYVQELVEKAGVLPK--DIQWH 82
Query: 78 FIGSLQSNKVSEIVSLFD---VIETVSREKTASLLSLEMI--KQSRFLPVYIQVNTGYEI 132
FIG LQSNKV E++ D +++TV EK A+ L+ + + R L VYIQVNT E
Sbjct: 83 FIGHLQSNKVKELLEGVDGLYLVQTVDSEKLATKLNNGCVTYRGGRSLNVYIQVNTSGEE 142
Query: 133 QKSGIMP-NQTKDFVILCRQKY-QLNVEGLMCI--PPAMGNPKPHFYLL---SEIARECK 185
KSG P N T + ++ LNV G+M I P P+ LL +AR
Sbjct: 143 SKSGTEPGNPTVELAQYIQEHCKHLNVAGVMTIGMPDYTSRPENFECLLQVREAVARALS 202
Query: 186 LTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L LSMGMT DFE AI G+T VR+G+ +FG+R C
Sbjct: 203 LPADSLALSMGMTGDFENAIKMGSTVVRVGTALFGKRYC 241
>gi|239817773|ref|YP_002946683.1| alanine racemase domain protein [Variovorax paradoxus S110]
gi|239804350|gb|ACS21417.1| alanine racemase domain protein [Variovorax paradoxus S110]
Length = 232
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 106/230 (46%), Gaps = 17/230 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+G+ LQ K +I + R V L+AVSK + +R A + GQ F EN +QE
Sbjct: 4 IGDDLQQVKNRIAKACAEHGRNPAEVRLLAVSKTFGPEAVREAHAAGQRAFGENYVQEGL 63
Query: 63 KKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L +++ IG LQSNK + FD + + R K A LS + L
Sbjct: 64 DKIAALSDLRAELEWHCIGPLQSNKTRPVAEHFDWVHGIDRLKIAERLSAQRPAHLPPLQ 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
V +QVN KSG+ P + L + GLM IP P P F E+
Sbjct: 124 VCLQVNVDGGANKSGVPPEEALPLARAVAALPHLRLRGLMAIP----EPAPDFAAQRELC 179
Query: 181 --ARE---------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
AR +L LS+GM+ D E A+++G+T VRIG+ IFG RP
Sbjct: 180 LRARAVYDAIRDAGVELDTLSLGMSADLEAAVSAGSTMVRIGTAIFGGRP 229
>gi|311109274|ref|YP_003982127.1| alanine racemase [Achromobacter xylosoxidans A8]
gi|310763963|gb|ADP19412.1| alanine racemase, N-terminal domain protein 3 [Achromobacter
xylosoxidans A8]
Length = 239
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 112/229 (48%), Gaps = 13/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L +Q+I ++ A R DSV+L+ VSK IR A++ G + ENK QE
Sbjct: 6 TMAGRLAQIQQRIADACARAGRSPDSVTLLPVSKTFGVDAIREAMALGLTRYGENKTQEI 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K L +Q IG LQ+NK + ++++ R + A L + + R L
Sbjct: 66 RQKAAAL-DGLGLQWVLIGHLQTNKARDAARDAAEVQSLDRVELAEALHRRLANEGRTLD 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIP---PAMGNPKPHFYLL 177
V +QV T E K G+ P F+ + L V+GLM + P + F L
Sbjct: 125 VLVQVKTSSEPSKYGMDPADVPAFLRRIATDFPTLRVQGLMTLAVNSPDAAEVRACFRAL 184
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + L +LSMGM+ DFELAI G+T VRIGS IFG R
Sbjct: 185 RELRDRLRQENPPGVSLDRLSMGMSGDFELAIEEGSTEVRIGSAIFGAR 233
>gi|299533817|ref|ZP_07047188.1| hypothetical protein CTS44_23491 [Comamonas testosteroni S44]
gi|298718233|gb|EFI59219.1| hypothetical protein CTS44_23491 [Comamonas testosteroni S44]
Length = 274
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 114/230 (49%), Gaps = 21/230 (9%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +++I + A R SV L+ VSK +R+A + G + ENK+QEA KW
Sbjct: 29 NLATVQERIAAACQRAGRDPASVRLLPVSKTKPQASLRLAYAAGCRLLGENKVQEAFGKW 88
Query: 66 IPLRKEWDVQLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
++ D++ IG LQ+NK V+ S F ++++ + A L + Q R L V
Sbjct: 89 ESMQDLADLRWSVIGHLQTNKARLVARFASEFQALDSL---RVAEALDRHLQGQGRSLDV 145
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH-----FYLL 177
++QVNT E K G+ P F+ L V GLM + A+ + + F LL
Sbjct: 146 FVQVNTSGEASKYGLNPEDVPGFIQQLPVFSALRVRGLMTL--ALFSAEAERVRRCFILL 203
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E+ + + L LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 204 RELRDQLQQSAPAGMELDALSMGMSGDFEIAIEEGATVVRVGQAIFGARP 253
>gi|88705480|ref|ZP_01103191.1| conserved hypothetical protein [Congregibacter litoralis KT71]
gi|88700570|gb|EAQ97678.1| conserved hypothetical protein [Congregibacter litoralis KT71]
Length = 229
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 110/207 (53%), Gaps = 13/207 (6%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL--RFI 79
+RP DSV ++AVSK ++ +R A + G F EN LQEA +K ++ D+ L FI
Sbjct: 25 QRPPDSVRVMAVSKTQSAEAVRDAAAAGLTDFGENYLQEALEK---IKSCADLALTWHFI 81
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G +QSNK I FD + +V REK LS + L + IQVN E KSGI P
Sbjct: 82 GPIQSNKTRAIAEHFDWVHSVDREKILRRLSEQRDPSMAPLNLCIQVNVSGEDSKSGITP 141
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIP-PA--MGNPKPHFYLLSEIARECK-----LTKLSM 191
Q + L Q + + GLM IP PA G K L+ + + + L LS+
Sbjct: 142 RQLAPILALATQLPNIRLRGLMAIPAPAEDFGAQKAACDSLASLFEDARKEHPTLDTLSI 201
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D E A+A+G+T VRIG+ IFG R
Sbjct: 202 GMSADLEAAVAAGSTMVRIGTAIFGAR 228
>gi|284044976|ref|YP_003395316.1| alanine racemase domain protein [Conexibacter woesei DSM 14684]
gi|283949197|gb|ADB51941.1| alanine racemase domain protein [Conexibacter woesei DSM 14684]
Length = 222
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 106/210 (50%), Gaps = 14/210 (6%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ--EAKKKWIPL 68
+Q+I+ +A +A R V L+A K V + + V + G + EN+ Q EAK P
Sbjct: 21 RQRIDEAAAIAGRDPGEVELLAAVKYVPLESVGVLAAAGITLVGENRAQDLEAKAAAHPG 80
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
WD FIG LQS KV +I+ +I +V+ + L + L V I+VN
Sbjct: 81 LFTWD----FIGHLQSRKVKQILPWVRLIHSVASDSVLDQLGKHGAARPD-LEVLIEVNV 135
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECK 185
E KSG+ P FV C + V GLM +PP P+ HF L E+A
Sbjct: 136 AGEASKSGVAPADLAAFVERC----PVTVSGLMTMPPLAAAPEDNRRHFAALRELAASHG 191
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L +LSMG ++D+E+A+ GAT VR+GS ++
Sbjct: 192 LRRLSMGTSQDYEVAVEEGATIVRLGSTLY 221
>gi|213403758|ref|XP_002172651.1| alanine racemase [Schizosaccharomyces japonicus yFS275]
gi|212000698|gb|EEB06358.1| alanine racemase [Schizosaccharomyces japonicus yFS275]
Length = 240
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 119/214 (55%), Gaps = 26/214 (12%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQS 84
V LVAVSK + + A + GQ F EN +QE AK + +P DV FIG++QS
Sbjct: 24 DVRLVAVSKFHPVESLMEAYNAGQRHFGENYMQELLAKAQVMPK----DVNWHFIGAMQS 79
Query: 85 NKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
+K +I S+ ++ IETV EK A L++ + ++ L VY+QVNT E KSG+ P
Sbjct: 80 SKCKKIASIENLWCIETVDTEKKARLINSAREELNKPLRVYVQVNTSGEDNKSGVAP--- 136
Query: 143 KDFVILCR----QKYQLNVEGLMCIPPAMGN----PKPHFYLLSEIARE------CKLTK 188
+D + LC+ L ++G+M I + P F L ++ ++ CKL +
Sbjct: 137 EDALPLCKFIKDSCSHLQLQGIMTIGSFTNSLNEKTNPDFEKLIQLRKQLENDLSCKL-E 195
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+SMGM+ D+ELAI G+ +VR+G IFGERP +
Sbjct: 196 VSMGMSADYELAIQYGSDNVRVGRTIFGERPVEN 229
>gi|210612737|ref|ZP_03289452.1| hypothetical protein CLONEX_01654 [Clostridium nexile DSM 1787]
gi|210151430|gb|EEA82438.1| hypothetical protein CLONEX_01654 [Clostridium nexile DSM 1787]
Length = 231
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 119/231 (51%), Gaps = 13/231 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L LQ ++KI ++ AKR + V+L+AVSK ++ + G F ENK+QE
Sbjct: 2 LSENLQQVEEKIADACKRAKRERSEVTLIAVSKTKPISMLQEIYNEGIRCFGENKVQELT 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ L D++ IG LQ NKV IV ++I +V + A ++ E K+ +
Sbjct: 62 EKYEQLPS--DIKWHMIGHLQRNKVKYIVDKTELIHSVDSLRLAETINQEAAKKDVVSNI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
I+VN E K G+ + + + ++GLM I P + NP +P F L +
Sbjct: 120 LIEVNVAEEESKFGVKVEEVLPLIEKIALFPNIQIKGLMTIAPYVKNPEENRPIFRRLRK 179
Query: 180 IARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ + ++ LSMGMT D+E+AI GAT VR+G+GIFGER T
Sbjct: 180 LSVDINAKNIDNVNVSILSMGMTNDYEVAIEEGATMVRVGTGIFGERNYTT 230
>gi|317405236|gb|EFV85574.1| alanine racemase [Achromobacter xylosoxidans C54]
Length = 275
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 107/233 (45%), Gaps = 27/233 (11%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L V +++ + R V L+ VSK +D +IR+A + G + ENK+QEA +K
Sbjct: 39 HNLAVIHARMDAACRRVGRDPAGVRLLPVSKTMDESRIRLAHAAGCRLLGENKIQEAHRK 98
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
W D++ IG LQ+NK + + + + A L + + R L VY+
Sbjct: 99 WQNTADLPDLRWSVIGHLQTNKAKLMAQFASEFQALDSLRLAEALDRRLQAEGRALDVYV 158
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVNT E K G+ P+ F+ L V G M + A+ F +E R+C
Sbjct: 159 QVNTSGEPSKYGLAPDDVAAFIQALPAFSSLRVRGFMTL--AL------FSSEAERVRQC 210
Query: 185 -------------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 211 FVLLRGLRDRLRQDAPAGISLDELSMGMSGDFEIAIEEGATVVRVGQAIFGAR 263
>gi|73542486|ref|YP_297006.1| hypothetical protein Reut_A2801 [Ralstonia eutropha JMP134]
gi|72119899|gb|AAZ62162.1| Protein of unknown function UPF0001 [Ralstonia eutropha JMP134]
Length = 229
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 104/225 (46%), Gaps = 9/225 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ LQ + I +A A R + V L+AVSK V +R A GQ F EN +QE
Sbjct: 4 IAANLQAVYRGIAAAAQQAGRTPEEVVLLAVSKTVAPGIVREAFEAGQRAFGENYVQEGV 63
Query: 63 KKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K + L + FIG LQSNK + FD + + R K A LS + L
Sbjct: 64 EKIVALADLRSQITWHFIGPLQSNKTRLVAEHFDWVHALDRLKIAQRLSEQRPAGMAPLQ 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
V IQVN E KSG+ P + + L + GLM IP +P F +
Sbjct: 124 VCIQVNISNEASKSGVAPGEVPELARAVAALPGLRLRGLMAIPEPATDPAAQREPFTAMR 183
Query: 179 EI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ A +L LSMGM+ D AIA GAT VRIG+ IFG R
Sbjct: 184 NLLQSLQAEGLQLDTLSMGMSGDMNAAIAEGATIVRIGTAIFGAR 228
>gi|121592853|ref|YP_984749.1| alanine racemase domain-containing protein [Acidovorax sp. JS42]
gi|120604933|gb|ABM40673.1| alanine racemase domain protein [Acidovorax sp. JS42]
Length = 238
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 113/237 (47%), Gaps = 25/237 (10%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + LQ +++I + A RP D+V+L+AVSK + +R A GQ F EN +QEA
Sbjct: 3 TIASNLQNVRERIARACTAAGRPPDAVALLAVSKTFGPEAVRDAALAGQRRFGENYIQEA 62
Query: 62 KKKW-------IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
+K +P EW IG +QSNK + FD + TV R KTA LS +
Sbjct: 63 VEKMALVAALGLPQPLEWHC----IGPVQSNKTRLVAQHFDWVHTVDRPKTAQRLSDQRP 118
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
L V IQVN K+G+ + +L + G+M IP + +
Sbjct: 119 DNLPALQVCIQVNVDGGATKAGVPAEEALALAQAVAALPRLTLRGVMSIPDPVPDEAAQL 178
Query: 175 YLLSEIAREC-------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+L + R+ + LS+GMT D E A+ +G+T VR+GSGIFG R
Sbjct: 179 AVLLRV-RQVFDTLRAQGGPGFEAVDTLSLGMTGDLEAAVRAGSTMVRVGSGIFGAR 234
>gi|56461074|ref|YP_156355.1| TIM-barrel fold family protein [Idiomarina loihiensis L2TR]
gi|56180084|gb|AAV82806.1| Predicted enzyme with a TIM-barrel fold [Idiomarina loihiensis
L2TR]
Length = 240
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 111/206 (53%), Gaps = 17/206 (8%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD--VQLRFIGSLQS 84
SV L+AVSK + I+ A++ GQ+ F EN +QEA K L+++ VQ FIG +QS
Sbjct: 36 SVKLLAVSKKHSLEAIKAAIAAGQMHFGENYVQEAVAKITQLKEQTTDPVQWHFIGPVQS 95
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK- 143
NK +I FD +++V REK A L+ + S+ L + +QVN + KSG+ P Q +
Sbjct: 96 NKTKDIAQHFDWVQSVEREKIARRLNEQRPDDSQQLNLLLQVNIDDDDNKSGLAPEQVEA 155
Query: 144 --DFVILCRQKYQLNVEGLMCIPPAMGNPKP------HFYLLSEIAREC---KLTKLSMG 192
++V+ C +L + GLM I A Y L + ++ ++ LSMG
Sbjct: 156 LAEYVMNCP---KLKLRGLMTILKAGTTEDEREKSFQQMYKLYQQLQQTYGEQIDTLSMG 212
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D A+ GA VRIG+ IFGER
Sbjct: 213 MSGDMRQAVLEGANMVRIGTAIFGER 238
>gi|260767465|ref|ZP_05876402.1| hypothetical protein VFA_000516 [Vibrio furnissii CIP 102972]
gi|260617577|gb|EEX42759.1| hypothetical protein VFA_000516 [Vibrio furnissii CIP 102972]
Length = 235
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 108/228 (47%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ L+ +IEN+ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNLEHITSQIENAQQKCGRSRSSVQLLAVSKTKPVEAILEAAEAGQRAFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + E +++ FIG LQSNK I FD + T+ R K A LS +
Sbjct: 63 CDKVQFFAEHHPELNLEWHFIGPLQSNKTRLIAEHFDWMHTIDRAKIAQRLSEQRPAHLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSG+ N L L + GLM IP P + F
Sbjct: 123 PLQVLIQVNTSGEASKSGVSENDLFTLAELISSLPNLTLRGLMSIPENVPDYASQLAAFR 182
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ + + + LSMGM+ D AI +G+T VRIG+ IFG+R
Sbjct: 183 QLAALKDQLAEKYDGIDTLSMGMSGDMAAAIEAGSTIVRIGTAIFGQR 230
>gi|83816855|ref|YP_444832.1| hypothetical protein SRU_0694 [Salinibacter ruber DSM 13855]
gi|83758249|gb|ABC46362.1| conserved hypothetical protein TIGR00044 [Salinibacter ruber DSM
13855]
Length = 233
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 14/227 (6%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKK 63
+++ +++I + A R D +++VAVSK + I G F EN+ ++ K
Sbjct: 4 RVESIRERIAQACGRAGRSPDEITVVAVSKTFPMQAIASGTGVGLEHFGENRARQLRDKA 63
Query: 64 KWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K P E DV+ +G LQ NK I D + + + A L+ K R LP
Sbjct: 64 KARPGAVEGGDVKWHMVGHLQRNKAKFIARHADWFDALDSPRLAEELNKRAAKNDRVLPC 123
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+QVN + QK G+ P++T +++ C Q L VEGLM + + +P + F + E
Sbjct: 124 LVQVNITGDDQKYGLAPSETHEYLDHCAQYDHLAVEGLMALGSFVDDPEDVRGEFQKMRE 183
Query: 180 IAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + ++T+LS+GM+ DFE+AI G+T +R+G+ IFG R
Sbjct: 184 LFDTYDASGNPQVEMTELSIGMSNDFEVAIEEGSTMIRLGTSIFGPR 230
>gi|329922721|ref|ZP_08278273.1| pyridoxal phosphate enzyme, YggS family [Paenibacillus sp. HGF5]
gi|328942063|gb|EGG38346.1| pyridoxal phosphate enzyme, YggS family [Paenibacillus sp. HGF5]
Length = 229
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 117/236 (49%), Gaps = 31/236 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL ++ +Q+I + + R ++ V+++AV+K V L G + EN+ Q+
Sbjct: 1 MSLKERIDQVEQRITEACARSGRDRNDVNMIAVTKYVSLDMTASVLDHGLLHIGENRWQD 60
Query: 61 AKKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR-------EKTASLLSL 111
A+ KW L R W FIG LQ+NKV +++ F I ++ R EK A+ L+L
Sbjct: 61 AQAKWNALGSRGTW----HFIGHLQTNKVRDVIDKFQYIHSLDRLSLAHELEKRAAALNL 116
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMG 168
+ + +QVN E K G+ P Q +F+ + V GLM + P +
Sbjct: 117 Q-------VSALMQVNISGEESKYGLPPEQAAEFLKEINSLSHVKVTGLMTMAPYESSAE 169
Query: 169 NPKPHFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+P F L ++ E LT+LSMGM+ DFE+AI GAT VR+GS + G
Sbjct: 170 QTRPVFRGLRQLRDELNEQALTAEPLTELSMGMSNDFEVAIEEGATWVRLGSILVG 225
>gi|260552476|ref|ZP_05825852.1| TIM-barrel fold family protein [Acinetobacter sp. RUH2624]
gi|260405283|gb|EEW98779.1| TIM-barrel fold family protein [Acinetobacter sp. RUH2624]
Length = 235
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 110/222 (49%), Gaps = 7/222 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q Q+I + A+R ++V L+AVSK S+++R + GQ F EN LQEA
Sbjct: 9 LQDARQHVLQQIRTACEHAQRAPETVQLLAVSKTHPSERLREMYAAGQRAFGENYLQEAL 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K I + D++ FIG +Q NK + FD + V R A LS + L +
Sbjct: 69 DK-IEALHDLDIEWHFIGHVQRNKTKHLAEEFDWVHGVDRLIIAERLSNQRGDDQAALNI 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-----PAMGNPKPHFYLL 177
+QVN + K G P + + V Q ++ + GLM IP A + K F +
Sbjct: 128 CLQVNIDGQDTKDGCAPEEVAELVAQISQLPKIKLRGLMVIPAPDNIAAFADAKKLFDEV 187
Query: 178 SE-IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E A LSMGM+ D + AI +G+T VR+G+ +FG+R
Sbjct: 188 KEQHAHAQDWDTLSMGMSGDLDAAIVAGSTMVRVGTALFGKR 229
>gi|325121225|gb|ADY80748.1| conserved hypothetical protein [Acinetobacter calcoaceticus PHEA-2]
Length = 230
Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 110/222 (49%), Gaps = 7/222 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q Q+I+ + A+R ++V L+AVSK S+ +R + GQ F EN LQEA
Sbjct: 4 LQDARQHVLQQIQTACEHAQRAPETVQLLAVSKTHPSESLREMYAAGQRAFGENYLQEAL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + ++ D++ FIG +Q NK + FD + V R A LS + L +
Sbjct: 64 DK-VEALQDLDIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQRGNDQSALNI 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-----PAMGNPKPHFYLL 177
+QVN + K G P + + V Q ++ + GLM IP A + K F +
Sbjct: 123 CLQVNIDGQDSKDGCAPEEVAELVGQMSQLPKIKLRGLMVIPAPDNTAAFADAKALFDAV 182
Query: 178 -SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 183 KDQHTHPEDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGAR 224
>gi|319775029|ref|YP_004137517.1| hypothetical protein HICON_03630 [Haemophilus influenzae F3047]
gi|329123064|ref|ZP_08251635.1| YggS family pyridoxal phosphate enzyme [Haemophilus aegyptius ATCC
11116]
gi|317449620|emb|CBY85826.1| conserved hypothetical protein [Haemophilus influenzae F3047]
gi|327471995|gb|EGF17435.1| YggS family pyridoxal phosphate enzyme [Haemophilus aegyptius ATCC
11116]
Length = 237
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 113/233 (48%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K +E +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQEVNLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYL 176
L V IQ+N E KSGI P + L + GLM IP + + F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIAEQEAMFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|88801062|ref|ZP_01116610.1| hypothetical protein MED297_19052 [Reinekea sp. MED297]
gi|88776201|gb|EAR07428.1| hypothetical protein MED297_19052 [Reinekea sp. MED297]
Length = 235
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 108/226 (47%), Gaps = 9/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+S+ ++L KI + RP+ V+LVAVSK + ++R A G F EN QE
Sbjct: 4 LSVTSRLAQVNAKIHAACTKNDRPESEVTLVAVSKTKPAARVREAWEAGARHFGENYAQE 63
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L+ + Q FIG LQSNK I D + T+ R K A LS + L
Sbjct: 64 LAEKVQELKLD-KAQWHFIGPLQSNKTRLIAEHADWVHTIDRLKIARRLSDQRPPDRAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
V IQVN + K+G+ +Q L + GLM I A F L
Sbjct: 123 NVLIQVNISDDPAKAGVDLSQIAGLADRIATLPNLTLRGLMTITAANLDEATLAAQFREL 182
Query: 178 SE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I T++SMGM++DFELAIA+GAT VR+GS IFG R
Sbjct: 183 KNAQADLITHHPTCTEVSMGMSQDFELAIANGATMVRVGSDIFGHR 228
>gi|329910471|ref|ZP_08275312.1| hypothetical protein IMCC9480_164 [Oxalobacteraceae bacterium
IMCC9480]
gi|327546168|gb|EGF31216.1| hypothetical protein IMCC9480_164 [Oxalobacteraceae bacterium
IMCC9480]
Length = 233
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 112/227 (49%), Gaps = 11/227 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + LQ I+ +A R S++L+AVSK D+ + A + GQ F EN LQEA
Sbjct: 4 ISSNLQAVHGAIDAAAQAVSRLPHSITLLAVSKTFDAAAVLEAAAAGQRAFGENYLQEAL 63
Query: 63 KKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K +R E ++ FIG +QSNK I FD + +V REK A LS +
Sbjct: 64 DKIAAVRLAQPELILEWHFIGPIQSNKTRPIAESFDWVHSVEREKIARRLSDQRPAGLPP 123
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PA--MGNPKPHFYL 176
L + +QVN E KSG+ + +L + GLM IP P+ + + F
Sbjct: 124 LNICLQVNISGEASKSGVPAGEALAVAQAIAAMPRLGLRGLMAIPEPSTVVAEQRAAFRQ 183
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + +C+ + LSMGM+ D AIA GAT VR+G+ IFG R
Sbjct: 184 LHVLFEQCRAAGLPMDTLSMGMSSDLPAAIAEGATIVRVGTAIFGAR 230
>gi|255319900|ref|ZP_05361101.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter
radioresistens SK82]
gi|255303033|gb|EET82249.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter
radioresistens SK82]
Length = 231
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 108/224 (48%), Gaps = 10/224 (4%)
Query: 5 NKLQVFKQK----IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
NKLQ + + I ++ A R ++V L+AVSK + +R GQ F EN LQE
Sbjct: 2 NKLQDARDQVLAQIREASHKAGRADETVQLLAVSKTHSAGVLREMYQAGQRSFGENYLQE 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K L+ D++ FIG +Q NK + FD + V R A LS + +Q L
Sbjct: 62 ALEKIHSLQDLNDIEWHFIGHVQRNKTKLLAENFDWVHGVDRLIIAERLSAQRPEQRAAL 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE 179
+ IQVN + K G P Q + V + Q L + GLM IP P + H L
Sbjct: 122 NICIQVNIDGQESKDGCTPEQVAELVKMISQLPNLCLRGLMVIPAPGHTDAFEHTRQLFN 181
Query: 180 IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R LSMGM+ D E A+ +G+T VRIG+ +FG R
Sbjct: 182 QVRTFHAHPQVWDTLSMGMSADLEAAVVAGSTMVRIGTALFGTR 225
>gi|262379205|ref|ZP_06072361.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|262298662|gb|EEY86575.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
Length = 236
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 108/224 (48%), Gaps = 10/224 (4%)
Query: 5 NKLQVFKQK----IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
NKLQ + + I ++ A R ++V L+AVSK + +R GQ F EN LQE
Sbjct: 7 NKLQDARDQVLAQIREASHKAGRADETVQLLAVSKTHSAGVLREMYQAGQRSFGENYLQE 66
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K L+ D++ FIG +Q NK + FD + V R A LS + +Q L
Sbjct: 67 ALEKIHSLQDLNDIEWHFIGHVQRNKTKLLAENFDWVHGVDRLIIAERLSAQRPEQRAAL 126
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE 179
+ IQVN + K G P Q + V + Q L + GLM IP P + H L
Sbjct: 127 NICIQVNIDGQESKDGCTPEQVAELVKMISQLPNLCLRGLMVIPAPGHTDAFEHTRQLFN 186
Query: 180 IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R LSMGM+ D E A+ +G+T VRIG+ +FG R
Sbjct: 187 QVRTFHAHPQVWDTLSMGMSADLEAAVVAGSTMVRIGTALFGTR 230
>gi|225076826|ref|ZP_03720025.1| hypothetical protein NEIFLAOT_01877 [Neisseria flavescens
NRL30031/H210]
gi|224951865|gb|EEG33074.1| hypothetical protein NEIFLAOT_01877 [Neisseria flavescens
NRL30031/H210]
Length = 245
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 111/224 (49%), Gaps = 8/224 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L Q + ++ +A A RP ++V LVAVSK + IR + GQ F EN +QE
Sbjct: 12 LQQNYQDVNRAVKQAAEAAGRPANAVKLVAVSKTFPADDIREVYAAGQRDFGENYIQEWF 71
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L D+ IG +QSNK + + T+ R KTA LS + + L V
Sbjct: 72 EKTETLADLPDIVWHVIGDVQSNKTKFVAERAHWVHTIGRLKTARRLSEQRPSEMPPLQV 131
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY---- 175
I+VN E K G+ P++ + + + V GLMC+ A + + F+
Sbjct: 132 CIEVNIAAEEAKHGVAPDEAVALALEVAKLPNIKVRGLMCVAKADSSDDELRSQFHTMQR 191
Query: 176 LLSEI-ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL+E+ A + LSMGM+ D +A+ GAT VRIGS IFG R
Sbjct: 192 LLAELNAAGVEADVLSMGMSGDMPIAVECGATHVRIGSAIFGRR 235
>gi|294506685|ref|YP_003570743.1| hypothetical protein SRM_00870 [Salinibacter ruber M8]
gi|294343013|emb|CBH23791.1| conserved hypothetical protein [Salinibacter ruber M8]
Length = 252
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 14/227 (6%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKK 63
+++ +++I + A R D +++VAVSK + I G F EN+ ++ K
Sbjct: 23 RVESIRERIAQACGRAGRSPDEITVVAVSKTFPMQAIASGTGVGLEHFGENRARQLRDKA 82
Query: 64 KWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K P E DV+ +G LQ NK I D + + + A L+ K R LP
Sbjct: 83 KARPGAVEGGDVKWHMVGHLQRNKAKFIARHADWFDALDSPRLAEELNKRAAKNDRVLPC 142
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+QVN + QK G+ P++T +++ C Q L VEGLM + + +P + F + E
Sbjct: 143 LVQVNITGDDQKYGLAPSETHEYLDHCAQYDHLAVEGLMALGSFVDDPEDVRGEFQKMRE 202
Query: 180 IAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + ++T+LS+GM+ DFE+AI G+T +R+G+ IFG R
Sbjct: 203 LFDTYDASGNPQVEMTELSIGMSNDFEVAIEEGSTMIRLGTSIFGPR 249
>gi|270308072|ref|YP_003330130.1| alanine racemase domain protein [Dehalococcoides sp. VS]
gi|270153964|gb|ACZ61802.1| alanine racemase domain protein [Dehalococcoides sp. VS]
Length = 220
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 114/215 (53%), Gaps = 20/215 (9%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL---RKEWDVQ 75
ILA+ P D V AV K S+ I A+ G I N L EA++ + PL + EW
Sbjct: 12 ILAELPPDVVLEAAVKKRQPSE-ILAAIDAGIKIIGHNYLTEAEETY-PLIGDKAEW--- 66
Query: 76 LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKS 135
FIG LQSNK +IV F V+ETV + AS L+ + + L V+I++N+G E QKS
Sbjct: 67 -HFIGKLQSNKCKKIVRRFSVVETVDSIEIASELNRRAAEIDKILSVFIEINSGREKQKS 125
Query: 136 GIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL----LSEIAR----EC 184
G++P +T + L + GLM + PA+ P + F L EIA
Sbjct: 126 GVLPEETVELAKRISCLSNLKLTGLMTMGPALEAPEELRTIFRLTKIKFDEIASMGLPNT 185
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+L LSMGM+ +++A+ GA VR+G+ IFG RP
Sbjct: 186 ELQFLSMGMSGSYKVAVQEGANLVRLGTRIFGPRP 220
>gi|289578636|ref|YP_003477263.1| alanine racemase domain protein [Thermoanaerobacter italicus Ab9]
gi|289528349|gb|ADD02701.1| alanine racemase domain protein [Thermoanaerobacter italicus Ab9]
Length = 234
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 112/218 (51%), Gaps = 12/218 (5%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
K+ I+ A+ R + + +VA +K + I+ A++CG ENK+QE +K+ L++
Sbjct: 13 KENIKEHALKVNRNPEEILIVAATKTFGVETIKEAIACGITDIGENKVQELNEKYPYLKE 72
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
E V FIG LQ NKV I+ +I ++ K A + +++ + +++N G
Sbjct: 73 E--VNFHFIGHLQRNKVKYIIDKVKLIHSLDSIKLAEEIDKRAKQKNLIIDCLVEINIGG 130
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM--GNPKPHFYLLSEIARECKLTK 188
E K GI P +FV + + + GLM I P + +P+F + E+ E K K
Sbjct: 131 EESKYGIPPEGMHNFVKEIEKYDNIRIRGLMTIAPYLPPEEVRPYFRKMKELFEELKEIK 190
Query: 189 --------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D+ +A+ GA VRIG+ IFG+R
Sbjct: 191 QYNVEVEFLSMGMSNDYWVAVEEGANIVRIGTSIFGQR 228
>gi|153808274|ref|ZP_01960942.1| hypothetical protein BACCAC_02562 [Bacteroides caccae ATCC 43185]
gi|149129177|gb|EDM20393.1| hypothetical protein BACCAC_02562 [Bacteroides caccae ATCC 43185]
Length = 222
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 113/214 (52%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+LA+ P+ V LVAVSK ++ I A GQ IF E+K+QE K+ L K D++ F
Sbjct: 10 VLAELPQ-GVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQEMTAKYESLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQSNK+ ++ +I + K + ++ + +K R + +Q++ E K G
Sbjct: 67 IGHLQSNKIKYMIPYVAMIHGIDTYKLLAEVNKQAVKAGRIINCLLQIHVAQEETKFGFS 126
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKP---HFYLLSEIARECKLT------ 187
P++ KD + K +V GLM + N + F LL + +E K T
Sbjct: 127 PDECKDMLNTGEWKELTHVRICGLMGMASNTDNVEQINREFCLLDRLFKEIKTTWFADSD 186
Query: 188 ---KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 187 AFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGER 220
>gi|219872205|ref|YP_002476580.1| succinyl-diaminopimelate desuccinylase with a TIM-barrel fold
[Haemophilus parasuis SH0165]
gi|219692409|gb|ACL33632.1| succinyl-diaminopimelate desuccinylase with a TIM-barrel fold
[Haemophilus parasuis SH0165]
Length = 227
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 110/226 (48%), Gaps = 8/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L Q+I+ A RP+ SV L+AVSK I A+ GQ F EN +QE
Sbjct: 1 MSISQNLATISQQIQQYCQQANRPEQSVKLLAVSKTKPISAIAEAIEAGQRAFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + ++ FIG LQSNK + FD ++T+ R K A LS + + L
Sbjct: 61 GIEKIQHFAENDTLEWHFIGLLQSNKTRVVAEHFDWVQTIDRLKIAQRLSEQRPEHLPVL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQ+N E KSGI + + Q +L + GLM IP P+ L+++
Sbjct: 121 NVLIQINISDEASKSGISAKEMLELATQISQLPRLKLRGLMAIPKPESEPEQQKIALAQM 180
Query: 181 --------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + LSMGM+ D AI G+T VRIG+ IFG R
Sbjct: 181 NELFLQLQSQFEGIDTLSMGMSDDMPSAIECGSTMVRIGTAIFGAR 226
>gi|16272064|ref|NP_438263.1| hypothetical protein HI0090 [Haemophilus influenzae Rd KW20]
gi|260580606|ref|ZP_05848433.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
gi|1723862|sp|P44506|Y090_HAEIN RecName: Full=UPF0001 protein HI_0090
gi|1573041|gb|AAC21768.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|260092668|gb|EEW76604.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
Length = 237
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 109/233 (46%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQGINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH------ 173
L V IQ+N E KSGI P + L + GLM IP N
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDNIAEQENAFRK 180
Query: 174 ----FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
F L ++ ++ LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MLELFEQLKQVLPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|297617004|ref|YP_003702163.1| alanine racemase domain protein [Syntrophothermus lipocalidus DSM
12680]
gi|297144841|gb|ADI01598.1| alanine racemase domain protein [Syntrophothermus lipocalidus DSM
12680]
Length = 233
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 29/227 (12%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+++I +A + R + ++LVAVSK VD + I A G F EN++QE ++P K
Sbjct: 16 RERIRRAAQRSGRQEQEITLVAVSKTVDLETISRAAQLGITHFGENRVQE----FLPKYK 71
Query: 71 EW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSR-------EKTASLLSLEMIKQSRFLPV 122
E +Q FIG LQ+NKV +++ +I ++ R + A LL L + V
Sbjct: 72 ELPHLQWHFIGHLQTNKVKDVIGKACLIHSLDRWRLAEYIDGKAKLLGLAEVD------V 125
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
++VN E K G++P+ F+ + ++ V GLM + P + +P +P F L
Sbjct: 126 LLEVNVSGERSKYGLLPSDVPAFLDAVERLERVRVRGLMTVAPQVDDPELARPVFKKLRS 185
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I R ++ LSMGMT+DFE+A+ G+ VR+G+ IFG R
Sbjct: 186 IFEDIKKRQYRNTEMLYLSMGMTQDFEVAVEEGSNMVRVGTAIFGAR 232
>gi|52425760|ref|YP_088897.1| hypothetical protein MS1705 [Mannheimia succiniciproducens MBEL55E]
gi|52307812|gb|AAU38312.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 230
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 108/229 (47%), Gaps = 11/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + N L+ + I + A P +SV L+AVSK + + A GQ F EN +QE
Sbjct: 1 MEIANNLKQIHKNIVSICQNAGLPSNSVKLLAVSKTKPVEDLEQAYQAGQRAFGENYVQE 60
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + K D++ FIG LQSNK + FD ++TV REK A L+ +
Sbjct: 61 GVEKIEFFQAKHPDMEWHFIGPLQSNKTRLVAEYFDWMQTVDREKIAIRLNEQRPANKSP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN--------PK 171
L V IQ+N E KSGI P + L + GLM IP A +
Sbjct: 121 LNVLIQINISDEESKSGIKPADMMALAEIIENLPHLRLRGLMAIPAATHDVAIQAQSFSA 180
Query: 172 PH--FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
H F L + ++ LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 MHKLFVELQQSLPNQRIDTLSMGMTDDMTAAIKCGSTMVRIGTAIFGSR 229
>gi|225018389|ref|ZP_03707581.1| hypothetical protein CLOSTMETH_02336 [Clostridium methylpentosum
DSM 5476]
gi|224948807|gb|EEG30016.1| hypothetical protein CLOSTMETH_02336 [Clostridium methylpentosum
DSM 5476]
Length = 236
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 14/227 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ + + +Q++ +A A R + L+AV+K V + + VA+ CG + EN+ QE
Sbjct: 13 SIRENVALVQQRVVRAAERAGRSPADIRLMAVTKTVAPEYVNVAVECGVNLLGENRAQEL 72
Query: 61 -AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K L E + FIG LQ NKV I+ +IE+V A + + +
Sbjct: 73 LEKHSVYTLGPEC---IHFIGHLQRNKVKSIIDKVSMIESVDSVSLAEEIDRQASRIGVV 129
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+PV ++VN G + KSG P ++ + + + V+GLM IPP N + +F + +
Sbjct: 130 MPVLLEVNIGLQPTKSGFAPEALEEGLRAVSRLKNIAVKGLMAIPPK-DNTQEYFQKMQQ 188
Query: 180 IARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + + LSMGM+ D+ELAIA GA VR+GS +FG+R
Sbjct: 189 LSVDIAGKNIDNSTMEYLSMGMSADYELAIACGANIVRVGSALFGQR 235
>gi|296104615|ref|YP_003614761.1| alanine racemase family protein [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295059074|gb|ADF63812.1| alanine racemase family protein [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 233
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 113/227 (49%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 NIAHNLAQVRDKISAAATRCGRASEEITLLAVSKTKPASAIAEAIDAGQRAFGENYVQEG 62
Query: 62 --KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ + +Q FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRYFQEQGNTGLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEMPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI ++ +L + GLM IP + + F + +
Sbjct: 123 LNVLIQINISDENSKSGIALSELDALAAEVAALPRLTLRGLMAIPAPESSYERQFAVAQQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A R K+ LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFEALKARYEKIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|261868167|ref|YP_003256089.1| succinyl-diaminopimelate desuccinylase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261413499|gb|ACX82870.1| succinyl-diaminopimelate desuccinylase [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 231
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 108/225 (48%), Gaps = 13/225 (5%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
LQ+ +QKI + +V+L+AVSK + I A GQ F EN +QE +K
Sbjct: 7 NLQLVQQKITQICQMVGSSPSAVTLLAVSKTKPVEDILTAYEAGQEAFGENYVQEGVEK- 65
Query: 66 IPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
I ++ ++ L FIG LQSNK + FD ++T+ R K A L+ + L V
Sbjct: 66 IQFCQQHNINLEWHFIGPLQSNKTRLVAEYFDWMQTLDRAKIADRLNEQRSPHKAPLNVL 125
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---------- 173
IQVN E KSGI P + D L + GLM IP +
Sbjct: 126 IQVNISNEASKSGIQPCEILDLAKHLENLPHLCLRGLMAIPEPTNDVTRQEQVFYQMRVL 185
Query: 174 FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L + ++ LSMGMT D ++AI G+T VR+G+ IFG+R
Sbjct: 186 FEQLQQALPNAQIDTLSMGMTDDMQMAIKCGSTMVRVGTAIFGKR 230
>gi|254508623|ref|ZP_05120739.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
16]
gi|219548474|gb|EED25483.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
16]
Length = 237
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 109/230 (47%), Gaps = 13/230 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ RP++SV L+AVSK I A GQV F EN +QE
Sbjct: 3 SIQQNIEQITSQIESAQQKCGRPRESVQLLAVSKTKPVDAILEAAHAGQVAFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + E ++ FIG +QSNK + F + TV R K A L+ +
Sbjct: 63 ADKVAYFNEHHPELALEWHFIGPIQSNKSRHVAENFAWVHTVDRAKIAQRLNDQRPAGMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V +QVNT E KSG+ N+ L L + GLM IP + +
Sbjct: 123 PLQVLMQVNTSGEASKSGLNENEIFALAELISSLPNLTLRGLMSIPANVSDYASQLSAFK 182
Query: 179 EIAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A + +L LSMGM+ D E AI +G+T VRIG+ IFG R
Sbjct: 183 QLAELKDALVKRFPDEQLDTLSMGMSGDMEAAIEAGSTMVRIGTAIFGAR 232
>gi|317129286|ref|YP_004095568.1| alanine racemase domain protein [Bacillus cellulosilyticus DSM
2522]
gi|315474234|gb|ADU30837.1| alanine racemase domain protein [Bacillus cellulosilyticus DSM
2522]
Length = 227
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L Q ++++ R + V+++AV+K V ++ + AL+ G EN+++E
Sbjct: 1 MSVQENLNRIHQVVKDACKKENRDYNCVNIIAVTKYVSIERAKDALASGIQHIGENRVEE 60
Query: 61 AKKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
A KKW L + W FIGSLQS KV +++ FD I ++ R A + + +
Sbjct: 61 ALKKWEVLGEKGTW----HFIGSLQSKKVKKMIHQFDYIHSLDRLSLAKEID-KRTPEGE 115
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+ ++QVN E KSGI P +T F+ + + V GLM + P + N +P+F
Sbjct: 116 TMKCFVQVNVSGEETKSGIKPEETISFIHDLSKYKAIEVVGLMTMAPIVENAEEVRPYFR 175
Query: 176 LLSEIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFG 216
L E+ + + K LSMGM+ DF +A+ GAT +RIG+ + G
Sbjct: 176 QLRELKEKIEKLKLSHAPCHELSMGMSNDFAIAVEEGATFIRIGTALVG 224
>gi|145639591|ref|ZP_01795195.1| hypothetical protein CGSHiII_10128 [Haemophilus influenzae PittII]
gi|145271382|gb|EDK11295.1| hypothetical protein CGSHiII_10128 [Haemophilus influenzae PittII]
gi|309750493|gb|ADO80477.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
Length = 237
Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 111/233 (47%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQGVNLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V IQ+N E KSGI P + L + GLM IP N F
Sbjct: 121 LNVLIQINISDEESKSGIQPGEMLTLAKHIENLPHLCLRGLMAIPAPTDNIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|317056650|ref|YP_004105117.1| alanine racemase domain-containing protein [Ruminococcus albus 7]
gi|315448919|gb|ADU22483.1| alanine racemase domain protein [Ruminococcus albus 7]
Length = 244
Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 111/213 (52%), Gaps = 11/213 (5%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD 73
+EN+ + D + ++AV+K V +KI A+ G + EN++QE K K
Sbjct: 30 VENAKAKYRSNDDKIDIMAVTKTVAPEKINFAIDQGITLLGENRVQEFLSKKDSYNKS-- 87
Query: 74 VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ 133
Q+ IG LQ+NKV I++ +I++V K A ++ +K R + V +++N G E+
Sbjct: 88 AQVHMIGRLQTNKVKYIINEVSMIQSVDSLKLAKEINRLAVKNDRIMDVLLEINIGDEVS 147
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK-------- 185
KSG+ + + + Q + ++GLM IPP +G + F + I K
Sbjct: 148 KSGVAADGLDELIYETAQLSNVRIKGLMAIPP-VGCGEDMFERMHSIFLRVKENAVPNVS 206
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ D+ELAI G+ VRIG+ +FG R
Sbjct: 207 MEILSMGMSGDYELAIKHGSNLVRIGTALFGAR 239
>gi|262403913|ref|ZP_06080470.1| hypothetical protein VOA_001901 [Vibrio sp. RC586]
gi|262349875|gb|EEY99011.1| hypothetical protein VOA_001901 [Vibrio sp. RC586]
Length = 236
Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 112/228 (49%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + +V L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSAVQLLAVSKTKPIEAILEATQAGQRCFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + ++ FIG LQSNK + FD + T+ REK A L+ +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIEREKIALRLNEQRPAGMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L L + GLM IP P F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISGLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQKLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGER 230
>gi|222109633|ref|YP_002551897.1| alanine racemase domain-containing protein [Acidovorax ebreus TPSY]
gi|221729077|gb|ACM31897.1| alanine racemase domain protein [Acidovorax ebreus TPSY]
Length = 238
Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 112/237 (47%), Gaps = 25/237 (10%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + LQ +++I + A RP D+V+L+AVSK + +R A GQ F EN +QEA
Sbjct: 3 TIASNLQNVRERIARACAAAGRPPDAVALLAVSKTFGPEAVRDAALAGQRRFGENYIQEA 62
Query: 62 KKKW-------IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
+K +P EW IG +QSNK + FD + TV R KTA LS +
Sbjct: 63 VEKMALVAALGLPQALEWHC----IGPVQSNKTRLVAQHFDWVHTVDRPKTAQRLSDQRP 118
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
L V IQVN K+G+ + +L + G+M IP +
Sbjct: 119 DNLPALQVCIQVNVDGGATKAGVPAEEALALAQAVAALPRLTLRGVMSIPDPAPDEAAQL 178
Query: 175 YLLSEIAREC-------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+L + R+ + LS+GMT D E A+ +G+T VR+GSGIFG R
Sbjct: 179 AVLLRV-RQVFDTLRAQGGPGFEAVDTLSLGMTGDLEAAVRAGSTMVRVGSGIFGAR 234
>gi|253690200|ref|YP_003019390.1| alanine racemase domain protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756778|gb|ACT14854.1| alanine racemase domain protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 280
Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 108/232 (46%), Gaps = 27/232 (11%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +IE + R +V L+ VSK ++R+A G + ENK+QEA +KW
Sbjct: 30 LAAVQARIEAACRRVDRDPATVRLLPVSKTKPESRLRMAHMAGCRVLGENKVQEAYRKWE 89
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
++ D+Q IG LQ+NK + + + + A L + + R L V++QV
Sbjct: 90 SMQDLADLQWSVIGHLQTNKAKLVARFATEFQALDSLRLAEALDRRLQVEGRSLDVFVQV 149
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC-- 184
NT E K G+ P+ F+ L V GLM + A+ F +E R+C
Sbjct: 150 NTSGEASKYGLSPDDVPAFIQALPTFSALRVRGLMTL--AL------FSSEAERVRQCFV 201
Query: 185 -----------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 202 RLRQLRERLQQNLPTGIDLDELSMGMSGDFEIAIEEGATVVRVGQAIFGARP 253
>gi|187476708|ref|YP_784731.1| hypothetical protein BAV0193 [Bordetella avium 197N]
gi|115421294|emb|CAJ47799.1| conserved hypothetical protein [Bordetella avium 197N]
Length = 232
Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 114/229 (49%), Gaps = 16/229 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ +L + +I + A RP SV+L+ VSK ++ +R A + G F ENK QE
Sbjct: 4 SMSARLAAIEHRIAQACERAARPAGSVTLLPVSKTFSAEAVREAAALGLRRFGENKTQEI 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K PL + + IG LQ+NKV ++ ++++ R + A L + R L
Sbjct: 64 RQKADPL-ADLGLSWVMIGHLQTNKVKDVARDVAEVQSLDRLELADALQRRLETAGRELD 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGNPKPH------F 174
V IQV T E K G+ P + RQ L V+GLM + N + H F
Sbjct: 123 VLIQVKTSPEPSKFGLPPETLPAMLTHLRQACPALRVQGLMTMAI---NSEDHAAVRACF 179
Query: 175 YLLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E+ + L +LSMGM+ DFE+AI G+T VRIGS +FG R
Sbjct: 180 RRLRELRDQHASSAVPLARLSMGMSGDFEIAIEEGSTEVRIGSALFGAR 228
>gi|319649649|ref|ZP_08003805.1| hypothetical protein HMPREF1013_00409 [Bacillus sp. 2_A_57_CT2]
gi|317398811|gb|EFV79493.1| hypothetical protein HMPREF1013_00409 [Bacillus sp. 2_A_57_CT2]
Length = 228
Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 20/231 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ + I+ + I A R + ++L+AV+K V +++ + AL G V EN+ +
Sbjct: 1 MRVEDNLKQIESAIKEACIKANRKPEEITLIAVTKYVSAERAQEALEAGIVHLGENRDEG 60
Query: 61 AKKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
KW L+ + W FIG+LQ+ KV I+ D I ++ R A + + R
Sbjct: 61 LLAKWDVLKDKPTW----HFIGTLQTRKVKNIIDKVDYIHSLDRLSLAKEIDK---RADR 113
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+ ++QVN E K GI P + DF+ LNV GLM + P N + F
Sbjct: 114 KINCFVQVNVSGEESKQGINPEEVADFISCLADYKNLNVIGLMTMAPLSDNEELLRSCFR 173
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + + K T+LSMGM+ DF LAI GAT VRIG+ + G++
Sbjct: 174 KLKNLQTKVKDLGFDFAPCTELSMGMSNDFSLAIEEGATMVRIGTALVGQK 224
>gi|119475410|ref|ZP_01615763.1| hypothetical protein GP2143_16361 [marine gamma proteobacterium
HTCC2143]
gi|119451613|gb|EAW32846.1| hypothetical protein GP2143_16361 [marine gamma proteobacterium
HTCC2143]
Length = 230
Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 107/216 (49%), Gaps = 9/216 (4%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+ +I N+ R ++V+L+AVSK + ++R A++ G EN LQEA K + L
Sbjct: 16 RDRIRNAEEKYHRKPNTVALMAVSKTRSADEVRQAIAAGITDIGENYLQEALDKQLHL-T 74
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
+ DV FIG +QSNK I FD + +V R K A L+ + L V +QVNT
Sbjct: 75 DIDVYWHFIGPIQSNKTRAIAEHFDWVHSVDRLKIALRLNDQRPSGMPPLNVCLQVNTSD 134
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH-------FYLLSEIARE 183
E K+G+ Q + + GLM IP A + +++ +
Sbjct: 135 ENSKAGVSLEQLASLAEQVDSLPHIQLRGLMSIPQASDQADEQQAAFAVLHHAFNKLQKT 194
Query: 184 CK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
C L LSMGM+ D E AIA G+T VRIG+ IFG R
Sbjct: 195 CNDLDTLSMGMSADMEAAIAEGSTVVRIGTDIFGPR 230
>gi|310642975|ref|YP_003947733.1| alanine racemase domain protein [Paenibacillus polymyxa SC2]
gi|309247925|gb|ADO57492.1| Alanine racemase domain protein [Paenibacillus polymyxa SC2]
Length = 233
Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 17/229 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL +++ +IE + + R +D V+++AV+K V + + L EN+ Q+
Sbjct: 1 MSLEERIKEVNARIEAACARSGRSRDEVNVIAVTKYVSAAAMASVLDNDLEHVGENRWQD 60
Query: 61 AKKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
A KW L R W FIG LQ+NKV +++ F I ++ R A L +
Sbjct: 61 AADKWSKLGDRGTW----HFIGHLQTNKVKDVIGKFKFIHSLDRLSLAQELDKKAAALGL 116
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+ ++QVN EI K G+ P F+ R+ ++V GLM + P +P +P F
Sbjct: 117 RVKAFVQVNISGEISKYGLSPETVAPFLEQIRELEHVDVIGLMTMAPHEEDPEHTRPVFR 176
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L E+ + LSMGM+ DFE+A+ GAT +R+GS + G
Sbjct: 177 GLRELRDRLNGQALTREPIVHLSMGMSNDFEVAVEEGATWLRLGSVLVG 225
>gi|167854570|ref|ZP_02477351.1| hypothetical protein HPS_02299 [Haemophilus parasuis 29755]
gi|167854325|gb|EDS25558.1| hypothetical protein HPS_02299 [Haemophilus parasuis 29755]
Length = 227
Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 111/226 (49%), Gaps = 8/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L + Q+I+ A RP+ SV L+AVSK I A+ GQ F EN +QE
Sbjct: 1 MSISQNLAIISQQIQQYCQQANRPEQSVKLLAVSKTKPISAIAEAIEAGQRAFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + ++ FIG LQSNK + FD ++T+ R K A LS + K L
Sbjct: 61 GIEKIQYFAENDTLEWHFIGLLQSNKTRVVAEHFDWVQTIDRLKIAQRLSEQRPKHLPVL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQ+N E KSGI + + Q +L + GLM IP P+ L+++
Sbjct: 121 NVLIQINISDEASKSGISAKEMLELATQISQLPRLKLRGLMAIPKPESEPEQQKIALAQM 180
Query: 181 --------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + LSMGM+ D AI G+T VRIG+ IFG R
Sbjct: 181 NELFLQLQSQFEGIDTLSMGMSDDMPSAIECGSTMVRIGTAIFGAR 226
>gi|229847062|ref|ZP_04467168.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
7P49H1]
gi|229810146|gb|EEP45866.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
7P49H1]
Length = 233
Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 118/232 (50%), Gaps = 17/232 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + AKR +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIEMACEEAKRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN---VEGLMCIPPA---MGNPKPH 173
L V IQ+N E KSGI P ++ +IL + L + GLM IP + +
Sbjct: 121 LNVLIQINISDEESKSGIQP---EEMLILAKHIENLPHLCLRGLMAIPAPTDKIAEQEAV 177
Query: 174 FYLLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F +S++ + K + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 178 FRKMSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKYGSTMVRIGTAIFGAR 229
>gi|300309842|ref|YP_003773934.1| enzyme with a TIM-barrel fold protein [Herbaspirillum seropedicae
SmR1]
gi|300072627|gb|ADJ62026.1| enzyme with a TIM-barrel fold protein [Herbaspirillum seropedicae
SmR1]
Length = 270
Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 105/224 (46%), Gaps = 11/224 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L ++I + A RP SV L+ VSK IR+A + G + ENK QEA KW
Sbjct: 34 NLAAVHRRIAAACERAGRPASSVRLLPVSKTKPESSIRLAYAAGCCLLGENKPQEACHKW 93
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ +Q IG LQ+NK + + + + A L + ++ R L V++Q
Sbjct: 94 EATQDLSGLQWSVIGHLQTNKAKLVARFAAEFQALDSLRVAQALERRLQQEGRGLDVFVQ 153
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHF-------- 174
VNT E K G+ P + F+ L + GLM + P +P F
Sbjct: 154 VNTSGEASKYGLAPEEVAPFLRQLHAYPALRLRGLMTLAVFSPDPARVRPCFSLLRNLRE 213
Query: 175 YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L ++ +L +LSMGM+ D+E+AI GAT VR+G +FG R
Sbjct: 214 RLRQDVPAGAQLDELSMGMSGDYEIAIEEGATVVRVGQALFGAR 257
>gi|121608653|ref|YP_996460.1| alanine racemase domain-containing protein [Verminephrobacter
eiseniae EF01-2]
gi|121553293|gb|ABM57442.1| alanine racemase domain protein [Verminephrobacter eiseniae EF01-2]
Length = 239
Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 111/237 (46%), Gaps = 23/237 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ ++ + + A R SV L+AV+K ++ + A++ GQ F EN +QE
Sbjct: 3 TIATNLQQVADRMTRACMAAGRAPASVGLLAVAKTFNADAVAQAVAAGQRAFGENYIQEG 62
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + LR + +Q IG +QSNK + FD + +V R K A LS +
Sbjct: 63 VDKILALRAALPDAALQWHCIGPVQSNKTRLVAEHFDWVHSVDRLKIAQRLSAQRPAHLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L + IQVN KSG+ Q + Q +L + GLM IP +P P F
Sbjct: 123 PLQLCIQVNLDGGATKSGVTAGQLPGLLRAIAQLPRLRLRGLMSIP----DPAPDFQAQK 178
Query: 179 EIARECK----------------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
I K LS+GMT D E AI +G+T VR+GSGIFG+RP
Sbjct: 179 AIHASVKRLFDQICASAVPGLEDFDTLSLGMTADLEAAIWAGSTLVRVGSGIFGDRP 235
>gi|241766135|ref|ZP_04764043.1| alanine racemase domain protein [Acidovorax delafieldii 2AN]
gi|241363818|gb|EER59153.1| alanine racemase domain protein [Acidovorax delafieldii 2AN]
Length = 239
Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 110/236 (46%), Gaps = 23/236 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N LQ + +I + A R DSVSL+AVSK + + A++ GQ F EN +QE
Sbjct: 3 TIANNLQQVQARIAQACAAAGRDPDSVSLLAVSKTFGADAVLEAVAAGQRAFGENYIQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K +Q IG +QSNK + FD TV R K A LS +
Sbjct: 63 VDKIAAVRAALPAAALQWHCIGPIQSNKTRLVAEHFDWAHTVDRLKIAERLSAQRPAHLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L + IQVN K+G+ P + D V + +L V GLM IP +P P
Sbjct: 123 ALQLCIQVNVDAGPTKAGVPPAEVLDLVCAVAKLPRLQVRGLMSIP----DPAPSHEAQR 178
Query: 176 LLSEIAREC-------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ E AR K LSMGMT D + AI +G+T VR+G+GIFG R
Sbjct: 179 AVHESARRLFEQIRQTGAPGLEKFDTLSMGMTADLDAAIQAGSTMVRVGTGIFGGR 234
>gi|324521624|gb|ADY47891.1| Proline synthase co-transcribed bacterial protein [Ascaris suum]
Length = 277
Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 108/205 (52%), Gaps = 16/205 (7%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVS 88
LVAVSK ++ GQ F EN +QE ++K L + ++ FIG +QSNK++
Sbjct: 69 LVAVSKTKHPDLVKRCYDEGQRKFGENYVQELQEKAAALANDCPHIEWHFIGQIQSNKIA 128
Query: 89 EIVSL--FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
++ ++ +ET+S EK ++L EM K+ R + VY+Q NT E QK G P +
Sbjct: 129 KLAAIQNLHCVETLSSEKHCTMLDKEMAKRGRRINVYVQTNTSNEPQKGGATPESALNVA 188
Query: 147 ILCRQKY-QLNVEGLMCI----PPAMGNPKPHFYLLSEIARE-CKLT-------KLSMGM 193
R++ L G M I + P F +L ++ ++ C+ T LSMGM
Sbjct: 189 QFIREQCPSLRFAGFMTIGSFEQSSSQQPNADFDVLFDVRKKFCERTGVSEGDYDLSMGM 248
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ DFE A+ G+TSVR+G+ IFG R
Sbjct: 249 SHDFETAVLQGSTSVRVGTTIFGSR 273
>gi|296133623|ref|YP_003640870.1| alanine racemase domain protein [Thermincola sp. JR]
gi|296032201|gb|ADG82969.1| alanine racemase domain protein [Thermincola potens JR]
Length = 230
Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 115/227 (50%), Gaps = 14/227 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ ++ I +A + R + + L+AVSK V + I+ A G F EN++QE
Sbjct: 5 LRTNLEQIRRNINEAAYKSGRKPEDIKLIAVSKTVPMETIKAAWEMGVTDFGENRVQELT 64
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ L + + IG LQ NKV IV +I ++ A ++ + + + L V
Sbjct: 65 EKFNELP---EAKWHLIGHLQKNKVKYIVDKVVLIHSLDSYPLAEEINKRAVARGKCLDV 121
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
IQVN E K G+ ++ DF+ + L V+GLM I P +G+P+ + E+ +
Sbjct: 122 LIQVNVAREPTKFGLDLSEVDDFINAVKDLPGLAVKGLMTIAPFVGDPEAVRPVFRELKK 181
Query: 183 E-----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ LSMGM+ D+ +AI GA VRIG+ IFGER
Sbjct: 182 KFDALKTMEIPSAEMKYLSMGMSNDYRIAIEEGANLVRIGTRIFGER 228
>gi|222529335|ref|YP_002573217.1| alanine racemase domain-containing protein [Caldicellulosiruptor
bescii DSM 6725]
gi|222456182|gb|ACM60444.1| alanine racemase domain protein [Caldicellulosiruptor bescii DSM
6725]
Length = 233
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 115/230 (50%), Gaps = 16/230 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L ++ ++IE + + A R D VSL+ +K VD + I++A G IF EN++QE
Sbjct: 6 TLKKNIEDVMERIEMACLRAGRKPDEVSLLGATKGVDVETIKLANQFGLRIFGENRVQEF 65
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L EW FIG LQ+NK+ I +I +V + L K +
Sbjct: 66 LPKFQELPYLEW----HFIGRLQTNKIKYIYDKVSLIHSVDSPQQIDELEKRCAKAGKAC 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V I++N G E K G+ + D + + ++G M IPP + + +F +
Sbjct: 122 NVLIEINIGGEESKGGVSIEKVDDLIEKISNCSHVILKGFMTIPPIEDDEMKLRVYFRKM 181
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
EI + K + LSMGM+ DFE+AI GAT VRIG+ IFGERP
Sbjct: 182 KEIFEKYKKLNYNNVNIEVLSMGMSGDFEVAIEEGATLVRIGTKIFGERP 231
>gi|260773602|ref|ZP_05882518.1| hypothetical protein VIB_002076 [Vibrio metschnikovii CIP 69.14]
gi|260612741|gb|EEX37944.1| hypothetical protein VIB_002076 [Vibrio metschnikovii CIP 69.14]
Length = 238
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 99/211 (46%), Gaps = 11/211 (5%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK---WIPLRKEWDVQLRFI 79
R SV L+AVSK + I A GQ+ F EN +QE K + + D++ FI
Sbjct: 24 RSPSSVQLLAVSKTKPVEAILEAALAGQLAFGENYVQEGVNKIRYFAEHHPQLDLEWHFI 83
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G LQSNK I FD + T+ R K A LS + L V IQVNT E KSGI
Sbjct: 84 GPLQSNKTRLIAEHFDWMHTLDRAKIAQRLSEQRPAHKAPLQVLIQVNTSGETSKSGISE 143
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA--------RECKLTKLSM 191
L + L + GLM IP + + +A R L LSM
Sbjct: 144 QALFPLAELISELPNLTLRGLMSIPENVADYAEQLVAFQRLADLQARLTERYPALDTLSM 203
Query: 192 GMTRDFELAIASGATSVRIGSGIFGERPCQT 222
GM+ D + AI +G+T VRIG+ IFG+R T
Sbjct: 204 GMSGDMQAAIEAGSTMVRIGTAIFGQRDYPT 234
>gi|291533842|emb|CBL06955.1| pyridoxal phosphate enzyme, YggS family [Megamonas hypermegale
ART12/1]
Length = 229
Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 118/226 (52%), Gaps = 18/226 (7%)
Query: 7 LQVFKQKIENSAILAKRPK---DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L+ ++ I+ S +AKR + V LVAV+K D ++ A+ G + EN++QEA +
Sbjct: 6 LKTVQEHIKES--IAKRHNAASEDVLLVAVTKNHDVTSMQEAIDAGANVIGENRVQEALQ 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K L + DV IG LQ+NK V LFD+IE+V K A L+ E K + V
Sbjct: 64 KHETLNR--DVTWHLIGHLQTNKAKYAVKLFDMIESVDSIKLAEALNKEAQKIDKVQQVL 121
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEI 180
+QVN E K+G+ + + + L + GLM I P + N +P F + ++
Sbjct: 122 VQVNLVKEASKTGVYLEELGELLAKIDILSNLKLMGLMFIAPKVDNLEDVRPMFAQMFKL 181
Query: 181 ARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + + LSMGMT D+++AI GA VR+G+GIFG R
Sbjct: 182 FKKVQAKTFATSEIKYLSMGMTHDYQIAIEEGANIVRVGTGIFGPR 227
>gi|224826749|ref|ZP_03699849.1| alanine racemase domain protein [Lutiella nitroferrum 2002]
gi|224600969|gb|EEG07152.1| alanine racemase domain protein [Lutiella nitroferrum 2002]
Length = 231
Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 110/225 (48%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L +Q++ + A R SV L+AVSK + I+ A + GQ F EN +QE
Sbjct: 4 AISSSLAAVRQRLAAAEAAAGRASGSVCLLAVSKTFPADAIQEAYAAGQRAFGENYVQEL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L D++ FIG LQSNK + L + +V R K A LS + L
Sbjct: 64 QAKGGVL-GGLDIEWHFIGPLQSNKTRPVAELAHWVHSVERLKIAERLSSQRPASLPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V +QVN E KSG P++ +L + GLMCIP + F LL
Sbjct: 123 VCLQVNVSGEGSKSGCEPHEVLALARAVAALPRLTLRGLMCIPEPTADQARLAGQFALLR 182
Query: 179 EI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ A+ L LSMGM+ D ELA+ G+T VR+G+ IFG R
Sbjct: 183 RLRDEMAAQGLALDTLSMGMSADLELAVREGSTLVRVGTAIFGSR 227
>gi|319896535|ref|YP_004134728.1| hypothetical protein HIBPF01320 [Haemophilus influenzae F3031]
gi|317432037|emb|CBY80385.1| conserved hypothetical protein [Haemophilus influenzae F3031]
Length = 233
Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 113/229 (49%), Gaps = 11/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK +I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISEILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEYFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPH--FYL 176
L V IQ+N E KSGI P + L + GLM IP P P+ F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIPEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGAR 229
>gi|284799539|ref|ZP_05984247.2| pyridoxal phosphate enzyme, YggS family [Neisseria subflava NJ9703]
gi|284798165|gb|EFC53512.1| pyridoxal phosphate enzyme, YggS family [Neisseria subflava NJ9703]
Length = 239
Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 107/213 (50%), Gaps = 8/213 (3%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD 73
+E +A A R D+V LVAVSK + IR + GQ F EN +QE +K L D
Sbjct: 23 VEQAAEAAGRSADAVKLVAVSKTFPADDIREVYAAGQRDFGENYIQEWFEKTETLADLPD 82
Query: 74 VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ 133
+ IG +QSNK + + T+ R KTA LS + + L V I+VN E
Sbjct: 83 IVWHVIGDVQSNKTKFVAERAHWVHTIGRLKTARRLSEQRPSEMPPLQVCIEVNIAAEEA 142
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY----LLSEI-ARECK 185
K G+ P + + + + V GLMC+ A + + F+ LL+E+ A +
Sbjct: 143 KHGVAPTEAVALALEVAKLPNIKVRGLMCVAKADSSDDELRSQFHTMQRLLAELNAAGVE 202
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D +A+ GAT VRIGS IFG+R
Sbjct: 203 ADVLSMGMSGDMPIAVECGATHVRIGSAIFGKR 235
>gi|167630158|ref|YP_001680657.1| hypothetical protein HM1_2089 [Heliobacterium modesticaldum Ice1]
gi|167592898|gb|ABZ84646.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
Length = 229
Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 117/228 (51%), Gaps = 13/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L L +Q+I ++A+ A R +++ L+AV+K V ++I+ + G + EN++QE
Sbjct: 3 HLQENLGRVRQRIRDAAMRAGREPEAIRLLAVTKTVPVEQIQEVVDAGVDLLGENRVQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K +R V+ IG+LQ+NKV I D+I ++ R A ++ + R +
Sbjct: 63 LAKHRQVRGS--VRWHMIGTLQTNKVKYIYDKVDLIHSLDRLSLAQAINRYAARLGRPID 120
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
++VN E K G+ F+ +++ GLM + P + +P +P F L
Sbjct: 121 CLVEVNVAGEKSKHGVDRRDLISFIRDVTAFEGIHIRGLMTMAPYVDDPEETRPFFRDLY 180
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++RE ++ LSMGM+ DFE+A+ GAT VRIGS +FG R
Sbjct: 181 HLSREVDELGLQRVEMRHLSMGMSNDFEVAVEEGATIVRIGSSLFGGR 228
>gi|302546154|ref|ZP_07298496.1| YggS family pyridoxal phosphate enzyme [Streptomyces hygroscopicus
ATCC 53653]
gi|302463772|gb|EFL26865.1| YggS family pyridoxal phosphate enzyme [Streptomyces himastatinicus
ATCC 53653]
Length = 239
Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 115/235 (48%), Gaps = 24/235 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R ++ V+L+ V+K + +R+ G AEN+ QEA
Sbjct: 8 LAANLATVEERISAACAAAGRKREEVTLIVVTKTYPASDVRLLAELGVRHVAENRDQEAA 67
Query: 63 KKW-----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K +PL W F+G LQ+NKV + S DV+++V R++ LS + +
Sbjct: 68 PKAAECADLPL--IW----HFVGQLQTNKVRSVCSYADVVQSVDRKRLVDALSGAAVGAA 121
Query: 118 RFLPVYIQ----VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG----N 169
R L V IQ V++G Q+ G+ P+ L ++GLM + P G
Sbjct: 122 RELGVLIQVALDVDSGERGQRGGVGPDGVGALAEAVAAADGLRLDGLMTVAPLAGPYADQ 181
Query: 170 PKPHFYLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P+ F L EI+ ++ +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 182 PRAAFGRLMEISSGLRVAHPAANMVSAGMSSDLEEAVAAGATHVRVGTAVLGVRP 236
>gi|169831572|ref|YP_001717554.1| alanine racemase domain-containing protein [Candidatus Desulforudis
audaxviator MP104C]
gi|169638416|gb|ACA59922.1| alanine racemase domain protein [Candidatus Desulforudis
audaxviator MP104C]
Length = 234
Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 108/210 (51%), Gaps = 18/210 (8%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV---QLRFI 79
R ++V LVAVSK + ++IR A+ G IF E+++QE +RK DV + FI
Sbjct: 26 RDPETVGLVAVSKSIGPEQIRKAMEAGVQIFGESRVQEL------VRKHPDVPGPRWHFI 79
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G LQ NKV +V ++I ++ R A L +Q + V +QV G E K G+
Sbjct: 80 GHLQRNKVKYLVGRVELIHSLDRWSLAEELDRRAREQGQPFRVLVQVKVGAEEGKFGVEA 139
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF----YLLSEIARECKLTK--LS 190
+ DFV L VEGLM + P +P +P+F L +A + LS
Sbjct: 140 VKVGDFVNRVAGLRGLRVEGLMAMAPFCDDPEQARPYFREVKRLFDGLAGVPGFERRYLS 199
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERPC 220
MGM+ D+E+A+ GA VR+G+ IFG R C
Sbjct: 200 MGMSSDYEVAVEEGANLVRVGTAIFGPRKC 229
>gi|255590737|ref|XP_002535350.1| proline synthetase associated protein, putative [Ricinus communis]
gi|223523376|gb|EEF27030.1| proline synthetase associated protein, putative [Ricinus communis]
Length = 238
Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 111/227 (48%), Gaps = 14/227 (6%)
Query: 2 SLGNKLQVFKQKIENSA--ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
+L + L +Q+I ++ A +P V+L AVSK + IR A GQ +F EN LQ
Sbjct: 3 ALSDNLACIRQQITDAQARFQAMQP---VTLCAVSKAQPATAIRAAYDAGQTVFGENYLQ 59
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA +K L + + FIG +QSNK I FD + +V R K A LS
Sbjct: 60 EALQKQAEL-DDCAIAWHFIGPIQSNKTQPIARHFDWVHSVDRLKIAQRLSNARPSDLPP 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
L + +QVN E KSG + + + +Q L + GLM IP + + F
Sbjct: 119 LNICLQVNISEEASKSGASGQELLELALNIKQLPHLQLRGLMAIPAPCSDFEQQRDQFRQ 178
Query: 177 LSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + +L LS+GM+ DF AIA GAT VRIG+ IFG R
Sbjct: 179 VRALFEQLNSHGLQLDTLSIGMSGDFAAAIAEGATLVRIGTAIFGAR 225
>gi|119775610|ref|YP_928350.1| hypothetical protein Sama_2477 [Shewanella amazonensis SB2B]
gi|119768110|gb|ABM00681.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
Length = 235
Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 117/229 (51%), Gaps = 12/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +Q+I +A ++ R + L+AVSK + I+ A GQ +F EN +QE
Sbjct: 3 TIADRLSLAQQRIVQAAQISSRNPSEIKLLAVSKTKPASDIQAAYDAGQRLFGENYVQEG 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L +++ FIG LQSNK + FD + T+ REK A L+ + + L
Sbjct: 63 VQKITDLTSPCPNIEWHFIGPLQSNKSRPVAEHFDWLHTLDREKLAIRLNEQRPAELAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQVN E KSG+ P + +L + GLM IP + + L+ +
Sbjct: 123 NVLIQVNISDEESKSGVKPEDITALADAVCRLPRLRLRGLMAIPAPTDDKERAQTELANM 182
Query: 181 ARECK-----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R K + LSMGM+ D ELAI +G+T VR+GS IFGER
Sbjct: 183 QRLFKSLQQSHGTLGQIDTLSMGMSGDLELAIDNGSTLVRVGSAIFGER 231
>gi|51892365|ref|YP_075056.1| hypothetical protein STH1227 [Symbiobacterium thermophilum IAM
14863]
gi|51856054|dbj|BAD40212.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 230
Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 112/207 (54%), Gaps = 20/207 (9%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V LVAV+K ++I L+ G EN++QE + K P ++ IG+LQ+NK
Sbjct: 28 GVRLVAVTKTRTVEEIEAVLAAGIRDLGENRVQELRSK-APFLQDRQPTWHLIGTLQTNK 86
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQS--RFLPV--YIQVNTGYEIQKSGIMPNQT 142
V + + ++I ++ R ++LLS E++KQ+ R PV +QVN E K G+ P
Sbjct: 87 VKQALEWAELIHSLDR---SALLS-ELVKQAERRGRPVDALVQVNVSGEASKHGLPPGDL 142
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK--------LTKLSM 191
+ F+ Q+ + V GLM + P NP +PHF L ++ + + L LSM
Sbjct: 143 EPFLRQVAQQRWVRVRGLMTMAPLSDNPEDARPHFRRLRQLRDQMQALGIEGVSLEHLSM 202
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D+E+A+ GAT VR+G+ IFG R
Sbjct: 203 GMSGDYEVAVEEGATLVRVGTAIFGPR 229
>gi|237654358|ref|YP_002890672.1| alanine racemase [Thauera sp. MZ1T]
gi|237625605|gb|ACR02295.1| alanine racemase domain protein [Thauera sp. MZ1T]
Length = 237
Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 103/206 (50%), Gaps = 16/206 (7%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---EWDVQLRFIG 80
P D V L+AVSK ++ +R A + GQ F EN +QE K LR EW FIG
Sbjct: 26 PAD-VKLLAVSKTWPAEAVREAAAAGQRAFGENYVQEGVDKVEALRALGLEW----HFIG 80
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
LQSNK + + FD + + R K A LS + L V IQVN E KSG+ P+
Sbjct: 81 PLQSNKTRPVANAFDWVHGIDRLKIAERLSAQRDVHLPPLDVCIQVNVSGEDSKSGVAPD 140
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-----LTKLSMG 192
+ +L + GLMCIP + + F +L + E + L LSMG
Sbjct: 141 EAGALAHAVAALPRLRLRGLMCIPEPSADEAVLRARFAVLRGLHDELRAAGLALDTLSMG 200
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D E AIA GA VR+G+ IFGER
Sbjct: 201 MSHDLEPAIAEGANIVRVGTAIFGER 226
>gi|163846505|ref|YP_001634549.1| alanine racemase domain-containing protein [Chloroflexus
aurantiacus J-10-fl]
gi|222524290|ref|YP_002568761.1| alanine racemase domain-containing protein [Chloroflexus sp.
Y-400-fl]
gi|163667794|gb|ABY34160.1| alanine racemase domain protein [Chloroflexus aurantiacus J-10-fl]
gi|222448169|gb|ACM52435.1| alanine racemase domain protein [Chloroflexus sp. Y-400-fl]
Length = 246
Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 115/242 (47%), Gaps = 29/242 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L +L + +++I +A A R D V L+AVSK + + A++ G EN++QEA
Sbjct: 4 ALRQRLAIVREQIAAAAAAAGRQADEVQLIAVSKTHPPEVVAAAVAAGVSDIGENRVQEA 63
Query: 62 KKKWIPL-----RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ K L R W IG LQ NK V LFD+I +V + A L ++
Sbjct: 64 QHKIAALHSLQPRPRW----HLIGHLQRNKAKVAVELFDLIHSVDSVRLAETLDRHARER 119
Query: 117 SRFLPVYIQVNTGYEIQKSGIMP----NQTKDFVILCR------QKYQLNVEGLMCIPPA 166
R LP+ +QVN E K G + T + R Q L + GLM I P
Sbjct: 120 DRRLPILLQVNVSGEASKEGFVVVDGIKNTTAYSAFLRDVEAILQLPALEIRGLMTIAPI 179
Query: 167 MGNP---KPHFYLLSEIARE-------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ +P +P+F L E+ + +LSMGM+ D AIA GAT VRIG IFG
Sbjct: 180 VEHPDLARPYFATLRELRDDLVRRYPQTNWRELSMGMSDDLTAAIAEGATMVRIGRAIFG 239
Query: 217 ER 218
ER
Sbjct: 240 ER 241
>gi|284007793|emb|CBA73650.1| amino acid racemase [Arsenophonus nasoniae]
Length = 203
Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 75/203 (36%), Positives = 100/203 (49%), Gaps = 9/203 (4%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
P+D ++L+AVSK I+ A+ GQ F EN LQE +K R + D+ FIG+LQ
Sbjct: 2 PED-ITLLAVSKTKSCDAIQEAIDAGQYQFGENYLQEGIEKIAYFRHKQDLIWHFIGALQ 60
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
SNK + FD T+ R K A L+ + L V IQ+N EI KSGI P +
Sbjct: 61 SNKSRLVAEHFDWCHTIDRLKIAQRLNNQRPINKTPLNVLIQINISDEISKSGIAPEELD 120
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIARECK-----LTKLSMGMTR 195
L + GLM IP F + + + K + LSMGMT
Sbjct: 121 KLAAEIVLLPNLKLRGLMAIPAPNNELSQQISIFRSMENLFNQLKKQYPNIDTLSMGMTA 180
Query: 196 DFELAIASGATSVRIGSGIFGER 218
D ++AIA G+T VRIG+ IFG R
Sbjct: 181 DLDIAIAWGSTLVRIGTAIFGSR 203
>gi|330831214|ref|YP_004394166.1| alanine racemase domain-containing protein [Aeromonas veronii B565]
gi|328806350|gb|AEB51549.1| Alanine racemase domain protein [Aeromonas veronii B565]
Length = 233
Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 109/219 (49%), Gaps = 11/219 (5%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
K++I +A A R + L+AVSK + I A + GQ F E+ QEA K LR+
Sbjct: 12 KERIAQAAERASRNLQQIRLLAVSKTKPVEAIMAAHAAGQRCFGESYAQEAAAKIDTLRQ 71
Query: 71 E---WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
+ D++ FIG LQSNK + FD +++V R+K L+ + L V +Q+N
Sbjct: 72 QPEYSDIEWHFIGPLQSNKSKLVAERFDWVQSVDRDKLIDRLNNQRPTTMAPLNVCLQIN 131
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK-------PHFYLLSEI 180
E KSG + L +L + GLM IP + L +E+
Sbjct: 132 ISGESSKSGTSEQEIFRLAELVSHSERLVLRGLMAIPEHTSDESVLAAQMTRMQTLFTEL 191
Query: 181 AREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
AR+ + LSMGMT D ELAIA G+T VR+G+ IFG R
Sbjct: 192 ARQYPTVDTLSMGMTEDLELAIAHGSTMVRVGTAIFGAR 230
>gi|323669740|emb|CBJ94864.1| conserved hypothetical protein [Salmonella bongori]
Length = 237
Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 111/231 (48%), Gaps = 18/231 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAYIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLR--KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP P+ + E
Sbjct: 123 LNVLIQINISDENSKSGIPLTELDELAVAVAALPRLKLRGLMAIPA----PESDYVRQFE 178
Query: 180 IARECKLT------------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 179 VARQMAVAFGGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|153810902|ref|ZP_01963570.1| hypothetical protein RUMOBE_01286 [Ruminococcus obeum ATCC 29174]
gi|149833298|gb|EDM88380.1| hypothetical protein RUMOBE_01286 [Ruminococcus obeum ATCC 29174]
Length = 230
Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 111/223 (49%), Gaps = 13/223 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ ++ IE + R V+L++VSK ++ A G F ENK+QE K+
Sbjct: 6 LEQVRKNIEEACRAVNRDPGEVTLISVSKTKPVSMLQEAYDAGSRDFGENKVQEIMDKYP 65
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L D++ IG LQ NKV IV +I +V + A + E K + +P+ I+V
Sbjct: 66 QLPS--DIRWHMIGHLQRNKVKYIVDKVALIHSVDSLRLAETIENEAAKHNVTVPILIEV 123
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR---- 182
N E K G+ + V +N++GLM I P + +P+ + + ++ +
Sbjct: 124 NVAQEESKFGLKTEEVLSLVESVAALPHINIKGLMTIAPYVEDPEENRGIFRQLKKLSVD 183
Query: 183 -------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGMT D+++A+ GAT VR+G+GIFGER
Sbjct: 184 IAAKNINNVNMSVLSMGMTGDYQVAVQEGATMVRVGTGIFGER 226
>gi|167745614|ref|ZP_02417741.1| hypothetical protein ANACAC_00306 [Anaerostipes caccae DSM 14662]
gi|317472789|ref|ZP_07932100.1| alanine racemase domain-containing protein [Anaerostipes sp.
3_2_56FAA]
gi|167654926|gb|EDR99055.1| hypothetical protein ANACAC_00306 [Anaerostipes caccae DSM 14662]
gi|316899708|gb|EFV21711.1| alanine racemase domain-containing protein [Anaerostipes sp.
3_2_56FAA]
Length = 230
Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 120/227 (52%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++ ++ K+ ++ + A R V+++AVSK I + CG + F ENK+QE
Sbjct: 2 LIDQYKLVKENVKAACEKAGRDPKEVTVIAVSKTKPLSMIEELMDCGVMDFGENKVQEIM 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KK+ ++ V+ IG Q+NKV IV ++ +V K A +S E +K +PV
Sbjct: 62 KKYEEIKS--PVRWHMIGHFQTNKVKYIVDKVALVHSVDSVKLARQISKEALKHKIQVPV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQVN E KSG M + + + + V+GLM I P + NP + +F + +
Sbjct: 120 LIQVNLAREETKSGFMEEELFGALEEISRLPGVLVQGLMQIAPFVENPENNRVYFRRMRQ 179
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K + LSMGMT D+++A+ G+T VR+G+GIFGER
Sbjct: 180 LFVDIKEKNFDNIAMNILSMGMTNDYQVAVEEGSTMVRVGTGIFGER 226
>gi|312879667|ref|ZP_07739467.1| alanine racemase domain protein [Aminomonas paucivorans DSM 12260]
gi|310782958|gb|EFQ23356.1| alanine racemase domain protein [Aminomonas paucivorans DSM 12260]
Length = 232
Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 124/232 (53%), Gaps = 20/232 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +++I +A+ A R + L AV+K ++ + A +CG AEN++QEA
Sbjct: 3 SVRENVERVRERIARAALRAGRDPSEIRLAAVTKRHPAEAVLQAAACGVDWIAENRVQEA 62
Query: 62 --KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI---KQ 116
K++ P V +G LQ NKV + + +FD I TV ++ A +S+E + Q
Sbjct: 63 QGKRENCP---GVTVPWCLVGHLQRNKVRKALEVFDAIHTVDSQELA--VSMERVLEEGQ 117
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFV-ILCRQKYQLNVEGLMCIPPAMGNP---KP 172
+PV ++VN E KSG+ P + + + +L +EGL+ + P + +P +
Sbjct: 118 RTGVPVLLEVNVSGEAAKSGVSPEGAEALAETVVSRCSRLRLEGLLAVGPLVDDPEAIRG 177
Query: 173 HFYLLSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F LL IA + + L LSMGM+ DFE+A+ G+T VR+G+ +FG R
Sbjct: 178 AFRLLGRIAGDLRRQLGLPLATLSMGMSDDFEIAVEEGSTLVRLGTALFGPR 229
>gi|302871855|ref|YP_003840491.1| alanine racemase domain protein [Caldicellulosiruptor obsidiansis
OB47]
gi|302574714|gb|ADL42505.1| alanine racemase domain protein [Caldicellulosiruptor obsidiansis
OB47]
Length = 238
Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 111/221 (50%), Gaps = 18/221 (8%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLR 69
+IE + I + R +SL+ +K VD + I++A G IF EN++QE K +++P
Sbjct: 21 NRIEKACIRSGRNPSEISLLGATKGVDVETIKLANQFGLKIFGENRVQEFLPKFQYLPYL 80
Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
EW FIG LQ+NK+ I +I ++ + L K + V I++N G
Sbjct: 81 -EW----HFIGRLQTNKIKYIFDKVSLIHSIDSPQQIDELEKRCAKAGKACNVLIEINIG 135
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARE--- 183
E K G+ + D + + ++G M IPP + K +F + EI +
Sbjct: 136 GEESKGGVSIEKVDDLIEKISNCSHVILKGFMTIPPIEDDDKKLRWYFRRMKEIFEKYKK 195
Query: 184 -----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
K+ LSMGM+ DFE+AI GAT VRIG+ IFGERP
Sbjct: 196 LNYNSVKIEVLSMGMSNDFEVAIEEGATLVRIGTKIFGERP 236
>gi|313892936|ref|ZP_07826513.1| pyridoxal phosphate enzyme, YggS family [Veillonella sp. oral taxon
158 str. F0412]
gi|313442289|gb|EFR60704.1| pyridoxal phosphate enzyme, YggS family [Veillonella sp. oral taxon
158 str. F0412]
Length = 228
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 109/222 (49%), Gaps = 12/222 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +Q++ ++ R D+ LVAV+K + A S G EN++QEAK+K +
Sbjct: 6 LHAIQQRMADAMARVGRV-DTALLVAVTKNHPVSAVEEAASLGVTHVGENRVQEAKEKQL 64
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
K + IG LQ NKV + V +FD+I +V K + K + V +QV
Sbjct: 65 TY-KGPQLTWHLIGHLQVNKVRQAVPMFDLIHSVDSRKLLDEIEKVATKHDKVQDVLLQV 123
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE 183
N E K+G+ + + + + V GLMC+ P NP +P F + + + +
Sbjct: 124 NVAREASKTGMSVEEFPEIRDYAKTLPHVRVRGLMCMAPFFDNPEEARPIFRVANALYED 183
Query: 184 CK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K + LSMGMT DFE+A+ GA VR+G+ IFGER
Sbjct: 184 MKGYFEEGQIQYLSMGMTHDFEVALEEGANIVRVGTAIFGER 225
>gi|312883848|ref|ZP_07743565.1| TIM-barrel fold family protein [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368306|gb|EFP95841.1| TIM-barrel fold family protein [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 238
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 102/210 (48%), Gaps = 13/210 (6%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK---WIPLRKEWDVQLRF 78
R +D+V L+AVSK I A + GQ F EN +QE +K + E +++ F
Sbjct: 23 HRTQDTVQLLAVSKTKPVDAILEAANAGQRAFGENYVQEGTEKVAYFASHHPELELEWHF 82
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG +QSNK + F + +V++ K A L+ + + L V IQVNT E KSGI
Sbjct: 83 IGPIQSNKSRYVAENFHWVHSVNKAKLAQRLNDQRPEGLPPLQVLIQVNTSGETSKSGIN 142
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR----------ECKLTK 188
N+ L L + GLM IP N + E+A ++
Sbjct: 143 DNEIFSLAELISSLPNLTLRGLMSIPAQTSNYEEQLSAFGELANLQQTLKNRFSNQQIDT 202
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D + AI SG T VRIG+ IFG+R
Sbjct: 203 LSMGMSGDMQAAIESGTTMVRIGTAIFGQR 232
>gi|171319776|ref|ZP_02908862.1| alanine racemase domain protein [Burkholderia ambifaria MEX-5]
gi|171094978|gb|EDT40004.1| alanine racemase domain protein [Burkholderia ambifaria MEX-5]
Length = 232
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 99/205 (48%), Gaps = 17/205 (8%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGS 81
+VSL+AVSK + +R A + GQ F EN +QE+ K L EW FIG
Sbjct: 28 TVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQESIDKIDALADLRTGLEW----HFIGP 83
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQSNK + FD + +V R K A L+ + L V +QVN E KSG+ P
Sbjct: 84 LQSNKTRPVAERFDWVHSVDRLKIAQRLAEQRPAHLPPLNVCVQVNISGEASKSGVAPAD 143
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPK----PHFYL--LSEIARECKLT--KLSMGM 193
+ L + GLM IP G+ PH L L + R LT LSMGM
Sbjct: 144 VAEVARAVAALPTLRLRGLMAIPEPAGDTDAQRAPHRALRALFDTLRADGLTLDTLSMGM 203
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D E A+ GAT VR+G+ +FG R
Sbjct: 204 SADLEAAVLEGATIVRVGTALFGAR 228
>gi|50122967|ref|YP_052134.1| putative alanine racemase [Pectobacterium atrosepticum SCRI1043]
gi|49613493|emb|CAG76944.1| putative alanine racemase [Pectobacterium atrosepticum SCRI1043]
Length = 270
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 112/236 (47%), Gaps = 33/236 (13%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + +I + R +V L+ VSK ++R+A + G I ENK+QEA KW
Sbjct: 29 NLAAVQMRIAAACHRVGRDPATVRLLPVSKTKPESRLRMAYTAGCRILGENKVQEAYGKW 88
Query: 66 IPLRKEWDVQLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
++ D+Q IG LQ+NK V+ S F ++++ + A L + + R L V
Sbjct: 89 EAMQDLADLQWSVIGHLQTNKAKLVARFASEFQALDSL---RLAEALDRRLHVEGRSLDV 145
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++QVNT E K G+ P F+ L V GLM + A+ F +E R
Sbjct: 146 FVQVNTSGEASKYGLSPEDVPAFIQALPAFSALRVRGLMTL--AL------FSSEAERVR 197
Query: 183 EC-------------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+C +L +LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 198 QCFIRLRNLRDRLQQNAPVDIRLDELSMGMSGDFEIAIEEGATVVRVGQAIFGARP 253
>gi|320533958|ref|ZP_08034522.1| pyridoxal phosphate enzyme, YggS family [Actinomyces sp. oral taxon
171 str. F0337]
gi|320133835|gb|EFW26219.1| pyridoxal phosphate enzyme, YggS family [Actinomyces sp. oral taxon
171 str. F0337]
Length = 248
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 107/223 (47%), Gaps = 12/223 (5%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + +I+ +A A R + L+ VSK V +++R A + G ENK+QEA++K
Sbjct: 7 NLDAVRARIDTAAERAGRDAAEIRLLPVSKTVPEERLRAAFAAGITQMGENKVQEAQRKS 66
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L + + IG LQ+NK + + D + + + A L + R L VY+Q
Sbjct: 67 ENL-ADLGISWSVIGHLQTNKAKNVAAFADEFQALDSLRLAEALDRRLQAAGRGLDVYVQ 125
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
VN+ E K G+ P+ DF+ L V GLM + + + F ++ + R
Sbjct: 126 VNSSGEPSKFGLEPDDVADFLAALPAYSSLRVRGLMTLAANTSDEVRVRECFSIMRRL-R 184
Query: 183 ECKLTK-------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ DFE AI G+T VR+G IFG R
Sbjct: 185 DAALQAGTVGDGLLSMGMSGDFEAAIEGGSTCVRVGQAIFGTR 227
>gi|261405677|ref|YP_003241918.1| alanine racemase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|261282140|gb|ACX64111.1| alanine racemase domain protein [Paenibacillus sp. Y412MC10]
Length = 240
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 117/236 (49%), Gaps = 31/236 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+SL ++ +Q+I + + R ++ V+++AV+K V L G + EN+ Q+
Sbjct: 12 LSLKERIDQVEQRITEACARSGRDRNDVNMIAVTKYVSLDMTASVLDHGLLHIGENRWQD 71
Query: 61 AKKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR-------EKTASLLSL 111
A+ KW L R W FIG LQ+NKV +++ F I ++ R EK A+ L+L
Sbjct: 72 AQAKWNALGNRGTW----HFIGHLQTNKVRDVIDKFQYIHSLDRLSLAHELEKRAAALNL 127
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMG 168
+ + +QVN E K G+ P Q +F+ + V GLM + P +
Sbjct: 128 Q-------VSALMQVNISGEESKYGLPPEQAAEFLKEINSLSHVKVTGLMTMAPYESSAE 180
Query: 169 NPKPHFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+P F L ++ E LT+LSMGM+ DFE+AI GAT VR+GS + G
Sbjct: 181 QTRPVFRGLRQLRDELNEQALTAEPLTELSMGMSNDFEVAIEEGATWVRLGSILVG 236
>gi|167552008|ref|ZP_02345761.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205323350|gb|EDZ11189.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
Length = 234
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 110/231 (47%), Gaps = 18/231 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAYIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K +K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQKAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP P+ + E
Sbjct: 123 LNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPA----PESDYVRQFE 178
Query: 180 IARECKLT------------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 179 VARQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|258625609|ref|ZP_05720491.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258582111|gb|EEW06978.1| conserved hypothetical protein [Vibrio mimicus VM603]
Length = 236
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 110/228 (48%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A Q F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAEQRCFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + ++ FIG LQSNK + FD + T+ REK A L+ +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIEREKIAVRLNEQRPADMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVNT E KSGI P Q L L + GLM IP P F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPEQLFTLAELISGLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+E+ ++ + LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPHIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGER 230
>gi|148827239|ref|YP_001291992.1| hypothetical protein CGSHiGG_03010 [Haemophilus influenzae PittGG]
gi|148718481|gb|ABQ99608.1| hypothetical protein CGSHiGG_03010 [Haemophilus influenzae PittGG]
Length = 233
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 110/229 (48%), Gaps = 11/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPH----- 173
L V IQ+N E KSGI P + L + GLM IP P P+
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIPEQEAVFRK 180
Query: 174 ----FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L ++ ++ LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 MSDLFEQLKQVLPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGTR 229
>gi|251791951|ref|YP_003006671.1| hypothetical protein NT05HA_0146 [Aggregatibacter aphrophilus
NJ8700]
gi|247533338|gb|ACS96584.1| conserved hypothetical protein [Aggregatibacter aphrophilus NJ8700]
Length = 234
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 103/208 (49%), Gaps = 13/208 (6%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL--RFIG 80
R + +V L+AVSK + I +A + GQV F EN +QE +K I ++ D+ L FIG
Sbjct: 24 REQSAVKLLAVSKTKPVEDILIAYAAGQVAFGENYVQEGVEK-IQYCQQHDISLEWHFIG 82
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
LQSNK + FD ++T+ R K A L+ + L V IQ+N E KSGI P+
Sbjct: 83 PLQSNKTRLVAEYFDWMQTLERAKIADRLNEQRPPYKAPLNVLIQINISQEATKSGIQPS 142
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP----------KPHFYLLSEIARECKLTKLS 190
L + GLM IP + K F L + ++ LS
Sbjct: 143 DMLTLAKHIENLPHLRLRGLMAIPEPTDDVAQQEQTFCQMKTLFEQLQQALPNAQIDTLS 202
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGMT D + AI G+T VRIG+ IFG+R
Sbjct: 203 MGMTDDMQSAIKCGSTMVRIGTAIFGKR 230
>gi|145300499|ref|YP_001143340.1| hypothetical protein ASA_3631 [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142853271|gb|ABO91592.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 233
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 115/223 (51%), Gaps = 12/223 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQV K++I +A A R D ++L+AVSK + IR A + GQ E+ QEA K
Sbjct: 9 LQV-KERIVQAARQADRCVDHINLLAVSKTKPLEAIREAYAAGQRRLGESYAQEAATKID 67
Query: 67 PLRKE---WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
LRK+ D++ FIG LQSNK + FD +++V R+K L+ + L +
Sbjct: 68 TLRKQAVCTDIEWHFIGPLQSNKSRLVAERFDWVQSVDRDKLIERLNNQRPAGLAPLNIC 127
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK-------PHFYL 176
+Q+N E KSG + L + +L + GLM IP + L
Sbjct: 128 LQINISGESSKSGTSEQEIFRLAELVSRSERLVLRGLMAIPEHTSDEAVLAAQMVRMQTL 187
Query: 177 LSEIAREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E+A++ + LSMGMT D ELAIA G+T VR+G+ IFG R
Sbjct: 188 FTELAQQYPSVDTLSMGMTEDLELAIAHGSTMVRVGTAIFGAR 230
>gi|289741895|gb|ADD19695.1| proline synthetase co-transcribed protein [Glossina morsitans
morsitans]
Length = 250
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 123/234 (52%), Gaps = 30/234 (12%)
Query: 17 SAILAKRPKDSVS----LVAVSKMVDSKKIRVALSCGQVIFAENKLQE-AKKKWIP--LR 69
A +RPKD LVAVSK + I A S GQ F EN +QE K P L+
Sbjct: 18 DAAYEQRPKDLEGGKPFLVAVSKTKPIEMIIDAYSVGQRHFGENYVQELVDKSQHPDILQ 77
Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLS-----LEMIKQSRFLPV 122
K D++ FIG LQ+NKV++I+ L ++ I+TV EK A L+ LE I + L V
Sbjct: 78 KCPDIKWHFIGHLQNNKVNKILKLPNIHLIQTVDTEKLADNLNNSWRKLE-IDNKQPLRV 136
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGN-----PKPHFYL 176
IQ+NT E K+GI PN+ ++ L V+G+M I A G+ P P F
Sbjct: 137 LIQINTSGEDAKNGIEPNEAPRLYKHIKENLTNLQVDGVMTIG-AFGHDYTKGPNPDFVC 195
Query: 177 LSEIARE-CKLTKL-------SMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L ++ R+ C+ L SMGM+ DFE AI G+T VR+GS IFG R Q+
Sbjct: 196 LMQVHRQICEDYHLKPEEVQVSMGMSDDFEKAIEMGSTIVRVGSSIFGHRAKQS 249
>gi|90415261|ref|ZP_01223195.1| hypothetical protein GB2207_08096 [marine gamma proteobacterium
HTCC2207]
gi|90332584|gb|EAS47754.1| hypothetical protein GB2207_08096 [marine gamma proteobacterium
HTCC2207]
Length = 257
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 112/225 (49%), Gaps = 12/225 (5%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N + ++I+ SA R + + L+AVSK ++ IR A+ G FAEN LQEA +K
Sbjct: 32 NNIAGVSKRIDQSAAECGRDPNDILLLAVSKTRSAEYIRQAMDAGLSHFAENYLQEALEK 91
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
L E ++ FIG LQSNK F + +V R K A LS + + L + +
Sbjct: 92 IAELEGE-NLCWHFIGPLQSNKTRNAAENFSWVHSVDRLKIAQRLSDQRPESLGPLNICL 150
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVN E KSG + + + + L + GLM IP A + + +++A C
Sbjct: 151 QVNIDNEPSKSGFLVDALLPIALQIAKLPNLRLRGLMAIPRATNSVQEQQAAFNKLAELC 210
Query: 185 -----------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
KL LSMGM+ D E AI+ G+T VR+G+ IFG+R
Sbjct: 211 QQINQSLDNSEKLDTLSMGMSGDLEAAISQGSTMVRVGTDIFGKR 255
>gi|68248701|ref|YP_247813.1| hypothetical protein NTHI0168 [Haemophilus influenzae 86-028NP]
gi|68056900|gb|AAX87153.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP]
Length = 237
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 113/233 (48%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK +I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISEILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQGVNLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYL 176
L V IQ+N E KSGI P + L + GLM IP + + F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|326382735|ref|ZP_08204425.1| alanine racemase domain protein [Gordonia neofelifaecis NRRL
B-59395]
gi|326198325|gb|EGD55509.1| alanine racemase domain protein [Gordonia neofelifaecis NRRL
B-59395]
Length = 256
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 106/224 (47%), Gaps = 12/224 (5%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + +I+ +A A R V L+ VSK V ++I A++ G ENK+QEAK+K
Sbjct: 24 NLAAVRARIDAAATRAGRDPGEVQLLPVSKTVPEERIVNAVAAGCRTLGENKVQEAKRKH 83
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L DV IG LQ+NK ++ + + + + A L + R + VY+Q
Sbjct: 84 DAL-AHLDVDWSVIGHLQTNKAKDVAAFASEFQALDSLRIAEALDRRLQAAGRGIDVYVQ 142
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
VNT E K G+ P + D + L V GLM + + +P F LL +
Sbjct: 143 VNTSSEDSKYGLTPAELPDLLRQLPAYSSLRVRGLMTLAVFSDDAERVRPCFQLLRSLRD 202
Query: 183 ECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ D+ELAI G+T VR+G IFG R
Sbjct: 203 RIRDEDPDLIGDGGLSMGMSGDYELAIEEGSTCVRVGQAIFGAR 246
>gi|53725752|ref|YP_103964.1| hypothetical protein BMA2411 [Burkholderia mallei ATCC 23344]
gi|67643504|ref|ZP_00442249.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
gi|121601554|ref|YP_991679.1| hypothetical protein BMASAVP1_A0328 [Burkholderia mallei SAVP1]
gi|124386248|ref|YP_001027174.1| hypothetical protein BMA10229_A1189 [Burkholderia mallei NCTC
10229]
gi|126450302|ref|YP_001082124.1| hypothetical protein BMA10247_2598 [Burkholderia mallei NCTC 10247]
gi|166998486|ref|ZP_02264344.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei
PRL-20]
gi|254178844|ref|ZP_04885498.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei ATCC
10399]
gi|254202680|ref|ZP_04909043.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei FMH]
gi|254208020|ref|ZP_04914370.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei JHU]
gi|254355840|ref|ZP_04972118.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei
2002721280]
gi|52429175|gb|AAU49768.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei ATCC
23344]
gi|121230364|gb|ABM52882.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei
SAVP1]
gi|124294268|gb|ABN03537.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei NCTC
10229]
gi|126243172|gb|ABO06265.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei NCTC
10247]
gi|147746927|gb|EDK54004.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei FMH]
gi|147751914|gb|EDK58981.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei JHU]
gi|148024815|gb|EDK82993.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei
2002721280]
gi|160694758|gb|EDP84766.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei ATCC
10399]
gi|238524864|gb|EEP88294.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
gi|243065176|gb|EES47362.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei
PRL-20]
Length = 245
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 112/227 (49%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +QE+
Sbjct: 4 LAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQESI 63
Query: 63 KK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K LR E ++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 64 DKISTLADLRAE--LEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLPP 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK----PH-- 173
L V +QVN E KSG+ P L + GLM IP +P+ PH
Sbjct: 122 LNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLRGLMAIPEPETDPEAKRAPHRA 181
Query: 174 FYLLSEIARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L E R L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 182 LHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGAR 228
>gi|282902034|ref|ZP_06309932.1| protein of unknown function UPF0001 [Cylindrospermopsis raciborskii
CS-505]
gi|281193121|gb|EFA68120.1| protein of unknown function UPF0001 [Cylindrospermopsis raciborskii
CS-505]
Length = 222
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 113/218 (51%), Gaps = 15/218 (6%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
E I+ + SV L+AVSK V ++ +R A G F E+++QEA K I L+ D+
Sbjct: 7 ERVTIIRAQLPPSVRLIAVSKQVSTQLMREAYGAGIRDFGESRIQEAASKQIELQDLPDI 66
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY--IQVNTGYEI 132
FIG LQSNK + V LF I +V A L I Q+ +Y +QV +
Sbjct: 67 TWHFIGHLQSNKAKKAVELFSWIHSVDNLHIAE--RLHTIAQTMGTNLYSCLQVKILPDP 124
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP------AMGNPKPHFY-LLSEIARE-- 183
QKSG Q + Q L ++GLM IPP + + H Y L EIA +
Sbjct: 125 QKSGWTVPQLLAELPFLSQYQSLQIQGLMTIPPWGLKEEQILHVFNHTYNLAQEIASQKW 184
Query: 184 --CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ +LSMGM+ D+ELA+ +GAT VR+G+ +FG RP
Sbjct: 185 ANIEMRELSMGMSGDYELAVKAGATMVRLGTILFGNRP 222
>gi|269837214|ref|YP_003319442.1| alanine racemase domain-containing protein [Sphaerobacter
thermophilus DSM 20745]
gi|269786477|gb|ACZ38620.1| alanine racemase domain protein [Sphaerobacter thermophilus DSM
20745]
Length = 239
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 112/230 (48%), Gaps = 15/230 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVD---SKKIRVALSCGQVIFAENKL 58
++ K+ ++ + +A A R S+ +V V+K + + + A + G F EN++
Sbjct: 10 TVAEKVARVQELVRAAAERAGRDPASIRIVGVTKTLPPDANATVEAAWAAGLRDFGENRV 69
Query: 59 QEAKKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
Q+A KK L E L IG LQ+NK + V LF +I +V R L +
Sbjct: 70 QDAAKKVSTLFTAVLEEGATLHLIGHLQTNKARDAVRLFSLIHSVDRPGLVDALQRRAER 129
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KP 172
+ + + +QVN E QK G P + + + + L+V GLM I P + +P +P
Sbjct: 130 EGKRQDILLQVNVAREEQKHGCAPEEAEALLRHAAAQPNLHVRGLMTIAPLVDDPEETRP 189
Query: 173 HFYLLSEI------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
F L + A L +LSMGMT D+E+AI GAT +R+G IFG
Sbjct: 190 VFAALRSLRDQLQEATGIALPELSMGMTNDYEVAIEEGATIIRVGRAIFG 239
>gi|206561630|ref|YP_002232395.1| hypothetical protein BCAL3291 [Burkholderia cenocepacia J2315]
gi|198037672|emb|CAR53615.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
Length = 232
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 97/205 (47%), Gaps = 17/205 (8%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGS 81
+V+L+AVSK + +R A + GQ F EN +QE+ K L EW FIG
Sbjct: 28 TVALLAVSKTFPADDVRAAHAAGQRAFGENYVQESIDKIDALADLRASLEW----HFIGP 83
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQSNK + FD + +V R K A LS + L V +QVN E KSG+ P
Sbjct: 84 LQSNKTRPVAERFDWVHSVDRLKIAQRLSEQRPAHLPPLNVCVQVNISGEASKSGVAPAD 143
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPK----PHFYLLSEI----ARECKLTKLSMGM 193
+ L + GLM IP +P PH L + A L LSMGM
Sbjct: 144 VAEVARAVAALPSLRLRGLMAIPEPADDPDAQRAPHRALRALFDTLRAGGLPLDTLSMGM 203
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D + A+ GAT VR+G+ IFG R
Sbjct: 204 SADLDAAVLEGATIVRVGTAIFGAR 228
>gi|117619465|ref|YP_858120.1| hypothetical protein AHA_3664 [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117560872|gb|ABK37820.1| conserved hypothetical protein TIGR00044 [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 233
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 114/223 (51%), Gaps = 12/223 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQV K++I +A A R +D + L+AVSK + + A + GQ F E+ QEA K
Sbjct: 9 LQV-KERIVQAASRAGRSRDHIQLLAVSKTKPLEAVCEAYAAGQRRFGESYAQEAATKID 67
Query: 67 PLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
LR++ D++ FIG LQSNK + FD +++V REK L+ + L V
Sbjct: 68 TLREQGACADIEWHFIGPLQSNKSKLVAERFDWVQSVDREKLIERLNNQRPSGLAPLNVC 127
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK-------PHFYL 176
+Q+N E KSG + L + +L + GLM IP + L
Sbjct: 128 LQINISGESSKSGTSEQEIFRLAELVSRCERLRLRGLMAIPEHTSDEAVLAAQMVRMQTL 187
Query: 177 LSEIAREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E+A++ + LSMGMT D ELAI G+T VRIG+ IFG R
Sbjct: 188 FTELAQQYPGVDTLSMGMTEDLELAIGHGSTMVRIGTAIFGAR 230
>gi|326333487|ref|ZP_08199729.1| pyridoxal phosphate enzyme, YggS family [Nocardioidaceae bacterium
Broad-1]
gi|325948732|gb|EGD40830.1| pyridoxal phosphate enzyme, YggS family [Nocardioidaceae bacterium
Broad-1]
Length = 233
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 112/220 (50%), Gaps = 14/220 (6%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+++I +A A RP + V LV V+K + +R+ G EN+ QEA K +
Sbjct: 16 RERIAVAAKAAGRPAEDVHLVVVTKFFPASDVRILAGLGVTDVGENRHQEAAAKAA---E 72
Query: 71 EWDVQLR--FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN- 127
D+ LR +IG LQSNK + + S DV+E+V R S LS ++ + L V +QV+
Sbjct: 73 CADLGLRWHYIGGLQSNKAAAVASYADVVESVDRSSLLSRLSRGAGERGQILDVLLQVSL 132
Query: 128 --TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC- 184
G E ++G P +D + L + GLM + P +P P F L+ I +
Sbjct: 133 DPPGRE-GRAGADPGDVRDLAAEVMETDGLRLRGLMAVAPLGEDPDPAFVRLARIREDFL 191
Query: 185 ----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ T LS GM+ D E AIA GAT VR+GS + GERP
Sbjct: 192 VEYPEATVLSAGMSGDLEQAIAHGATHVRVGSAVLGERPT 231
>gi|317151980|ref|YP_004120028.1| alanine racemase domain-containing protein [Desulfovibrio
aespoeensis Aspo-2]
gi|316942231|gb|ADU61282.1| alanine racemase domain protein [Desulfovibrio aespoeensis Aspo-2]
Length = 235
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 102/208 (49%), Gaps = 11/208 (5%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
P D ++LVAVSK + +R GQ F EN +QEA K L + + FIG LQ
Sbjct: 30 PGD-ITLVAVSKFHAASDVRALAGAGQADFGENYVQEALAKREAL-ADLGLNWHFIGGLQ 87
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
SNK +V F ++ +V K A L + + + IQVN E QKSGI
Sbjct: 88 SNKARFVVGNFCLVHSVDSHKLAQALHKKASELGVVQDILIQVNGAGEAQKSGITEENLI 147
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI--ARECKLTK----LSMGMT 194
+ + GLM +PP +P +P F L E+ A E +L LSMGMT
Sbjct: 148 PLAEAVLGMGGVRLVGLMTLPPFFDDPARARPVFARLRELRDALEARLGHRLPHLSMGMT 207
Query: 195 RDFELAIASGATSVRIGSGIFGERPCQT 222
DF A+ GAT VRIG+ IFG RP +T
Sbjct: 208 GDFVPAVEEGATLVRIGTRIFGARPRRT 235
>gi|119356538|ref|YP_911182.1| alanine racemase domain-containing protein [Chlorobium
phaeobacteroides DSM 266]
gi|119353887|gb|ABL64758.1| alanine racemase domain protein [Chlorobium phaeobacteroides DSM
266]
Length = 229
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 118/232 (50%), Gaps = 20/232 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ + L +++I ++ A R V L+AVSK ++ +R A GQ+ F E+ +QE
Sbjct: 3 SIASNLNRIREQIGTLSVKAGREPSDVRLIAVSKTKPARLVREAFDAGQIEFGESYVQEF 62
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ PL + +Q FIG LQSNK+ I ++ + R TA+ LS ++Q+
Sbjct: 63 LEKRDDPLLQGLPLQWHFIGHLQSNKIRSIAGKVALVHGIDRLSTAAELSRRSMQQNLHT 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-----QLNVEGLMCIP-PAMGNPKPHF 174
++VNT E K GI P+ V+L + + + GLM I P + F
Sbjct: 123 EFLLEVNTSGEQTKYGISPD-----VLLSEAEKIFKLPNIALRGLMTIASPDTDLARKEF 177
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + K LT+LSMGM++DFE AI GAT +RIG+ IFG R
Sbjct: 178 RELRNLLEALKKNAPDPTLLTELSMGMSQDFESAIEEGATIIRIGTAIFGWR 229
>gi|120609338|ref|YP_969016.1| alanine racemase domain-containing protein [Acidovorax citrulli
AAC00-1]
gi|120587802|gb|ABM31242.1| alanine racemase domain protein [Acidovorax citrulli AAC00-1]
Length = 241
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 109/242 (45%), Gaps = 33/242 (13%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++GN LQ +I + A R V L+AVSK + +R A GQ F EN +QE
Sbjct: 3 TIGNNLQGVLDRIARACAQAGREPSGVRLLAVSKTFGAPSVREAALAGQRAFGENYIQEG 62
Query: 62 KKKWIPLRK---------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
+K L + EW IG +QSNK + FD + TV R KTA LS +
Sbjct: 63 VEKIAALGQPESGLAHPLEWHC----IGPVQSNKTRLVAEHFDWVHTVDRLKTAERLSQQ 118
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
L V IQVN K+G+ P++ + + +L + GLM IP P P
Sbjct: 119 RPDHLPALQVCIQVNVDGGATKAGLPPDEAPGLALAVARLPRLRLRGLMAIP----EPAP 174
Query: 173 HFYLLSEIARECK----------------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
F + + K LS+GMT D E AI +G+T VR+GSGIFG
Sbjct: 175 DFAAQFAVHAQAKALFDRLRASGAPGLEDFDTLSLGMTADLEAAIHAGSTMVRVGSGIFG 234
Query: 217 ER 218
R
Sbjct: 235 AR 236
>gi|260906351|ref|ZP_05914673.1| hypothetical protein BlinB_13566 [Brevibacterium linens BL2]
Length = 263
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 110/218 (50%), Gaps = 12/218 (5%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
++IE++A+ R V L+ VSK V ++IR A++ G ENK+QEA +K + +
Sbjct: 35 RRIESAAVRVGRDAAEVELLPVSKTVPQERIRQAVAAGCHKLGENKVQEAFRKSGEM-AD 93
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
D+ IG LQSNK ++ + + R K A+ L + R L VY+QVNT E
Sbjct: 94 LDIDWAVIGHLQSNKARDVAKFASEFQALDRLKVAAALDRRLQAAGRSLDVYVQVNTSAE 153
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIARECKLTK 188
K G+ P + F+ Q L V+GLM + + + F L + + + T
Sbjct: 154 ESKFGMPPEELPGFLRELPQFSALKVQGLMTLAIFSSDIARVRTCFQRLRTLRDQAQDTN 213
Query: 189 --------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D+E+AI GA VR+G IFG+R
Sbjct: 214 PELIGRGSLSMGMSGDYEVAIEEGANCVRVGQAIFGKR 251
>gi|156743669|ref|YP_001433798.1| alanine racemase domain-containing protein [Roseiflexus
castenholzii DSM 13941]
gi|156234997|gb|ABU59780.1| alanine racemase domain protein [Roseiflexus castenholzii DSM
13941]
Length = 240
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 103/212 (48%), Gaps = 21/212 (9%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIGSLQSNK 86
+ LV V+K + IR AL+ G EN++QEA+ K L + + L IG LQ+NK
Sbjct: 29 IRLVGVTKAQPVEAIRAALAAGLHEIGENRVQEAEAKMSALAADRRRLTLHLIGHLQTNK 88
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-------MP 139
+ +LFD++ +V + A +L + + LPV +QVN E+ KSG +P
Sbjct: 89 AKKAATLFDMVHSVDSLRLAQILDRHAAETTDRLPVLLQVNVSGEMTKSGFDLCHWETLP 148
Query: 140 NQTKDFVILCRQKY---QLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLT------ 187
+ F Q L V GLM I P +P +P F + L
Sbjct: 149 DVYDRFCADVEQILALPHLEVRGLMTIAPWGPDPEQARPVFRAARRLRDSLALRFPATAW 208
Query: 188 -KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGMT DFE+AI GAT VRIG IFGER
Sbjct: 209 RDLSMGMTDDFEVAIEEGATIVRIGRAIFGER 240
>gi|295109994|emb|CBL23947.1| pyridoxal phosphate enzyme, YggS family [Ruminococcus obeum A2-162]
Length = 230
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 112/227 (49%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ ++ IE + A R V+L++VSK ++ A G F ENK+QE
Sbjct: 2 VAENLEQVRKNIELACKEAGRDPKEVTLISVSKTKPVSMLQEAYDAGSRDFGENKVQEIM 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L D++ IG LQ NKV IV +I +V + A + E K S +PV
Sbjct: 62 DKVPQLPS--DIRWHMIGHLQRNKVKYIVDKVALIHSVDSLRLAETIEHEAAKHSVTVPV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN E K G+ + V +++EGLM I P + +P+ + + ++ +
Sbjct: 120 LIEVNVAQEESKFGLKTEEVLSLVESVASFPHIHIEGLMTIAPYVEDPEENRGIFRQLKK 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGMT D+++A+ GAT VR+G+GIFGER
Sbjct: 180 LSVDIAAKNINNVNMSVLSMGMTGDYQVAVQEGATMVRVGTGIFGER 226
>gi|315225144|ref|ZP_07866961.1| YggS family pyridoxal phosphate enzyme [Capnocytophaga ochracea
F0287]
gi|314944827|gb|EFS96859.1| YggS family pyridoxal phosphate enzyme [Capnocytophaga ochracea
F0287]
Length = 241
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 15/225 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ + +Q+I N+ R + V L+ +K V ++I+VAL+ G + AENK+QE K+K+
Sbjct: 8 IALVQQRIANTCERVGRKPEEVKLLLATKTVTPERIKVALNAGYTLIAENKVQELKEKYE 67
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRFLPVYI 124
L+ FIG LQ+NK+ +I+ ++V +E+V R A L + + + L ++I
Sbjct: 68 ALKDTPHTN-HFIGHLQTNKIKDILR-YEVSCVESVDRLDLAQKLHNRLESEGKELDIFI 125
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAMGNPKPHFYLLSEIA 181
QVNT E K G P++ + V L+++GLM I + F LL +
Sbjct: 126 QVNTSNEENKFGADPSEVLNLVKQVATLPTLHIKGLMTIGLFSAETEKVRACFKLLKHLQ 185
Query: 182 RE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E +LSMGM+ D E AI GAT VR+G+ IFG+R
Sbjct: 186 QEIIALNLPNVDPRELSMGMSGDLETAIEEGATIVRVGTAIFGKR 230
>gi|302036140|ref|YP_003796462.1| hypothetical protein NIDE0769 [Candidatus Nitrospira defluvii]
gi|300604204|emb|CBK40536.1| conserved protein of unknown function, UPF0001 [Candidatus
Nitrospira defluvii]
Length = 235
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 20/232 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +++ +++ +A A R +SV L+A SK V +++R A+ G EN+LQEA
Sbjct: 7 TIAGRVRAVLDEMQRAAARAGRLPESVRLIAASKTVSVERLRQAVDAGVRHLGENRLQEA 66
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L +E V FIG+LQ KV +V F+ I +V + L+ E+ +Q++
Sbjct: 67 LPKIDTLERE-GVVWHFIGTLQRRKVKSVVGRFETIHSVD----SLALAEEIDRQAKTAG 121
Query: 122 ----VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHF 174
+ ++VN E K G P + L++ GLM IPP + +P+F
Sbjct: 122 LRQRILLEVNLAGEASKGGFEPTTLVAALESLNGFEHLDIRGLMAIPPPTPTAEDARPYF 181
Query: 175 YLLSEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +A R + +LSMGM+ D+ +AI GAT VR+G+ IFG R
Sbjct: 182 RQLRTLAQALTARGYRNINMQELSMGMSHDYPVAIEEGATYVRVGTAIFGAR 233
>gi|126439936|ref|YP_001060310.1| hypothetical protein BURPS668_3299 [Burkholderia pseudomallei 668]
gi|126451773|ref|YP_001067570.1| hypothetical protein BURPS1106A_3333 [Burkholderia pseudomallei
1106a]
gi|167920374|ref|ZP_02507465.1| hypothetical protein BpseBC_17639 [Burkholderia pseudomallei
BCC215]
gi|237813700|ref|YP_002898151.1| pyridoxal phosphate enzyme, YggS family [Burkholderia pseudomallei
MSHR346]
gi|242315201|ref|ZP_04814217.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
1106b]
gi|254180739|ref|ZP_04887337.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
1655]
gi|126219429|gb|ABN82935.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
668]
gi|126225415|gb|ABN88955.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
1106a]
gi|184211278|gb|EDU08321.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
1655]
gi|237506063|gb|ACQ98381.1| pyridoxal phosphate enzyme, YggS family [Burkholderia pseudomallei
MSHR346]
gi|242138440|gb|EES24842.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
1106b]
Length = 232
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 112/228 (49%), Gaps = 13/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +QE+
Sbjct: 3 DLAARLASVHRRIDEAARAAGRAPGSVALLAVSKTFPADAVRAAYAAGQRAFGENYVQES 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K LR E ++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 63 IDKISTLADLRAE--LEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK----PH- 173
L V +QVN E KSG+ P L + GLM IP +P+ PH
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLRGLMAIPEPETDPEAKRAPHR 180
Query: 174 -FYLLSEIARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L E R L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 181 ALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGAR 228
>gi|313903980|ref|ZP_07837360.1| alanine racemase domain protein [Eubacterium cellulosolvens 6]
gi|313471129|gb|EFR66451.1| alanine racemase domain protein [Eubacterium cellulosolvens 6]
Length = 230
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 101/209 (48%), Gaps = 13/209 (6%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R V+L+AVSK I G F EN +QE ++K L D++ IG
Sbjct: 20 AGRDASEVTLIAVSKTKPESDIMELYDHGVRDFGENYIQELREKHEHLPS--DIRWHMIG 77
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
LQ NKV I +I V + A + E K R +PV I+VN E K G+ P
Sbjct: 78 HLQRNKVKYIAEYVTMIHAVDTLELAKTIEKEAAKHDRVIPVLIEVNVAGEESKFGVAPE 137
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSE----IARE----CKLTKL 189
+TK+FV ++V GLM P + N + + F L E I RE + L
Sbjct: 138 ETKEFVKAVSVLPHVHVSGLMTSAPFVKNAEENRSVFEKLHELSVDINRENIDNVTMRVL 197
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMGMT D+ +A+ GAT VR+G+ IFG R
Sbjct: 198 SMGMTNDYNVAVEEGATLVRVGTAIFGAR 226
>gi|209520451|ref|ZP_03269211.1| alanine racemase domain protein [Burkholderia sp. H160]
gi|209499096|gb|EDZ99191.1| alanine racemase domain protein [Burkholderia sp. H160]
Length = 240
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 108/229 (47%), Gaps = 17/229 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L ++I +A A R SV+L+AVSK + +R A + GQ F EN +QE+
Sbjct: 12 LAHNLADVHERIARAAQAAGRDAQSVALLAVSKTFPADAVRAAHAAGQRAFGENYVQESL 71
Query: 63 KKWIPLRK-----EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K L EW FIG LQSNK + FD + +V R K A LS +
Sbjct: 72 DKIRTLADLRASLEW----HFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDDL 127
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPH 173
L V +QVN E KSG+ + D + +L + GLM IP G+ PH
Sbjct: 128 PPLNVCLQVNISGEASKSGVTVAEAADIAQQIAELPKLRLRGLMSIPEPAGDLDEQRAPH 187
Query: 174 FYLLSEIAR----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L R L LSMGM+ D E A+ GAT VRIG+ IFG R
Sbjct: 188 RELRELFERLRNDGLALDTLSMGMSEDLEAAVLEGATIVRIGTAIFGAR 236
>gi|146284278|ref|YP_001174431.1| TIM-barrel fold family protein [Pseudomonas stutzeri A1501]
gi|145572483|gb|ABP81589.1| predicted enzyme with a TIM-barrel fold [Pseudomonas stutzeri
A1501]
Length = 229
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 106/211 (50%), Gaps = 6/211 (2%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I +A R +V L+AVSK + IR A + G F EN LQEA K L +
Sbjct: 14 RIREAAQAVGREPATVGLLAVSKTQPAAAIRDAFAAGLRDFGENYLQEALDKQAEL-DDL 72
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
+ FIG +QSNK I FD + +V R K A LS + + L + +QVN E
Sbjct: 73 PLTWHFIGPIQSNKTKAIAEHFDWVHSVDRLKIAQRLSDQRPEALPPLNICLQVNVSGEA 132
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE--CKLT 187
KSG P + + +L + GLMCIP +P + F L ++ E L
Sbjct: 133 SKSGCAPQEVQQLARAITALPRLRLRGLMCIPAPSEDPAEQRAAFARLRQLRDELALDLD 192
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM++D E AIA GAT VRIG+ +FG R
Sbjct: 193 TLSMGMSQDLEAAIAEGATWVRIGTALFGAR 223
>gi|53720454|ref|YP_109440.1| hypothetical protein BPSL2846 [Burkholderia pseudomallei K96243]
gi|167817288|ref|ZP_02448968.1| hypothetical protein Bpse9_19264 [Burkholderia pseudomallei 91]
gi|167912418|ref|ZP_02499509.1| hypothetical protein Bpse112_18169 [Burkholderia pseudomallei 112]
gi|217420924|ref|ZP_03452429.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
576]
gi|226194204|ref|ZP_03789803.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
Pakistan 9]
gi|254191574|ref|ZP_04898077.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
Pasteur 52237]
gi|254194883|ref|ZP_04901313.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
S13]
gi|254257980|ref|ZP_04949034.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
1710a]
gi|254299169|ref|ZP_04966619.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
406e]
gi|52210868|emb|CAH36856.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|157809158|gb|EDO86328.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
406e]
gi|157939245|gb|EDO94915.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
Pasteur 52237]
gi|169651632|gb|EDS84325.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
S13]
gi|217396336|gb|EEC36353.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
576]
gi|225933669|gb|EEH29657.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
Pakistan 9]
gi|254216669|gb|EET06053.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
1710a]
Length = 232
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 112/228 (49%), Gaps = 13/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +QE+
Sbjct: 3 DLAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQES 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K LR E ++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 63 IDKISTLADLRAE--LEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK----PH- 173
L V +QVN E KSG+ P L + GLM IP +P+ PH
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLRGLMAIPEPETDPEAKRAPHR 180
Query: 174 -FYLLSEIARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L E R L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 181 ALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGAR 228
>gi|34495633|ref|NP_899848.1| hypothetical protein CV_0178 [Chromobacterium violaceum ATCC 12472]
gi|34101488|gb|AAQ57857.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 231
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 114/228 (50%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
SL ++LQ + +++ + A R + +L+AVSK + +R A +CGQ F EN +QE
Sbjct: 4 SLSSRLQQVRLRLDAACAAAGRAPGAAALLAVSKTFPADALRAAYACGQRAFGENYVQEL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K L +++ FIG LQSNK + + ++ R K A LS + L
Sbjct: 64 QQKCEAL-AGLEIEWHFIGPLQSNKTRIVAERAHWVHSIDRLKIAERLSAQRPDGLPALN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPK--PHFYLLS 178
V +QVN E KSG P + +L + GLMCIP P + F L
Sbjct: 123 VCVQVNVSGEDSKSGCAPEEAAALARAVAALPRLRLRGLMCIPEPTEDTARLAAQFARLR 182
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ R+ L LSMGM+ D E A+A GAT VR+GS IFG+R Q
Sbjct: 183 GLQRQLNAEGLALDTLSMGMSADLETAVAEGATLVRVGSAIFGQRDYQ 230
>gi|33592437|ref|NP_880081.1| hypothetical protein BP1320 [Bordetella pertussis Tohama I]
gi|33601847|ref|NP_889407.1| hypothetical protein BB2871 [Bordetella bronchiseptica RB50]
gi|33572082|emb|CAE41614.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|33576284|emb|CAE33363.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
gi|332381853|gb|AEE66700.1| hypothetical protein BPTD_1308 [Bordetella pertussis CS]
Length = 271
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 107/223 (47%), Gaps = 39/223 (17%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R V L+ VSK VD +IR++ + G ENK+QEA +KW + D++ IG
Sbjct: 43 AGRDPAGVRLLPVSKTVDEARIRMSYAAGCRELGENKVQEAYRKWEAMADLADLRWSVIG 102
Query: 81 SLQSNK---VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
LQ+NK V+ + F +++V + A L + + R L VY+QVNT E K G+
Sbjct: 103 HLQTNKAKLVARFAAEFQALDSV---RLAEALERRLQAEGRALDVYVQVNTSGEASKYGL 159
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA---REC---------- 184
P++ F+ L V GLM + +LS A R+C
Sbjct: 160 HPDEAAAFIRQLPSYGALRVRGLMTLA-----------VLSADAARVRQCFVLLRTLRDR 208
Query: 185 ---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +LSMGM+ D+E+AI GAT VR+G I+G R
Sbjct: 209 LRQEAPAGVSLDELSMGMSGDYEIAIEEGATVVRVGQAIYGAR 251
>gi|332142462|ref|YP_004428200.1| alanine racemase domain protein [Alteromonas macleodii str. 'Deep
ecotype']
gi|327552484|gb|AEA99202.1| alanine racemase domain protein [Alteromonas macleodii str. 'Deep
ecotype']
Length = 232
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L ++ I+ +A A RP +SV L+AVSK I A GQ +F EN +QE
Sbjct: 3 TIAERLNSARKGIDQAANSAHRPPNSVKLLAVSKTKPVSDIIEAYEAGQRMFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L +++ IG +QSNK + FD +++V REK A L+ + + L
Sbjct: 63 VEKVQELSNLDNIEWHMIGPIQSNKTKVVAEHFDWVQSVDREKIARRLNEQRPESLPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
V IQVN E KSG+ ++ V + +L + GLM IP A + + LS++
Sbjct: 123 VCIQVNVDDEDSKSGVSLSELASLVEFVSSQERLCLRGLMAIPKANPDDEQQRQTLSKLK 182
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LS+GM+ D AI G+T VR+G+ IFG+R
Sbjct: 183 ELFDHYHTSLSNFDTLSVGMSSDMVEAIHHGSTMVRVGTAIFGKR 227
>gi|152994581|ref|YP_001339416.1| alanine racemase domain-containing protein [Marinomonas sp. MWYL1]
gi|150835505|gb|ABR69481.1| alanine racemase domain protein [Marinomonas sp. MWYL1]
Length = 242
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 104/205 (50%), Gaps = 8/205 (3%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81
+R SV L+AVSK + A + GQ F EN +QEA K+ L D++ FIG
Sbjct: 32 QRETGSVRLLAVSKTKPLSALEAAYAAGQRAFGENYVQEAVDKFHALAHLVDIEWHFIGP 91
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
+QSNK I + ++ REK A LS + K L V IQVN E K+G+ ++
Sbjct: 92 IQSNKSRLIAETMHWVHSIDREKIARRLSEQRPKDLPPLNVCIQVNISGEESKAGVALSE 151
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNP-------KPHFYLLSEIAR-ECKLTKLSMGM 193
D V L + L + GLM IP + +P E+++ + + LS+GM
Sbjct: 152 LNDMVALITELPNLRLRGLMAIPAPQKSHEAQCLVYEPLRQAFVELSKSDSMIDTLSIGM 211
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D AI SG+T VR+G+ IFGER
Sbjct: 212 SGDLPAAIQSGSTMVRVGTAIFGER 236
>gi|268593080|ref|ZP_06127301.1| pyridoxal phosphate enzyme, YggS family [Providencia rettgeri DSM
1131]
gi|291311349|gb|EFE51802.1| pyridoxal phosphate enzyme, YggS family [Providencia rettgeri DSM
1131]
Length = 230
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 108/226 (47%), Gaps = 8/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ N + +IE++A +R ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 1 MTIQNNISDVTARIEHAAAECQRSPQDITLLAVSKTKPCEAISEAIEAGQRQFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D+ FIG LQSNK + FD T+ R K A L+ + + L
Sbjct: 61 GVEKIQYFSHRNDLIWHFIGPLQSNKSRLVAEHFDWFHTLDRAKIAQRLNDQRPSEKSPL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQ+N E KSGI + + L + GLM IP + + F+ +
Sbjct: 121 NVLIQINISDENSKSGITLAEVTELAAQVATMPNLVLRGLMTIPAPETDYERQCAVFHQM 180
Query: 178 SEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E + K T LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 NEAFEQLKTTYPTVDTLSMGMTDDMRAAIHCGSTLVRIGTAIFGAR 226
>gi|227326779|ref|ZP_03830803.1| putative alanine racemase [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 270
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 107/233 (45%), Gaps = 27/233 (11%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + +I + R +V L+ VSK ++R+A + G I ENK+QEA +KW
Sbjct: 29 NLAAVQMRIAAACHRVGRDPATVRLLPVSKTKPESRLRMAHTAGCRILGENKVQEAYRKW 88
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++ D+Q IG LQ+NK + + + + A L + + R L V++Q
Sbjct: 89 EAMQDLADLQWSVIGHLQTNKAKLVARFATEFQALDSLRLAEALDRRLHVEGRSLDVFVQ 148
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC- 184
VNT E K G+ P F+ L V GLM + A+ F +E R+C
Sbjct: 149 VNTSGEASKYGLSPEDVPAFIQALPAFPTLRVRGLMTL--AL------FSSEAERVRQCF 200
Query: 185 ------------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 201 IRLRNLRDKLQQNAPVGIGLDELSMGMSGDFEIAIEEGATVVRVGQAIFGARP 253
>gi|77461540|ref|YP_351047.1| hypothetical protein Pfl01_5319 [Pseudomonas fluorescens Pf0-1]
gi|77385543|gb|ABA77056.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
Length = 228
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 106/221 (47%), Gaps = 11/221 (4%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N LQV +I + A R ++SV L+AVSK S+ +R A + G F EN LQEA K
Sbjct: 7 NILQV-SSRIHAATAAAGRDENSVQLLAVSKTKPSEALREAYAAGLRDFGENYLQEALGK 65
Query: 65 WIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ L D+ L FIG +QSNK I F + +V R K A LS + L +
Sbjct: 66 QLELA---DLPLIWHFIGPIQSNKTRSIAEHFAWVHSVDRLKIAQRLSEQRPADLPPLNI 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
IQVN E KSG P +L + GLM IP + + + +
Sbjct: 123 CIQVNVSGEASKSGCTPQDLPALAQAISALPRLKLRGLMAIPEPTEDRAEQDAAFAAVQK 182
Query: 183 -----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 183 LQAGLDLPLDTLSMGMSHDLESAIAQGATWVRIGTALFGAR 223
>gi|291546182|emb|CBL19290.1| pyridoxal phosphate enzyme, YggS family [Ruminococcus sp. SR1/5]
Length = 230
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 13/207 (6%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R + V+L+AVSK + ++ A G +F ENK+QE K+ + DV+ IG L
Sbjct: 22 RDPNEVTLIAVSKTKPVEMLKEAYDAGARVFGENKVQEIVDKYDQMPS--DVKWHMIGHL 79
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q NKV IV +I +V + A + E K++ +P+ I+VN E K G+ P +
Sbjct: 80 QRNKVKYIVDKVAMIHSVDSLRLAETIEKEAAKKAVIVPILIEVNVAQEESKFGLKPEEV 139
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR-----------ECKLTKLSM 191
+ + ++GLM I P + N + + + E+ + ++ LSM
Sbjct: 140 LPLIEQIADFSHIRIKGLMTIAPYVDNAEENREIFRELKKLSVDIAAKNINNVTMSVLSM 199
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GMT D+ +A+ GAT VR+G+GIFG R
Sbjct: 200 GMTGDYMVAVQEGATMVRVGTGIFGAR 226
>gi|256395234|ref|YP_003116798.1| alanine racemase domain-containing protein [Catenulispora
acidiphila DSM 44928]
gi|256361460|gb|ACU74957.1| alanine racemase domain protein [Catenulispora acidiphila DSM
44928]
Length = 247
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 104/226 (46%), Gaps = 16/226 (7%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L ++ I +A A R VSL+AV+K + +RV G + EN+ QEA K
Sbjct: 24 NLAAVREDIAAAARKASRDPSEVSLIAVTKTYPASDVRVLAELGVLDVGENRDQEAAPK- 82
Query: 66 IPLRKEWDVQLR--FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
R + LR FIG LQ+NK S + D + +V R + + LS ++ + L
Sbjct: 83 --ARATAGLGLRWHFIGQLQTNKASSVAEYADFVHSVDRIRLVAALSRSAVRYDKELTCL 140
Query: 124 IQVNTGY------EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
+QV+ G + G P+Q + LN+ GLM + P P P F L
Sbjct: 141 VQVDLGNAEPMDDNAARGGAFPDQVPELADAIAAAPGLNLGGLMAVAPLGAEPGPAFERL 200
Query: 178 SEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A + T +S GM+ D A+A+GAT VRIGS I G R
Sbjct: 201 HTLAMRLRTTHPSATMISAGMSGDLGEAVAAGATHVRIGSAILGIR 246
>gi|322513925|ref|ZP_08067002.1| YggS family pyridoxal phosphate enzyme [Actinobacillus ureae ATCC
25976]
gi|322120260|gb|EFX92213.1| YggS family pyridoxal phosphate enzyme [Actinobacillus ureae ATCC
25976]
Length = 231
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 101/206 (49%), Gaps = 8/206 (3%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ +V L+AVSK + I A+S GQ F EN +QE +K ++ +++ FIG LQS
Sbjct: 23 RTNVRLLAVSKTKPVEAIEEAISAGQTAFGENYVQEGVEKIAYFAQQPNLEWHFIGPLQS 82
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK + FD I+TV R K A L+ + + L V IQ+N E KSGI P +
Sbjct: 83 NKTRLVAENFDWIQTVDRLKIAERLNAQCPENKAPLNVLIQINISDEASKSGIQPEGLDE 142
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSMGMTRD 196
Q L + GLM IP + L ++ A + LSMGM+ D
Sbjct: 143 LAKAISQLPNLRLRGLMAIPKPESEAEQQKIALHKMQQLFDRLQAEFEGIDTLSMGMSDD 202
Query: 197 FELAIASGATSVRIGSGIFGERPCQT 222
+ AI G+T VRIG+ IFG R T
Sbjct: 203 IQSAIECGSTMVRIGTAIFGARDYST 228
>gi|297624874|ref|YP_003706308.1| alanine racemase domain-containing protein [Truepera radiovictrix
DSM 17093]
gi|297166054|gb|ADI15765.1| alanine racemase domain protein [Truepera radiovictrix DSM 17093]
Length = 237
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 109/216 (50%), Gaps = 6/216 (2%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKLQEAKK 63
+ L K ++E + A R +V+LVAV+K ++++ L G + E+++QE +
Sbjct: 2 SALDAVKTRLERACARAGRDPRAVTLVAVTKGRSAEEVEAQLLGRGHLTLGESRVQEWRS 61
Query: 64 KWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + W + FIG+LQ+NKV + + SR +L + + RF V
Sbjct: 62 KAARLAERGWAPEWHFIGNLQTNKVKYCAPFYALHSLNSRRLAEALEAFGARRAHRFR-V 120
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+++VN E K G+ + + V + L V GLM I P +P +P F L E
Sbjct: 121 FVEVNVAGEASKQGVPLAEAEALVRYAQGLPHLEVLGLMTIAPYSHDPEAVRPVFRALRE 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ L LSMGM+ DFE+AI GAT VR+GS +F
Sbjct: 181 LRDRLALEALSMGMSGDFEVAIEEGATHVRVGSALF 216
>gi|165975509|ref|YP_001651102.1| hypothetical protein APJL_0052 [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|307249250|ref|ZP_07531247.1| hypothetical protein appser4_670 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|165875610|gb|ABY68658.1| hypothetical protein APJL_0052 [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|306858774|gb|EFM90833.1| hypothetical protein appser4_670 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 231
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 99/202 (49%), Gaps = 8/202 (3%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+D+V L+AVSK + I A+ GQ F EN +QE +K ++ +++ FIG LQS
Sbjct: 23 RDNVRLLAVSKTKPVEAIEEAIVAGQTAFGENYVQEGIEKIAYFAQQPNLEWHFIGPLQS 82
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK + FD I+TV R K A L+ + K L V IQ+N E KSGI P +
Sbjct: 83 NKTRLVAENFDWIQTVDRLKIAERLNAQRPKNKAPLNVLIQINISDEASKSGIQPEGLDE 142
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSMGMTRD 196
Q L + GLM IP + L ++ A + LSMGM+ D
Sbjct: 143 LAKAISQLPNLRLRGLMAIPKPESEVEQQKIALRKMQQLFDRLQAEFEGIDTLSMGMSDD 202
Query: 197 FELAIASGATSVRIGSGIFGER 218
AI G+T VRIG+ IFG R
Sbjct: 203 MAAAIECGSTMVRIGTAIFGAR 224
>gi|293391891|ref|ZP_06636225.1| succinyl-diaminopimelate desuccinylase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290952425|gb|EFE02544.1| succinyl-diaminopimelate desuccinylase [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 231
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 107/225 (47%), Gaps = 13/225 (5%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
LQ+ +QKI + +V+L+AVSK + I A GQ F EN +QE +K
Sbjct: 7 NLQLVQQKITQICQMVGSSPSAVTLLAVSKTKPVEDILTAYEAGQEAFGENYVQEGVEK- 65
Query: 66 IPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
I ++ ++ L FIG LQSNK + FD ++ + R K A L+ + L V
Sbjct: 66 IQFCQQHNINLEWHFIGPLQSNKTRLVAEYFDWMQALDRAKIADRLNEQRSPHKAPLNVL 125
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---------- 173
IQVN E KSGI P + D L + GLM IP +
Sbjct: 126 IQVNISNEASKSGIQPCEILDLAKHLENLPHLCLRGLMAIPEPTNDVTRQEQVFYQMRVL 185
Query: 174 FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L + ++ LSMGMT D ++AI G+T VR+G+ IFG+R
Sbjct: 186 FEQLQQALPNAQIDTLSMGMTDDMQMAIKCGSTMVRVGTAIFGKR 230
>gi|297583957|ref|YP_003699737.1| alanine racemase domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297142414|gb|ADH99171.1| alanine racemase domain protein [Bacillus selenitireducens MLS10]
Length = 226
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 121/231 (52%), Gaps = 23/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+++ +L K KI+ + + R + V ++AV+K V +++ A+ G EN++++
Sbjct: 2 VTVSKQLADVKAKIKKACERSGRQEQDVHIIAVTKYVTTERAIEAVDAGVRHVGENRVED 61
Query: 61 AKKKW--IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
++K+ I R EW FIGSLQS KV ++++ FD + ++ R A L+ + +
Sbjct: 62 YREKYDEIGTRAEW----HFIGSLQSKKVKKMINEFDYLHSLDRLSLAK--ELDKRAEGK 115
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+ ++QVN E K+GI P++ F+ Q L V GLM + P N ++ S
Sbjct: 116 KVKCFVQVNVSGESSKAGISPSEVLPFIKELEQYQALEVSGLMTMAPLTENESELRHVFS 175
Query: 179 EIAR-------------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
E+ + CK +LSMGM+ D+E+A+ GAT VRIGS + G
Sbjct: 176 ELRKLRDLIQAESLPHAPCK--ELSMGMSNDYEIAVEEGATFVRIGSALVG 224
>gi|145637682|ref|ZP_01793336.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
PittHH]
gi|145269142|gb|EDK09091.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
PittHH]
Length = 237
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 112/233 (48%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEYFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYL 176
L V IQ+N E KSGI P + L + GLM IP + + F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIAEQETVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|77361519|ref|YP_341094.1| PLP-binding domain-containing protein [Pseudoalteromonas
haloplanktis TAC125]
gi|76876430|emb|CAI87652.1| conserved protein of unknown function ; putative enzyme with
PLP-binding domain [Pseudoalteromonas haloplanktis
TAC125]
Length = 237
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 112/227 (49%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+++ +L +I +A A+R + ++L+AVSK S I A GQ F E+ +QE
Sbjct: 11 VTIAERLTSAYARIAVAAKNAQRNSNEITLLAVSKTKPSADIIAAYKHGQRQFGESYVQE 70
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L D+ FIG +QSNK + + + F +++V R K A L+ + L
Sbjct: 71 AVDKIAQLHAYSDIIWHFIGPIQSNKSALVAANFAWVQSVDRIKIAKRLNSQRPADKAAL 130
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQVN E KSG N+ + Q QL + GLM IP + ++
Sbjct: 131 NVLIQVNISNEEAKSGCQLNEVAELASFINQCEQLTLRGLMAIPAKSDDITTQTQYFKQL 190
Query: 181 AREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ C ++ LSMGM+ D E AI++G+T VRIG+ IFG R
Sbjct: 191 -QTCFDKLQTQYPQVDTLSMGMSNDVEAAISAGSTMVRIGTDIFGTR 236
>gi|256819743|ref|YP_003141022.1| alanine racemase domain-containing protein [Capnocytophaga ochracea
DSM 7271]
gi|256581326|gb|ACU92461.1| alanine racemase domain protein [Capnocytophaga ochracea DSM 7271]
Length = 241
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 15/225 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ + +Q+I N+ R + V L+ +K V ++I+VAL+ G + AENK+QE K+K+
Sbjct: 8 IALVQQRIANTCERVGRKPEEVKLLLATKTVTPERIKVALNAGYTLIAENKVQELKEKYE 67
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRFLPVYI 124
L+ FIG LQ+NK+ +I+ ++V +E+V R A L + + + L ++I
Sbjct: 68 ALKDTPHTN-HFIGHLQTNKIKDILR-YEVSCVESVDRLDLAQKLHNRLESEGKELDIFI 125
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAMGNPKPHFYLLSEIA 181
QVNT E K G P++ + V L+++GLM I + F LL +
Sbjct: 126 QVNTSNEESKFGADPSEVLNLVKQVATLPTLHIKGLMTIGLFSAETEKVRACFKLLKHLQ 185
Query: 182 RE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E +LSMGM+ D E AI GAT VR+G+ IFG+R
Sbjct: 186 QEIIALNLPNVDPRELSMGMSGDLETAIEEGATIVRVGTAIFGKR 230
>gi|37625084|gb|AAQ95748.1| conserved hypothetical protein [Aeromonas hydrophila]
Length = 233
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 113/223 (50%), Gaps = 12/223 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQV K++I +A A R D + L+AVSK + + A + GQ F E+ QEA K
Sbjct: 9 LQV-KERIVQAASRAGRRGDHIQLLAVSKTKPLEAVCEAYAAGQRRFGESYAQEAATKID 67
Query: 67 PLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
LR++ D++ FIG LQSNK + FD +++V REK L+ + L V
Sbjct: 68 TLREQGTCTDIEWHFIGPLQSNKSKLVAERFDWVQSVDREKLIERLNNQRPAGLAPLNVC 127
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK-------PHFYL 176
+Q+N E KSG + L + +L + GLM IP + L
Sbjct: 128 LQINISGESSKSGTSEQEIFRLAELVSRCERLRLRGLMAIPEHTSDEAVLAAQMVRMQTL 187
Query: 177 LSEIAREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E+AR+ + LSMGMT D ELAI G+T VR+G+ IFG R
Sbjct: 188 FTELARQYPGVDTLSMGMTEDLELAIGHGSTMVRVGTAIFGAR 230
>gi|76808945|ref|YP_334717.1| hypothetical protein BURPS1710b_3346 [Burkholderia pseudomallei
1710b]
gi|76578398|gb|ABA47873.1| conserved hypothetical protein TIGR00044, putative [Burkholderia
pseudomallei 1710b]
Length = 305
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 112/227 (49%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +QE+
Sbjct: 77 LAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQESI 136
Query: 63 KK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K LR E ++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 137 DKISTLADLRAE--LEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLPP 194
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK----PH-- 173
L V +QVN E KSG+ P L + GLM IP +P+ PH
Sbjct: 195 LNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLRGLMAIPEPETDPEAKRAPHRA 254
Query: 174 FYLLSEIARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L E R L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 255 LHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGAR 301
>gi|160938829|ref|ZP_02086180.1| hypothetical protein CLOBOL_03723 [Clostridium bolteae ATCC
BAA-613]
gi|158437792|gb|EDP15552.1| hypothetical protein CLOBOL_03723 [Clostridium bolteae ATCC
BAA-613]
Length = 226
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 118/226 (52%), Gaps = 17/226 (7%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKK 63
+L+ ++ IE++ A R + V+L+AVSK + A G F ENK+QE KK
Sbjct: 5 QLEEVRKHIEDACRRAGRNPEEVTLIAVSKTKPVPMLMEAYDAGARDFGENKVQEILNKK 64
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
+P D++ IG LQ NKV +++ +I +V + A + + K + +
Sbjct: 65 PELP----EDIRWHMIGHLQRNKVHQVIDKAVLIHSVDSLRLAQQIEDDAAKLGLDVDIL 120
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEI 180
++VN E K G + + +D ++ + ++++GLM I P + NP+ + F L E
Sbjct: 121 LEVNVAREESKYGFLMEEVEDAIMQIKDFPHVHIKGLMTIAPFVDNPEENRGIFKKLFEF 180
Query: 181 ARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A + ++ LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 181 AVDIGGKNIDNVTMSVLSMGMTGDYEVAIEEGATMVRVGTGIFGSR 226
>gi|16766401|ref|NP_462016.1| hypothetical protein STM3100 [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|62181610|ref|YP_218027.1| hypothetical protein SC3040 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161616064|ref|YP_001590029.1| hypothetical protein SPAB_03865 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167990373|ref|ZP_02571473.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168236168|ref|ZP_02661226.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|168264454|ref|ZP_02686427.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168463713|ref|ZP_02697630.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168819870|ref|ZP_02831870.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194445431|ref|YP_002042359.1| alanine racemase family [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194734660|ref|YP_002116048.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197262943|ref|ZP_03163017.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|198244385|ref|YP_002217075.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200386504|ref|ZP_03213116.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205354023|ref|YP_002227824.1| hypothetical protein SG2994 [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|224584893|ref|YP_002638692.1| hypothetical protein SPC_3165 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238909898|ref|ZP_04653735.1| hypothetical protein SentesTe_02020 [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|16421653|gb|AAL21975.1| putative enzyme with a TIM-barrel fold [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|62129243|gb|AAX66946.1| putative enzyme with a TIM-barrel fold [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161365428|gb|ABX69196.1| hypothetical protein SPAB_03865 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194404094|gb|ACF64316.1| alanine racemase family [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194710162|gb|ACF89383.1| alanine racemase family [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195633383|gb|EDX51797.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197241198|gb|EDY23818.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197290700|gb|EDY30054.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197938901|gb|ACH76234.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199603602|gb|EDZ02147.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205273804|emb|CAR38799.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205331123|gb|EDZ17887.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205343423|gb|EDZ30187.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205347039|gb|EDZ33670.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|224469421|gb|ACN47251.1| hypothetical protein SPC_3165 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|261248231|emb|CBG26068.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267995265|gb|ACY90150.1| hypothetical protein STM14_3744 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301159655|emb|CBW19174.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312914122|dbj|BAJ38096.1| hypothetical protein STMDT12_C31530 [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320087532|emb|CBY97297.1| Proline synthetase co-transcribed bacterial homolog protein
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|321225773|gb|EFX50827.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322716093|gb|EFZ07664.1| UPF0001 protein yggS [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
gi|323131456|gb|ADX18886.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|326624847|gb|EGE31192.1| UPF0001 protein yggS [Salmonella enterica subsp. enterica serovar
Dublin str. 3246]
gi|326629136|gb|EGE35479.1| pyridoxal phosphate enzyme [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
gi|332989967|gb|AEF08950.1| hypothetical protein STMUK_3088 [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 234
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 110/231 (47%), Gaps = 18/231 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAYIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLR--KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP P+ + E
Sbjct: 123 LNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPA----PESDYVRQFE 178
Query: 180 IARECKLT------------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 179 VARQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|330810813|ref|YP_004355275.1| alanine racemase [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|327378921|gb|AEA70271.1| Putative alanine racemase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 273
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 109/224 (48%), Gaps = 11/224 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +Q+I ++ R SV L+ VSK D +R+A G + ENK+QEA++K
Sbjct: 31 NLAAVQQRISSACQRVGRDPASVRLLPVSKTFDEAHLRLAYVAGCRLLGENKVQEAQRKR 90
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ D+Q IG LQ+NKV ++ + + + A L + + R + V++Q
Sbjct: 91 EAMADLTDLQWSIIGHLQTNKVKQVARFASEFQALDSLRVAEALDRRLQVEGRRMDVFVQ 150
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIAR 182
VNT E+ K G+ P F+ L V GLM + + +P F L E+
Sbjct: 151 VNTSGEVSKYGLPPEAVAAFLRALPAFSTLRVRGLMTLALFSADVARVRPCFVRLRELRE 210
Query: 183 ECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L +LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 211 RLRQDAPVGIGLEELSMGMSGDFEIAIEEGATVVRVGQAIFGAR 254
>gi|40217453|emb|CAE46386.1| conserved hypothetical protein [uncultured archaeon]
gi|268323836|emb|CBH37424.1| conserved hypothetical protein containing N-terminal domain of
alanine racemase [uncultured archaeon]
Length = 224
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 113/211 (53%), Gaps = 14/211 (6%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+LA+ PK+ V L A +K +++I A+ G I EN +QEA++ + + + V+ F
Sbjct: 14 LLAELPKEVV-LEAAAKTRTTEEIMAAIEAGITIVGENYIQEAERAFKVIGRM--VKWHF 70
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ NKV + V LFD+IET+ A ++ K + +P+ I+VN+G E +K G++
Sbjct: 71 IGHLQRNKVKKAVDLFDLIETIDSFSIAEEINRVSSKIGKIMPILIEVNSGREPRKFGVL 130
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECK--------LT 187
P + V+ + +EGLM + P + + +F EI + K +
Sbjct: 131 PEDVDELVVKISALASVKIEGLMTMGPYEEDIEKSRLYFRETKEIFEQIKKSGIPAVDMR 190
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ + +AI GA VR+G GIFG R
Sbjct: 191 YLSMGMSDSYIIAIEEGANIVRVGIGIFGPR 221
>gi|78059216|gb|ABB17984.1| conserved hypothetical protein [Aggregatibacter aphrophilus]
Length = 234
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 102/208 (49%), Gaps = 13/208 (6%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL--RFIG 80
R + +V L+AVSK + I +A + GQV F EN +QE +K I ++ DV L FIG
Sbjct: 24 REQSAVKLLAVSKTKPVEDILIAHAAGQVAFGENYVQEGVEK-IQYCQQHDVSLEWHFIG 82
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
LQSNK + FD ++T+ R K A L+ + L V IQ+N E KSGI P+
Sbjct: 83 PLQSNKTRLVAEYFDWMQTLERAKIADRLNEQRSPYKAPLNVLIQINISQESSKSGIQPS 142
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP----------KPHFYLLSEIARECKLTKLS 190
L + GLM IP + K F L + ++ LS
Sbjct: 143 DMLPLAKHIENLPHLRLRGLMAIPEPTNDVAQQEQTFCQMKTLFEQLQQALPNAQIDTLS 202
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGMT D + AI G+T VRIG+ IFG R
Sbjct: 203 MGMTDDMQSAIKCGSTMVRIGTAIFGTR 230
>gi|207858361|ref|YP_002245012.1| hypothetical protein SEN2943 [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|206710164|emb|CAR34520.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
Length = 234
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 110/231 (47%), Gaps = 18/231 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAYIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLR--KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP P+ + E
Sbjct: 123 LNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPA----PESDYVRQFE 178
Query: 180 IARECKLT------------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 179 VARQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|262375723|ref|ZP_06068955.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
gi|262309326|gb|EEY90457.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
Length = 234
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 104/213 (48%), Gaps = 7/213 (3%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+IE + + A R D+V L+AVSK S + GQ F EN LQEA +K L KE
Sbjct: 19 QIETACVEAGREADAVQLLAVSKTQPSSVLAEMYQAGQRAFGENYLQEALEKITAL-KEL 77
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
+++ FIG +Q NK + F + V R A LS + L + IQVN +
Sbjct: 78 EIEWHFIGHVQRNKTKALAENFAWVHGVDRLIIAERLSNQRGDDQPALNICIQVNIDGQD 137
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP-----AMGNPKPHFYLLS-EIARECKL 186
K G P + D V Q + + GLM IP + G+ K F + + A
Sbjct: 138 TKDGCQPAEVADLVAQISQLPNVRLRGLMVIPAPNNPQSFGDAKVLFDAVKVQHAHPEDW 197
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
LSMGM+ D AIA+G+T VR+G+ +FG RP
Sbjct: 198 DTLSMGMSADMTEAIAAGSTMVRVGTALFGARP 230
>gi|153011453|ref|YP_001372667.1| alanine racemase domain-containing protein [Ochrobactrum anthropi
ATCC 49188]
gi|151563341|gb|ABS16838.1| alanine racemase domain protein [Ochrobactrum anthropi ATCC 49188]
Length = 276
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 113/228 (49%), Gaps = 13/228 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ + +I + + R + V L+ ++K V ++ +R A + G + F ENKLQEA+
Sbjct: 30 FASNLKEVRARIAAACHRSGRDPNDVRLLPITKTVPARILRHAYAAGILDFGENKLQEAR 89
Query: 63 KKWIPLRKEWDVQLRF--IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L D+ +R+ +G LQ+NKV +V L + + A L+ + + R L
Sbjct: 90 DKQAALN---DLPIRWSIVGHLQTNKVKYLVRLAWEFHALDSFRLAEELNRRLDAEDRDL 146
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
VY+QVNT E K G+ P+ FV + +L GLM + + F LL
Sbjct: 147 DVYVQVNTSDEESKYGLHPDDLMSFVARLSEFPRLKPRGLMTLAIFSSDTARVRACFRLL 206
Query: 178 SEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 207 RGLRDRVVDVHPHMNGLSMGMSGDFEVAIEEGATVVRVGQAIFGPRPT 254
>gi|330815598|ref|YP_004359303.1| Alanine racemase domain protein [Burkholderia gladioli BSR3]
gi|327367991|gb|AEA59347.1| Alanine racemase domain protein [Burkholderia gladioli BSR3]
Length = 236
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 109/233 (46%), Gaps = 15/233 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L L ++I+++A A R V L+AVSK ++ +R A + GQ F EN +QEA
Sbjct: 3 DLAASLASVHRRIDDAARSAGRAPGEVVLLAVSKTFPAEAVREAHAAGQRAFGENYVQEA 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K LR D FIG LQSNK + FD + +V R K A L+ +
Sbjct: 63 LDKIAALADLRASLD--WHFIGPLQSNKTRVVAEQFDWVHSVDRLKIAQRLAEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK----PHF 174
L V +QVN E KSG+ P + L + GLM IP G PH
Sbjct: 121 PLNVCVQVNVSGEDSKSGVAPAEAAALAREVAALPTLRLRGLMAIPEPAGELAAQRVPH- 179
Query: 175 YLLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
LL E+ A L LSMGM+ D E A+ GAT VR+G+ IFG R T
Sbjct: 180 RLLRELFDTLKAEGLALDTLSMGMSADLEAAVLEGATIVRVGTAIFGARDYGT 232
>gi|237729881|ref|ZP_04560362.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226908487|gb|EEH94405.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 234
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 112/227 (49%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I+ A++ GQ F EN +QE
Sbjct: 3 DIAHNLAHVRDKISAAATRCGRSSEEVTLLAVSKTKPASAIKEAIAAGQRAFGENYVQEG 62
Query: 62 --KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ + D+Q FIG LQSNK + FD T+ R + A+ LS + +
Sbjct: 63 VDKIRYFQEKGVNDLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIAARLSEQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + ++ + GLM IP + F + +
Sbjct: 123 LNVLIQINISDENSKSGISLAELDALAAEVAALPRITLRGLMAIPAPESDYVRQFEVAQQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A R + LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPGIDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGAR 229
>gi|170702350|ref|ZP_02893243.1| alanine racemase domain protein [Burkholderia ambifaria IOP40-10]
gi|170132735|gb|EDT01170.1| alanine racemase domain protein [Burkholderia ambifaria IOP40-10]
Length = 232
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 97/205 (47%), Gaps = 17/205 (8%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGS 81
+VSL+AVSK + +R A + GQ F EN +QE+ K L EW FIG
Sbjct: 28 TVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQESIDKIDALADLRTGLEW----HFIGP 83
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQSNK + FD + +V R K A L+ + L V +QVN E KSG+ P
Sbjct: 84 LQSNKTRPVAERFDWVHSVDRLKIAQRLAEQRPAHLPPLNVCVQVNISGEASKSGVAPAD 143
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPK----PHFYLLSEI----ARECKLTKLSMGM 193
+ L + GLM IP G+ PH L + A L LSMGM
Sbjct: 144 VAEVARAVAALPTLRLRGLMAIPEPAGDTDAQRAPHRALRALFDTLRADGLPLDTLSMGM 203
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D E A+ GAT VR+G+ +FG R
Sbjct: 204 SADLEAAVLEGATIVRVGTALFGAR 228
>gi|204928220|ref|ZP_03219420.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|204322542|gb|EDZ07739.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
Length = 234
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 110/231 (47%), Gaps = 18/231 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLR--KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP P+ + E
Sbjct: 123 LNVLIQINISDENSKSGIPLAELDELAAAVATMPRLRLRGLMAIPA----PESDYVRQFE 178
Query: 180 IARECKLT------------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 179 VARQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|110596798|ref|ZP_01385088.1| Protein of unknown function UPF0001 [Chlorobium ferrooxidans DSM
13031]
gi|110341485|gb|EAT59945.1| Protein of unknown function UPF0001 [Chlorobium ferrooxidans DSM
13031]
Length = 229
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ L+ +++I+ + I A R DSV L+AV+K + +++ AL GQ+ F E+ +QE
Sbjct: 3 SIAANLEAIREQIKAACIKAGRQPDSVRLIAVTKTKPAAQVKEALDAGQLEFGESYVQEF 62
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K P+ + + FIG LQSNKV I+ ++ + + TA LS + + +
Sbjct: 63 LEKSGDPILENSPIVWHFIGHLQSNKVRSIIDKVTLVHGIDKLSTAEELSKRAQQHNLQI 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLL-- 177
++VNT E K G+ P++ + + + GLM I P + + + F L
Sbjct: 123 DYLLEVNTSGESSKYGMPPDKLLSTAESLFKLPNITLRGLMTIASPDIESARREFRTLRL 182
Query: 178 -----SEIA-RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+IA KLT+LSMGM+ DFE AI GAT +R+GS IFG R
Sbjct: 183 LLESLKKIAPHPQKLTELSMGMSGDFEAAINEGATMIRVGSSIFGWR 229
>gi|167904160|ref|ZP_02491365.1| hypothetical protein BpseN_18061 [Burkholderia pseudomallei NCTC
13177]
Length = 232
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 111/228 (48%), Gaps = 13/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +QE+
Sbjct: 3 DLAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQES 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K LR E ++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 63 IDKISTLADLRAE--LEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK----PHF 174
L V +QVN E KSG+ P L + GLM IP +P+ PH
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLRGLMAIPEPETDPEAKRAPHR 180
Query: 175 YLLSEI----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + A L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 181 ALHALFQQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGAR 228
>gi|115350675|ref|YP_772514.1| hypothetical protein Bamb_0621 [Burkholderia ambifaria AMMD]
gi|115280663|gb|ABI86180.1| Protein of unknown function UPF0001 [Burkholderia ambifaria AMMD]
Length = 268
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 97/205 (47%), Gaps = 17/205 (8%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGS 81
+VSL+AVSK + +R A + GQ F EN +QE+ K L EW FIG
Sbjct: 64 TVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQESIDKIDALADLRTGLEW----HFIGP 119
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQSNK + FD + +V R K A L+ + L V +QVN E KSG+ P
Sbjct: 120 LQSNKTRPVAERFDWVHSVDRLKIAQRLAEQRPAHLPPLNVCVQVNISGEASKSGVAPAD 179
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPK----PHFYLLSEI----ARECKLTKLSMGM 193
+ L + GLM IP G+ PH L + A L LSMGM
Sbjct: 180 VAEVARAVAALPTLRLRGLMAIPEPAGDTDAQRAPHRALRALFDTLRADGLPLDTLSMGM 239
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D E A+ GAT VR+G+ +FG R
Sbjct: 240 SADLEAAVLEGATIVRVGTALFGAR 264
>gi|260581995|ref|ZP_05849790.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
NT127]
gi|260094885|gb|EEW78778.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
NT127]
Length = 237
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 113/233 (48%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ+ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQIAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQGINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIAERLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYL 176
L V IQ+N E KSG+ P + L + GLM IP + + F
Sbjct: 121 LNVLIQINISDEESKSGLQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|302338974|ref|YP_003804180.1| alanine racemase domain protein [Spirochaeta smaragdinae DSM 11293]
gi|301636159|gb|ADK81586.1| alanine racemase domain protein [Spirochaeta smaragdinae DSM 11293]
Length = 234
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 120/230 (52%), Gaps = 15/230 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M GN ++ + +I +A A R + L+AV+K + + A G +F EN++QE
Sbjct: 7 MIAGNIARI-QDEIAEAAHKAGRDPGDIQLMAVTKTHPFEDVLAAYQAGIRLFGENRVQE 65
Query: 61 AKKKW-IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A K+ +PL D++L IG LQSNKV +IV +E++ + TA L+ +
Sbjct: 66 AVGKYTLPL--PADMKLHMIGHLQSNKVKQIVPFVQCVESIDKVATAEELNKRAQVSGKS 123
Query: 120 LPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+ + +VNT E+ K+G + D + + L V GLM I P G+ + F
Sbjct: 124 IDIMFEVNTSGEVSKNGFSEYEELSDALGAVLELAALRVTGLMTIGPLGGDEGQIRNAFI 183
Query: 176 LLSEIAR-------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL ++ + +L +LSMGM+ DF +A+A GAT VR+G+ IFG R
Sbjct: 184 LLRSMSDRLSTEYPQVELRELSMGMSGDFPIAVAEGATIVRVGTAIFGRR 233
>gi|134280136|ref|ZP_01766847.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
305]
gi|134248143|gb|EBA48226.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
305]
Length = 232
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 111/228 (48%), Gaps = 13/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +QE+
Sbjct: 3 DLAARLASVHRRIDEAARAAGRAPGSVALLAVSKTFPADAVRAAYAAGQRAFGENYVQES 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K LR E ++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 63 IDKISTLADLRAE--LEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK----PHF 174
L V +QVN E KSG+ P L + GLM IP +P+ PH
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLRGLMAIPEPETDPEAKRAPHR 180
Query: 175 YLLSEI----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + A L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 181 ALHALFQQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGAR 228
>gi|253576142|ref|ZP_04853474.1| YggS family pyridoxal phosphate enzyme [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844485|gb|EES72501.1| YggS family pyridoxal phosphate enzyme [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 234
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 112/229 (48%), Gaps = 17/229 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+SL ++Q +++I+ + + R ++ V +VAV+K V + R L G V EN+ Q
Sbjct: 5 VSLKERIQHVEEQIKAACERSGRKREEVHVVAVTKYVSVEATREVLEAGIVHIGENRPQI 64
Query: 61 AKKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
A KW L + W FIG LQSNKV +++ F I ++ R A L
Sbjct: 65 AVPKWEALGGQGTW----HFIGHLQSNKVKDVIGRFQYIHSLDRLSLARELEKRASAMGT 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+ ++QVN E K GI P DF+ + V GLM + P + +P F
Sbjct: 121 SVTAFLQVNVSGEASKQGIAPEAAADFLKEIADLKHVRVVGLMTMAPIEEDAERTRPVFR 180
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L E+ + LT+LSMGM+ DFE+AI GAT VR+G+ + G
Sbjct: 181 KLRELRDQLNAQSVTAEPLTELSMGMSGDFEVAIEEGATWVRLGTLLVG 229
>gi|311693179|gb|ADP96052.1| alanine racemase domain protein [marine bacterium HP15]
Length = 206
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 107/207 (51%), Gaps = 13/207 (6%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
+ L+AVSK + +R A + GQ F EN LQEA +K L V FIG +QSNK
Sbjct: 1 MHLLAVSKTRPPEDLREAFAAGQRAFGENYLQEALEKMEALADLEGVDWHFIGPIQSNKT 60
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
++ S F + +V R K A LS + L + +QVN E KSG ++ D V
Sbjct: 61 RQMASAFSWVHSVDRLKIARRLSEQRDPALPPLNICLQVNINEEESKSGCTLDELPDLVA 120
Query: 148 LCRQKYQLNVEGLMCIP----PAMGNPKPHFYLLSEIARECK--------LTKLSMGMTR 195
+ +++ GLM IP P G + F L+ ++ + L LS+GM+
Sbjct: 121 EIGELPNISLRGLMAIPDPDQPEAGL-RASFRKLANTLKQLRSDHPDAGPLDTLSIGMSG 179
Query: 196 DFELAIASGATSVRIGSGIFGERPCQT 222
D E+AIA GAT VR+G+ +FG+RP ++
Sbjct: 180 DLEVAIAEGATWVRVGTALFGKRPVKS 206
>gi|316934046|ref|YP_004109028.1| alanine racemase domain-containing protein [Rhodopseudomonas
palustris DX-1]
gi|315601760|gb|ADU44295.1| alanine racemase domain protein [Rhodopseudomonas palustris DX-1]
Length = 259
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 104/207 (50%), Gaps = 19/207 (9%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW-----IPLRKEWDVQLRFIG 80
D V L+ V+K V + +R+A + G F ENKLQEA+ K +P+R W + IG
Sbjct: 45 DDVRLLPVTKTVPANVLRLAYAAGISEFGENKLQEARDKRAMLVDLPIR--WSI----IG 98
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
LQ+NKV +V + + A L+ + + R L V++QVNT E K G+ P+
Sbjct: 99 HLQTNKVKYLVRFASEFHALDSLRLAEELNRRLDAEGRDLDVFVQVNTSGEASKYGLAPD 158
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAREC-----KLTKLSMG 192
F + +L GLM + + + F LL ++ LT+LSMG
Sbjct: 159 DLVPFARRLSEYPRLKPRGLMTLAIFSADTERVRQCFRLLRDLRDRATSVHPDLTQLSMG 218
Query: 193 MTRDFELAIASGATSVRIGSGIFGERP 219
M+ DFE AI GAT VR+G IFG RP
Sbjct: 219 MSGDFEAAIEEGATVVRVGQAIFGARP 245
>gi|209694136|ref|YP_002262064.1| membrane protein, related to K+ transport [Aliivibrio salmonicida
LFI1238]
gi|208008087|emb|CAQ78228.1| membrane protein, related to K+ transport [Aliivibrio salmonicida
LFI1238]
Length = 255
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 106/217 (48%), Gaps = 11/217 (5%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+IENS R DSV L+AVSK + + A+ GQ F EN +QE K +K
Sbjct: 14 QIENSIQKCGRSPDSVQLLAVSKTKPIELLEQAIESGQHSFGENYVQEGVDKVHYFQKNH 73
Query: 73 ---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
+++ FIG +QSNK I FD + ++ R K A L+ + L V IQVN
Sbjct: 74 SNIELEWHFIGPIQSNKTRPIAEHFDWVHSIDRLKIAQRLNEQRPSDLGELNVLIQVNIS 133
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEI-----A 181
E KSG N+ L + GLM IP + N + F L+ I A
Sbjct: 134 SEDSKSGTTANEVMSLAAAIHAMPNLTLRGLMSIPANVSNYEEQLAAFKQLASIQNQLEA 193
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ LSMGM+ D + AI +G+T VRIG+ IFG R
Sbjct: 194 QYPQVDTLSMGMSGDIDAAIEAGSTMVRIGTAIFGAR 230
>gi|188534959|ref|YP_001908756.1| Conserved hypothetical protein YggS [Erwinia tasmaniensis Et1/99]
gi|188030001|emb|CAO97885.1| Conserved hypothetical protein YggS [Erwinia tasmaniensis Et1/99]
Length = 237
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 110/229 (48%), Gaps = 17/229 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +Q+I +A R ++L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 SIKHNLQQVQQRISAAAAQCGRCPQEITLLAVSKTKPASAIEEAVAAGQHCFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K I L D+ FIG LQSNK + FD TV R + A LS + L
Sbjct: 63 VDK-IQLLANPDLVWHFIGPLQSNKSRLVAENFDWCHTVDRLRIAERLSQQRPDPLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIM----PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
V IQ+N E KSGIM P + L R L + GLM IP + +
Sbjct: 122 VLIQINISAEQSKSGIMLAELPALAQQIAALPR----LKLRGLMAIPAPQDDYASQLAVC 177
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A K + LS+GM+ D + AIA+G+ VRIG+ IFG R
Sbjct: 178 QQMAAAFKQLQQQYPGVDTLSLGMSDDMDAAIAAGSNMVRIGTAIFGAR 226
>gi|145633703|ref|ZP_01789429.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
3655]
gi|145635487|ref|ZP_01791187.1| hypothetical protein CGSHiAA_03736 [Haemophilus influenzae PittAA]
gi|144985463|gb|EDJ92284.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
3655]
gi|145267252|gb|EDK07256.1| hypothetical protein CGSHiAA_03736 [Haemophilus influenzae PittAA]
Length = 237
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 112/233 (48%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEKNRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYL 176
L V IQ+N E KSGI P + L + GLM IP + + F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|324115034|gb|EGC08999.1| YggS family protein pyridoxal phosphate enzyme [Escherichia
fergusonii B253]
Length = 234
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 110/235 (46%), Gaps = 26/235 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRK------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K ++ EW FIG LQSNK + FD T+ R + A+ L+ +
Sbjct: 63 VDKIRHFQELGVTGLEW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPA 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V IQ+N E KSGI + D + L + GLM IP P+ +
Sbjct: 119 ELSPLNVLIQINISDENSKSGIQLAELDDLAAAVAELPHLRLRGLMAIPA----PESEYV 174
Query: 176 LLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 175 RQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|261342368|ref|ZP_05970226.1| pyridoxal phosphate enzyme, YggS family [Enterobacter cancerogenus
ATCC 35316]
gi|288315003|gb|EFC53941.1| pyridoxal phosphate enzyme, YggS family [Enterobacter cancerogenus
ATCC 35316]
Length = 233
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 110/227 (48%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + + A++ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCSRASEEITLLAVSKTKPASALAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K R + D+Q FIG LQSNK + FD T+ R K A+ L+ +
Sbjct: 63 VDKICHFRDQGQDDLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLKIAARLNDQRPADMAP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI ++ L + GLM IP + + F + +
Sbjct: 123 LNVLIQINISDENSKSGIALSELDALAAEVAALPHLTLRGLMAIPAPESSYERQFAVARQ 182
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFEALKARYTTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|92115169|ref|YP_575097.1| hypothetical protein Csal_3054 [Chromohalobacter salexigens DSM
3043]
gi|91798259|gb|ABE60398.1| Protein of unknown function UPF0001 [Chromohalobacter salexigens
DSM 3043]
Length = 235
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 105/222 (47%), Gaps = 10/222 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + ++ + A R S L+AVSK + +R A GQ F EN +QEA K
Sbjct: 10 LEDARNRLRTALTNAGRDPASAHLLAVSKTQPAASVRQAFEAGQREFGENYVQEALDKQA 69
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L + FIG LQSNK + F + T+ RE+ A L+ + L V +QV
Sbjct: 70 ALTDLDAIVWHFIGPLQSNKTRAVAEHFQWVHTLDRERIARRLAAQRPPALGPLDVCLQV 129
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PA--MGNPKPHFYLLSEI--- 180
N E KSG+ P + QL + GLM +P P+ + + F L E+
Sbjct: 130 NVSGEASKSGVAPADLPALADVVATLPQLRLRGLMTLPAPSDELATQRRPFAELRELLAS 189
Query: 181 ----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D E A+ GAT VR+G+ IFG+R
Sbjct: 190 LRQRHPQAPLDTLSMGMSGDLEAAVLEGATWVRLGTAIFGQR 231
>gi|16761875|ref|NP_457492.1| hypothetical protein STY3253 [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29143362|ref|NP_806704.1| hypothetical protein t3012 [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56415038|ref|YP_152113.1| hypothetical protein SPA2963 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161506348|ref|YP_001573460.1| hypothetical protein SARI_04545 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|168234349|ref|ZP_02659407.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|194469044|ref|ZP_03075028.1| alanine racemase family [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|197247706|ref|YP_002148014.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197363967|ref|YP_002143604.1| hypothetical protein SSPA2762 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|213051780|ref|ZP_03344658.1| hypothetical protein Salmoneentericaenterica_01903 [Salmonella
enterica subsp. enterica serovar Typhi str. E00-7866]
gi|213648206|ref|ZP_03378259.1| hypothetical protein SentesTy_13494 [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|289825940|ref|ZP_06545099.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
gi|25304591|pir||AD0878 conserved hypothetical protein STY3253 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16504177|emb|CAD02924.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138996|gb|AAO70564.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56129295|gb|AAV78801.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|160867695|gb|ABX24318.1| hypothetical protein SARI_04545 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|194455408|gb|EDX44247.1| alanine racemase family [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|197095444|emb|CAR61003.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197211409|gb|ACH48806.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|205331691|gb|EDZ18455.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
Length = 234
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 110/231 (47%), Gaps = 18/231 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLR--KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP P+ + E
Sbjct: 123 LNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPA----PESDYVRQFE 178
Query: 180 IARECKLT------------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 179 VARQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|149376943|ref|ZP_01894697.1| hypothetical protein MDG893_14515 [Marinobacter algicola DG893]
gi|149358720|gb|EDM47190.1| hypothetical protein MDG893_14515 [Marinobacter algicola DG893]
Length = 230
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 113/232 (48%), Gaps = 19/232 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + + ++I+ + + A R SV L+AVSK + ++R A S GQ F EN +QEA
Sbjct: 3 SIADNIGSVTRRIQKATLKAGRSAGSVYLLAVSKTRPADELRTAYSAGQRAFGENYVQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L++ ++ FIG +QSNK +I F +V R K A L+ + L
Sbjct: 63 LDKMEELKELDAIEWHFIGPIQSNKTRQIAEAFAWAHSVDRLKIAQRLNDQRPPTLPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-KPHFYLLSEI 180
+ +QVN E KSG + D + L++ GLM IP +P +P L S
Sbjct: 123 ICLQVNINNEESKSGCALEELIDMADAIEEMPNLSLRGLMAIP----DPDQPEAELRSSF 178
Query: 181 -------------AREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A C L LSMGM+ D E+AI GAT VR+G+ +FG R
Sbjct: 179 RKLANALKHMRQEASGCGPLDTLSMGMSGDLEMAIEEGATWVRVGTALFGPR 230
>gi|330502471|ref|YP_004379340.1| putative alanine racemase [Pseudomonas mendocina NK-01]
gi|328916757|gb|AEB57588.1| putative alanine racemase [Pseudomonas mendocina NK-01]
Length = 269
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 107/233 (45%), Gaps = 27/233 (11%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L +++IE + R +V L+ VSK +R+A + G + ENK+QEA K
Sbjct: 28 HNLAEVQRRIEAACQRVGRDPATVRLLPVSKTKPEASLRLAYAAGCRMLGENKVQEAHGK 87
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
W ++ D+Q IG LQ+NK + + + + A L + + R L V++
Sbjct: 88 WQSMQDLGDLQWSVIGHLQTNKAKLVARFATEFQALDSLRLAEALDRRLQVEGRALDVFV 147
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVNT E K G+ P FV L V GLM + A+ F +E R+C
Sbjct: 148 QVNTSGEASKYGLAPEDVAAFVQALPAFSALRVRGLMTL--AL------FSCEAERVRQC 199
Query: 185 -------------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+L LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 200 FVRLRELRDRLRQEAPSGIELEALSMGMSGDFEIAIEEGATVVRVGQAIFGAR 252
>gi|226952374|ref|ZP_03822838.1| alanine racemase domain-containing protein [Acinetobacter sp. ATCC
27244]
gi|226836826|gb|EEH69209.1| alanine racemase domain-containing protein [Acinetobacter sp. ATCC
27244]
Length = 230
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 109/212 (51%), Gaps = 7/212 (3%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+IE + +R SV L+AVSK S+ +R GQ F EN LQEA K I ++
Sbjct: 14 QIEQACQHVQRDLKSVQLLAVSKTHPSQSLRELYLAGQRSFGENYLQEALGK-IEELQDL 72
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
+++ FIG +Q NK + FD + V R A LS + + + L + +QVN +
Sbjct: 73 EIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQRLDGQQALNICLQVNIDGQD 132
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-----PAMGNPKPHFYLLSEI-ARECKL 186
K G PN+ + V + L + GLM IP A + K F + + A++
Sbjct: 133 SKDGCEPNEVAELVEQISRLPNLRLRGLMVIPAPDNVAAFADAKTLFDQVKSLHAQQQDW 192
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D + AIA+G+T VR+G+ +FG+R
Sbjct: 193 DTLSMGMSADLDAAIAAGSTMVRVGTALFGKR 224
>gi|208780013|ref|ZP_03247356.1| conserved hypothetical protein [Francisella novicida FTG]
gi|254372081|ref|ZP_04987574.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida GA99-3549]
gi|151569812|gb|EDN35466.1| conserved hypothetical protein [Francisella novicida GA99-3549]
gi|208744017|gb|EDZ90318.1| conserved hypothetical protein [Francisella novicida FTG]
Length = 227
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 105/205 (51%), Gaps = 16/205 (7%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSNKVS 88
L+AVSK KI GQ+ F EN QE ++K L W FIGSLQS K+
Sbjct: 24 LLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLPHLRW----HFIGSLQSRKIK 79
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV-- 146
IV I++V + + + ++ + V++Q+N +I KSG Q ++ +
Sbjct: 80 HIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVIQS 139
Query: 147 -ILCRQKYQLNVEGLMCIPPAMGNPKP------HFY--LLSEIARECKLTKLSMGMTRDF 197
I + L + GLMCIP P+ HF+ + S + + KL++LSMGM+ D+
Sbjct: 140 IIKAKSFINLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNSRLNDDLKLSRLSMGMSADY 199
Query: 198 ELAIASGATSVRIGSGIFGERPCQT 222
LAI G+T VR+GS +FG R +T
Sbjct: 200 RLAIQYGSTDVRVGSSLFGARLAKT 224
>gi|172059708|ref|YP_001807360.1| alanine racemase domain-containing protein [Burkholderia ambifaria
MC40-6]
gi|171992225|gb|ACB63144.1| alanine racemase domain protein [Burkholderia ambifaria MC40-6]
Length = 232
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 97/205 (47%), Gaps = 17/205 (8%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGS 81
+VSL+AVSK + +R A + GQ F EN +QE+ K L EW FIG
Sbjct: 28 TVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQESIDKIDALADLRTGLEW----HFIGP 83
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQSNK + FD + ++ R K A L+ + L V +QVN E KSG+ P
Sbjct: 84 LQSNKTRPVAERFDWVHSIDRLKIAQRLAEQRPAHLPPLNVCVQVNISGEASKSGVAPAD 143
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPK----PHFYLLSEI----ARECKLTKLSMGM 193
+ L + GLM IP G+ PH L + A L LSMGM
Sbjct: 144 VAEVARAVAALPTLRLRGLMAIPEPAGDTDAQRAPHRALRALFDTLRADGLPLDTLSMGM 203
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D E A+ GAT VR+G+ +FG R
Sbjct: 204 SADLEAAVLEGATIVRVGTALFGAR 228
>gi|329946945|ref|ZP_08294357.1| pyridoxal phosphate enzyme, YggS family [Actinomyces sp. oral taxon
170 str. F0386]
gi|328526756|gb|EGF53769.1| pyridoxal phosphate enzyme, YggS family [Actinomyces sp. oral taxon
170 str. F0386]
Length = 258
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 106/224 (47%), Gaps = 12/224 (5%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L +I+ +A A R + L+ VSK V +++R A + G ENK+QEA++K
Sbjct: 6 HNLAAVHARIDAAAERAGRDAAEIRLLPVSKTVPEERLRTAFAAGITQMGENKVQEAQRK 65
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
L + + IG LQ+NK + + D + + + A L + R L VY+
Sbjct: 66 SENL-ADLGISWSVIGHLQTNKAKNVAAFADEFQALDSLRLAGALDRRLQAAGRGLDVYV 124
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA 181
QVN+ E K G+ P+ DF+ L V GLM + + F ++ +
Sbjct: 125 QVNSSGEPSKFGLEPDDVADFLTALPAYSSLQVRGLMTLAANTSEEARVRECFRIMRRL- 183
Query: 182 RECKLTK-------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
R+ L LSMGM+ DFE AI G+T VR+G IFG R
Sbjct: 184 RDAALQAGTVGDGLLSMGMSGDFEAAIEGGSTCVRVGQAIFGAR 227
>gi|213850160|ref|ZP_03381058.1| hypothetical protein SentesT_00608 [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 237
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 110/231 (47%), Gaps = 18/231 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLR--KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP P+ + E
Sbjct: 123 LNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPA----PESDYVRQFE 178
Query: 180 IARECKLT------------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 179 VARQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|152981077|ref|YP_001353697.1| hypothetical protein mma_2007 [Janthinobacterium sp. Marseille]
gi|151281154|gb|ABR89564.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
Length = 267
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 100/210 (47%), Gaps = 15/210 (7%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R V L+ VSK +R+A + G ENK+QEA KW ++ D+ IG L
Sbjct: 43 RDPAEVRLLPVSKTKPEASLRLAYAAGCRTLGENKVQEAHHKWEAMQDLTDLHWSVIGHL 102
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q+NK + + + + A L + + R L V++QVNT E K G+ P
Sbjct: 103 QTNKAKLVARFATEFQALDSLRLAEALDRRLQIEGRSLDVFVQVNTSGEASKYGLAPADV 162
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPH-----FYLLSEIARECK--------LTKL 189
FV L V GLM + A+ + + F+LL + + + L +L
Sbjct: 163 AAFVQALPSYSALRVRGLMTL--ALFSSEEERVRQCFFLLRTLREQLRQSAPAGISLDEL 220
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERP 219
SMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 221 SMGMSGDFEIAIEEGATVVRVGQAIFGARP 250
>gi|240146310|ref|ZP_04744911.1| pyridoxal phosphate enzyme, YggS family [Roseburia intestinalis
L1-82]
gi|257201551|gb|EEU99835.1| pyridoxal phosphate enzyme, YggS family [Roseburia intestinalis
L1-82]
gi|291536184|emb|CBL09296.1| pyridoxal phosphate enzyme, YggS family [Roseburia intestinalis
M50/1]
gi|291538951|emb|CBL12062.1| pyridoxal phosphate enzyme, YggS family [Roseburia intestinalis
XB6B4]
Length = 231
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 122/232 (52%), Gaps = 23/232 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-- 60
L L ++ IE + A R +D V+L+AVSK + ++ F ENK+QE
Sbjct: 2 LKENLANVEKNIEQACKNAGRSRDEVTLIAVSKTKPVEMLQEIYDENIRDFGENKVQELC 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + +P D++ IG LQ NKV IV ++I +V + A ++++ KQ+ +
Sbjct: 62 SKMEQLP----SDIRWHMIGHLQRNKVKYIVGKVELIHSVDTYRLAEEINIQAKKQNVIV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN---VEGLMCIPPAMGNPKPHFYLL 177
P+ ++VN +E K GI +D ++L + +L ++GLM I P + NP+ +
Sbjct: 118 PILVEVNIAHEESKFGI---SAEDAILLVEEISKLENIRIKGLMTIAPYVENPEDNRLYF 174
Query: 178 SEIAR-ECKLTK----------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+I + +T LSMGMT D+ +AI GAT VR+G+GIFGER
Sbjct: 175 RKIKQLSVDITNKNIDNVFMEILSMGMTGDYMVAIEEGATMVRVGTGIFGER 226
>gi|27364896|ref|NP_760424.1| hypothetical protein VV1_1525 [Vibrio vulnificus CMCP6]
gi|27361041|gb|AAO09951.1| protein of unknown function [Vibrio vulnificus CMCP6]
Length = 236
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 110/228 (48%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +I +S R +DSV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITTQIHDSTQKCGRARDSVQLLAVSKTKPVEAILEAYHAGQRAFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K + E ++ FIG +QSNK + F + T+ R+K A L+ + +
Sbjct: 63 VEKVRFFAEQHPEKSIEWHFIGPIQSNKSRLVAEHFAWVHTIDRDKIAQRLNDQRPAELP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVNT E KSG+ + L L + GLM IP + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGVSGEEIFALAELISTLPNLTLRGLMSIPENVDDHASQLAAFQ 182
Query: 176 LLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+E + R + LSMGM+ D + AI SG+T VRIG+ IFG R
Sbjct: 183 PLAELQQRLVQRYPSVDTLSMGMSGDMDAAIESGSTMVRIGTAIFGHR 230
>gi|257457757|ref|ZP_05622918.1| pyridoxal phosphate enzyme, YggS family [Treponema vincentii ATCC
35580]
gi|257444807|gb|EEV19889.1| pyridoxal phosphate enzyme, YggS family [Treponema vincentii ATCC
35580]
Length = 240
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 104/217 (47%), Gaps = 12/217 (5%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I + A R V L+ +K V+ ++I A SCG + ENK+QE K+ L
Sbjct: 15 RINTACKKAGRDPKEVQLLLATKTVEPERILQAFSCGCTLIGENKVQELHDKYEALSAVP 74
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
FIG LQSNK+ E++ I+++ TA L + ++ R + + +QVNT E
Sbjct: 75 HTA-HFIGHLQSNKIKEVIRYVQCIQSIDNLDTAQKLEQRLAQEGRSIEILVQVNTSAEE 133
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLTK- 188
K G P ++ V LN+ G M I G + F L + ++ K
Sbjct: 134 SKFGCKPGDAENLVKAIAALPHLNIRGFMTIGLFSGEEDKVRACFRCLKHVQKQVAEMKL 193
Query: 189 -------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D E+AI G+T +RIG+ +FGER
Sbjct: 194 PNVSTDVLSMGMSGDLEIAIEEGSTMLRIGTAVFGER 230
>gi|189220120|ref|YP_001940760.1| enzyme with a TIM-barrel fold [Methylacidiphilum infernorum V4]
gi|189186978|gb|ACD84163.1| Predicted enzyme with a TIM-barrel fold [Methylacidiphilum
infernorum V4]
Length = 246
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 115/228 (50%), Gaps = 15/228 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ +L+ + KIE ++ + R ++LVAV+K + + L G V EN++QEA
Sbjct: 9 SIQERLEKLQYKIETASRKSGRNPKDITLVAVTKGFGPEVVETLLRMGIVHIGENRVQEA 68
Query: 62 --KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
KK+ I + W FIG LQ NK+ LFD I++V + A+LLS +
Sbjct: 69 RLKKEQIGEKGIW----HFIGHLQKNKIKLTSHLFDWIDSVDDLEDATLLSHFAQNMGKT 124
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
L + +QVN E K G P + + +L + GLM I PA +P +P F
Sbjct: 125 LKILVQVNVSGESTKFGTTPELAQSLCLAINALPRLEILGLMTIAPASPDPEKVRPVFSR 184
Query: 177 LSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + + + L LSMGM++DFE+AI GAT +RIG + G R
Sbjct: 185 LRMLRDKIESQSGIPLPVLSMGMSQDFEVAIEEGATMIRIGHFLLGPR 232
>gi|160899144|ref|YP_001564726.1| alanine racemase domain-containing protein [Delftia acidovorans
SPH-1]
gi|160364728|gb|ABX36341.1| alanine racemase domain protein [Delftia acidovorans SPH-1]
Length = 283
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 99/211 (46%), Gaps = 27/211 (12%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SV L+ VSK +R+A + G + ENK+QEA KW ++ D+Q IG LQ+NK
Sbjct: 60 SVRLLPVSKTKPESSLRLAHAAGCRMLGENKVQEAFGKWEAMQDLADLQWSVIGHLQTNK 119
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
+ + + + A L + + R L V++QVNT E K G+ P++ + FV
Sbjct: 120 ARLVARFASEFQALDNLRVAEALDRRLQAEGRALDVFVQVNTSGEASKYGLPPDEVQGFV 179
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC-------------------KLT 187
L V GLM + F +E R+C L
Sbjct: 180 QALPAFSALRVRGLMTL--------ALFSSEAERVRQCFVLLRRLRDQLRQSAPAGISLD 231
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 232 ELSMGMSGDFEIAIEEGATVVRVGQAIFGAR 262
>gi|264680539|ref|YP_003280449.1| hypothetical protein CtCNB1_4407 [Comamonas testosteroni CNB-2]
gi|262211055|gb|ACY35153.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 240
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 103/216 (47%), Gaps = 25/216 (11%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRF 78
P SV L+AVSK + +R A+ GQ F EN +QEA +K LR +Q
Sbjct: 25 PVTSVQLLAVSKTFGADAVREAVLAGQRSFGENYIQEAVEKIAALRAMQLAGGEALQWHC 84
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG +QSNK + FD +TV R K A LS + + L V IQVN KSG+M
Sbjct: 85 IGPIQSNKTRLVAENFDWAQTVDRLKIAERLSAQRPQGMARLNVCIQVNVDGGATKSGVM 144
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK------------- 185
Q + + L + G+M IP + P F + ++ K
Sbjct: 145 AEQALELAEAMVKLPNLQLRGIMSIP----DDAPDFEAQCAVHKKAKAVFESIKASGLAG 200
Query: 186 ---LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGMT D E A+A+G+T VR+GSG+FG+R
Sbjct: 201 LEHFDTLSMGMTGDLEAAVAAGSTMVRVGSGVFGKR 236
>gi|86144206|ref|ZP_01062542.1| hypothetical protein MED217_08185 [Leeuwenhoekiella blandensis
MED217]
gi|85829336|gb|EAQ47802.1| hypothetical protein MED217_08185 [Leeuwenhoekiella blandensis
MED217]
Length = 219
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 107/204 (52%), Gaps = 12/204 (5%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
P+D V+LVAVSK ++ ++ A GQ IF ENK+QE KW L K D+Q IG +Q
Sbjct: 16 PED-VTLVAVSKTKPNEDLQEAYDAGQRIFGENKIQEMTDKWKALPK--DIQWHMIGHVQ 72
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
+NKV + +I + R K ++ E K R + V +QV E K G+ P + K
Sbjct: 73 TNKVKYMAPYVSLIHSADRLKLFKEINKEAKKNERVIDVLLQVKIAEEDSKFGMPPEEAK 132
Query: 144 DFVILCRQKY--QLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK----LTKLSMGMT 194
F+ + +N+ GLM + + + K F L +I K + LSMGM+
Sbjct: 133 TFLEENKAANYPNVNIVGLMGMASFVDDETQIKREFAQLEKIYNTFKEQYAFSVLSMGMS 192
Query: 195 RDFELAIASGATSVRIGSGIFGER 218
D++LA+ G+T VR+GS IFG R
Sbjct: 193 GDYKLALEYGSTMVRVGSAIFGAR 216
>gi|332525179|ref|ZP_08401354.1| alanine racemase domain protein [Rubrivivax benzoatilyticus JA2]
gi|332108463|gb|EGJ09687.1| alanine racemase domain protein [Rubrivivax benzoatilyticus JA2]
Length = 230
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 113/233 (48%), Gaps = 21/233 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+G+ LQ K++I +A A R SV+L+AVSK + +R A GQ F EN +QEA
Sbjct: 3 SIGSNLQEVKRRIAAAANAAGRDAQSVTLLAVSKTFPASAVRAAHGEGQRAFGENYVQEA 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + LR E ++ IG LQSNK + FD + +V R K A L+ +
Sbjct: 63 LAKIAELVDLRPE--LEWHLIGPLQSNKTRPVAEAFDWVHSVDRLKIAQRLAEQRPAWLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE-----GLMCIPPAMGNPKPH 173
L + +QVN E KSG P +D L L E GLM IP +P
Sbjct: 121 PLQLCLQVNVSGEASKSGCAP---EDLPALAHAVAALPAERVRLRGLMAIPEPSEDPAAQ 177
Query: 174 FYLLSEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ + A L LSMGM+ D E A+A GAT VR+G+ IFG R
Sbjct: 178 RQPLARLRTMLAALNADGLALDTLSMGMSADLEAAVAEGATLVRVGTAIFGRR 230
>gi|113952848|ref|YP_729817.1| hypothetical protein sync_0599 [Synechococcus sp. CC9311]
gi|113880199|gb|ABI45157.1| conserved hypothetical protein TIGR00044 [Synechococcus sp. CC9311]
Length = 224
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 111/205 (54%), Gaps = 4/205 (1%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
AI A+ P DSV+L+AVSK + +R + GQV F E+++QEA K L ++
Sbjct: 17 AIHAECP-DSVNLLAVSKGHPAMAVRELAALGQVDFGESRVQEALPKQQDLEDLSSLRWH 75
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
FIG LQ+NKV +V F VI ++ + A S ++++R V+ QV + K G
Sbjct: 76 FIGRLQANKVRAVVRAFPVIHSIDSQGLAERTSRIAVEENRIPEVFFQVKLREDPAKGGW 135
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECKLTKLSMGMT 194
P+ ++ + L GLM + P + + + F+ +A E L++ SMGM+
Sbjct: 136 EPDALREVWPQLQSLPGLKPIGLMTMAPLGLGLEDRQSLFHDCRTLADELALSECSMGMS 195
Query: 195 RDFELAIASGATSVRIGSGIFGERP 219
D++ A +GAT VR+GSG+FG RP
Sbjct: 196 GDWKQAAKAGATWVRVGSGLFGPRP 220
>gi|254282330|ref|ZP_04957298.1| pyridoxal phosphate enzyme, YggS family [gamma proteobacterium
NOR51-B]
gi|219678533|gb|EED34882.1| pyridoxal phosphate enzyme, YggS family [gamma proteobacterium
NOR51-B]
Length = 229
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 103/202 (50%), Gaps = 15/202 (7%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---EWDVQLRFIGSLQS 84
V+L+AVSK + +R A G F EN LQ+A+ K LR EW FIG LQS
Sbjct: 31 VALLAVSKTKPAAMVRAAAEAGLHAFGENYLQDAETKIEELRDLGLEW----HFIGPLQS 86
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK I + FD + +V R K A LS + + L + +QVN E KSG++P Q D
Sbjct: 87 NKTRTIAANFDWVHSVDRLKIARRLSEQRPEALGPLNICLQVNISGEPSKSGVLPGQVPD 146
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNP----KPHF---YLLSEIAREC-KLTKLSMGMTRD 196
+ + GLM IP +P +P +LL ++ L LSMGM+ D
Sbjct: 147 LAATVASLPGITLRGLMAIPAPETDPVKQRQPFAALRHLLESLSDSLPHLDTLSMGMSSD 206
Query: 197 FELAIASGATSVRIGSGIFGER 218
E AIA GAT VR+G+ +FG R
Sbjct: 207 LEAAIAEGATIVRVGTDLFGAR 228
>gi|261823249|ref|YP_003261355.1| alanine racemase domain protein [Pectobacterium wasabiae WPP163]
gi|261607262|gb|ACX89748.1| alanine racemase domain protein [Pectobacterium wasabiae WPP163]
Length = 270
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 104/233 (44%), Gaps = 27/233 (11%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + +I + R +V L+ VSK ++R+A G I ENK+QEA +KW
Sbjct: 29 NLAAVQMRIAAACHRVGRDPATVRLLPVSKTKPENRLRMAYMAGCRIVGENKVQEANRKW 88
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++ D+Q IG LQ+NK + + + + L ++ + R L V++Q
Sbjct: 89 EAMQDLADLQWSVIGHLQTNKAKLVARFASEFQALDSLRLVEALDRRLLVEGRSLDVFVQ 148
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC- 184
VNT E K G+ P F+ L V GLM + F +E R+C
Sbjct: 149 VNTSGEASKYGLSPEDVPAFIQALPAFPALRVRGLMTL--------ALFSNEAERVRQCF 200
Query: 185 ------------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 201 IRLRNLRDRLQQNAPAGIGLDELSMGMSGDFEIAIEEGATVVRVGQAIFGARP 253
>gi|90580285|ref|ZP_01236092.1| Predicted enzyme with a TIM-barrel fold protein [Vibrio angustum
S14]
gi|90438587|gb|EAS63771.1| Predicted enzyme with a TIM-barrel fold protein [Vibrio angustum
S14]
Length = 236
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 99/207 (47%), Gaps = 11/207 (5%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL---RFI 79
R DSV L+AVSK + I A++ GQ F EN +QE K + L FI
Sbjct: 24 RAADSVQLLAVSKTKPVEAIEEAIAAGQYAFGENYVQEGVDKVNHFSSHPEKNLLVWHFI 83
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G +QSNK + FD + ++ R KTA LS + L V +QVN+ E KSGI
Sbjct: 84 GPIQSNKTRLVAEHFDWVHSIDRIKTAKRLSDQRPTSMAPLQVLLQVNSSAEATKSGITL 143
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA---RECKLT-----KLSM 191
+ + + GLM IP + F +A + KLT LSM
Sbjct: 144 AEVPALAAEIAAMPNIELRGLMSIPQPATDYDSQFATFKALAVTLEQLKLTYPNVDTLSM 203
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 204 GMSGDMEAAIAAGSTIVRIGTAIFGAR 230
>gi|145642000|ref|ZP_01797572.1| hypothetical protein CGSHiR3021_00702 [Haemophilus influenzae
R3021]
gi|148825633|ref|YP_001290386.1| hypothetical protein CGSHiEE_02835 [Haemophilus influenzae PittEE]
gi|145273271|gb|EDK13145.1| hypothetical protein CGSHiR3021_00702 [Haemophilus influenzae
22.4-21]
gi|148715793|gb|ABQ98003.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
PittEE]
gi|309972778|gb|ADO95979.1| Conserved hypothetical protein [Haemophilus influenzae R2846]
Length = 237
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 117/236 (49%), Gaps = 17/236 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEKNRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY---QLNVEGLMCIPPA---MGNPKPH 173
L V IQ+N E KSGI P ++ +IL + L + GLM IP + +
Sbjct: 121 LNVLIQINISDEESKSGIQP---EEMLILAKHIENLPHLCLRGLMAIPAPTDKIAEQEAV 177
Query: 174 FYLLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
F +S++ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 178 FRKMSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|262273740|ref|ZP_06051553.1| hypothetical protein VHA_000715 [Grimontia hollisae CIP 101886]
gi|262222155|gb|EEY73467.1| hypothetical protein VHA_000715 [Grimontia hollisae CIP 101886]
Length = 206
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 99/202 (49%), Gaps = 17/202 (8%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGSLQS 84
L+AVSK + I A+ GQ F EN +QE +K R EW FIG +QS
Sbjct: 3 LLAVSKTKPIEAIADAVEAGQTRFGENYVQEGVEKITHFRDIHPHLEW----HFIGPIQS 58
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK I FD + ++ R K A LS + L V IQVNT E KSGI + K
Sbjct: 59 NKTRLIAEHFDWVHSIDRSKVAHRLSEQRPADLPPLQVLIQVNTSGEASKSGIGFDDVKA 118
Query: 145 FVILCRQKYQLNVEGLMCIP-PAMGNPK--PHFYLLSEIARECKLTK-----LSMGMTRD 196
L + GLMCIP P + K F LS + K ++ LSMGM+ D
Sbjct: 119 LAEEIDALPNLTLRGLMCIPQPEEDHQKQLDAFAPLSALFETMKASRPDFDTLSMGMSGD 178
Query: 197 FELAIASGATSVRIGSGIFGER 218
+ AIASG+T VRIG+ IFG R
Sbjct: 179 MDAAIASGSTMVRIGTAIFGAR 200
>gi|154248852|ref|YP_001409677.1| alanine racemase domain-containing protein [Fervidobacterium
nodosum Rt17-B1]
gi|154152788|gb|ABS60020.1| alanine racemase domain protein [Fervidobacterium nodosum Rt17-B1]
Length = 235
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 110/214 (51%), Gaps = 8/214 (3%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
KI A+ R D + +VAV+K + I+ A G IF EN QE + K L
Sbjct: 21 NKISEHALKVGRKPDEIKIVAVTKTHPVEIIKTAYDVGLRIFGENYAQELRDKSEQLNFP 80
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
D++ +IG +Q+NK+ IV + +I +V R ++ K + + I+VN E
Sbjct: 81 -DIEWHYIGRIQTNKLKYIVPVAYLIHSVYRINEIEEINKIASKMGKIQKILIEVNVSGE 139
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG--NPKPHFYLLSEI-----AREC 184
K GI PN +D + + + V GLM + P + + + +F +L EI R
Sbjct: 140 ETKGGISPNNIEDLLKESEKFKNVQVIGLMTMAPFVEPESTRKYFRMLREIRDGISKRFP 199
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +LSMGM+ DFE+A+ G+T VRIG+ IFGER
Sbjct: 200 NLKELSMGMSNDFEVAVEEGSTIVRIGTAIFGER 233
>gi|325509536|gb|ADZ21172.1| enzyme with a TIM-barrel fold protein [Clostridium acetobutylicum
EA 2018]
Length = 221
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 112/229 (48%), Gaps = 22/229 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + LQ K+KI PK+ V+LVAVSK + I+ A G F ENK+QE
Sbjct: 1 MGITYNLQKVKEKI---------PKE-VTLVAVSKTKPIEDIKEAYEQGIRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ + DV+ IG LQ NKV IV +I ++ K + +
Sbjct: 51 LMSKYDEMNS--DVRWHLIGHLQVNKVKYIVGKVFLIHSLDSIKLLKEIEKRYTNEGLKA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPHFY---- 175
V I+VN G E K+GI+ + + C++ +NV+GLM IP N H++
Sbjct: 109 DVLIEVNIGREESKTGILEENLEALLDECQKCNSVNVKGLMAVIPVGDDNSNRHYFRKMK 168
Query: 176 -----LLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L + + + LSMGMT D+E+AIA GA VR+G GIFG+R
Sbjct: 169 AIFDDLKHKNIKNVDMKYLSMGMTHDYEIAIAEGANIVRVGEGIFGKRD 217
>gi|322613497|gb|EFY10438.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322621089|gb|EFY17947.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322624153|gb|EFY20987.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322628108|gb|EFY24897.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322633227|gb|EFY29969.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322636195|gb|EFY32903.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322639533|gb|EFY36221.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|322647534|gb|EFY44023.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322648718|gb|EFY45165.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|322653773|gb|EFY50099.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322657879|gb|EFY54147.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|322663982|gb|EFY60181.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322669007|gb|EFY65158.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322672999|gb|EFY69106.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|322678010|gb|EFY74073.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|322681186|gb|EFY77219.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|322687884|gb|EFY83851.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|323194920|gb|EFZ80107.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323199624|gb|EFZ84714.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323202629|gb|EFZ87669.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|323207884|gb|EFZ92830.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|323212564|gb|EFZ97381.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|323214953|gb|EFZ99701.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323222683|gb|EGA07048.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323225426|gb|EGA09658.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323230559|gb|EGA14677.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323235090|gb|EGA19176.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323239129|gb|EGA23179.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|323244513|gb|EGA28519.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323247128|gb|EGA31094.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323253389|gb|EGA37218.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323256304|gb|EGA40040.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323262520|gb|EGA46076.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323267384|gb|EGA50868.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323269212|gb|EGA52667.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
Length = 234
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 110/231 (47%), Gaps = 18/231 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLR--KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP P+ + E
Sbjct: 123 LNVLIQINISDENSKSGIPLAKLDELAAAVATLPRLRLRGLMAIPA----PESDYVRQFE 178
Query: 180 IARECKLT------------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 179 VARQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|312135160|ref|YP_004002498.1| alanine racemase domain-containing protein [Caldicellulosiruptor
owensensis OL]
gi|311775211|gb|ADQ04698.1| alanine racemase domain protein [Caldicellulosiruptor owensensis
OL]
Length = 238
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 108/220 (49%), Gaps = 16/220 (7%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK- 70
+IE + + + R VSL+ +K V+ I++A G IF EN++QE K+ L
Sbjct: 21 NRIEKACLRSGRNPSEVSLLGATKGVNVDTIKLANQLGLKIFGENRVQEFLPKFQVLPYL 80
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
EW FIG LQ+NK+ I +I ++ + L K + V I++N G
Sbjct: 81 EW----HFIGRLQTNKIKYIYDKVSLIHSIDSPQQIDELEKRCAKAGKACNVLIEINIGG 136
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEI------- 180
E K G+ + D + + ++G M IPP + K +F ++ EI
Sbjct: 137 EESKGGVSVEKVDDLIEKISNCSHIILKGFMTIPPIEDDDKKLRWYFRMMKEIFEKYKKL 196
Query: 181 -ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
K+ LSMGM+ DFE+AI GAT VRIG+ IFGERP
Sbjct: 197 NYNNVKIEVLSMGMSNDFEVAIEEGATLVRIGTKIFGERP 236
>gi|289209575|ref|YP_003461641.1| alanine racemase domain protein [Thioalkalivibrio sp. K90mix]
gi|288945206|gb|ADC72905.1| alanine racemase domain protein [Thioalkalivibrio sp. K90mix]
Length = 237
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 110/230 (47%), Gaps = 21/230 (9%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ + +++I ++ A R SV L+AVSK + IR + GQ F EN +QE K
Sbjct: 6 HAFRAVRERIVHACEQAGRDPGSVRLLAVSKTRTADDIRALHALGQTAFGENYVQELIDK 65
Query: 65 WI-------PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+ PL EW +IG+LQSNK + + T+ RE+ A LS + +
Sbjct: 66 FDALETGPNPLGLEW----HYIGALQSNKTRPVAERAHWVHTIDRERIARRLSEQRPEHL 121
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPH 173
L V +Q+N E QK+G+ P L + GLM +P A N +P
Sbjct: 122 PPLQVCLQINVSGESQKAGVPPEAAAALADTVANLPGLTLRGLMTLPAAESNRERQRRP- 180
Query: 174 FYLLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L ++ AR L LSMGM+ D E AI GA+ VRIG+ +FG R
Sbjct: 181 FARLRQLKDELNARGHGLDTLSMGMSGDLEAAILEGASLVRIGTALFGPR 230
>gi|227112106|ref|ZP_03825762.1| putative alanine racemase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 270
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 100/216 (46%), Gaps = 27/216 (12%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R +V L+ VSK ++R+A + G I ENK+QEA +KW ++ D+Q IG L
Sbjct: 46 RDPATVRLLPVSKTKPENRLRMAHAAGCRILGENKVQEAFRKWEAMQDLTDLQWSVIGHL 105
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q+NK + + + + A L + + R L V++QVNT E K G+ P
Sbjct: 106 QTNKAKLVARFATEFQALDSLRLAEALDRRLQIEGRSLDVFVQVNTSGEASKYGLSPEDV 165
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC------------------ 184
F+ L V GLM + F +E R+C
Sbjct: 166 PAFIQALPAFSALRVRGLMTL--------ALFSSDAERVRQCFIRLRQLRDRLQQNLPVG 217
Query: 185 -KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 218 IALDELSMGMSGDFEIAIEEGATVVRVGQAIFGARP 253
>gi|299821561|ref|ZP_07053449.1| YggS family pyridoxal phosphate enzyme [Listeria grayi DSM 20601]
gi|299817226|gb|EFI84462.1| YggS family pyridoxal phosphate enzyme [Listeria grayi DSM 20601]
Length = 230
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 116/227 (51%), Gaps = 20/227 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ KL KQ+IE + A R DSV L+AV+K VD+ KI G F EN+
Sbjct: 9 MNEQTKLTEVKQRIEAACKRADRSTDSVELIAVTKHVDAAKILDLHQLGLSQFGENRADV 68
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
KK L K+ + +IGSLQ+ KV +++ L + ++ RE L++E+ K++
Sbjct: 69 LVKKAAEL-KDHSIDWHYIGSLQTRKVRQVLPLISCLHSLDRES----LAVEIEKRAETE 123
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ-LNVEGLMCIPPAMGNP---KPHFY 175
+P ++QVN E K G P + FV R +Q + V GLM + P + + F
Sbjct: 124 IPCFLQVNITGEASKHGFSPEEALAFV--NRFDFQKIKVIGLMTMAPLTEDDAIIRQAFT 181
Query: 176 LLSEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
L+ + R+ KLSMGMT DFE+AI GAT +RIG +
Sbjct: 182 DLAALGQAIQKLAVRQAPCLKLSMGMTNDFEIAIEEGATHIRIGRAL 228
>gi|300778396|ref|ZP_07088254.1| YggS family pyridoxal phosphate enzyme [Chryseobacterium gleum ATCC
35910]
gi|300503906|gb|EFK35046.1| YggS family pyridoxal phosphate enzyme [Chryseobacterium gleum ATCC
35910]
Length = 219
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 108/213 (50%), Gaps = 11/213 (5%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
EN + + +V LVAVSK + ++ GQ +F ENK+QE +K PL + D+
Sbjct: 5 ENYNAIKNQLPSTVQLVAVSKTHPASAVQEVYDLGQKVFGENKVQELMEK-APLLPQ-DI 62
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
Q IG LQ+NKV I D I++V EK + ++ E K +R + V +QV E K
Sbjct: 63 QWHLIGHLQTNKVKYIAPFIDTIQSVDSEKVLAEINKEAGKNNRIIKVLLQVKIAAEESK 122
Query: 135 SGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNP---KPHFYLLSEIARECK---- 185
G+ ++ +D R NVE GLM + + + F +L + E
Sbjct: 123 FGLDISEARDLFGKYRDGQFPNVEITGLMGMATFTDDEQQVRNEFLILKGLFDEFNQLKA 182
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DF +AI GA SVR+GS IFG R
Sbjct: 183 LNTLSMGMSDDFPIAIECGANSVRVGSAIFGRR 215
>gi|182417963|ref|ZP_02949272.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237667346|ref|ZP_04527330.1| pyridoxal phosphate enzyme, YggS family [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182378134|gb|EDT75669.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237655694|gb|EEP53250.1| pyridoxal phosphate enzyme, YggS family [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 221
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 108/218 (49%), Gaps = 12/218 (5%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
EN L K D V L+AVSK + + A +CG F ENK+QE K+ K DV
Sbjct: 5 ENIEYLKKSIPDDVMLLAVSKTKPLEYLEEAYNCGMRDFGENKVQELVDKYENFHK--DV 62
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
+ IG LQ+NKV +V +I ++ +++ K IQ+N G E K
Sbjct: 63 RWHLIGHLQTNKVKYLVGKVFLIHSLDSVNLLNVIERVFEKADLTAETLIQINIGREDSK 122
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLSEIARECKLTK---- 188
+GI+ ++F+ + ++V+G+M I P + +F +I + K K
Sbjct: 123 TGILEEDLEEFLQEIEKCKHVSVKGIMVIIPQGDEESNRNYFRKTKQIFEDLKKRKFNNI 182
Query: 189 ----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
LSMGMT D+E AI G+T VRIG+GIFGER T
Sbjct: 183 NMQILSMGMTHDYETAIEEGSTLVRIGTGIFGERNYIT 220
>gi|119513658|ref|ZP_01632662.1| hypothetical protein N9414_22978 [Nodularia spumigena CCY9414]
gi|119461687|gb|EAW42720.1| hypothetical protein N9414_22978 [Nodularia spumigena CCY9414]
Length = 222
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 112/205 (54%), Gaps = 15/205 (7%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SV L+AVSK ++ IR A + G F EN++QEA K L+ D+ FIG LQSNK
Sbjct: 19 SVRLIAVSKTFPAEDIRAAYNAGIRDFGENRIQEAASKQAELQDLPDITWHFIGGLQSNK 78
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP-VYIQVNTGYEIQKSG-IMPNQTKD 144
+ + LFD I +V K A L+ ++ +Q P V +QV + KSG +P D
Sbjct: 79 AKKALELFDWIHSVDNLKLAQRLN-QLAQQLGVTPQVCLQVKILPDPNKSGWTVPELLAD 137
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEIARE--------CKLTKLSMGM 193
L + K L ++GLM IPP N F ++A+E K+ +LSMGM
Sbjct: 138 LDALNQCK-NLQIQGLMTIPPLGLNDTEIISVFNATHKLAQEIEEQNWSHLKMPELSMGM 196
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D++LA+ +GAT VR+G+ +FG+R
Sbjct: 197 SGDYQLAVQAGATMVRLGTILFGKR 221
>gi|78358629|ref|YP_390078.1| hypothetical protein Dde_3590 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78221034|gb|ABB40383.1| Protein of unknown function UPF0001 [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 248
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 122/239 (51%), Gaps = 26/239 (10%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR-VALSCGQVIFAENKLQE 60
+L +L+ +++++++ + R ++ V+LVAVSK + + +A G +F E+ +QE
Sbjct: 11 ALCGRLESVRRRLDDAVRASGRKQEDVTLVAVSKFHPAAAVEALARLAGHAVFGESYVQE 70
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL-------EM 113
A++K L + FIG +QS K ++ F ++ TV EK A L E
Sbjct: 71 AQEKQQAL-AGLALSWHFIGHVQSRKARDVAGRFALVHTVDSEKLACKLHQAVQPPDGEQ 129
Query: 114 IKQSRFL-PVYIQVNTGYEIQKSGIMPN----QTKDFVILCRQKYQLNVEGLMCIPPAM- 167
+ +R + V +QVN G E QKSG+ + D V L + GLMC+PP
Sbjct: 130 PEGARTVQDVLVQVNIGCEPQKSGVAAGDGLLRLADAVA---GMSGLRLRGLMCMPPLTC 186
Query: 168 --GNPKPHFYLLSEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+P+F L + +L LSMGM+ DFE A+A GAT VR+G+ IFGER
Sbjct: 187 QGEEARPYFAQLRGLRDSLEQRLGMRLPHLSMGMSHDFEQAVAEGATLVRVGTDIFGER 245
>gi|329118482|ref|ZP_08247187.1| alanine racemase domain protein [Neisseria bacilliformis ATCC
BAA-1200]
gi|327465423|gb|EGF11703.1| alanine racemase domain protein [Neisseria bacilliformis ATCC
BAA-1200]
Length = 238
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 96/204 (47%), Gaps = 8/204 (3%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
RP +SV LVAVSK + IR + G F EN +QE K L D+ IG +
Sbjct: 24 RPSESVRLVAVSKTFPADDIRAVYAAGARDFGENYIQEWLAKADDLADLPDIVWHIIGDV 83
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
QSNK + + T+ R KTA LS + + L V ++VN E K G+ P +
Sbjct: 84 QSNKTKAVAERAHWVHTIGRLKTAQRLSAQRPSEMPPLQVCVEVNIAGEAAKHGVPPAEA 143
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECKLTK-----LSMGMT 194
+ L V GLMC+ A + F + ++ + LSMGM+
Sbjct: 144 VALACEVAKLPNLRVRGLMCVAEAGADGAALAEQFGTMQKLLADLNAVGVAADVLSMGMS 203
Query: 195 RDFELAIASGATSVRIGSGIFGER 218
D+E A+A GAT VRIGS +FG R
Sbjct: 204 GDWETAVACGATHVRIGSAVFGRR 227
>gi|330794212|ref|XP_003285174.1| hypothetical protein DICPUDRAFT_28875 [Dictyostelium purpureum]
gi|325084895|gb|EGC38313.1| hypothetical protein DICPUDRAFT_28875 [Dictyostelium purpureum]
Length = 247
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 116/217 (53%), Gaps = 21/217 (9%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK-LQEAKKKWIPLRKEWDVQLRFIG 80
K + +V+LVAVSK + IR+ G F EN +QE +K L +++ +IG
Sbjct: 26 KFDRRNVALVAVSKTKPVEMIRILYEKGHRHFGENYVIQELIQKSEELASLNEIKWHYIG 85
Query: 81 SLQSNKVSEIVSLFD--VIETVSR----EKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
S+QSNK+ + S+ + V+ETV + +K A LE ++ L + IQVNT E K
Sbjct: 86 SIQSNKIKHLASVKNLYVVETVEKKEVLDKFAKSWDLEKSNNTK-LNIMIQVNTSQEESK 144
Query: 135 SGIMPNQTKDFVILCRQ----KYQLNVEGLMCI-PPAMGNPKPHFYLLSE----IARECK 185
SG PN + V C + K +LN GLM I P +P F L E IA+
Sbjct: 145 SGCHPNDCLELVKYCVEDEKCKEKLNFLGLMTIGSPNATEDQPDFKCLVECKNNIAKNTG 204
Query: 186 L----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +LSMGM+ DFE AI G+TSVR+GS IFG+R
Sbjct: 205 IPLESIQLSMGMSHDFEPAIEFGSTSVRVGSAIFGDR 241
>gi|307824924|ref|ZP_07655146.1| alanine racemase domain protein [Methylobacter tundripaludum SV96]
gi|307733971|gb|EFO04826.1| alanine racemase domain protein [Methylobacter tundripaludum SV96]
Length = 227
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 114/226 (50%), Gaps = 13/226 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L+ + +I ++ + R SV L+AVSK S+ I A GQ F EN LQEA
Sbjct: 3 TITERLKHIRSQISDAELACNRQPGSVLLLAVSKTKPSEDIAAAYQSGQRHFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L + + FIG +QSNK + + FD + +V K A LS + L
Sbjct: 63 LRKQQEL-GAYAITWHFIGPIQSNKTRPLATHFDWVHSVDSLKIAKRLSEQRPAHLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL---NVEGLMCIPPAMGN----PKPHF 174
+ +QVN E KSGI + LC Q +L + G+M IP + +P+
Sbjct: 122 ICLQVNISNEPSKSGIT---LAELPQLCEQIAKLPNLKLRGVMAIPAPQDDFEQQRQPYK 178
Query: 175 YLLSEIAR--ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +A+ + +L S GMT D + AIA G+T VRIG+ +FGER
Sbjct: 179 ALYQAVAKLGQAELDTFSFGMTGDLKAAIAEGSTIVRIGTALFGER 224
>gi|328675263|gb|AEB27938.1| hypothetical protein FN3523_0081 [Francisella cf. novicida 3523]
Length = 222
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 109/202 (53%), Gaps = 14/202 (6%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
L+AVSK KI S GQ+ F EN QE ++K +K ++ FIGSLQS K+
Sbjct: 24 LLAVSKYQSIDKIMYLASLGQLDFGENYFQELEQK---AQKLPGLRWHFIGSLQSRKIRH 80
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV--- 146
IV I++V + + ++ + ++ + V++Q+N +I KSG Q ++ V
Sbjct: 81 IVKYASSIQSVEKLEQLEKINKAAKQLAKKIEVFLQINIDDDINKSGFESTQLEEVVASI 140
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKP------HFY--LLSEIARECKLTKLSMGMTRDFE 198
+ + L V GLMCIP +P+ HF+ + S + + KL++LSMGM+ D+
Sbjct: 141 MKAKSFINLKVVGLMCIPSKSNSPEKSFAKMKHFFDTVNSRLNDDLKLSRLSMGMSADYT 200
Query: 199 LAIASGATSVRIGSGIFGERPC 220
LAI G+T VR+GS +FG R
Sbjct: 201 LAIKYGSTDVRVGSSLFGARAA 222
>gi|58271268|ref|XP_572790.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134114774|ref|XP_773685.1| hypothetical protein CNBH1400 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256313|gb|EAL19038.1| hypothetical protein CNBH1400 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229049|gb|AAW45483.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 259
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 130/249 (52%), Gaps = 41/249 (16%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + +Q I+N+A +P+ LVAVSK+ + I+ G F EN +QE
Sbjct: 17 LRENIAAVQQDIDNAAGTGAKPR----LVAVSKLKPASDIKALYDAGYRHFGENYIQEMV 72
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLL--SLEMIKQS 117
K L D++ FIGSLQSNK + + +LF ++ET+S K A LL SL +QS
Sbjct: 73 DKAAALPD--DIKWHFIGSLQSNKSKLAASVPNLF-ILETLSSTKVADLLQKSLPPSRQS 129
Query: 118 RFLPVYIQVNTGYEIQKSGI--MPNQTKDFVILCRQKYQ----LNVEGLMCIPPAMGN-- 169
+ L VY+QVNT E KSG+ +P+ + + V L + L + G+M I +
Sbjct: 130 K-LNVYLQVNTSGEDSKSGLSPLPSNSAELVDLAMHVIEKCPGLKLLGIMTIGSWDASHD 188
Query: 170 ---PKPHFYLL----SEIAR------------ECKLTKLSMGMTRDFELAIASGATSVRI 210
P P F L +E+A+ E +L +LSMGM+ DF AI G++SVR+
Sbjct: 189 PTKPNPDFECLKRTRTELAKALAENGVQGAPKEDEL-ELSMGMSADFVQAIKEGSSSVRV 247
Query: 211 GSGIFGERP 219
G+ IFGERP
Sbjct: 248 GTRIFGERP 256
>gi|167765522|ref|ZP_02437586.1| hypothetical protein CLOSS21_00016 [Clostridium sp. SS2/1]
gi|317498473|ref|ZP_07956767.1| alanine racemase domain-containing protein [Lachnospiraceae
bacterium 5_1_63FAA]
gi|167712707|gb|EDS23286.1| hypothetical protein CLOSS21_00016 [Clostridium sp. SS2/1]
gi|291558990|emb|CBL37790.1| pyridoxal phosphate enzyme, YggS family [butyrate-producing
bacterium SSC/2]
gi|316894166|gb|EFV16354.1| alanine racemase domain-containing protein [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 231
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 114/225 (50%), Gaps = 24/225 (10%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSK-----MVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
K+ +E + R V+++AVSK MV+ + L F ENK+QE + K+
Sbjct: 10 KKHVEEACKRVGRDPREVTVIAVSKTKPLEMVEELRKEKVLD-----FGENKVQEIRDKY 64
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RFLPVYI 124
+ W V+ IG LQ+NK+ IV +I +V K A + E K + +P+ I
Sbjct: 65 ANI--SWPVRWHLIGHLQTNKIKYIVDKVALIHSVDSIKLAQAIDKEAAKHDVKEVPILI 122
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA 181
QVN +E K G+ P D V + ++GLM I P + +P + +F + +++
Sbjct: 123 QVNFAHEDTKFGLNPEDVFDVVKEISALEHVKIKGLMQIAPFVDDPEDNRKYFRAMKQLS 182
Query: 182 RE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ LSMGMT D+E+A+ GAT VR+G+ IFGER
Sbjct: 183 VDINNKNFDNVDMSILSMGMTNDYEIAVEEGATMVRVGTAIFGER 227
>gi|258514369|ref|YP_003190591.1| alanine racemase domain-containing protein [Desulfotomaculum
acetoxidans DSM 771]
gi|257778074|gb|ACV61968.1| alanine racemase domain protein [Desulfotomaculum acetoxidans DSM
771]
Length = 225
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 119/228 (52%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + + + K++I +A + R D ++L+AV+K V I+ CG F EN++QE
Sbjct: 1 MNIRDNILLVKERIAAAACRSGRDPDDITLLAVTKNVSVDLIKQVYDCGFKEFGENRVQE 60
Query: 61 AKKK--WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+KK +P W IG LQ+NK+ I+ +I ++ A ++ + + Q+
Sbjct: 61 LQKKIALLPDDAVW----HMIGHLQTNKIKYIIDKIGLIHSLDSLSLAREINRQALLQNM 116
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+ V +++N E K GI ++ ++FV L L V GLM + P P +P F
Sbjct: 117 KVQVLLEINISGEQSKFGIPLSEAREFVKLVNCLPGLTVRGLMTMAPYTTYPEEVRPIFR 176
Query: 176 LLSEIAR-------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L +++ E + LSMGM+ DFE+A+ GAT VR+G+ +FG
Sbjct: 177 GLKDLSERISRESSEINMDVLSMGMSNDFEVAVEEGATIVRVGTALFG 224
>gi|163859053|ref|YP_001633351.1| hypothetical protein Bpet4732 [Bordetella petrii DSM 12804]
gi|163262781|emb|CAP45084.1| conserved hypothetical protein [Bordetella petrii]
Length = 246
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 115/229 (50%), Gaps = 13/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +Q+++ + A R +SV+L+ VSK + +R A + G F ENK QE
Sbjct: 12 SMAARVARVRQRMDAACARAGRAPESVTLLPVSKTFGPEAVREAAALGLRRFGENKTQEI 71
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K PL + D+Q IG LQ+NK + ++++ R A L + + R +
Sbjct: 72 RQKAGPL-ADLDIQWVMIGHLQTNKAKDAARHAAEVQSLDRLDLAYALQRRLQAEGRAID 130
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFV-ILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V +QV T E K G+ F+ I+ L V+GLM + + + F L
Sbjct: 131 VLVQVKTSPEPSKHGLDMQAVSSFLRIVAGDCPALRVQGLMTLAVQSDDTAAVRACFRAL 190
Query: 178 SEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + +L +LSMGM+ DFE+AI GAT VR+GS IFG R
Sbjct: 191 RELRDRLRDENIPDVRLDRLSMGMSGDFEIAIEEGATEVRVGSAIFGTR 239
>gi|149909466|ref|ZP_01898121.1| Predicted enzyme with a TIM-barrel fold [Moritella sp. PE36]
gi|149807576|gb|EDM67525.1| Predicted enzyme with a TIM-barrel fold [Moritella sp. PE36]
Length = 231
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 113/228 (49%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ +LQ +IEN+ + + + ++L+AVSK +++ + GQ F EN LQEA
Sbjct: 3 SISTRLQQVLTQIENATSASCKKRSEINLLAVSKTKPVEQVMAVYALGQRKFGENYLQEA 62
Query: 62 KKKWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K L+++ D++ FIG +QSNK I FD ++++ R K A L+ +
Sbjct: 63 VEKITHLQQDGNYDDIEWHFIGPIQSNKTRPIAEHFDWVQSIDRLKVAQRLNDQRPADMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
L V IQ+N E KSG Q L + G+M IP + K F
Sbjct: 123 KLNVCIQINISAEDSKSGADVQQAHLLAEQVANLPNLVLRGIMAIPEKTADIDKLKSQFS 182
Query: 176 LLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + + ++ LSMGMT D ELAIA G+ VR+G+ IFG R
Sbjct: 183 QLESLYLSLQHQYNQIDTLSMGMTNDMELAIAQGSNMVRVGTAIFGAR 230
>gi|78186366|ref|YP_374409.1| hypothetical protein Plut_0478 [Chlorobium luteolum DSM 273]
gi|78166268|gb|ABB23366.1| Protein of unknown function UPF0001 [Chlorobium luteolum DSM 273]
Length = 229
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 115/233 (49%), Gaps = 22/233 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
+ + L ++++ ++A A R +V L+AVSK + IR A GQ +F E+ LQE
Sbjct: 3 GIASNLLEIRRRVHDAARAAGRDPSAVRLIAVSKTKPAGMIREAFDAGQTLFGESYLQEF 62
Query: 61 ------AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
A+ + PL EW FIG LQSNKV ++ +I + + TA LS + +
Sbjct: 63 LEKCDDAELEGCPL--EW----HFIGHLQSNKVRSVIGRVSLIHGIDKVSTAEELSKQAV 116
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPH 173
K+ +++NT E K G+ P + K + + GLM I P +
Sbjct: 117 KRGINADYLLEINTSGEATKYGMQPLEAKAAAETLFGLPGITLRGLMTIASPDPSQAETE 176
Query: 174 F----YLLSEIAREC----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F LL I + +LT+LSMGM+ DFE AI GAT VR+G+ IFG R
Sbjct: 177 FRDLRLLLDAIKTQAPHPEELTELSMGMSGDFEAAIRQGATLVRVGTAIFGWR 229
>gi|310659185|ref|YP_003936906.1| hypothetical protein CLOST_1881 [Clostridium sticklandii DSM 519]
gi|308825963|emb|CBH22001.1| putative enzyme [Clostridium sticklandii]
Length = 231
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 104/207 (50%), Gaps = 18/207 (8%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE--WDVQLRFIGSLQ 83
D V+L+AVSK V ++I AL G ENK+QE +KK + K+ W IG+LQ
Sbjct: 26 DDVTLIAVSKTVGVEQINEALDSGIENLGENKVQEVEKKHPNVSKKAVW----HLIGTLQ 81
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
+NKV I+ D+I ++ R A + + + IQVN E K G++
Sbjct: 82 TNKVKYIIKTIDLIHSLDRMPLAKEIDKRAKENDLVMDCLIQVNISLEDSKHGLLAEDVM 141
Query: 144 DFVILCRQKYQ-LNVEGLMCIPPAMGNP---KPHFYLLSEIARE--------CKLTKLSM 191
FV Y + + GLM + P P +P+F L + E ++ LSM
Sbjct: 142 AFVKEVSLNYNNIRIVGLMGMAPFEAEPEQTRPYFKKLKSLFDELSSLALENVEMKYLSM 201
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GMT D+++AI G+ +R+G+GIFGER
Sbjct: 202 GMTNDYKIAIEEGSNMIRVGTGIFGER 228
>gi|71064845|ref|YP_263572.1| hypothetical protein Psyc_0268 [Psychrobacter arcticus 273-4]
gi|71037830|gb|AAZ18138.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
Length = 251
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 113/226 (50%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L Q K ++ + A R SV+L+AVSK ++ + GQ F EN LQEA
Sbjct: 25 NLTENWQQVKAQVAQACEQALRAPSSVTLLAVSKTKSAEMVATLARQGQYDFGENYLQEA 84
Query: 62 KKKWIPLRKEWDVQ---LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K L ++ + + +IGS+Q NK +I FD ++T+ R+ A L+ +
Sbjct: 85 IEKIQLLHEQVECEHIVWHYIGSIQRNKTRDIAEHFDWVQTLERDIIAKRLNNQRPDGML 144
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYL 176
L V IQ+N E KSG +P Q + +I + +L + GLM IP K L
Sbjct: 145 PLNVLIQINIDNEDTKSGCLPEQLPELIIDIKNYKRLQLRGLMIIPAKANTNAFKRTKQL 204
Query: 177 LSEIARE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+I R + LSMGM+ D AIA+G+T VR+G+ IFG R
Sbjct: 205 FDDIKRTHPELSQWDTLSMGMSDDMTDAIANGSTMVRVGTAIFGAR 250
>gi|254246274|ref|ZP_04939595.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
gi|124871050|gb|EAY62766.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
Length = 239
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 97/205 (47%), Gaps = 17/205 (8%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGS 81
+VSL+AVSK + +R A + GQ F EN +QE+ K L EW FIG
Sbjct: 35 TVSLLAVSKTFPADDVRAAHAAGQHAFGENYVQESIDKIDALADLRASLEW----HFIGP 90
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQSNK + FD + +V R K A LS + L V +QVN E KSG+ P
Sbjct: 91 LQSNKTRPVAERFDWVHSVDRLKIAQRLSEQRPAHLPPLNVCVQVNISGEASKSGVAPAD 150
Query: 142 TKDFVILCRQKYQLNVEGLMCIP-PAMGNP---KPHFYLLSEI----ARECKLTKLSMGM 193
+ L + GLM IP PA PH L + A L LSMGM
Sbjct: 151 VAEVARAVAALPSLRLRGLMAIPEPADDTDAQRAPHRALRALFDTLRADGLPLDTLSMGM 210
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D + A+ GAT VR+G+ IFG R
Sbjct: 211 SADLDAAVLEGATIVRVGTAIFGAR 235
>gi|83589709|ref|YP_429718.1| hypothetical protein Moth_0858 [Moorella thermoacetica ATCC 39073]
gi|83572623|gb|ABC19175.1| Protein of unknown function UPF0001 [Moorella thermoacetica ATCC
39073]
Length = 236
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 109/210 (51%), Gaps = 15/210 (7%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
P+D ++LVAV+K V ++IR A++CG EN++QE K + V IG LQ
Sbjct: 26 PED-ITLVAVTKTVPVERIREAVACGLKDLGENRVQELLSKQPHVEG---VNWHLIGHLQ 81
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NKV ++ +I +V + A ++ R + + ++VN E K G++P+
Sbjct: 82 RNKVRQVWDRVCLIHSVDSLELAREINKRATAAGRRVDILLEVNIAGEESKFGLVPDAVI 141
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK--------LTKLSMG 192
V L++ GLM + P + +P +P F L+ + RE + + LSMG
Sbjct: 142 PLVREIAGWPGLHICGLMTVAPLVADPEEVRPVFLRLAALRREVEALRLPGVDMAYLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGERPCQT 222
MT DFE+AI +GA VRIGS IFG R QT
Sbjct: 202 MTNDFEVAIEAGANMVRIGSAIFGSRDYQT 231
>gi|170732052|ref|YP_001763999.1| alanine racemase domain-containing protein [Burkholderia
cenocepacia MC0-3]
gi|169815294|gb|ACA89877.1| alanine racemase domain protein [Burkholderia cenocepacia MC0-3]
Length = 232
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 97/205 (47%), Gaps = 17/205 (8%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGS 81
+VSL+AVSK + +R A + GQ F EN +QE+ K L EW FIG
Sbjct: 28 TVSLLAVSKTFPADDVRAAHAAGQHAFGENYVQESIDKIDALADLRASLEW----HFIGP 83
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQSNK + FD + +V R K A LS + L V +QVN E KSG+ P
Sbjct: 84 LQSNKTRPVAERFDWVHSVDRLKIAQRLSEQRPAHLPPLNVCVQVNISGEASKSGVAPAD 143
Query: 142 TKDFVILCRQKYQLNVEGLMCIP-PAMGNP---KPHFYLLSEI----ARECKLTKLSMGM 193
+ L + GLM IP PA PH L + A L LSMGM
Sbjct: 144 VAEVARAVAALPSLRLRGLMAIPEPADDTDAQRAPHRALRALFDTLRADGLPLDTLSMGM 203
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D + A+ GAT VR+G+ IFG R
Sbjct: 204 SADLDAAVLEGATIVRVGTAIFGAR 228
>gi|239940566|ref|ZP_04692503.1| hypothetical protein SrosN15_06183 [Streptomyces roseosporus NRRL
15998]
gi|239987050|ref|ZP_04707714.1| hypothetical protein SrosN1_07062 [Streptomyces roseosporus NRRL
11379]
gi|291444001|ref|ZP_06583391.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291346948|gb|EFE73852.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 239
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I ++ A R ++ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAQVEERIASACAAAGRKREEVTLIVVTKTYPASDVRILHQLGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + F+G LQ+NKV + S DV+++V R K + LS ++ R L
Sbjct: 68 PKATAC-ADLSLTWHFVGQLQTNKVRSVTSYADVVQSVDRAKLVTALSAAAVRGERELGC 126
Query: 123 YIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPHF 174
IQV +G ++ G+ P+ ++ L ++GLM + P G + F
Sbjct: 127 LIQVALDAESGERGERGGVAPDGVEELAAAIDSAPGLRLDGLMTVAPLAGEYAGRQRAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L EI+ + +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 DRLMEISSRLRAGHPAANMVSAGMSGDLEDAVAAGATHVRVGTAVLGVRP 236
>gi|311278132|ref|YP_003940363.1| alanine racemase domain-containing protein [Enterobacter cloacae
SCF1]
gi|308747327|gb|ADO47079.1| alanine racemase domain protein [Enterobacter cloacae SCF1]
Length = 239
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 106/227 (46%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + A++ GQ F EN +QE
Sbjct: 8 DIAHNLAQVRDKISAAAAQCGRAPEEVTLLAVSKTKPVSAVEEAIAAGQRAFGENYVQEG 67
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K ++ +Q FIG LQSNK + FD TV R + AS LS +
Sbjct: 68 VEKIRHFQQAGATGLQWHFIGPLQSNKSRLVAEHFDWCHTVDRLRIASRLSEQRPADMAP 127
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQVN E KSGI P + L + GLM IP F +
Sbjct: 128 LNVLIQVNISDEDSKSGIPPEAVDELAAEVAALPGLVLRGLMAIPAPESEYVRQFAVAQR 187
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ A+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 188 MAVAFGRLKAQYATVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 234
>gi|149192339|ref|ZP_01870544.1| FkuA [Vibrio shilonii AK1]
gi|148833817|gb|EDL50849.1| FkuA [Vibrio shilonii AK1]
Length = 210
Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 103/203 (50%), Gaps = 11/203 (5%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW---DVQLRFIGSLQ 83
V L+AVSK + I A GQ F EN +QE K + ++ D++ FIG +Q
Sbjct: 2 DVQLLAVSKTKPIEAILDACQAGQRRFGENYVQEGVSKVVHFNEQHGDIDIEWHFIGPIQ 61
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
SNK + FD + TV R K A L+ + + + + V IQVNT E KSG+ Q
Sbjct: 62 SNKTRPVAEHFDWVHTVDRAKIAQRLNDQRPQGMKPIQVLIQVNTSSEASKSGVDSEQVL 121
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEI-----ARECKLTKLSMGMTR 195
+ L L + G+M IP + + + F L+E+ + ++ LSMGM+
Sbjct: 122 ELAQLISSLPNLTLRGVMSIPENVSDYQSQLIAFKALAEVKNLLAEKHPQVDTLSMGMSG 181
Query: 196 DFELAIASGATSVRIGSGIFGER 218
D E AI +G+T VRIG+ IFG R
Sbjct: 182 DMEAAIEAGSTVVRIGTAIFGVR 204
>gi|254391600|ref|ZP_05006799.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294812127|ref|ZP_06770770.1| alanine racemase domain protein [Streptomyces clavuligerus ATCC
27064]
gi|326440716|ref|ZP_08215450.1| hypothetical protein SclaA2_06598 [Streptomyces clavuligerus ATCC
27064]
gi|197705286|gb|EDY51098.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294324726|gb|EFG06369.1| alanine racemase domain protein [Streptomyces clavuligerus ATCC
27064]
Length = 247
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 115/230 (50%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R ++ V+LV V+K + +R+ G AEN+ Q+A
Sbjct: 16 LAENLAKVEERIAAACAAAGRKREEVTLVVVTKTYPASDVRLLYELGVRNVAENRDQDAA 75
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + D+Q F+G LQ+NKV ++ DV+++V R K + LS ++ R +
Sbjct: 76 PKAA-ACADLDLQWHFVGQLQTNKVRSVLGYSDVVQSVDRMKLVTALSSAAVRAGREVGC 134
Query: 123 YIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM----GNPKPHF 174
IQV TG ++ G+ P T++ L +GLM + P + G + F
Sbjct: 135 LIQVALDAETGARGERGGVAPGGTEELATAIEGSAGLRFDGLMTVAPLVGPYAGRQRAAF 194
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L EI+ + ++ +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 195 DRLMEISADLRVGHPAANMVSAGMSTDLEEAVAAGATHVRVGTAVLGVRP 244
>gi|107021807|ref|YP_620134.1| hypothetical protein Bcen_0247 [Burkholderia cenocepacia AU 1054]
gi|116688754|ref|YP_834377.1| hypothetical protein Bcen2424_0731 [Burkholderia cenocepacia
HI2424]
gi|105891996|gb|ABF75161.1| Protein of unknown function UPF0001 [Burkholderia cenocepacia AU
1054]
gi|116646843|gb|ABK07484.1| Protein of unknown function UPF0001 [Burkholderia cenocepacia
HI2424]
Length = 239
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 97/205 (47%), Gaps = 17/205 (8%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGS 81
+VSL+AVSK + +R A + GQ F EN +QE+ K L EW FIG
Sbjct: 35 AVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQESIDKIDALADLRASLEW----HFIGP 90
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQSNK + FD + +V R K A LS + L V +QVN E KSG+ P
Sbjct: 91 LQSNKTRPVAERFDWVHSVDRLKIAQRLSEQRPAHLPPLNVCVQVNISGEASKSGVAPAD 150
Query: 142 TKDFVILCRQKYQLNVEGLMCIP-PAMGNP---KPHFYLLSEI----ARECKLTKLSMGM 193
+ L + GLM IP PA PH L + A L LSMGM
Sbjct: 151 VAEVARAVAALPSLRLRGLMAIPEPADDTDAQRAPHRALRALFDTLRADGLPLDTLSMGM 210
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D + A+ GAT VR+G+ IFG R
Sbjct: 211 SADLDAAVLEGATIVRVGTAIFGAR 235
>gi|29346742|ref|NP_810245.1| hypothetical protein BT_1332 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29338639|gb|AAO76439.1| putative racemase [Bacteroides thetaiotaomicron VPI-5482]
Length = 224
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 113/218 (51%), Gaps = 17/218 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+LA+ P+ V LVAVSK ++ I A GQ IF E+K+QE K+ L K D++ F
Sbjct: 10 VLAELPQ-GVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQEMTAKYETLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK+ ++ ++I + K + ++ + K R + IQ++ E K G
Sbjct: 67 IGHLQTNKIKYMIPYVEMIHGIDTYKLLAEVNKQAAKAGRIVNCLIQIHVAQEETKFGFS 126
Query: 139 PNQTKDFVILCRQK--YQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECK-------- 185
P + KD + K + + GLM + + + F LL+ + +E K
Sbjct: 127 PEECKDMLHAGEWKELSHIRICGLMGMASNTDDVEQINREFCLLNRLFQEIKANWFADSD 186
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+LSMGM+ D+ AIA+G+T VR+GS IFGER T
Sbjct: 187 TFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGERNYNT 224
>gi|240948416|ref|ZP_04752794.1| hypothetical protein AM305_01454 [Actinobacillus minor NM305]
gi|240297242|gb|EER47800.1| hypothetical protein AM305_01454 [Actinobacillus minor NM305]
Length = 230
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 103/202 (50%), Gaps = 8/202 (3%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ + L+AVSK + I A+ GQ F EN +QE +K ++ +++ FIG LQS
Sbjct: 23 RSDIRLLAVSKTKPVQAIEEAIQAGQKAFGENYVQEGVEKINYFKENKEIEWHFIGPLQS 82
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK + FD I+TV R K A L+ + + L V IQ+N E KSGI P + +
Sbjct: 83 NKTRLVAEHFDWIQTVDRLKIAERLNEQRPEGKAPLNVLIQINISDESSKSGIAPEEMLE 142
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIARECK-----LTKLSMGMTRD 196
L ++GLM IP +P+ F + ++ + + LSMGM+ D
Sbjct: 143 LAHKIASLPNLRLKGLMAIPKPESDPEQQKIAFRKMEQLFHRLQQAFSGIDTLSMGMSDD 202
Query: 197 FELAIASGATSVRIGSGIFGER 218
+ AI G+T VRIG+ IFG+R
Sbjct: 203 MQSAIECGSTMVRIGTAIFGKR 224
>gi|254368471|ref|ZP_04984488.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FSC022]
gi|157121365|gb|EDO65566.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FSC022]
Length = 222
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 104/205 (50%), Gaps = 16/205 (7%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSNK 86
V L+AVSK KI GQ+ F EN QE ++K L W FIGSLQS K
Sbjct: 22 VRLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLPHLRW----HFIGSLQSRK 77
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
+ IV I++V + + + ++ + V++Q+N +I KSG Q ++ V
Sbjct: 78 IKHIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVV 137
Query: 147 ---ILCRQKYQLNVEGLMCIPPAMGNPKP------HFY--LLSEIARECKLTKLSMGMTR 195
+ + L + GLMCIP P+ HF+ + S + + KL++LSMGM+
Sbjct: 138 ASIMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNSRLNDDLKLSRLSMGMSA 197
Query: 196 DFELAIASGATSVRIGSGIFGERPC 220
D+ LAI G+T VR+GS +FG R
Sbjct: 198 DYRLAIQYGSTDVRVGSSLFGARAT 222
>gi|170765703|ref|ZP_02900514.1| alanine racemase family [Escherichia albertii TW07627]
gi|170124849|gb|EDS93780.1| alanine racemase family [Escherichia albertii TW07627]
Length = 234
Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 113/232 (48%), Gaps = 20/232 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A+ R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISTAAMRCGRSPEEITLLAVSKTKPASAIAEAIDAGQREFGENYVQEG 62
Query: 62 KKKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K I +E V Q FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDK-IRHFQELGVEGLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELP 121
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQ+N E KSGI + + + +L + GLM IP P+ +
Sbjct: 122 PLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPA----PESEYVRQF 177
Query: 179 EIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 178 EVARQMAVAFAGPKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|285018925|ref|YP_003376636.1| alanine racemase [Xanthomonas albilineans GPE PC73]
gi|283474143|emb|CBA16644.1| putative alanine racemase protein [Xanthomonas albilineans]
Length = 229
Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 107/224 (47%), Gaps = 19/224 (8%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ + +E +A A RP L+AVSK + + + GQ F EN +QEA K
Sbjct: 6 LQQIRLDMERAADAAGRPP--AQLLAVSKTQTAAAVAALAAQGQRAFGENYVQEAADKVA 63
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L E ++ IG LQSNK +LFD +++V R K + L+ L V IQV
Sbjct: 64 AL-AEAGLEWHLIGHLQSNKAELAATLFDWVQSVDRPKLIAPLAKGRPSTRGPLNVLIQV 122
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH----------FYL 176
N E K G P+Q + I + L + GLM IP P P
Sbjct: 123 NIDDEASKHGCHPDQIEPLAIAIAAQPALALRGLMAIP----APWPEAERREAAFIRMRT 178
Query: 177 LSEIAREC--KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E R+ ++ LSMGM+ DF AIA+GAT VRIG+ +FG R
Sbjct: 179 LFEHLRDAYPRVDTLSMGMSGDFAQAIAAGATLVRIGTALFGAR 222
>gi|312899016|ref|ZP_07758403.1| pyridoxal phosphate enzyme, YggS family [Megasphaera
micronuciformis F0359]
gi|310619923|gb|EFQ03496.1| pyridoxal phosphate enzyme, YggS family [Megasphaera
micronuciformis F0359]
Length = 215
Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 104/205 (50%), Gaps = 15/205 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA--KKKWIPLRKEWDVQLRFIGSLQ 83
D+V+LVAV+K + + A SCG EN+++E K+K P K ++ IG LQ
Sbjct: 12 DTVTLVAVTKNHPVEDMIEAASCGVTDVGENRVKEGTDKQKAFPDNK---LKWHLIGHLQ 68
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
+NKV + V+ FD+I +V + + + E K + + +QVN E K+G +
Sbjct: 69 TNKVKQAVAHFDLIHSVDSQHLLAAIDKEAEKIGKVQDILLQVNVAREESKTGAAVEEFP 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIARECK-------LTKLSMGM 193
L ++ + V G MC+ P N +P F + + + K + LSMGM
Sbjct: 129 KLCCLAKEAQHVRVCGFMCMAPNFENVEETRPVFRIAKALYDDMKGKFPDGQVRYLSMGM 188
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
T DFE+AI GA VR+G+ IFG R
Sbjct: 189 THDFEIAIEEGANIVRVGTAIFGPR 213
>gi|260887799|ref|ZP_05899062.1| pyridoxal phosphate enzyme, YggS family [Selenomonas sputigena ATCC
35185]
gi|260862475|gb|EEX76975.1| pyridoxal phosphate enzyme, YggS family [Selenomonas sputigena ATCC
35185]
Length = 236
Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 102/207 (49%), Gaps = 17/207 (8%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE--WDVQLRFIGSL 82
K+ V LVAV+K ++R A++ G EN++QEA++K+ L + W IG L
Sbjct: 32 KEPVRLVAVTKNHGVAEMREAIAHGVTDIGENRIQEAREKFETLERTAVW----HLIGHL 87
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q NK V LFD+I +V + A L E K + V +QVN E KSGI
Sbjct: 88 QKNKAKYAVKLFDLIHSVDTLELAEALDKEAGKSGKRQDVLVQVNLAKEASKSGIYEEDL 147
Query: 143 KDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECK--------LTKLSM 191
+ + L + GLMCI P + +P F + EI + K + LSM
Sbjct: 148 QPLLEAVDALPHLRLCGLMCIAPNYDEVEETRPLFRRMYEIFQRTKEFPWKTANINYLSM 207
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GMT D+ +A+ GA VR+G+ IFG R
Sbjct: 208 GMTHDYRIAVEEGANIVRVGTAIFGPR 234
>gi|313207350|ref|YP_004046527.1| alanine racemase domain protein [Riemerella anatipestifer DSM
15868]
gi|312446666|gb|ADQ83021.1| alanine racemase domain protein [Riemerella anatipestifer DSM
15868]
gi|315023245|gb|EFT36255.1| hypothetical protein RAYM_08700 [Riemerella anatipestifer RA-YM]
Length = 218
Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 112/216 (51%), Gaps = 16/216 (7%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDV 74
S ++++ PK +V+LVAVSK + I+ + G +F ENK+QE AK +P D+
Sbjct: 8 SKLISQIPK-TVNLVAVSKTYPVEDIQKVYNLGHKVFGENKVQELVAKHTELP----SDI 62
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
Q IG LQ+NKV I I++V EK + + K R + + +QV E K
Sbjct: 63 QWHLIGHLQTNKVKYIAPFIHTIQSVDSEKLLQEIDKQAGKHKRLINILLQVKIAEEDTK 122
Query: 135 SGIMPNQTKDFVILCRQKYQLNV--EGLMCIPPAMGNP---KPHFYLLSE----IARECK 185
+G+ N+ K+ + +Q N+ +GLM + + + F L + ++ +
Sbjct: 123 TGLEVNEVKELCVKIKQGEFPNIKLQGLMGMATFTDDETQIRREFSFLKQLYDYLSDSHQ 182
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L LSMGM+ DF LAI GA S+R+GS IFG R Q
Sbjct: 183 LNTLSMGMSGDFPLAIECGANSIRVGSAIFGARNYQ 218
>gi|330838695|ref|YP_004413275.1| protein of unknown function UPF0001 [Selenomonas sputigena ATCC
35185]
gi|329746459|gb|AEB99815.1| protein of unknown function UPF0001 [Selenomonas sputigena ATCC
35185]
Length = 230
Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 102/207 (49%), Gaps = 17/207 (8%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE--WDVQLRFIGSL 82
K+ V LVAV+K ++R A++ G EN++QEA++K+ L + W IG L
Sbjct: 26 KEPVRLVAVTKNHGVAEMREAIAHGVTDIGENRIQEAREKFETLERTAVW----HLIGHL 81
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q NK V LFD+I +V + A L E K + V +QVN E KSGI
Sbjct: 82 QKNKAKYAVKLFDLIHSVDTLELAEALDKEAGKSGKRQDVLVQVNLAKEASKSGIYEEDL 141
Query: 143 KDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECK--------LTKLSM 191
+ + L + GLMCI P + +P F + EI + K + LSM
Sbjct: 142 QPLLEAVDALPHLRLCGLMCIAPNYDEVEETRPLFRRMYEIFQRTKEFPWKTANINYLSM 201
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GMT D+ +A+ GA VR+G+ IFG R
Sbjct: 202 GMTHDYRIAVEEGANIVRVGTAIFGPR 228
>gi|229593134|ref|YP_002875253.1| putative recemase [Pseudomonas fluorescens SBW25]
gi|229365000|emb|CAY53143.1| putative recemase [Pseudomonas fluorescens SBW25]
Length = 228
Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 104/223 (46%), Gaps = 8/223 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + + Q+I +A +R S+ L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIADNIGQVSQRIRAAADAVQRDASSIHLLAVSKTKPAPAVREAYAAGMRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + + FIG +QSNK I F + +V R K A LS + L
Sbjct: 63 LGKQAEL-TDLPLSWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPADLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ IQVN E KSG P D +L + GLM IP + +
Sbjct: 122 ICIQVNVSGEASKSGCTPADLPDLANAISALPRLKLRGLMAIPEPTED-RAAQDAAFAAV 180
Query: 182 RECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 181 RDLQNSLNLPLDTLSMGMSHDLESAIAQGATWVRIGTALFGAR 223
>gi|269798488|ref|YP_003312388.1| alanine racemase domain protein [Veillonella parvula DSM 2008]
gi|269095117|gb|ACZ25108.1| alanine racemase domain protein [Veillonella parvula DSM 2008]
Length = 228
Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 109/222 (49%), Gaps = 12/222 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +Q++ ++ R D+ LVAV+K + G EN++QEAK+K +
Sbjct: 6 LHAIQQRMADAMARVGRV-DTALLVAVTKNHPVSAVEEVARLGVTHVGENRVQEAKEKQL 64
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
K + IG LQ NKV + V +FD+I +V K ++ K + V +QV
Sbjct: 65 TY-KGPQLTWHLIGHLQVNKVRQAVPMFDLIHSVDSRKLLDVIEKVAAKHDKMQDVLLQV 123
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF----YLLSE 179
N E K+G+ + + + + V GLMC+ P +P +P F L +
Sbjct: 124 NVAREASKTGMTVEEFPEIRDYAKTLPHVRVRGLMCMAPFFDDPQEARPIFRVANALFED 183
Query: 180 IAR---ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ R E ++ LSMGMT DFE+A+ GA VR+G+ IFGER
Sbjct: 184 MKRYFEEGQIQYLSMGMTHDFEVALEEGANIVRVGTAIFGER 225
>gi|319761216|ref|YP_004125153.1| alanine racemase domain protein [Alicycliphilus denitrificans BC]
gi|317115777|gb|ADU98265.1| alanine racemase domain protein [Alicycliphilus denitrificans BC]
Length = 240
Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 110/236 (46%), Gaps = 23/236 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ ++I + A RP SV+L+AVSK ++ + A GQ F EN +QEA
Sbjct: 3 TIDRNLQRVHERIAQACAAAGRPPGSVALLAVSKTFGAESVHAAALAGQRAFGENYIQEA 62
Query: 62 KKKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K LR Q IG +QSNK + FD +TV R K A LS +
Sbjct: 63 VEKMAALRALAPALALQWHCIGPIQSNKTRLVAEHFDWAQTVDRLKIAQRLSEQRPAHLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V IQVN KSG+ P+ + +L + G+M IP + P F
Sbjct: 123 PLMVCIQVNVDGGATKSGVGPHDAAALAEAVARLPRLVLRGVMSIP----DDAPTFEAQR 178
Query: 176 LLSEIAREC-------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E A + LSMGMT D E A+A+G+T VR+GSG+FG R
Sbjct: 179 ALHERAAAVFHHIKAQGFEGLGQFDTLSMGMTGDLEAAVAAGSTMVRVGSGVFGAR 234
>gi|326389984|ref|ZP_08211547.1| alanine racemase domain protein [Thermoanaerobacter ethanolicus JW
200]
gi|325994044|gb|EGD52473.1| alanine racemase domain protein [Thermoanaerobacter ethanolicus JW
200]
Length = 202
Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 104/198 (52%), Gaps = 12/198 (6%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
+A +K + I+ A++CG ENK+QE +K+ L+ E V+ FIG LQ+NKV I
Sbjct: 1 MAATKTFGVETIKEAIACGITDIGENKVQELNEKYPYLKNE--VEFHFIGHLQTNKVKYI 58
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
+ +I ++ K A + ++S + +++N G E K GI P + +FV
Sbjct: 59 IDKVKLIHSLDSIKLAEEIDKRAKQKSLIIDCLVEINIGGEENKYGIPPEEMHNFVKEME 118
Query: 151 QKYQLNVEGLMCIPPAM--GNPKPHFYLLSEIARECKLTK--------LSMGMTRDFELA 200
+ + + GLM I P + +P+F + E+ E K K LSMGM+ D+ +A
Sbjct: 119 KYDNIRIRGLMTIAPYLPPEEVRPYFRKMKELFEELKEIKQHNVQVEFLSMGMSNDYWVA 178
Query: 201 IASGATSVRIGSGIFGER 218
+ GA VRIG+ IFG+R
Sbjct: 179 VEEGANIVRIGTSIFGQR 196
>gi|332535496|ref|ZP_08411274.1| hypothetical protein PH505_cw00020 [Pseudoalteromonas haloplanktis
ANT/505]
gi|332035073|gb|EGI71589.1| hypothetical protein PH505_cw00020 [Pseudoalteromonas haloplanktis
ANT/505]
Length = 237
Score = 105 bits (261), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+++ +L +I ++A +R + V+L+AVSK S+ I A GQ F E+ +QE
Sbjct: 11 VTIAERLTSAYARIADAAKNTQRNTNEVTLLAVSKTKPSEDIIAAYEHGQREFGESYVQE 70
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L+ D+ FIG +QSNK + + + FD +++V R K A L + L
Sbjct: 71 AIDKIAQLQSYSDIIWHFIGPIQSNKSALVAANFDWVQSVDRIKIAKRLDSQRPDDKPPL 130
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ IQVN E KSG ++ + Q L + GLM IP ++
Sbjct: 131 NILIQVNISNEEAKSGCRRDEIDELADYINQCEHLTLRGLMAIPAKSDKLDTQIQSFEQL 190
Query: 181 AREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ C ++ LSMGM+ D E AI++G+T VRIG+ IFG R
Sbjct: 191 -QTCFDKLKTQYPQVDTLSMGMSNDVEAAISAGSTMVRIGTDIFGTR 236
>gi|146309164|ref|YP_001189629.1| alanine racemase domain-containing protein [Pseudomonas mendocina
ymp]
gi|145577365|gb|ABP86897.1| alanine racemase domain protein [Pseudomonas mendocina ymp]
Length = 230
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/213 (37%), Positives = 105/213 (49%), Gaps = 10/213 (4%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I +A ++R + L+AVSK + IR A + G F EN LQEA +K L
Sbjct: 14 RIREAAQASQRNFADIGLLAVSKTKPADAIREAHAAGLRDFGENYLQEALEKQAALS--- 70
Query: 73 DVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
D+ L FIG +QSNK I FD + +V R K A LS + L + +QVN
Sbjct: 71 DLPLIWHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSDQRPAHLAPLNICLQVNVSG 130
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPH--FYLLSEIARE--CK 185
E KSG P + + L + GLM IP P H F L ++ + +
Sbjct: 131 EDSKSGCSPEELPELAQAIAALPNLKLRGLMAIPEPTDDIAAQHAAFARLRQLRDDLGLQ 190
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 191 LDTLSMGMSHDLEAAIAEGATWVRIGTALFGAR 223
>gi|15644477|ref|NP_229529.1| hypothetical protein TM1731 [Thermotoga maritima MSB8]
gi|4982308|gb|AAD36796.1|AE001812_6 conserved hypothetical protein [Thermotoga maritima MSB8]
Length = 229
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 116/226 (51%), Gaps = 12/226 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L L+ +++N+A+ A R V LV SK +++ + G F EN+ Q+
Sbjct: 1 MGLKENLERVLNRMKNAALRANRDPSEVRLVVASKYASVQQMEELVFLGIREFGENRAQD 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK + + + FIG +Q+NKV IV ++I +V RE+ + K +
Sbjct: 61 LVKKSEYFKGK-PIIWHFIGRIQTNKVKYIVPRCELIHSVWREEELKEIEKRAEKLGKIQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
+ ++VN E K+G++ + + F+ LC++ + V G M + P +G+P+ F L
Sbjct: 120 KILLEVNVFKEETKAGLLVEEVEGFLKLCQEFPHVEVLGFMTMAPYVGDPEEVRWGFRTL 179
Query: 178 SEIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ E KL +LSMGM+ DFE+AI GAT VRIGS IF
Sbjct: 180 RELRDELASRFNGNVKLKELSMGMSNDFEVAIEEGATMVRIGSAIF 225
>gi|261250164|ref|ZP_05942740.1| hypothetical protein VIA_000184 [Vibrio orientalis CIP 102891]
gi|260939280|gb|EEX95266.1| hypothetical protein VIA_000184 [Vibrio orientalis CIP 102891]
Length = 238
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 112/230 (48%), Gaps = 13/230 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE + R +++V L+AVSK ++ I A GQ+ F EN +QE
Sbjct: 3 SIQQNIEQITSQIEAAQQKCGRSRETVQLLAVSKTKPNEAILEAARAGQLAFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + E ++ FIG +QSNK + F + T+ R K A L+ + S
Sbjct: 63 ADKVAHFSEHHPELALEWHFIGPIQSNKSRHVAENFAWVHTIDRAKIAQRLNDQRPAGSA 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+ V +QVNT E KSG+ ++ + L L + GLM IP + + +
Sbjct: 123 PIQVLMQVNTSGEQSKSGLNDDEIFELAELISSLPNLTLRGLMSIPANVTDYASQLGAFT 182
Query: 179 EIAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A E K+ LSMGM+ D E A+ +G+T VRIG+ IFG R
Sbjct: 183 QLAELKDKLAQRYPEQKIDTLSMGMSGDMEAAVEAGSTMVRIGTAIFGAR 232
>gi|37681058|ref|NP_935667.1| TIM-barrel fold family protein [Vibrio vulnificus YJ016]
gi|37199808|dbj|BAC95638.1| predicted enzyme with a TIM-barrel fold [Vibrio vulnificus YJ016]
Length = 236
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 110/228 (48%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +I +S R +DSV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITTQIHDSTQKCGRARDSVQLLAVSKTKPVEAILEAYHAGQRAFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K + E ++ FIG +QSNK + F + T+ R+K A L+ + +
Sbjct: 63 VEKVRFFAEQHPEKSIEWHFIGPIQSNKSRLVAEHFAWVHTIDRDKIAQRLNDQRPAELP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVNT E KSG+ + L L + GLM IP + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGVSGEEIFALAELISTLPNLTLRGLMSIPENVDDHVSQLAAFQ 182
Query: 176 LLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+E + R + LSMGM+ D + AI SG+T VRIG+ IFG R
Sbjct: 183 PLAELQQRLLQRYPSVDTLSMGMSGDMDAAIESGSTMVRIGTAIFGHR 230
>gi|118496714|ref|YP_897764.1| hypothetical protein FTN_0099 [Francisella tularensis subsp.
novicida U112]
gi|194324022|ref|ZP_03057797.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida FTE]
gi|118422620|gb|ABK89010.1| conserved protein of unknown function [Francisella novicida U112]
gi|194321919|gb|EDX19402.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida FTE]
Length = 222
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 103/203 (50%), Gaps = 16/203 (7%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSNKVS 88
L+AVSK KI GQ+ F EN QE ++K L W FIGSLQS K+
Sbjct: 24 LLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLPHLRW----HFIGSLQSRKIK 79
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV-- 146
IV I++V + + + ++ + V++Q+N +I KSG Q ++ +
Sbjct: 80 HIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVIQS 139
Query: 147 -ILCRQKYQLNVEGLMCIPPAMGNPKP------HFY--LLSEIARECKLTKLSMGMTRDF 197
I + L + GLMCIP P+ HF+ + S + + KL++LSMGM+ D+
Sbjct: 140 IIKAKSFINLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNSRLNDDLKLSRLSMGMSADY 199
Query: 198 ELAIASGATSVRIGSGIFGERPC 220
LAI G+T VR+GS +FG R
Sbjct: 200 RLAIQYGSTDVRVGSSLFGARAT 222
>gi|20808029|ref|NP_623200.1| TIM-barrel fold family protein [Thermoanaerobacter tengcongensis
MB4]
gi|254478764|ref|ZP_05092132.1| conserved hypothetical protein TIGR00044 [Carboxydibrachium
pacificum DSM 12653]
gi|20516607|gb|AAM24804.1| predicted enzyme with a TIM-barrel fold [Thermoanaerobacter
tengcongensis MB4]
gi|214035276|gb|EEB75982.1| conserved hypothetical protein TIGR00044 [Carboxydibrachium
pacificum DSM 12653]
Length = 197
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 102/198 (51%), Gaps = 12/198 (6%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
+A +K I+ A+SCG EN++QE +K+ L+ + D FIG LQ+NKV I
Sbjct: 1 MAATKTFGVDAIKEAISCGITAIGENRVQELMEKYPHLKGQVD--FHFIGHLQTNKVKYI 58
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
+ ++ ++ REK A + ++ + I+VN G E K GI P + + V
Sbjct: 59 IDKVKLVHSLDREKLAEEIDKRAKQKGIIMDCLIEVNIGGEDTKFGISPEEMHNLVKKLE 118
Query: 151 QKYQLNVEGLMCIPPAM--GNPKPHFYLLSEI--------ARECKLTKLSMGMTRDFELA 200
+ + ++GLM I P + +P+F + E+ R + LSMGM+ D+ +A
Sbjct: 119 KYDNIKIKGLMTIAPYLPPEEVRPYFKRMRELFEDLKRINQRNVEAQYLSMGMSNDYWVA 178
Query: 201 IASGATSVRIGSGIFGER 218
+ GA VRIG+ IFGER
Sbjct: 179 VEEGANIVRIGTAIFGER 196
>gi|196230130|ref|ZP_03128993.1| alanine racemase domain protein [Chthoniobacter flavus Ellin428]
gi|196225727|gb|EDY20234.1| alanine racemase domain protein [Chthoniobacter flavus Ellin428]
Length = 243
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 18/230 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L + I +A A R V LVAV+K + AL+ GQ +F E+++QEA
Sbjct: 3 TIADNLAAVRAVISEAAARAGRNPADVELVAVTKTHPPDSVVEALAAGQYVFGESRVQEA 62
Query: 62 KKKWIPL---RKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQS 117
K K IPL R W FIG LQ NK+ + ++L F+++ V +TA + +
Sbjct: 63 KAK-IPLVSGRARW----HFIGHLQRNKIRQALALGFELLHGVDSLETAREVDRLTSETG 117
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHF 174
F V ++VN E K G P + ++ + +L +EGLM I P + + +F
Sbjct: 118 VFPRVLLEVNVAGESSKFGFSPAKLREQLEELLSLGRLQIEGLMTIAPFAPEAESSRKYF 177
Query: 175 YLLSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E+ + + L +LSMGM+ D+ +A+ GAT VR+G+ IFG R
Sbjct: 178 VALRELRDQLQTEFRLPLPRLSMGMSGDYAVAVEEGATLVRVGTAIFGTR 227
>gi|325288842|ref|YP_004265023.1| protein of unknown function UPF0001 [Syntrophobotulus glycolicus
DSM 8271]
gi|324964243|gb|ADY55022.1| protein of unknown function UPF0001 [Syntrophobotulus glycolicus
DSM 8271]
Length = 229
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 116/229 (50%), Gaps = 12/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L + +I +A + R + + LVAVSK V + + A + Q +F EN++QE
Sbjct: 1 MSIKQNLLDIRARIVRAAANSGRRIEDIKLVAVSKTVAIEGLAEAYAENQKVFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K+ L D + IGSLQ+NKV + S +I ++ R L+ E K+
Sbjct: 61 WQDKYEHLAA--DCEWHIIGSLQTNKVKYLNSRIVLIHSLDRLPLLEKLNSEGEKKGGVW 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAMGNPKPHFYLL 177
+QVN + K+G+ N+ +DF+ ++ ++GLM I G + F+ L
Sbjct: 119 NALVQVNVARDEAKAGLEVNEVRDFIENAVAFPKVKIKGLMTIGALNATAGETRDCFHQL 178
Query: 178 SEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E+ K+ +LSMGM+ DFE AI GAT VRIGS IFG R
Sbjct: 179 RELRNSLQTVKYPEKIQELSMGMSDDFETAIEEGATIVRIGSRIFGHRS 227
>gi|323978754|gb|EGB73835.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
TW10509]
Length = 234
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 111/235 (47%), Gaps = 26/235 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRK------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K ++ EW FIG LQSNK + FD T+ R + A+ L+ +
Sbjct: 63 VDKIRHFQELGVTGLEW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPA 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V IQ+N E KSGI + + + +L + GLM IP P+ +
Sbjct: 119 ELPHLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPA----PESEYV 174
Query: 176 LLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 175 RQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|299532897|ref|ZP_07046284.1| hypothetical protein CTS44_18927 [Comamonas testosteroni S44]
gi|298719121|gb|EFI60091.1| hypothetical protein CTS44_18927 [Comamonas testosteroni S44]
Length = 240
Score = 104 bits (260), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 103/216 (47%), Gaps = 25/216 (11%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRF 78
P SV L+AVSK + +R A+ GQ F EN +QEA +K +R +Q
Sbjct: 25 PVTSVQLLAVSKTFGADAVREAVLAGQRSFGENYIQEAVEKIAAVRAMQLAGGQALQWHC 84
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG +QSNK + FD +TV R K A LS + + L V IQVN KSG+M
Sbjct: 85 IGPIQSNKTRLVAENFDWAQTVDRLKIAERLSAQRPQGMARLNVCIQVNVDGGATKSGVM 144
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK------------- 185
Q + + L + G+M IP + P F + ++ K
Sbjct: 145 AEQALELAQAMVKLPNLQLRGIMSIP----DDAPDFEAQCVVHKKAKAVFESIKASGLAG 200
Query: 186 ---LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGMT D E A+A+G+T VR+GSGIFG+R
Sbjct: 201 LEHFDTLSMGMTGDLEAAVAAGSTMVRVGSGIFGKR 236
>gi|254375228|ref|ZP_04990708.1| conserved hypothetical protein [Francisella novicida GA99-3548]
gi|151572946|gb|EDN38600.1| conserved hypothetical protein [Francisella novicida GA99-3548]
Length = 222
Score = 104 bits (260), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 104/203 (51%), Gaps = 16/203 (7%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSNKVS 88
L+AVSK KI S GQ+ F EN QE ++K L W FIGSLQS K+
Sbjct: 24 LLAVSKYQSIDKIMCLASLGQLDFGENYFQELEQKAQKLPHLRW----HFIGSLQSRKIK 79
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV-- 146
IV I++V + + + ++ + V++Q+N +I KSG Q ++ +
Sbjct: 80 NIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVIQS 139
Query: 147 -ILCRQKYQLNVEGLMCIPPAMGNPKP------HFY--LLSEIARECKLTKLSMGMTRDF 197
I + L + GLMCIP P+ HF+ + S + + KL++LSMGM+ D+
Sbjct: 140 IIKAKSFINLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNSRLNDDLKLSRLSMGMSADY 199
Query: 198 ELAIASGATSVRIGSGIFGERPC 220
LAI G+T VR+GS +FG R
Sbjct: 200 TLAIQYGSTDVRVGSSLFGARAT 222
>gi|327412910|emb|CAX67924.1| conserved hypothetical protein [Salmonella bongori]
Length = 234
Score = 104 bits (260), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 110/231 (47%), Gaps = 18/231 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAYIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLR--KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP P+ + E
Sbjct: 123 LNVLIQINISDENSKSGIPLAELDELAAAVAILPRLRLRGLMAIPA----PESDYVRQFE 178
Query: 180 IARECKLT------------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 179 VARQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|325335191|gb|ADZ11465.1| Predicted enzyme with a TIM-barrel fold [Riemerella anatipestifer
RA-GD]
Length = 234
Score = 104 bits (260), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 112/216 (51%), Gaps = 16/216 (7%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDV 74
S ++++ PK +V+LVAVSK + I+ + G +F ENK+QE AK +P D+
Sbjct: 24 SKLISQIPK-TVNLVAVSKTYPVEDIQKVYNLGHKVFGENKVQELVAKHTELP----SDI 78
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
Q IG LQ+NKV I I++V EK + + K R + + +QV E K
Sbjct: 79 QWHLIGHLQTNKVKYIAPFIHTIQSVDSEKLLQEIDKQAGKHKRLINILLQVKIAEEDTK 138
Query: 135 SGIMPNQTKDFVILCRQKYQLNV--EGLMCIPPAMGNP---KPHFYLLSE----IARECK 185
+G+ N+ K+ + +Q N+ +GLM + + + F L + ++ +
Sbjct: 139 TGLEVNEVKELCVKIKQGEFPNIKLQGLMGMATFTDDETQIRREFSFLKQLYDYLSDSHQ 198
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L LSMGM+ DF LAI GA S+R+GS IFG R Q
Sbjct: 199 LNTLSMGMSGDFPLAIECGANSIRVGSAIFGARNYQ 234
>gi|89074107|ref|ZP_01160606.1| Predicted enzyme with a TIM-barrel fold [Photobacterium sp. SKA34]
gi|89050043|gb|EAR55569.1| Predicted enzyme with a TIM-barrel fold [Photobacterium sp. SKA34]
Length = 236
Score = 104 bits (260), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 101/207 (48%), Gaps = 11/207 (5%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL---RFI 79
R DSV L+AVSK + I A++ GQ F EN +QE K + L FI
Sbjct: 24 RAADSVQLLAVSKTKPVEAIEEAIAAGQYAFGENYVQEGVDKVNHFSGHPENNLLVWHFI 83
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G +QSNK + FD + ++ R KTA L+ + L V +QVN+ E KSGI
Sbjct: 84 GPIQSNKTRLVAEHFDWVHSIDRIKTAKRLNDQRPTSMAPLQVLLQVNSSAEATKSGITL 143
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPK--PHFYLLSEIARECKLT-----KLSM 191
+ + + GLM IP PA F L++ + KLT LSM
Sbjct: 144 AEVPALAAEIAAMPNIELRGLMSIPQPATDYDSQFATFKALADTLEQLKLTYPNVDTLSM 203
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 204 GMSGDMEAAIAAGSTIVRIGTAIFGAR 230
>gi|15895390|ref|NP_348739.1| TIM-barrel fold family protein [Clostridium acetobutylicum ATCC
824]
gi|15025111|gb|AAK80079.1|AE007713_4 Predicted enzyme with a TIM-barrel fold [Clostridium acetobutylicum
ATCC 824]
Length = 221
Score = 104 bits (260), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 111/229 (48%), Gaps = 22/229 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + LQ K+KI PK+ V+LVAVSK + I+ A G F ENK+QE
Sbjct: 1 MGITYNLQKVKEKI---------PKE-VTLVAVSKTKPIEDIKEAYEQGIRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ + DV+ IG LQ NKV IV +I ++ K + +
Sbjct: 51 LMSKYDEMNS--DVRWHLIGHLQVNKVKYIVGKVFLIHSLDSIKLLKEIEKRYTNEGLKA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPHFY---- 175
V I VN G E K+GI+ + + C++ +NV+GLM IP N H++
Sbjct: 109 DVLIYVNIGREESKTGILEENLEALLDECQKCNSVNVKGLMAVIPVGDDNSNRHYFRKMK 168
Query: 176 -----LLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L + + + LSMGMT D+E+AIA GA VR+G GIFG+R
Sbjct: 169 AIFDDLKHKNIKNVDMKYLSMGMTHDYEIAIAEGANIVRVGEGIFGKRD 217
>gi|332289947|ref|YP_004420799.1| alanine racemase [Gallibacterium anatis UMN179]
gi|330432843|gb|AEC17902.1| alanine racemase [Gallibacterium anatis UMN179]
Length = 229
Score = 104 bits (260), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 110/231 (47%), Gaps = 19/231 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L +Q+I + P V+L+AVSK I A GQ F EN +QE
Sbjct: 1 MEIAQNLAHIRQQIADC-----HPTQEVTLLAVSKTKPFADILKAYHAGQRQFGENYVQE 55
Query: 61 AKKKWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+K I L ++ D+ IG LQSNK + FD ++T+ R K A LS +
Sbjct: 56 GVEK-IQLAQQQNINDITWHLIGPLQSNKTRIVAEHFDWVQTIDRVKIAERLSQQRPDHL 114
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
+ L V IQ+N E KSGI P Q ++ +L + GLM IP + +
Sbjct: 115 QPLQVLIQINISDENSKSGITPQQMEELAQQIINLPKLQLRGLMAIPAPTEDINQQTAVF 174
Query: 178 S----------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + K+ LSMGMT D + AIA G+T VRIG+ IFG+R
Sbjct: 175 NQMKVLLQQLQQRFPQQKIDTLSMGMTDDMQTAIACGSTMVRIGTAIFGKR 225
>gi|227544397|ref|ZP_03974446.1| TIM-barrel fold protein [Lactobacillus reuteri CF48-3A]
gi|300909742|ref|ZP_07127203.1| YggS family pyridoxal phosphate enzyme [Lactobacillus reuteri
SD2112]
gi|227185660|gb|EEI65731.1| TIM-barrel fold protein [Lactobacillus reuteri CF48-3A]
gi|300893607|gb|EFK86966.1| YggS family pyridoxal phosphate enzyme [Lactobacillus reuteri
SD2112]
Length = 235
Score = 104 bits (260), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 111/231 (48%), Gaps = 16/231 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ +K + ++KI + + R V L+ VSK + I G F EN +QE
Sbjct: 1 MTIVDKAKDVQEKIIAACKRSGRDPQDVQLLPVSKNHPAADIAELYKAGWNSFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK L D+ IG LQ NKV I +I++V K + E K +R +
Sbjct: 61 LDKKHDELPA--DINWYMIGHLQRNKVKYIADYVTMIQSVDSLKLMKTIEKEGRKHNRII 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL---NVEGLMCIPPAMGNP---KPHF 174
P+ I+VN G E K G+ P +D + L QL + GLM P +P +P F
Sbjct: 119 PILIEVNVGEEESKFGVKPT-LQDCMELAEASLQLPHVKLRGLMTSAPYYDDPEKTRPIF 177
Query: 175 YLLSEIARE-------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E+ E KL LSMGMT D+E+A+ G+T VR+G+ IFG R
Sbjct: 178 RRLHELRDEMNNQNDQLKLDVLSMGMTHDYEIAVEEGSTCVRVGTAIFGPR 228
>gi|325661586|ref|ZP_08150210.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
4_1_37FAA]
gi|331084855|ref|ZP_08333943.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325472113|gb|EGC75327.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
4_1_37FAA]
gi|330410949|gb|EGG90371.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 233
Score = 104 bits (260), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 116/227 (51%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ + K++++ + R + V+L+AVSK ++ G F ENK+QE
Sbjct: 2 LEKNLKSIQDKVKDACKRSGRHPEDVTLIAVSKTKPVSMLQEIYDLGIRQFGENKVQELT 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L K D+ IG LQ NKV ++ +I +V + A + E K++ + V
Sbjct: 62 DKYEKLPK--DISWHMIGHLQRNKVKYLIGKTTLIHSVDSLRLAEAIEAEAAKKNCLVDV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
I+VN E K GI P + V + + ++GLM I P + NP+ HF L +
Sbjct: 120 LIEVNVAGEESKFGISPEEVLPLVEQIARFRHIKIKGLMTIAPFVENPEENRIHFANLRK 179
Query: 180 IARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + + LSMGMT D+E+AI GAT VR+G+GIFGER
Sbjct: 180 LSVDIAAKNIDNVSMRILSMGMTNDYEVAIEEGATMVRVGTGIFGER 226
>gi|90407098|ref|ZP_01215287.1| putative alanine racemase [Psychromonas sp. CNPT3]
gi|90311820|gb|EAS39916.1| putative alanine racemase [Psychromonas sp. CNPT3]
Length = 232
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 112/227 (49%), Gaps = 26/227 (11%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+Q+IE++A+ A R V L+AVSK +I+ A GQ +F EN +QE+ +K I L K
Sbjct: 12 RQQIEHAAVQAGRTTLDVQLLAVSKTKPVAQIKEAYMAGQRLFGENYVQESIEK-IQLIK 70
Query: 71 E---------WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ W FIG LQSNK + FD +++V R K A LS + L
Sbjct: 71 DDCSFNDPICW----YFIGPLQSNKTRLVAENFDWVQSVDRFKIAQRLSAQRPTNLTPLN 126
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---------P 172
+ +Q+N E KSG Q + L + G+M IP +
Sbjct: 127 ICLQINISAEASKSGTTLTQIMELAAQVSLLENLTLRGIMAIPEKTQDQAILSQQFKALH 186
Query: 173 HFYL-LSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
H YL L + E + LSMGM+ D +LAIASG+T VRIG+ IFG R
Sbjct: 187 HIYLKLQTLYPE--VDTLSMGMSADMQLAIASGSTMVRIGTDIFGRR 231
>gi|93005125|ref|YP_579562.1| hypothetical protein Pcryo_0294 [Psychrobacter cryohalolentis K5]
gi|92392803|gb|ABE74078.1| Protein of unknown function UPF0001 [Psychrobacter cryohalolentis
K5]
Length = 276
Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 104/205 (50%), Gaps = 9/205 (4%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW---DVQLRFI 79
R SV+L+AVSK ++ + GQ F EN LQEA +K LR++ + +I
Sbjct: 71 RAPSSVTLLAVSKTKSAEMVATLARQGQHDFGENYLQEAIEKIQLLREQVGCKHIVWHYI 130
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
GS+Q NK +I FD ++T+ R+ A L+ + + L V IQ+N E KSG +P
Sbjct: 131 GSIQRNKTRDIAEHFDWVQTLERDIIAKRLNDQRPAELPPLNVLIQINIDNEDSKSGCLP 190
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLSEIARE----CKLTKLSMGM 193
Q + + + +L + GLM IP K L +I R + LSMGM
Sbjct: 191 EQLPELLTAIKNYERLQLRGLMIIPAKANTDAFKRTKQLFDDIKRTHPELSQWDTLSMGM 250
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D AIASG T VR+G+ IFG R
Sbjct: 251 SDDMTDAIASGTTMVRVGTAIFGAR 275
>gi|52550023|gb|AAU83872.1| conserved hypothetical protein [uncultured archaeon GZfos34H10]
Length = 224
Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 109/211 (51%), Gaps = 14/211 (6%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+LA+ PKD V L A +K +++ A+ G I EN +QEA++ + + + V F
Sbjct: 14 LLAELPKDVV-LEAAAKTRTTEETLAAIEAGITIVGENYIQEAERAFEVIGR--VVNWHF 70
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ NKV + V LFD+IET+ A ++ K + +P+ I++N+G E QK G+
Sbjct: 71 IGHLQRNKVKKAVELFDLIETIDSFSIAEEVNRVSSKIGKIMPILIEINSGREPQKFGVF 130
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECK--------LT 187
P + V+ + + GLM + P + + +F EI K +
Sbjct: 131 PEYVAELVVKISALASVKIVGLMTMGPYEEDIEKSRLYFRAAKEIFERIKKSGIPSVDMR 190
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ + +AI GA VR+G+GIFG R
Sbjct: 191 FLSMGMSDSYNIAIEEGANIVRVGTGIFGPR 221
>gi|83592477|ref|YP_426229.1| hypothetical protein Rru_A1141 [Rhodospirillum rubrum ATCC 11170]
gi|83575391|gb|ABC21942.1| Protein of unknown function UPF0001 [Rhodospirillum rubrum ATCC
11170]
Length = 271
Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 9/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + +I ++ R + V L+ V+K V + +R+A + G FAENKLQEA
Sbjct: 24 AFAANLLTVRDRIASACRRCGRQPEEVRLLPVTKTVPAPLLRLAFAAGLSDFAENKLQEA 83
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K + L + ++ IG LQ+NKV +V + + A ++ + Q R L
Sbjct: 84 RDKQVEL-ADLAIRWSIIGHLQTNKVKYLVRFAAEFHALDSLRLAEEMNRRLDAQGRDLD 142
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V++QVNT E K G+ P + FV +L GLM + + + F LL
Sbjct: 143 VFVQVNTSGEASKYGLPPAEVIPFVERLADYPRLKPRGLMTLAIFSADTDRVRTCFRLLR 202
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + +T+LSMGM+ D+E AI GA VR+G IFG RP
Sbjct: 203 ALRDQTATLHPGMTQLSMGMSGDYEAAIEEGADVVRVGQAIFGPRPT 249
>gi|260904570|ref|ZP_05912892.1| alanine racemase domain-containing protein [Brevibacterium linens
BL2]
Length = 252
Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 110/210 (52%), Gaps = 18/210 (8%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R V ++ +K + KIRVAL G + ENK+QE K L + D + IG L
Sbjct: 44 RTSTDVQVLLATKTQPADKIRVALEHGFTLIGENKVQELVGKAEEL-ADLDHEAHLIGPL 102
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLS--LEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
Q NKV+ + I++V + + ++ LE++ + + +++QVNT E KSGI P
Sbjct: 103 QKNKVNHTLRHAHCIQSVDNLELVTKINNRLEVLDST--VDIFVQVNTSREDSKSGIAPE 160
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE---------CKLTK 188
+ + + R ++ + GLM I P +P + L E+ RE + T+
Sbjct: 161 EAEGLITELRGLSRMKLRGLMTIGLPGRTPEEIRPSYSDLREL-REKLIASDVMPAEATE 219
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ DFELAIA GAT VR+GS +FG R
Sbjct: 220 LSMGMSNDFELAIAEGATMVRVGSSVFGAR 249
>gi|307266460|ref|ZP_07547995.1| alanine racemase domain protein [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306918501|gb|EFN48740.1| alanine racemase domain protein [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 202
Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 104/198 (52%), Gaps = 12/198 (6%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
+A +K + I+ A++CG ENK+QE +K+ L+ E V+ FIG LQ+NKV I
Sbjct: 1 MAATKTFGVETIKEAIACGITDIGENKVQELNEKYPYLKNE--VEFHFIGHLQTNKVKYI 58
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
+ +I ++ K A + ++S + +++N G E K GI P + +FV
Sbjct: 59 IDKVKLIHSLDSIKLAEEIDKRAKQKSLVIDCLVEINIGGEESKYGIPPEEMHNFVKEME 118
Query: 151 QKYQLNVEGLMCIPPAM--GNPKPHFYLLSEIARECKLTK--------LSMGMTRDFELA 200
+ + + GLM I P + +P+F + E+ E K K LSMGM+ D+ +A
Sbjct: 119 KYDNIRIRGLMTIAPYLPPEEVRPYFRKMKELFEELKEIKQHNVQVEFLSMGMSNDYWVA 178
Query: 201 IASGATSVRIGSGIFGER 218
+ GA VRIG+ IFG+R
Sbjct: 179 VEEGANIVRIGTSIFGQR 196
>gi|294626281|ref|ZP_06704884.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294666673|ref|ZP_06731910.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292599427|gb|EFF43561.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292603579|gb|EFF46993.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 248
Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 101/201 (50%), Gaps = 11/201 (5%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V L+AVSK + + + GQ F EN +QEA K LR D++ IG LQSNK
Sbjct: 42 DVRLLAVSKTKPADAVAALAAQGQRAFGENYVQEADAKIAQLRA-LDLEWHLIGHLQSNK 100
Query: 87 VSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
+E+ SL FD ++TV R K LL+ L V IQVN E K G P
Sbjct: 101 -AELASLCFDWVQTVDRAKLIPLLARHRPDDRAPLNVLIQVNIDDEDSKHGCAPEAIDSL 159
Query: 146 VILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI-----ARECKLTKLSMGMTRDF 197
V + +L + GLM IP P + F + + AR ++ LSMGM+ DF
Sbjct: 160 VEAIALQPRLQLRGLMAIPAPFPDQARRQAAFSRMQALFQQLQARHRQVDTLSMGMSSDF 219
Query: 198 ELAIASGATSVRIGSGIFGER 218
AIA+GAT VR+G+ +FG R
Sbjct: 220 AEAIAAGATMVRVGTALFGAR 240
>gi|154483520|ref|ZP_02025968.1| hypothetical protein EUBVEN_01224 [Eubacterium ventriosum ATCC
27560]
gi|149735430|gb|EDM51316.1| hypothetical protein EUBVEN_01224 [Eubacterium ventriosum ATCC
27560]
Length = 230
Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 103/207 (49%), Gaps = 13/207 (6%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R + V+L+AVSK I AL G + + ENK+QE K+ L K +++ IG L
Sbjct: 22 RNPEEVTLIAVSKTKPYTAIEEALPSGILDYGENKVQELCDKFDILPK--NIRWHMIGHL 79
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q NKV +V +I +V + A + E K V I+VN E K GI +T
Sbjct: 80 QRNKVKYLVGKVQLIHSVDSLRLAEQIEKEFAKADEIANVLIEVNMAQEESKFGITSQET 139
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR-----------ECKLTKLSM 191
++ + + + ++GLM I P NP+ + + + + LSM
Sbjct: 140 EELIREIAKLPHVRIQGLMTIAPFTDNPETNRVYFKNMKKLSVDINNKNIDNVSMNVLSM 199
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GMT D+++A+ GAT VR+G+GIFGER
Sbjct: 200 GMTGDYQVAVEEGATMVRVGTGIFGER 226
>gi|167037282|ref|YP_001664860.1| alanine racemase domain-containing protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040523|ref|YP_001663508.1| alanine racemase domain-containing protein [Thermoanaerobacter sp.
X514]
gi|256751715|ref|ZP_05492589.1| alanine racemase domain protein [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914570|ref|ZP_07131886.1| alanine racemase domain protein [Thermoanaerobacter sp. X561]
gi|307724194|ref|YP_003903945.1| alanine racemase domain-containing protein [Thermoanaerobacter sp.
X513]
gi|320115698|ref|YP_004185857.1| alanine racemase domain-containing protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166854763|gb|ABY93172.1| alanine racemase domain protein [Thermoanaerobacter sp. X514]
gi|166856116|gb|ABY94524.1| alanine racemase domain protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256749384|gb|EEU62414.1| alanine racemase domain protein [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889505|gb|EFK84651.1| alanine racemase domain protein [Thermoanaerobacter sp. X561]
gi|307581255|gb|ADN54654.1| alanine racemase domain protein [Thermoanaerobacter sp. X513]
gi|319928789|gb|ADV79474.1| alanine racemase domain protein [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 202
Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 104/198 (52%), Gaps = 12/198 (6%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
+A +K + I+ A++CG ENK+QE +K+ L+ E V+ FIG LQ+NKV I
Sbjct: 1 MAATKTFGVETIKEAIACGITDIGENKVQELNEKYPYLKNE--VKFHFIGHLQTNKVKYI 58
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
+ +I ++ K A + ++S + +++N G E K GI P + +FV
Sbjct: 59 IDKVKLIHSLDSIKLAEEIDKRAKQKSLIIDCLVEINIGGEESKYGIPPEEMHNFVKEME 118
Query: 151 QKYQLNVEGLMCIPPAM--GNPKPHFYLLSEIARECKLTK--------LSMGMTRDFELA 200
+ + + GLM I P + +P+F + E+ E K K LSMGM+ D+ +A
Sbjct: 119 KYDNIRIRGLMAIAPYLPPEEVRPYFRKMKELFEELKEIKQHNVQVEFLSMGMSNDYWVA 178
Query: 201 IASGATSVRIGSGIFGER 218
+ GA VRIG+ IFG+R
Sbjct: 179 VEEGANIVRIGTSIFGQR 196
>gi|295097490|emb|CBK86580.1| pyridoxal phosphate enzyme, YggS family [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 233
Score = 104 bits (259), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 110/227 (48%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A++ G F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRAPEEITLLAVSKTKPASAIAEAIAAGHRAFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K R+ D+Q FIG LQSNK + FD T+ R + A+ LS + +
Sbjct: 63 VDKIRAFRERGNTDLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLSDQRPAEMPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + +L + GLM IP + + F + +
Sbjct: 123 LNVLIQINISDENSKSGITLGELDALAADVAALPRLTLRGLMAIPAPESSYERQFAVAQQ 182
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFEALKARYDTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|238759328|ref|ZP_04620494.1| alanine racemase [Yersinia aldovae ATCC 35236]
gi|238702489|gb|EEP95040.1| alanine racemase [Yersinia aldovae ATCC 35236]
Length = 228
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 102/221 (46%), Gaps = 8/221 (3%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
LQ + KI +A R + V L+AVSK I A++ GQ F EN +QE K
Sbjct: 7 NLQDVRAKIATAARNCARSPEEVILLAVSKTKPVTAIEEAIAAGQYAFGENYVQEGVDKI 66
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+++ FIG LQSNK + F TV R K A LS + L V IQ
Sbjct: 67 HYFANNANLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPPLNVLIQ 126
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN--------PKPHFYLL 177
VN E KSGI + LN+ GLM IP + + H L
Sbjct: 127 VNISDEESKSGIALAGLPALADSLSELPNLNLRGLMAIPAVESDYQRQLAVFEQMHQAFL 186
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ AR ++ LSMGMT D AI++G+T VRIG+ IFG R
Sbjct: 187 TLKARYPQMDTLSMGMTDDMAAAISAGSTLVRIGTAIFGSR 227
>gi|306820239|ref|ZP_07453881.1| YggS family pyridoxal phosphate enzyme [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551736|gb|EFM39685.1| YggS family pyridoxal phosphate enzyme [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 232
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 115/217 (52%), Gaps = 16/217 (7%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD 73
I+N+ +K +D V L+AVSK VD +K++ A+ G V F ENK QE +K+ D
Sbjct: 16 IKNALARSKYNQD-VKLIAVSKTVDVEKVKEAIDSGVVDFGENKPQELVRKYEVYN---D 71
Query: 74 VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ 133
+ IG+LQ NKV I+ +I ++ + ++ +P IQ+N E
Sbjct: 72 LNWHLIGTLQKNKVKYIIDKACLIHSLDSFALCDEVDKRAKDKNIIIPCLIQINISGEET 131
Query: 134 KSGIMPNQTKDFV-ILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEI--------A 181
K GI ++ +FV ++ + + ++GLM + + +P+F + E+
Sbjct: 132 KHGIKESELTEFVKVVTEKNTNIKLKGLMGMAAFEEDKEKTRPYFQRMKELLVSVNSKNI 191
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++T+LSMGM+ DFE+AI GAT VRIG+ IFGER
Sbjct: 192 NSLEMTELSMGMSNDFEIAIEEGATMVRIGTTIFGER 228
>gi|52548657|gb|AAU82506.1| conserved hypothetical protein [uncultured archaeon GZfos18B6]
Length = 224
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 110/211 (52%), Gaps = 14/211 (6%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+LA+ PK+ V L A +K +++ A+ G I EN +QEA++ + + + V F
Sbjct: 14 LLAELPKEVV-LEAAAKTRTTEETLAAIEAGITIVGENYIQEAERAFEVIGR--VVNWHF 70
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ NKV + V LFD+IET+ A ++ K + +P+ I+VN+G E QK G+
Sbjct: 71 IGHLQRNKVKKAVELFDLIETIDSFPIAEEINRVSSKIGKIMPILIEVNSGREPQKFGVF 130
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECK--------LT 187
P ++ V+ + + GLM + P + + +F EI K +
Sbjct: 131 PEDVEELVVKISALASVKIVGLMTMGPYEEDIEKSRSYFRAAKEIFERIKKSGIPSVDMR 190
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ + +AI GA +R+G+GIFG R
Sbjct: 191 FLSMGMSDSYNIAIEEGANIIRVGTGIFGPR 221
>gi|323493580|ref|ZP_08098701.1| hypothetical protein VIBR0546_04999 [Vibrio brasiliensis LMG 20546]
gi|323312103|gb|EGA65246.1| hypothetical protein VIBR0546_04999 [Vibrio brasiliensis LMG 20546]
Length = 238
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 102/209 (48%), Gaps = 13/209 (6%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---EWDVQLRFI 79
R + SV L+AVSK + I A GQ F EN +QE K I + E +++ FI
Sbjct: 24 RGRGSVQLLAVSKTKPIEAILEAAQAGQTAFGENYVQEGANKVIHFAQHHPELNLEWHFI 83
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G +QSNK + F + TV R K A L+ + + + V IQVNT E KSGI
Sbjct: 84 GPIQSNKSRHVAENFAWVHTVDRAKIAQRLNDQRPQGLEPIQVLIQVNTSGESSKSGIDN 143
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR----------ECKLTKL 189
+ L L + GLM IP + + + +++A+ E + L
Sbjct: 144 EEIFAIAELISSLPNLTLRGLMSIPANVSDYQSQLAAFTQLAQLKDKLAQQFPEQNIDTL 203
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMGM+ D + AI +G+T VRIG+ IFG R
Sbjct: 204 SMGMSGDMDAAIEAGSTMVRIGTAIFGAR 232
>gi|328676168|gb|AEB27038.1| hypothetical protein FNFX1_0090 [Francisella cf. novicida Fx1]
Length = 222
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 105/203 (51%), Gaps = 16/203 (7%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSNKVS 88
L+AVSK KI S GQ+ F EN QE ++K L W FIGSLQS K+
Sbjct: 24 LLAVSKYQVIDKIEYLASLGQLDFGENYFQELEQKAQKLPHLRW----HFIGSLQSRKIK 79
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV-- 146
IV I++V + + + ++ + V++Q+N +I KSG Q ++ V
Sbjct: 80 HIVRYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVVAS 139
Query: 147 -ILCRQKYQLNVEGLMCIPPAMGNPKP------HFY--LLSEIARECKLTKLSMGMTRDF 197
+ + L + GLMCIP +P+ HF+ + S + + KL++LSMGM+ D+
Sbjct: 140 IMKAKSFINLKIVGLMCIPSKSNSPEKSFAKMKHFFDTVNSRLNDDLKLSRLSMGMSADY 199
Query: 198 ELAIASGATSVRIGSGIFGERPC 220
LAI G+T VR+GS +FG R
Sbjct: 200 TLAIQYGSTDVRVGSSLFGARAT 222
>gi|227498577|ref|ZP_03928721.1| alanine racemase [Acidaminococcus sp. D21]
gi|226904033|gb|EEH89951.1| alanine racemase [Acidaminococcus sp. D21]
Length = 234
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 108/231 (46%), Gaps = 19/231 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPK---DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
L KL ++KI+ + L K K D V+++AV+K + + AL G EN++Q
Sbjct: 2 LSEKLASVQKKIDEALALRKEKKVTGDMVTILAVTKNHPPEVVTEALDAGLTEIGENRVQ 61
Query: 60 EA--KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
EA K++ +P R W IG LQ+NK V FD+IE+ K + L +
Sbjct: 62 EAMHKQEVLPKRGHW----HLIGHLQTNKAKHAVEHFDLIESADSAKILTHLDRAAEQVG 117
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKP-- 172
+ V +Q+N E QKSG P + V L V G+M I A +P
Sbjct: 118 KVQDVLLQINEAGESQKSGFQPADFRAIVKTLDAYPHLRVRGVMVIAQATDQVEETRPVF 177
Query: 173 -----HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L + + + LSMGMT D+ +A+ GA +R+GS +FG R
Sbjct: 178 RAGYEDFLFLRDALKHEDVNILSMGMTHDYWIAVEEGANEIRVGSALFGAR 228
>gi|148544413|ref|YP_001271783.1| alanine racemase domain-containing protein [Lactobacillus reuteri
DSM 20016]
gi|227363162|ref|ZP_03847296.1| TIM-barrel fold protein [Lactobacillus reuteri MM2-3]
gi|325682733|ref|ZP_08162249.1| proline synthetase associated protein [Lactobacillus reuteri
MM4-1A]
gi|148531447|gb|ABQ83446.1| alanine racemase domain protein [Lactobacillus reuteri DSM 20016]
gi|227071768|gb|EEI10057.1| TIM-barrel fold protein [Lactobacillus reuteri MM2-3]
gi|324977083|gb|EGC14034.1| proline synthetase associated protein [Lactobacillus reuteri
MM4-1A]
Length = 235
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 111/231 (48%), Gaps = 16/231 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ +K + ++KI + + R V L+ VSK + I G F EN +QE
Sbjct: 1 MTIVDKAKEVQEKIIAACKRSGRDPQDVQLLPVSKNHPAADIAELYKAGWNNFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK L D+ IG LQ NKV I +I++V K + + E K R +
Sbjct: 61 LAKKHDELPA--DINWYMIGHLQRNKVKYIADYVTMIQSVDSLKLMNTIEKEGRKHDRII 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL---NVEGLMCIPPAMGNP---KPHF 174
P+ I+VN G E K G+ P +D + L QL + GLM P +P +P F
Sbjct: 119 PILIEVNVGEEESKFGVKPT-LQDCMELAEASLQLPHVKLRGLMTSAPYYDDPEKTRPIF 177
Query: 175 YLLSEIARE-------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E+ E KL LSMGMT D+E+A+ G+T VR+G+ IFG R
Sbjct: 178 RRLRELRDEMNNQNDQLKLDVLSMGMTHDYEIAVEEGSTCVRVGTAIFGPR 228
>gi|320530721|ref|ZP_08031765.1| pyridoxal phosphate enzyme, YggS family [Selenomonas artemidis
F0399]
gi|320137008|gb|EFW28946.1| pyridoxal phosphate enzyme, YggS family [Selenomonas artemidis
F0399]
Length = 237
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 99/206 (48%), Gaps = 13/206 (6%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V L+AV+K + +R A+ G + EN++QEA K L +E + IG LQ+NK
Sbjct: 34 VELIAVTKNHPVEAMRTAIDSGVMNIGENRIQEALDKAETLERE--AKWHLIGHLQTNKA 91
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
V FD+I +V E A+ + K + + +QVN E KSG+ +
Sbjct: 92 KHAVRQFDLIHSVDSEHLAAEIDKAAEKFGKVQNILVQVNLAREASKSGVYREDLDPLLR 151
Query: 148 LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK--------LTKLSMGMTRD 196
L ++G MCI P N +P F + E+ +E K + LSMGMT D
Sbjct: 152 AVSGLPHLRLQGFMCIAPNYDNEEKCRPLFREMYELFQEAKEKEPPKADIRYLSMGMTHD 211
Query: 197 FELAIASGATSVRIGSGIFGERPCQT 222
+ +A+ GA VR+G+ IFG R T
Sbjct: 212 YTVAVEEGANLVRVGTAIFGARQYHT 237
>gi|307310428|ref|ZP_07590076.1| alanine racemase domain protein [Escherichia coli W]
gi|306909323|gb|EFN39818.1| alanine racemase domain protein [Escherichia coli W]
gi|315062257|gb|ADT76584.1| hypothetical protein ECW_m3209 [Escherichia coli W]
gi|323377159|gb|ADX49427.1| alanine racemase domain protein [Escherichia coli KO11]
Length = 234
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 112/235 (47%), Gaps = 26/235 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L ++KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVREKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRK------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K ++ EW FIG LQSNK + FD T+ R + A+ L+ +
Sbjct: 63 VDKIRHFQELGVTGLEW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPA 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V IQ+N E KSGI + + + +L + GLM IP P+ +
Sbjct: 119 ELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPA----PESEYV 174
Query: 176 LLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 175 RQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|56708695|ref|YP_170591.1| hypothetical protein FTT_1686c [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110671167|ref|YP_667724.1| hypothetical protein FTF1686c [Francisella tularensis subsp.
tularensis FSC198]
gi|134302727|ref|YP_001122695.1| hypothetical protein FTW_1929 [Francisella tularensis subsp.
tularensis WY96-3418]
gi|224457903|ref|ZP_03666376.1| hypothetical protein FtultM_09950 [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254371325|ref|ZP_04987327.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254875569|ref|ZP_05248279.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|56605187|emb|CAG46319.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110321500|emb|CAL09702.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC198]
gi|134050504|gb|ABO47575.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis WY96-3418]
gi|151569565|gb|EDN35219.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254841568|gb|EET20004.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159945|gb|ADA79336.1| hypothetical protein NE061598_09510 [Francisella tularensis subsp.
tularensis NE061598]
Length = 222
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 103/203 (50%), Gaps = 16/203 (7%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSNKVS 88
L+AVSK KI GQ+ F EN QE ++K L W FIGSLQS K+
Sbjct: 24 LLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLPHLRW----HFIGSLQSRKIK 79
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV-- 146
IV I++V + + + ++ + V++Q+N +I KSG Q ++ V
Sbjct: 80 HIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVVAS 139
Query: 147 -ILCRQKYQLNVEGLMCIPPAMGNPKP------HFY--LLSEIARECKLTKLSMGMTRDF 197
+ + L + GLMCIP P+ HF+ + S + + KL++LSMGM+ D+
Sbjct: 140 IMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNSRLNDDLKLSRLSMGMSADY 199
Query: 198 ELAIASGATSVRIGSGIFGERPC 220
LAI G+T VR+GS +FG R
Sbjct: 200 RLAIQYGSTDVRVGSSLFGARAT 222
>gi|301168748|emb|CBW28339.1| predicted enzyme [Haemophilus influenzae 10810]
Length = 237
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 111/233 (47%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEYFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYL 176
L V IQ+N E KSGI P + L + GLM IP + + F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI +T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQVLPNQQIDTLSMGMTDDMPSAIKCSSTMVRIGTSIFGARNYST 233
>gi|251788397|ref|YP_003003118.1| alanine racemase domain-containing protein [Dickeya zeae Ech1591]
gi|247537018|gb|ACT05639.1| alanine racemase domain protein [Dickeya zeae Ech1591]
Length = 241
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 109/224 (48%), Gaps = 11/224 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK- 64
LQ +QKI +A R ++L+AVSK I A++ GQ F EN +QE K
Sbjct: 14 NLQDVRQKISAAAQCCGRDPQEITLLAVSKTKPVSAIEEAIAAGQRAFGENYVQEGVDKV 73
Query: 65 --WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ + + ++ FIG LQSNK + FD T+ R + A LS + L V
Sbjct: 74 RYFQTHQPDTALEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIAQRLSEQRPPHLPPLNV 133
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPK--PHFYLLSE 179
+QVN E KSGI ++ + Q L + GLM IP P + + F ++E
Sbjct: 134 LLQVNISREASKSGIPADELAELAASVAQLPNLRLRGLMAIPAPETEHARQLAIFRQMTE 193
Query: 180 IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K L LSMGMT D AI +G+T VRIG+ IFG R
Sbjct: 194 LFLQLKADYGTLDTLSMGMTDDMAAAIEAGSTMVRIGTAIFGAR 237
>gi|170719558|ref|YP_001747246.1| alanine racemase domain-containing protein [Pseudomonas putida
W619]
gi|169757561|gb|ACA70877.1| alanine racemase domain protein [Pseudomonas putida W619]
Length = 228
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 107/224 (47%), Gaps = 10/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L +I+++A A R S+ L+AVSK + IR + G EN LQEA
Sbjct: 3 TIADNLCALAARIDSAAKAAGRDPASLHLLAVSKTKPASAIRELHAAGVCDVGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K LR D+ L FIG +QSNK I FD + +V R K A LS + K
Sbjct: 63 LAKQDDLR---DLPLIWHFIGPIQSNKTKAIAEHFDWVHSVDRLKIAQRLSEQRPKDLPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PA--MGNPKPHFYL 176
L + +QVN E KSG P L + GLM IP P+ + F
Sbjct: 120 LNICLQVNVSGEESKSGCAPEDLPALANAVAVLPNLRLRGLMAIPEPSEDRAEQEAAFAS 179
Query: 177 LSEIAR--ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L ++ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 LRQLQEGLNLGLDTLSMGMSHDLEAAIAQGATWVRIGTALFGAR 223
>gi|260438390|ref|ZP_05792206.1| pyridoxal phosphate enzyme, YggS family [Butyrivibrio crossotus DSM
2876]
gi|292808976|gb|EFF68181.1| pyridoxal phosphate enzyme, YggS family [Butyrivibrio crossotus DSM
2876]
Length = 230
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 115/225 (51%), Gaps = 13/225 (5%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L+ +++EN+A A R + ++L+AVSK + I+ G F ENK+QE +K
Sbjct: 4 DNLKKVIERMENAAKRAGRNPEDITLIAVSKTKPVELIKQVYDAGIREFGENKVQEIDRK 63
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
L K D++ IG LQ NKV ++ +I +V + A +S + +PV +
Sbjct: 64 SEILPK--DIKWHMIGHLQRNKVKTVIKEACLIHSVDSIRLAEQISKDAATLGISVPVLL 121
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIA 181
+VN E K G +T+ ++ + + V GLM P NP+ +F L ++
Sbjct: 122 EVNIACEESKYGFKAEETEAALVEIAKLPNITVRGLMTSAPITDNPEDNRIYFKALKQLC 181
Query: 182 RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K + LSMGMT DFE+A+ GAT +R+G+ IFGER
Sbjct: 182 VDLKAKNIDNTSMDFLSMGMTGDFEVAVEEGATHIRVGTAIFGER 226
>gi|149923027|ref|ZP_01911445.1| hypothetical protein PPSIR1_13475 [Plesiocystis pacifica SIR-1]
gi|149816148|gb|EDM75658.1| hypothetical protein PPSIR1_13475 [Plesiocystis pacifica SIR-1]
Length = 245
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 108/224 (48%), Gaps = 25/224 (11%)
Query: 16 NSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK---WIPLRKEW 72
N +I A P+ V L+ VSK K+ A + G F EN QE + K W P +
Sbjct: 25 NPSIAADAPE--VRLIGVSKRQPLAKLEAAHAAGLRDFGENYAQELRDKQRDWAPAGDD- 81
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
+ +IG+LQSNK+ +V +I TV R + + + V I+V E
Sbjct: 82 APRWHYIGALQSNKLKYLVGKTTLIHTVDRPELLTAIDRRAHAAGVVQDVLIEVAIAGEA 141
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPH---FYLLSEIARECK-- 185
QK+G+ P D + C + +V GLM IPPA G P+ F L E+ + +
Sbjct: 142 QKAGVAPAALPDLLAACERAEHGSVRCLGLMIIPPA-GTPEDTRCWFQALRELRDDLRGR 200
Query: 186 -----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +LSMGM+ DFE+AIA GAT VR+G+ IFG R
Sbjct: 201 FPGTGEAPRVLLRELSMGMSSDFEVAIAEGATLVRVGTAIFGPR 244
>gi|295394941|ref|ZP_06805154.1| YggS family pyridoxal phosphate enzyme [Brevibacterium mcbrellneri
ATCC 49030]
gi|294972274|gb|EFG48136.1| YggS family pyridoxal phosphate enzyme [Brevibacterium mcbrellneri
ATCC 49030]
Length = 238
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 112/212 (52%), Gaps = 18/212 (8%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A + D V ++ +K + KIRVAL G + EN++QE +K+ L + + IG
Sbjct: 30 ASKHVDRVQILLATKTQPASKIRVALEHGFTLIGENRVQELNEKFDDL-ADIPHETHLIG 88
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLS--LEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
LQ NKV+ + I+++ K A+ + LE++ Q+ + ++QVNT E KSG+
Sbjct: 89 PLQRNKVNHTLGQASCIQSIDSMKLATKIHNRLELLDQT--VEAFVQVNTSREDTKSGVA 146
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCI--PPAM-GNPKPHFYLLSEIARECKL--------- 186
P Q + + ++ + GLM I P + +P + L + R+ L
Sbjct: 147 PEQLGELLTEIAPLERIRLRGLMTIGLPGSTEAEVRPSYADLRNL-RDTHLDSGLLPEHA 205
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
T+LSMGM+ DFELAIA GAT VRIGS +FG R
Sbjct: 206 TELSMGMSNDFELAIAEGATMVRIGSSVFGAR 237
>gi|313667381|ref|YP_004047665.1| hypothetical protein NLA_0230 [Neisseria lactamica ST-640]
gi|313004843|emb|CBN86268.1| conserved hypothetical protein [Neisseria lactamica 020-06]
Length = 234
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 99/206 (48%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AVSK S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGRKPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTAVRLSRQRPSSMPPLQVCIEVNIAGEAAKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY----LLSEI-ARECKLTKLSMG 192
+ + + L V GLMC+ A + K F LL+++ A K LSMG
Sbjct: 142 EAVALAVEVAKLPNLVVRGLMCVAKANSSEAELKTQFQTMQKLLADLNAAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|85060005|ref|YP_455707.1| hypothetical protein SG2027 [Sodalis glossinidius str. 'morsitans']
gi|84780525|dbj|BAE75302.1| conserved hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 231
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 106/228 (46%), Gaps = 19/228 (8%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK- 64
LQ Q+I +A R ++L+AVSK I A+ GQ F EN +QE +K
Sbjct: 7 NLQRVHQQIRTAAQDCGRDPRQITLLAVSKTKPVTVIEAAIEAGQRAFGENYVQEGVEKI 66
Query: 65 -WIPLRKE-----WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
W R E W FIG LQSNK + FD T+ R + A L+ + +
Sbjct: 67 GWFRERPEGAGLIW----HFIGPLQSNKSRSVAENFDWCHTLDRPQLARRLNDQRPVERA 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQ+N E K+GIMP + L + +L + GLM IP + + +
Sbjct: 123 PLNVLIQINISGEATKAGIMPEEMLTLAALVTECPRLRLRGLMAIPAPESDFQRQLAVFK 182
Query: 179 EIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + LS+GMT D AIA+G+T VRIG+ IFG R
Sbjct: 183 RMSALYETLQRVHPGVDTLSLGMTDDMPAAIAAGSTLVRIGTAIFGAR 230
>gi|254253188|ref|ZP_04946506.1| hypothetical protein BDAG_02441 [Burkholderia dolosa AUO158]
gi|124895797|gb|EAY69677.1| hypothetical protein BDAG_02441 [Burkholderia dolosa AUO158]
Length = 262
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 98/201 (48%), Gaps = 9/201 (4%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-EWDVQLRFIGSLQSN 85
SVSL+AVSK + +R A + GQ F EN +QE+ K L D++ FIG LQSN
Sbjct: 58 SVSLLAVSKTFPAADVRAAHAAGQRAFGENYVQESIDKIDALADLRADLEWHFIGPLQSN 117
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
K + FD + +V R K A L+ + L V +QVN E KSG+ P D
Sbjct: 118 KTRAVAERFDWVHSVDRLKIAQRLADQRPAHLPPLNVCVQVNISGEASKSGVAPADVADV 177
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPK----PHFYLLSEI----ARECKLTKLSMGMTRDF 197
L + GLM IP +P PH L + A L LSMGM+ D
Sbjct: 178 AHAVAALPSLRLRGLMAIPEPAADPDAQRAPHRALRALFDTLRADGLPLDTLSMGMSADL 237
Query: 198 ELAIASGATSVRIGSGIFGER 218
E A+ GAT VR+G+ IFG R
Sbjct: 238 EAAVLEGATIVRVGTAIFGAR 258
>gi|269101814|ref|ZP_06154511.1| hypothetical protein VDA_001230 [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161712|gb|EEZ40208.1| hypothetical protein VDA_001230 [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 233
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 102/217 (47%), Gaps = 11/217 (5%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I+ +A R DSV L+AVSK I A+ GQ F EN +QE +K R
Sbjct: 14 EIDAAAKKCGRTADSVQLLAVSKTKPIAAIEEAIQAGQFAFGENYVQEGVEKIEHFRAHP 73
Query: 73 DVQL---RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
FIG LQSNK + FD + +V R K A L+ + L V +Q+NT
Sbjct: 74 QADALTWHFIGPLQSNKSRPVAENFDWVHSVDRLKIAQRLNDQRPTDLPPLNVLLQINTS 133
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR------- 182
E KSG+ Q + Q L + GLM IP + + +A+
Sbjct: 134 GEASKSGLDFEQVAELANQVAQMPNLVLRGLMSIPEQADDYESQLAAFRSLAQALEQLKP 193
Query: 183 -ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+L LSMGM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 194 LHPQLDTLSMGMSGDMDAAIAAGSTIVRIGTAIFGAR 230
>gi|317050340|ref|YP_004111456.1| alanine racemase domain-containing protein [Desulfurispirillum
indicum S5]
gi|316945424|gb|ADU64900.1| alanine racemase domain protein [Desulfurispirillum indicum S5]
Length = 222
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 105/210 (50%), Gaps = 8/210 (3%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
E A+ + ++S LVAVSK + + A G F EN+L E +K L + D+
Sbjct: 14 EIHALSQQAGQESPVLVAVSKTFPASAVLEAYGAGCRDFGENRLPEFLQKVRELPR--DI 71
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
+ F+G LQS K ++V +I ++ R A + + +QVN G E QK
Sbjct: 72 RWHFVGQLQSRKARDVVGKAHLIHSLDRLSLAEAVEKQAASLKLVQGCLVQVNIGDEPQK 131
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL------TK 188
G+ P F+ R + V GLMCIPPA + +F + ++ + + +
Sbjct: 132 GGVKPADLSGFIGQLRSFPHVEVRGLMCIPPASEDATLYFRQMRQLRQRMQEEFPGLGGE 191
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D+ LA+ G+T VRIGS IFG+R
Sbjct: 192 LSMGMSDDYSLAVREGSTLVRIGSAIFGQR 221
>gi|160947744|ref|ZP_02094911.1| hypothetical protein PEPMIC_01679 [Parvimonas micra ATCC 33270]
gi|158446878|gb|EDP23873.1| hypothetical protein PEPMIC_01679 [Parvimonas micra ATCC 33270]
Length = 232
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 105/209 (50%), Gaps = 13/209 (6%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
+ R K + L+ VSK VD KI+ A+ G F ENK+QE KK+ + V+ IG
Sbjct: 19 SNRDKKEIFLLPVSKTVDVDKIQEAIDLGFDTFGENKVQEILKKYEYF--DGKVKFHMIG 76
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
LQ+NKV I+ ++I ++ R L LE + + ++VN G E KSGI
Sbjct: 77 HLQTNKVKSIIDKVELIHSLDRISLLDKLELEAKNKGITVNCLVEVNIGKEDSKSGIFEE 136
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHF----YLLSEIA----RECKLTKL 189
DF+ ++ + V GLM + P + + +F L EI+ + + L
Sbjct: 137 DVLDFIREVSKRDNVLVNGLMTVAPYCEDAEDTRIYFKKMKSLFDEISKLKLKNVDMKIL 196
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMGM+ DF +AI G+ +RIG+ IFG R
Sbjct: 197 SMGMSNDFMVAIEEGSNLIRIGTSIFGAR 225
>gi|218550198|ref|YP_002383989.1| hypothetical protein EFER_2890 [Escherichia fergusonii ATCC 35469]
gi|218357739|emb|CAQ90383.1| putative enzyme [Escherichia fergusonii ATCC 35469]
Length = 234
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 111/235 (47%), Gaps = 26/235 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRK------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K ++ EW FIG LQSNK + FD T+ R + A+ L+ +
Sbjct: 63 VDKIRHFQELGVTGLEW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPA 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V IQ+N E KSGI + + + +L + GLM IP P+ +
Sbjct: 119 ELSPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPA----PESEYV 174
Query: 176 LLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 175 RQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|332086880|gb|EGI92016.1| hypothetical protein SB521682_3506 [Shigella boydii 5216-82]
Length = 234
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 110/235 (46%), Gaps = 26/235 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPL------RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K R EW FIG LQSNK + FD T+ R + A+ L+ +
Sbjct: 63 VDKIRHFQELGVTRLEW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPA 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V IQ+N E KSGI + + + +L + GLM IP P+ +
Sbjct: 119 ELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPA----PESEYV 174
Query: 176 LLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 175 RQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|310766479|gb|ADP11429.1| UPF0001 protein yggS [Erwinia sp. Ejp617]
Length = 266
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 108/229 (47%), Gaps = 17/229 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +Q+I +A R ++L+AVSK + I A++ GQ F EN +QE
Sbjct: 32 SIKHNLQQVRQRISAAAAKCGRASQEITLLAVSKTKPASAIEEAVAAGQCCFGENYVQEG 91
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K I L + FIG LQSNK + FD T+ R + A LS + L
Sbjct: 92 VDK-IQLLANPALVWHFIGPLQSNKSRLVAENFDWCHTIDRLRIAERLSQQRPDALAPLN 150
Query: 122 VYIQVNTGYEIQKSGIM----PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
V IQ+N E KSGIM P + L R L + GLM IP +
Sbjct: 151 VLIQINISAEQSKSGIMLAELPALAQQIAALPR----LKLRGLMAIPAPQDGYDSQLAVC 206
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A K + LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 207 QLMAAAFKQLQQQYPGVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGAR 255
>gi|62262072|gb|AAX78042.1| unknown protein [synthetic construct]
Length = 257
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 103/203 (50%), Gaps = 16/203 (7%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSNKVS 88
L+AVSK KI GQ+ F EN QE ++K L W FIGSLQS K+
Sbjct: 50 LLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLPHLRW----HFIGSLQSRKIK 105
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV-- 146
IV I++V + + + ++ + V++Q+N +I KSG Q ++ V
Sbjct: 106 HIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVVAS 165
Query: 147 -ILCRQKYQLNVEGLMCIPPAMGNPKP------HFY--LLSEIARECKLTKLSMGMTRDF 197
+ + L + GLMCIP P+ HF+ + S + + KL++LSMGM+ D+
Sbjct: 166 IMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNSRLNDDLKLSRLSMGMSADY 225
Query: 198 ELAIASGATSVRIGSGIFGERPC 220
LAI G+T VR+GS +FG R
Sbjct: 226 RLAIQYGSTDVRVGSSLFGARAT 248
>gi|17547402|ref|NP_520804.1| hypothetical protein RSc2683 [Ralstonia solanacearum GMI1000]
gi|17429705|emb|CAD16390.1| putative ipr001608 alanine racemase, n-terminal protein [Ralstonia
solanacearum GMI1000]
Length = 240
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 117/231 (50%), Gaps = 16/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ LQ +Q+I + LA R SV+L+AVSK D+ +R A + GQ +F EN +QE
Sbjct: 4 IAANLQAVRQRITTACTLASRDPASVTLLAVSKTFDADAVRAAHAAGQRLFGENYVQEGT 63
Query: 63 KKWIPLRKEWD----VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K L + + FIG LQSNK + FD + ++ R K A LS +
Sbjct: 64 AKTSALTDLRNGPEAIAWHFIGPLQSNKTRAVAEHFDWVHSIDRLKIAERLSAQRPATLP 123
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY---QLNVEGLMCIP-PA--MGNPKP 172
L V +++N + K G+ P+ + + L R +L + GLM +P PA +
Sbjct: 124 PLQVCLEINISRQASKHGVPPD-LDEVLPLARAVAALPRLRLRGLMAVPEPADDPAARRA 182
Query: 173 HFYLLSEIA-RECK----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L ++A R C + LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 183 PFAALRDLADRLCAAGLPVDTLSMGMSADLEDAIAEGATIVRVGSAIFGAR 233
>gi|291618773|ref|YP_003521515.1| YggS [Pantoea ananatis LMG 20103]
gi|291153803|gb|ADD78387.1| YggS [Pantoea ananatis LMG 20103]
gi|327395106|dbj|BAK12528.1| hypothetical UPF0001 protein YggS [Pantoea ananatis AJ13355]
Length = 235
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 114/229 (49%), Gaps = 16/229 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +Q+I +A R + ++L+AVSK + + A + GQ+ F EN +QE
Sbjct: 3 SIQHNLQQVRQRIAAAATRCGRSPEEITLLAVSKTKPASAVEEAAAAGQIDFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L + FIG LQSNK + F TV R+K A L+ + + L
Sbjct: 63 VEKIQSLTSHPALTWHFIGPLQSNKSRLVAEHFAWCHTVDRQKIAQRLNDQRPEHLPPLN 122
Query: 122 VYIQVNTGYEIQKSGIM----PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
V IQVN E KSGIM +D + + R L + GLM IP + + +
Sbjct: 123 VLIQVNISDENSKSGIMLEAVAGLAQDILTMPR----LRLRGLMAIPAPEEDYQRQLAVC 178
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A + + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 179 QQMADAFDQLKQQYSDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 227
>gi|291543956|emb|CBL17065.1| pyridoxal phosphate enzyme, YggS family [Ruminococcus sp. 18P13]
Length = 229
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 110/206 (53%), Gaps = 13/206 (6%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD--VQLRFI 79
++P++ V L+AV+K VD + VA+ CG + EN++QE + K + ++D Q++FI
Sbjct: 27 RKPEEQVQLMAVTKTVDPALVNVAVECGVRLLGENRVQEYESK----KAQYDPRAQVQFI 82
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G LQ+NKV ++ +I++V A+ + + + + ++VN G E K GI
Sbjct: 83 GQLQTNKVKYLIPEISMIQSVDSLHLANEVERIAARADKVQDILLEVNIGGEESKGGIPA 142
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY---LLSEIARE----CKLTKLSMG 192
+ + +K L+V GLM IPP K F L +I+ E + LSMG
Sbjct: 143 EELHGLLEEAARKPHLHVCGLMTIPPKTDVEKYFFRMQKLFIDISAENMDNIDMHVLSMG 202
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D+ AI G+T VRIGS +FG R
Sbjct: 203 MSGDYVEAIKYGSTLVRIGSALFGAR 228
>gi|300980103|ref|ZP_07174846.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 45-1]
gi|300409360|gb|EFJ92898.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 45-1]
Length = 234
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 111/235 (47%), Gaps = 26/235 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRK------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K ++ EW FIG LQSNK + FD T+ R + A+ L+ +
Sbjct: 63 VDKIHHFQELGVTGLEW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPA 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V IQ+N E KSGI + + + +L + GLM IP P+ +
Sbjct: 119 ELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPA----PESEYV 174
Query: 176 LLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 175 RQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|115314027|ref|YP_762750.1| hypothetical protein FTH_0059 [Francisella tularensis subsp.
holarctica OSU18]
gi|115128926|gb|ABI82113.1| possible alanine racemase [Francisella tularensis subsp. holarctica
OSU18]
Length = 222
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 17/225 (7%)
Query: 9 VFKQKIENSAILAKRPKDS-VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67
++K+ I+ S + DS V L+AVSK KI GQ+ F EN QE ++K
Sbjct: 2 IYKEFIQKSYTSIMQNIDSKVRLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQK 61
Query: 68 L-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L W FIGSLQS K+ IV I++V + + + ++ + V++Q+
Sbjct: 62 LPHLRW----HFIGSLQSRKIKHIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQI 117
Query: 127 NTGYEIQKSGIMPNQTKDFV---ILCRQKYQLNVEGLMCIPPAMGNPKP------HFY-- 175
N +I KSG Q ++ V + + L + GLMCIP P+ HF+
Sbjct: 118 NIDDDINKSGFESTQLEEVVASIMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKHFFDT 177
Query: 176 LLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + + KL++LSMGM+ D+ LAI G+T VR+GS +FG R
Sbjct: 178 VNFRLNDDLKLSRLSMGMSADYRLAIQYGSTDVRVGSSLFGARAT 222
>gi|52549126|gb|AAU82975.1| predicted enzyme with a TIM-barrel fold [uncultured archaeon
GZfos24D9]
Length = 224
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 110/211 (52%), Gaps = 14/211 (6%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+LA+ PK+ V L A +K +++ A+ G I EN +QEA++ + + + V+ F
Sbjct: 14 LLAELPKEVV-LEAAAKTRTTEETLAAIEAGITIVGENYIQEAERAFEVIGR--VVKWHF 70
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ NKV + V LFD+IET+ A ++ K + +P+ I++N+G E QK G+
Sbjct: 71 IGHLQRNKVKKAVELFDLIETIDSFSIAEEVNSVSSKIGKIMPILIEINSGREPQKFGVF 130
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECK--------LT 187
P + V+ + + GLM + P + + +F EI K +
Sbjct: 131 PEDVAELVVKISALASVKIVGLMTMGPYEEDIEKSRLYFRAAKEIFERIKKSGIPSVDMR 190
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ + +AI GA VR+G+GIFG R
Sbjct: 191 YLSMGMSDSYNIAIEEGANIVRVGTGIFGPR 221
>gi|104779598|ref|YP_606096.1| hypothetical protein PSEEN0318 [Pseudomonas entomophila L48]
gi|95108585|emb|CAK13279.1| conserved hypothetical protein [Pseudomonas entomophila L48]
Length = 228
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 107/224 (47%), Gaps = 10/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + +I+N+A A R S+ L+AVSK + IR A + G F EN LQEA
Sbjct: 3 TLAENISAISARIDNAAKAAGRAPASIQLLAVSKTKPASAIREAHASGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K L D+ L FIG +QSNK I FD + +V R K A LS +
Sbjct: 63 LTKQQELS---DLPLIWHFIGPIQSNKTKAIAEHFDWVHSVDRLKIAQRLSEQRPANLPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
L + +QVN E KSG P + L + GLM IP N + F
Sbjct: 120 LNICLQVNVSGEDSKSGCAPAELPALAQAVSALPGLRLRGLMAIPEPTDNRTEQEAAFAT 179
Query: 177 LSEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L ++ + L LSMGM+ D E AI+ GAT VRIG+ +FG R
Sbjct: 180 LRQLQEQLDLGLDTLSMGMSHDLEAAISQGATWVRIGTALFGAR 223
>gi|254522612|ref|ZP_05134667.1| pyridoxal phosphate enzyme, YggS family [Stenotrophomonas sp.
SKA14]
gi|219720203|gb|EED38728.1| pyridoxal phosphate enzyme, YggS family [Stenotrophomonas sp.
SKA14]
Length = 225
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 104/218 (47%), Gaps = 17/218 (7%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-- 70
+ +A A RP L+AVSK ++ + + GQ F EN +QEA K L+
Sbjct: 11 NLHAAAEAAGRPDPR--LLAVSKTQPAEAVAALAAQGQHAFGENYVQEALAKMQALQHLA 68
Query: 71 -EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
EW IG LQSNK + S FD +++V R K + L+ L V IQVN
Sbjct: 69 LEW----HLIGHLQSNKAEAVASHFDWVQSVDRPKLVTALARHRPATRGPLNVLIQVNID 124
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI-----A 181
E K G P++ + L + GLM IP P G + F + + A
Sbjct: 125 DESSKHGCTPDEVDALAAAIAAEPGLRLRGLMAIPAPWPDAGRRRDAFVRMRTLFQALAA 184
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ ++ LSMGM+ D+ AIA GAT VRIG+ +FG RP
Sbjct: 185 QHAQVDTLSMGMSSDYAEAIAEGATLVRIGTALFGARP 222
>gi|50842463|ref|YP_055690.1| hypothetical protein PPA0978 [Propionibacterium acnes KPA171202]
gi|289425389|ref|ZP_06427166.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
SK187]
gi|289427244|ref|ZP_06428960.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
J165]
gi|295130540|ref|YP_003581203.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
SK137]
gi|50840065|gb|AAT82732.1| conserved protein [Propionibacterium acnes KPA171202]
gi|289154367|gb|EFD03055.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
SK187]
gi|289159713|gb|EFD07901.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
J165]
gi|291377313|gb|ADE01168.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
SK137]
gi|327330199|gb|EGE71948.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL097PA1]
gi|332675380|gb|AEE72196.1| hypothetical protein PAZ_c10210 [Propionibacterium acnes 266]
Length = 238
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 110/239 (46%), Gaps = 21/239 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L + +I+++ R VSL+ VSK + A G +F ENK+Q+
Sbjct: 1 MSMADNLAAVRTRIDDACRACDRNPGEVSLLPVSKTKPPSMVDEAYRAGYRLFGENKVQD 60
Query: 61 AKKKWIPLRK-----EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
A K + EW + IG LQ+NK + + + K A L + K
Sbjct: 61 ALAKSELMDANHPGLEWSI----IGGLQTNKAKYVARFATEFQALDSLKIAHELDKRLQK 116
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--- 172
+ R L V +QVN+ E QKSGI P + DF L+V GLM + + +
Sbjct: 117 EGRQLRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRGLMTVALNSSDQRAVAD 176
Query: 173 --------HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER-PCQT 222
L E ++LSMGM+ D E+AIA G+T VRIG+ IFG R P +T
Sbjct: 177 CFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQVRIGTDIFGARDPART 235
>gi|313895886|ref|ZP_07829440.1| pyridoxal phosphate enzyme, YggS family [Selenomonas sp. oral taxon
137 str. F0430]
gi|312975311|gb|EFR40772.1| pyridoxal phosphate enzyme, YggS family [Selenomonas sp. oral taxon
137 str. F0430]
Length = 237
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 99/206 (48%), Gaps = 13/206 (6%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V L+AV+K + +R A+ G + EN++QEA K L +E + IG LQ+NK
Sbjct: 34 VELIAVTKNHPVEAMRTAIDSGVMNIGENRIQEALDKAETLERE--AKWHLIGHLQTNKA 91
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
V FD+I +V E A+ + K + + +QVN E KSG+ +
Sbjct: 92 KHAVRQFDLIHSVDSEHLAAEIDKAAEKFGKVQNILVQVNLAREASKSGVYREDLDPLLR 151
Query: 148 LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK--------LTKLSMGMTRD 196
L ++G MCI P N +P F + E+ +E K + LSMGMT D
Sbjct: 152 AVSGLPHLRLQGFMCIAPNYDNEEKCRPLFREMYELFQEAKEKEPPKADIRYLSMGMTHD 211
Query: 197 FELAIASGATSVRIGSGIFGERPCQT 222
+ +A+ GA VR+G+ IFG R T
Sbjct: 212 YTVAVEEGANLVRVGTAIFGARQYNT 237
>gi|331654463|ref|ZP_08355463.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli M718]
gi|331047845|gb|EGI19922.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli M718]
Length = 234
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 111/235 (47%), Gaps = 26/235 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRK------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K ++ EW FIG LQSNK + FD T+ R + A+ L+ +
Sbjct: 63 VDKIRHFQELGVTGLEW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPA 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V IQ+N E KSGI + + + +L + GLM IP P+ +
Sbjct: 119 ELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPA----PESEYV 174
Query: 176 LLSEIARE------------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 175 RQFEVARQMAVAFAGLKTRYSHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|261379176|ref|ZP_05983749.1| pyridoxal phosphate enzyme, YggS family [Neisseria cinerea ATCC
14685]
gi|269144362|gb|EEZ70780.1| pyridoxal phosphate enzyme, YggS family [Neisseria cinerea ATCC
14685]
Length = 228
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 106/224 (47%), Gaps = 8/224 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + ++I + A R SVSL+AVSK S IR + GQ F EN +QE
Sbjct: 4 LQQRYREVSERIGKLVLQAGRKPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQEWY 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L D+ IG +QSNK + + TV R KTA LS + L +
Sbjct: 64 GKTEELADLPDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTARRLSEQRPSSMPPLQM 123
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY---- 175
I+VN E K G+ P + + + + V GLMC+ A G+ K F
Sbjct: 124 CIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKAGGSEAELKAQFQTMRK 183
Query: 176 LLSEI-ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LLS++ K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 184 LLSDLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|325139253|gb|EGC61798.1| hypothetical protein TIGR00044 [Neisseria meningitidis ES14902]
Length = 228
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 100/206 (48%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AVSK S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGREPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPPLQVCIEVNIAGEAAKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY----LLSEI-ARECKLTKLSMG 192
+ + + + V GLMC+ A + K F LL+++ A K LSMG
Sbjct: 142 EAVVLAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQTMRKLLADLNAAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AIA GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIACGATHVRIGSAIFGKR 227
>gi|221069576|ref|ZP_03545681.1| alanine racemase domain protein [Comamonas testosteroni KF-1]
gi|220714599|gb|EED69967.1| alanine racemase domain protein [Comamonas testosteroni KF-1]
Length = 268
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 112/230 (48%), Gaps = 21/230 (9%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L + +I + R SV L+ VSK +R+A + G ENK+QEA K
Sbjct: 26 SNLATVQARIAAACQRVGRDPASVRLLPVSKTKPQASLRLAYAAGCRWLGENKVQEALGK 85
Query: 65 WIPLRKEWDVQLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
W L+ D++ IG LQ+NK V+ S F ++++ + A L + + R L
Sbjct: 86 WESLQDLTDLRWSVIGHLQTNKARLVARFASEFQALDSL---RVAEALDRRLQAEGRSLD 142
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH-----FYL 176
V++QVNT E K G+ P DF+ L V GLM + A+ + + F L
Sbjct: 143 VFVQVNTSGEASKYGLSPEAVPDFIRQLPVFSALRVRGLMTL--ALFSAEAERVRRCFIL 200
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L ++ + + L LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 201 LRQLRDQLRQGAPAGMALDALSMGMSGDFEIAIEEGATVVRVGQAIFGAR 250
>gi|254167572|ref|ZP_04874423.1| conserved hypothetical protein TIGR00044 [Aciduliprofundum boonei
T469]
gi|289596946|ref|YP_003483642.1| alanine racemase domain protein [Aciduliprofundum boonei T469]
gi|197623381|gb|EDY35945.1| conserved hypothetical protein TIGR00044 [Aciduliprofundum boonei
T469]
gi|289534733|gb|ADD09080.1| alanine racemase domain protein [Aciduliprofundum boonei T469]
Length = 218
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 103/204 (50%), Gaps = 16/204 (7%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW--IPLRKEWDVQLRFIGSLQS 84
V L+A +K ++I A++ G + EN +QEA +K+ I + EW FIG LQ
Sbjct: 17 GVRLLAATKSRTVEEILEAINAGVDLIGENYVQEALQKYEKIGNKVEW----HFIGHLQK 72
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV + + +FDVIETV + A + + V I++N+ E QK+G+MP D
Sbjct: 73 NKVKKALQIFDVIETVDNVELAKEIDKRAKNMEKIAFVMIEINSAREPQKAGVMPEYALD 132
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-------LTKLSMGMT 194
L + G+M + P + P +P+F EI E + + LSMGMT
Sbjct: 133 LADEIYSLEHLRLMGVMTMGPVVDEPEEIRPYFRNTKEIFDELRYIYGDEQIKYLSMGMT 192
Query: 195 RDFELAIASGATSVRIGSGIFGER 218
+ +A+ G VRIG+GIFG R
Sbjct: 193 NTWRVAVEEGTNIVRIGTGIFGPR 216
>gi|224541076|ref|ZP_03681615.1| hypothetical protein CATMIT_00227 [Catenibacterium mitsuokai DSM
15897]
gi|224526000|gb|EEF95105.1| hypothetical protein CATMIT_00227 [Catenibacterium mitsuokai DSM
15897]
Length = 215
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 99/199 (49%), Gaps = 15/199 (7%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE--WDVQLRFIGSLQSNKV 87
LVA +K +D K++ CG +I+ ENK+Q+ KK+ + W FIG+LQ+NKV
Sbjct: 21 LVAATKYIDEKEVEKLEECGVMIYGENKVQDFLKKYEDYHGKGVW----HFIGTLQTNKV 76
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
I+ +I +V+ + + + K + + +QVN E K G + + +
Sbjct: 77 KYIIDKVQMIHSVANYRLIDEIEKQAAKHDLVMDILLQVNIAKEESKHGFNEEEMNEVMD 136
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPHFYL---------LSEIARECKLTKLSMGMTRDFE 198
+ K LN GLM + P + + Y L E +LT+LSMGMT DF
Sbjct: 137 YLKDKPHLNPRGLMMMAPNIEVEETRQYFKATKDLLTKLQESYPNYQLTELSMGMTHDFP 196
Query: 199 LAIASGATSVRIGSGIFGE 217
+A+A G+T VR+G +F E
Sbjct: 197 IAVAEGSTMVRLGHALFDE 215
>gi|254784476|ref|YP_003071904.1| pyridoxal phosphate enzyme, YggS family [Teredinibacter turnerae
T7901]
gi|237687467|gb|ACR14731.1| pyridoxal phosphate enzyme, YggS family [Teredinibacter turnerae
T7901]
Length = 228
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 110/214 (51%), Gaps = 9/214 (4%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I+N+A A R +++L+AVSK + I+ A G F EN LQEA +K I +
Sbjct: 14 RIKNAASNAGRNPQAITLLAVSKRQPNALIQAAYDAGLRDFGENYLQEAVEK-IAVLAMP 72
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
+ + FIG +QSNK I F + +V R K A LS + L + +QVN E
Sbjct: 73 EARWHFIGPIQSNKTRAIAEHFQWVHSVDRLKIAQRLSEQRSPALPPLQICLQVNIDNED 132
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AMGNP----KPHFYLLSEIAREC 184
KSG+ + + + + L + GLM IP A +P + F L + +
Sbjct: 133 TKSGVNVTELETLALAVAELPHLQLRGLMTIPATQYTADNSPFVRLQTLFERLKKHPQLA 192
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ D E AIA+G+T VRIG+ +FGER
Sbjct: 193 NMDTLSMGMSGDMEDAIAAGSTQVRIGTALFGER 226
>gi|30682530|ref|NP_849649.1| alanine racemase family protein [Arabidopsis thaliana]
gi|3157934|gb|AAC17617.1| Similar to hypothetical protein F09E5.8 gb|U37429 from C. elegans.
ESTs gb|T42019 and gb|N97000 come from this gene
[Arabidopsis thaliana]
gi|332190697|gb|AEE28818.1| putative pyridoxal phosphate-dependent enzyme, YBL036C type
[Arabidopsis thaliana]
Length = 255
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 116/221 (52%), Gaps = 16/221 (7%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
Q++ +A A R D + +VAVSK IR GQ F EN +QE +K L +
Sbjct: 32 QRVNQAAEKAGRGSDQIRVVAVSKTKPVSLIRQVYDAGQRSFGENYVQEIIEKAPQLPE- 90
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFD---VIETVSREKTASLLSLEMIKQSRF-LPVYIQVN 127
D++ FIG+LQSNKV ++S +E+V EK A++L + R L V++QVN
Sbjct: 91 -DIEWHFIGNLQSNKVKPLLSGVPNLVTVESVDDEKIANMLDRVVGNIGRKPLKVFVQVN 149
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAMGNPKP-HFYLL----SEIA 181
T E K G+ P+ ++ L GLM I A P +F LL SE+
Sbjct: 150 TSGEDSKFGVEPSGCVGLAKHVKEACSNLEFSGLMTIGMADYTSTPENFKLLAKCRSEVC 209
Query: 182 RECKL----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E + +LSMGM+ DFELAI G+T+VRIGS IFG R
Sbjct: 210 KELGIPEEQCELSMGMSGDFELAIELGSTNVRIGSTIFGAR 250
>gi|323966468|gb|EGB61901.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
M863]
gi|327251719|gb|EGE63405.1| hypothetical protein ECSTEC7V_3570 [Escherichia coli STEC_7v]
Length = 234
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 111/235 (47%), Gaps = 26/235 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRK------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K ++ EW FIG LQSNK + FD T+ R + A+ L+ +
Sbjct: 63 VDKIRHFQELGVTGLEW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPA 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V IQ+N E KSGI + + + +L + GLM IP P+ +
Sbjct: 119 ELPPLNVLIQINISDENSKSGIQLAELDELAAAVSELPRLRLRGLMAIPA----PESEYV 174
Query: 176 LLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 175 RQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|299065758|emb|CBJ36935.1| conserved protein of unknown function, Predicted pyridoxal
phosphate-dependent enzyme [Ralstonia solanacearum
CMR15]
Length = 240
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 116/231 (50%), Gaps = 16/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ LQ +Q+I + LA R SV+L+AVSK D+ +R A + GQ +F EN +QE
Sbjct: 4 IAANLQAVRQRITTACTLASRDPASVTLLAVSKTFDADAVRAAHAAGQRLFGENYVQEGT 63
Query: 63 KKWIPLRKEWD----VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K L + + FIG LQSNK + FD + ++ R K A LS +
Sbjct: 64 TKTCALTDLRNGPEAIAWHFIGPLQSNKTRAVAEHFDWVHSIDRLKIAERLSAQRPATLP 123
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY---QLNVEGLMCIP-PA--MGNPKP 172
L V +++N + K G+ P+ + + L R +L + GLM +P PA +
Sbjct: 124 PLQVCLEINISRQASKHGVPPD-LDEVLPLARAVAALPRLRLRGLMAVPEPADDPAARRA 182
Query: 173 HFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L ++A + + LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 183 PFAALRDLADRLRAAGLPVDTLSMGMSADLEDAIAEGATIVRVGSAIFGAR 233
>gi|282855832|ref|ZP_06265134.1| pyridoxal phosphate enzyme, YggS family [Pyramidobacter piscolens
W5455]
gi|282586346|gb|EFB91612.1| pyridoxal phosphate enzyme, YggS family [Pyramidobacter piscolens
W5455]
Length = 231
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 107/217 (49%), Gaps = 10/217 (4%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVI-FAENKLQEAKKKWIPLRK 70
++E +A + R V+L+AVSK + + A G V F EN++QE + K
Sbjct: 15 DRMEAAARRSGRKAAEVTLLAVSKTKPLETVVAAARTGLVTHFGENRVQEGQAKIPGFPA 74
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
E IG LQ NK + V LFDVIE++ E A+ + ++ + L V I+VN+
Sbjct: 75 ELGAVWHLIGHLQRNKARKAVELFDVIESIDGEGIAAAVERVCAEKDKRLDVLIEVNSSG 134
Query: 131 EIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECKL 186
E K+G + R Q L ++GLM I P G+ + F E+ +L
Sbjct: 135 EASKTGTPAAEVPALADFVRGQCPHLKLQGLMTIGPLGGDERAVRGAFDATRELRDRLRL 194
Query: 187 TK-----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ DFE AI G+T VR+G+ IFG R
Sbjct: 195 SADDLPCLSMGMSGDFEWAIEQGSTEVRVGTAIFGHR 231
>gi|239978967|ref|ZP_04701491.1| hypothetical protein SalbJ_06012 [Streptomyces albus J1074]
gi|291450846|ref|ZP_06590236.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291353795|gb|EFE80697.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 239
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 111/233 (47%), Gaps = 18/233 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV--ALSCGQVIFAENKLQE 60
L L+ +Q+I + A R +D V+L+ V+K + +R+ L GQV AEN+ Q+
Sbjct: 8 LAANLERVEQRIAGACAAAGRDRDEVTLIVVTKTYPASDVRLLAELGVGQV--AENRDQD 65
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K + D+ F+G LQ+NK + D +++V R K + LS + R L
Sbjct: 66 AAPK-AAACADLDLTWHFVGQLQTNKARSVAGYADFVQSVDRAKLVTSLSSAAERAGREL 124
Query: 121 PVYIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AMGNPKP 172
+QV G + G+ P+ ++ L L + G+M + P G P
Sbjct: 125 GCLVQVALDAEAGGRGDRGGVAPDGVEELAGLIEAAPGLRLGGVMTVAPLSGTYAGRPAA 184
Query: 173 HFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L EI+ + T +S GM+ D E A+A+GAT VR+GS + G RP
Sbjct: 185 AFERLREISTSLRAAWPAATMVSAGMSGDLEHAVAAGATHVRVGSAVLGVRPA 237
>gi|21243652|ref|NP_643234.1| hypothetical protein XAC2925 [Xanthomonas axonopodis pv. citri str.
306]
gi|21109229|gb|AAM37770.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 230
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 96/200 (48%), Gaps = 9/200 (4%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V L+AVSK + + + GQ F EN +QEA K LR D++ IG LQSNK
Sbjct: 24 DVRLLAVSKTKPADAVAALAAQGQRAFGENYVQEADAKIAQLRA-LDLEWHLIGHLQSNK 82
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
FD ++TV R K LL+ L V IQVN E K G P+
Sbjct: 83 AELASQCFDWVQTVDRAKLIPLLARHRPDDRAPLNVLIQVNIDDEDSKHGCAPDAIDSLA 142
Query: 147 ILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI-----ARECKLTKLSMGMTRDFE 198
+ +L + GLM IP P + F + + AR ++ LSMGM+ DF
Sbjct: 143 EAIALQPRLQLRGLMAIPAPFPDQARRQAAFSRMQALFRQLQARHRQVDTLSMGMSSDFA 202
Query: 199 LAIASGATSVRIGSGIFGER 218
AIA+GAT VR+G+ +FG R
Sbjct: 203 EAIAAGATMVRVGTALFGAR 222
>gi|332752994|gb|EGJ83378.1| hypothetical protein SF434370_3172 [Shigella flexneri 4343-70]
gi|332999870|gb|EGK19453.1| hypothetical protein SFK218_3954 [Shigella flexneri K-218]
Length = 234
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 111/235 (47%), Gaps = 26/235 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRK------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K ++ EW FIG LQSNK + FD T+ R + A+ L+ +
Sbjct: 63 VDKIRHFQELGVTGLEW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNEQRPA 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V IQ+N E KSGI + + + +L + GLM IP P+ +
Sbjct: 119 ELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPA----PESEYV 174
Query: 176 LLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 175 RQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|218706466|ref|YP_002413985.1| hypothetical protein ECUMN_3303 [Escherichia coli UMN026]
gi|293406458|ref|ZP_06650384.1| UPF0001 protein yggS [Escherichia coli FVEC1412]
gi|298382195|ref|ZP_06991792.1| yggS protein [Escherichia coli FVEC1302]
gi|331664534|ref|ZP_08365440.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli TA143]
gi|218433563|emb|CAR14466.1| putative enzyme [Escherichia coli UMN026]
gi|291426464|gb|EFE99496.1| UPF0001 protein yggS [Escherichia coli FVEC1412]
gi|298277335|gb|EFI18851.1| yggS protein [Escherichia coli FVEC1302]
gi|331058465|gb|EGI30446.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli TA143]
Length = 234
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 111/235 (47%), Gaps = 26/235 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAQAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRK------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K ++ EW FIG LQSNK + FD T+ R + A+ L+ +
Sbjct: 63 VDKIRHFQELGVTGLEW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPA 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V IQ+N E KSGI + + + +L + GLM IP P+ +
Sbjct: 119 ELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPA----PESEYV 174
Query: 176 LLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 175 RQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|54112585|gb|AAV28926.1| NT02FT1551 [synthetic construct]
Length = 222
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 102/203 (50%), Gaps = 16/203 (7%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSNKVS 88
L+AVSK KI GQ+ F EN QE ++K L W FIGSLQS K+
Sbjct: 24 LLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLPHLRW----HFIGSLQSRKIK 79
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV-- 146
IV I++V + + + ++ + V++Q+N I KSG Q ++ V
Sbjct: 80 HIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDHINKSGFESTQLEEVVAS 139
Query: 147 -ILCRQKYQLNVEGLMCIPPAMGNPKP------HFY--LLSEIARECKLTKLSMGMTRDF 197
+ + L + GLMCIP P+ HF+ + S + + KL++LSMGM+ D+
Sbjct: 140 IMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNSRLNDDLKLSRLSMGMSADY 199
Query: 198 ELAIASGATSVRIGSGIFGERPC 220
LAI G+T VR+GS +FG R
Sbjct: 200 RLAIQYGSTDVRVGSSLFGARAT 222
>gi|271501904|ref|YP_003334930.1| alanine racemase domain-containing protein [Dickeya dadantii
Ech586]
gi|270345459|gb|ACZ78224.1| alanine racemase domain protein [Dickeya dadantii Ech586]
Length = 243
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 107/224 (47%), Gaps = 11/224 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
LQ +QKI +A R + ++L+AVSK + A++ GQ F EN +QE K
Sbjct: 13 NLQDVRQKISAAAQRCGRAPEEITLLAVSKTKPVSALEEAIAAGQRAFGENYVQEGVDKV 72
Query: 66 IPLRKEW-DVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ DV L FIG LQSNK + FD T+ R + A LS + L V
Sbjct: 73 RHFQTALPDVALEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIAQRLSEQRPAHLPPLNV 132
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSE 179
+QVN E KSGI+ ++ + L + GLM IP + F ++E
Sbjct: 133 LLQVNISQEASKSGILVSELPELAASVATLPNLRLRGLMAIPAPQADHAQQLAVFRQMTE 192
Query: 180 IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K L LSMGMT D AI +G+T VRIG+ IFG R
Sbjct: 193 LFLQLKVDYGTLDTLSMGMTDDMAAAIEAGSTMVRIGTAIFGAR 236
>gi|221133769|ref|ZP_03560074.1| hypothetical protein GHTCC_02484 [Glaciecola sp. HTCC2999]
Length = 235
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 102/206 (49%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SV L+AVSK + A GQ F EN +QE +K L D+ FIG
Sbjct: 23 ADREPASVQLLAVSKTKPISDVIQAYDAGQRHFGENYVQEGVEKVHALAHLSDLVWHFIG 82
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK I FD ++ R K A L+ + + L V IQVN E+ K+GI P
Sbjct: 83 PIQSNKSKFIAECFDWCHSIDRLKIAQRLNNQRAVDQKPLQVCIQVNIDNEVTKAGITPE 142
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLSEIARECK-----LTKLSMG 192
+ Q QL + G+M IP A + + F L+ + + + + LSMG
Sbjct: 143 ELPAIASQIAQMPQLTLRGIMAIPKATSIITEQRDSFERLAHLYQALQTNFPDVDILSMG 202
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI +G+T VR+G+GIFG+R
Sbjct: 203 MSGDIGPAIEAGSTMVRVGTGIFGQR 228
>gi|282849926|ref|ZP_06259309.1| pyridoxal phosphate enzyme, YggS family [Veillonella parvula ATCC
17745]
gi|294792852|ref|ZP_06757999.1| pyridoxal phosphate enzyme, YggS family [Veillonella sp. 6_1_27]
gi|294794608|ref|ZP_06759744.1| pyridoxal phosphate enzyme, YggS family [Veillonella sp. 3_1_44]
gi|282580363|gb|EFB85763.1| pyridoxal phosphate enzyme, YggS family [Veillonella parvula ATCC
17745]
gi|294454938|gb|EFG23311.1| pyridoxal phosphate enzyme, YggS family [Veillonella sp. 3_1_44]
gi|294456751|gb|EFG25114.1| pyridoxal phosphate enzyme, YggS family [Veillonella sp. 6_1_27]
Length = 228
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 12/222 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +Q++ ++ R D+ LVAV+K + G EN++QEAK+K +
Sbjct: 6 LHAIQQRMADAMARVGRV-DTALLVAVTKNHPVSAVEEVARLGVTHVGENRVQEAKEKQL 64
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
K + IG LQ NKV + V +FD+I +V K + K + V +QV
Sbjct: 65 TY-KGPQLTWHLIGHLQVNKVRQAVPMFDLIHSVDSRKLLDEIEKVAAKHDKIQDVLLQV 123
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF----YLLSE 179
N E K+G+ + + + + V GLMC+ P +P +P F L +
Sbjct: 124 NVAREASKTGMTVEEFPEIRDYAKTLPHVRVRGLMCMAPFFDDPQEARPIFRVANALFED 183
Query: 180 IAR---ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ R E ++ LSMGMT DFE+A+ GA VR+G+ IFGER
Sbjct: 184 MKRYFEEGQIQYLSMGMTHDFEVALEEGANIVRVGTAIFGER 225
>gi|15803490|ref|NP_289523.1| hypothetical protein Z4296 [Escherichia coli O157:H7 EDL933]
gi|15833081|ref|NP_311854.1| hypothetical protein ECs3826 [Escherichia coli O157:H7 str. Sakai]
gi|16130852|ref|NP_417426.1| predicted enzyme, binds pyridoxal 5'-phosphate [Escherichia coli
str. K-12 substr. MG1655]
gi|26249372|ref|NP_755412.1| hypothetical protein c3537 [Escherichia coli CFT073]
gi|74313507|ref|YP_311927.1| hypothetical protein SSON_3104 [Shigella sonnei Ss046]
gi|82545427|ref|YP_409373.1| hypothetical protein SBO_3040 [Shigella boydii Sb227]
gi|82778278|ref|YP_404626.1| hypothetical protein SDY_3122 [Shigella dysenteriae Sd197]
gi|89109728|ref|AP_003508.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110]
gi|110806859|ref|YP_690379.1| hypothetical protein SFV_3005 [Shigella flexneri 5 str. 8401]
gi|157155954|ref|YP_001464304.1| alanine racemase [Escherichia coli E24377A]
gi|157162412|ref|YP_001459730.1| alanine racemase [Escherichia coli HS]
gi|168747557|ref|ZP_02772579.1| alanine racemase family [Escherichia coli O157:H7 str. EC4113]
gi|168753903|ref|ZP_02778910.1| alanine racemase family [Escherichia coli O157:H7 str. EC4401]
gi|168760093|ref|ZP_02785100.1| alanine racemase family [Escherichia coli O157:H7 str. EC4501]
gi|168766958|ref|ZP_02791965.1| alanine racemase family [Escherichia coli O157:H7 str. EC4486]
gi|168773410|ref|ZP_02798417.1| alanine racemase family [Escherichia coli O157:H7 str. EC4196]
gi|168781810|ref|ZP_02806817.1| alanine racemase family [Escherichia coli O157:H7 str. EC4076]
gi|168785809|ref|ZP_02810816.1| alanine racemase family [Escherichia coli O157:H7 str. EC869]
gi|168797526|ref|ZP_02822533.1| alanine racemase family [Escherichia coli O157:H7 str. EC508]
gi|170018808|ref|YP_001723762.1| alanine racemase domain-containing protein [Escherichia coli ATCC
8739]
gi|170082503|ref|YP_001731823.1| hypothetical protein ECDH10B_3126 [Escherichia coli str. K-12
substr. DH10B]
gi|170683383|ref|YP_001745112.1| alanine racemase [Escherichia coli SMS-3-5]
gi|187731481|ref|YP_001881724.1| pyridoxal phosphate enzyme, YggS family [Shigella boydii CDC
3083-94]
gi|191167925|ref|ZP_03029728.1| alanine racemase family [Escherichia coli B7A]
gi|193063475|ref|ZP_03044564.1| alanine racemase family [Escherichia coli E22]
gi|193067463|ref|ZP_03048431.1| alanine racemase family [Escherichia coli E110019]
gi|194426432|ref|ZP_03058987.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli B171]
gi|194431672|ref|ZP_03063963.1| pyridoxal phosphate enzyme, YggS family [Shigella dysenteriae 1012]
gi|195937089|ref|ZP_03082471.1| hypothetical protein EscherichcoliO157_11651 [Escherichia coli
O157:H7 str. EC4024]
gi|208806214|ref|ZP_03248551.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4206]
gi|208811836|ref|ZP_03253165.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4045]
gi|208820717|ref|ZP_03261037.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4042]
gi|209395868|ref|YP_002272431.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4115]
gi|209920410|ref|YP_002294494.1| hypothetical protein ECSE_3219 [Escherichia coli SE11]
gi|215488249|ref|YP_002330680.1| predicted enzyme [Escherichia coli O127:H6 str. E2348/69]
gi|217327080|ref|ZP_03443163.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. TW14588]
gi|218555510|ref|YP_002388423.1| hypothetical protein ECIAI1_3084 [Escherichia coli IAI1]
gi|218696549|ref|YP_002404216.1| putative enzyme [Escherichia coli 55989]
gi|218701661|ref|YP_002409290.1| hypothetical protein ECIAI39_3369 [Escherichia coli IAI39]
gi|238902073|ref|YP_002927869.1| putative enzyme [Escherichia coli BW2952]
gi|253772211|ref|YP_003035042.1| alanine racemase domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254038000|ref|ZP_04872058.1| pyridoxal phosphate enzyme [Escherichia sp. 1_1_43]
gi|254162861|ref|YP_003045969.1| hypothetical protein ECB_02781 [Escherichia coli B str. REL606]
gi|254794903|ref|YP_003079740.1| hypothetical protein ECSP_3922 [Escherichia coli O157:H7 str.
TW14359]
gi|256019247|ref|ZP_05433112.1| predicted enzyme [Shigella sp. D9]
gi|256024540|ref|ZP_05438405.1| predicted enzyme [Escherichia sp. 4_1_40B]
gi|260845621|ref|YP_003223399.1| putative enzyme [Escherichia coli O103:H2 str. 12009]
gi|260857084|ref|YP_003230975.1| putative enzyme [Escherichia coli O26:H11 str. 11368]
gi|260869638|ref|YP_003236040.1| putative enzyme [Escherichia coli O111:H- str. 11128]
gi|261226263|ref|ZP_05940544.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK2000]
gi|261256479|ref|ZP_05949012.1| putative enzyme [Escherichia coli O157:H7 str. FRIK966]
gi|291284272|ref|YP_003501090.1| hypothetical protein G2583_3610 [Escherichia coli O55:H7 str.
CB9615]
gi|293412311|ref|ZP_06655034.1| YggS family pyridoxal phosphate enzyme [Escherichia coli B354]
gi|293416211|ref|ZP_06658851.1| YggS family pyridoxal phosphate enzyme [Escherichia coli B185]
gi|297517998|ref|ZP_06936384.1| hypothetical protein EcolOP_10202 [Escherichia coli OP50]
gi|300815579|ref|ZP_07095803.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 107-1]
gi|300824814|ref|ZP_07104918.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 119-7]
gi|300906485|ref|ZP_07124180.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 84-1]
gi|300921293|ref|ZP_07137662.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 115-1]
gi|300925053|ref|ZP_07140971.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 182-1]
gi|300928106|ref|ZP_07143651.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 187-1]
gi|300940767|ref|ZP_07155313.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 21-1]
gi|300947682|ref|ZP_07161851.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 116-1]
gi|300954202|ref|ZP_07166667.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 175-1]
gi|301027298|ref|ZP_07190644.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 69-1]
gi|301027724|ref|ZP_07191034.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 196-1]
gi|301049254|ref|ZP_07196227.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 185-1]
gi|301328105|ref|ZP_07221246.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 78-1]
gi|301643695|ref|ZP_07243734.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 146-1]
gi|307139636|ref|ZP_07498992.1| hypothetical protein EcolH7_16113 [Escherichia coli H736]
gi|309785221|ref|ZP_07679852.1| pyridoxal phosphate enzyme, YggS family [Shigella dysenteriae 1617]
gi|309794040|ref|ZP_07688465.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 145-7]
gi|312964786|ref|ZP_07779026.1| UPF0001 protein [Escherichia coli 2362-75]
gi|312972807|ref|ZP_07786980.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|331643644|ref|ZP_08344775.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli H736]
gi|331648706|ref|ZP_08349794.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli M605]
gi|331669697|ref|ZP_08370543.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli TA271]
gi|331678945|ref|ZP_08379619.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli H591]
gi|331684578|ref|ZP_08385170.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli H299]
gi|332280356|ref|ZP_08392769.1| conserved hypothetical protein [Shigella sp. D9]
gi|54040264|sp|P67081|YGGS_ECOL6 RecName: Full=UPF0001 protein yggS
gi|54040265|sp|P67082|YGGS_ECO57 RecName: Full=UPF0001 protein yggS
gi|54042612|sp|P67080|YGGS_ECOLI RecName: Full=UPF0001 protein yggS
gi|112489681|pdb|1W8G|A Chain A, Crystal Structure Of E. Coli K-12 Yggs
gi|12517497|gb|AAG58082.1|AE005525_8 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|26109780|gb|AAN81985.1|AE016766_73 Hypothetical protein yggS [Escherichia coli CFT073]
gi|882480|gb|AAA69118.1| ORF_o234 [Escherichia coli str. K-12 substr. MG1655]
gi|1789321|gb|AAC75988.1| predicted enzyme, binds pyridoxal 5'-phosphate [Escherichia coli
str. K-12 substr. MG1655]
gi|13363299|dbj|BAB37250.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|73856984|gb|AAZ89691.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81242426|gb|ABB63136.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|81246838|gb|ABB67546.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|85675761|dbj|BAE77014.1| hypothetical protein [Escherichia coli str. K12 substr. W3110]
gi|110616407|gb|ABF05074.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|157068092|gb|ABV07347.1| alanine racemase family [Escherichia coli HS]
gi|157077984|gb|ABV17692.1| alanine racemase family [Escherichia coli E24377A]
gi|169753736|gb|ACA76435.1| alanine racemase domain protein [Escherichia coli ATCC 8739]
gi|169890338|gb|ACB04045.1| predicted enzyme [Escherichia coli str. K-12 substr. DH10B]
gi|170521101|gb|ACB19279.1| alanine racemase family [Escherichia coli SMS-3-5]
gi|187428473|gb|ACD07747.1| pyridoxal phosphate enzyme, YggS family [Shigella boydii CDC
3083-94]
gi|187770778|gb|EDU34622.1| alanine racemase family [Escherichia coli O157:H7 str. EC4196]
gi|188017916|gb|EDU56038.1| alanine racemase family [Escherichia coli O157:H7 str. EC4113]
gi|189000521|gb|EDU69507.1| alanine racemase family [Escherichia coli O157:H7 str. EC4076]
gi|189358401|gb|EDU76820.1| alanine racemase family [Escherichia coli O157:H7 str. EC4401]
gi|189363749|gb|EDU82168.1| alanine racemase family [Escherichia coli O157:H7 str. EC4486]
gi|189369217|gb|EDU87633.1| alanine racemase family [Escherichia coli O157:H7 str. EC4501]
gi|189374066|gb|EDU92482.1| alanine racemase family [Escherichia coli O157:H7 str. EC869]
gi|189379642|gb|EDU98058.1| alanine racemase family [Escherichia coli O157:H7 str. EC508]
gi|190902010|gb|EDV61756.1| alanine racemase family [Escherichia coli B7A]
gi|192930752|gb|EDV83357.1| alanine racemase family [Escherichia coli E22]
gi|192959420|gb|EDV89855.1| alanine racemase family [Escherichia coli E110019]
gi|194415740|gb|EDX32007.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli B171]
gi|194420028|gb|EDX36106.1| pyridoxal phosphate enzyme, YggS family [Shigella dysenteriae 1012]
gi|195183144|dbj|BAG66689.1| predicted protein [Escherichia coli O111:H-]
gi|208726015|gb|EDZ75616.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4206]
gi|208733113|gb|EDZ81800.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4045]
gi|208740840|gb|EDZ88522.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4042]
gi|209157268|gb|ACI34701.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4115]
gi|209760058|gb|ACI78341.1| hypothetical protein ECs3826 [Escherichia coli]
gi|209760060|gb|ACI78342.1| hypothetical protein ECs3826 [Escherichia coli]
gi|209760062|gb|ACI78343.1| hypothetical protein ECs3826 [Escherichia coli]
gi|209760064|gb|ACI78344.1| hypothetical protein ECs3826 [Escherichia coli]
gi|209760066|gb|ACI78345.1| hypothetical protein ECs3826 [Escherichia coli]
gi|209913669|dbj|BAG78743.1| conserved hypothetical protein [Escherichia coli SE11]
gi|215266321|emb|CAS10752.1| predicted enzyme [Escherichia coli O127:H6 str. E2348/69]
gi|217319447|gb|EEC27872.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. TW14588]
gi|218353281|emb|CAU99241.1| putative enzyme [Escherichia coli 55989]
gi|218362278|emb|CAQ99899.1| putative enzyme [Escherichia coli IAI1]
gi|218371647|emb|CAR19486.1| putative enzyme [Escherichia coli IAI39]
gi|226839624|gb|EEH71645.1| pyridoxal phosphate enzyme [Escherichia sp. 1_1_43]
gi|238862357|gb|ACR64355.1| predicted enzyme [Escherichia coli BW2952]
gi|242378477|emb|CAQ33261.1| predicted enzyme [Escherichia coli BL21(DE3)]
gi|253323255|gb|ACT27857.1| alanine racemase domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974762|gb|ACT40433.1| predicted enzyme [Escherichia coli B str. REL606]
gi|253978928|gb|ACT44598.1| predicted enzyme [Escherichia coli BL21(DE3)]
gi|254594303|gb|ACT73664.1| predicted enzyme [Escherichia coli O157:H7 str. TW14359]
gi|257755733|dbj|BAI27235.1| predicted enzyme [Escherichia coli O26:H11 str. 11368]
gi|257760768|dbj|BAI32265.1| predicted enzyme [Escherichia coli O103:H2 str. 12009]
gi|257765994|dbj|BAI37489.1| predicted enzyme [Escherichia coli O111:H- str. 11128]
gi|260448006|gb|ACX38428.1| alanine racemase domain protein [Escherichia coli DH1]
gi|290764144|gb|ADD58105.1| UPF0001 protein yggS [Escherichia coli O55:H7 str. CB9615]
gi|291432400|gb|EFF05382.1| YggS family pyridoxal phosphate enzyme [Escherichia coli B185]
gi|291469082|gb|EFF11573.1| YggS family pyridoxal phosphate enzyme [Escherichia coli B354]
gi|299879160|gb|EFI87371.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 196-1]
gi|300298950|gb|EFJ55335.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 185-1]
gi|300318786|gb|EFJ68570.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 175-1]
gi|300395104|gb|EFJ78642.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 69-1]
gi|300401728|gb|EFJ85266.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 84-1]
gi|300411755|gb|EFJ95065.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 115-1]
gi|300418799|gb|EFK02110.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 182-1]
gi|300452728|gb|EFK16348.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 116-1]
gi|300454467|gb|EFK17960.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 21-1]
gi|300463872|gb|EFK27365.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 187-1]
gi|300522721|gb|EFK43790.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 119-7]
gi|300531508|gb|EFK52570.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 107-1]
gi|300845409|gb|EFK73169.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 78-1]
gi|301077897|gb|EFK92703.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 146-1]
gi|308122447|gb|EFO59709.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 145-7]
gi|308926341|gb|EFP71817.1| pyridoxal phosphate enzyme, YggS family [Shigella dysenteriae 1617]
gi|310332749|gb|EFP99962.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|312290342|gb|EFR18222.1| UPF0001 protein [Escherichia coli 2362-75]
gi|315137548|dbj|BAJ44707.1| hypothetical protein ECDH1ME8569_2851 [Escherichia coli DH1]
gi|315256843|gb|EFU36811.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 85-1]
gi|315614887|gb|EFU95525.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli 3431]
gi|320174053|gb|EFW49223.1| hypothetical protein SDB_03450 [Shigella dysenteriae CDC 74-1112]
gi|320181044|gb|EFW55965.1| hypothetical protein SGB_01868 [Shigella boydii ATCC 9905]
gi|320184298|gb|EFW59110.1| hypothetical protein SGF_03462 [Shigella flexneri CDC 796-83]
gi|320189300|gb|EFW63959.1| hypothetical protein ECoD_04304 [Escherichia coli O157:H7 str.
EC1212]
gi|320195070|gb|EFW69699.1| hypothetical protein EcoM_02833 [Escherichia coli WV_060327]
gi|320202615|gb|EFW77185.1| hypothetical protein ECoL_00278 [Escherichia coli EC4100B]
gi|320640597|gb|EFX10136.1| hypothetical protein ECO5101_04254 [Escherichia coli O157:H7 str.
G5101]
gi|320645844|gb|EFX14829.1| hypothetical protein ECO9389_23741 [Escherichia coli O157:H- str.
493-89]
gi|320651144|gb|EFX19584.1| hypothetical protein ECO2687_11728 [Escherichia coli O157:H- str. H
2687]
gi|320656640|gb|EFX24536.1| hypothetical protein ECO7815_01885 [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320662159|gb|EFX29560.1| hypothetical protein ECO5905_09823 [Escherichia coli O55:H7 str.
USDA 5905]
gi|320667234|gb|EFX34197.1| hypothetical protein ECOSU61_08909 [Escherichia coli O157:H7 str.
LSU-61]
gi|323154660|gb|EFZ40859.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli EPECa14]
gi|323162603|gb|EFZ48450.1| hypothetical protein ECE128010_1207 [Escherichia coli E128010]
gi|323167997|gb|EFZ53686.1| hypothetical protein SS53G_1713 [Shigella sonnei 53G]
gi|323173835|gb|EFZ59464.1| hypothetical protein ECLT68_2154 [Escherichia coli LT-68]
gi|323180411|gb|EFZ65963.1| hypothetical protein ECOK1180_1093 [Escherichia coli 1180]
gi|323183522|gb|EFZ68919.1| hypothetical protein ECOK1357_3301 [Escherichia coli 1357]
gi|323188655|gb|EFZ73940.1| hypothetical protein ECRN5871_3075 [Escherichia coli RN587/1]
gi|323936046|gb|EGB32341.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
E1520]
gi|323941963|gb|EGB38142.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
E482]
gi|323946551|gb|EGB42574.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
H120]
gi|323971762|gb|EGB66989.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
TA007]
gi|324005507|gb|EGB74726.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 57-2]
gi|324017224|gb|EGB86443.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 117-3]
gi|324119746|gb|EGC13626.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
E1167]
gi|325498508|gb|EGC96367.1| hypothetical protein ECD227_2605 [Escherichia fergusonii ECD227]
gi|326338961|gb|EGD62776.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. 1044]
gi|326343157|gb|EGD66925.1| hypothetical protein ECF_02670 [Escherichia coli O157:H7 str. 1125]
gi|330908986|gb|EGH37500.1| hypothetical protein YggS [Escherichia coli AA86]
gi|331037115|gb|EGI09339.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli H736]
gi|331042453|gb|EGI14595.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli M605]
gi|331063365|gb|EGI35278.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli TA271]
gi|331073775|gb|EGI45096.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli H591]
gi|331078193|gb|EGI49399.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli H299]
gi|332087670|gb|EGI92797.1| hypothetical protein SD15574_3395 [Shigella dysenteriae 155-74]
gi|332091365|gb|EGI96453.1| hypothetical protein SB359474_3533 [Shigella boydii 3594-74]
gi|332102708|gb|EGJ06054.1| conserved hypothetical protein [Shigella sp. D9]
gi|332344851|gb|AEE58185.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|332999698|gb|EGK19283.1| hypothetical protein SFVA6_3845 [Shigella flexneri VA-6]
Length = 234
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 111/235 (47%), Gaps = 26/235 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRK------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K ++ EW FIG LQSNK + FD T+ R + A+ L+ +
Sbjct: 63 VDKIRHFQELGVTGLEW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPA 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V IQ+N E KSGI + + + +L + GLM IP P+ +
Sbjct: 119 ELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPA----PESEYV 174
Query: 176 LLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 175 RQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|326796926|ref|YP_004314746.1| hypothetical protein Marme_3700 [Marinomonas mediterranea MMB-1]
gi|326547690|gb|ADZ92910.1| protein of unknown function UPF0001 [Marinomonas mediterranea
MMB-1]
Length = 233
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 110/229 (48%), Gaps = 10/229 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L K I R +DSV+L+AVSK + I A GQ +F EN +QEA
Sbjct: 4 ISDNLSRVKHDIHTLETRYNRIEDSVNLLAVSKTKPIEAIIEAYEAGQRLFGENYVQEAV 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L+ + FIG +QSNK +I D + TV REK A LS + L V
Sbjct: 64 SKYGELQNYPGIVWHFIGPIQSNKSRQIAETMDWVHTVDREKIARRLSEQRPISKPPLNV 123
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSE 179
IQVN E KSGI ++ + V L + + GLM IP + + L+E
Sbjct: 124 LIQVNISQESSKSGIALSELGEMVDLVNSLPNIVLRGLMAIPAPQESEAAQIDVYRPLTE 183
Query: 180 IAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
A E + LS+GM+ D AIAS ++ VR+G+ IFG R T
Sbjct: 184 -AYEALVEAFLHVDTLSIGMSGDLPAAIASKSSLVRVGTSIFGARDYST 231
>gi|309703306|emb|CBJ02642.1| putative amino acid racemase [Escherichia coli ETEC H10407]
Length = 234
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 111/235 (47%), Gaps = 26/235 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRK------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K ++ EW FIG LQSNK + FD T+ R + A+ L+ +
Sbjct: 63 VDKIRHFQELGVTGLEW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPA 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V IQ+N E KSGI + + + +L + GLM IP P+ +
Sbjct: 119 EFPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPA----PESEYV 174
Query: 176 LLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 175 RQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|309378575|emb|CBX22847.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 234
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 99/206 (48%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AVSK S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGRKPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLPDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTARRLSEQRPSSMPPLQVCIEVNIAGEAAKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY----LLSEI-ARECKLTKLSMG 192
+ + + L V GLMC+ A + K F LL+++ A K LSMG
Sbjct: 142 EAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQTMQKLLADLNAAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|218691075|ref|YP_002399287.1| hypothetical protein ECED1_3414 [Escherichia coli ED1a]
gi|218428639|emb|CAR09568.2| putative enzyme [Escherichia coli ED1a]
Length = 234
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 111/235 (47%), Gaps = 26/235 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRK------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K ++ EW FIG LQSNK + FD T+ R + A+ L+ +
Sbjct: 63 VDKIRHFQELGITGLEW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPA 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V IQ+N E KSGI + + + +L + GLM IP P+ +
Sbjct: 119 ELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPA----PESEYV 174
Query: 176 LLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 175 RQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|298208470|ref|YP_003716649.1| hypothetical protein CA2559_09518 [Croceibacter atlanticus
HTCC2559]
gi|83848393|gb|EAP86262.1| hypothetical protein CA2559_09518 [Croceibacter atlanticus
HTCC2559]
Length = 219
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 107/211 (50%), Gaps = 25/211 (11%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
P+D V LVAVSK + + A + GQ +F ENK+QE +KW L K D++ IG +Q
Sbjct: 15 PEDVV-LVAVSKTKPEEDLLEAYNAGQRVFGENKIQEMTEKWENLPK--DIEWHMIGHVQ 71
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-- 141
SNKV + +++ + R K L+ + K R + +Q+ E K G+ N
Sbjct: 72 SNKVKYMAEYVNLVHGIDRLKLIKELNKQAQKHDRTINCLLQIKIAEEDTKFGMDINDAE 131
Query: 142 ---TKDFVILCRQKY-QLNVEGLMCIPPAMGNP----------KPHFYLLSEIARECKLT 187
KDF ++ Y +NV G M + + K HF LS+ K+
Sbjct: 132 AILNKDF----KKTYPNVNVVGFMGMATFTNDEEQVQREFKTLKSHFDRLSKDHNSLKI- 186
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D++LAI G+T VRIGS IFGER
Sbjct: 187 -LSMGMSGDYKLAITEGSTMVRIGSAIFGER 216
>gi|300718247|ref|YP_003743050.1| hypothetical protein [Erwinia billingiae Eb661]
gi|299064083|emb|CAX61203.1| Conserved uncharacterized protein [Erwinia billingiae Eb661]
Length = 235
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 110/232 (47%), Gaps = 23/232 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +++I +A R ++L+AVSK + A++ GQ F EN +QE
Sbjct: 3 SIQHNLQQVRERISAAAAKCGRDPAEITLLAVSKTKPQSAVEEAIAAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + L EW FIG LQSNK + FD TV R K A+ L+ +
Sbjct: 63 VDKILALGNSALEW----HFIGPLQSNKSRLVAENFDWCHTVDRLKIATRLNEQRPADLP 118
Query: 119 FLPVYIQVNTGYEIQKSGIM----PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
L V IQ+N E KSGIM K+ +L R L + GLM IP
Sbjct: 119 SLNVLIQINISDENSKSGIMLEALSELAKEIALLPR----LTLRGLMAIPAPEAEYSRQL 174
Query: 175 YLLSEIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++A K LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 175 AVCQQMAEAFNALKKDYPAVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGAR 226
>gi|15615113|ref|NP_243416.1| hypothetical protein BH2550 [Bacillus halodurans C-125]
gi|10175170|dbj|BAB06269.1| BH2550 [Bacillus halodurans C-125]
Length = 228
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 18/229 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++L+ ++++ + A R D V ++AV+K V + R AL G EN+++
Sbjct: 1 MSVKDQLKQIQEQMNEACERAGRNPDDVHIIAVTKYVSEARTREALEAGITHIGENRVEG 60
Query: 61 A--KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K++ P W FIGSLQS KV ++++ FD + ++ R A + + +
Sbjct: 61 GVEKRRAFPNEGTW----HFIGSLQSKKVKKMIADFDYLHSLDRLSLAKEID-RRLPDGQ 115
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L ++QVN E KSG+ P + F+ + + V GLM + P + +P+ ++
Sbjct: 116 ALNCFVQVNVSGEQSKSGLKPEEVLPFIEELQTYPSIRVVGLMTMAPFVEDPEDTRWVFR 175
Query: 179 EIAR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
E+ ++LSMGM+ DF +AI GAT VRIG+ + G
Sbjct: 176 ELRHLRDEVQAKRFNHAPCSELSMGMSNDFIVAIEEGATFVRIGTALVG 224
>gi|91212333|ref|YP_542319.1| hypothetical protein UTI89_C3340 [Escherichia coli UTI89]
gi|110643100|ref|YP_670830.1| hypothetical protein ECP_2945 [Escherichia coli 536]
gi|117625178|ref|YP_854166.1| hypothetical protein APECO1_3570 [Escherichia coli APEC O1]
gi|191171913|ref|ZP_03033459.1| alanine racemase family [Escherichia coli F11]
gi|194436734|ref|ZP_03068834.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli 101-1]
gi|218559942|ref|YP_002392855.1| enzyme [Escherichia coli S88]
gi|237706397|ref|ZP_04536878.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|300995468|ref|ZP_07181116.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 200-1]
gi|331659086|ref|ZP_08360028.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli TA206]
gi|91073907|gb|ABE08788.1| hypothetical protein UTI89_C3340 [Escherichia coli UTI89]
gi|110344692|gb|ABG70929.1| hypothetical protein YggS [Escherichia coli 536]
gi|115514302|gb|ABJ02377.1| conserved hypothetical protein [Escherichia coli APEC O1]
gi|190907948|gb|EDV67541.1| alanine racemase family [Escherichia coli F11]
gi|194424216|gb|EDX40203.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli 101-1]
gi|218366711|emb|CAR04468.1| putative enzyme [Escherichia coli S88]
gi|226899437|gb|EEH85696.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|294490236|gb|ADE88992.1| alanine racemase family [Escherichia coli IHE3034]
gi|300304830|gb|EFJ59350.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 200-1]
gi|307625475|gb|ADN69779.1| putative enzyme [Escherichia coli UM146]
gi|315289501|gb|EFU48896.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 110-3]
gi|315295640|gb|EFU54963.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 16-3]
gi|323951611|gb|EGB47486.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
H252]
gi|323957325|gb|EGB53047.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
H263]
gi|323960756|gb|EGB56377.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
H489]
gi|324011798|gb|EGB81017.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 60-1]
gi|331053668|gb|EGI25697.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli TA206]
Length = 234
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 111/235 (47%), Gaps = 26/235 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRK------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K ++ EW FIG LQSNK + FD T+ R + A+ L+ +
Sbjct: 63 VDKIRHFQELSVTGLEW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPA 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V IQ+N E KSGI + + + +L + GLM IP P+ +
Sbjct: 119 ELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPA----PESEYV 174
Query: 176 LLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 175 RQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|312963622|ref|ZP_07778103.1| protein of unknown function UPF0001 [Pseudomonas fluorescens WH6]
gi|311282131|gb|EFQ60731.1| protein of unknown function UPF0001 [Pseudomonas fluorescens WH6]
Length = 228
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 106/223 (47%), Gaps = 8/223 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + + ++I +A +R +S+ L+AVSK ++ +R A + G F EN LQEA
Sbjct: 3 TIADNIGQVSRRIRAAADAVQRDANSIHLLAVSKTKPAQAVREAYAAGMRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + + FIG +QSNK I F + +V R K A LS + L
Sbjct: 63 LGKQAEL-TDLPLSWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPADLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ IQVN E KSG P +L + GLM IP + + +
Sbjct: 122 ICIQVNVSGEASKSGCTPADLPALANAISALPRLKLRGLMAIPEPTEDRAEQDAAFATV- 180
Query: 182 RECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
RE + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 181 RELQAGLNLPLDTLSMGMSHDLESAIAQGATWVRIGTALFGAR 223
>gi|187478097|ref|YP_786121.1| hypothetical protein BAV1600 [Bordetella avium 197N]
gi|115422683|emb|CAJ49210.1| conserved hypothetical protein [Bordetella avium 197N]
Length = 275
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 104/225 (46%), Gaps = 11/225 (4%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L + +I+ + R V L+ VSK +R+A + G +F ENK+QEA K
Sbjct: 31 HNLAAVQARIDAACARVGRKPSEVRLLPVSKTKPEASLRLAYAAGCRMFGENKVQEAYGK 90
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
W ++ D+ IG LQ+NK + + + + A L + + R L V++
Sbjct: 91 WEGMQDLPDLGWSVIGHLQTNKAKLVARFAAEFQALDSLRLAEALERRLQAEGRALDVFV 150
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP--PAMGNPKPHFYLLSEIAR 182
QVNT E K G+ P + F+ L V GLM + A G ++ R
Sbjct: 151 QVNTSGEPSKYGLAPAEVAGFLRQLSAFSALRVRGLMTLALFSAEGERVRQCFMQLRALR 210
Query: 183 E---------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E L +LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 211 ERLRQQAPGAVSLDELSMGMSGDFEIAIEEGATVVRVGQAIFGAR 255
>gi|333000453|gb|EGK20034.1| hypothetical protein SFK272_3774 [Shigella flexneri K-272]
gi|333015291|gb|EGK34633.1| hypothetical protein SFK227_3747 [Shigella flexneri K-227]
Length = 234
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 111/235 (47%), Gaps = 26/235 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRK------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K ++ EW FIG LQSNK + FD T+ R + A+ L+ +
Sbjct: 63 VDKIRHFQELGVTGLEW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPA 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V IQ+N E KSGI + + + +L + GLM IP P+ +
Sbjct: 119 ELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPA----PESEYV 174
Query: 176 LLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 175 RQFEVARQMAVAFAVLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|326773558|ref|ZP_08232841.1| pyridoxal phosphate enzyme, YggS family [Actinomyces viscosus C505]
gi|326636788|gb|EGE37691.1| pyridoxal phosphate enzyme, YggS family [Actinomyces viscosus C505]
Length = 266
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 106/223 (47%), Gaps = 12/223 (5%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + +I+ +A A R + L+ VSK V +++R A + G ENK+QEA++K
Sbjct: 31 NLDAVRARIDAAAKRAGRDTAEIRLLPVSKTVPEERLRTAFAAGITQMGENKVQEAQRKS 90
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L + + IG LQ+NK + + D + + + A L + R L VY+Q
Sbjct: 91 ENL-ADLGISWSVIGHLQTNKAKNVAAFADEFQALDSLRLAGALDRRLQAAGRGLDVYVQ 149
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
VN+ E K G+ P+ F+ L V GLM + + + F ++ + R
Sbjct: 150 VNSSGEPSKFGLEPDDVAGFLAALPVYSSLRVRGLMTLAANTSDEARVRECFNVMRRL-R 208
Query: 183 ECKLTK-------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ DFE AI G+T VR+G IFG R
Sbjct: 209 DAALEAGTVGDGLLSMGMSGDFEAAIEGGSTCVRVGQAIFGAR 251
>gi|1730919|sp|P52055|YPI1_VIBAL RecName: Full=UPF0001 protein in pilT-proC intergenic region;
AltName: Full=ORF1
gi|801880|dbj|BAA09062.1| FkuA [Vibrio alginolyticus]
Length = 233
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 103/207 (49%), Gaps = 11/207 (5%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD---VQLRFI 79
R +SV L+AVSK + I A GQ F EN +QE K + + ++ FI
Sbjct: 24 RTPESVQLLAVSKTKPVEAILEAYQAGQTAFGENYVQEGVSKVQHFAEHYPDNRIEWHFI 83
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G +QSNK + FD + T+ R K A L+ + + + L V IQVNT E KSG+
Sbjct: 84 GPIQSNKSRLVAEHFDWVHTIDRTKIAQRLNDQRPSELKPLQVLIQVNTSGEASKSGVTE 143
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSM 191
+ + L + L + GLM IP + + + + ++ A+ ++ LSM
Sbjct: 144 AEVFELAELISRLPNLTLRGLMSIPANVSDYESQLHEFQKLATLKQTLEAQFPEIDTLSM 203
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D AI +G+T VRIG+ IFG R
Sbjct: 204 GMSGDMTAAIEAGSTMVRIGTAIFGAR 230
>gi|284922894|emb|CBG35983.1| putative amino acid racemase [Escherichia coli 042]
Length = 234
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 111/235 (47%), Gaps = 26/235 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATSCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRK------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K ++ EW FIG LQSNK + FD T+ R + A+ L+ +
Sbjct: 63 VDKIRHFQELGVTGLEW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPA 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V IQ+N E KSGI + + + +L + GLM IP P+ +
Sbjct: 119 ELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPA----PESEYV 174
Query: 176 LLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 175 RQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|145629031|ref|ZP_01784830.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
22.1-21]
gi|144978534|gb|EDJ88257.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
22.1-21]
Length = 236
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 108/226 (47%), Gaps = 11/226 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQGVNLEWHFIGPLQSNKTRLVAEHFDWMQTLDRVKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V IQ+N E KSGI P + L + GLM IP N F
Sbjct: 121 LNVLIQINISDEESKSGIQPGEMLTLAKHIENLPHLCLRGLMAIPAPTDNIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+S++ + K + LSMGMT D AI G+T VRIG+ IF
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIF 226
>gi|219848763|ref|YP_002463196.1| alanine racemase domain-containing protein [Chloroflexus aggregans
DSM 9485]
gi|219543022|gb|ACL24760.1| alanine racemase domain protein [Chloroflexus aggregans DSM 9485]
Length = 242
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 118/244 (48%), Gaps = 33/244 (13%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L +L +++I +A A R D + L+AVSK + + A++ G EN++QEA
Sbjct: 4 TLSRRLAAVREQIAVAAAAAGRQVDEIQLIAVSKTHPPEVVAAAVAAGVTDLGENRVQEA 63
Query: 62 KKKWIPL-----RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
++K L R W IG LQ NK VSLFD+I +V + A L +
Sbjct: 64 QQKIAALHHLQPRPRW----HLIGHLQRNKAKLAVSLFDLIHSVDSLRLAEALDRHAREL 119
Query: 117 SRFLPVYIQVNTGYEIQKSGI-MPNQ-TKDFV----------ILCRQKYQLNVEGLMCIP 164
R +P+ +QVN E K G +P T D IL L V GLM I
Sbjct: 120 DRRMPILLQVNVSGEASKEGFWLPGGITNDAAYRELLPAIEAILALPA--LEVCGLMTIA 177
Query: 165 PAMGNP---KPHFYLL----SEIAR---ECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
P + +P +P+F L ++AR + +LSMGM+ D AIA GAT VRIG I
Sbjct: 178 PIVDHPDAARPYFAALRALRDDLARRYPQASWRELSMGMSDDLSAAIAEGATMVRIGRAI 237
Query: 215 FGER 218
FGER
Sbjct: 238 FGER 241
>gi|294788029|ref|ZP_06753273.1| pyridoxal phosphate enzyme, YggS family [Simonsiella muelleri ATCC
29453]
gi|294484322|gb|EFG32005.1| pyridoxal phosphate enzyme, YggS family [Simonsiella muelleri ATCC
29453]
Length = 227
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 109/226 (48%), Gaps = 8/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + Q Q+I + A+R SV+L+AVSK + IR GQ F EN +QE
Sbjct: 2 MKLEHNRQSVLQQIRIAEQNAQRVSGSVNLIAVSKTFPAADIRQLYQHGQRDFGENYIQE 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K I L ++Q IG +QSNK + + T+ R K A L + L
Sbjct: 62 WQEKTIQLMDCNEIQWHIIGHVQSNKTRAVAEHAHWLHTLDRAKIAERLHEQRPDSLPPL 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+ I++N E K GI P++ +L + GLMC+ A + F +
Sbjct: 122 NICIEINIANERTKHGIQPDELLPLARTVLSLSKLRLRGLMCVAQANATETELRQQFNRM 181
Query: 178 SEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E+ R+ + LSMGM+ D +AI GAT VR+G+ IFG+R
Sbjct: 182 AELLRQLQTIAPNADTLSMGMSGDMNVAIECGATMVRVGTAIFGKR 227
>gi|288933579|ref|YP_003437638.1| alanine racemase [Klebsiella variicola At-22]
gi|290511354|ref|ZP_06550723.1| YggS family pyridoxal phosphate enzyme [Klebsiella sp. 1_1_55]
gi|288888308|gb|ADC56626.1| alanine racemase domain protein [Klebsiella variicola At-22]
gi|289776347|gb|EFD84346.1| YggS family pyridoxal phosphate enzyme [Klebsiella sp. 1_1_55]
Length = 233
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 106/227 (46%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISGAAARCGRAPEEVTLLAVSKTKPASAIEEAIVAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K ++ +Q FIG LQSNK + FD TV R K A+ L+ +
Sbjct: 63 VEKINHFQQAGISGLQWHFIGPLQSNKSRLVAEHFDWCHTVDRLKIATRLNEQRPAHLPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + L + GLM IP F + +
Sbjct: 123 LKVLIQINISDEQSKSGIPLEALDGLAAEIAELPHLELRGLMAIPAPESEYVRQFAVAQQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFARLKTRYPTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|297559878|ref|YP_003678852.1| alanine racemase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296844326|gb|ADH66346.1| alanine racemase domain protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 242
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 96/209 (45%), Gaps = 12/209 (5%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R D VSLVAV+K + +R+ S G EN+ QEA K + + F+G
Sbjct: 30 AGRSPDEVSLVAVTKTHPASDVRILASLGVTDVGENRDQEAAPKAAET-ADLGLTWHFVG 88
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------TGYEIQK 134
LQ+NK + S DV+ +V R + A L R L +Q+N G +
Sbjct: 89 QLQTNKARSVASYADVVHSVDRARLARALGERAAAAGRSLTCLVQINLDEDSRAGVIGPR 148
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA-----RECKLTKL 189
G+ P + + L + G+M + P G+P F L E+A R + T +
Sbjct: 149 GGVDPGDALELAARIEEHEALVLGGVMAVAPREGDPSAAFARLQEVAARIRDRYPRATVV 208
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
S GM+ D E A+ GAT +R+G+ + G R
Sbjct: 209 SAGMSGDLEAAVERGATHLRLGTALLGNR 237
>gi|187930942|ref|YP_001890926.1| hypothetical protein FTM_0034 [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187711851|gb|ACD30148.1| conserved hypothetical protein [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 222
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 103/203 (50%), Gaps = 16/203 (7%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSNKVS 88
L+AVSK KI GQ+ F EN QE ++K L W FIGSLQS K+
Sbjct: 24 LLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLPHLRW----HFIGSLQSRKIK 79
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV-- 146
IV I++V + + + ++ + V++Q+N +I KSG Q ++ V
Sbjct: 80 HIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVVAS 139
Query: 147 -ILCRQKYQLNVEGLMCIPPAMGNPKP------HFY--LLSEIARECKLTKLSMGMTRDF 197
+ + L + GLMCIP P+ HF+ + S + + +L++LSMGM+ D+
Sbjct: 140 IMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNSRLNDDLRLSRLSMGMSADY 199
Query: 198 ELAIASGATSVRIGSGIFGERPC 220
LAI G+T VR+GS +FG R
Sbjct: 200 RLAIQYGSTDVRVGSSLFGARAT 222
>gi|227888506|ref|ZP_04006311.1| alanine racemase family protein [Escherichia coli 83972]
gi|222034646|emb|CAP77388.1| UPF0001 protein yggS [Escherichia coli LF82]
gi|227834775|gb|EEJ45241.1| alanine racemase family protein [Escherichia coli 83972]
gi|281179960|dbj|BAI56290.1| conserved hypothetical protein [Escherichia coli SE15]
gi|307554933|gb|ADN47708.1| alanine racemase family protein [Escherichia coli ABU 83972]
Length = 234
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 112/232 (48%), Gaps = 20/232 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K I +E V + FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDK-IRYFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELP 121
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQ+N E KSGI + + + +L + GLM IP P+ +
Sbjct: 122 PLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPA----PESEYVRQF 177
Query: 179 EIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 178 EVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|303229239|ref|ZP_07316035.1| pyridoxal phosphate enzyme, YggS family [Veillonella atypica
ACS-134-V-Col7a]
gi|302516094|gb|EFL58040.1| pyridoxal phosphate enzyme, YggS family [Veillonella atypica
ACS-134-V-Col7a]
Length = 228
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 99/203 (48%), Gaps = 11/203 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
D+ LVAV+K + G EN++QEAK+K + L + IG LQ N
Sbjct: 24 DTALLVAVTKNHPVTAVEEVARLGCTHVGENRVQEAKEKQM-LYTGPKLVWHLIGHLQVN 82
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV + V +FD+I +V +K + K + + +QVN E KSG+ D
Sbjct: 83 KVRQAVPMFDLIHSVDSKKLLDEIEKVAAKHDKVQDILLQVNVAREASKSGMSVEDFPDI 142
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-------LTKLSMGMTR 195
+ + V+GLMC+ P NP +P F + + + K + LSMGMT
Sbjct: 143 RDYAKTLPHVRVKGLMCMAPFFENPEDARPIFRVAHALYEDMKGYFPDGDIQYLSMGMTH 202
Query: 196 DFELAIASGATSVRIGSGIFGER 218
DFE+A+ GA VR+G+ IFGER
Sbjct: 203 DFEIALQEGANIVRVGTAIFGER 225
>gi|188493150|ref|ZP_03000420.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli 53638]
gi|188488349|gb|EDU63452.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli 53638]
Length = 234
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 111/235 (47%), Gaps = 26/235 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDTGQRQFGENYVQEG 62
Query: 62 KKKWIPLRK------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K ++ EW FIG LQSNK + FD T+ R + A+ L+ +
Sbjct: 63 VDKIRHFQELGVTGLEW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPA 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V IQ+N E KSGI + + + +L + GLM IP P+ +
Sbjct: 119 ELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPA----PESEYV 174
Query: 176 LLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 175 RQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|38234316|ref|NP_940083.1| hypothetical protein DIP1745 [Corynebacterium diphtheriae NCTC
13129]
gi|38200579|emb|CAE50274.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length = 221
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 111/220 (50%), Gaps = 20/220 (9%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AK 62
+ Q+ +KI +A + R + L+AVSK ++ A+ G +F EN+ QE K
Sbjct: 12 TRYQIVSEKIAAAAQRSGRKPSDIRLIAVSKNHPVAAVQEAMDAGVTVFGENRPQELVEK 71
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ IP W IG LQ NK +IV + + A L + Q L V
Sbjct: 72 AQAIP-NAYWCA----IGRLQRNKAKDIVRYAQEFHALDSLRLAQALDQRLDHQ---LDV 123
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-----KPHFYLL 177
++QVNT +E QK GI P++ + F+ Q L+V GLM + A +P + F L
Sbjct: 124 FVQVNTSHEEQKGGIAPSEVEPFLAELSQFSHLHVRGLMTM--ARNDPCERVVRASFSEL 181
Query: 178 SEIARECKLT--KLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ R+ L +LSMGM+ DFE AI GATSVR+GS +F
Sbjct: 182 REL-RDALLPHGELSMGMSGDFEWAIEEGATSVRVGSALF 220
>gi|190573115|ref|YP_001970960.1| hypothetical protein Smlt1088 [Stenotrophomonas maltophilia K279a]
gi|190011037|emb|CAQ44646.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
Length = 225
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/218 (33%), Positives = 102/218 (46%), Gaps = 17/218 (7%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-- 70
+ +A A RP L+AVSK ++ + + GQ F EN +QEA K L+
Sbjct: 11 NLHAAAEAAGRPDPR--LLAVSKTQPAESVAALAAQGQHAFGENYVQEALAKMQALQHLA 68
Query: 71 -EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
EW IG LQSNK + S FD +++V R K + L+ L V IQVN
Sbjct: 69 LEW----HLIGHLQSNKAEAVASHFDWVQSVDRPKLVTALARHRPAARGPLNVLIQVNID 124
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI-----A 181
E K G P + + L + GLM IP P + F + + A
Sbjct: 125 DESSKHGCAPEEVDALAAAIAAEPTLRLRGLMAIPAPWPEAERRRDAFVRMRTLFQSLAA 184
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ ++ LSMGM+ D+ AIA GAT VRIG+ +FG RP
Sbjct: 185 QHAQIDTLSMGMSSDYAEAIAEGATLVRIGTALFGARP 222
>gi|330946139|gb|EGH47377.1| hypothetical protein PSYPI_35980 [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 210
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 95/196 (48%), Gaps = 10/196 (5%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL--RFIGSLQS 84
SV L+AVSK + +R A + G F EN LQEA K + L D+ L FIG +QS
Sbjct: 6 SVGLLAVSKTKPASDLREAYTAGLRDFGENYLQEALGKQLELS---DLPLCWHFIGPIQS 62
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK I FD + +V R K A LS + + L + IQVN E KSG P
Sbjct: 63 NKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEPLNICIQVNVSGEASKSGCTPQDLPA 122
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIARECK--LTKLSMGMTRDFEL 199
+L + GLM IP +P F + + + L LSMGM+ D E
Sbjct: 123 LAAAIIALPRLRLRGLMAIPEPTDDPAAQDASFAAVRTLQEQLNLPLDTLSMGMSHDLEA 182
Query: 200 AIASGATSVRIGSGIF 215
AIA GAT VRIG+ +F
Sbjct: 183 AIAQGATWVRIGTALF 198
>gi|260642854|ref|ZP_05417592.2| pyridoxal phosphate enzyme, YggS family [Bacteroides finegoldii DSM
17565]
gi|260620282|gb|EEX43153.1| pyridoxal phosphate enzyme, YggS family [Bacteroides finegoldii DSM
17565]
Length = 226
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 111/214 (51%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+LA+ P+ V LVAVSK ++ I A GQ IF E+K+QE K+ L K D++ F
Sbjct: 12 VLAELPQ-GVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQEMTAKYESLPK--DIEWHF 68
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQSNK+ ++ +I + K + ++ + K R + +Q++ E K G
Sbjct: 69 IGHLQSNKIKYMIPYVAMIHGIDTYKLLAEVNKQAGKAGRTVNCLLQIHVAQEETKFGFS 128
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKP---HFYLLSEIARECK-------- 185
P + ++ + K +V GLM + N + F LLS + +E K
Sbjct: 129 PEECREMLDAGEWKALAHVRICGLMGMASNTDNIEQINGEFRLLSSLFKEIKENWFADSD 188
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AIASG+T VR+GS IFGER
Sbjct: 189 VFRELSMGMSHDYHEAIASGSTLVRVGSKIFGER 222
>gi|39935862|ref|NP_948138.1| hypothetical protein RPA2795 [Rhodopseudomonas palustris CGA009]
gi|39649716|emb|CAE28237.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
CGA009]
Length = 260
Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +++I + R V L+ V+K V + + A + G F ENKLQEA+ K
Sbjct: 26 NLTSVQERIAAACHRCGRSAGEVRLLPVTKTVPAGVLLRAYAAGISEFGENKLQEARDKR 85
Query: 66 -----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+P+R W + IG LQ+NKV +V + + A L+ + + R L
Sbjct: 86 DILADLPIR--WSI----IGHLQTNKVKYLVRFAAEFHALDSPRLADELNRRLDAEGRDL 139
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
V++QVNT E K G+ P F+ +L GLM + G + F LL
Sbjct: 140 DVFVQVNTSGEASKYGLAPCDLVPFIERLSDYPRLKPRGLMTLAIFSAETGRVRGCFRLL 199
Query: 178 SEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E+ LT+LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 200 RELRDRAIRVHPDLTELSMGMSGDFEIAIEEGATVVRVGQAIFGARP 246
>gi|71275400|ref|ZP_00651686.1| Protein of unknown function UPF0001 [Xylella fastidiosa Dixon]
gi|71898572|ref|ZP_00680743.1| Protein of unknown function UPF0001 [Xylella fastidiosa Ann-1]
gi|170730375|ref|YP_001775808.1| hypothetical protein Xfasm12_1237 [Xylella fastidiosa M12]
gi|71163700|gb|EAO13416.1| Protein of unknown function UPF0001 [Xylella fastidiosa Dixon]
gi|71731696|gb|EAO33756.1| Protein of unknown function UPF0001 [Xylella fastidiosa Ann-1]
gi|167965168|gb|ACA12178.1| conserved hypothetical protein [Xylella fastidiosa M12]
Length = 261
Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 102/211 (48%), Gaps = 17/211 (8%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81
R SV+L+ VSK VD IR++ G ENK Q+A KW + D+ IG
Sbjct: 43 NRDPSSVTLLPVSKTVDEVHIRLSYEAGCRKLGENKAQDAYHKWEAMSDLTDLHWSVIGH 102
Query: 82 LQSNK---VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
LQ+NK V+ S F ++++ + A L + + R L V IQVNT E K G+
Sbjct: 103 LQTNKAKLVARFASEFQALDSL---RVAEALERRLQIEGRSLDVLIQVNTSGETNKYGLP 159
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK------PHFYLLSEIAREC-----KLT 187
P + FV L V GLM + G+ +L + ++ +T
Sbjct: 160 PEEVVRFVQALSAYPALRVRGLMTLALLSGDTSRVRQCFTQLRILRDRIQQASPQGHHIT 219
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D E+AI GAT+VR+G I+G R
Sbjct: 220 ELSMGMSGDLEIAIEEGATAVRVGQAIYGAR 250
>gi|260441618|ref|ZP_05795434.1| hypothetical protein NgonDG_11132 [Neisseria gonorrhoeae DGI2]
gi|291044992|ref|ZP_06570701.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|291011886|gb|EFE03882.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
Length = 228
Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 99/206 (48%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AVSK S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 ADREPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V ++VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTAVRLSRQRRSLMPPLQVCVEVNIAGEAAKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY----LLSEI-ARECKLTKLSMG 192
+ + + L V GLMC+ A + K F LL+++ A K LSMG
Sbjct: 142 EAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQTMQKLLADLNAAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|327482661|gb|AEA85971.1| TIM-barrel fold family protein [Pseudomonas stutzeri DSM 4166]
Length = 201
Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 99/196 (50%), Gaps = 6/196 (3%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
+ L+AVSK + IR A + G F EN LQEA K L + + FIG +QSNK
Sbjct: 1 MGLLAVSKTQPAAAIRDAFAAGLRDFGENYLQEALDKQAEL-DDLPLTWHFIGPIQSNKT 59
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
I FD + +V R K A LS + L + +QVN E KSG P + +
Sbjct: 60 KAIAEHFDWVHSVDRLKIAQRLSDQRPAALPPLNICLQVNVSGEASKSGCAPQEVQQLAR 119
Query: 148 LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAREC--KLTKLSMGMTRDFELAIA 202
+L + GLMCIP +P + F L ++ E L LSMGM++D E AIA
Sbjct: 120 AITALPRLRLRGLMCIPAPSEDPAEQRAAFARLRQLRDELALDLDTLSMGMSQDLEAAIA 179
Query: 203 SGATSVRIGSGIFGER 218
GAT VRIG+ +FG R
Sbjct: 180 EGATWVRIGTALFGAR 195
>gi|119503505|ref|ZP_01625588.1| hypothetical protein MGP2080_03160 [marine gamma proteobacterium
HTCC2080]
gi|119460567|gb|EAW41659.1| hypothetical protein MGP2080_03160 [marine gamma proteobacterium
HTCC2080]
Length = 228
Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 110/226 (48%), Gaps = 9/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+++ L ++I + LA R SVSL+AVSK + IR A GQ F EN QE
Sbjct: 4 INVATNLHRVWRRIGEAEQLANRHSGSVSLLAVSKTKPDRYIRAAWEAGQRAFGENYAQE 63
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++K L + ++ FIG +QSNK + + ++ R K A LS + + L
Sbjct: 64 AEEKARRL-DDLTIEWHFIGPIQSNKTRGLAETMAWVHSIDRLKIARRLSDQRPQHLPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ +QV E KSGI P++ + L++ GLM IP A + + ++
Sbjct: 123 NLCLQVKLSDEPSKSGIAPSEIPALAAQITELPNLSLRGLMAIPAATSDYQQQRMAFKQL 182
Query: 181 AREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ LSMGM+ D E A+ G+T VR+G+ IFG R
Sbjct: 183 QTQLFELQKQHPEVDTLSMGMSGDLEAAVVEGSTLVRVGTDIFGAR 228
>gi|254230227|ref|ZP_04923619.1| conserved hypothetical protein [Vibrio sp. Ex25]
gi|262393230|ref|YP_003285084.1| hypothetical protein VEA_002457 [Vibrio sp. Ex25]
gi|151937259|gb|EDN56125.1| conserved hypothetical protein [Vibrio sp. Ex25]
gi|262336824|gb|ACY50619.1| hypothetical protein VEA_002457 [Vibrio sp. Ex25]
Length = 233
Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 103/207 (49%), Gaps = 11/207 (5%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD---VQLRFI 79
R +SV L+AVSK + I A GQ F EN +QE K + + ++ FI
Sbjct: 24 RTPESVQLLAVSKTKPVEAILEAHQAGQTAFGENYVQEGVSKVQHFAEHYPDNRIEWHFI 83
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G +QSNK + FD + T+ R K A L+ + + + L V IQVNT E KSG+
Sbjct: 84 GPIQSNKSRLVAEHFDWVHTIDRTKIAQRLNDQRPSELKPLQVLIQVNTSGEASKSGVTE 143
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSM 191
+ + L + L + GLM IP + + + + ++ A+ ++ LSM
Sbjct: 144 AEVFELAELISRLPNLTLRGLMSIPANVSDYESQLHEFQKLATLKQTLEAQFPEIDTLSM 203
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D AI +G+T VRIG+ IFG R
Sbjct: 204 GMSGDMTAAIEAGSTMVRIGTAIFGAR 230
>gi|332531595|ref|ZP_08407492.1| alanine racemase domain protein [Hylemonella gracilis ATCC 19624]
gi|332038958|gb|EGI75387.1| alanine racemase domain protein [Hylemonella gracilis ATCC 19624]
Length = 255
Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 115/234 (49%), Gaps = 21/234 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L+ + +I + A R SV L+AVSK + +R A G F EN +QEA
Sbjct: 10 AFSSALRAVQARINAACDAAGRDPASVRLLAVSKTFGPEAVRAAHQAGLTAFGENYIQEA 69
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + ++ IG +QSNK + F +TV R K A LS + + L
Sbjct: 70 VAKTAAL-ADLPLEWHCIGPIQSNKTRPVAEHFAWAQTVDRFKIAQRLSEQRPAELPPLQ 128
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
+ +QVN K+GI P++ + V+ R+ +L + GLMCIP +P+P + +
Sbjct: 129 ICLQVNVDGGPTKAGIAPHELSELVLAVRRLPRLRLRGLMCIP----DPQPDAAAMQAVF 184
Query: 181 ARECKL---------------TKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
AR L LSMGM+ D E AIA+G+T VRIGS +FG RP
Sbjct: 185 ARARTLFDDLRAGWDGPDPLPDTLSMGMSADLEAAIAAGSTLVRIGSALFGARP 238
>gi|194337101|ref|YP_002018895.1| alanine racemase domain protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309578|gb|ACF44278.1| alanine racemase domain protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 229
Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +++I + I A R V L+AVSK + I+ A G ++F E+ +QE
Sbjct: 3 SIAANIETIREQIHAACIEAGRDPAGVRLIAVSKTHPASLIKEAFDAGHIVFGESYVQEF 62
Query: 62 KKKW-IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K PL + ++ FIG LQSNK+ I+ +I + + TA LS ++ + +
Sbjct: 63 LEKCEDPLLAQLGIEWHFIGHLQSNKIRSIIGKVSLIHGIDKLSTAEELSKRALRNNLQV 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE 179
++VNT E K G+ P + + + GLM I P + F LL
Sbjct: 123 DYLLEVNTSGEASKYGMSPEELLSLAESLFTLPNITLRGLMTIASPDRVLAQQEFRLLRT 182
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ KLT+LSMGM+ DF AI GAT +R+G+ IFG R
Sbjct: 183 LLDALKPISPDPSKLTELSMGMSGDFREAIHEGATMIRVGTAIFGWR 229
>gi|306812145|ref|ZP_07446343.1| hypothetical protein ECNC101_09539 [Escherichia coli NC101]
gi|305854183|gb|EFM54621.1| hypothetical protein ECNC101_09539 [Escherichia coli NC101]
Length = 234
Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 111/235 (47%), Gaps = 26/235 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIVEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRK------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K ++ EW FIG LQSNK + FD T+ R + A+ L+ +
Sbjct: 63 VDKIRHFQELGVTGLEW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPA 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V IQ+N E KSGI + + + +L + GLM IP P+ +
Sbjct: 119 ELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPA----PESEYV 174
Query: 176 LLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 175 RQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|85712848|ref|ZP_01043890.1| Predicted enzyme with a TIM-barrel fold [Idiomarina baltica OS145]
gi|85693312|gb|EAQ31268.1| Predicted enzyme with a TIM-barrel fold [Idiomarina baltica OS145]
Length = 231
Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 104/202 (51%), Gaps = 9/202 (4%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
++SV L+AVSK ++ IRVA GQ FAEN +QE K L + D+ FIG LQS
Sbjct: 30 RESVRLLAVSKKHSAEAIRVAYEAGQREFAENYVQEGVAKVQQL-QALDITWHFIGPLQS 88
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK + FD ++++ REK A L+ + L V +QVN + KSG+ +
Sbjct: 89 NKTKLVAEHFDWVQSIDREKIARRLNDQRSGALPPLNVLLQVNIDNDPNKSGVKKSDINA 148
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIARECK-----LTKLSMGMTRD 196
+ L + G+M I A + K F + E+ ++ + + LSMGM+ D
Sbjct: 149 LAKFVSKCPHLKLRGIMTILEADTDEKQQLDSFTSMRELYQQLQQLHPSVDTLSMGMSGD 208
Query: 197 FELAIASGATSVRIGSGIFGER 218
AI +GA VRIGS IFG+R
Sbjct: 209 MRQAIHAGANMVRIGSAIFGQR 230
>gi|187932582|ref|YP_001886626.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum B
str. Eklund 17B]
gi|187720735|gb|ACD21956.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum B
str. Eklund 17B]
Length = 224
Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 104/209 (49%), Gaps = 13/209 (6%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
PK+ V L+AVSK + ++ A G F ENK+QE K + L K D++ IG LQ
Sbjct: 15 PKN-VELLAVSKTKPIEDLKEAYEAGIRDFGENKVQELVSKEVSLPK--DIRWHLIGKLQ 71
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
+NKV +V +I ++S K + + K + V IQ+N G E KSGI+ +
Sbjct: 72 TNKVKYLVDKVYLIHSLSSIKLLNEIERVFEKNNMVANVLIQINIGREESKSGILKEELP 131
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMG--NPKPHF--------YLLSEIARECKLTKLSMGM 193
D + + +G+M I P N K +F YL R K+ LSMGM
Sbjct: 132 DIIEAIETCDHVLAKGIMVIIPKGDEKNNKKYFKETKEIFDYLKVREYRNIKMEVLSMGM 191
Query: 194 TRDFELAIASGATSVRIGSGIFGERPCQT 222
T DF AI G+T VRIG GIFGER T
Sbjct: 192 THDFNEAIEEGSTLVRIGQGIFGERNYST 220
>gi|148270160|ref|YP_001244620.1| alanine racemase domain-containing protein [Thermotoga petrophila
RKU-1]
gi|170288885|ref|YP_001739123.1| alanine racemase domain-containing protein [Thermotoga sp. RQ2]
gi|281412498|ref|YP_003346577.1| alanine racemase domain protein [Thermotoga naphthophila RKU-10]
gi|147735704|gb|ABQ47044.1| alanine racemase domain protein [Thermotoga petrophila RKU-1]
gi|170176388|gb|ACB09440.1| alanine racemase domain protein [Thermotoga sp. RQ2]
gi|281373601|gb|ADA67163.1| alanine racemase domain protein [Thermotoga naphthophila RKU-10]
Length = 229
Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 12/226 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L L+ +++N+A+ A R V LV SK +++ + G F EN+ Q+
Sbjct: 1 MGLKENLERVLNRMKNAALRANRDPFEVRLVVASKYASVQQMEELVFLGIREFGENRAQD 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK + + + FIG +Q+NKV IV ++I +V RE+ + K +
Sbjct: 61 LVKKSEYFKGK-PIIWHFIGRIQTNKVKYIVPRCELIHSVWREEELKEIEKRAEKLGKIQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
+ ++VN E K+G++ + ++F+ LC++ + V G M + P NP+ F L
Sbjct: 120 KILLEVNVFKEETKAGLLVEEVEEFLKLCQEFPHVEVLGFMTMAPYAENPEEVRWGFRTL 179
Query: 178 SEIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ E KL +LSMGM+ DFE+AI GAT VRIGS IF
Sbjct: 180 RELRDELASRFNGNVKLKELSMGMSNDFEVAIEEGATMVRIGSAIF 225
>gi|59802221|ref|YP_208933.1| hypothetical protein NGO1907 [Neisseria gonorrhoeae FA 1090]
gi|194099840|ref|YP_002002975.1| hypothetical protein NGK_2350 [Neisseria gonorrhoeae NCCP11945]
gi|240013042|ref|ZP_04719955.1| hypothetical protein NgonD_00025 [Neisseria gonorrhoeae DGI18]
gi|240081905|ref|ZP_04726448.1| hypothetical protein NgonF_11448 [Neisseria gonorrhoeae FA19]
gi|240114186|ref|ZP_04728676.1| hypothetical protein NgonM_11571 [Neisseria gonorrhoeae MS11]
gi|240116824|ref|ZP_04730886.1| hypothetical protein NgonPID1_11401 [Neisseria gonorrhoeae PID18]
gi|240122235|ref|ZP_04735197.1| hypothetical protein NgonPI_10825 [Neisseria gonorrhoeae PID24-1]
gi|254494791|ref|ZP_05107962.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268598003|ref|ZP_06132170.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268600258|ref|ZP_06134425.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268602502|ref|ZP_06136669.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|293398056|ref|ZP_06642262.1| YggS family pyridoxal phosphate enzyme [Neisseria gonorrhoeae F62]
gi|59719116|gb|AAW90521.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|193935130|gb|ACF30954.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
gi|226513831|gb|EEH63176.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268551791|gb|EEZ46810.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268584389|gb|EEZ49065.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268586633|gb|EEZ51309.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|291612002|gb|EFF41071.1| YggS family pyridoxal phosphate enzyme [Neisseria gonorrhoeae F62]
gi|317165308|gb|ADV08849.1| hypothetical protein NGTW08_1894 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 228
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 99/206 (48%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AVSK S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGREPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V ++VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTAVRLSRQRRSLMPPLQVCVEVNIAGEAAKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY----LLSEI-ARECKLTKLSMG 192
+ + + L V GLMC+ A + K F LL+++ A K LSMG
Sbjct: 142 EAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQTMQKLLADLNAAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|324997732|ref|ZP_08118844.1| pyridoxal phosphate enzyme, YggS family protein [Pseudonocardia sp.
P1]
Length = 247
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L +++++ + A R +VSL+AV+K V ++ + + G FAEN+ QEA
Sbjct: 13 LKERLGAVRERLDAACRAAGRDPAAVSLLAVTKTVPARDVADLIDLGLAAFAENRAQEAG 72
Query: 63 KKWIP---LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK---- 115
K LR + D + F+G LQ NKV ++ IE+V + A + E+ K
Sbjct: 73 TKVADVARLRPDADARWHFVGGLQRNKVRAVLPWVTRIESVDSPRLARAIDKEVAKARDR 132
Query: 116 --QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP- 172
+S LPV +Q + + + G+ + + L + L + GLM + P +G P+P
Sbjct: 133 GERSGPLPVLVQYSVDGDPDRGGVPDDGLDELTDLVTELPGLELGGLMAVAPLVGEPEPA 192
Query: 173 ----HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R +LS GM+ D E A+ G+T VR+G+ + GER
Sbjct: 193 FATIAAAARRTRERHPGAVELSAGMSADLETAVDHGSTVVRVGTALVGER 242
>gi|21674628|ref|NP_662693.1| hypothetical protein CT1814 [Chlorobium tepidum TLS]
gi|21647829|gb|AAM73035.1| conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 229
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 109/227 (48%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
S+ + L +++I + A R +D V+L+AVSK + IR A GQ F E+ +QE
Sbjct: 3 SISSNLTAVREQIAEACRKAGRREDEVTLIAVSKTKSAAAIREAWDAGQREFGESYVQEF 62
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K P V FIG LQSNKV +IV ++ + + TA LS + +
Sbjct: 63 LEKVEAPELSGLPVSWHFIGHLQSNKVRQIVDKVTMVHGIDKVSTAKELSKRAGQHDLTV 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE 179
++VN E K G P+ C + + GLM I PA + F L +
Sbjct: 123 DYLLEVNVSRESTKYGFSPDSVLQAAEECFALPNVRLRGLMTIASPAPSEARREFAELRQ 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + LT+LSMGM+ DFE AI GAT +RIG+ IFG R
Sbjct: 183 TLDKLRQNAPEPSLLTELSMGMSGDFEEAILEGATMIRIGTAIFGWR 229
>gi|110835530|ref|YP_694389.1| hypothetical protein ABO_2669 [Alcanivorax borkumensis SK2]
gi|110648641|emb|CAL18117.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
Length = 230
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 102/205 (49%), Gaps = 10/205 (4%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R SV L+AVSK + ++ GQ F EN LQEA K LR V FIG +
Sbjct: 25 RDPHSVQLLAVSKTRTADELAKLADQGQRHFGENYLQEALAKIAALRGRGLV-WHFIGPI 83
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
QSNK +I + FD + +V R K A LS + +S L + IQVN E KSG+
Sbjct: 84 QSNKTRDIAAHFDWVHSVDRLKVARRLSEQRPPESAPLNLCIQVNVDDEASKSGVALAGV 143
Query: 143 KDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLSEIARECK-----LTKLSMGMT 194
+ + + GLM IP A GN + F L+ + + L LSMGM+
Sbjct: 144 AELAAAVDALPNIRLRGLMAIPRADNDDGN-RAAFRQLAMTLSQLRNTMPALDTLSMGMS 202
Query: 195 RDFELAIASGATSVRIGSGIFGERP 219
D+ +AI GAT +R+G+ +FG RP
Sbjct: 203 ADYPVAIEEGATVIRLGTALFGPRP 227
>gi|307183253|gb|EFN70122.1| Proline synthetase co-transcribed bacterial-like protein protein
[Camponotus floridanus]
Length = 248
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 114/215 (53%), Gaps = 28/215 (13%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNK 86
LVAVSK+ ++ I A GQ F EN + E +K + L K ++Q FIG+LQ NK
Sbjct: 33 LVAVSKLQSTESILSAYKAGQRHFGENYVNELVEKALNPQILEKCKEIQWHFIGNLQRNK 92
Query: 87 VSEIVSLFD--VIETVSREKTASLLSLEMIKQSRF----LPVYIQVNTGYEIQKSGI--- 137
V++I+S+ + +IE+V EK A LL+ K + L V +QVNT E +K+G
Sbjct: 93 VNKILSVPNLYIIESVGNEKLADLLNNSWPKFRKSDNCKLNVMVQVNTSQEEEKNGCDIV 152
Query: 138 -MPNQTKDFVILCRQKYQLNVEGLMCIP----PAMGNPKPHFYLL--------SEIAREC 184
+ K + C + L GLM I P P+F L +E+A +
Sbjct: 153 EVSTLVKHIINNC---HNLKFMGLMTIGMFGYDITNGPNPYFTCLIKCREKISNELAIDI 209
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
K +LSMGM+ D+E AI G+T+VR+G+ IFG RP
Sbjct: 210 KNIELSMGMSNDYEHAIELGSTNVRVGTAIFGNRP 244
>gi|332976336|gb|EGK13192.1| cell division protein YlmE [Desmospora sp. 8437]
Length = 235
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 108/227 (47%), Gaps = 17/227 (7%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L ++ I+ + A R V+++AV+K VD + R L G E++ QEA KW
Sbjct: 10 RLDQVRENIQKACGRAGRNPAEVNVIAVTKYVDVETTRRVLDVGLTDIGESRAQEAVPKW 69
Query: 66 IPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
L R W FIG LQ NKV +V F + ++ R A L+ + +
Sbjct: 70 EQLGERGVW----HFIGHLQRNKVKAVVGRFTYVHSLDRYSLARELNNRSEALGQPTRCF 125
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
IQVN E K G+ P + DF + L + GLM + P +P +P F L +
Sbjct: 126 IQVNVAGEESKRGLKPEEVIDFAREAAELPWLQLAGLMTMAPFTEDPEEVRPVFRQLRGL 185
Query: 181 ARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+E + L LSMGM+RD+ +A+ GAT VR+GS + G P
Sbjct: 186 QQEIRKLGDSRLDLPHLSMGMSRDYTVAVEEGATFVRLGSVLVGGPP 232
>gi|308069869|ref|YP_003871474.1| hypothetical protein PPE_03116 [Paenibacillus polymyxa E681]
gi|305859148|gb|ADM70936.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 233
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 17/229 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL +++ ++E + + R +D V+++AV+K V + + L EN+ Q+
Sbjct: 1 MSLEERIKEVNARVEAACARSGRSRDEVNVIAVTKYVSAATMTSVLDSDLEHVGENRWQD 60
Query: 61 AKKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
A KW L R W FIG LQ+NKV +++ F I ++ R A L +
Sbjct: 61 AADKWSKLGDRGTW----HFIGHLQTNKVKDVIGKFKFIHSLDRLSLAQELDKKAAALGL 116
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+ ++QVN E K G+ F+ R+ ++V GLM + P +P +P F
Sbjct: 117 RVKAFVQVNISGETSKYGLSSEAVVPFLEQIRELEHVDVIGLMTMAPHEEDPEKTRPVFR 176
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L E+ + LSMGM+ DFE+A+ GAT +R+GS + G
Sbjct: 177 GLRELRDRLNGQALTREPIVHLSMGMSNDFEVAVEEGATWLRLGSVLVG 225
>gi|167762344|ref|ZP_02434471.1| hypothetical protein BACSTE_00698 [Bacteroides stercoris ATCC
43183]
gi|167699987|gb|EDS16566.1| hypothetical protein BACSTE_00698 [Bacteroides stercoris ATCC
43183]
Length = 222
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 111/214 (51%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+L++ P D V LVAVSK ++ I A S GQ +F E+K+QE K+ L K D++ F
Sbjct: 10 VLSELP-DGVRLVAVSKFHPNEAIEEAYSAGQRVFGESKVQEMTAKYESLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK+ IV +I V K + ++ + K R + +Q++ E K G
Sbjct: 67 IGHLQTNKIKYIVPYVTLIHGVDSYKLLTEINRQAAKAGRTVNCLLQLHIAQEESKFGFS 126
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNP---KPHFYLLSEIARECKLT------ 187
++ ++ + K NV GLM + N K F L+ +E K T
Sbjct: 127 FDECREMLAGDEWKKLGNVRICGLMGMATNTDNIEQIKAEFRSLNNFFQEAKATWFSNAE 186
Query: 188 ---KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 187 WFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGER 220
>gi|89255507|ref|YP_512868.1| hypothetical protein FTL_0060 [Francisella tularensis subsp.
holarctica LVS]
gi|167009352|ref|ZP_02274283.1| hypothetical protein Ftulh_01145 [Francisella tularensis subsp.
holarctica FSC200]
gi|167010277|ref|ZP_02275208.1| hypothetical protein Ftulh_06040 [Francisella tularensis subsp.
holarctica FSC200]
gi|254366933|ref|ZP_04982970.1| hypothetical protein FTHG_00094 [Francisella tularensis subsp.
holarctica 257]
gi|89143338|emb|CAJ78501.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica LVS]
gi|134252760|gb|EBA51854.1| hypothetical protein FTHG_00094 [Francisella tularensis subsp.
holarctica 257]
Length = 222
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 103/205 (50%), Gaps = 16/205 (7%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSNK 86
V L+AVSK KI GQ+ F EN QE ++K L W FIGSLQS K
Sbjct: 22 VRLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLPHLRW----HFIGSLQSRK 77
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
+ IV I++V + + + ++ + V++Q+N +I KSG Q ++ V
Sbjct: 78 IKHIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVV 137
Query: 147 ---ILCRQKYQLNVEGLMCIPPAMGNPKP------HFY--LLSEIARECKLTKLSMGMTR 195
+ + L + GLMCIP P+ HF+ + + + KL++LSMGM+
Sbjct: 138 ASIMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNFRLNDDLKLSRLSMGMSA 197
Query: 196 DFELAIASGATSVRIGSGIFGERPC 220
D+ LAI G+T VR+GS +FG R
Sbjct: 198 DYRLAIQYGSTDVRVGSSLFGARAT 222
>gi|261401838|ref|ZP_05987963.1| pyridoxal phosphate enzyme, YggS family [Neisseria lactamica ATCC
23970]
gi|269208020|gb|EEZ74475.1| pyridoxal phosphate enzyme, YggS family [Neisseria lactamica ATCC
23970]
Length = 234
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 99/206 (48%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AVSK S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGRKPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLPDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTARRLSEQRPSSMPPLQVCIEVNIAGEAAKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY----LLSEI-ARECKLTKLSMG 192
+ + + + V GLMC+ A + K F LL+++ A K LSMG
Sbjct: 142 EAVALAVEVAKLPNIVVRGLMCVAKANSSETELKTQFQTMQKLLADLNAAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|168186162|ref|ZP_02620797.1| conserved hypothetical protein [Clostridium botulinum C str.
Eklund]
gi|169295770|gb|EDS77903.1| conserved hypothetical protein [Clostridium botulinum C str.
Eklund]
Length = 223
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 106/215 (49%), Gaps = 14/215 (6%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
EN K +V+L+AVSK +++ A C F ENK+QE K+ K DV
Sbjct: 5 ENVIKFQKELPKNVTLLAVSKTRTLEELEEAYKCNIRDFGENKVQELTYKFDNFHK--DV 62
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
+ IG LQ+NKV IV +I ++ K + + V IQ+N G + K
Sbjct: 63 RWHLIGHLQTNKVKYIVGKVYLIHSLDNVKLLKEIEKRYSSANEIANVLIQINIGRDSNK 122
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-----------KPHFYLLSEIARE 183
SG++ +D + C + + V+GLM + P GN K + +L +++
Sbjct: 123 SGVLLENLQDLIDECEKCKNVKVKGLMTVIPK-GNHDTNREYFIEMKKTYDFLSNKLYNN 181
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K+ +SMGMT D+E A+ G+ VRIG GIFG+R
Sbjct: 182 VKMEFISMGMTGDYEEALEEGSNIVRIGEGIFGKR 216
>gi|156501438|ref|YP_001427502.1| hypothetical protein FTA_0069 [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|290954264|ref|ZP_06558885.1| hypothetical protein FtulhU_08547 [Francisella tularensis subsp.
holarctica URFT1]
gi|295312328|ref|ZP_06803115.1| hypothetical protein FtulhU_08534 [Francisella tularensis subsp.
holarctica URFT1]
gi|156252041|gb|ABU60547.1| hypothetical protein with alanine racemase N-terminal domain
[Francisella tularensis subsp. holarctica FTNF002-00]
Length = 222
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 106/210 (50%), Gaps = 26/210 (12%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSNK 86
V L+AVSK KI GQ+ F EN QE ++K L W FIGSLQS K
Sbjct: 22 VRLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLPHLRW----HFIGSLQSRK 77
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQS-----RFLPVYIQVNTGYEIQKSGIMPNQ 141
+ IV I++V ++ LE I ++ + + V++Q+N +I KSG Q
Sbjct: 78 IKHIVKYASSIQSVE-----NIEHLEKIDKAAGQIVKIVDVFLQINIDDDINKSGFESTQ 132
Query: 142 TKDFV---ILCRQKYQLNVEGLMCIPPAMGNPKP------HFY--LLSEIARECKLTKLS 190
++ V + + L + GLMCIP P+ HF+ + + + KL++LS
Sbjct: 133 LEEVVASIMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNFRLNDDLKLSRLS 192
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERPC 220
MGM+ D+ LAI G+T VR+GS +FG R
Sbjct: 193 MGMSADYRLAIQYGSTDVRVGSSLFGARAT 222
>gi|325068581|ref|ZP_08127254.1| alanine racemase domain protein [Actinomyces oris K20]
Length = 267
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 100/208 (48%), Gaps = 12/208 (5%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R + L+ VSK V +++R A + G ENK+QEA++K L + + IG
Sbjct: 47 AGRDAADIRLLPVSKTVPEERLRTAFAAGITQMGENKVQEAQRKSENL-ADLGISWSVIG 105
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
LQ+NK + + D + + + A L + R L VY+QVN+ E K G+ P+
Sbjct: 106 HLQTNKAKNVAAFADEFQALDSLRLAEALDRRLQAAGRGLDVYVQVNSSGEPSKFGLEPD 165
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLTK-------LS 190
DF+ L V GLM + + + F ++ + R+ L LS
Sbjct: 166 DVADFLAALPAYSSLRVRGLMTLAAHTDDAARVRECFSIMRRL-RDAALQAGTVGDGLLS 224
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGM+ DFE AI G+T VR+G IFG R
Sbjct: 225 MGMSGDFEAAIEGGSTCVRVGQAIFGAR 252
>gi|323142723|ref|ZP_08077440.1| pyridoxal phosphate enzyme, YggS family [Succinatimonas hippei YIT
12066]
gi|322417518|gb|EFY08135.1| pyridoxal phosphate enzyme, YggS family [Succinatimonas hippei YIT
12066]
Length = 241
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 105/209 (50%), Gaps = 12/209 (5%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW---DVQLR 77
A+R ++ ++L+ VSK +I A + G+ F E+ + EAK K IP KE D+
Sbjct: 29 AERSQNDLTLLCVSKTKPISQIIEAYNAGERHFGESYISEAKDK-IPQIKEMGYKDIVWH 87
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
FIG +QSNK I LFD++E+V R K A LS + K L V IQVN E QKSG
Sbjct: 88 FIGPIQSNKTKHIAELFDIVESVDRLKVAQRLSDQRPKNLPPLKVLIQVNISNEEQKSGC 147
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEIARECK-----LTKL 189
+ + QL + GLM + + + F L E K L
Sbjct: 148 SYADLDVLINEVQNLPQLELCGLMGVAEDTADKEIIDKSFVKLHETFNSLKQKLPHFDIL 207
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
S+GMT D +LAI G+T +RIG+ IFG R
Sbjct: 208 SIGMTHDMDLAIKEGSTEIRIGTAIFGAR 236
>gi|317493543|ref|ZP_07951964.1| YggS family pyridoxal phosphate enzyme [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316918486|gb|EFV39824.1| YggS family pyridoxal phosphate enzyme [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 237
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 104/230 (45%), Gaps = 15/230 (6%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK- 64
L+ + +I +A R + V+L+AVSK I ++ GQ F EN +QE K
Sbjct: 8 NLEAVRSRISAAAQDCGRSPEEVTLLAVSKTKPVSDIEETIAAGQRAFGENYVQEGVSKI 67
Query: 65 ----WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
P E ++ FIG LQSNK + FD I TV R K A LS + L
Sbjct: 68 QYFAQTPYADE--LEWHFIGPLQSNKSRLVAEHFDWIHTVDRVKIAQRLSEQRPADKAAL 125
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V IQ+N E KSGI V + L + GLM IP +P K F +
Sbjct: 126 NVLIQINISDESSKSGIDLEALDALVAQVAEMPNLRLRGLMAIPAPEEDPVKQKAVFDRM 185
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ K + LSMGMT D AI +G+T VRIG+ IFG R T
Sbjct: 186 EQAFLALKKQYPHIDTLSMGMTHDMAAAITAGSTMVRIGTAIFGARDYGT 235
>gi|294791193|ref|ZP_06756350.1| pyridoxal phosphate enzyme, YggS family [Scardovia inopinata F0304]
gi|294457664|gb|EFG26018.1| pyridoxal phosphate enzyme, YggS family [Scardovia inopinata F0304]
Length = 259
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 103/212 (48%), Gaps = 15/212 (7%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF-- 78
+RP D V L+A +K D +I A++ G + EN+ QE K +R E L F
Sbjct: 46 GRRPSD-VQLLAATKTRDVGEIMAAVTAGITLIGENRPQEVVLKGGAIRAESTSPLGFHL 104
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQSNK+++I+ D IE+V A +S + + ++++VN E KSG
Sbjct: 105 IGQLQSNKINKILPYVDTIESVDSASLARKISDRALAAGKTARIFLEVNVSGEESKSGCQ 164
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--HFYLLSEIARECKL---------- 186
P Q L + GLM + P + + H Y R+ L
Sbjct: 165 PQQVGQLADQIASLPALTLAGLMTVGPHVTDESAIRHAYSDLRQLRDGLLEQNDPAWASC 224
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
T LSMGM++D+ LA+A GAT VR+G+ IFG R
Sbjct: 225 TDLSMGMSQDYPLAVAEGATIVRLGTAIFGPR 256
>gi|189500708|ref|YP_001960178.1| alanine racemase domain-containing protein [Chlorobium
phaeobacteroides BS1]
gi|189496149|gb|ACE04697.1| alanine racemase domain protein [Chlorobium phaeobacteroides BS1]
Length = 229
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 113/219 (51%), Gaps = 31/219 (14%)
Query: 20 LAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW-------IPLRKEW 72
+ + P D ++L+AVSK S +R A GQ E+ +QE +K+ +P+R W
Sbjct: 22 IGRDPGD-ITLIAVSKTKSSALVREAFDAGQRDLGESYVQEFLEKYSSDHLSGLPIR--W 78
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
FIG LQSNKV +IV +I ++ + KTA LS +++ I+VNT E
Sbjct: 79 ----HFIGHLQSNKVKDIVDKTYLIHSIDKLKTAEELSKLASRKNLTADYLIEVNTSGEA 134
Query: 133 QKSGIMPN----QTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSEIARECK-- 185
K G+ P +T L + ++GLM I P + F LL E+ + +
Sbjct: 135 TKFGLSPETLLLETSRLFTLP----NIRLKGLMTIASPDRNKARKEFRLLGELLEKLRET 190
Query: 186 ------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LT+LSMGM++DF++AI GAT +RIG+ IFG R
Sbjct: 191 SPDPSSLTELSMGMSQDFDIAIEEGATIIRIGTAIFGSR 229
>gi|188585941|ref|YP_001917486.1| alanine racemase domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350628|gb|ACB84898.1| alanine racemase domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 233
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 12/223 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ K+K+ SA L + D ++L+ ++K +++I G ENK+Q+A K I
Sbjct: 9 LQEIKEKMSKSAELVGKSLDDLTLIGITKYATTEQIAELYRLGVTNIGENKVQDALPK-I 67
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
++ ++ F+G LQSNKV +++ + + + R A L K + + +Q+
Sbjct: 68 EELEDLEINWHFVGHLQSNKVKYLINHISLYQALDRTSLAKELHKRADKNNVNVNALVQI 127
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
N + K G+ +T+ F+ Y ++N++GLM +PP P +P++ + E+
Sbjct: 128 NIAGDENKFGLSQEETEHFIEKVLNNYPRINIKGLMTMPPYFSEPEQVRPYYSRMRELFE 187
Query: 183 -------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E LSMGM+ D+ +AI GA VR+G +F +R
Sbjct: 188 LFKTKFGEQHFQYLSMGMSHDYHIAIEEGANMVRVGRSLFTQR 230
>gi|307132430|ref|YP_003884446.1| putative enzyme [Dickeya dadantii 3937]
gi|306529959|gb|ADM99889.1| predicted enzyme [Dickeya dadantii 3937]
Length = 244
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 107/224 (47%), Gaps = 11/224 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
LQ +Q+I +A R + ++L+AVSK I A++ GQ F EN +QE K
Sbjct: 14 NLQDVRQRISAAAERCGRAPEEITLLAVSKTKPVSAIEEAIAAGQRAFGENYVQEGVDKV 73
Query: 66 IPLRK-EWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ + D QL FIG LQSNK + FD T+ R + A LS + L V
Sbjct: 74 RHFQAAQPDTQLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIAQRLSEQRPAHLPPLNV 133
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPK--PHFYLLSE 179
+QVN E KSGI+ L + GLM IP P + + F ++E
Sbjct: 134 LLQVNISQEQSKSGILARDLSGLAASVAHLPNLRLRGLMAIPAPETDHARQLAVFRQMTE 193
Query: 180 IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K L LSMGMT D AI +G+T VRIG+ IFG R
Sbjct: 194 LFLQLKADYGTLDTLSMGMTDDMAAAIEAGSTLVRIGTAIFGAR 237
>gi|290961160|ref|YP_003492342.1| hypothetical protein SCAB_68051 [Streptomyces scabiei 87.22]
gi|260650686|emb|CBG73802.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 239
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 113/233 (48%), Gaps = 20/233 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I + A R +D V+LV V+K + +R+ G AENK Q+A
Sbjct: 8 LAANLAKVESRIAAACAAAGRGRDEVTLVVVTKTYPADDVRILSELGVRHVAENKDQDAA 67
Query: 63 KKWI---PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K L W F+G LQ+NKV +V D++++V R + + LS E ++ R
Sbjct: 68 PKAAECSDLHLVW----HFVGQLQTNKVRSVVRYADLVQSVDRSRLVTALSKEAVRAGRE 123
Query: 120 LPVYIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PK 171
+ +QV + ++ G+ P+ + L + L V+GLM + P G +
Sbjct: 124 VGCLVQVALDADASGRGERGGVGPDGIGELADLLAEAPGLRVDGLMTVAPLTGEYAGRQR 183
Query: 172 PHFYLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L +++ + + T +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 184 AAFERLMDLSTDLRRTHPAATMVSAGMSADLEEAVAAGATHVRVGTAVLGVRP 236
>gi|325474954|gb|EGC78140.1| hypothetical protein HMPREF9353_00987 [Treponema denticola F0402]
Length = 246
Score = 102 bits (254), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 12/223 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ +++E + R V L+ +K V ++I A G+++ ENK+QE +K+
Sbjct: 9 LEEVHRRMEKACKTCGRDLKEVRLLMATKTVTPERILKAFEYGELLIGENKVQELCEKYE 68
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
PL + FIG LQ+NK+ +++ D IE+V R A LS + + + + + IQV
Sbjct: 69 PLSS-VKHETHFIGHLQTNKIKDVIKYADCIESVDRLDLAEKLSKRLESEGKTMDILIQV 127
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAMGNPKPHFYLLSEIARE 183
NT E K G P + + L ++GLM I M + F LL +I +E
Sbjct: 128 NTSQEESKFGCKPEEALSLTEKIAKLPCLKIKGLMTIGLFSDNMDKVRLCFKLLQKIRKE 187
Query: 184 --------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +SMGMT D E+AI G+T +R+G+ IFG+R
Sbjct: 188 ITEKNIPNVSMEVVSMGMTGDLEVAIEEGSTLIRVGTAIFGKR 230
>gi|257455743|ref|ZP_05620971.1| pyridoxal phosphate enzyme, YggS family [Enhydrobacter aerosaccus
SK60]
gi|257446871|gb|EEV21886.1| pyridoxal phosphate enzyme, YggS family [Enhydrobacter aerosaccus
SK60]
Length = 241
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 106/225 (47%), Gaps = 23/225 (10%)
Query: 15 ENSAILAK---------RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
EN A++A+ R +V L+AVSK + IR GQ F EN +QEA K
Sbjct: 18 ENQALIARWQQVKTDVARLNPTVKLLAVSKTKPNWMIRTLAQQGQQDFGENYVQEAVAKI 77
Query: 66 IPLR----KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
L+ E + +IG +Q NK E+ + FD + V R A L+ + + L
Sbjct: 78 AALKDVTANEQPLVWHYIGHIQRNKTKELAAHFDWVHGVDRLIIAQRLNEQRAEHLAPLN 137
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
+ I+VN E KSG PNQ + V Q L + GLM IP N F ++
Sbjct: 138 ICIEVNIDDEASKSGCQPNQLPELVTEISQLPNLQLRGLMIIP--AKNSSSAFVKTQQLF 195
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A + LSMGM+ D E AIA+GAT VRIG+ IFG R
Sbjct: 196 EQNKRYHAHPEQWDTLSMGMSGDIEQAIAAGATIVRIGTAIFGAR 240
>gi|326203530|ref|ZP_08193394.1| alanine racemase domain protein [Clostridium papyrosolvens DSM
2782]
gi|325986350|gb|EGD47182.1| alanine racemase domain protein [Clostridium papyrosolvens DSM
2782]
Length = 235
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 111/219 (50%), Gaps = 17/219 (7%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-- 70
+I+ +A + R + + L+AV+K V+ +IR G F EN++QE +K+ +
Sbjct: 16 RIKAAAEKSGRKAEDIKLIAVTKTVEVDRIRNVSEYGVPDFGENRVQELLEKYDKFDEAT 75
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
+W IG LQ+NKV I+ +I +V + A + K + + + +QVN
Sbjct: 76 KW----HLIGHLQTNKVKYIIDKVHMIHSVDSFELAKEIDNRAGKTGKKMNILLQVNVSG 131
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-- 185
E K GI P + ++V + L + G+M I P N +P F L +I + K
Sbjct: 132 EETKFGIRPEEVNEYVEYISRLKNLLLRGMMTIAPFADNTQEIRPIFKNLYDIFIDIKNK 191
Query: 186 ------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ DFE+AI GA VRIG+GIFG+R
Sbjct: 192 RIDNVSMDYLSMGMSNDFEVAIEEGANIVRIGTGIFGKR 230
>gi|254167228|ref|ZP_04874081.1| conserved hypothetical protein TIGR00044 [Aciduliprofundum boonei
T469]
gi|197624084|gb|EDY36646.1| conserved hypothetical protein TIGR00044 [Aciduliprofundum boonei
T469]
Length = 218
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 103/204 (50%), Gaps = 16/204 (7%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW--IPLRKEWDVQLRFIGSLQS 84
V L+A +K ++I A++ G + EN +QEA +K+ I + EW FIG LQ
Sbjct: 17 GVRLLAATKSRTVEEILEAINAGVDLIGENYVQEALQKYEKIGNKVEW----HFIGHLQK 72
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV + + +FDVIETV + A + + V I++N+ E QK+G+MP D
Sbjct: 73 NKVKKALQIFDVIETVDNVELAKEIDKRAKNMEKIAFVMIEINSAREPQKAGVMPEYALD 132
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-------LTKLSMGMT 194
L + G+M + P + P + +F EI E + + LSMGMT
Sbjct: 133 LADEIYSLEHLQLIGVMTMGPVVDEPEEIRSYFRKTKEIFDELRYIYGDKQIKYLSMGMT 192
Query: 195 RDFELAIASGATSVRIGSGIFGER 218
+ +AI GA VRIG+GIFG R
Sbjct: 193 NTWRVAIEEGANIVRIGTGIFGPR 216
>gi|194466523|ref|ZP_03072510.1| alanine racemase domain protein [Lactobacillus reuteri 100-23]
gi|194453559|gb|EDX42456.1| alanine racemase domain protein [Lactobacillus reuteri 100-23]
Length = 235
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 111/231 (48%), Gaps = 16/231 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ +K + ++KI + + R V L+ VSK + I G F EN +QE
Sbjct: 1 MTIVDKAKEVQEKIIAACKRSGRDPQDVQLLPVSKNHPAAGIAELYKAGWNNFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK L D+ IG LQ NKV I +I++V K + + E K R +
Sbjct: 61 LAKKHDELPA--DINWYMIGHLQRNKVKYIADYVTMIQSVDSLKLMNTIEKEGRKHDRII 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL---NVEGLMCIPPAMGNP---KPHF 174
P+ I+VN G E K G+ P +D + L QL + GLM P +P +P F
Sbjct: 119 PILIEVNVGEEESKFGVKPT-LQDCMELAEASLQLPHVKLRGLMTSAPYYDDPEKTRPIF 177
Query: 175 YLLSEI-------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E+ + KL LSMGMT D+E+A+ G+T VR+G+ IFG R
Sbjct: 178 RRLRELRDKMNKQNDQLKLDVLSMGMTHDYEIAVEEGSTCVRVGTAIFGPR 228
>gi|71901698|ref|ZP_00683773.1| Protein of unknown function UPF0001 [Xylella fastidiosa Ann-1]
gi|71728540|gb|EAO30696.1| Protein of unknown function UPF0001 [Xylella fastidiosa Ann-1]
Length = 261
Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 102/211 (48%), Gaps = 17/211 (8%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81
R SV+L+ VSK VD IR++ G ENK Q+A KW + D+ IG
Sbjct: 43 NRDPSSVTLLPVSKTVDEVHIRLSYEAGCRKLGENKAQDAYHKWEAMSDLTDLHWSVIGH 102
Query: 82 LQSNK---VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
LQ+NK V+ S F ++++ + A +L + + R L V IQVNT E K G+
Sbjct: 103 LQTNKAKLVARFASEFQALDSL---RVAEVLERRLQIEGRSLDVLIQVNTSGETNKYGLP 159
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK------PHFYLLSEIAREC-----KLT 187
P + FV L V GLM + G+ +L + ++ +T
Sbjct: 160 PEEVVRFVQALSAYPALRVRGLMTLALLSGDTSRVRQCFTQLRILRDRIQQASPQGHHIT 219
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D E+AI GAT VR+G I+G R
Sbjct: 220 ELSMGMSGDLEIAIEEGATVVRVGQAIYGAR 250
>gi|308188044|ref|YP_003932175.1| UPF0001 protein yggS [Pantoea vagans C9-1]
gi|308058554|gb|ADO10726.1| UPF0001 protein yggS [Pantoea vagans C9-1]
Length = 235
Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 98/201 (48%), Gaps = 8/201 (3%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ ++L+AVSK + + A + GQ+ F EN +QE +K L ++ FIG LQSN
Sbjct: 27 EEITLLAVSKTKPASAVEEAFAAGQIAFGENYVQEGVEKVQALAAHPELAWHFIGPLQSN 86
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
K + F T+ R++ A L+ + L V IQVN E KSGIM
Sbjct: 87 KSRLVAKHFAWCHTIDRQRIAQRLNDQRPASLPPLNVLIQVNISDENSKSGIMLEAVSGL 146
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--------LTKLSMGMTRDF 197
QL + GLM IP A + + + ++A + LS+GM+ D
Sbjct: 147 AEQIAALPQLRLRGLMAIPAAESDYQRQLAVCQQMAEAFRQLQQHYPQADTLSLGMSDDM 206
Query: 198 ELAIASGATSVRIGSGIFGER 218
E AIA+G+T VRIG+ IFG R
Sbjct: 207 EAAIAAGSTMVRIGTAIFGAR 227
>gi|282897740|ref|ZP_06305739.1| Protein of unknown function UPF0001 [Raphidiopsis brookii D9]
gi|281197419|gb|EFA72316.1| Protein of unknown function UPF0001 [Raphidiopsis brookii D9]
Length = 224
Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 108/217 (49%), Gaps = 13/217 (5%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
E I+ + SV L+AVSK V ++ +R A G F E+++QEA K I L+ D+
Sbjct: 7 ERVTIIRAQLPPSVRLIAVSKQVSTQLMREAYRAGIRDFGESRIQEAASKQIELQDLPDI 66
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
FIG LQSNK + V LF I +V A L L +QV + QK
Sbjct: 67 TWHFIGHLQSNKAKKAVELFSWIHSVDNLHIAERLHTIAQTTGASLCSCLQVKILPDPQK 126
Query: 135 SG-IMPNQTKDFVILCRQKYQLNVEGLMCIPP-AMGNPK-----PHFY-LLSEIA----R 182
SG +P D L Q L ++GLM IPP + K H Y L EIA
Sbjct: 127 SGWTVPQLLTDLPFLS-QYQNLQIQGLMTIPPWGLKEEKILHVFNHTYNLAQEIACQKWA 185
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ +LSMGM+ D+ LA+ +GAT VR+G+ +FG RP
Sbjct: 186 NIGMRELSMGMSGDYNLAVKAGATMVRLGTILFGNRP 222
>gi|325133219|gb|EGC55889.1| hypothetical protein TIGR00044 [Neisseria meningitidis M6190]
Length = 228
Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 98/206 (47%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AV K S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPPLQVCIEVNIAGEAAKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY----LLSEI-ARECKLTKLSMG 192
+ + + L V GLMC+ A + K F LL+++ A K LSMG
Sbjct: 142 EAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQTMQKLLADLNAAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|293449281|ref|ZP_06663702.1| YggS family pyridoxal phosphate enzyme [Escherichia coli B088]
gi|291322371|gb|EFE61800.1| YggS family pyridoxal phosphate enzyme [Escherichia coli B088]
Length = 234
Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 109/231 (47%), Gaps = 26/231 (11%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE K
Sbjct: 7 NLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEGVDKI 66
Query: 66 IPLRK------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ EW FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 67 RHFQELGVTGLEW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP P+ + E
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPA----PESEYVRQFE 178
Query: 180 IAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 179 VARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|298346049|ref|YP_003718736.1| alanine racemase domain-containing protein [Mobiluncus curtisii
ATCC 43063]
gi|304390192|ref|ZP_07372146.1| YggS family pyridoxal phosphate enzyme [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|298236110|gb|ADI67242.1| alanine racemase domain protein [Mobiluncus curtisii ATCC 43063]
gi|304326674|gb|EFL93918.1| YggS family pyridoxal phosphate enzyme [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 248
Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 119/234 (50%), Gaps = 21/234 (8%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L Q++ +A A R +S+ ++ VSK +R AL+ G F ENK QE K
Sbjct: 7 RLHDLSQRVAAAAATAGRDSESIRILPVSKTHPVADLREALAAGVSEFGENKPQELATKA 66
Query: 66 IPLRKEWD-------VQLRF--IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
L D V R+ IG+LQ NK IV+ ++++ K A L+ + +
Sbjct: 67 AELGANLDLCADRNEVSPRWVQIGNLQRNKAKLIVAYGAELQSLDSAKLAQTLNRLLDQA 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG--NPKPHF 174
R L V I+VNT E K G+ P +T + L + +L++ GLM + + + F
Sbjct: 127 GRTLEVMIEVNTSGEDAKHGVAPEETLELARLVIDQPRLHLIGLMTVAAHIDRVGERGVF 186
Query: 175 YLLSEIA--RECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ S++A RE L +LSMGM+ DFELAIA+G+T VR+GS +FG R
Sbjct: 187 EMFSQLAGLREAVLGLPGGADCRELSMGMSGDFELAIAAGSTCVRVGSALFGPR 240
>gi|254673073|emb|CBA07735.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
Length = 228
Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 97/206 (47%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AV K S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGRDPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + T+ R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTICRLKTAVRLSGQRPSSMPPLQVCIEVNIAGEAAKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE-----CKLTKLSMG 192
+ + + + V GLMC+ A G+ K F + ++ + K LSMG
Sbjct: 142 EAVVLAVEVAKLPNIVVRGLMCVAKAGGSEAELKTQFQTMQKLLADLNTAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|94499757|ref|ZP_01306293.1| Predicted enzyme with a TIM-barrel fold protein [Oceanobacter sp.
RED65]
gi|94427958|gb|EAT12932.1| Predicted enzyme with a TIM-barrel fold protein [Oceanobacter sp.
RED65]
Length = 238
Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 103/212 (48%), Gaps = 22/212 (10%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A+ +++V L+AVSK + IR + GQ F EN +QE K I + ++ FIG
Sbjct: 25 AQYKQNTVQLLAVSKRHSIEAIRAIHALGQQSFGENYVQEGVDK-INALSDLAIEWHFIG 83
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI--- 137
LQSNK ++ F + T+ R+K A LS + L V IQ+N + KSGI
Sbjct: 84 PLQSNKTKDVAEHFAWMHTLERDKIAKRLSQQRPSHLPPLNVLIQINISQQESKSGISLQ 143
Query: 138 ----MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK------PHFYLLSEIARE-CKL 186
+ Q D+ LC + GLMCIP F ++ ++ +
Sbjct: 144 DLPALAQQVNDYDNLC-------LRGLMCIPAPQDEASLTQDFCSMFQAFEKLKQQYSTV 196
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D ELAI G+T VR+GS IFG R
Sbjct: 197 DTLSMGMSGDLELAIEQGSTMVRVGSAIFGPR 228
>gi|330446899|ref|ZP_08310550.1| alanine racemase, N-terminal domain protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328491090|dbj|GAA05047.1| alanine racemase, N-terminal domain protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 236
Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 100/207 (48%), Gaps = 11/207 (5%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL---RFI 79
R DSV L+AVSK + I A++ GQ F EN +QE K L FI
Sbjct: 24 RAADSVQLLAVSKTKPVEAIEEAIAAGQYAFGENYVQEGVDKVNHFSTHSAKNLLVWHFI 83
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G +QSNK + FD + ++ R KTA LS + L V +QVN+ E KSG+
Sbjct: 84 GPIQSNKTRLVAEHFDWVHSIDRVKTAKRLSDQRPANMAPLQVLLQVNSNDEETKSGVSL 143
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIP-PA--MGNPKPHFYLLSEIARECKLT-----KLSM 191
+ + + GLM IP PA + F LS+ + K T LSM
Sbjct: 144 AELPALAAEIAAMPNIELRGLMSIPQPATDFDSQFATFKTLSDALEQLKTTYPQVDTLSM 203
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 204 GMSDDMEAAIAAGSTIVRIGTAIFGAR 230
>gi|282854076|ref|ZP_06263413.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
J139]
gi|282583529|gb|EFB88909.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
J139]
Length = 238
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 110/239 (46%), Gaps = 21/239 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L + +I+++ R VSL+ VSK + A G +F ENK+Q+
Sbjct: 1 MSVADNLAAVRTRIDDACRACDRNPGEVSLLPVSKTKPPSMVDEAYRAGYRLFGENKVQD 60
Query: 61 AKKKWIPLRK-----EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
A K + EW + IG LQ+NK + + + K A L + K
Sbjct: 61 ALAKSELMDDDHPGLEWSI----IGGLQTNKAKYVARFATEFQALDSLKIAHELDKRLQK 116
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--- 172
+ R L V +Q+N+ E QKSGI P + DF L+V GLM + + +
Sbjct: 117 EGRQLRVLVQMNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRGLMTVALNSSDQRAVAD 176
Query: 173 --------HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER-PCQT 222
L E ++LSMGM+ D E+AIA G+T VRIG+ IFG R P +T
Sbjct: 177 CFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQVRIGTDIFGTRDPVRT 235
>gi|117928222|ref|YP_872773.1| hypothetical protein Acel_1014 [Acidothermus cellulolyticus 11B]
gi|117648685|gb|ABK52787.1| Protein of unknown function UPF0001 [Acidothermus cellulolyticus
11B]
Length = 244
Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 109/227 (48%), Gaps = 11/227 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L ++++ + A R + ++++AV+K + IR+ G EN+ QEA+
Sbjct: 14 LAANLAALRRRVIAACRNAGRDPEEITVIAVTKTFPAADIRLLHELGVHDVGENRDQEAR 73
Query: 63 KKWIPLRKE-WDVQL---RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K L +D L FIG+LQ NK + ++ +V R + L+ ++ R
Sbjct: 74 AKRAELAAGGFDPDLLRWHFIGALQVNKCRSVARYAAMVHSVDRAEQLPRLAAGARERGR 133
Query: 119 FLPVYIQVNTGYEIQ--KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
LP +QVN E+ + G+ P L L + G+M I P G P F
Sbjct: 134 VLPCLVQVNLDPEVSPGRRGVPPADALTLADLLADTPGLELRGVMGIAPLDGEPAAAFAT 193
Query: 177 LSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+++AR+ + T LS GM+ D E AIA+GAT VRIG+ + G R
Sbjct: 194 LAQVARKLQARYPAATVLSAGMSGDLEAAIAAGATHVRIGAALLGTR 240
>gi|150390564|ref|YP_001320613.1| alanine racemase domain-containing protein [Alkaliphilus
metalliredigens QYMF]
gi|149950426|gb|ABR48954.1| alanine racemase domain protein [Alkaliphilus metalliredigens QYMF]
Length = 231
Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 116/233 (49%), Gaps = 21/233 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +L +I+ +A+ ++ + V L+AV+K VD ++ + G ENK+QE
Sbjct: 1 MSIEARLNTTLDRIKEAAVRGEQKHEEVRLIAVTKTVDIDVMQQLIDLGVRDMGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS--- 117
+K+ L + V+ IG LQ NKV I+ D I ++ + L+LE+ KQ+
Sbjct: 61 LTRKYEALGNK--VKWHMIGHLQRNKVKYIIDKVDFIHSLD----SYALALEIEKQAGKI 114
Query: 118 -RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
R + IQVN E K G+ P T+ + + + + GLM + P + NP+
Sbjct: 115 NRVIECLIQVNISGEESKYGLTPKATEGLLEKIKDLSHVQIVGLMTMAPYVDNPEETRMY 174
Query: 173 --HFYLLSEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LS + + LSMGMT DF++AI G+ VR+G+ I GER
Sbjct: 175 FRDLKILSSTLEKKYGPTATMKYLSMGMTNDFQIAIEEGSNLVRVGTAILGER 227
>gi|28899390|ref|NP_798995.1| FkuA protein [Vibrio parahaemolyticus RIMD 2210633]
gi|153839183|ref|ZP_01991850.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
gi|260366261|ref|ZP_05778720.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
K5030]
gi|260878922|ref|ZP_05891277.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
AN-5034]
gi|260898277|ref|ZP_05906773.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
Peru-466]
gi|260903381|ref|ZP_05911776.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
AQ4037]
gi|28807626|dbj|BAC60879.1| FkuA [Vibrio parahaemolyticus RIMD 2210633]
gi|149747285|gb|EDM58269.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
gi|308085861|gb|EFO35556.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
Peru-466]
gi|308090493|gb|EFO40188.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
AN-5034]
gi|308107474|gb|EFO45014.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
AQ4037]
gi|308113535|gb|EFO51075.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
K5030]
gi|328474080|gb|EGF44885.1| FkuA protein [Vibrio parahaemolyticus 10329]
Length = 237
Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 103/215 (47%), Gaps = 19/215 (8%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK-------WIPLRKEWDVQ 75
R +SV L+AVSK + I A GQ F EN +QE K + R EW
Sbjct: 24 RSPESVQLLAVSKTKPVEAILEAYQAGQTAFGENYVQEGVSKVQHFAEHYPDNRIEW--- 80
Query: 76 LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKS 135
FIG +QSNK + FD + T+ R K A L+ + ++ + L V IQVNT E KS
Sbjct: 81 -HFIGPIQSNKSRLVAEHFDWVHTIDRAKIAQRLNEQRPQELKPLQVLIQVNTSGEDSKS 139
Query: 136 GIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA--------RECKLT 187
G+ + + L + L + GLM IP + + ++A + ++
Sbjct: 140 GVSDAEIFELAELISRLPNLTLRGLMSIPANVSDYDAQLREFEKLATLKQTLEQQYPEID 199
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
LSMGM+ D AI +G+T VRIG+ IFG R T
Sbjct: 200 TLSMGMSGDMTAAIEAGSTMVRIGTAIFGARDYST 234
>gi|153835263|ref|ZP_01987930.1| conserved hypothetical protein [Vibrio harveyi HY01]
gi|148868238|gb|EDL67378.1| conserved hypothetical protein [Vibrio harveyi HY01]
Length = 236
Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 103/211 (48%), Gaps = 19/211 (9%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK-------WIPLRKEWDVQ 75
R +SV L+AVSK + I A GQ F EN +QE K + R EW
Sbjct: 24 RSPESVQLLAVSKTKPVEAILEAYQAGQEAFGENYVQEGVSKVQHFAEHYPDNRIEW--- 80
Query: 76 LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKS 135
FIG +QSNK + FD + T+ R K A L+ + + + L V IQVNT E KS
Sbjct: 81 -HFIGPIQSNKSRPVAEHFDWVHTIDRAKIAQRLNDQRPSELKPLQVLIQVNTSGEESKS 139
Query: 136 GIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIAREC-----KLT 187
G+ + + L + L + GLM IP P + F L E+ ++ +
Sbjct: 140 GVADAEIFELAELISRLPNLTLRGLMSIPANVPDYESQLRAFKQLEELKQKLAQQYPDVD 199
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D + AI +G+T VRIG+ IFG R
Sbjct: 200 TLSMGMSGDMDAAIEAGSTMVRIGTAIFGAR 230
>gi|90412040|ref|ZP_01220047.1| Predicted enzyme with a TIM-barrel fold [Photobacterium profundum
3TCK]
gi|90327018|gb|EAS43397.1| Predicted enzyme with a TIM-barrel fold [Photobacterium profundum
3TCK]
Length = 233
Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 105/207 (50%), Gaps = 11/207 (5%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK---WIPLRKEWDVQLRFI 79
R DSV L+AVSK +I A++ GQ F EN +QE +K + + ++ FI
Sbjct: 24 RTTDSVQLLAVSKTKPIAEIDDAIAAGQRAFGENYVQEGVEKVQHFANHAQTEEIFWHFI 83
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G +QSNK I FD + +V R KTA L+ + L + +QVNT E KSG+
Sbjct: 84 GPIQSNKTRPIAEHFDWVHSVDRIKTARRLNEQRPSSMAPLNILLQVNTSGEESKSGVNI 143
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIAREC-----KLTKLSM 191
N L + GLM IP + + F LL++ ++ ++ LSM
Sbjct: 144 NDLAALADEIATMPNLVLRGLMSIPQKADSYDSQYAAFKLLADAQQQLHIKYPQIDTLSM 203
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 204 GMSGDMDAAIAAGSTIVRIGTAIFGAR 230
>gi|253572881|ref|ZP_04850279.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|298386606|ref|ZP_06996162.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 1_1_14]
gi|251837513|gb|EES65606.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|298260983|gb|EFI03851.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 1_1_14]
Length = 222
Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 111/214 (51%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+LA+ P+ V LVAVSK ++ I A GQ IF E+K+QE K+ L K D++ F
Sbjct: 10 VLAELPQ-GVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQEMTAKYETLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK+ ++ +I + K + ++ + K R + +Q++ E K G
Sbjct: 67 IGHLQTNKIKYMIPYVAMIHGIDTYKLLTEVNKQAAKAGRIVNCLLQIHVAQEETKFGFS 126
Query: 139 PNQTKDFVILCRQK--YQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECK-------- 185
P + KD + K + + GLM + + + F LL+ + +E K
Sbjct: 127 PEECKDMLHAGEWKELSHVRICGLMGMASNTDDVEQINREFCLLNRLFQEIKANWFADSD 186
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 187 TFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGER 220
>gi|290969126|ref|ZP_06560654.1| pyridoxal phosphate enzyme, YggS family [Megasphaera genomosp.
type_1 str. 28L]
gi|290780846|gb|EFD93446.1| pyridoxal phosphate enzyme, YggS family [Megasphaera genomosp.
type_1 str. 28L]
Length = 227
Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 103/209 (49%), Gaps = 23/209 (11%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA--KKKWIPLRK-EWDVQLRFIGSL 82
D ++LVAV+K +R A S G EN++QEA K+K P W IG L
Sbjct: 24 DKITLVAVTKNHPVSCMREAASAGITQVGENRVQEALQKQKDFPNNTLTW----HLIGHL 79
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q+NK V+ FD+I +V E + + + PV +QVN E K G+
Sbjct: 80 QTNKAKAAVAHFDLIHSVDSEHLLLAVQKAAAQIGKIQPVLLQVNVAREESKYGMA---V 136
Query: 143 KDFVILCRQKYQLN---VEGLMCIPPAMGNP---KPHFYLLSEIARECK-------LTKL 189
++F +CR L+ V+G MCI P + +P F + + + K + L
Sbjct: 137 EEFPHICRLASSLSHVCVQGFMCIAPNVAQVEEVRPVFRIAHALYEDMKQKFPTGQIRYL 196
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMGMT DFE+AI GA VR+G+ IFGER
Sbjct: 197 SMGMTHDFEIAIEEGANIVRVGTAIFGER 225
>gi|257465703|ref|ZP_05630074.1| hypothetical protein AM202_04262 [Actinobacillus minor 202]
gi|257451363|gb|EEV25406.1| hypothetical protein AM202_04262 [Actinobacillus minor 202]
Length = 228
Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 99/202 (49%), Gaps = 8/202 (3%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ + L+AVSK + I A+ GQ F EN +QE +K ++ +++ FIG LQS
Sbjct: 23 RSDIRLLAVSKTKPVQAIEEAIQAGQKAFGENYVQEGVEKINYFKENEEIEWHFIGPLQS 82
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK + FD I+TV R K A L+ + L V IQ+N E KSGI P + +
Sbjct: 83 NKSRLVAEHFDWIQTVDRLKIAERLNEQRPVGKAPLNVLIQINISDESSKSGIAPEEMLE 142
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE--------CKLTKLSMGMTRD 196
L + GLM IP +P+ L ++ + + LSMGM+ D
Sbjct: 143 LAHKIASLPNLRLRGLMAIPKPESDPEQQKVALRKMEQLFHRLQQDFSGIDTLSMGMSDD 202
Query: 197 FELAIASGATSVRIGSGIFGER 218
+ AI G+T VRIG+ IFG R
Sbjct: 203 MQSAIECGSTMVRIGTAIFGAR 224
>gi|24114206|ref|NP_708716.1| hypothetical protein SF2941 [Shigella flexneri 2a str. 301]
gi|30064267|ref|NP_838438.1| hypothetical protein S3145 [Shigella flexneri 2a str. 2457T]
gi|24053353|gb|AAN44423.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30042524|gb|AAP18248.1| hypothetical protein S3145 [Shigella flexneri 2a str. 2457T]
gi|281602287|gb|ADA75271.1| putative enzyme with a TIM-barrel fold [Shigella flexneri 2002017]
gi|313648001|gb|EFS12447.1| pyridoxal phosphate enzyme, YggS family [Shigella flexneri 2a str.
2457T]
gi|332753795|gb|EGJ84174.1| hypothetical protein SFK671_3525 [Shigella flexneri K-671]
gi|332754247|gb|EGJ84613.1| hypothetical protein SF274771_3537 [Shigella flexneri 2747-71]
gi|332765368|gb|EGJ95586.1| alanine racemase, N-terminal domain protein [Shigella flexneri
2930-71]
gi|333015075|gb|EGK34418.1| hypothetical protein SFK304_3756 [Shigella flexneri K-304]
Length = 234
Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 109/231 (47%), Gaps = 18/231 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRK------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K ++ EW FIG LQSNK + FD T+ R + A+ L+ +
Sbjct: 63 VDKIRHFQELGVTGLEW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNEQRPA 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V IQ+N E KSGI + + + +L + GLM IP F
Sbjct: 119 ELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPALESEYVRQFE 178
Query: 176 LLSEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 179 VARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|323452956|gb|EGB08829.1| hypothetical protein AURANDRAFT_14200 [Aureococcus anophagefferens]
Length = 213
Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 103/210 (49%), Gaps = 17/210 (8%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIGSLQSNKV 87
+L+AVSK+ I A + G V F EN +QE +K + + ++ FIG LQSNKV
Sbjct: 4 TLLAVSKLKPLSLIAAAHAAGHVDFGENYVQELVEKAAAVEDGVEHLKWHFIGRLQSNKV 63
Query: 88 SEI--VSLFDVIETVSREKTASLLS---LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
++ V + + TVS EK + L E+ + L V++QVNT E K G P
Sbjct: 64 RQLCGVKRLEAVHTVSSEKLVAKLDGAWPELQPGAGPLKVFVQVNTSGEEAKGGCEPADA 123
Query: 143 KDFVILCRQKYQLNVEGLMCI---PPAMGNPKPHFYLLSE--------IARECKLTKLSM 191
L L +EGLMCI A G+ P F L + + E LSM
Sbjct: 124 PALAKLAAAAPNLQLEGLMCIGKYSGAEGDASPDFVCLRDCRDAAAAALGVEPASLGLSM 183
Query: 192 GMTRDFELAIASGATSVRIGSGIFGERPCQ 221
GM+ DFE AI AT VR+GS IFG RP +
Sbjct: 184 GMSHDFETAIEHDATHVRVGSTIFGARPAK 213
>gi|196015285|ref|XP_002117500.1| hypothetical protein TRIADDRAFT_61518 [Trichoplax adhaerens]
gi|190580029|gb|EDV20116.1| hypothetical protein TRIADDRAFT_61518 [Trichoplax adhaerens]
Length = 254
Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 118/235 (50%), Gaps = 32/235 (13%)
Query: 12 QKIENSAIL--AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW---- 65
Q+IE + + A+ P LVAVSK I A GQ F EN +QE ++K
Sbjct: 25 QRIEAAKLRRSAELPNIEPRLVAVSKTKPVNLIIDAFESGQTHFGENYVQELERKANDEE 84
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLL--SLEMIKQSRFLP 121
+ + ++ FIG LQSNK ++ ++ D +ETV +K A L + E + L
Sbjct: 85 LLKATKGQIKWHFIGHLQSNKCKKLAAIPNLDTVETVDSKKLADCLNKAWESAGKLEQLN 144
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPP---AMGNPKPHFYL 176
+ +QVNT E KSG P+ V +L R K +LN GLM I + P F L
Sbjct: 145 IMVQVNTSQEENKSGCPPDDCVTIVDHVLKRCK-KLNFVGLMTIGQLGRHDADSNPDFRL 203
Query: 177 LSEIARECKLT------------KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
LSE C+ T +LSMGM++DFE AI G+TSVR+GS IFG RP
Sbjct: 204 LSE----CRKTVSDKMGIPIDALELSMGMSQDFEHAIEMGSTSVRVGSAIFGSRP 254
>gi|325298083|ref|YP_004258000.1| hypothetical protein Bacsa_0936 [Bacteroides salanitronis DSM
18170]
gi|324317636|gb|ADY35527.1| protein of unknown function UPF0001 [Bacteroides salanitronis DSM
18170]
Length = 224
Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 111/214 (51%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+LA+ P + V LVAVSK ++ I A GQ IF E+K QE +K+ L K D++ F
Sbjct: 10 VLAELP-EGVRLVAVSKFHPAEAIEEAYRAGQRIFGESKEQELSEKYNVLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NKV I +IE V K + ++ + K +R +P ++++ E K G
Sbjct: 67 IGHLQTNKVKYIAPYITLIEAVDSYKLLTEINKQAGKHNRTIPCLLEIHVAQEESKYGFT 126
Query: 139 PNQTKDFVILCRQK--YQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-------- 185
P+ ++ + K + + + G+M + + + F L + E K
Sbjct: 127 PDDCREMLEAGEWKELHNIRIAGVMGMATNTDDEAQIEREFRTLKALFDEWKQAFFADEP 186
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++SMGM+ D+ +AI +G+T VR+GS IFGER
Sbjct: 187 AFKEISMGMSHDYRIAIRAGSTLVRVGSKIFGER 220
>gi|253996004|ref|YP_003048068.1| alanine racemase domain-containing protein [Methylotenera mobilis
JLW8]
gi|253982683|gb|ACT47541.1| alanine racemase domain protein [Methylotenera mobilis JLW8]
Length = 232
Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 108/230 (46%), Gaps = 20/230 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRP-KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
++ N+LQ I+++A A P + V L+AVSK + IR A + GQ F EN QE
Sbjct: 3 TISNRLQDILATIQSAA--ATSPSQQQVQLLAVSKAQPAAAIREAYAAGQTAFGENYSQE 60
Query: 61 A---KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
A +K+ L EW FIG +QSNK I F + +V R K A L+
Sbjct: 61 AVEKQKQLTDLAIEW----HFIGPIQSNKTQLIAQHFSWVHSVDRLKIAQRLNEARSSMP 116
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQVN E KSG+ P Q + L + GLM IP
Sbjct: 117 LPLQVCIQVNVSNEDTKSGVPPEQLEALASAISALPHLKLRGLMAIPAPTTETAKQIAQF 176
Query: 178 SEIAREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ REC L LS+GM+ D+ AIA GAT VRIGS +FG R
Sbjct: 177 KQV-RECYDALIRKGFALNTLSIGMSSDYPAAIAQGATIVRIGSALFGAR 225
>gi|221064850|ref|ZP_03540955.1| alanine racemase domain protein [Comamonas testosteroni KF-1]
gi|220709873|gb|EED65241.1| alanine racemase domain protein [Comamonas testosteroni KF-1]
Length = 243
Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 101/220 (45%), Gaps = 25/220 (11%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRF 78
P SV L+AVSK + +R A+ GQ F EN +QEA +K +R +Q
Sbjct: 25 PVTSVQLLAVSKTFGADAVREAMLAGQRSFGENYIQEAVEKIAAVRAMQLAGAEALQWHC 84
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG +QSNK + FD +TV R K A LS + + L V IQVN KSG++
Sbjct: 85 IGPIQSNKTRLVAENFDWAQTVDRLKIAERLSAQRPQGMVRLNVCIQVNVDGGATKSGVL 144
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC-------------- 184
Q + + L + G+M IP + P F + +
Sbjct: 145 AEQALELAEAMVKLPNLQLRGIMSIP----DDTPDFEAQCAVHKRAASIFDAIKSSGLAG 200
Query: 185 --KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
LSMGMT D E A+A+G+T VR+GSG+FG R T
Sbjct: 201 LEHFDTLSMGMTGDLEAAVAAGSTMVRVGSGVFGRRTYST 240
>gi|296314878|ref|ZP_06864819.1| pyridoxal phosphate enzyme, YggS family [Neisseria polysaccharea
ATCC 43768]
gi|296838328|gb|EFH22266.1| pyridoxal phosphate enzyme, YggS family [Neisseria polysaccharea
ATCC 43768]
Length = 228
Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 96/206 (46%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AV K S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTAVRLSRQRPSSMPPLQVCIEVNIAGEAAKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE-----CKLTKLSMG 192
+ + + L V GLMC+ A + K F + ++ + K LSMG
Sbjct: 142 EAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQTMQKLLADLNTAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|315657455|ref|ZP_07910337.1| cell division protein YlmE [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|315491927|gb|EFU81536.1| cell division protein YlmE [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 248
Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 119/234 (50%), Gaps = 21/234 (8%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+LQ Q++ +A A R +S+ ++ VSK +R AL+ G F ENK QE K
Sbjct: 7 RLQDLSQRVAAAAATAGRDSESIRILPVSKTHPVADLREALAAGVSEFGENKPQELATKA 66
Query: 66 IPLRKEWD-------VQLRF--IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
L D V R+ IG+LQ NK IV+ ++++ K A L+ + +
Sbjct: 67 AELGANLDLCADRNEVSPRWVQIGNLQRNKAKLIVAYGAELQSLDSAKLAQTLNRLLDQA 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH--F 174
R L V I+VNT E K G+ P +T + L + +L++ GLM + + F
Sbjct: 127 GRTLEVMIEVNTSGEDAKHGVAPEETLELARLVIDQPRLHLIGLMTVAAHIDRVGECGVF 186
Query: 175 YLLSEIA--RECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ S++A RE L +LSMGM+ DFELAIA+G+T VR+GS +FG R
Sbjct: 187 EMFSQLAGLREAVLGLPGGADCRELSMGMSGDFELAIAAGSTCVRVGSALFGPR 240
>gi|312171182|emb|CBX79441.1| UPF0001 protein yggS [Erwinia amylovora ATCC BAA-2158]
Length = 237
Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 111/229 (48%), Gaps = 17/229 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +Q+I +A R ++L+AVSK + + A++ GQ F EN +QE
Sbjct: 3 SIKHNLQQVRQRISTAAAKCGRDPQEITLLAVSKTKPASAVEEAVAAGQCCFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K I L + FIG LQSNK + FD TV R + AS LS + L
Sbjct: 63 VDK-IQLLANPALAWHFIGPLQSNKSRLVAENFDWCHTVDRLRIASRLSQQRPDNLAPLN 121
Query: 122 VYIQVNTGYEIQKSGIM----PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
+ IQ+N E KSGIM P + L R L + GLM IP + + +
Sbjct: 122 ILIQINISAEPSKSGIMLAELPALAQQIAALPR----LKLRGLMAIPAPQDSYESQLAVC 177
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ K + LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 178 QQMTTAFKQLQQDYPGVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGAR 226
>gi|325143359|gb|EGC65691.1| hypothetical protein TIGR00044 [Neisseria meningitidis 961-5945]
Length = 228
Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 97/206 (47%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AV K S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPPLQVCIEVNIAGEAVKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE-----CKLTKLSMG 192
+ + + + V GLMC+ A G+ K F + ++ + K LSMG
Sbjct: 142 EAVVLAVEVAKLPNIVVRGLMCVAKAGGSEAELKTQFQTMQKLLADLNTAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|304313337|ref|YP_003812935.1| hypothetical protein HDN1F_37300 [gamma proteobacterium HdN1]
gi|301799070|emb|CBL47313.1| conserved hypothetical protein [gamma proteobacterium HdN1]
Length = 238
Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 108/236 (45%), Gaps = 23/236 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
LG + +I ++A + P + L+A SK + +IR G F E+ LQEA
Sbjct: 9 LGERYSALLAQIRSAAQRYQWP--APLLLAASKTRSASEIRELFEAGCRDFGESYLQEAL 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ + FIG LQSNK I S FD + +V + A LS + L V
Sbjct: 67 PKMEAL-QDLPITWHFIGPLQSNKTRGIASHFDWVHSVDSLRLAERLSEQRPPTLAPLNV 125
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF-------- 174
+Q+N E KSG+ P L + GLMC+P P+ F
Sbjct: 126 CLQINLDNEPTKSGVAPEFAPPLANAIAALPHLRLRGLMCVP----APRELFSEQRQSAA 181
Query: 175 ---YLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
LLS I C L LS+GM+ D E AIA G+T VR+GS +FG RP +T
Sbjct: 182 ALRALLSHIQAHCPRCHPALDTLSIGMSDDLEAAIAEGSTLVRVGSALFGPRPPKT 237
>gi|319941855|ref|ZP_08016176.1| hypothetical protein HMPREF9464_01395 [Sutterella wadsworthensis
3_1_45B]
gi|319804508|gb|EFW01378.1| hypothetical protein HMPREF9464_01395 [Sutterella wadsworthensis
3_1_45B]
Length = 238
Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 106/227 (46%), Gaps = 11/227 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA- 61
L +L KQ + + A RP+ V L+AV K + + + G + F EN QE
Sbjct: 8 LEKRLAHVKQMLSEAEEKAGRPQGCVKLLAVGKTFNQEALLECARAGALAFGENYAQEGC 67
Query: 62 -KKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K W E ++ FIG LQ+NK + FD ++TV R + A LS +
Sbjct: 68 TKIDWFRTNHPELHLEWHFIGPLQANKSRMVAERFDWVQTVDRLRIAERLSAQRPDNLPP 127
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PA---MGNPKPHFY 175
L V I+VN E KSGI P + + +L + GLM IP PA G KP
Sbjct: 128 LNVLIEVNVDAEASKSGISPEELPALAAAVSELPRLRLRGLMSIPAPAETYEGKMKPLLA 187
Query: 176 LLSEI----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ S + + LSMGM+ D A+ +G+T VRIGS IFG R
Sbjct: 188 MASLFKAFQEKYPQADTLSMGMSADLTEAVEAGSTMVRIGSAIFGPR 234
>gi|269960444|ref|ZP_06174817.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834871|gb|EEZ88957.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 236
Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 105/211 (49%), Gaps = 19/211 (9%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK-------WIPLRKEWDVQ 75
R +SV L+AVSK + I A GQ+ F EN +QE K + R EW
Sbjct: 24 RSPESVQLLAVSKTKPVEAILEAYQGGQLAFGENYVQEGVSKVQHFAEHYPDNRIEW--- 80
Query: 76 LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKS 135
FIG +QSNK + FD + TV R K A L+ + + + L V IQVNT E KS
Sbjct: 81 -HFIGPIQSNKSRPVAEHFDWVHTVDRAKIAQRLNDQRPSELKPLQVLIQVNTSGEESKS 139
Query: 136 GIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-ARECKLTK------ 188
G+ + + L + L + GLM IP + + + ++ A + KL +
Sbjct: 140 GVSDAEIFELAELISRLPNLTLRGLMSIPANVPDYESQLRAFKQLEALKQKLAQQYPDVD 199
Query: 189 -LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D + AI +G+T VRIG+ IFG R
Sbjct: 200 TLSMGMSGDMDAAIEAGSTMVRIGTAIFGAR 230
>gi|257870261|ref|ZP_05649914.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|257804425|gb|EEV33247.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
Length = 224
Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 112/226 (49%), Gaps = 14/226 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q+I++S L R V LVAV+K VDS+K R + G AEN++++
Sbjct: 2 ISENLHKIQQEIQDSCALVSRKASEVRLVAVTKSVDSEKTRKIIEAGVTDCAENRVEKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L +V FIG+LQ KV I++ D + K A + + ++ +
Sbjct: 62 EKKQQLADFPEVNWHFIGNLQRRKVKSIINEVDYFHALESLKLAQEIQK---RAAKTIAC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
+++VN E K GI P+ F+ + ++NV GLM + P + +F+ L E
Sbjct: 119 FVEVNISGEASKQGIAPDDVVSFIEELQPFDKINVIGLMTMAPLASSEAEQLHYFHQLKE 178
Query: 180 IAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ T+ SMGM+ DF +AI +GAT VRIG+ +F E
Sbjct: 179 LQEKIAALHLAHAPCTETSMGMSNDFAVAIQAGATVVRIGTALFQE 224
>gi|91228687|ref|ZP_01262601.1| FkuA [Vibrio alginolyticus 12G01]
gi|91187758|gb|EAS74076.1| FkuA [Vibrio alginolyticus 12G01]
Length = 233
Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 102/207 (49%), Gaps = 11/207 (5%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD---VQLRFI 79
R +SV L+AVSK + I A GQ F EN +QE K + + ++ FI
Sbjct: 24 RTPESVQLLAVSKTKPVEAILEAYQAGQTAFGENYVQEGVSKVQHFSEHYPDNRIEWHFI 83
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G +QSNK + FD + T+ R K A L+ + + + L V IQVNT E KSG+
Sbjct: 84 GPIQSNKSRLVAEHFDWVHTIDRTKIAQRLNDQRPSELKPLQVLIQVNTSGEASKSGVTE 143
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSM 191
+ + L + L + GLM IP + + + ++ A+ ++ LSM
Sbjct: 144 AEVFELAELISRLPNLTLRGLMSIPANVSDYESQLREFQKLATLKQTLEAQFPEIDTLSM 203
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D AI +G+T VRIG+ IFG R
Sbjct: 204 GMSGDMTAAIEAGSTMVRIGTAIFGAR 230
>gi|225419736|ref|ZP_03762039.1| hypothetical protein CLOSTASPAR_06074 [Clostridium asparagiforme
DSM 15981]
gi|225041626|gb|EEG51872.1| hypothetical protein CLOSTASPAR_06074 [Clostridium asparagiforme
DSM 15981]
Length = 227
Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 117/229 (51%), Gaps = 13/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +L+ ++++ + + A R SV+L+AVSK ++ ++ A G F ENK+QE
Sbjct: 1 MMIKEQLEEVRERVNAACLRAGRDPKSVTLIAVSKTKPAQAVQEAYEAGARDFGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L + D++ IG LQ NKV +++ +I V + A + E K++ +
Sbjct: 61 ILQKQPALPQ--DIRWHMIGHLQRNKVHQVIGKAVLIHAVDSLRLAEQIEQEAAKRNLDV 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +++N E K G ++ + ++++GLM I P + NP+ + + ++
Sbjct: 119 DVLLEINVAKEESKYGFFLEDAEEAIRQISSLPHVHIKGLMTIAPFVENPEENRGIFQKL 178
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + LSMGM+ DFE+AI GAT VR+G+ IFG R
Sbjct: 179 YQFSVDINDKNIDNVTMGVLSMGMSGDFEVAIEEGATMVRVGTSIFGAR 227
>gi|188994039|ref|YP_001928291.1| hypothetical protein PGN_0175 [Porphyromonas gingivalis ATCC 33277]
gi|118200279|dbj|BAF37085.1| hypothetical protein [Porphyromonas gingivalis]
gi|188593719|dbj|BAG32694.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
33277]
Length = 224
Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 113/217 (52%), Gaps = 22/217 (10%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQL 76
IL P+ V L AVSK +++ A GQ +FAE+++QE +K + +P EW
Sbjct: 11 ILRSLPQ-GVRLAAVSKFHPVEELMEAYEAGQRVFAESRVQELMSKVEAMPDDVEW---- 65
Query: 77 RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG 136
FIG LQ+NKV IV +I++VS K +S + K R +PV ++V+ E KSG
Sbjct: 66 HFIGPLQTNKVKYIVPFISMIQSVSSLKLFDEISRQASKVGRTVPVLLEVHIASEDTKSG 125
Query: 137 IMPNQTKDFV--ILCR-QKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK----- 185
P + + +L R + + GLM + + + F L+ + RE K
Sbjct: 126 FTPEELPQVLEAVLARGSDTGVKIAGLMGMATFTDDREQIRREFRRLASLFREMKERFFS 185
Query: 186 ----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ DFELAI G+T VRIG+ IFGER
Sbjct: 186 DSADFCELSMGMSGDFELAIEEGSTIVRIGTTIFGER 222
>gi|301606812|ref|XP_002933001.1| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like [Xenopus (Silurana) tropicalis]
Length = 265
Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 124/239 (51%), Gaps = 24/239 (10%)
Query: 3 LGNKLQVFKQKIENSAI--LAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+G LQ +++++++A L P LVAVSK + A S GQ F EN +QE
Sbjct: 10 IGKALQCVRERVQHAAARRLKTLPAIDPRLVAVSKTKPVDMVIDAYSHGQRYFGENYVQE 69
Query: 61 -AKKKWIP--LRKEWDVQLRFIGSLQSNKVSEIVSLFD--VIETVSREKTASLLSLEMIK 115
A+K P L D++ FIG LQ ++++V + + ++ET+ K A ++ K
Sbjct: 70 LAEKASDPNLLASCPDIKWHFIGHLQKTHINKLVGVPNLYILETIDSIKLADKVNSSWQK 129
Query: 116 Q--SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAMG---- 168
+ S L V +QVNT E K G+ P +T + V R+K L GLM I + G
Sbjct: 130 KGSSEKLKVMVQVNTSSEDSKHGLAPTETTELVKHIREKCSSLEFVGLMTIG-SFGYDIT 188
Query: 169 -NPKPHFYLL----SEIARECKL----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P P F +L E+ + L +LSMGM+ DFE AI G+T+VRIGS IFGER
Sbjct: 189 QGPNPDFQMLLAQREEVCEKLGLQIDSVELSMGMSSDFEHAIEVGSTNVRIGSTIFGER 247
>gi|269965745|ref|ZP_06179842.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
gi|269829613|gb|EEZ83850.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
Length = 233
Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 102/207 (49%), Gaps = 11/207 (5%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD---VQLRFI 79
R +SV L+AVSK + I A GQ F EN +QE K + + ++ FI
Sbjct: 24 RTPESVQLLAVSKTKPVEAILEAYQAGQTAFGENYVQEGVSKVQHFAEHYPDNRIEWHFI 83
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G +QSNK + FD + T+ R K A L+ + + + L V IQVNT E KSG+
Sbjct: 84 GPIQSNKSRLVAEHFDWVHTIDRTKIAQRLNDQRPSELKPLQVLIQVNTSGEASKSGVTE 143
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSM 191
+ + L + L + GLM IP + + + ++ A+ ++ LSM
Sbjct: 144 AEVFELAELISRLPNLTLRGLMSIPANVSDYESQLREFQKLATLKQTLEAQFPEIDTLSM 203
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D AI +G+T VRIG+ IFG R
Sbjct: 204 GMSGDMTAAIEAGSTMVRIGTAIFGAR 230
>gi|218132469|ref|ZP_03461273.1| hypothetical protein BACPEC_00328 [Bacteroides pectinophilus ATCC
43243]
gi|217992579|gb|EEC58581.1| hypothetical protein BACPEC_00328 [Bacteroides pectinophilus ATCC
43243]
Length = 230
Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 113/229 (49%), Gaps = 17/229 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-- 60
L + L ++ I + + R + V+L+AVSK I + G F ENK+QE
Sbjct: 2 LSDNLHEVQENIRKACERSGRNPEDVTLIAVSKTKPVSDIEQIYAAGIREFGENKVQEMN 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+K +P D+ IG LQ NKV IV +I +V + A +S E +K++ +
Sbjct: 62 DKQKVLP----GDINWHMIGHLQRNKVKYIVDNVAMIHSVDSVRLAEEISKEAVKKNVAV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+ ++VN E K G+ FV + +N++GLM P + NP + +F L
Sbjct: 118 DILVEVNVAKEESKFGLYTEDVGQFVEQISKLPGINIKGLMTSAPFVDNPEDNRQYFKKL 177
Query: 178 SEIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+++ + + LSMGMT D+ +A+ GAT VR+G+ IFG R
Sbjct: 178 KDLSVDINAKNIDNVHMDFLSMGMTNDYVVAVEEGATHVRVGTAIFGHR 226
>gi|34541703|ref|NP_906182.1| hypothetical protein PG2126 [Porphyromonas gingivalis W83]
gi|34398021|gb|AAQ67081.1| conserved hypothetical protein TIGR00044 [Porphyromonas gingivalis
W83]
Length = 224
Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 113/217 (52%), Gaps = 22/217 (10%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQL 76
IL P+ V L AVSK +++ A GQ +FAE+++QE +K + +P EW
Sbjct: 11 ILRSLPQ-GVRLAAVSKFHPVEELMEAYEAGQRVFAESRVQELMSKVEAMPDDVEW---- 65
Query: 77 RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG 136
FIG LQ+NKV IV +I++VS K +S + K R +PV ++V+ E KSG
Sbjct: 66 HFIGPLQTNKVKYIVPFISMIQSVSSLKLFDEISRQASKVGRTVPVLLEVHIASEDTKSG 125
Query: 137 IMPNQTKDFV--ILCR-QKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK----- 185
P + + +L R + + GLM + + + F L+ + RE K
Sbjct: 126 FTPEELPQVLEAVLARGSDTGVKIAGLMGMATFTDDREQIRREFRRLASLFREMKERFFS 185
Query: 186 ----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ DFELAI G+T VRIG+ IFGER
Sbjct: 186 DSADFCELSMGMSGDFELAIEEGSTIVRIGTTIFGER 222
>gi|322384109|ref|ZP_08057827.1| hypothetical protein PL1_3547 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321151189|gb|EFX44498.1| hypothetical protein PL1_3547 [Paenibacillus larvae subsp. larvae
B-3650]
Length = 227
Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 113/233 (48%), Gaps = 25/233 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L ++ ++IE++ + R + V ++AV+K V L G EN+ Q+
Sbjct: 1 MQLQARISQVGKRIEDACRRSGRDPEDVQVIAVTKYVSLSATEQVLEHGLTHIGENRWQD 60
Query: 61 AKKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
AK KW L + W FIG LQ+NKV +++ F I ++ R L+LE+ KQ+
Sbjct: 61 AKGKWEKLGSQGTW----HFIGHLQTNKVKDVIGKFAYIHSLDRMS----LALEINKQAE 112
Query: 119 FL----PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---K 171
L P +IQ+N E K G+ P F + + + GLM + P P +
Sbjct: 113 KLQIVVPCFIQINVSGEESKYGMQPEDLFSFAEQVKPLKYIRIVGLMTMAPYETQPEQTR 172
Query: 172 PHFYLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
P F L + E ++ +LSMGM+ DFE+AI GAT VR+GS + G
Sbjct: 173 PVFTGLRNLRDELNERKVLPYEVKELSMGMSNDFEVAIEEGATWVRLGSVLVG 225
>gi|42527817|ref|NP_972915.1| hypothetical protein TDE2315 [Treponema denticola ATCC 35405]
gi|41818645|gb|AAS12834.1| conserved hypothetical protein TIGR00044 [Treponema denticola ATCC
35405]
Length = 275
Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 12/223 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ +++E + R V L+ +K V ++I A G+++ ENK+QE +K+
Sbjct: 38 LEEVHRRMEKACKACGRDLKEVRLLMATKTVTPERILKAFEYGELLIGENKVQELCEKYE 97
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
PL + FIG LQ+NK+ +++ D IE+V R A LS + + + + + IQV
Sbjct: 98 PLSS-VKHETHFIGHLQTNKIKDVIKYADCIESVDRLDLAEKLSKRLESEGKTMDILIQV 156
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAMGNPKPHFYLLSEIARE 183
NT E K G P + + L ++GLM I M + F LL +I +E
Sbjct: 157 NTSQEESKFGCKPEEALALTEKIAKLPCLKIKGLMTIGLFSDDMDKVRLCFKLLQKIRKE 216
Query: 184 --------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +SMGMT D E+AI G+T +R+G+ IFG+R
Sbjct: 217 ITEKNIPNVSMEVVSMGMTGDLEVAIEEGSTLIRVGTAIFGKR 259
>gi|15838318|ref|NP_299006.1| hypothetical protein XF1717 [Xylella fastidiosa 9a5c]
gi|9106783|gb|AAF84526.1|AE003995_8 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 266
Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 101/210 (48%), Gaps = 17/210 (8%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R SV+L+ VSK VD IR++ G ENK Q+A KW + D+ IG L
Sbjct: 49 RHPSSVTLLPVSKTVDEVHIRLSYEAGCRKLGENKAQDAYHKWEAMSDLTDLHWSVIGHL 108
Query: 83 QSNK---VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
Q+NK V+ S F ++++ + A L + + R L V IQVNT E K G+ P
Sbjct: 109 QTNKAKLVARFASEFQALDSL---RVAEALERRLQIEGRSLDVLIQVNTSGETNKYGLPP 165
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK------PHFYLLSEIAREC-----KLTK 188
+ FV L V GLM + G+ +L + ++ +T+
Sbjct: 166 EEVVRFVQALSAYPALRVRGLMTLALLSGDTSRVRQCFTQLRILRDRIQQASPQGHHITE 225
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D E+AI GAT VR+G I+G R
Sbjct: 226 LSMGMSGDLEIAIEEGATVVRVGQAIYGAR 255
>gi|298370551|ref|ZP_06981866.1| pyridoxal phosphate enzyme, YggS family [Neisseria sp. oral taxon
014 str. F0314]
gi|298281161|gb|EFI22651.1| pyridoxal phosphate enzyme, YggS family [Neisseria sp. oral taxon
014 str. F0314]
Length = 231
Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 101/214 (47%), Gaps = 8/214 (3%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I + A R V LVAV K + IR + GQ F EN +QE +K L
Sbjct: 14 QIAGAEASAGRSAGEVRLVAVGKTFPAGDIREVYAAGQRDFGENYIQEWYEKTEDLADLS 73
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
D+ IG +QSNK + + T+ R KTA LS + + L V I+VN E
Sbjct: 74 DIVWHIIGDVQSNKTKFVAERAHWVHTIGRLKTARRLSAQRPSEMPPLQVCIEVNIAGEA 133
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF----YLLSEI-AREC 184
K G+ P++ + L + GLMC+ A + F LL+E+ A
Sbjct: 134 AKHGVAPDEAVALACEVAKLPNLKMRGLMCVAKADAGEAELREAFGRMRALLAELNAAGV 193
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D ++A+A GAT VRIGS IFG R
Sbjct: 194 AADVLSMGMSGDMKIAVACGATHVRIGSAIFGRR 227
>gi|297544859|ref|YP_003677161.1| alanine racemase domain-containing protein [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842634|gb|ADH61150.1| alanine racemase domain protein [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 202
Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 102/198 (51%), Gaps = 12/198 (6%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
+A +K + I+ A++CG ENK+QE +K+ L++E V FIG LQ NKV I
Sbjct: 1 MAATKTFGVETIKEAIACGITDIGENKVQELNEKYPYLKEE--VNFHFIGHLQRNKVKYI 58
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
+ +I ++ K A + +++ + +++N G E K GI P +FV
Sbjct: 59 IDKVKLIHSLDSIKLAEEIDKRAKQKNLIIDCLVEINIGGEESKYGISPEGMHNFVKEIE 118
Query: 151 QKYQLNVEGLMCIPPAM--GNPKPHFYLLSEIARECKLTK--------LSMGMTRDFELA 200
+ + + GLM I P + +P+F + E+ E K K LSMGM+ D+ +A
Sbjct: 119 KYDNIRIRGLMTIAPYLPPEEVRPYFRKMKELFEELKEIKQHNVEVEFLSMGMSNDYWVA 178
Query: 201 IASGATSVRIGSGIFGER 218
+ GA VRIG+ IFG+R
Sbjct: 179 VEEGANIVRIGTSIFGQR 196
>gi|168010071|ref|XP_001757728.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691004|gb|EDQ77368.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 240
Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 112/232 (48%), Gaps = 30/232 (12%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLR 69
Q+I+ ++ A RP SV LVAVSK K IR G F EN +QE K P
Sbjct: 18 QRIQQASERANRPVSSVRLVAVSKTKPVKMIREVYDAGHRHFGENYVQELIDKAPQFPED 77
Query: 70 KEWDVQLRFIGSLQSNKVSEIVS----LFDVIETVSREKTASLLSLEMIKQSRF-LPVYI 124
+W FIG LQSNK +V+ L+ ++E V EK A L + R L V +
Sbjct: 78 TKW----HFIGHLQSNKAKALVTGVPNLY-MVEGVDSEKVADHLDKAVSGLGRPPLKVLV 132
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGN------PKPHFYLL 177
QVNT E KSG+ P+ + +K L+ G M I GN P+ L
Sbjct: 133 QVNTSGEASKSGVEPSNCVELAKHIEEKCPNLHFSGFMTI----GNLDYTSTPENFKTLA 188
Query: 178 SEIARECKLT-------KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
S + C+ +LSMGM+ DFELAI G+T+VR+GS IFG R T
Sbjct: 189 SCQEKTCRELGIPMEEFELSMGMSSDFELAIEMGSTNVRVGSTIFGAREYAT 240
>gi|125973310|ref|YP_001037220.1| hypothetical protein Cthe_0792 [Clostridium thermocellum ATCC
27405]
gi|256003791|ref|ZP_05428779.1| alanine racemase domain protein [Clostridium thermocellum DSM 2360]
gi|281417513|ref|ZP_06248533.1| alanine racemase domain protein [Clostridium thermocellum JW20]
gi|125713535|gb|ABN52027.1| Protein of unknown function UPF0001 [Clostridium thermocellum ATCC
27405]
gi|255992352|gb|EEU02446.1| alanine racemase domain protein [Clostridium thermocellum DSM 2360]
gi|281408915|gb|EFB39173.1| alanine racemase domain protein [Clostridium thermocellum JW20]
gi|316940457|gb|ADU74491.1| alanine racemase domain protein [Clostridium thermocellum DSM 1313]
Length = 234
Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 111/221 (50%), Gaps = 18/221 (8%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL--R 69
++IE +A + R ++LVAV+K V+ ++I L G V EN++QE KK+ L R
Sbjct: 17 ERIEKAAQKSGRSAKDITLVAVTKTVEPERIMKILDEGVVDLGENRVQELTKKYDILNSR 76
Query: 70 K-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
K +W IG LQ+NKV IV +I +V R + A + + + V +QVN
Sbjct: 77 KCKW----HLIGHLQTNKVKYIVDKVSLIHSVDRIELAREIQKRAESVGKTVDVLVQVNV 132
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-------EIA 181
E K G+ + V + V+GLM + P NP+ Y+ S +I
Sbjct: 133 SGEKSKFGVSVDDAYGLVREISFMPNIRVKGLMTMAPYAENPESVRYVFSKLRDLSIDIG 192
Query: 182 RE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E + LSMGM+ DFE+AI GA VRIG+ +FG R
Sbjct: 193 KEKFDNSNMEILSMGMSNDFEIAIEEGANMVRIGTALFGSR 233
>gi|319411450|emb|CBY91865.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
Length = 228
Score = 101 bits (251), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 99/206 (48%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AVSK S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGRKPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPPLQVCIEVNIAGEAVKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY----LLSEI-ARECKLTKLSMG 192
+ + + + V GLMC+ A + K F LL+++ A K LSMG
Sbjct: 142 EAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQTMRKLLADLNAAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|328907236|gb|EGG27002.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium sp. P08]
Length = 238
Score = 101 bits (251), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 114/236 (48%), Gaps = 17/236 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ N + + +I+++ R VSL+ VSK + A G +F ENK+Q+
Sbjct: 1 MSVANNVAAVRTRIDDACQACDRDPGEVSLLPVSKTKPPSMVDEAYQAGYRLFGENKVQD 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A K + + ++ IG LQ+NK + + + K A L + ++
Sbjct: 61 ALAKSELMDADHPGLEWAIIGGLQTNKAKYVARFAAEFQALDSLKVAHELDKRLQQEGHQ 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH-----F 174
L V +QVN+ E QKSGI P++ +F L+V GLM + A+ +P F
Sbjct: 121 LRVLVQVNSSAEPQKSGIAPDEAVEFARELAAFDSLDVRGLMTV--ALNSPDQQAVADCF 178
Query: 175 YLLS--------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER-PCQ 221
L++ E ++LSMGM+ D E+AIA G+T VRIG+ IFG R P Q
Sbjct: 179 DLVAATQEKLRQEAGDISSWSELSMGMSGDLEIAIAHGSTQVRIGTDIFGARDPAQ 234
>gi|303230544|ref|ZP_07317298.1| pyridoxal phosphate enzyme, YggS family [Veillonella atypica
ACS-049-V-Sch6]
gi|302514785|gb|EFL56773.1| pyridoxal phosphate enzyme, YggS family [Veillonella atypica
ACS-049-V-Sch6]
Length = 228
Score = 101 bits (251), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 98/203 (48%), Gaps = 11/203 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
D+ LVAV+K + G EN++QEAK+K + L + IG LQ N
Sbjct: 24 DTALLVAVTKNHPVTAVEEVARLGCTHVGENRVQEAKEKQM-LYTGPKLVWHLIGHLQVN 82
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV + V FD+I +V +K + K + + +QVN E KSG+ D
Sbjct: 83 KVRQAVPKFDLIHSVDSKKLLDEIEKVAAKHDKVQDILLQVNVAREASKSGMSVEDFPDI 142
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-------LTKLSMGMTR 195
+ + V+GLMC+ P NP +P F + + + K + LSMGMT
Sbjct: 143 RDYAKTLPHVRVKGLMCMAPFFENPEDARPIFRVAHALYEDMKGYFPDGDIQYLSMGMTH 202
Query: 196 DFELAIASGATSVRIGSGIFGER 218
DFE+A+ GA VR+G+ IFGER
Sbjct: 203 DFEIALQEGANIVRVGTAIFGER 225
>gi|182439218|ref|YP_001826937.1| hypothetical protein SGR_5425 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178467734|dbj|BAG22254.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 239
Score = 101 bits (251), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I ++ A R ++ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAQVEERIASACAAAGRKREEVTLIVVTKTYPASDVRILHQLGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + F+G LQ+NKV ++ DV+++V R K + LS ++ R L
Sbjct: 68 PKATAC-ADLSLTWHFVGQLQTNKVRSVIGYADVVQSVDRAKLVTALSAAAVRGERELGC 126
Query: 123 YIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPHF 174
IQV +G ++ G+ P+ + L ++GLM + P G + F
Sbjct: 127 LIQVALDAESGERGERGGVAPDGVAELAAAIGAAPGLRLDGLMTVAPLAGEFAGRQRAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L EI+ + +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 DRLMEISSRLRAGHPAANMVSAGMSGDLEDAVAAGATHVRVGTAVLGVRP 236
>gi|292487079|ref|YP_003529949.1| hypothetical protein EAMY_0591 [Erwinia amylovora CFBP1430]
gi|292900537|ref|YP_003539906.1| hypothetical protein EAM_2839 [Erwinia amylovora ATCC 49946]
gi|291200385|emb|CBJ47513.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
gi|291552496|emb|CBA19541.1| UPF0001 protein yggS [Erwinia amylovora CFBP1430]
Length = 237
Score = 101 bits (251), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 110/229 (48%), Gaps = 17/229 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +Q+I +A R ++L+AVSK + + A++ GQ F EN +QE
Sbjct: 3 SIKHNLQQVRQRISTAAAKCGRDPQEITLLAVSKTKPASAVEEAVAAGQCCFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K I L + FIG LQSNK + FD TV R + AS LS + L
Sbjct: 63 VDK-IQLLANPALAWHFIGPLQSNKSRLVAENFDWCHTVDRLRIASRLSQQRPDNLAPLN 121
Query: 122 VYIQVNTGYEIQKSGIM----PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
+ IQ+N E KSGIM P + L R L + GLM IP + +
Sbjct: 122 ILIQINISAEPSKSGIMLAELPALAQQIAALPR----LKLRGLMAIPAPQDSYDSQLAVC 177
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ K + LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 178 QQMTTAFKQLQQDYPGVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGAR 226
>gi|240017614|ref|ZP_04724154.1| hypothetical protein NgonFA_10711 [Neisseria gonorrhoeae FA6140]
gi|240119053|ref|ZP_04733115.1| hypothetical protein NgonPID_11449 [Neisseria gonorrhoeae PID1]
gi|240126744|ref|ZP_04739630.1| hypothetical protein NgonSK_11130 [Neisseria gonorrhoeae SK-92-679]
gi|240127124|ref|ZP_04739785.1| hypothetical protein NgonS_00445 [Neisseria gonorrhoeae SK-93-1035]
gi|268604767|ref|ZP_06138934.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268685321|ref|ZP_06152183.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268685481|ref|ZP_06152343.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|268588898|gb|EEZ53574.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268625605|gb|EEZ58005.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268625765|gb|EEZ58165.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
Length = 228
Score = 101 bits (251), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 98/206 (47%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SV L+AVSK S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGREPHSVGLIAVSKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V ++VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTAVRLSRQRRSLMPPLQVCVEVNIAGEAAKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY----LLSEI-ARECKLTKLSMG 192
+ + + L V GLMC+ A + K F LL+++ A K LSMG
Sbjct: 142 EAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQTMQKLLADLNAAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|240000010|ref|ZP_04719934.1| hypothetical protein Ngon3_11093 [Neisseria gonorrhoeae 35/02]
gi|240122409|ref|ZP_04735365.1| hypothetical protein NgonP_00436 [Neisseria gonorrhoeae PID332]
gi|268595816|ref|ZP_06129983.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268680997|ref|ZP_06147859.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268549205|gb|EEZ44623.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268621281|gb|EEZ53681.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
Length = 228
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 98/206 (47%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SV L+AVSK S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGREPHSVGLIAVSKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V ++VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTAVRLSRQRRSLMPPLQVCVEVNIAGEAAKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY----LLSEI-ARECKLTKLSMG 192
+ + + L V GLMC+ A + K F LL+++ A K LSMG
Sbjct: 142 EAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQAMQKLLADLNAAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|197284237|ref|YP_002150109.1| amino acid racemase [Proteus mirabilis HI4320]
gi|227357860|ref|ZP_03842208.1| amino acid racemase [Proteus mirabilis ATCC 29906]
gi|194681724|emb|CAR40875.1| putative amino acid racemase [Proteus mirabilis HI4320]
gi|227161970|gb|EEI46988.1| amino acid racemase [Proteus mirabilis ATCC 29906]
Length = 232
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 100/216 (46%), Gaps = 8/216 (3%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+ I+ +A R D ++L+AVSK I A++CGQ F EN +QE K +
Sbjct: 12 RSHIDTAAQKCGRSPDEITLLAVSKTKPVSDIEKAIACGQTEFGENYVQEGVDKISYFAE 71
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
++ FIG LQSNK + F T+ R K A LS + L V IQ+N
Sbjct: 72 NKNLVWHFIGPLQSNKTRLVAEHFAWCHTIDRLKIAQRLSDQRPTTLPPLNVLIQINISD 131
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK----- 185
E KSGI + + + GLM IP + +L ++ + K
Sbjct: 132 ENSKSGISLTELDGLAAQISILPGIKLRGLMAIPAPENDYNKQVEVLEKMHQAFKQLQNQ 191
Query: 186 ---LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGMT D E AIA G+T VRIG+ IFG R
Sbjct: 192 YPDIDTLSMGMTGDMEAAIACGSTLVRIGTAIFGAR 227
>gi|192291510|ref|YP_001992115.1| alanine racemase domain protein [Rhodopseudomonas palustris TIE-1]
gi|192285259|gb|ACF01640.1| alanine racemase domain protein [Rhodopseudomonas palustris TIE-1]
Length = 262
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 109/231 (47%), Gaps = 19/231 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L +++I + R V L+ V+K V + +R A + G F+ENKLQEA
Sbjct: 22 AFAANLTSVQERIAAACHRCGRSAGEVRLLPVTKTVPAGVLRRAYAAGISEFSENKLQEA 81
Query: 62 KKKW-----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ K +P+R W + IG LQ+NKV +V + + A L+ + +
Sbjct: 82 RDKRDILADLPIR--WSI----IGHLQTNKVKYLVRFAAEFHALDSLRLADELNRRLDAE 135
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPH 173
R L V++QVNT E K G+ P F+ +L GLM + +
Sbjct: 136 GRDLDVFVQVNTSGEASKYGLAPCDLVPFIERLSDYPRLKPRGLMTLAIFSAETERVRGC 195
Query: 174 FYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F LL ++ LT+LSMGM+ DFE AI GAT VR+G IFG RP
Sbjct: 196 FRLLRDLRDRAIRVHPDLTELSMGMSGDFEFAIEEGATVVRVGQAIFGARP 246
>gi|121633935|ref|YP_974180.1| hypothetical protein NMC0037 [Neisseria meningitidis FAM18]
gi|120865641|emb|CAM09361.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
Length = 228
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 96/206 (46%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AV K S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPPLQVCIEVNIAGEAAKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE-----CKLTKLSMG 192
+ + + L V GLMC+ A + K F + ++ + K LSMG
Sbjct: 142 EAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQTMQKLLADLNTAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|325201240|gb|ADY96694.1| conserved hypothetical protein TIGR00044 [Neisseria meningitidis
M01-240149]
Length = 228
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 97/206 (47%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AVSK S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGREPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPPLQVCIEVNIAGEAAKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE-----CKLTKLSMG 192
+ + + + V GLMC+ A + K F + ++ + K LSMG
Sbjct: 142 EAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQTMRKLLADLNTAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|312795172|ref|YP_004028094.1| hypothetical protein RBRH_01661 [Burkholderia rhizoxinica HKI 454]
gi|312166947|emb|CBW73950.1| Hypothetical cytosolic protein [Burkholderia rhizoxinica HKI 454]
Length = 234
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/224 (38%), Positives = 107/224 (47%), Gaps = 25/224 (11%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI---PL 68
++I A A R SV L+AVSK + IR A + GQ F EN +QEA K PL
Sbjct: 14 RRIAAVAAAAGRDPASVQLLAVSKTFPADAIRAAHAAGQQAFGENYVQEALDKIAALQPL 73
Query: 69 RK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
R EW FIG LQSNK + FD + +V R K A LS + L V +QV
Sbjct: 74 RASLEW----HFIGPLQSNKTRPVAEQFDWVHSVDRLKIAHRLSEQRPTHLPPLNVCVQV 129
Query: 127 NTGYEIQKSGIMPNQ----TKDFVILCRQKYQLNVEGLMCIP-PAMG---NPKPHFYLLS 178
N E K G+ P+ +D L R L + GLM IP P G PH L
Sbjct: 130 NVSGEASKHGVAPDDVATLARDVAALPR----LRLRGLMSIPEPVSGLHAQRAPHRRLRE 185
Query: 179 EI----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A+ L LSMGM+ D + AI GAT VR+G+ IFG R
Sbjct: 186 LFDAVNAQGLGLDTLSMGMSADLDAAILEGATIVRVGTAIFGPR 229
>gi|315293935|gb|EFU53287.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 153-1]
Length = 234
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 110/235 (46%), Gaps = 26/235 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRK------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K ++ EW FIG LQSNK + FD T+ R + A+ L+ +
Sbjct: 63 VDKIHHFQELGVTGLEW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPA 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V IQ+N E KSGI + + + +L + GLM IP P+ +
Sbjct: 119 ELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPA----PESEYV 174
Query: 176 LLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR+ + LS+GM+ D E AIA+G+T RIG+ IFG R
Sbjct: 175 RQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMGRIGTAIFGAR 229
>gi|315633758|ref|ZP_07889048.1| YggS family pyridoxal phosphate enzyme [Aggregatibacter segnis ATCC
33393]
gi|315477800|gb|EFU68542.1| YggS family pyridoxal phosphate enzyme [Aggregatibacter segnis ATCC
33393]
Length = 228
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 101/205 (49%), Gaps = 11/205 (5%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK-WIPLRKEWDVQLRFIGSLQ 83
+ +V L+AVSK + I A GQ+ F EN +QE +K +++ +++ FIG LQ
Sbjct: 23 QSAVKLLAVSKTKPIEDILTAYEAGQMAFGENYVQEGVEKIQFCQQQQIELEWHFIGPLQ 82
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
SNK + FD ++T+ R K A L+ + L V IQVN E KSG+ P+
Sbjct: 83 SNKTRLVAEYFDWMQTLERAKIADRLNEQRPPHKAPLNVLIQVNISNEASKSGVQPDDIL 142
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGN--------PKPH--FYLLSEIARECKLTKLSMGM 193
L + GLM IP + + H F L + ++ LSMGM
Sbjct: 143 PLAKHVENLPHLRLRGLMAIPEPTDDVVQQEQTFRQMHTLFEGLQQALPHAQIDTLSMGM 202
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
T D + AI G+T VR+G+ IFG+R
Sbjct: 203 TDDMQSAIKCGSTMVRVGTAIFGKR 227
>gi|51597523|ref|YP_071714.1| hypothetical protein YPTB3213 [Yersinia pseudotuberculosis IP
32953]
gi|186896646|ref|YP_001873758.1| alanine racemase domain-containing protein [Yersinia
pseudotuberculosis PB1/+]
gi|51590805|emb|CAH22451.1| Conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|186699672|gb|ACC90301.1| alanine racemase domain protein [Yersinia pseudotuberculosis PB1/+]
Length = 232
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 106/225 (47%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + +I +A R + V+L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K ++ FIG LQSNK + F TV R K A LS + L
Sbjct: 63 VDKIHSFADNKTLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPALN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
V IQ+N E K+GI ++ L + GLM IP + + + +++
Sbjct: 123 VLIQINISDEQSKAGISLSELPALADSISTLPNLCLRGLMAIPAPEHDYQRQLAVFTQMN 182
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
AR ++ LSMGMT D + AI++G+T VRIG+ IFG R
Sbjct: 183 QAFLTLKARYPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGAR 227
>gi|283835288|ref|ZP_06355029.1| pyridoxal phosphate enzyme, YggS family [Citrobacter youngae ATCC
29220]
gi|291068446|gb|EFE06555.1| pyridoxal phosphate enzyme, YggS family [Citrobacter youngae ATCC
29220]
Length = 234
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 111/227 (48%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAHVRDKISAAATRCGRSSEEVTLLAVSKTKPASAIEEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K R++ D+Q FIG LQSNK + FD T+ R + A+ LS + +
Sbjct: 63 VDKIRYFREQGVNDLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIAARLSEQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + ++ + GLM IP + F + +
Sbjct: 123 LNVLIQINISDENSKSGIPLTELDALAAEVAALPRITLRGLMAIPAPESDYVRQFEVAQQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A R + LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFTGLKTRYPGIDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGAR 229
>gi|254447389|ref|ZP_05060855.1| conserved hypothetical protein TIGR00044 [gamma proteobacterium
HTCC5015]
gi|198262732|gb|EDY87011.1| conserved hypothetical protein TIGR00044 [gamma proteobacterium
HTCC5015]
Length = 234
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 100/202 (49%), Gaps = 11/202 (5%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V L+AVSK + ++ GQ F EN LQ+A +K L ++ FIG +QSNK
Sbjct: 32 VKLLAVSKTKPAWMVKALYDKGQRDFGENYLQDALEKIEALGTLDEIHWHFIGQIQSNKT 91
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
+ I FD + +V R K A LS + ++ L + +Q+N E QK G+ P
Sbjct: 92 ATIAQYFDWVHSVDRFKIARRLSEQRPERLSALNLCLQINIDNEPQKGGVAPEDAAKLAR 151
Query: 148 LCRQKYQLNVEGLMCIP-PAMGNPK--PHFYLLSEIARECK--------LTKLSMGMTRD 196
L + GLM IP PA + F L ++ ++ K LSMGM+ D
Sbjct: 152 EIETLPNLRLRGLMAIPKPANSEEQQLASFKSLEDLFQQIKSQLKKAEDFDTLSMGMSGD 211
Query: 197 FELAIASGATSVRIGSGIFGER 218
E AIA+G+T VR+GS IFG R
Sbjct: 212 LESAIAAGSTMVRVGSDIFGAR 233
>gi|153947334|ref|YP_001399814.1| hypothetical protein YpsIP31758_0830 [Yersinia pseudotuberculosis
IP 31758]
gi|152958829|gb|ABS46290.1| conserved hypothetical protein TIGR00044 [Yersinia
pseudotuberculosis IP 31758]
Length = 232
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 104/221 (47%), Gaps = 8/221 (3%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
LQ + +I +A R + V+L+AVSK I A++ GQ F EN +QE K
Sbjct: 7 NLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQEGVDKI 66
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++ FIG LQSNK + F TV R K A LS + L + IQ
Sbjct: 67 HSFADNKTLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPALNILIQ 126
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI----- 180
+N E K+GI ++ L + GLM IP + + + +++
Sbjct: 127 INISDEQSKAGISLSELPALADSISTLPNLCLRGLMAIPAPEHDYQRQLAVFTQMNQAFL 186
Query: 181 ---ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
AR ++ LSMGMT D + AI++G+T VRIG+ IFG R
Sbjct: 187 TLKARSPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGAR 227
>gi|332297936|ref|YP_004439858.1| protein of unknown function UPF0001 [Treponema brennaborense DSM
12168]
gi|332181039|gb|AEE16727.1| protein of unknown function UPF0001 [Treponema brennaborense DSM
12168]
Length = 233
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 110/210 (52%), Gaps = 13/210 (6%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFI 79
A R + SV LVAVSK ++ + A++ GQ +F EN++QEA K+ +R + +L I
Sbjct: 22 AGRIRGSVRLVAVSKFHPAQAVLEAIASGQTLFGENRVQEAAAKFETVRAAYPAAELHII 81
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
GSLQ NKV V I++V R++ + + K + + V + +TG E KSG
Sbjct: 82 GSLQRNKVKSAVQCASCIQSVDRQELLEEIQKQAEKLGKKIRVLFEFHTG-EDSKSGFTD 140
Query: 140 NQTKDFVI-LCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEI-----AR--ECKLTK 188
+ I L G M + P + + F LS + AR E +LT+
Sbjct: 141 ADSVFRAIEFAESASCLVPAGFMTMAPFTQDSRLVSESFRKLSGLRTAAQARFPELELTE 200
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D+ +AIA GAT VRIG+ IFGER
Sbjct: 201 LSMGMSADYRIAIAEGATMVRIGTAIFGER 230
>gi|319943328|ref|ZP_08017610.1| alanine racemase domain protein [Lautropia mirabilis ATCC 51599]
gi|319743143|gb|EFV95548.1| alanine racemase domain protein [Lautropia mirabilis ATCC 51599]
Length = 278
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 102/233 (43%), Gaps = 27/233 (11%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L +IE + R +V L+ VSK IR A + G ENK+QEA K
Sbjct: 34 HNLAAVHARIEAACQRVGRDPATVRLLPVSKTKGEDAIRAAYAAGCRFLGENKVQEAYGK 93
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
W ++ D++ IG LQ+NK + + + + A L + + R L V++
Sbjct: 94 WQAMQDLTDLKWSVIGHLQTNKAKVVARFAAEFQALDSLRVAEALDKRLQAEGRSLDVFV 153
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVNT E K G+ P FV L V GLM + A+ F +E R+C
Sbjct: 154 QVNTSGEPSKFGLSPEDVPAFVQALPGFSALRVRGLMTL--AL------FSSEAERVRQC 205
Query: 185 -------------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+E+AI GAT VR+G IFG R
Sbjct: 206 FILLRSLRDRLRQEAPAGLSFDELSMGMSGDYEIAIEEGATVVRVGQAIFGAR 258
>gi|225027659|ref|ZP_03716851.1| hypothetical protein EUBHAL_01918 [Eubacterium hallii DSM 3353]
gi|224954973|gb|EEG36182.1| hypothetical protein EUBHAL_01918 [Eubacterium hallii DSM 3353]
Length = 230
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 104/207 (50%), Gaps = 13/207 (6%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R + V+LVAVSKM I L GQ+ + EN +QE K+ + K V IG L
Sbjct: 22 RKPEEVTLVAVSKMKPLSDIEELLETGQLEYGENYVQELCDKYENISKP--VHWHMIGHL 79
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q+NKV I+ ++I +V A + E +K+ + +QVN E K GI +
Sbjct: 80 QTNKVKYIIDKVELIHSVDSLHLAKQIEKEAVKKGVDAQILVQVNIAQEDTKFGIDGPEV 139
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEI---ARECKLTK-----LSM 191
V + +++ GLM P + NP+ +F L ++ RE + LSM
Sbjct: 140 MSLVEEISKFPHVHIRGLMTSAPFVANPEENRCYFKKLHKLFVDIREKNIDNVSMDILSM 199
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GMT D+E+AI GAT VR+G+GIFG R
Sbjct: 200 GMTNDYEVAIEEGATMVRVGTGIFGAR 226
>gi|157148501|ref|YP_001455820.1| hypothetical protein CKO_04327 [Citrobacter koseri ATCC BAA-895]
gi|157085706|gb|ABV15384.1| hypothetical protein CKO_04327 [Citrobacter koseri ATCC BAA-895]
Length = 234
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 111/231 (48%), Gaps = 20/231 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 4 IAHNLAHVRDKISAAATRCGRSSEEVTLLAVSKTKPASAIAEAIAVGQRAFGENYVQEGV 63
Query: 63 KKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K I KE V Q FIG LQSNK + FD T+ R + A+ LS +
Sbjct: 64 EK-IRHFKESGVEGLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIAARLSEQRPTGLPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + + GLM IP P+ + E
Sbjct: 123 LNVLIQINISDENSKSGIPLTELDALAASVVELPGIRLRGLMAIPA----PESDYVRQFE 178
Query: 180 IARECKLT------------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR+ + LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 179 VARQMAVAFAGLKTRYPGVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGAR 229
>gi|238927883|ref|ZP_04659643.1| TIM-barrel fold protein [Selenomonas flueggei ATCC 43531]
gi|238884216|gb|EEQ47854.1| TIM-barrel fold protein [Selenomonas flueggei ATCC 43531]
Length = 234
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 110/226 (48%), Gaps = 17/226 (7%)
Query: 8 QVFKQKIENSAILAKRPKDS----VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
Q+ K + E A A+R + S V L+AV+K ++ A+ G + EN++QEA
Sbjct: 5 QIRKVQAEIMAARARRTRVSKDAPVELIAVTKNHPVTAMQEAIDAGLMNIGENRIQEAMD 64
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K L +E V+ IG LQ+NK V LFD+I +V A + K + +
Sbjct: 65 KAETLERE--VKWHLIGHLQTNKAKHAVRLFDLIHSVDSVHLARAIDRAAEKFGKVQNIL 122
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVN E KSGI ++ + + ++G MCI P + +P F + E+
Sbjct: 123 VQVNLAREESKSGIYREDLEELLAAIDGMDSIRLQGFMCIAPNYEDVEQCRPLFRAMYEL 182
Query: 181 ARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ K + LSMGMT D+ +A+ GA VR+G+ IFG R
Sbjct: 183 FQQTKAAEPHKADIRYLSMGMTHDYRIAVEEGANLVRVGTAIFGAR 228
>gi|163814074|ref|ZP_02205466.1| hypothetical protein COPEUT_00227 [Coprococcus eutactus ATCC 27759]
gi|158450523|gb|EDP27518.1| hypothetical protein COPEUT_00227 [Coprococcus eutactus ATCC 27759]
Length = 231
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 117/227 (51%), Gaps = 28/227 (12%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVI-FAENKLQEAKKKWIPLR 69
+ +I+N+ + R + V+L+AVSK I L + I F ENK+QE K+ +
Sbjct: 10 RSRIDNACVRTGRNPEDVTLIAVSKTKPLSDIEEILRDTKAIDFGENKVQELVDKYENVS 69
Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
+ +V IG LQ+NKV IV +I +V A + E K + + + I+VN
Sbjct: 70 R--NVNWHMIGHLQTNKVKYIVDKVCMIHSVDSLNLAKTIEKEAAKHNVTVNILIEVNVA 127
Query: 130 YEIQKSG-----IMP--NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
E K G ++P N+ KDF + V+GLM I P + +P+ +F L +
Sbjct: 128 QEESKFGLACEEVLPLINEIKDFP-------HIRVKGLMTIAPFVDDPEDNRVYFRKLRD 180
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + + ++ LSMGMT D+E+A+ GAT VR+G+GIFG R
Sbjct: 181 LSLDIQSKSIDNIDMSVLSMGMTNDYEVAVEEGATLVRVGTGIFGAR 227
>gi|88811611|ref|ZP_01126865.1| putative alanine racemase [Nitrococcus mobilis Nb-231]
gi|88791002|gb|EAR22115.1| putative alanine racemase [Nitrococcus mobilis Nb-231]
Length = 252
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 103/228 (45%), Gaps = 28/228 (12%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+++I + A R + V L+ V+K V ++++R A G F ENK+QEA K L
Sbjct: 17 RRRIAQACARAGRAPEEVRLLPVTKTVAAERLRAAFVAGLTEFGENKIQEADAKAEHL-A 75
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
+ V IG LQ+NK + V + + + A L + R L V +QVNT
Sbjct: 76 DLPVTWSIIGHLQTNKAKQAVRFAREFQALDSLRLAEALERRLQGAGRGLDVLVQVNTSA 135
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC------ 184
E K G+ P DF+ L V GLM + A+ +P + R C
Sbjct: 136 EASKFGLAPEAVADFLRALPAFSALRVRGLMTL--AVFDPD------TVRVRACFRRLRV 187
Query: 185 -------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +LSMGM+ DFE A+ GAT VR+G IFG RP
Sbjct: 188 LRDRLRDAAPPAIALDELSMGMSGDFEAAVEEGATVVRVGQAIFGARP 235
>gi|304413270|ref|ZP_07394743.1| alanine racemase N-terminal domain-containing hypothetical protein
[Candidatus Regiella insecticola LSR1]
gi|304284113|gb|EFL92506.1| alanine racemase N-terminal domain-containing hypothetical protein
[Candidatus Regiella insecticola LSR1]
Length = 230
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 101/219 (46%), Gaps = 14/219 (6%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
K++I ++A R VSL+AVSK I+ A++ GQ F EN +QEA K
Sbjct: 12 KKQIASAAEHCGRSPKEVSLLAVSKTQSVSAIKKAINAGQYAFGENYVQEAIDKIAYFAH 71
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
++ FIG LQSNK + F TV K A LS + L + IQ+N
Sbjct: 72 HSKLEWHFIGLLQSNKSRLVAEYFTWCHTVDSLKIAQRLSHQRPGNMPALNILIQINISG 131
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH-----------FYLLSE 179
E KSGI N+ L + GLM IP A N P F LL E
Sbjct: 132 EKSKSGISLNELPQLAENIYTLPNLQLRGLMAIPAA-DNDYPRQLAIFQQMHQAFLLLKE 190
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LS+GMT D AI +G+T VRIG+ IFG R
Sbjct: 191 --NYPQVDTLSLGMTHDMTAAIHAGSTLVRIGTAIFGSR 227
>gi|300900232|ref|ZP_07118416.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 198-1]
gi|300356248|gb|EFJ72118.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 198-1]
Length = 234
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 110/235 (46%), Gaps = 26/235 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAQAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRK------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K ++ EW FIG LQSNK + FD T+ R + A+ L+ +
Sbjct: 63 VDKIRHFQELGVTGLEW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPA 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V IQ+N E KSGI + + + +L + GLM IP P+ +
Sbjct: 119 ELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPA----PESEYV 174
Query: 176 LLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+AR+ + LS+GM+ D E AIA+G+T RIG+ IFG R
Sbjct: 175 RQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMGRIGTAIFGAR 229
>gi|183596314|ref|ZP_02958342.1| hypothetical protein PROSTU_00049 [Providencia stuartii ATCC 25827]
gi|188023918|gb|EDU61958.1| hypothetical protein PROSTU_00049 [Providencia stuartii ATCC 25827]
Length = 231
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 103/230 (44%), Gaps = 16/230 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + K +IE +A R ++L+AVSK I A+ GQ F EN +QE
Sbjct: 1 MTIQRNISDVKARIERAAAECHRSAQDITLLAVSKTKPCDAILEAIEAGQRQFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D+ FIG LQSNK + FD T+ R+K A L+ + L
Sbjct: 61 GVEKIQFFADRQDLVWHFIGPLQSNKSRLVAEHFDWFHTLDRQKIAQRLNDQRPSNKAPL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQ+N E KSGI + + Q L GLM IP P+ + E
Sbjct: 121 NVLIQINISDENSKSGIKLEEFDELAKQVSQMPNLVFRGLMTIPA----PESDYQRQCEA 176
Query: 181 ARECK------------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R+ + + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 177 FRKMEQAYQQLQTHYPSVDTLSMGMTDDMAAAIHCGSTLVRIGTAIFGAR 226
>gi|78048625|ref|YP_364800.1| hypothetical protein XCV3069 [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325925537|ref|ZP_08186925.1| pyridoxal phosphate enzyme, YggS family [Xanthomonas perforans
91-118]
gi|78037055|emb|CAJ24794.1| conserved hypothetical protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325544041|gb|EGD15436.1| pyridoxal phosphate enzyme, YggS family [Xanthomonas perforans
91-118]
Length = 230
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 94/203 (46%), Gaps = 15/203 (7%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---EWDVQLRFIGSLQ 83
V L+AVSK + + + GQ F EN +QEA K LR EW IG LQ
Sbjct: 24 DVRLLAVSKTKPADAVAALAAQGQRAFGENYVQEADAKIAQLRALGLEW----HLIGHLQ 79
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
SNK FD ++TV R K LL+ L V IQVN E K G P
Sbjct: 80 SNKAELASQCFDWVQTVDRAKLIPLLARHRPADRAPLNVLIQVNIDDEDSKHGCAPEAID 139
Query: 144 DFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI-----ARECKLTKLSMGMTR 195
+ +L + GLM IP P + F + + AR ++ LSMGM+
Sbjct: 140 SLAEAIALQPRLQLRGLMAIPAPFPDQARRQAAFMRMQALFEQLQARHRQVDTLSMGMSS 199
Query: 196 DFELAIASGATSVRIGSGIFGER 218
DF AIA+GAT VR+G+ +FG R
Sbjct: 200 DFAEAIAAGATMVRVGTALFGAR 222
>gi|268638068|ref|XP_001134585.2| hypothetical protein DDB_G0278713 [Dictyostelium discoideum AX4]
gi|284018110|sp|Q1ZXI6|PROSC_DICDI RecName: Full=Proline synthase co-transcribed bacterial homolog
protein
gi|256012994|gb|EAS66901.2| hypothetical protein DDB_G0278713 [Dictyostelium discoideum AX4]
Length = 255
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 116/227 (51%), Gaps = 28/227 (12%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
I K + +V LVAVSK ++ IR+ G F EN +QE K L + +++ F
Sbjct: 24 ISNKFDRHNVKLVAVSKTKPTEMIRILYDKGHRHFGENYIQELVSKSEELSELNEIKWHF 83
Query: 79 IGSLQSNK---VSEIVSLFDVIETVSREKTASLLS-----------LEMIKQSRFLPVYI 124
IGS+QSNK ++ + +L+ V+ETV +K L+ ++ L + I
Sbjct: 84 IGSIQSNKSKILTSVKNLY-VVETVENKKILDKLAKSLLNNEENNNNNNNNNNKKLNIMI 142
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQ----KYQLNVEGLMCIPPAMGNP-KPHFYLL-- 177
QVNT E KSG P + D V C + K LN GLM I P +P F L
Sbjct: 143 QVNTSGEESKSGCKPEECLDLVKHCLEDNNCKNSLNFLGLMTIGNPNATPDQPDFKCLVD 202
Query: 178 --SEIARECKL----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ I+++ + +LSMGM+ DFE AI G+TSVR+GS IFGER
Sbjct: 203 CKNNISKQLNIPLDSIELSMGMSHDFEPAIEFGSTSVRVGSAIFGER 249
>gi|71281809|ref|YP_270331.1| hypothetical protein CPS_3663 [Colwellia psychrerythraea 34H]
gi|71147549|gb|AAZ28022.1| conserved hypothetical protein TIGR00044 [Colwellia psychrerythraea
34H]
Length = 239
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 106/209 (50%), Gaps = 11/209 (5%)
Query: 20 LAKRPKDS--VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
LA+ K S VSL+AVSK + + A GQ F EN LQEA +K L ++
Sbjct: 28 LAELSKQSSPVSLLAVSKTKPTSLVEQAYLAGQHDFGENYLQEAVEKIAELANLPEIVWH 87
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF---LPVYIQVNTGYEIQK 134
FIG +QSNK +I S F + +V REK A L+ + + L + +QVN E K
Sbjct: 88 FIGPIQSNKTKQIASNFSWVHSVDREKIALRLNQHLTDDNCHDTPLNICLQVNISNEESK 147
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK-----LTKL 189
SGI Q + +L + GLM +P PK + + ++ + K + L
Sbjct: 148 SGISIEQVFSLAKIVDSCDKLTLRGLMAVPEKNA-PKACYEQMQQLFTQLKKQYPSVDTL 206
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
S+GM+ D + A+A G+T VRIG+ IFG R
Sbjct: 207 SLGMSNDLDNAVAHGSTMVRIGTAIFGAR 235
>gi|260775566|ref|ZP_05884463.1| hypothetical protein VIC_000944 [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608747|gb|EEX34912.1| hypothetical protein VIC_000944 [Vibrio coralliilyticus ATCC
BAA-450]
Length = 238
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 106/230 (46%), Gaps = 13/230 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE + RP SV L+AVSK I A GQV F EN +QE
Sbjct: 3 SIQQNIEQITSQIEAAQQKCGRPLGSVQLLAVSKTKPFDAILEAARAGQVAFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + E ++ FIG +QSNK + F + TV R K A L+ + ++
Sbjct: 63 VDKVAYFAENHPELTLEWHFIGPIQSNKTRHVAESFAWVHTVDRAKIAQRLNDQRPQEMA 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG ++ L L + GLM IP + + + S
Sbjct: 123 PLQVLIQVNTSSESSKSGASDDEIFALAELISSLPNLTLRGLMSIPANVSDYQSQLAAFS 182
Query: 179 EIAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A E L LSMGM+ D E AI +G T VRIG+ IFG R
Sbjct: 183 HLAELKNRLAQRYPELNLDTLSMGMSGDMEAAIEAGTTMVRIGTAIFGAR 232
>gi|317049428|ref|YP_004117076.1| alanine racemase domain-containing protein [Pantoea sp. At-9b]
gi|316951045|gb|ADU70520.1| alanine racemase domain protein [Pantoea sp. At-9b]
Length = 235
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 97/201 (48%), Gaps = 8/201 (3%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ ++L+AVSK + A++ GQ F EN +QE +K L D+Q FIG LQSN
Sbjct: 27 EEITLLAVSKTKPVSAVEEAIAAGQRAFGENYVQEGVEKVTTLAAHPDLQWHFIGPLQSN 86
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
K + F TV R++ A L+ + L V IQVN E KSGIM
Sbjct: 87 KSRLVAEHFGWCHTVDRQRIAQRLNDQRPAHLPPLNVLIQVNISDENSKSGIMLEALPAL 146
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--------LTKLSMGMTRDF 197
QL + GLM IP + + ++A + + LS+GM+ D
Sbjct: 147 AQEISALPQLCLRGLMAIPAPEQDYDRQLAVCQQMAAAFRALQQDYPDVDTLSLGMSDDM 206
Query: 198 ELAIASGATSVRIGSGIFGER 218
E AIA+G+T VRIG+ +FG R
Sbjct: 207 EAAIAAGSTMVRIGTAVFGAR 227
>gi|299069051|emb|CBJ40302.1| Putative alanine racemase domain-containing enzyme with a
tim-barrel fold protein (fragment) [Ralstonia
solanacearum CMR15]
Length = 98
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 60/93 (64%)
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
+N G E QK+G++P + + CR YQLNV GLMCIPPA +P HF L IA +
Sbjct: 1 MNIGKEPQKAGVLPAEAPALIGECRDVYQLNVRGLMCIPPAGLDPSGHFAGLRSIAEDHG 60
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ D+ AIA GAT VR+GS +FG R
Sbjct: 61 LHILSMGMSADYPQAIAQGATHVRVGSALFGAR 93
>gi|194364708|ref|YP_002027318.1| alanine racemase domain-containing protein [Stenotrophomonas
maltophilia R551-3]
gi|194347512|gb|ACF50635.1| alanine racemase domain protein [Stenotrophomonas maltophilia
R551-3]
Length = 225
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 102/215 (47%), Gaps = 11/215 (5%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+ +A A RP L+AVSK ++ + + GQ F EN +QEA K L +
Sbjct: 11 NLHAAAEAAGRPDPR--LLAVSKTQPAEAVAALAAQGQHAFGENYVQEALAKMQAL-QHL 67
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
D++ IG LQSNK + S FD +++V R K + L+ L V IQVN E
Sbjct: 68 DLEWHLIGHLQSNKAEAVASHFDWVQSVDRPKLVTALARHRPVARGPLNVLIQVNIDDES 127
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL-----SEIAREC 184
K G P + L + GLM IP P + F + S + +
Sbjct: 128 SKHGCAPEDVDALAAAIAAEPSLRLRGLMAIPAPWPEAERRRDAFVRMRTLFQSLVTQHA 187
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ LSMGM+ D+ AIA GAT VRIG+ +FG RP
Sbjct: 188 QIDTLSMGMSSDYAEAIAEGATLVRIGTALFGARP 222
>gi|261822844|ref|YP_003260950.1| alanine racemase domain protein [Pectobacterium wasabiae WPP163]
gi|261606857|gb|ACX89343.1| alanine racemase domain protein [Pectobacterium wasabiae WPP163]
Length = 237
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 108/228 (47%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ +Q+I +A R + ++L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDIRQQIATAAQHCARSPEDITLLAVSKTKPVSAIEEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K ++ + ++ FIG LQSNK + FD TV R + A LS +
Sbjct: 63 VEKVHYFQENHPDTPLEWHFIGPLQSNKSRLVAENFDWFHTVDRLRIAQRLSEQRPTTLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L + +Q+N E KSGIM + + L + GLM IP + + +
Sbjct: 123 PLNILLQINISSEPSKSGIMVAELAELATSVAVLPNLRLRGLMAIPAPETDYEQQIAVFK 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A + LSMGMT D AI +G+T VRIG+ IFG R
Sbjct: 183 QMAALLQTLSVNYPHIDTLSMGMTDDMRAAITAGSTLVRIGTAIFGAR 230
>gi|118200267|dbj|BAF37074.1| hypothetical protein [Porphyromonas gingivalis]
Length = 224
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 113/217 (52%), Gaps = 22/217 (10%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQL 76
IL P+ V L AVSK +++ A GQ +FAE+++QE +K + +P EW
Sbjct: 11 ILRSLPQ-GVRLAAVSKFHPVEELMEAYEAGQRVFAESRVQELMSKVEAMPDDVEW---- 65
Query: 77 RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG 136
FIG LQ+NKV IV +I++VS K +S + K R +PV ++V+ E KSG
Sbjct: 66 HFIGPLQTNKVKYIVPFISMIQSVSSLKLFDEISRQASKVGRTVPVLLEVHIASEDTKSG 125
Query: 137 IMPNQTKDFV--ILCR-QKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK----- 185
P + + +L R + + GLM + + + F L+ + RE +
Sbjct: 126 FTPEELPQVLEAVLARGSDTGVKIAGLMGMATFTDDREQIRREFRRLASLFREMRERFFS 185
Query: 186 ----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ DFELAI G+T VRIG+ IFGER
Sbjct: 186 DSADFCELSMGMSGDFELAIEEGSTIVRIGTTIFGER 222
>gi|255067482|ref|ZP_05319337.1| pyridoxal phosphate enzyme, YggS family [Neisseria sicca ATCC
29256]
gi|255048277|gb|EET43741.1| pyridoxal phosphate enzyme, YggS family [Neisseria sicca ATCC
29256]
Length = 235
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 100/206 (48%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R V L+AVSK S IR + GQ F EN +QE +K L D+ IG
Sbjct: 22 AGRQAGEVGLIAVSKTFPSDDIREVYAAGQRDFGENYIQEWYEKTETLADLPDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + T+ R KTA LS + + L V I+VN E K G+ P+
Sbjct: 82 DVQSNKTKFVAERAHWVHTIGRLKTARRLSEQRPSEMPPLQVCIEVNIAGEEAKHGVAPD 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFY----LLSEI-ARECKLTKLSMG 192
+ + + + V GLMC+ A + + F LL+++ A LSMG
Sbjct: 142 EAVALAVEVAKLPNVVVRGLMCVAKADSDDEELRVQFQTMQKLLADLNAAGVHADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D +A+A GAT VRIGS IFG R
Sbjct: 202 MSDDMPVAVACGATHVRIGSAIFGRR 227
>gi|94313040|ref|YP_586249.1| hypothetical protein Rmet_4113 [Cupriavidus metallidurans CH34]
gi|93356892|gb|ABF10980.1| conserved hypothetical protein [Cupriavidus metallidurans CH34]
Length = 286
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 99/215 (46%), Gaps = 27/215 (12%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R V L+ VSK IR+A + G + ENK QEA +KW L D+Q IG L
Sbjct: 51 RDPAGVRLLPVSKAKPEASIRLAHAAGCRLLGENKPQEAYRKWEALADLEDLQWSVIGHL 110
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q+NK + + + A L + + R L V++QVNT E K G+ P++
Sbjct: 111 QTNKAKLAARFATEFQALDSLRVAEALDRRLQIEGRALDVFVQVNTSGEASKFGLHPDEV 170
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC------------------ 184
F+ L V GLM + A+ + + SE R+C
Sbjct: 171 PGFLRALPAFSGLRVRGLMTL--ALLSAE------SERVRQCFVLLRELRERLRQDAPVG 222
Query: 185 -KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 223 IGLDELSMGMSGDFEIAIEEGATVVRVGQAIFGAR 257
>gi|163803737|ref|ZP_02197595.1| FkuA [Vibrio sp. AND4]
gi|159172456|gb|EDP57324.1| FkuA [Vibrio sp. AND4]
Length = 236
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 101/209 (48%), Gaps = 12/209 (5%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD---VQLR 77
+ PK SV L+AVSK + I A GQ F EN +QE K K + ++
Sbjct: 23 GRSPK-SVKLLAVSKTKPDEAIVEAYQAGQEAFGENYVQEGVSKVQHFAKHYPDNRIEWH 81
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
FIG +QSNK + FD + T+ R K A L+ + + + L V IQVNT E KSG+
Sbjct: 82 FIGPIQSNKSRPVAEHFDWVHTIDRAKIAQRLNDQRPNELKPLQVLIQVNTSGEESKSGV 141
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR--------ECKLTKL 189
+ + L + L + GLM IP + + + ++ + + L
Sbjct: 142 ADAEIFELAELISRLPNLTLRGLMSIPANVPDYQSQLRAFKQLEKLKQKLAQQYSDVDTL 201
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMGM+ D AI +G+T VRIG+ IFG R
Sbjct: 202 SMGMSGDMGAAIEAGSTMVRIGTAIFGAR 230
>gi|326779870|ref|ZP_08239135.1| protein of unknown function UPF0001 [Streptomyces cf. griseus
XylebKG-1]
gi|326660203|gb|EGE45049.1| protein of unknown function UPF0001 [Streptomyces cf. griseus
XylebKG-1]
Length = 239
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 110/230 (47%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I ++ A R ++ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAQVEERIASACAAAGRKREEVTLIVVTKTYPASDVRILHQLGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + F+G LQ+NKV + DV+++V R K + LS ++ R L
Sbjct: 68 PKATAC-ADLSLTWHFVGQLQTNKVRSVTGYADVVQSVDRAKLVTALSAAAVRGERELGC 126
Query: 123 YIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPHF 174
IQV +G ++ G+ P+ + L ++GLM + P G + F
Sbjct: 127 LIQVALDAESGERGERGGVAPDGVAELAAAIGAAPGLRLDGLMTVAPLAGEFAGRQRAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L EI+ + +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 DRLMEISSRLRAGHPAANMVSAGMSGDLEDAVAAGATHVRVGTAVLGVRP 236
>gi|160882640|ref|ZP_02063643.1| hypothetical protein BACOVA_00593 [Bacteroides ovatus ATCC 8483]
gi|237718405|ref|ZP_04548886.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|260173862|ref|ZP_05760274.1| hypothetical protein BacD2_18472 [Bacteroides sp. D2]
gi|299149060|ref|ZP_07042122.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 3_1_23]
gi|315922125|ref|ZP_07918365.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|156111955|gb|EDO13700.1| hypothetical protein BACOVA_00593 [Bacteroides ovatus ATCC 8483]
gi|229452338|gb|EEO58129.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|298513821|gb|EFI37708.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 3_1_23]
gi|313696000|gb|EFS32835.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 222
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 111/214 (51%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+LA+ P+ V LVAVSK ++ I A GQ IF E+K+QE K+ L K D++ F
Sbjct: 10 VLAELPQ-GVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQEMTAKYESLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK+ ++ +I + K + ++ + +K R + +Q++ E K G
Sbjct: 67 IGHLQTNKIKYMIPYVAMIHGIDSYKLLAEVNKQAVKAGRTVNCLLQIHVAQEETKFGFS 126
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPP---AMGNPKPHFYLLSEIARECKLT------ 187
P + K+ + K +V GLM + + F LL+ + E K T
Sbjct: 127 PEECKEMLNAGEWKELTHVRICGLMGMASNTDCIEQINREFGLLNRLFNEIKTTWFIHSD 186
Query: 188 ---KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 187 TFCELSMGMSHDYHEAIAAGSTLVRVGSKIFGER 220
>gi|17227982|ref|NP_484530.1| hypothetical protein alr0486 [Nostoc sp. PCC 7120]
gi|17129831|dbj|BAB72444.1| alr0486 [Nostoc sp. PCC 7120]
Length = 222
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 109/205 (53%), Gaps = 15/205 (7%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SV L+AV+K + ++ IR A + G F EN++QEA K L D+ FIG LQ+NK
Sbjct: 19 SVRLIAVTKQMPTEVIRAAYAAGIRDFGENRIQEAASKKAQLHDLPDITWHFIGHLQANK 78
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP-VYIQVNTGYEIQKSG-IMPNQTKD 144
+ + F I +V K A L ++ +Q P V +QV + KSG +P D
Sbjct: 79 AKKALEQFQWIHSVDNLKLAQRLD-QLAQQLGVNPQVCLQVKILPDPNKSGWTVPELLTD 137
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-------EIARE----CKLTKLSMGM 193
L K L ++GLM IPP N FY+ + +IA + + +LSMGM
Sbjct: 138 LPALNHCK-TLQIQGLMTIPPFGLNDAEIFYVFNTTYKLAKDIAEQNWDHIHMGQLSMGM 196
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D++LA+ +GAT VR+G+ +FG+R
Sbjct: 197 SGDYQLAVQAGATMVRLGTILFGQR 221
>gi|293371408|ref|ZP_06617839.1| pyridoxal phosphate enzyme, YggS family [Bacteroides ovatus SD CMC
3f]
gi|292633605|gb|EFF52163.1| pyridoxal phosphate enzyme, YggS family [Bacteroides ovatus SD CMC
3f]
Length = 222
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 111/214 (51%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+LA+ P+ V LVAVSK ++ I A GQ IF E+K+QE K+ L K D++ F
Sbjct: 10 VLAELPQ-GVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQEMTAKYESLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK+ ++ +I + K + ++ + +K R + +Q++ E K G
Sbjct: 67 IGHLQTNKIKYMIPYVAMIHGIDSYKLLAEVNKQAVKAGRTVNCLLQIHVAQEETKFGFS 126
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPP---AMGNPKPHFYLLSEIARECKLT------ 187
P + K+ + K +V GLM + + F LL+ + E K T
Sbjct: 127 PEECKEMLNAGEWKELTHVRICGLMGMASNTDCIEQINWEFGLLNRLFNEIKTTWFIHSD 186
Query: 188 ---KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 187 TFCELSMGMSHDYHEAIAAGSTLVRVGSKIFGER 220
>gi|325919600|ref|ZP_08181612.1| pyridoxal phosphate enzyme, YggS family [Xanthomonas gardneri ATCC
19865]
gi|325549936|gb|EGD20778.1| pyridoxal phosphate enzyme, YggS family [Xanthomonas gardneri ATCC
19865]
Length = 230
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 94/203 (46%), Gaps = 15/203 (7%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---EWDVQLRFIGSLQ 83
V L+AVSK + + V + GQ F EN +QEA+ K L EW IG LQ
Sbjct: 24 DVRLLAVSKTRPADALAVLAAQGQRAFGENYVQEAQAKIAELHALGLEW----HLIGHLQ 79
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
SNK FD ++TV R K LL+ L V IQVN E K G P
Sbjct: 80 SNKAELASQCFDWVQTVDRAKLIPLLARYRPDDRAPLNVLIQVNIDDEDSKHGCAPEAID 139
Query: 144 DFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI-----ARECKLTKLSMGMTR 195
+ +L + GLM IP P F + + R ++ LSMGM+
Sbjct: 140 ALARDIALQPRLQLRGLMAIPAPFPEQARRAAAFTRMQALFEDLKGRYPQVDTLSMGMSS 199
Query: 196 DFELAIASGATSVRIGSGIFGER 218
DF AIA+GAT VR+G+ +FGER
Sbjct: 200 DFAEAIAAGATMVRVGTALFGER 222
>gi|146284538|ref|YP_001165491.1| alanine racemase domain-containing protein [Enterobacter sp. 638]
gi|145320671|gb|ABP62817.1| alanine racemase domain protein [Enterobacter sp. 638]
Length = 269
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 105/221 (47%), Gaps = 7/221 (3%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L + +I+ + + R V L+ VSK +D K IR+A G ENK+QEA +K
Sbjct: 37 DNLAAVQSRIDAACQRSGRNVSDVRLLPVSKTMDEKHIRMAHQAGCNFLGENKVQEAWRK 96
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ D++ IG LQSNK + + + TA +L + + R L V++
Sbjct: 97 SQAMLDLTDLKWSVIGHLQSNKAKLVARFASEFQALDSFNTAEILDRRLQVEGRTLNVFV 156
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY----LL 177
QVNT E K G+ P DF+ + + GLM + + + F L
Sbjct: 157 QVNTSAEPSKFGLAPETVVDFMAQLSTLKNIKLIGLMTLAEFTSDAERVRSCFIRLRKLR 216
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A +LSMGM+ DFE+AI GA VR+G IFG R
Sbjct: 217 DQLANVYGNLQLSMGMSGDFEIAIEEGANIVRVGQAIFGAR 257
>gi|108806321|ref|YP_650237.1| hypothetical protein YPA_0324 [Yersinia pestis Antiqua]
gi|108813298|ref|YP_649065.1| hypothetical protein YPN_3138 [Yersinia pestis Nepal516]
gi|145597881|ref|YP_001161957.1| hypothetical protein YPDSF_0574 [Yersinia pestis Pestoides F]
gi|149367050|ref|ZP_01889083.1| hypothetical protein YPE_2328 [Yersinia pestis CA88-4125]
gi|167468160|ref|ZP_02332864.1| hypothetical protein YpesF_09734 [Yersinia pestis FV-1]
gi|170023081|ref|YP_001719586.1| alanine racemase domain-containing protein [Yersinia
pseudotuberculosis YPIII]
gi|218928113|ref|YP_002345988.1| hypothetical protein YPO0941 [Yersinia pestis CO92]
gi|229837634|ref|ZP_04457796.1| predicted enzyme [Yersinia pestis Pestoides A]
gi|229840860|ref|ZP_04461019.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229842579|ref|ZP_04462734.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195]
gi|229903761|ref|ZP_04518874.1| predicted enzyme [Yersinia pestis Nepal516]
gi|108776946|gb|ABG19465.1| hypothetical protein YPN_3138 [Yersinia pestis Nepal516]
gi|108778234|gb|ABG12292.1| hypothetical protein YPA_0324 [Yersinia pestis Antiqua]
gi|115346724|emb|CAL19607.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145209577|gb|ABP38984.1| hypothetical protein YPDSF_0574 [Yersinia pestis Pestoides F]
gi|149290664|gb|EDM40740.1| hypothetical protein YPE_2328 [Yersinia pestis CA88-4125]
gi|169749615|gb|ACA67133.1| alanine racemase domain protein [Yersinia pseudotuberculosis YPIII]
gi|229679531|gb|EEO75634.1| predicted enzyme [Yersinia pestis Nepal516]
gi|229690889|gb|EEO82943.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195]
gi|229697226|gb|EEO87273.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229704322|gb|EEO91333.1| predicted enzyme [Yersinia pestis Pestoides A]
gi|320013977|gb|ADV97548.1| putative enzyme [Yersinia pestis biovar Medievalis str. Harbin 35]
Length = 232
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 106/225 (47%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + +I +A R + V+L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K ++ FIG LQSNK + F TV R K A LS + L
Sbjct: 63 VDKIHSFVDNKTLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPALN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
V IQ+N E K+GI ++ L + GLM IP + + + +++
Sbjct: 123 VLIQINISDEQSKAGISLSELPALADSISTLPNLCLRGLMAIPAPEHDYQRQLAVFTQMN 182
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
AR ++ LSMGMT D + AI++G+T VRIG+ IFG R
Sbjct: 183 QAFLTLKARYPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGAR 227
>gi|195505095|ref|XP_002099361.1| GE23404 [Drosophila yakuba]
gi|194185462|gb|EDW99073.1| GE23404 [Drosophila yakuba]
Length = 254
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 116/231 (50%), Gaps = 28/231 (12%)
Query: 19 ILAKRPKDSVS----LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP---LRKE 71
+L +RPK+ + LVAVSK ++ + A GQ F EN +QE ++K L K
Sbjct: 25 VLLQRPKEVAAARPLLVAVSKTKPAEAVIEAYEAGQRDFGENYVQELEEKSRHPDILAKC 84
Query: 72 WDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIKQ----SRFLPVYIQ 125
D++ FIG +QSNK+++++S+ +I+TV EK A+ L KQ L V IQ
Sbjct: 85 PDIRWHFIGHMQSNKINKVLSVPNLRMIQTVDSEKLATKLDAAWSKQQPTPEEPLQVLIQ 144
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMG-----NPKPHFYLLSE 179
+NT E KSGI R LN+ G+M I A G P P F L +
Sbjct: 145 INTSGEDVKSGIEAKDAPALYQFIRSNLKHLNLLGIMTIG-AYGFDYSNGPNPDFVSLMQ 203
Query: 180 IARE-CKLTKL-------SMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ R C+ L SMGM+ DF+ AI G+T VR+GS IFG R +
Sbjct: 204 VHRAICEAHSLAPDSVLVSMGMSNDFDKAIEMGSTVVRVGSSIFGHRAAKA 254
>gi|294102393|ref|YP_003554251.1| alanine racemase domain protein [Aminobacterium colombiense DSM
12261]
gi|293617373|gb|ADE57527.1| alanine racemase domain protein [Aminobacterium colombiense DSM
12261]
Length = 234
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 113/226 (50%), Gaps = 15/226 (6%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKK 64
+++ + IE A + R + L+A++K +++ A+ G + EN++QEA+ K
Sbjct: 9 NVELIRNSIEEGAAKSGRQAHEIKLIAITKNHAVEEMVTAIRDAGIMYIGENRVQEAQTK 68
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+E Q +G LQ NK + + +F I+++ E A L ++ +R + V +
Sbjct: 69 ICSWPEEVQAQWHLVGHLQRNKARKALEIFHTIQSLESESLAERLERICVEMNRTVQVLL 128
Query: 125 QVNTGYEIQKSGIMPNQTK---DFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+VNT E K G+ P + DFVI + L+V G M + P + + F LL
Sbjct: 129 EVNTSGETSKHGVAPKDVQALLDFVI--EKCPSLHVAGFMTVGPLTDDENRVREAFALLR 186
Query: 179 EIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + L +LSMGM+ DF+ AI G+T VRIG+ IFG R
Sbjct: 187 NLRDDLSSSTGVSLPELSMGMSGDFQWAIEEGSTMVRIGTAIFGPR 232
>gi|289670426|ref|ZP_06491501.1| hypothetical protein XcampmN_18558 [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 230
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 96/205 (46%), Gaps = 15/205 (7%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---EWDVQLRFIGS 81
+ V L+AVSK ++ + + GQ F EN +QEA+ K LR EW IG
Sbjct: 22 RTDVRLLAVSKTKPAEAVAGLAAQGQRAFGENYVQEAEAKIAQLRALGLEW----HLIGH 77
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQSNK FD ++TV R K LL+ L V IQ+N E K G P
Sbjct: 78 LQSNKAELASQCFDWVQTVDRAKLIPLLARHRPDDRAPLNVLIQLNIDDEDSKHGCAPEA 137
Query: 142 TKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI-----ARECKLTKLSMGM 193
+ +L + GLM IP P + F + + R ++ LSMGM
Sbjct: 138 IDSLAEAIALQPRLQLRGLMAIPAPFPEQARRQAAFTRMQALFEQLKTRHRQVDTLSMGM 197
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ DF AIA+GAT VR+G+ +FG R
Sbjct: 198 SSDFAEAIAAGATMVRVGTALFGAR 222
>gi|297199060|ref|ZP_06916457.1| alanine racemase domain-containing protein [Streptomyces sviceus
ATCC 29083]
gi|197715987|gb|EDY60021.1| alanine racemase domain-containing protein [Streptomyces sviceus
ATCC 29083]
Length = 239
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 114/235 (48%), Gaps = 24/235 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +Q+I + A R ++ V+L+ V+K + +R+ G AENK Q+A
Sbjct: 8 LAANLAKVEQRIAAACAAAGRGREEVTLIVVTKTYPASDVRILSELGVRHVAENKDQDAA 67
Query: 63 KKW-----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K +PL W F+G LQ+NKV +V D++++V R K + LS E +K
Sbjct: 68 PKAAECSDLPL--TW----HFVGQLQTNKVRSVVGYADLVQSVDRSKLVTALSKEAVKAE 121
Query: 118 RFLPVYIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---- 169
R + IQV + ++ G+ P + L + L ++GLM + P G
Sbjct: 122 REVGCLIQVALDAGSSERGERGGVAPGGIGELAGLVARAPGLRLDGLMTVAPLTGEYAGR 181
Query: 170 PKPHFYLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ F L +++ + + +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 182 EQAAFERLMDLSTDLRRDHPAANMVSAGMSADLEQAVAAGATHVRVGTAVLGVRP 236
>gi|22127203|ref|NP_670626.1| hypothetical protein y3327 [Yersinia pestis KIM 10]
gi|45443239|ref|NP_994778.1| hypothetical protein YP_3501 [Yersinia pestis biovar Microtus str.
91001]
gi|162421828|ref|YP_001604768.1| hypothetical protein YpAngola_A0138 [Yersinia pestis Angola]
gi|165924910|ref|ZP_02220742.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937218|ref|ZP_02225782.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010377|ref|ZP_02231275.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166212690|ref|ZP_02238725.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167399806|ref|ZP_02305324.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167421909|ref|ZP_02313662.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167426713|ref|ZP_02318466.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|270487539|ref|ZP_06204613.1| pyridoxal phosphate enzyme, YggS family [Yersinia pestis KIM D27]
gi|21960269|gb|AAM86877.1|AE013933_14 hypothetical protein y3327 [Yersinia pestis KIM 10]
gi|45438107|gb|AAS63655.1| Predicted enzyme with a TIM-barrel fold [Yersinia pestis biovar
Microtus str. 91001]
gi|162354643|gb|ABX88591.1| conserved hypothetical protein TIGR00044 [Yersinia pestis Angola]
gi|165914692|gb|EDR33305.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923110|gb|EDR40261.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990863|gb|EDR43164.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166205982|gb|EDR50462.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166960046|gb|EDR56067.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167050514|gb|EDR61922.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167054316|gb|EDR64135.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|270336043|gb|EFA46820.1| pyridoxal phosphate enzyme, YggS family [Yersinia pestis KIM D27]
Length = 242
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 106/225 (47%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + +I +A R + V+L+AVSK I A++ GQ F EN +QE
Sbjct: 13 TIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQEG 72
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K ++ FIG LQSNK + F TV R K A LS + L
Sbjct: 73 VDKIHSFVDNKTLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPALN 132
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
V IQ+N E K+GI ++ L + GLM IP + + + +++
Sbjct: 133 VLIQINISDEQSKAGISLSELPALADSISTLPNLCLRGLMAIPAPEHDYQRQLAVFTQMN 192
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
AR ++ LSMGMT D + AI++G+T VRIG+ IFG R
Sbjct: 193 QAFLTLKARYPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGAR 237
>gi|218130110|ref|ZP_03458914.1| hypothetical protein BACEGG_01697 [Bacteroides eggerthii DSM 20697]
gi|217987614|gb|EEC53942.1| hypothetical protein BACEGG_01697 [Bacteroides eggerthii DSM 20697]
Length = 222
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 110/214 (51%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+L + P+ V LVAVSK ++ I A S GQ +F E+K+QE K+ L K D++ F
Sbjct: 10 VLDELPQ-GVQLVAVSKFHPNEAIEEAYSAGQRVFGESKVQEMTAKYESLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK+ I+ +I V K + ++ + K R + +Q++ E K G
Sbjct: 67 IGHLQTNKIKYIIPYVALIHGVDSYKLLTEINKQAAKAERTVNCLLQLHIAQEETKFGFS 126
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNP---KPHFYLLSEIARECKLT------ 187
++ ++ + K N+ GLM + N K F LS +E K T
Sbjct: 127 FDECREMLAANEWKQLKNIRICGLMGMATNTDNTEQIKAEFCSLSSFFQEVKATWFADAE 186
Query: 188 ---KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 187 WFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGER 220
>gi|42522074|ref|NP_967454.1| hypothetical protein Bd0466 [Bdellovibrio bacteriovorus HD100]
gi|39574605|emb|CAE78447.1| unnamed protein product [Bdellovibrio bacteriovorus HD100]
Length = 219
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 20/208 (9%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
++AVSK+ ++K+R GQ +F EN +QEA +K L D+Q IG LQ NK
Sbjct: 15 ILAVSKLQPAEKVRALHVEGQRLFGENYVQEALEKQSVLSDLSDIQWHLIGHLQKNKAKL 74
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI----MPNQTKDF 145
+V F +I +V + A ++S + ++ + IQVN E K G + NQ +
Sbjct: 75 VVGKFHLIHSVDSLELAQVISRQCEQKGVSQNILIQVNLAGEASKEGFSAETLENQWAEL 134
Query: 146 VILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLSEIARECK---------LTKLSMGM 193
L L++ GLM +PP +P+F L ++ K L +LSMG
Sbjct: 135 TKLP----HLHIYGLMTMPPLTETGAEVRPYFAELRQLRDRLKTTTDTTVHPLNELSMGT 190
Query: 194 TRDFELAIASGATSVRIGSGIFGERPCQ 221
+ D+ +A+ GAT VR+G+ +FGERP +
Sbjct: 191 SHDYPVAVEEGATIVRLGTILFGERPAK 218
>gi|88859059|ref|ZP_01133700.1| hypothetical protein PTD2_08644 [Pseudoalteromonas tunicata D2]
gi|88819285|gb|EAR29099.1| hypothetical protein PTD2_08644 [Pseudoalteromonas tunicata D2]
Length = 244
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 101/207 (48%), Gaps = 13/207 (6%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK--WIPLRKEWDVQLRFI 79
++P SVSL+AVSK ++ I A G F E+ +QEA +K IP D++ FI
Sbjct: 34 QKPAKSVSLLAVSKTKPAQLIIDAYHAGHRKFGESYVQEAVEKIQQIPFN---DIEWHFI 90
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G +QSNK I F ++++ R K A L+ + L V IQVN E KSG
Sbjct: 91 GPIQSNKTKAIAEHFSWVQSIERPKIAERLNQQRPTNLPPLNVLIQVNISGEQSKSGCNL 150
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSM 191
Q QL + GLM IP + S++ A+ + LSM
Sbjct: 151 ADVAALSAHISQSKQLVLRGLMAIPAPSDDQAQLIASFSQLKTCFDTLKAQYPSIDTLSM 210
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 211 GMSADVEAAIAAGSTMVRIGTDIFGAR 237
>gi|304404025|ref|ZP_07385687.1| alanine racemase domain protein [Paenibacillus curdlanolyticus YK9]
gi|304347003|gb|EFM12835.1| alanine racemase domain protein [Paenibacillus curdlanolyticus YK9]
Length = 238
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 113/233 (48%), Gaps = 22/233 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L ++Q ++I + + R + V++VAV+K V + +R ++ + EN+ Q A
Sbjct: 6 TLAERIQEVDKRITAACERSGRDRRDVNVVAVTKYVSLETVRDVVAHDVLHLGENRWQNA 65
Query: 62 KKKWIPLRKE-------WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
K KW ++ W +IGSLQS K +++ F I ++ R ++
Sbjct: 66 KPKWEAFNEQPANEQPVW----HYIGSLQSKKAKDVIGKFTYIHSLDRISLVEAIADRAD 121
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---K 171
K +P +IQVN E K G+ P + + F+ +Q + GLM + P P +
Sbjct: 122 KLGLVVPCFIQVNVSGEASKQGLEPEELESFIRTLKQFPSIKPIGLMTMAPFEAEPEETR 181
Query: 172 PHFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
P F L + + LT+LSMGM+ DFE+AI GAT VR+G+ + G
Sbjct: 182 PVFRELRLLRDKLNAQGILDEPLTELSMGMSNDFEVAIEEGATWVRLGTILVG 234
>gi|54310240|ref|YP_131260.1| TIM-barrel fold family protein [Photobacterium profundum SS9]
gi|46914681|emb|CAG21458.1| Predicted enzyme with a TIM-barrel fold [Photobacterium profundum
SS9]
Length = 244
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 113/228 (49%), Gaps = 18/228 (7%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N QV Q I +S R DSV L+AVSK I A++ GQ F EN +QE +K
Sbjct: 18 NIEQVISQ-ITSSTEKCGRTADSVQLLAVSKTKPIAAIDDAIAVGQRAFGENYVQEGVEK 76
Query: 65 ---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ + ++ FIG +QSNK I FD + +V R KTA L+ + L
Sbjct: 77 VQHFAGHAQAEEIVWHFIGPIQSNKTRPIAEHFDWVHSVDRIKTARRLNEQRPSSMAPLN 136
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY---QLNVEGLMCIP---PAMGNPKPHFY 175
+ +QVNT E KSGI D L + L + GLM IP + + F
Sbjct: 137 ILLQVNTSGEESKSGI---HVTDLAALADEIATMPNLVLRGLMSIPQKADSYDSQYAAFK 193
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL++ ++ ++ LSMGM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 194 LLADAQQQLHIKYPQIDTLSMGMSGDMDAAIAAGSTIVRIGTAIFGAR 241
>gi|21220560|ref|NP_626339.1| hypothetical protein SCO2080 [Streptomyces coelicolor A3(2)]
gi|5689952|emb|CAB51989.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 239
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 114/235 (48%), Gaps = 24/235 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +Q+I ++ A RP+ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAKVEQRITDACAAAGRPRQDVTLIVVTKTYPADDVRILSELGVRHVAENRDQDAA 67
Query: 63 KKW-----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K +PL W F+G LQ+NKV +V DV+++V R + + LS E ++
Sbjct: 68 PKAAACSDLPL--SW----HFVGQLQTNKVRSVVGYADVVQSVDRARLVTALSKEAVRAG 121
Query: 118 R----FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA----MGN 169
R L V + G ++ G+ P ++ L L ++GLM + P G
Sbjct: 122 REVGCLLQVALDAEEGGRGERGGVPPAGIEELADLVAGSEGLRLDGLMTVAPLSGEYAGR 181
Query: 170 PKPHFYLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ F L +++ + T +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 182 QQAAFEHLMDLSTRVRRTHPAANMVSAGMSADLEQAVAAGATHVRVGTAVLGVRP 236
>gi|254976212|ref|ZP_05272684.1| putative alanine racemase [Clostridium difficile QCD-66c26]
gi|255093599|ref|ZP_05323077.1| putative alanine racemase [Clostridium difficile CIP 107932]
gi|255101787|ref|ZP_05330764.1| putative alanine racemase [Clostridium difficile QCD-63q42]
gi|255307655|ref|ZP_05351826.1| putative alanine racemase [Clostridium difficile ATCC 43255]
gi|255315347|ref|ZP_05356930.1| putative alanine racemase [Clostridium difficile QCD-76w55]
gi|255518012|ref|ZP_05385688.1| putative alanine racemase [Clostridium difficile QCD-97b34]
gi|255651128|ref|ZP_05398030.1| putative alanine racemase [Clostridium difficile QCD-37x79]
gi|260684194|ref|YP_003215479.1| putative alanine racemase [Clostridium difficile CD196]
gi|260687853|ref|YP_003218987.1| putative alanine racemase [Clostridium difficile R20291]
gi|260210357|emb|CBA64716.1| putative alanine racemase [Clostridium difficile CD196]
gi|260213870|emb|CBE05885.1| putative alanine racemase [Clostridium difficile R20291]
Length = 234
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 18/231 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L + KI+ +A R ++L+AV+K VD + A+ G ENK QE
Sbjct: 3 SIKDNLSEIRNKIDKAAKKVDRDSKEITLLAVTKTVDVDLVNEAMREGITSVGENKPQEL 62
Query: 62 KKKW--IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K+ I + W IG+LQ+NKV I+ +I ++ R + + +R
Sbjct: 63 ARKYDIIGDKLNW----HLIGTLQTNKVKYIIDKVCMIHSLDRIALCEEIQKRAEQINRE 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ-LNVEGLMCIPPAMGNP---KPHFY 175
+ +QVN E K G+ + DFV +KY+ + ++GLM + P + + + F
Sbjct: 119 IDCLVQVNISKEESKHGLDREEVVDFVKEVSEKYKNIKIKGLMTMAPFIEDEDEIRGVFK 178
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +++++ K + LSMGM+ D+E+AI GAT VR+G+ IFGER
Sbjct: 179 GLKDLSKQIKELNIPNVGMDVLSMGMSHDYEIAIEEGATIVRVGTSIFGER 229
>gi|28211286|ref|NP_782230.1| proline synthetase associated protein [Clostridium tetani E88]
gi|28203726|gb|AAO36167.1| proline synthetase associated protein [Clostridium tetani E88]
Length = 225
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 11/215 (5%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
EN + K ++V+L+AVSK + I A + G F ENK+QE +K +KE D+
Sbjct: 8 ENLHAIKKEIGNNVNLIAVSKTKPIEDIDKAYNLGIRDFGENKVQELVEKIDKFQKE-DI 66
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
+ IG LQ NKV IV +I ++ + + + + + V IQ+N G + K
Sbjct: 67 RWHLIGHLQRNKVKYIVGKVYLIHSLDSIRLLKEIERKYKDEDKVAKVLIQINIGEDENK 126
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLSEIARECK------- 185
GI + +D + C + + +EGLM I P + K +F + +I + K
Sbjct: 127 YGIKVEELEDMIKACEECSNVKIEGLMTILPMEDSEICKRYFKQMKKIFDDLKNRSFKNI 186
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ LSMGM+ D+++AI G+ +R+G GIFG+R
Sbjct: 187 EMKYLSMGMSGDYKIAIEEGSNMIRVGQGIFGKRD 221
>gi|317476602|ref|ZP_07935847.1| YggS family pyridoxal phosphate enzyme [Bacteroides eggerthii
1_2_48FAA]
gi|316907198|gb|EFV28907.1| YggS family pyridoxal phosphate enzyme [Bacteroides eggerthii
1_2_48FAA]
Length = 222
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 110/214 (51%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+L + P+ V LVAVSK ++ I A S GQ +F E+K+QE K+ L K D++ F
Sbjct: 10 VLDELPQ-GVQLVAVSKFHPNEAIEEAYSAGQRVFGESKVQEMTAKYESLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK+ I+ +I V K + ++ + K R + +Q++ E K G
Sbjct: 67 IGHLQTNKIKYIIPYVALIHGVDSYKLLTEINKQAAKAERTVNCLLQLHIAQEETKFGFS 126
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNP---KPHFYLLSEIARECKLT------ 187
++ ++ + K N+ GLM + N K F LS +E K T
Sbjct: 127 FDECREMLAANEWKQFKNIRICGLMGMATNTDNTEQIKAEFCSLSSFFQEVKATWFADAE 186
Query: 188 ---KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 187 WFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGER 220
>gi|311742793|ref|ZP_07716602.1| YggS family pyridoxal phosphate enzyme [Aeromicrobium marinum DSM
15272]
gi|311314421|gb|EFQ84329.1| YggS family pyridoxal phosphate enzyme [Aeromicrobium marinum DSM
15272]
Length = 234
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 109/229 (47%), Gaps = 14/229 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ + +I+ + A R + ++LV V+K + + + G EN+ EA
Sbjct: 7 LAAGLRAVEARIDAACAGAGRRRADITLVVVTKTHPASDVEILADLGVRHVGENRHPEAG 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + D+ F+G++Q+NK + DV+ +V R K + LS + R L
Sbjct: 67 RKAEEV--AADLTWHFLGAVQTNKAGAVTRYADVVHSVDRPKLVASLSRGAVAAGRELGA 124
Query: 123 YIQVNTG-----YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH-FYL 176
+QV+ G +SG +P + + L L ++G+M + P +G P F
Sbjct: 125 LVQVDLGPAHGQESDGRSGALPAEVERLAALVADAEGLRLDGVMTVAP-LGVPALGVFDD 183
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L EIA + T +S GM+ D E A+A+GAT +R+G I GERP
Sbjct: 184 LREIAEAVRRDHPGATTISAGMSADLEQAVAAGATHLRVGRSILGERPA 232
>gi|315604725|ref|ZP_07879788.1| alanine racemase domain protein [Actinomyces sp. oral taxon 180
str. F0310]
gi|315313737|gb|EFU61791.1| alanine racemase domain protein [Actinomyces sp. oral taxon 180
str. F0310]
Length = 233
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 114/234 (48%), Gaps = 20/234 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQ-----VIFAE 55
MS+ + + + +I+++ R DSV+L K ++ R A + + ++
Sbjct: 1 MSIPDAIAAARDRIDHATSACGR-TDSVTLELAVKTRTPEECRAAATALRDAGLPILLGH 59
Query: 56 NKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
N++QEA+ +R+ ++ IG LQSNK++ +S D IE++ A+ + +
Sbjct: 60 NRVQEARSTVDAIREVPGARVHLIGPLQSNKINHALSCVDAIESLDSPALAAKID---AR 116
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAMGNPKP 172
S LPV+++VN E K G P+ + L + G M + P + +
Sbjct: 117 ASVRLPVFVEVNVSGEATKHGCAPSDVAALINAVEASAHLQLAGFMTVGLNSPVEADVRA 176
Query: 173 HFYLL----SEIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L E ARE + + LSMGM+RD E AIA GAT VR+G+ +FGER
Sbjct: 177 AYARLRTIRGEAARELGVGEEALELSMGMSRDLEWAIAEGATIVRLGTAVFGER 230
>gi|284991679|ref|YP_003410233.1| alanine racemase domain-containing protein [Geodermatophilus
obscurus DSM 43160]
gi|284064924|gb|ADB75862.1| alanine racemase domain protein [Geodermatophilus obscurus DSM
43160]
Length = 246
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 100/209 (47%), Gaps = 20/209 (9%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW-----IPLRKEWDVQLRFIGSL 82
V L+AVSK + +R + GQ F EN+ QE K +PLR W FIG L
Sbjct: 29 VRLLAVSKTWPADAVRELAALGQADFGENRAQELTGKAAELADLPLR--W----HFIGQL 82
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----IQKSGIM 138
Q NK + + L V+ +V R A L+ ++ R + V++QV+ G + G
Sbjct: 83 QRNKAAAVARLGAVVHSVDRLSLARALARVGVETGRPVEVFLQVDLGGPEGELAARGGAD 142
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK-----LSMGM 193
P + + L + GLM + P P P F L+ +A+ + LS GM
Sbjct: 143 PAEVPALADAVAAEEGLALRGLMAVAPRGAAPGPAFGRLAALAQRVRADHPEALDLSAGM 202
Query: 194 TRDFELAIASGATSVRIGSGIFGERPCQT 222
+ D E A+A+G+T +R+G+ +FG RP +
Sbjct: 203 SADLEEAVAAGSTLLRVGTALFGTRPLAS 231
>gi|193213296|ref|YP_001999249.1| alanine racemase domain-containing protein [Chlorobaculum parvum
NCIB 8327]
gi|193086773|gb|ACF12049.1| alanine racemase domain protein [Chlorobaculum parvum NCIB 8327]
Length = 229
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 107/227 (47%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L +++I + A R D V+L+AVSK + +R A GQ F E+ +QE
Sbjct: 3 SISSNLAAVREQIAEACRKAGRSVDEVTLIAVSKTKSAAAVRKAWEAGQREFGESYVQEF 62
Query: 62 KKKW-IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K P V FIG LQSNKV +IV ++ + + TA LS ++ +
Sbjct: 63 LEKCEAPELSGLPVSWHFIGHLQSNKVRQIVDKVTMVHGIDKVSTAEELSKRAVQHGLNV 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE 179
++VN E K G+ P+ C + + GLM I P + F L E
Sbjct: 123 DFLLEVNVSREGTKYGLGPDSVLQAAEECFALPNVRLRGLMTIASPDPDTARREFSELRE 182
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L++LSMGM+ DFE AI GAT +RIG+ IFG R
Sbjct: 183 TLDMIRNNAPEPAALSELSMGMSGDFEEAILEGATMIRIGTAIFGWR 229
>gi|156975833|ref|YP_001446740.1| hypothetical protein VIBHAR_03578 [Vibrio harveyi ATCC BAA-1116]
gi|156527427|gb|ABU72513.1| hypothetical protein VIBHAR_03578 [Vibrio harveyi ATCC BAA-1116]
Length = 236
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 102/211 (48%), Gaps = 19/211 (9%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA-------KKKWIPLRKEWDVQ 75
R +SV L+AVSK + I A GQ F EN +QE + + R EW
Sbjct: 24 RSPESVQLLAVSKTKPVEAILEAYQAGQEAFGENYVQEGVGKVQHFAEHYPDNRIEW--- 80
Query: 76 LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKS 135
FIG +QSNK + FD + T+ R K A L+ + + + L IQVNT E KS
Sbjct: 81 -HFIGPIQSNKSRPVAEHFDWVHTIDRAKIAQRLNDQRPSELKPLQALIQVNTSGEESKS 139
Query: 136 GIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIAREC-----KLT 187
G+ + + L + L + GLM IP P + F L E+ ++ +
Sbjct: 140 GVADAEIFELAELISRLPNLTLRGLMSIPANVPDYESQLRAFKQLEELKQKLAQQYPDVD 199
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D + AI +G+T VRIG+ IFG R
Sbjct: 200 TLSMGMSGDMDAAIEAGSTMVRIGTAIFGAR 230
>gi|50084121|ref|YP_045631.1| hypothetical protein ACIAD0913 [Acinetobacter sp. ADP1]
gi|49530097|emb|CAG67809.1| conserved hypothetical protein; putative enzyme [Acinetobacter sp.
ADP1]
Length = 234
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 99/204 (48%), Gaps = 7/204 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A+R +V L+AVSK +R GQ F EN LQEA K I + D++ FIG
Sbjct: 27 AQRDPATVQLLAVSKTHPDSALREMYQLGQRAFGENYLQEALDK-IEALDDLDIEWHFIG 85
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+Q NK + FD + V R A LS + ++ L + IQVN ++ K G P
Sbjct: 86 HVQRNKTKLLAEKFDWVHGVDRLIIAERLSSQRLQTQPPLNLCIQVNIDHQDSKDGCQPE 145
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPP-----AMGNPKPHFYLL-SEIARECKLTKLSMGMT 194
V Q Q+ + G+M IP A + K F + S + LSMGM+
Sbjct: 146 DVAQLVEEISQLPQVRLRGIMVIPAPDQITAFTDAKQLFEQVKSHHQQPQDWDTLSMGMS 205
Query: 195 RDFELAIASGATSVRIGSGIFGER 218
D + AIA+GA+ VRIG+ +FG R
Sbjct: 206 GDLQQAIAAGASIVRIGTALFGAR 229
>gi|302380630|ref|ZP_07269095.1| pyridoxal phosphate enzyme, YggS family [Finegoldia magna
ACS-171-V-Col3]
gi|303234039|ref|ZP_07320688.1| pyridoxal phosphate enzyme, YggS family [Finegoldia magna BVS033A4]
gi|302311573|gb|EFK93589.1| pyridoxal phosphate enzyme, YggS family [Finegoldia magna
ACS-171-V-Col3]
gi|302494964|gb|EFL54721.1| pyridoxal phosphate enzyme, YggS family [Finegoldia magna BVS033A4]
Length = 226
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 118/236 (50%), Gaps = 31/236 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L + ++ A + PK L+AV+K VD +I+ A+ CG ENK QE
Sbjct: 1 MSIKDNLNEVNENLKKFASHGETPK----LIAVTKTVDIDRIKEAIDCGVTDIGENKPQE 56
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR-------EKTASLLSLEM 113
K+ L+ V IG LQSNKV ++V +I ++ R EK AS ++
Sbjct: 57 MSWKYDELKDS--VNYHMIGHLQSNKVKDVVGKACLIHSLDRMSVLKEIEKRASAIN--- 111
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP- 172
+ IQ+N E QKSG+ + F+ ++ + V+GLM I P +P+
Sbjct: 112 ----KPQDCLIQLNVAEEEQKSGLYLDDLDSFIEEIEKRKFVKVKGLMSIAPFADDPEEI 167
Query: 173 --HFYLLSEIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
F + EI + K T+ LSMGM+ D+++A+ G+ VR+GS IFG+R
Sbjct: 168 RWVFKKMREIYDKIKNTEYKNIEMKYLSMGMSHDYKVALEEGSNMVRVGSFIFGKR 223
>gi|289664572|ref|ZP_06486153.1| hypothetical protein XcampvN_16238 [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 230
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 96/205 (46%), Gaps = 15/205 (7%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---EWDVQLRFIGS 81
+ V L+AVSK ++ + + GQ F EN +QEA+ K LR EW IG
Sbjct: 22 RTDVRLLAVSKTKPAEAVAGLAAQGQRAFGENYVQEAEAKIAQLRALGLEW----HLIGH 77
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQSNK FD ++TV R K LL+ L V IQ+N E K G P
Sbjct: 78 LQSNKAELASQCFDWVQTVDRAKLIPLLARHRPDDRAPLNVLIQLNIDDEDSKHGCAPEA 137
Query: 142 TKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI-----ARECKLTKLSMGM 193
+ +L + GLM IP P + F + + R ++ LSMGM
Sbjct: 138 IDSLAEAIALQPRLQLRGLMTIPAPFPEQARRQAAFTRMQALFEQLKTRHRQVDTLSMGM 197
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ DF AIA+GAT VR+G+ +FG R
Sbjct: 198 SADFAEAIAAGATMVRVGTALFGAR 222
>gi|150021415|ref|YP_001306769.1| alanine racemase domain-containing protein [Thermosipho
melanesiensis BI429]
gi|149793936|gb|ABR31384.1| alanine racemase domain protein [Thermosipho melanesiensis BI429]
Length = 228
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 112/213 (52%), Gaps = 9/213 (4%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD 73
I+ A+ R +++ LVAVSK + I+ A G IF EN QE + K L + +D
Sbjct: 16 IKEKALEVGRDYNNIKLVAVSKTFPVEVIKEAYEIGIRIFGENYAQELRDKS-KLLESYD 74
Query: 74 VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ 133
++ +IG +Q NK+ IV + +I +V+R + ++ K ++ + IQVN E
Sbjct: 75 IEWHYIGRIQLNKLKYIVPVSRLIHSVTRIEELKEINKLCRKYNKVQEILIQVNISGEET 134
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-------KPHFYLLSEIARE-CK 185
K+G+ P++ DF+ ++ + G M + P N K LL + + E
Sbjct: 135 KAGLKPDEVGDFLRETVDFERVKIVGFMTMAPFTDNKEIIRNVFKNARVLLEKFSSEFSN 194
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +LSMGM+ D+ +AI GAT +RIGS IFGER
Sbjct: 195 LKELSMGMSNDYLIAIEEGATILRIGSKIFGER 227
>gi|330812364|ref|YP_004356826.1| alanine racemase [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|327380472|gb|AEA71822.1| putative alanine racemase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 228
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 94/199 (47%), Gaps = 10/199 (5%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL--RFIGSLQS 84
SV L+AVSK + +R A + G F EN LQEA K + L D+ L FIG +QS
Sbjct: 28 SVKLLAVSKTKPVQALREAYAAGLRDFGENYLQEALGKQLELT---DLPLIWHFIGPIQS 84
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK I FD + +V R K A LS + L + IQVN E KSG P
Sbjct: 85 NKTRAIAEHFDWVHSVDRLKIAQRLSEQRPADLPPLNICIQVNVSGEASKSGCTPADLSA 144
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR-----ECKLTKLSMGMTRDFEL 199
+L + GLM IP + + + R L LSMGM+ D E
Sbjct: 145 LANAISALPRLKLRGLMAIPEPTEDRAAQDAAFAAVERLQASLALPLDTLSMGMSHDLES 204
Query: 200 AIASGATSVRIGSGIFGER 218
AIA GAT VRIG+ +FG R
Sbjct: 205 AIAQGATWVRIGTALFGAR 223
>gi|15675991|ref|NP_273118.1| hypothetical protein NMB0053 [Neisseria meningitidis MC58]
gi|7225273|gb|AAF40522.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|316985989|gb|EFV64927.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
gi|325199282|gb|ADY94737.1| conserved hypothetical protein TIGR00044 [Neisseria meningitidis
H44/76]
Length = 228
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 98/206 (47%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AV K S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGREPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPPLQVCIEVNIAGEAVKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY----LLSEI-ARECKLTKLSMG 192
+ + + + V GLMC+ A + K F LL+++ A K LSMG
Sbjct: 142 EAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQTMRKLLADLNAAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|320449859|ref|YP_004201955.1| pyridoxal phosphate enzyme, YggS family [Thermus scotoductus SA-01]
gi|320150028|gb|ADW21406.1| pyridoxal phosphate enzyme, YggS family [Thermus scotoductus SA-01]
Length = 211
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 105/208 (50%), Gaps = 10/208 (4%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKWIPLRK 70
+ +E + A R V LVAV+K ++IR L G E+++QEA KK L
Sbjct: 8 EAMEAACRRAGRDPRGVRLVAVTKGRSVEEIREKVLRYGSFPLGESRVQEALKKMELLEA 67
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
EW + IG LQ NK ++ F +I ++ + A L K+ L V ++VN G
Sbjct: 68 EWHL----IGPLQRNK-AKFAPRFALIHSLDSLRLAEALDRVGEKEGVRLKVLVEVNLGR 122
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLT 187
E QK G + + + V R+ L V G M +PP MG +P F LSE+A L
Sbjct: 123 EPQKHGFLEEELPEAVARVREMAHLEVLGFMTVPP-MGPEAVVRPIFRRLSELADRYGLP 181
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ SMGM+ DF +AI GAT VR+G +F
Sbjct: 182 ERSMGMSDDFPIAIEEGATLVRVGRALF 209
>gi|126700237|ref|YP_001089134.1| putative alanine racemase [Clostridium difficile 630]
gi|115251674|emb|CAJ69509.1| putative pyridoxal 5'-phosphate-dependent enzyme [Clostridium
difficile]
Length = 237
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 18/231 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L + KI+ +A R ++L+AV+K VD + A+ G ENK QE
Sbjct: 6 SIKDNLSEIRNKIDKAAKKVDRDSKEITLLAVTKTVDVDLVNEAMREGITSVGENKPQEL 65
Query: 62 KKKW--IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K+ I + W IG+LQ+NKV I+ +I ++ R + + +R
Sbjct: 66 ARKYDIIGDKLNW----HLIGTLQTNKVKYIIDKVCMIHSLDRIALCEEIQKRAEQINRE 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ-LNVEGLMCIPPAMGNP---KPHFY 175
+ +QVN E K G+ + DFV +KY+ + ++GLM + P + + + F
Sbjct: 122 IDCLVQVNISKEESKHGLDREEVVDFVKEVSEKYKNIKIKGLMTMAPFIEDEDEIRGVFK 181
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +++++ K + LSMGM+ D+E+AI GAT VR+G+ IFGER
Sbjct: 182 GLKDLSKQIKELNIPNVGMDVLSMGMSHDYEIAIEEGATIVRVGTSIFGER 232
>gi|325145486|gb|EGC67760.1| hypothetical protein TIGR00044 [Neisseria meningitidis M01-240013]
Length = 228
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 98/206 (47%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AV K S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPPLQVCIEVNIAGEAVKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY----LLSEI-ARECKLTKLSMG 192
+ + + + V GLMC+ A + K F LL+++ A K LSMG
Sbjct: 142 EAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQTMRKLLADLNAAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|161869070|ref|YP_001598236.1| hypothetical protein NMCC_0053 [Neisseria meningitidis 053442]
gi|161594623|gb|ABX72283.1| conserved hypothetical protein [Neisseria meningitidis 053442]
Length = 228
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 97/206 (47%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AV K S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTAVRLSEQRPSSMPPLQVCIEVNIAGEAAKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY----LLSEI-ARECKLTKLSMG 192
+ + + + V GLMC+ A + K F LLS++ K LSMG
Sbjct: 142 EAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQTMRKLLSDLNTAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|298492677|ref|YP_003722854.1| alanine racemase domain-containing protein ['Nostoc azollae' 0708]
gi|298234595|gb|ADI65731.1| alanine racemase domain protein ['Nostoc azollae' 0708]
Length = 222
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 108/204 (52%), Gaps = 13/204 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SV L+AVSK V ++ +R A + G FAE+++QEA K L+ D+ FIG+LQSNK
Sbjct: 19 SVRLIAVSKQVTTELMREAYTAGIRDFAESRIQEAASKQAELQDLPDITWHFIGNLQSNK 78
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP-VYIQVNTGYEIQKSGIMPNQTKDF 145
+ + LFD I +V + A L + Q P V +QV + KSG M ++
Sbjct: 79 AKKALELFDWIHSVDSLQIAQRLD-TLASQLGVTPLVCLQVKILPDPNKSGWMVSELLAD 137
Query: 146 VILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARE--------CKLTKLSMGMT 194
+ Q L ++GLM IPP F ++A+E K+ LSMGM+
Sbjct: 138 LEALNQCKNLQIQGLMTIPPFGLDHDEISSIFNHTQKLAKEIESQQWLHIKMLHLSMGMS 197
Query: 195 RDFELAIASGATSVRIGSGIFGER 218
D++LA+ +GAT VR+G+ +FG R
Sbjct: 198 GDYQLAVRAGATMVRLGTILFGNR 221
>gi|212709355|ref|ZP_03317483.1| hypothetical protein PROVALCAL_00391 [Providencia alcalifaciens DSM
30120]
gi|212688267|gb|EEB47795.1| hypothetical protein PROVALCAL_00391 [Providencia alcalifaciens DSM
30120]
Length = 230
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 103/226 (45%), Gaps = 8/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L ++I +A R ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 1 MTIQKNLSDVTERIRLAATECHRSPQDITLLAVSKTKPCEAIMEAIEAGQRQFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + D+ FIG LQSNK + FD T+ R K A L+ + + L
Sbjct: 61 GVEKIQYFSERNDLVWHFIGPLQSNKSRLVAEHFDWFHTLDRAKIAQRLNEQRPQDKAPL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQ+N E KSGI + + Q L + GLM IP + + ++
Sbjct: 121 NVLIQINISDENSKSGITLEEVNELAAQVAQLPNLVLRGLMTIPAPETDYERQCAAFRQM 180
Query: 181 --------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 EFAFEQLKASYSTVDTLSMGMTDDMRAAIHCGSTLVRIGTAIFGAR 226
>gi|332295641|ref|YP_004437564.1| protein of unknown function UPF0001 [Thermodesulfobium narugense
DSM 14796]
gi|332178744|gb|AEE14433.1| protein of unknown function UPF0001 [Thermodesulfobium narugense
DSM 14796]
Length = 222
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 113/217 (52%), Gaps = 12/217 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+Q K++++ + AKR KD V ++ V+K ++ IR + G +F EN+++EAK+K
Sbjct: 5 VQKVKERVQKAKEAAKR-KDEVFILPVTKTKSTEIIRALIEMGFNVFGENRVREAKEKIK 63
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L +V+ IG LQ+NKV + + +F I++V K + ++ K+ +PV +++
Sbjct: 64 EL---SNVKFEMIGHLQTNKVKDALDIFTRIQSVDSLKLLTEINERAAKKKIVMPVLVEI 120
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI--- 180
N E QK G +P + + + +N+EGLM + + + F L +
Sbjct: 121 NISGESQKYGFLPGEVMNLFRVTSSLRFVNIEGLMGMASLTNDTDKIRKEFSTLRILYER 180
Query: 181 --ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
A L LSMGMT DFE+AI G+ VRIG F
Sbjct: 181 LNAEGYNLNVLSMGMTDDFEVAIMEGSNMVRIGRAFF 217
>gi|254805871|ref|YP_003084092.1| hypothetical protein NMO_1956 [Neisseria meningitidis alpha14]
gi|254669413|emb|CBA08616.1| conserved hypothetical protein [Neisseria meningitidis alpha14]
gi|261391600|emb|CAX49038.1| conserved hypothetical protein [Neisseria meningitidis 8013]
gi|325207100|gb|ADZ02552.1| conserved hypothetical protein TIGR00044 [Neisseria meningitidis
NZ-05/33]
Length = 228
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 98/206 (47%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AV K S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTAVRLSEQRPSSMPPLQVCIEVNIAGEAVKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY----LLSEI-ARECKLTKLSMG 192
+ + + + V GLMC+ A + K F LL+++ A K LSMG
Sbjct: 142 EAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQTMRKLLADLNAAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|256788301|ref|ZP_05526732.1| hypothetical protein SlivT_27764 [Streptomyces lividans TK24]
gi|289772195|ref|ZP_06531573.1| YggS family pyridoxal phosphate enzyme [Streptomyces lividans TK24]
gi|289702394|gb|EFD69823.1| YggS family pyridoxal phosphate enzyme [Streptomyces lividans TK24]
Length = 239
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 114/235 (48%), Gaps = 24/235 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +Q+I ++ A RP+ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAKVEQRITDACAAAGRPRQDVTLIVVTKTYPADDVRILSELGVRHVAENRDQDAA 67
Query: 63 KKW-----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K +PL W F+G LQ+NKV +V DV+++V R + + LS E ++
Sbjct: 68 PKAAACSDLPL--SW----HFVGQLQTNKVRSVVGYADVVQSVDRARLVTALSKEAVRAG 121
Query: 118 R----FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---- 169
R L V + G ++ G+ P ++ L L ++GLM + P G
Sbjct: 122 REVGCLLQVALDAEEGGRGERGGVPPAGIEELADLVAGSEGLRLDGLMTVAPLSGEYSGR 181
Query: 170 PKPHFYLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ F L +++ + T +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 182 QQAAFEHLMDLSTRVRRTHPAANMVSAGMSADLEQAVAAGATHVRVGTAVLGVRP 236
>gi|308388274|gb|ADO30594.1| hypothetical protein NMBB_0057 [Neisseria meningitidis alpha710]
Length = 228
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 98/206 (47%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AV K S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPPLQVCIEVNIAGEAVKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY----LLSEI-ARECKLTKLSMG 192
+ + + + V GLMC+ A + K F LL+++ A K LSMG
Sbjct: 142 EAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQTMRKLLADLNAAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|291296085|ref|YP_003507483.1| alanine racemase domain-containing protein [Meiothermus ruber DSM
1279]
gi|290471044|gb|ADD28463.1| alanine racemase domain protein [Meiothermus ruber DSM 1279]
Length = 214
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 103/208 (49%), Gaps = 9/208 (4%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKWIPLRK 70
++IE + R V LVAV+K +IR L G E+++QEA K L
Sbjct: 8 ERIEKACGRVGRDPKGVRLVAVTKEHTVAEIREQVLRYGHFPLGESRIQEALPKMGELEA 67
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
EW FIG LQ NK V F++I ++ + A ++ + ++Q + V +++N G
Sbjct: 68 EWH----FIGPLQRNKAKFAVR-FELIHSIDSLRLAEAVARKALEQGKVQRVLLELNLGR 122
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLT 187
E QK G + + + + L VEGLM + P P +P F LS +A L
Sbjct: 123 EPQKHGFLEEELPQAIAQIQALEGLRVEGLMTVAPYTDTPETVRPIFAQLSRLADRYGLP 182
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ SMGM+ D E+A+ GAT VR+G IF
Sbjct: 183 ERSMGMSGDLEVAVEEGATLVRVGRAIF 210
>gi|254443117|ref|ZP_05056593.1| conserved hypothetical protein TIGR00044 [Verrucomicrobiae
bacterium DG1235]
gi|198257425|gb|EDY81733.1| conserved hypothetical protein TIGR00044 [Verrucomicrobiae
bacterium DG1235]
Length = 232
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 104/219 (47%), Gaps = 17/219 (7%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA--KKKWIPLR 69
+KI S A R D+V L+ V+K R A G + EN++QEA K + R
Sbjct: 17 EKIHASCEKAGRAVDTVKLLPVTKNHPVDAARYAWDAGLLSVGENRVQEALGKMDDVDSR 76
Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
W+ IG LQSNK ++ F ++TV R K A+ L + R LPV +Q+N G
Sbjct: 77 LCWE----LIGPLQSNKAKKVAERFGRVQTVDRVKIATALDRYAAEAGRRLPVLLQINAG 132
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK---- 185
+ KSG + + L V+GLM I P + + + REC+
Sbjct: 133 RDPAKSGAELEDAAALLEALLKCESLQVDGLMTIAPLSEDADVARRCFARL-RECRDGLS 191
Query: 186 ------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +LSMGM+ D E AI G+T VR+G+ +FG R
Sbjct: 192 KSFGIDLLELSMGMSGDMEEAILEGSTMVRVGTALFGSR 230
>gi|302386413|ref|YP_003822235.1| alanine racemase domain protein [Clostridium saccharolyticum WM1]
gi|302197041|gb|ADL04612.1| alanine racemase domain protein [Clostridium saccharolyticum WM1]
Length = 231
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 112/223 (50%), Gaps = 13/223 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ K ++ + A R + V+L+AVSK S I A S G F ENK+QE +K +
Sbjct: 6 LEEVKSRMSAACKRAGRNPEEVTLIAVSKTKPSAMISEAYSAGVRDFGENKVQELCEKHL 65
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L + D++ IG LQ NKV +++ +I +V + A + E ++S + ++V
Sbjct: 66 ALPE--DIRWHMIGHLQRNKVKQVIDKAVLIHSVDSVRLAVQIEEEAARKSLVADILLEV 123
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---------FY-- 175
N E K G T+ + + ++GLM I P + N + + FY
Sbjct: 124 NVAEEDSKYGFKLEGTESAIREIASLPHVRIKGLMTIAPFVENSEENRPVFKKLRQFYVD 183
Query: 176 LLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ S+ + LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 184 MQSKNIDNVNMNMLSMGMTGDYEVAIEEGATLVRVGTGIFGTR 226
>gi|255656599|ref|ZP_05402008.1| putative alanine racemase [Clostridium difficile QCD-23m63]
Length = 234
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 18/231 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L + KI+ +A R ++L+AV+K VD + A+ G ENK QE
Sbjct: 3 SIKDNLSEIRSKIDKAAKKVDRDSKEITLLAVTKTVDVDLVNEAMREGITSVGENKPQEL 62
Query: 62 KKKW--IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K+ I + W IG+LQ+NKV I+ +I ++ R + + +R
Sbjct: 63 ARKYDIIGNKLNW----HLIGTLQTNKVKYIIDKVCMIHSLDRIALCEEIQKRAEQINRE 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ-LNVEGLMCIPPAMGNP---KPHFY 175
+ +QVN E K G+ + DFV +KY+ + ++GLM + P + + + F
Sbjct: 119 IDCLVQVNISKEESKHGLDREEVVDFVKEVSEKYKNIKIKGLMTMAPFIEDEDEIRGVFK 178
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +++++ K + LSMGM+ D+E+AI GAT VR+G+ IFGER
Sbjct: 179 GLKDLSKQIKELNIPNVGMDVLSMGMSHDYEIAIEEGATIVRVGTSIFGER 229
>gi|254421874|ref|ZP_05035592.1| conserved hypothetical protein TIGR00044 [Synechococcus sp. PCC
7335]
gi|196189363|gb|EDX84327.1| conserved hypothetical protein TIGR00044 [Synechococcus sp. PCC
7335]
Length = 230
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 103/203 (50%), Gaps = 11/203 (5%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SV ++ V+K S +R A G FAENK+QE K L D+ FIG +QSNK
Sbjct: 28 SVRIIGVTKTFSSDIVRQAYDAGFREFAENKVQEGIAKQAKLSDLTDITWHFIGHIQSNK 87
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
++V FD I +V K A+ L+ + + +QV + K+G +
Sbjct: 88 ALKVVENFDWIHSVDSLKLAARLNRQAKSLGKRPSCCLQVKLAPDPAKTGFEIETLLSGL 147
Query: 147 ILCRQKYQLNVEGLMCIPP-AMGNPKPH--FYLLSEIARE--------CKLTKLSMGMTR 195
Q L++ GLM IPP + N + F + +A+E K+ +LSMGM+
Sbjct: 148 ADLDQLSALDIRGLMVIPPYGLTNVQVRAIFEKGAALAQEIAGRSLVNIKMDQLSMGMSG 207
Query: 196 DFELAIASGATSVRIGSGIFGER 218
DFE AIA+GAT +RIG G+FG+R
Sbjct: 208 DFEQAIAAGATMIRIGRGLFGQR 230
>gi|295112147|emb|CBL28897.1| pyridoxal phosphate enzyme, YggS family [Synergistetes bacterium
SGP1]
Length = 231
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 109/231 (47%), Gaps = 18/231 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L ++++ +A LA R V LV V+K ++++ S I ENK+QE
Sbjct: 1 MGLKEHAAAIRERVARTAALAGRKPSDVLLVGVTKTRSVQEMQEVASLVDAI-GENKVQE 59
Query: 61 AKKKWIPLRKEWDVQ----LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
A+ K R+ W R IG LQ+NK V LFD ++++ A L +
Sbjct: 60 AQVK----REAWGDHPTPPWRLIGHLQNNKARRAVELFDAVDSLDSIPLAERLDRIAGEL 115
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPH 173
SR L V I+VNT E K+G+ P + L +EGLM I P + +
Sbjct: 116 SRRLSVLIEVNTAKEASKTGMAPEAFPALLDRVLTLPNLKLEGLMTIGPLTDDEVRVRQA 175
Query: 174 FYLLSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L +A + + L LSMGM+ DFE I G+T VRIG+ +FG R
Sbjct: 176 FAELRGMAEDARGRCGLPLPVLSMGMSGDFEWGILEGSTMVRIGTALFGPR 226
>gi|313501070|gb|ADR62436.1| Alanine racemase domain protein [Pseudomonas putida BIRD-1]
Length = 228
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 102/224 (45%), Gaps = 10/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + L +I +++ R SV L+AVSK + IR + G F EN LQEA
Sbjct: 3 TLADNLSAISARIASASQAVGRDPASVQLLAVSKTKPASAIREIHAAGVHDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K L D+ L FIG +QSNK I FD + +V R K A LS +
Sbjct: 63 LTKQQALS---DLPLIWHFIGPIQSNKTKAIAEHFDWVHSVDRLKIAQRLSEQRPAGLAP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYL 176
L + +QVN E KSG P L + GLM IP + F
Sbjct: 120 LNICLQVNVSGEDSKSGCTPADLPALAKAVAALPNLRLRGLMAIPEPTEDRATQEAAFAS 179
Query: 177 LSEIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L ++ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 180 LRKLQEGLGFGLDTLSMGMSHDLEAAIAQGATWVRIGTALFGAR 223
>gi|304388854|ref|ZP_07370906.1| YggS family pyridoxal phosphate enzyme [Neisseria meningitidis ATCC
13091]
gi|304337188|gb|EFM03370.1| YggS family pyridoxal phosphate enzyme [Neisseria meningitidis ATCC
13091]
Length = 228
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 96/206 (46%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AV K S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGRKPHSVSLIAVGKTFPSDGIREVYASGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + T+ R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTICRLKTAVRLSGQRPSSMPPLQVCIEVNIAGEAVKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE-----CKLTKLSMG 192
+ + + L V GLMC+ A + K F + ++ + K LSMG
Sbjct: 142 EAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQTMQKLLADLNTAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|294053951|ref|YP_003547609.1| alanine racemase domain protein [Coraliomargarita akajimensis DSM
45221]
gi|293613284|gb|ADE53439.1| alanine racemase domain protein [Coraliomargarita akajimensis DSM
45221]
Length = 231
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 107/224 (47%), Gaps = 15/224 (6%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA--KK 63
+L + +Q+I ++ A+R DSV L+ V+K + A G EN++QEA KK
Sbjct: 10 RLGLVQQRIVDACRQAERRVDSVHLLPVTKNHPLDAVLYAARSGLAAVGENRVQEALDKK 69
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
+ W+ IG LQSNK + V FD I++V K L + + +
Sbjct: 70 AKMTTTVRWE----LIGHLQSNKAKDAVEQFDRIQSVDSLKLLQRLDRMAAACGKRMSIL 125
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+Q N G + K G P + V + L ++GLM I P NP K F L +
Sbjct: 126 LQCNAGEDPNKYGFSPAGLEQAVEVALNCSNLQLDGLMTIAPLTDNPDVAKACFERLRTL 185
Query: 181 AREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
C L +LSMGMT D + AIA+G+T +R+G+ ++G R
Sbjct: 186 RDHCADTFSVALPELSMGMTGDLDSAIAAGSTQIRVGTALYGSR 229
>gi|330505390|ref|YP_004382259.1| alanine racemase domain-containing protein [Pseudomonas mendocina
NK-01]
gi|328919676|gb|AEB60507.1| alanine racemase domain-containing protein [Pseudomonas mendocina
NK-01]
Length = 230
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 106/219 (48%), Gaps = 22/219 (10%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I +A ++R + L+AVSK ++ IR A + G F EN LQEA +K L
Sbjct: 14 RIREAAQASQRNLADIGLLAVSKTKPAEAIREAHAAGLRDFGENYLQEALEKQTQLT--- 70
Query: 73 DVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
D+ L FIG +QSNK I FD + +V R K A LS + L + +QVN
Sbjct: 71 DLPLIWHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSDQRPAHLPPLNICLQVNVSG 130
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK-- 188
E KSG P + + L + GLM I P+P + ++ A +L +
Sbjct: 131 EDSKSGCSPEELPELAKAIAALPNLQLRGLMTI------PEPTEDVTAQHAAFARLRQLR 184
Query: 189 ---------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 185 DDLALDLDTLSMGMSHDLEAAIAEGATWVRIGTALFGAR 223
>gi|333030146|ref|ZP_08458207.1| protein of unknown function UPF0001 [Bacteroides coprosuis DSM
18011]
gi|332740743|gb|EGJ71225.1| protein of unknown function UPF0001 [Bacteroides coprosuis DSM
18011]
Length = 223
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 110/213 (51%), Gaps = 15/213 (7%)
Query: 20 LAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFI 79
+ K+ + V LVAVSK IR A + GQ IF E+K QE K L +E D+Q FI
Sbjct: 10 IQKQIPEEVRLVAVSKYHSVDDIREAYNAGQRIFGESKAQELIAKHEELPQE-DIQWHFI 68
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G LQSNK+ I +I +V + ++ E K+ R +P +Q++ E K G
Sbjct: 69 GHLQSNKIKYIAPFISLIHSVDTFRLLKNINKEAKKEGRIIPCLLQLHIADEDTKYGFSF 128
Query: 140 NQTKDFVILCRQKYQLNVE--GLMCIPPAMGNP---KPHFYLL----SEIAREC-----K 185
+ +D + + K NV+ G+M + + K F L SEI +E
Sbjct: 129 TECRDMLKEGKWKELKNVKIAGVMGMATFTEDENLVKSEFKALKDFFSEIQKEFFTTNED 188
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
T++SMGM++D+ +AI G+T +R+GS IFGER
Sbjct: 189 FTEISMGMSQDYPIAIKEGSTLIRVGSKIFGER 221
>gi|296449947|ref|ZP_06891711.1| YggS family pyridoxal phosphate enzyme [Clostridium difficile
NAP08]
gi|296878329|ref|ZP_06902337.1| YggS family pyridoxal phosphate enzyme [Clostridium difficile
NAP07]
gi|296261217|gb|EFH08048.1| YggS family pyridoxal phosphate enzyme [Clostridium difficile
NAP08]
gi|296430627|gb|EFH16466.1| YggS family pyridoxal phosphate enzyme [Clostridium difficile
NAP07]
Length = 237
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 18/231 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L + KI+ +A R ++L+AV+K VD + A+ G ENK QE
Sbjct: 6 SIKDNLSEIRSKIDKAAKKVDRDSKEITLLAVTKTVDVDLVNEAMREGITSVGENKPQEL 65
Query: 62 KKKW--IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K+ I + W IG+LQ+NKV I+ +I ++ R + + +R
Sbjct: 66 ARKYDIIGNKLNW----HLIGTLQTNKVKYIIDKVCMIHSLDRIALCEEIQKRAEQINRE 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ-LNVEGLMCIPPAMGNP---KPHFY 175
+ +QVN E K G+ + DFV +KY+ + ++GLM + P + + + F
Sbjct: 122 IDCLVQVNISKEESKHGLDREEVVDFVKEVSEKYKNIKIKGLMTMAPFIEDEDEIRGVFK 181
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +++++ K + LSMGM+ D+E+AI GAT VR+G+ IFGER
Sbjct: 182 GLKDLSKQIKELNIPNVGMDVLSMGMSHDYEIAIEEGATIVRVGTSIFGER 232
>gi|88856516|ref|ZP_01131173.1| hypothetical protein A20C1_02184 [marine actinobacterium PHSC20C1]
gi|88814170|gb|EAR24035.1| hypothetical protein A20C1_02184 [marine actinobacterium PHSC20C1]
Length = 228
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 100/198 (50%), Gaps = 8/198 (4%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
S++ + ++K + +R G F EN+ QEA+ K L + D + F+G LQS K
Sbjct: 31 SITRIVITKFHPASLVRELYGLGVRDFGENRHQEAQPKAAEL-VDLDARWSFVGQLQSKK 89
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
++ S + +V R+ + LS E L V+IQVN + + G++P++ + F
Sbjct: 90 ARQVRSYCHAVHSVDRDSLITALSSE--DAVVPLDVFIQVNLTDDPARGGVVPSELEAFA 147
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-----ARECKLTKLSMGMTRDFELAI 201
+ + GLM + P +P+P F L + A+ LSMGM+ DF AI
Sbjct: 148 DRVANASGIELRGLMGVAPLEVDPRPAFAALRSLSERIGAQHPHARALSMGMSGDFAQAI 207
Query: 202 ASGATSVRIGSGIFGERP 219
A GAT +RIG+ I G+RP
Sbjct: 208 AEGATHLRIGTAITGKRP 225
>gi|270013195|gb|EFA09643.1| hypothetical protein TcasGA2_TC011768 [Tribolium castaneum]
Length = 248
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 113/210 (53%), Gaps = 21/210 (10%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW---IPLRKEWDVQLRFIGSLQSNK 86
LVAV+K + I A GQ F EN +QE ++K + L K +++ FIG LQ+NK
Sbjct: 35 LVAVTKTKPVELIVQAYEAGQRHFGENYVQELEEKSHHPLILEKCKEIKWHFIGHLQTNK 94
Query: 87 VSEIVSLFDV--IETVSREKTASLLSLEMIKQSRF---LPVYIQVNTGYEIQKSGIMPNQ 141
++++++ ++ +ETV +K A+ L+ K L V +Q+NT E +KSGI PN+
Sbjct: 95 INKVLATPNLYMVETVHSQKLAANLNKSWPKFGPLDSKLNVMVQINTSAEEEKSGIEPNE 154
Query: 142 TKDFV-ILCRQKYQLNVEGLMCIP----PAMGNPKPHFYLLS--------EIARECKLTK 188
D + + L++EGLM I P P F L E+ + K +
Sbjct: 155 VVDLTKFVLNECPNLHLEGLMTIGKFGYDISNGPNPDFLTLRSCRDRVCRELGLDWKTVE 214
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ +E AI G+T+VR+G+ IFGER
Sbjct: 215 LSMGMSDGYEHAIELGSTNVRVGTAIFGER 244
>gi|325131170|gb|EGC53889.1| hypothetical protein TIGR00044 [Neisseria meningitidis OX99.30304]
Length = 228
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 98/206 (47%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AV K S +R + GQ F EN +QE K L D+ IG
Sbjct: 22 AGRKPHSVSLIAVGKTFPSDGVREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTAVRLSEQRPSSMPPLQVCIEVNIAGEAVKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY----LLSEI-ARECKLTKLSMG 192
+ + + + V GLMC+ A + K F LL+++ A K LSMG
Sbjct: 142 EAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQTMRKLLADLNAAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|320108336|ref|YP_004183926.1| alanine racemase domain-containing protein [Terriglobus saanensis
SP1PR4]
gi|319926857|gb|ADV83932.1| alanine racemase domain protein [Terriglobus saanensis SP1PR4]
Length = 235
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 113/235 (48%), Gaps = 18/235 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L + +I + A R V L+AVSK + + A GQ +F ENK+QE
Sbjct: 1 MSIAENLSEIRAEIAAACEKAGRDASEVKLMAVSKTHPPQMLAEAYRAGQTLFGENKVQE 60
Query: 61 AKKKWIPLR-----KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
+ K L + V++ IG+LQSNK ++ F I+ V K A+ L+ +
Sbjct: 61 WEHKRDQLHSLIGEEVAKVEMHLIGNLQSNKANKAAWAFSGIDAVDSVKVAAKLNSVSAQ 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ-LNVEGLMCIPP---AMGNPK 171
LPV I+V E K G +P V+ ++ + V G M +P + +
Sbjct: 121 SGLVLPVLIEVKLSEEETKHG-LPEYALSGVLREILEFDGIEVRGFMTVPAFTEDVEGAR 179
Query: 172 PHFYLL--------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P+F L SE + L +LSMGM+ DF +AI G+T VRIG+GIFG R
Sbjct: 180 PYFKKLREIRDAMRSEFHGDLALPELSMGMSHDFAVAIEEGSTCVRIGTGIFGSR 234
>gi|160902802|ref|YP_001568383.1| alanine racemase domain-containing protein [Petrotoga mobilis SJ95]
gi|160360446|gb|ABX32060.1| alanine racemase domain protein [Petrotoga mobilis SJ95]
Length = 231
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 108/204 (52%), Gaps = 9/204 (4%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R +S+ LVAVSK S I+ G F ENK QE ++K+ L K D+ FIG +
Sbjct: 25 RDLNSIKLVAVSKNFPSDNIKTLYEEGHKDFGENKAQELREKYEDL-KNLDIVWHFIGRI 83
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q+NK+ IV + + I +V R K + + + ++ V +++N E K+G++P++
Sbjct: 84 QTNKIKYIVPIAEYIHSVWRMKEIEEIQKKAEEINKTQKVLLEINISGEQSKAGLIPSEV 143
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI-----ARECKLTKLSMGMT 194
+ F+ + + GLM + P N + F L E+ + + +LSMGMT
Sbjct: 144 EAFLQDATSFKNIKIIGLMTMAPYTDNVEVIRNVFRSLRELRGNLNKKYPSIKELSMGMT 203
Query: 195 RDFELAIASGATSVRIGSGIFGER 218
D+++AI GAT +RIG+ IFG R
Sbjct: 204 NDYKIAIEEGATLLRIGTRIFGNR 227
>gi|114051511|ref|NP_001040304.1| proline synthetase co-transcribed bacterial-like protein [Bombyx
mori]
gi|87248205|gb|ABD36155.1| proline synthetase co-transcribed bacterial-like protein [Bombyx
mori]
Length = 262
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 118/226 (52%), Gaps = 27/226 (11%)
Query: 20 LAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW---IPLRKEW 72
+A+R KD + LVAVSK+ + I A + GQ F EN + E K + L K
Sbjct: 34 VARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKASDPLILEKCK 93
Query: 73 DVQLRFIGSLQSNKVSEIVS---LFDVIETVSREKTASLLS---LEMIKQSRFLPVYIQV 126
D++ FIG LQ+NK+++++ LF ++ETV EK A L+ L+ K+ L V +QV
Sbjct: 94 DIKWHFIGHLQTNKINKLLGSPGLF-MVETVDSEKLADNLNKQWLKYRKEKERLRVMVQV 152
Query: 127 NTGYEIQKSGIMPNQTKDFV-ILCRQKYQLNVEGLMCIP----PAMGNPKPHFYLLSEIA 181
NT E KSG+ P +T V + L+ +GLM I P P + L +
Sbjct: 153 NTSGEQAKSGLEPLETTKAVEHILENCPNLDFQGLMTIGQYDYDITKGPNPDYLCLIKCR 212
Query: 182 REC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+E K +LSMGM+ DF AI GAT+VR+GS IFG RP
Sbjct: 213 QEVCEKLNLDIKDVELSMGMSSDFAHAIELGATTVRVGSTIFGARP 258
>gi|330823083|ref|YP_004386386.1| hypothetical protein Alide2_0451 [Alicycliphilus denitrificans
K601]
gi|329308455|gb|AEB82870.1| protein of unknown function UPF0001 [Alicycliphilus denitrificans
K601]
Length = 240
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 110/236 (46%), Gaps = 23/236 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ ++I + A RP SV+L+AVSK ++ + A GQ F EN +QEA
Sbjct: 3 TIDRNLQRVHERIAQACAAAGRPPGSVALLAVSKTFGAEAVHAAALAGQRAFGENYIQEA 62
Query: 62 KKKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K LR Q IG +QSNK + FD +TV R K A LS +
Sbjct: 63 VEKMAALRALAPALALQWHCIGPIQSNKTRLVAEHFDWAQTVDRLKIAQRLSEQRPAHLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V IQVN KSG+ P+ + +L + G+M IP + P F
Sbjct: 123 PLMVCIQVNVDGGATKSGVGPHDAAVLAEAVARLPRLVLRGVMSIP----DDAPTFEAQR 178
Query: 176 LLSEIAREC-------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E A + LSMGMT D E A+A+G+T VR+GSG+FG R
Sbjct: 179 ALHERAAAVFHHIKAQGFEGLGQFDTLSMGMTGDLEAAVAAGSTMVRVGSGVFGAR 234
>gi|238897705|ref|YP_002923384.1| putative alanine racemase [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229465462|gb|ACQ67236.1| putative alanine racemase [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 239
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 106/227 (46%), Gaps = 20/227 (8%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE------ 60
+Q K++I + A R + L+AVSK K I A+ GQ F EN +QE
Sbjct: 8 IQNVKERILSDAQNCGRSPKEIQLLAVSKTRSVKLITEAIQAGQYAFGENYVQEGIEKIH 67
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K + ++ +W FIG LQSNK + FD TV R K A LS +
Sbjct: 68 YFSKNRMGNIKPQW----HFIGPLQSNKTRSVAEYFDWCHTVDRFKLAERLSAQRPSNLP 123
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVN E KSG+M ++ D L +L + GLM IP + + +
Sbjct: 124 DLNVLIQVNISKEKTKSGVMLSELFDLASLISPLPKLKLCGLMAIPALIKDYHQQLVVFE 183
Query: 179 EIARE-CKLTK-------LSMGMTRDFELAIASGATSVRIGSGIFGE 217
E+ +L K LS+GMT D AI +G+T VRIG GIF
Sbjct: 184 EMHSAFLELKKEYPEWDILSLGMTNDMTAAIHAGSTLVRIGEGIFSH 230
>gi|227325976|ref|ZP_03830000.1| putative alanine racemase [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 237
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 109/228 (47%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ +Q+I +A R + ++L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDIRQQIATAAAHCARAPEEITLLAVSKTKPVSAIEEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K ++ + ++ FIG LQSNK + FD TV R + A LS +
Sbjct: 63 VEKIHYFQENHPDTPLEWHFIGPLQSNKSRLVAENFDWFHTVDRLRIAQRLSEQRPATLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V +Q+N E KSGIM ++ + L + GLM IP + + +
Sbjct: 123 PLNVLLQINISGEPSKSGIMVDELAELAASVAALPNLRLRGLMAIPAPETDYEQQLAVFK 182
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ A + LSMGMT D AI +G+T VRIG+ IFG R
Sbjct: 183 QMAVLFQTLSANHPHIDTLSMGMTDDMRAAITAGSTLVRIGTAIFGAR 230
>gi|320094183|ref|ZP_08025992.1| FkuA protein [Actinomyces sp. oral taxon 178 str. F0338]
gi|319978880|gb|EFW10414.1| FkuA protein [Actinomyces sp. oral taxon 178 str. F0338]
Length = 245
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 113/235 (48%), Gaps = 22/235 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC-----GQVIFAE 55
M++ + ++ I+ +A A R D V+L +K + A +C G V+
Sbjct: 1 MTIYEAISAARRAIDEAARAAGR-TDRVALELAAKTRTPGECYEAAACLARLGGPVLVGH 59
Query: 56 NKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
N++QEA+ +R+ ++ IG LQSNK+++ ++ D +ETVS + A + +
Sbjct: 60 NRVQEARATAEAVRRVDGARIHLIGPLQSNKINQALACVDAVETVSSAELARRID---AR 116
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--- 172
+R LPV++QVN E KSG P+ V + L + G M + + P
Sbjct: 117 ATRPLPVFVQVNVSGEATKSGCAPDAVAPVVDAVSECANLRLAGFMTVGLNSTDEAPVRR 176
Query: 173 HFYLLSEIARECKLTK---------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L I R+ + LSMGM+RD AIA GAT VR+G+ +FG R
Sbjct: 177 AYARLRSI-RDAAAARTGIGAASLELSMGMSRDMAWAIAEGATIVRLGTAVFGAR 230
>gi|86146413|ref|ZP_01064737.1| Predicted enzyme with a TIM-barrel fold [Vibrio sp. MED222]
gi|85835892|gb|EAQ54026.1| Predicted enzyme with a TIM-barrel fold [Vibrio sp. MED222]
Length = 238
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 97/207 (46%), Gaps = 11/207 (5%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK---KKWIPLRKEWDVQLRFI 79
R DSV L+AVSK I A GQV F EN +QE K + +++ FI
Sbjct: 24 RAPDSVQLLAVSKTKPIDAILEAALGGQVAFGENYVQEGVDKVKHFSEQHSNLNLEWHFI 83
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G +QSNK I F + +V R+K A L + + L V IQVNT E KSG
Sbjct: 84 GPIQSNKTRPIAESFQWVHSVDRDKIAQRLHDQRPNELPPLQVLIQVNTSGEDSKSGTSE 143
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSM 191
L L + GLM IP + + + S++ A+ + LSM
Sbjct: 144 ETVFALAELISSLPNLTLRGLMSIPANVSDYQSQLKAFSQLADLQQKLAAKYPDIDTLSM 203
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D + A+ +G+T VRIG+ IFG R
Sbjct: 204 GMSGDMDAAVEAGSTMVRIGTAIFGAR 230
>gi|325205158|gb|ADZ00611.1| conserved hypothetical protein TIGR00044 [Neisseria meningitidis
M04-240196]
Length = 234
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 96/204 (47%), Gaps = 8/204 (3%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R SVSL+AV K S IR + GQ F EN +QE K L D+ IG +
Sbjct: 24 RDPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIGDV 83
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
QSNK + + T+ R KTA LS + L V I+VN E K G+ P +
Sbjct: 84 QSNKTKFVAERAHWVHTICRLKTAVRLSGQRPSSMPPLQVCIEVNIAGEAAKHGVAPEEA 143
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE-----CKLTKLSMGMT 194
+ + + V GLMC+ A + K F + ++ + K LSMGM+
Sbjct: 144 VVLAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQTMRKLLADLNTAGVKADVLSMGMS 203
Query: 195 RDFELAIASGATSVRIGSGIFGER 218
D AIA GAT VRIGS IFG+R
Sbjct: 204 DDMPAAIACGATHVRIGSAIFGKR 227
>gi|159902932|ref|YP_001550276.1| TIM-barrel fold family protein [Prochlorococcus marinus str. MIT
9211]
gi|159888108|gb|ABX08322.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
str. MIT 9211]
Length = 213
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 104/195 (53%), Gaps = 3/195 (1%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+ L+AVSK + +IR GQ+ F E++LQEA K+ L +++ FIG LQ+NK
Sbjct: 17 GIHLLAVSKGQPASEIRSLFIEGQIDFGESRLQEALTKFDVLNDLQEIRWHFIGRLQANK 76
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V +V FDVI +V K A +S ++++ + QV + +K+G ++ +
Sbjct: 77 VRGVVKSFDVIHSVDSIKLAKRISRIAGEENKMPLIMFQVKFRKDDKKTGFEVDELLEAW 136
Query: 147 ILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIAS 203
+ + GLM IPPA K F +A + L SMGM+RD+E AI +
Sbjct: 137 TKLITLPNVRICGLMTIPPAGLDRHGTKNLFKECRNLADQLSLQDCSMGMSRDWEDAIEA 196
Query: 204 GATSVRIGSGIFGER 218
GAT +R+GS +FGER
Sbjct: 197 GATWIRLGSILFGER 211
>gi|218710629|ref|YP_002418250.1| hypothetical protein VS_2683 [Vibrio splendidus LGP32]
gi|218323648|emb|CAV19942.1| Hypothetical protein VS_2683 [Vibrio splendidus LGP32]
Length = 238
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 97/207 (46%), Gaps = 11/207 (5%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK---KKWIPLRKEWDVQLRFI 79
R DSV L+AVSK I A GQV F EN +QE K + +++ FI
Sbjct: 24 RAPDSVQLLAVSKTKPIDAILEAALGGQVAFGENYVQEGVDKVKHFSEQHSNLNLEWHFI 83
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G +QSNK I F + +V R+K A L + + L V IQVNT E KSG
Sbjct: 84 GPIQSNKTRPIAESFQWVHSVDRDKIAQRLHDQRPNELPPLQVLIQVNTSGEDSKSGTSE 143
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSM 191
L L + GLM IP + + + S++ A+ + LSM
Sbjct: 144 ETVFALAELISSLPNLTLRGLMSIPANVSDYQSQLKAFSQLAELQQKLAAKYPDIDTLSM 203
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D + A+ +G+T VRIG+ IFG R
Sbjct: 204 GMSGDMDAAVEAGSTMVRIGTAIFGAR 230
>gi|169824333|ref|YP_001691944.1| putative proline synthetase associated protein [Finegoldia magna
ATCC 29328]
gi|167831138|dbj|BAG08054.1| putative proline synthetase associated protein [Finegoldia magna
ATCC 29328]
Length = 226
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 118/236 (50%), Gaps = 31/236 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L + ++ A + PK L+AV+K VD +I+ A+ CG ENK QE
Sbjct: 1 MSIKDNLNEVNENLKKFASHGETPK----LIAVTKTVDIDRIKEAIDCGVTDIGENKPQE 56
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR-------EKTASLLSLEM 113
K+ L+ V IG LQSNKV ++V +I ++ R EK AS ++
Sbjct: 57 MSWKYDELKDS--VNYHMIGHLQSNKVKDVVGKACLIHSLDRMSVLKEIEKRASAIN--- 111
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP- 172
+ IQ+N E QKSG+ + F+ ++ + V+GLM I P +P+
Sbjct: 112 ----KPQDCLIQLNVAEEEQKSGLYLDDLDSFIEEIEKRKFVKVKGLMSIAPFAEDPEEI 167
Query: 173 --HFYLLSEIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
F + EI + K T+ LSMGM+ D+++A+ G+ VR+GS IFG+R
Sbjct: 168 RWVFKKMREIYDKIKNTEYKNIEMKYLSMGMSHDYKVALEEGSNMVRVGSFIFGKR 223
>gi|307110697|gb|EFN58933.1| hypothetical protein CHLNCDRAFT_48564 [Chlorella variabilis]
Length = 223
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 107/207 (51%), Gaps = 24/207 (11%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS- 88
LVAVSK ++ +R A G +F EN +QE K PL + D FIG LQSNKV
Sbjct: 17 LVAVSKTKPAEAVREAYEAGHRVFGENYVQELADK-APLLPQ-DCAWHFIGHLQSNKVKA 74
Query: 89 --EIVSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQVNTGYEIQKSGIMPNQTKDF 145
E V ++ETV K AS L + R L V++QVNT E K G+ P +D
Sbjct: 75 LLEAVPNLALLETVDSAKLASKLDSTVASLGRPPLAVFVQVNTSGEESKYGVEP---QDC 131
Query: 146 VILCRQKYQ----LNVEGLMCI--PPAMGNPKPHFYLLSEIARE-CKLT-------KLSM 191
+ L R ++ L + GLM I P P+ +F L++ R C +LSM
Sbjct: 132 LALARHIHEQCPHLRLAGLMTIGMPDYTSRPE-NFRCLADCRRAVCAALGLQEGDLELSM 190
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DFE AI G+T+VR+GS IFG R
Sbjct: 191 GMSGDFEAAIEMGSTNVRVGSTIFGAR 217
>gi|222099903|ref|YP_002534471.1| Alanine racemase domain protein [Thermotoga neapolitana DSM 4359]
gi|221572293|gb|ACM23105.1| Alanine racemase domain protein [Thermotoga neapolitana DSM 4359]
Length = 229
Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 114/226 (50%), Gaps = 12/226 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L L+ ++IEN+A+ + R V LV SK + +++ G F EN+ Q+
Sbjct: 1 MGLKENLEKVMERIENAALRSGRDPSEVKLVVASKYANVQEMEELFLLGIREFGENRAQD 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK + + + FIG +Q+NKV IV ++I +V R + + K ++
Sbjct: 61 LIKKSEYFKGK-PIIWHFIGRIQTNKVKYIVPRCELIHSVWRVEELEEIEKRATKINKIQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ I+VN E K+G+ ++F+ +C++ + V G M + P + +P+ + E+
Sbjct: 120 KILIEVNVFGEESKAGLSVESVEEFLKICQRFDHVEVLGFMTMAPYVEDPEEVRWGFREL 179
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ KL +LSMGM+ DFE+AI GAT VRIGS IF
Sbjct: 180 RKLRDELSQRFSGNIKLKELSMGMSNDFEVAIEEGATMVRIGSAIF 225
>gi|260587699|ref|ZP_05853612.1| pyridoxal phosphate enzyme, YggS family [Blautia hansenii DSM
20583]
gi|260541964|gb|EEX22533.1| pyridoxal phosphate enzyme, YggS family [Blautia hansenii DSM
20583]
Length = 231
Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 112/231 (48%), Gaps = 17/231 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++++E + A R ++ V+L+AVSK I L F ENK+QE
Sbjct: 1 MSVCENYKEVEKRVEEACKRAGRKREEVTLIAVSKTKPVSMIEELLPLNVRDFGENKVQE 60
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
AK + +P W IG LQ NKV IV +I +V + A +S K+
Sbjct: 61 LTAKAEILPSALHW----HMIGHLQRNKVKYIVDKACIIHSVDSLRLAEEISKAAQKKQV 116
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+ I+VN E K G+ ++ + + ++GLM I P + NP+ + ++
Sbjct: 117 TAKILIEVNVAEEESKFGVRTSELLPLIEAISLLPNIAIKGLMTIAPYVENPEENRWIFQ 176
Query: 179 EIAR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + LSMGMT D+E+AI GAT VR+G+GIFGER
Sbjct: 177 KLKNLSIDIKGKNFDNVTMDVLSMGMTGDYEVAIEEGATHVRVGTGIFGER 227
>gi|119717282|ref|YP_924247.1| alanine racemase domain-containing protein [Nocardioides sp. JS614]
gi|119537943|gb|ABL82560.1| alanine racemase domain protein [Nocardioides sp. JS614]
Length = 234
Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 105/227 (46%), Gaps = 14/227 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ + +I + A R V LV V+K + +R+ G EN+ QEA+
Sbjct: 9 LAANLETVRDRIAAACADAGRDPADVRLVVVTKFFPASDVRLLAELGVTDVGENRHQEAE 68
Query: 63 KKWIPLRKEWDVQLR--FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K D+ LR FIG LQSNK + + DV+E+V R K L ++ +
Sbjct: 69 SKAAEC---ADLGLRWHFIGGLQSNKAAAVAEYADVVESVDRLKLVGPLGRGAQRRDVPV 125
Query: 121 PVYIQVN---TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
V +QV+ G E +SG P Q L + GLM + P +P F L
Sbjct: 126 EVLLQVSLDPPGAE-GRSGADPADLPALAGAVEQAAGLRLRGLMAVAPLGEDPAAAFARL 184
Query: 178 SEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+++ R+ L T LS GM+ D E A+ GAT VRIGS + G RP
Sbjct: 185 ADLRRDFLLERPDATWLSAGMSADLEDAVRVGATHVRIGSAVLGSRP 231
>gi|91090970|ref|XP_974705.1| PREDICTED: similar to proline synthetase co-transcribed
bacterial-like protein [Tribolium castaneum]
Length = 292
Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 113/210 (53%), Gaps = 21/210 (10%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW---IPLRKEWDVQLRFIGSLQSNK 86
LVAV+K + I A GQ F EN +QE ++K + L K +++ FIG LQ+NK
Sbjct: 79 LVAVTKTKPVELIVQAYEAGQRHFGENYVQELEEKSHHPLILEKCKEIKWHFIGHLQTNK 138
Query: 87 VSEIVSLFDV--IETVSREKTASLLSLEMIKQSRF---LPVYIQVNTGYEIQKSGIMPNQ 141
++++++ ++ +ETV +K A+ L+ K L V +Q+NT E +KSGI PN+
Sbjct: 139 INKVLATPNLYMVETVHSQKLAANLNKSWPKFGPLDSKLNVMVQINTSAEEEKSGIEPNE 198
Query: 142 TKDFV-ILCRQKYQLNVEGLMCIP----PAMGNPKPHFYLLS--------EIARECKLTK 188
D + + L++EGLM I P P F L E+ + K +
Sbjct: 199 VVDLTKFVLNECPNLHLEGLMTIGKFGYDISNGPNPDFLTLRSCRDRVCRELGLDWKTVE 258
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ +E AI G+T+VR+G+ IFGER
Sbjct: 259 LSMGMSDGYEHAIELGSTNVRVGTAIFGER 288
>gi|302847524|ref|XP_002955296.1| hypothetical protein VOLCADRAFT_65697 [Volvox carteri f.
nagariensis]
gi|300259368|gb|EFJ43596.1| hypothetical protein VOLCADRAFT_65697 [Volvox carteri f.
nagariensis]
Length = 250
Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 111/210 (52%), Gaps = 23/210 (10%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SV LVAVSK + ++ A GQ +F EN +QE K L DVQ FIG LQSNK
Sbjct: 29 SVRLVAVSKTKPVEALQEAYDAGQRVFGENYVQEMLDKAPALPS--DVQWHFIGHLQSNK 86
Query: 87 VSEIVSL---FDVIETVSREKTASLL--SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
V +V ++ETV K A L ++E+ +++ L V +QVNT E K G+ P +
Sbjct: 87 VKAVVENVPNLAMVETVDSTKLADKLNRAVEVAGRTQPLAVMVQVNTSGEESKFGVEPGE 146
Query: 142 ----TKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE----IARECKLT----K 188
K V C + L + GLM I P + +F L++ +A E + +
Sbjct: 147 CVALAKHIVQSCPK---LRLAGLMTIGMPDYSSRPENFECLADCRMKVAAELGMVPEHLE 203
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ DFE AI G+T++R+GS IFG R
Sbjct: 204 LSMGMSGDFEQAIEMGSTNIRVGSTIFGAR 233
>gi|260599280|ref|YP_003211851.1| hypothetical protein CTU_34880 [Cronobacter turicensis z3032]
gi|260218457|emb|CBA33591.1| UPF0001 protein yggS [Cronobacter turicensis z3032]
Length = 247
Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 110/224 (49%), Gaps = 11/224 (4%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N QV +QKI +A R + V+L+AVSK + I A++ GQ F EN +QE +K
Sbjct: 17 NLTQV-RQKISAAAQRCGRAPEEVTLLAVSKTKPASAIAEAIAAGQREFGENYVQEGVEK 75
Query: 65 WIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ R + FIG LQSNK + FD TV R + A+ L+ + + L V
Sbjct: 76 ILHFRDAGVEGLTWHFIGPLQSNKSRLVAEHFDWCHTVDRLRIATRLNEQRPDEMTPLNV 135
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
IQVN E KSGI ++ +L + GLM IP F + E+A
Sbjct: 136 LIQVNISDEQSKSGIALSELDTLAEQIAALPRLRLRGLMAIPAPEKEYARQFAVAREMAA 195
Query: 182 -------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 196 AFTALKARYPTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 239
>gi|302391655|ref|YP_003827475.1| alanine racemase domain protein [Acetohalobium arabaticum DSM 5501]
gi|302203732|gb|ADL12410.1| alanine racemase domain protein [Acetohalobium arabaticum DSM 5501]
Length = 232
Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 110/209 (52%), Gaps = 15/209 (7%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R D + LVAV+K ++I+ + V E+++QE + K+ + ++ + IG L
Sbjct: 24 RDSDEIKLVAVTKTRGIEEIKEVIEADVVDLGESRVQELRDKYDNISQK--INWHMIGHL 81
Query: 83 QSNKVSEIVSLF--DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
Q NKV I+ + ++I ++ + A ++ R + V +Q+N + K G+ P
Sbjct: 82 QRNKVKYIMRMERCNLIHSMDSMRLAKKINKRAGMADRVMNVLVQINVAGDENKFGLEPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK--------LTKL 189
+T D++ + L V+GLM + P + + +P+F L E+ E K + +L
Sbjct: 142 ETIDYLRKVAEFENLQVKGLMTMVPYVDDTEQVRPYFRELKELFEEVKRAEIPNIEMQEL 201
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMG+T DFE+AI GAT VR+GS IFG R
Sbjct: 202 SMGITNDFEVAIEEGATIVRVGSAIFGPR 230
>gi|328767687|gb|EGF77736.1| hypothetical protein BATDEDRAFT_91499 [Batrachochytrium
dendrobatidis JAM81]
Length = 241
Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 108/206 (52%), Gaps = 21/206 (10%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
+ LVAVSK + I A G F EN +QE +K L D+ FIGS+QSNK
Sbjct: 38 IRLVAVSKTKPASDIAAAYELGHRHFGEN-VQELVEKASILPS--DIHWHFIGSIQSNKC 94
Query: 88 SEIVSLFDV--IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ---- 141
+ + ++ IET+ K A ++ K + L V++Q+NT E KSGI+P+
Sbjct: 95 KALADVPNLWTIETIDSSKKALTMNKACQKLASPLRVFLQINTSGEATKSGILPSNCVMT 154
Query: 142 TKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECKLT------KLSMG 192
K+ + C + L + GLMCI A + P F LL E ++ + +LSMG
Sbjct: 155 AKEILDECDK---LELIGLMCIGAPHNAKNDRNPDFDLLVECKQQIEAAFGMSGLELSMG 211
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ DFE AI G+T++R+GS IFG R
Sbjct: 212 MSDDFESAIEYGSTNIRVGSSIFGSR 237
>gi|331091121|ref|ZP_08339963.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405343|gb|EGG84879.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
2_1_46FAA]
Length = 224
Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 109/216 (50%), Gaps = 16/216 (7%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD 73
IEN + K K+ V+L+AVSK ++ I+ G F ENK+QE K+ L K D
Sbjct: 10 IEN---IHKSCKNEVTLIAVSKTKPAEMIQELYDAGCRNFGENKVQELIDKYEILPK--D 64
Query: 74 VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ 133
+ IG LQ NKV IV +I +V + A + E K++ + + I++N E
Sbjct: 65 ICWHMIGHLQRNKVKYIVDKVSLIHSVDSLRLAQTIEKEAEKKNCVVDILIEINMAREES 124
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR----------- 182
K GI P + + + + V+GLM + P + NP+ + + +E+ +
Sbjct: 125 KYGIYPEELEALLREISHLSHIRVKGLMTVAPNVKNPEENRKIFTEMKKLSVDIAKKNID 184
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGM+ D+ +A+ GA VR+G+ IFG R
Sbjct: 185 NIIMSILSMGMSNDYNIAVEEGANMVRVGTSIFGAR 220
>gi|319764079|ref|YP_004128016.1| alanine racemase domain protein [Alicycliphilus denitrificans BC]
gi|317118640|gb|ADV01129.1| alanine racemase domain protein [Alicycliphilus denitrificans BC]
Length = 264
Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 108/239 (45%), Gaps = 39/239 (16%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L + +I + A R SV L+ VSK ++R+A + G + ENK QEA K
Sbjct: 23 RHLATVQARIAAACQRAGRDPASVRLLPVSKTQPEARVRLAHAAGCRLLGENKPQEAYGK 82
Query: 65 WIPLRKEWDVQLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
W+ + ++ IG LQ+NK V+ S F ++++ + A L + + R L
Sbjct: 83 WLATQDLPGLRWSVIGHLQTNKAKLVARFASEFQALDSL---RVAEALERRLQAEGRALD 139
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V++QVNT E K G++P + F+ L V GLM + L S A
Sbjct: 140 VFVQVNTSGEASKYGLLPREVAAFLRALPAFPALRVRGLMTL-----------ALFSSDA 188
Query: 182 ---REC-------------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R C L +LSMGM+ DFE+AI GAT VR+G +FG R
Sbjct: 189 ARVRRCFVLLRTLRDRLRQEAPAGITLEELSMGMSGDFEIAIEEGATVVRVGQALFGAR 247
>gi|146312996|ref|YP_001178070.1| alanine racemase domain-containing protein [Enterobacter sp. 638]
gi|145319872|gb|ABP62019.1| alanine racemase domain protein [Enterobacter sp. 638]
Length = 233
Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 109/227 (48%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L ++KI +A R + VSL+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAQVREKISAAATRCGRASEDVSLLAVSKTKPASAIAEAIAAGQREFGENYVQEG 62
Query: 62 KKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ +Q FIG LQSNK + FD TV R + A+ L+ +
Sbjct: 63 VDKIRHFQETGMMGLQWHFIGPLQSNKSRLVAEHFDWCHTVDRLRIATRLNEQRPADKAP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + L + GLM IP + F + +
Sbjct: 123 LNVLIQINISDENSKSGIALAELDALAAQVAELPGLRLRGLMAIPAPKTEYERQFAVAQQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFEALKARYVTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|110802818|ref|YP_699137.1| hypothetical protein CPR_1822 [Clostridium perfringens SM101]
gi|110683319|gb|ABG86689.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens
SM101]
Length = 219
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 105/214 (49%), Gaps = 12/214 (5%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
EN K+ +V L+AVSK +++ A G F ENK+QE +K+ K DV
Sbjct: 5 ENLTKFTKKIPSNVQLIAVSKTRTIEEMEEAYEFGIRKFGENKVQEIIRKFDEFHK--DV 62
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
+ IG LQ+NKV IV +I+++ K + + ++ IQVN G E QK
Sbjct: 63 EWHLIGHLQTNKVKYIVDKVHLIQSLDSIKLLKEIEKVYGRHNKIANTLIQVNIGREEQK 122
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY------LLSEIA----REC 184
GI+ + + + +NV G+M I P + Y L E+ +
Sbjct: 123 YGILEEKLDELIEAIEACNNVNVLGIMTIIPKGTEEECRKYFSKTHKLFCELKEKKFKNI 182
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K+ LSMGM+ D+E+AI G+ VRIG GIFG+R
Sbjct: 183 KMDILSMGMSGDYEIAIEEGSNMVRIGQGIFGKR 216
>gi|322834238|ref|YP_004214265.1| alanine racemase domain protein [Rahnella sp. Y9602]
gi|321169439|gb|ADW75138.1| alanine racemase domain protein [Rahnella sp. Y9602]
Length = 239
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 107/225 (47%), Gaps = 15/225 (6%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
LQ ++KI +A R + ++L+AVSK + + A++ GQ+ F EN +QE K
Sbjct: 12 NLQNVREKIAAAAQHCGRSPEEITLLAVSKTKPASAVEEAIAAGQLAFGENYVQEGVDKI 71
Query: 66 IPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ + FIG LQSNK + FD T+ R K A L+ + L V I
Sbjct: 72 AHFAGHQPALTWHFIGPLQSNKSRLVAENFDWCHTIDRLKIAQRLNEQRPAGLAPLQVLI 131
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKY---QLNVEGLMCIPPAMGNPKPHFYL----- 176
QVN E KSGI D L RQ +L + GLM IP + +
Sbjct: 132 QVNISDEASKSGIA---VGDIAELARQIMAMPRLILRGLMAIPAVETDHARQLEVFGKMR 188
Query: 177 --LSEIAREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L ++ C + LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 189 DALKDLQNICPQADTLSMGMTDDMPAAIAAGSTMVRIGTAIFGAR 233
>gi|154494905|ref|ZP_02033910.1| hypothetical protein PARMER_03949 [Parabacteroides merdae ATCC
43184]
gi|154085455|gb|EDN84500.1| hypothetical protein PARMER_03949 [Parabacteroides merdae ATCC
43184]
Length = 222
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 107/207 (51%), Gaps = 20/207 (9%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSN 85
V+LVAVSK + ++ A + GQ +F E++ QE AK+K +P EW FIG LQSN
Sbjct: 18 VTLVAVSKFHPVEALQEAYNAGQRVFGESRAQELTAKQKVLPSDIEW----HFIGPLQSN 73
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV +I I ++ K ++ + K R + V ++++ E K G P++ ++
Sbjct: 74 KVKDIAPFIHTIHSIDSLKLLQEVNKQAAKHDRIIRVLLEIHIAQEEAKHGFSPDECREL 133
Query: 146 V--ILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK---------LTKLSM 191
+ +L + + GLM + + K F+ + E+ E K +LSM
Sbjct: 134 LYNLLPEALPYIRICGLMGMATNTDDTSLIKNEFHNIHELFTELKNSVFKGDEYFCELSM 193
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D+ +AI G+T +RIG+ IFGER
Sbjct: 194 GMSHDYPIAIREGSTMIRIGTSIFGER 220
>gi|315654634|ref|ZP_07907540.1| K+ uptake protein [Mobiluncus curtisii ATCC 51333]
gi|315491098|gb|EFU80717.1| K+ uptake protein [Mobiluncus curtisii ATCC 51333]
Length = 247
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 119/233 (51%), Gaps = 20/233 (8%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L Q++ +A A R +S+ ++ VSK +R AL+ G F ENK QE K
Sbjct: 7 RLHDLSQRVAAAAATAGRDSESIRILPVSKTHPVTDLREALAAGVSEFGENKPQELATKA 66
Query: 66 ------IPLRKEWDVQLRFI--GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+ L + R+I G+LQ NK IV+ ++++ K A L+ + +
Sbjct: 67 AELGANLGLCADGSASPRWIQIGNLQRNKAKLIVAYGAELQSLDSAKLAQTLNRLLDQAG 126
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG--NPKPHFY 175
R L V I+VNT E K G+ P +T + L + +L++ GLM + + + F
Sbjct: 127 RTLEVMIEVNTSGEDAKHGVAPEETLELARLVIDQPRLHLIGLMTVAAHVDRVGERGVFE 186
Query: 176 LLSEIA--RECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ S++A RE L +LSMGM+ DFELAIA+G+T VR+GS +FG R
Sbjct: 187 MFSQLAGLREAVLGLPGGADCRELSMGMSGDFELAIAAGSTCVRVGSALFGPR 239
>gi|238018688|ref|ZP_04599114.1| hypothetical protein VEIDISOL_00532 [Veillonella dispar ATCC 17748]
gi|237865159|gb|EEP66449.1| hypothetical protein VEIDISOL_00532 [Veillonella dispar ATCC 17748]
Length = 239
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 106/225 (47%), Gaps = 18/225 (8%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +Q++ ++ R D+ LVAV+K + G EN++QEAK+K +
Sbjct: 17 LHAIQQRMADAMASVGRV-DTALLVAVTKNHPVSAVEEVARLGVTHVGENRVQEAKEKQL 75
Query: 67 PLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
+ W IG LQ NKV + V +FD+I +V K + K + V
Sbjct: 76 TYKGPALTW----HLIGHLQVNKVRQAVPMFDLIHSVDSRKLLDEIEKVATKHDKVQDVL 131
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVN E K+G+ + + + + V GLMC+ P +P +P F + + +
Sbjct: 132 LQVNVAREASKTGMSVEEFPEIRDYAKTLPHVRVRGLMCMAPFFDDPEEARPIFRVANAL 191
Query: 181 ARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K + LSMGMT DFE+A+ GA VR+G+ IFG R
Sbjct: 192 YEDMKGYFEEGQIQYLSMGMTHDFEVALEEGANIVRVGTAIFGGR 236
>gi|72389014|ref|XP_844802.1| hypothetical protein [Trypanosoma brucei TREU927]
gi|62176349|gb|AAX70461.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70801336|gb|AAZ11243.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|261328062|emb|CBH11039.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 257
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 103/210 (49%), Gaps = 22/210 (10%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+V LVAVSK ++ CG F EN +QE +K L D+ FIG LQSNK
Sbjct: 42 AVKLVAVSKTKSPACLQALYDCGHRDFGENYVQEVVEKAAVL--PGDIHWHFIGHLQSNK 99
Query: 87 VSEI---VSLFDVIETVSREKTASLLSLEMI--KQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
V E+ VS +++TV E A L + + R L VY+QVNT E KSG+ P
Sbjct: 100 VKELLSGVSGLQIVQTVDSESLAQKLDSGCVSYRGGRPLDVYVQVNTSGETTKSGVEPGS 159
Query: 142 TKDFVILCRQKY----QLNVEGLMCI--PPAMGNPKPHFYLL---SEIARECKLTK---- 188
V L R L + GLM I P P+ LL E+A L
Sbjct: 160 AT--VELARHISTKCPNLRLTGLMTIGMPDYTSRPENFECLLRCREEVAAALNLDATTLA 217
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D+ AI G+T VR+G+G+FG+R
Sbjct: 218 LSMGMSGDYTNAIRMGSTVVRVGTGLFGQR 247
>gi|218767245|ref|YP_002341757.1| hypothetical protein NMA0217 [Neisseria meningitidis Z2491]
gi|121051253|emb|CAM07528.1| hypothetical protein NMA0217 [Neisseria meningitidis Z2491]
Length = 228
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 96/206 (46%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AV K S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQEWYDKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + T+ R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTICRLKTAVRLSRQRPSSMPPLQVCIEVNIAGEAVKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE-----CKLTKLSMG 192
+ + + + V GLMC+ A + K F + ++ + K LSMG
Sbjct: 142 EAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQTMRKLLADLNTAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|18391333|ref|NP_563897.1| alanine racemase family protein [Arabidopsis thaliana]
gi|16226282|gb|AAL16123.1|AF428291_1 At1g11930/F12F1_20 [Arabidopsis thaliana]
gi|21436037|gb|AAM51596.1| At1g11930/F12F1_20 [Arabidopsis thaliana]
gi|332190696|gb|AEE28817.1| putative pyridoxal phosphate-dependent enzyme, YBL036C type
[Arabidopsis thaliana]
Length = 257
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 116/223 (52%), Gaps = 18/223 (8%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
Q++ +A A R D + +VAVSK IR GQ F EN +QE +K L +
Sbjct: 32 QRVNQAAEKAGRGSDQIRVVAVSKTKPVSLIRQVYDAGQRSFGENYVQEIIEKAPQLPE- 90
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFD---VIETVSREKTASLLSLEMIKQSRF-LPVYIQVN 127
D++ FIG+LQSNKV ++S +E+V EK A++L + R L V++QVN
Sbjct: 91 -DIEWHFIGNLQSNKVKPLLSGVPNLVTVESVDDEKIANMLDRVVGNIGRKPLKVFVQVN 149
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAMGNPKP-HFYLL----SEIA 181
T E K G+ P+ ++ L GLM I A P +F LL SE+
Sbjct: 150 TSGEDSKFGVEPSGCVGLAKHVKEACSNLEFSGLMTIGMADYTSTPENFKLLAKCRSEVC 209
Query: 182 RECKL----TKLSMGMTRDFELA--IASGATSVRIGSGIFGER 218
+E + +LSMGM+ DFELA I G+T+VRIGS IFG R
Sbjct: 210 KELGIPEEQCELSMGMSGDFELALQIELGSTNVRIGSTIFGAR 252
>gi|284048328|ref|YP_003398667.1| alanine racemase domain protein [Acidaminococcus fermentans DSM
20731]
gi|283952549|gb|ADB47352.1| alanine racemase domain protein [Acidaminococcus fermentans DSM
20731]
Length = 234
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 109/231 (47%), Gaps = 19/231 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPK---DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
L +K+ + KI+ + K PK D V+++AV+K + + L+ G EN++Q
Sbjct: 2 LQDKIAAVEAKIQEALANRKEPKATGDKVTILAVTKNHPADIVTETLAAGLTEIGENRVQ 61
Query: 60 EA--KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
EA K+ +P W IG LQ+NK V F +IE+V K + L +
Sbjct: 62 EAMHKQAVLPPGGNW----HLIGHLQTNKARHAVEHFALIESVDSLKLMAHLEKAAAELD 117
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKP-- 172
+ V +Q+N E+QKSG P + V + + V G+M I A + +P
Sbjct: 118 KVQDVLLQINEAGEVQKSGFAPEDFRAAVPELKNYPHIRVRGVMVIAQATDHVEETRPVF 177
Query: 173 -----HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L + + + LSMGMT D+ +A+ GA VR+GS +FG R
Sbjct: 178 AAGYRDFLFLRDALPDIPVDILSMGMTHDYWIAVEEGANEVRVGSALFGAR 228
>gi|295087674|emb|CBK69197.1| pyridoxal phosphate enzyme, YggS family [Bacteroides xylanisolvens
XB1A]
Length = 222
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 111/214 (51%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+LA+ P+ V LVAVSK ++ I A GQ IF E+K+QE K+ L K D++ F
Sbjct: 10 VLAELPQ-GVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQEMTAKYESLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK+ ++ +I + K + ++ + +K R + +Q++ E K G
Sbjct: 67 IGHLQTNKIKYMIPYVAMIHGIDSYKLLAEVNKQAVKAGRTVNCLLQIHVAQEETKFGFS 126
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPP---AMGNPKPHFYLLSEIARECKLT------ 187
P + K+ + + K +V GLM + + F L+ + E K T
Sbjct: 127 PEECKEMLNVGEWKELTHVRICGLMGMASNTDCIEQINREFCSLNRLFNEIKTTWFTHSD 186
Query: 188 ---KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 187 TFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGER 220
>gi|268611658|ref|ZP_06145385.1| alanine racemase domain protein [Ruminococcus flavefaciens FD-1]
Length = 240
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 110/225 (48%), Gaps = 11/225 (4%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE---A 61
N Q I+ + + V ++AV+K V ++ + G + EN++QE
Sbjct: 12 NNFSTITQNIKEAFDKYRNDGSKVDIMAVTKTVPAEVVNWIFDWGMDLMGENRVQEYLSK 71
Query: 62 KKKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + K D ++ FIG LQ+NKV I++ D+I++V K A + ++ +
Sbjct: 72 KDLYSASTKSGDPPRIHFIGHLQTNKVKYIINEMDMIQSVDSVKLAHEIDRLAKANNKVM 131
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA------MGNPKPHF 174
+ +VN G E KSGI P++ ++ + + V GLM IPP +G F
Sbjct: 132 DILCEVNIGGEESKSGIAPDKLEELLEAAASMENIRVRGLMTIPPPTDSDIFLGRMGELF 191
Query: 175 YLLSEIARE-CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + RE + LSMGMT D+ A+ G+T VRIGSG+FG R
Sbjct: 192 NKLKDEKRENISMDILSMGMTHDYIDAVKYGSTLVRIGSGLFGAR 236
>gi|156932607|ref|YP_001436523.1| hypothetical protein ESA_00389 [Cronobacter sakazakii ATCC BAA-894]
gi|156530861|gb|ABU75687.1| hypothetical protein ESA_00389 [Cronobacter sakazakii ATCC BAA-894]
Length = 235
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 108/222 (48%), Gaps = 10/222 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +QKI +A R + V+L+AVSK + I A++ GQ F EN +QE +K +
Sbjct: 8 LTQVRQKISAAAQRCGRAPEEVTLLAVSKTKPASAIAEAIAAGQREFGENYVQEGVEKIL 67
Query: 67 PLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
R + FIG LQSNK + FD TV R + A+ L+ + + L V I
Sbjct: 68 HFRDAGVDGLTWHFIGPLQSNKSRLVAEHFDWCHTVDRLRIATRLNEQRPDEMTPLNVLI 127
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA--- 181
QVN E KSGI ++ +L + GLM IP F + E+A
Sbjct: 128 QVNISDEQSKSGIALSELDALAEQIAALPRLRLRGLMAIPAPEKEYARQFAVACEMAAAF 187
Query: 182 -----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 188 TALKARYPTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|325141275|gb|EGC63773.1| hypothetical protein TIGR00044 [Neisseria meningitidis CU385]
Length = 228
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 96/206 (46%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AV K S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTAVRLSEQRPSSMPPLQVCIEVNIAGEAVKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE-----CKLTKLSMG 192
+ + + + V GLMC+ A + K F + ++ + K LSMG
Sbjct: 142 EAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQTMRKLLADLNTAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|325915089|ref|ZP_08177417.1| pyridoxal phosphate enzyme, YggS family [Xanthomonas vesicatoria
ATCC 35937]
gi|325538701|gb|EGD10369.1| pyridoxal phosphate enzyme, YggS family [Xanthomonas vesicatoria
ATCC 35937]
Length = 285
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ V L+AVSK + + + GQ F EN +QEA K LR E ++ IG LQS
Sbjct: 79 RSDVRLLAVSKTKPADAVAALAAQGQRAFGENYVQEAHTKIAALR-ELGLEWHLIGHLQS 137
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK FD ++TV R K LL+ L V IQVN E K G P+
Sbjct: 138 NKADIASQYFDWVQTVDRAKLIPLLARYRPDDRAPLNVLIQVNIDDEDSKYGCAPDAIDR 197
Query: 145 FVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI-----ARECKLTKLSMGMTRD 196
+ +L + GLM IP P F + ++ R ++ LSMGM+ D
Sbjct: 198 LADAIALQPRLQLRGLMAIPAPFPDQARRVSAFARMQDLFAQLQQRHRQVDTLSMGMSAD 257
Query: 197 FELAIASGATSVRIGSGIFGER 218
F AIA+GAT VR+G+ +FG R
Sbjct: 258 FAEAIAAGATMVRVGTALFGAR 279
>gi|332162811|ref|YP_004299388.1| hypothetical protein YE105_C3191 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318604348|emb|CBY25846.1| hypothetical protein YggS, proline synthase co-transcribed
bacterial homolog PROSC [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325667041|gb|ADZ43685.1| hypothetical protein YE105_C3191 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330859001|emb|CBX69359.1| UPF0001 protein yggS [Yersinia enterocolitica W22703]
Length = 231
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 106/228 (46%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + KI +A R + V+L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIEQNLQDVRAKIAAAARNCGRSPEEVTLLAVSKTKSVSAIEEAIAAGQYAFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + ++ FIG LQSNK + F TV R K A LS + +
Sbjct: 63 VDKIHYFAESAHASQLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPPEMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L + IQVN E KSGI + + L++ GLM IP + + +
Sbjct: 123 ALNILIQVNISDEQSKSGITLAELPALAASISELPHLHLRGLMAIPAPETDYQRQLAVFE 182
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ A ++ LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 183 QMNQAFLTLKASYPQMDTLSMGMTDDMVAAIAAGSTLVRIGTAIFGSR 230
>gi|182681687|ref|YP_001829847.1| alanine racemase domain-containing protein [Xylella fastidiosa M23]
gi|182631797|gb|ACB92573.1| alanine racemase domain protein [Xylella fastidiosa M23]
gi|307580125|gb|ADN64094.1| alanine racemase domain-containing protein [Xylella fastidiosa
subsp. fastidiosa GB514]
Length = 261
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 95/207 (45%), Gaps = 11/207 (5%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R SV+L+ VSK D IR++ G ENK Q+A KW + D+ IG L
Sbjct: 44 RDPSSVTLLPVSKTADEVHIRLSYEAGCRKLGENKAQDAYHKWEAMSDLTDLYWSVIGHL 103
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q+NK + + + + A L + + R L V IQVNT E K G+ P +
Sbjct: 104 QTNKAKLVARFASEFQALDSFRVAEALERRLQIEGRSLDVLIQVNTSGETNKYGLPPEEV 163
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPK------PHFYLLSEIAREC-----KLTKLSM 191
FV L V GLM + G+ +L + ++ +T+LSM
Sbjct: 164 VRFVQALSAYPALRVRGLMTLAMLSGDTSRVRQCFTQLRILRDRIQQASPQGHHITELSM 223
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D E+AI GAT VR+G I+G R
Sbjct: 224 GMSGDLEIAIEEGATVVRVGQAIYGAR 250
>gi|237712817|ref|ZP_04543298.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262408826|ref|ZP_06085371.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294648180|ref|ZP_06725720.1| pyridoxal phosphate enzyme, YggS family [Bacteroides ovatus SD CC
2a]
gi|294810758|ref|ZP_06769406.1| pyridoxal phosphate enzyme, YggS family [Bacteroides xylanisolvens
SD CC 1b]
gi|298484090|ref|ZP_07002258.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. D22]
gi|229447145|gb|EEO52936.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262353037|gb|EEZ02132.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292636455|gb|EFF54933.1| pyridoxal phosphate enzyme, YggS family [Bacteroides ovatus SD CC
2a]
gi|294442091|gb|EFG10910.1| pyridoxal phosphate enzyme, YggS family [Bacteroides xylanisolvens
SD CC 1b]
gi|298269771|gb|EFI11364.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. D22]
Length = 222
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 111/214 (51%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+LA+ P+ V LVAVSK ++ I A GQ IF E+K+QE K+ L K D++ F
Sbjct: 10 VLAELPQ-GVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQEMTAKYESLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK+ ++ +I + K + ++ + +K R + +Q++ E K G
Sbjct: 67 IGHLQTNKIKYMIPYVAMIHGIDSYKLLAEVNKQAVKAGRTVNCLLQIHVAQEETKFGFS 126
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPP---AMGNPKPHFYLLSEIARECKLT------ 187
P + K+ + + K +V GLM + + F L+ + E K T
Sbjct: 127 PEECKEMLNVGEWKELTHVRICGLMGMASNTDCIEQINREFCSLNRLFNEIKTTWFTHSD 186
Query: 188 ---KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 187 TFCELSMGMSHDYHEAIAAGSTLVRVGSKIFGER 220
>gi|329955861|ref|ZP_08296664.1| pyridoxal phosphate enzyme, YggS family [Bacteroides clarus YIT
12056]
gi|328525241|gb|EGF52291.1| pyridoxal phosphate enzyme, YggS family [Bacteroides clarus YIT
12056]
Length = 221
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 111/214 (51%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+L++ P + V LVAVSK ++ I A + GQ +F E+K+QE K+ L K D++ F
Sbjct: 9 VLSELP-EGVRLVAVSKFHPNEAIEEAYNAGQRVFGESKVQEMTAKYESLPK--DIEWHF 65
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK+ IV +I V K + ++ + K R + +Q++ E K G
Sbjct: 66 IGHLQTNKIKYIVPYVALIHGVDSYKLLTEINKQAAKAGRMVNCLLQLHIAQEETKFGFS 125
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNP---KPHFYLLSEIARECKLT------ 187
++ ++ + K N+ GLM + N K F L+ +E K T
Sbjct: 126 FDECREMLTGDEWKELKNIRICGLMGMATNTDNVEQIKAEFCSLNSFFQEVKATWFSNAE 185
Query: 188 ---KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 186 WFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGER 219
>gi|28198973|ref|NP_779287.1| hypothetical protein PD1080 [Xylella fastidiosa Temecula1]
gi|28057071|gb|AAO28936.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
Length = 241
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 95/207 (45%), Gaps = 11/207 (5%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R SV+L+ VSK D IR++ G ENK Q+A KW + D+ IG L
Sbjct: 24 RDPSSVTLLPVSKTADEVHIRLSYEAGCRKLGENKAQDAYHKWEAMSDLTDLYWSVIGHL 83
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q+NK + + + + A L + + R L V IQVNT E K G+ P +
Sbjct: 84 QTNKAKLVARFASEFQALDSFRVAEALERRLQIEGRSLDVLIQVNTSGETNKYGLPPEEV 143
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPK------PHFYLLSEIAREC-----KLTKLSM 191
FV L V GLM + G+ +L + ++ +T+LSM
Sbjct: 144 VRFVQALSAYPALRVRGLMTLAMLSGDTSRVRQCFTQLRILRDRIQQASPQGHHITELSM 203
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D E+AI GAT VR+G I+G R
Sbjct: 204 GMSGDLEIAIEEGATVVRVGQAIYGAR 230
>gi|325203182|gb|ADY98635.1| conserved hypothetical protein TIGR00044 [Neisseria meningitidis
M01-240355]
Length = 228
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 96/206 (46%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AV K S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTAVRLSEQRPSSMPPLQVCIEVNIAGEAVKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE-----CKLTKLSMG 192
+ + + + V GLMC+ A + K F + ++ + K LSMG
Sbjct: 142 EAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQTMRKLLADLNTAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|311895534|dbj|BAJ27942.1| hypothetical protein KSE_21190 [Kitasatospora setae KM-6054]
Length = 262
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 110/233 (47%), Gaps = 21/233 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
LG L V +++I ++ A RP+ V+L+ V+K ++ + G AEN+ Q+A
Sbjct: 30 LGANLDVVERRIADACAAAGRPRGEVTLIVVTKTYPAEDSALLAGLGVTDVAENRDQDAA 89
Query: 63 KKW---IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR- 118
K + L W F+G LQ+NK +V DV+ +V R + L+ + R
Sbjct: 90 PKAERCVELPLTW----HFVGQLQTNKARSVVRYSDVVHSVDRARLVDSLAAAVRAAERP 145
Query: 119 ----FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG----NP 170
+ V ++ G ++G+ P + L ++G+M + P G +P
Sbjct: 146 PLGCLVQVALEKEAGEGEHRAGVAPAEVLALAERIADTPGLRLDGVMTVAPLAGPLAGDP 205
Query: 171 KPHFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L+EIA + + T +S GM+ D E AIA+GAT VR+G+ + G R
Sbjct: 206 ARAFARLAEIASDVRAAHPAATMVSAGMSGDLEQAIAAGATHVRVGTAVLGVR 258
>gi|269127132|ref|YP_003300502.1| alanine racemase domain-containing protein [Thermomonospora curvata
DSM 43183]
gi|268312090|gb|ACY98464.1| alanine racemase domain protein [Thermomonospora curvata DSM 43183]
Length = 244
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 17/204 (8%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW-----IPLRKEWDVQLRFIG 80
+ ++L+AV+K + +R+ G EN+ QEA K +PL W F+G
Sbjct: 42 EQITLIAVTKTFPASDVRLLAGLGVAHVGENRDQEAAPKAAQCADLPL--TW----HFVG 95
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ-KSGIMP 139
LQ+NK + DV+ +V R + S LS ++ R L +QV+ + + G P
Sbjct: 96 QLQTNKARSVARYADVVHSVDRSRLVSALSAGALRAGRTLRCLVQVSLEEHAEGRGGAAP 155
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK-----LTKLSMGMT 194
+ + L + G+M + P +P P F L+++A E + T +S GM+
Sbjct: 156 ERVPELAAQIASAEGLELGGVMAVAPLGADPAPAFERLAQVAAELRAEHPAATIISAGMS 215
Query: 195 RDFELAIASGATSVRIGSGIFGER 218
D E AIA GAT +RIG+ + G R
Sbjct: 216 GDLEQAIACGATHLRIGTALLGGR 239
>gi|225378092|ref|ZP_03755313.1| hypothetical protein ROSEINA2194_03752 [Roseburia inulinivorans DSM
16841]
gi|225210093|gb|EEG92447.1| hypothetical protein ROSEINA2194_03752 [Roseburia inulinivorans DSM
16841]
Length = 231
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L+ +++++ + A R ++ V+L+AVSK + ++ F ENK+QE
Sbjct: 2 LKDNLKNVEERVQEACDRAGRKREEVTLIAVSKTKPIEMLQEIYDENIRDFGENKVQELC 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + K D++ IG LQ NKV IV +I +V + A ++++ K++ +P+
Sbjct: 62 DKIEKMPK--DIKWHMIGHLQRNKVKYIVGQVALIHSVDSYRLAEEINIQAKKKNIIVPI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
++VN +E K GI V + + ++GLM I P + N + +F + +
Sbjct: 120 LVEVNIAHEESKFGISEEDAIQLVEEIAELENVRIKGLMTIAPYVENAEDNRLYFRKIKD 179
Query: 180 IARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + + LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 180 LSVDIAAKNIDNVSMEILSMGMTGDYEVAIEEGATMVRVGTGIFGAR 226
>gi|325135265|gb|EGC57888.1| hypothetical protein TIGR00044 [Neisseria meningitidis M13399]
gi|325137262|gb|EGC59856.1| hypothetical protein TIGR00044 [Neisseria meningitidis M0579]
Length = 228
Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 96/206 (46%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AV K S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPPLQVCIEVNIAGEAVKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE-----CKLTKLSMG 192
+ + + + V GLMC+ A + K F + ++ + K LSMG
Sbjct: 142 EAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQTMRKLLADLNTAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|254671716|emb|CBA09509.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
gi|325197354|gb|ADY92810.1| conserved hypothetical protein TIGR00044 [Neisseria meningitidis
G2136]
Length = 228
Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 96/206 (46%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AV K S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + TV R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPPLQVCIEVNIAGEAVKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE-----CKLTKLSMG 192
+ + + + V GLMC+ A + K F + ++ + K LSMG
Sbjct: 142 EAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQTMRKLLADLNTAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|218960505|ref|YP_001740280.1| predicted enzyme with a TIM-barrel fold [Candidatus Cloacamonas
acidaminovorans]
gi|167729162|emb|CAO80073.1| predicted enzyme with a TIM-barrel fold [Candidatus Cloacamonas
acidaminovorans]
Length = 233
Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 109/206 (52%), Gaps = 14/206 (6%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
KD ++LVAV+K + I AL G EN++QEA++K IP K FIG LQS
Sbjct: 24 KDEITLVAVTKTHPVEIIETALQSGIEHIGENRVQEARRK-IPFLKVPYKGFHFIGHLQS 82
Query: 85 NKVSEIVSLFD-VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NK+++++ L +I++V + A L L + + +R + IQ+N+ E KSG + K
Sbjct: 83 NKINQVLELKPFLIQSVHSLELAKKLHLALGRTNRTQDILIQINSSQEFSKSGFSLAEAK 142
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK--------LTKLSMG 192
+ + L+++GLM I + P +P F + + E K + LSMG
Sbjct: 143 NAICQISTYSNLHIKGLMTIG-MLAEPEVSRPLFARMKSLFEEIKALAIPNVDMQYLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D+ A+ G+ +RIG+ IFGER
Sbjct: 202 MSNDYVQALEEGSNMLRIGTAIFGER 227
>gi|312867083|ref|ZP_07727293.1| pyridoxal phosphate enzyme, YggS family [Streptococcus
parasanguinis F0405]
gi|311097212|gb|EFQ55446.1| pyridoxal phosphate enzyme, YggS family [Streptococcus
parasanguinis F0405]
Length = 222
Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 18/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + +Q++E + A R +D V+++AV+K VD + G EN++ +
Sbjct: 1 MNLVENADLVRQQVETARNKANR-QDQVNVIAVTKYVDVTTTEALVKTGIQHIGENRVDK 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
+K+ L KE+D+ IGSLQ KV ++++L D + K L+ E+ K++
Sbjct: 60 FLEKYQAL-KEYDLTWHLIGSLQRRKVKDVINLVDYFHALDSVK----LAQEIQKRAEHP 114
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ ++QVN E K G P++ D + Q ++ + GLM + P + + + S+
Sbjct: 115 IKCFLQVNISGEESKHGFAPDELDDVLAEIAQLDKIEIVGLMTMAPFEASQEELQDIFSK 174
Query: 180 IARECK-----------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ K ++LSMGM+RDFE+AIA+GAT VRIG+ F
Sbjct: 175 THQLQKQLEKKQLKNMPFSELSMGMSRDFEVAIANGATYVRIGTSFF 221
>gi|224369408|ref|YP_002603572.1| hypothetical protein HRM2_23130 [Desulfobacterium autotrophicum
HRM2]
gi|223692125|gb|ACN15408.1| conserved hypothetical protein [Desulfobacterium autotrophicum
HRM2]
Length = 230
Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 112/225 (49%), Gaps = 12/225 (5%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N+L+ + I+++A A R D + LV VSK + K A+ G I EN +QEA +K
Sbjct: 6 NRLKAIRNAIKDAAQSAGRNPDEILLVGVSKRQSAAKAMAAVHAGVTILGENYIQEAVEK 65
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
I K+ + FIG LQ+NK V FD+I TV K A + + K + + I
Sbjct: 66 -IETLKDLEASWHFIGHLQTNKARFAVQHFDLIHTVDSIKLAREIDKQAQKIKKIQKILI 124
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA 181
Q+N E KSG + V + + GLM +PP +P +P F L++I
Sbjct: 125 QINISQESSKSGARADDALALVRGVSLLKNVAITGLMGMPPFFDDPEQARPFFRELAQIR 184
Query: 182 RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + LSMGM+ DF+ AI G+T VRIG+ IFG R
Sbjct: 185 SKIEDAKIPNVLMDHLSMGMSGDFKAAIEEGSTMVRIGTAIFGAR 229
>gi|150016464|ref|YP_001308718.1| alanine racemase domain-containing protein [Clostridium
beijerinckii NCIMB 8052]
gi|149902929|gb|ABR33762.1| alanine racemase domain protein [Clostridium beijerinckii NCIMB
8052]
Length = 226
Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 112/219 (51%), Gaps = 17/219 (7%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
KQ IE L + + V+L+AVSK + + A G F ENK+QE KK +
Sbjct: 4 KQNIEE---LRSKIPEQVTLLAVSKTKPLEALEDAYMAGMRDFGENKVQELVKKSENFHE 60
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
DV+ FIG LQSNKV +V +I ++S + + + K ++ IQ+N G
Sbjct: 61 --DVRWHFIGQLQSNKVKYLVDKVHLIHSLSSISLLNEIEKQFSKVNKVANTLIQINIGR 118
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-- 185
E KSGI+ +F+ + ++V+G+M I P +G+ + +F +I E K
Sbjct: 119 EESKSGILEEDLYEFIEAIEKCKFVSVKGIMAIIP-IGDEESNRKYFKKTKKIFDELKEK 177
Query: 186 ------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGMT DF AI G+ VRIG+GIFGER
Sbjct: 178 NYTNISMKILSMGMTHDFMTAIEEGSNLVRIGTGIFGER 216
>gi|229541188|ref|ZP_04430248.1| alanine racemase domain protein [Bacillus coagulans 36D1]
gi|229325608|gb|EEN91283.1| alanine racemase domain protein [Bacillus coagulans 36D1]
Length = 225
Score = 98.6 bits (244), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 110/231 (47%), Gaps = 21/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L +KIE + A R + V ++AV+K V +++ + AL G EN+
Sbjct: 1 MKVSENLARINEKIEKACQRAGRSRGDVEIIAVTKYVTTERAKEALEAGIQHLGENRDDG 60
Query: 61 AKKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
KK+ L R W FIG+LQ+ KV I+ I ++ R A + K +
Sbjct: 61 LLKKYEALGNRPVW----HFIGTLQTRKVKNIIDKVSYIHSLDRLSLAEEIEKRAAKLDK 116
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+ +IQVN E K G+ P Q DFV + + V GLM + P + + F
Sbjct: 117 EINCFIQVNVSGEESKHGMAPGQVVDFVRKLKDFPHIRVAGLMTMAPLTEDEDVIRRTFR 176
Query: 176 LLSEIARE----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L ++ ++ C+ +LSMGM+ DFE+A+ GAT VRIG+ + G
Sbjct: 177 GLKQLQQDIESLHLDYAPCR--ELSMGMSNDFEIAVEEGATFVRIGTALVG 225
>gi|218262755|ref|ZP_03477113.1| hypothetical protein PRABACTJOHN_02792 [Parabacteroides johnsonii
DSM 18315]
gi|218223157|gb|EEC95807.1| hypothetical protein PRABACTJOHN_02792 [Parabacteroides johnsonii
DSM 18315]
Length = 222
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 106/207 (51%), Gaps = 20/207 (9%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSN 85
V+LVAVSK ++ ++ A GQ +F E++ QE AK+K +P EW FIG LQSN
Sbjct: 18 VTLVAVSKFHPAEALQEAYDAGQRVFGESRAQELTAKQKVLPSDIEW----HFIGPLQSN 73
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV +I I ++ K ++ + K R + V ++++ E K G P++ ++
Sbjct: 74 KVKDIAPFIHTIHSIDSLKLLQEVNKQAAKHGRIVRVLLEIHVAQEEAKHGFSPDECREL 133
Query: 146 VILCRQKY--QLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK---------LTKLSM 191
+ + L + GLM + N + F+ + ++ E K +LSM
Sbjct: 134 LHSLSPEALPNLRICGLMGMATNTDNTSQIQDEFHKIHKLFTELKSSVFKGDEYFCELSM 193
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D+ +AI G+T +RIG+ IFGER
Sbjct: 194 GMSHDYPIAIREGSTMIRIGTSIFGER 220
>gi|332022075|gb|EGI62400.1| Proline synthetase co-transcribed bacterial-like protein protein
[Acromyrmex echinatior]
Length = 252
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 110/211 (52%), Gaps = 21/211 (9%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQE-AKKKWIPLRKEW--DVQLRFIGSLQSNK 86
LVAVSK+ + I A GQ F EN + E +K + PL +E +Q FIG LQ NK
Sbjct: 33 LVAVSKLQSTVSIVSAYEAGQRNFGENYINELVEKAFSPLIREKCKQIQWHFIGHLQRNK 92
Query: 87 VSEIVSLFD--VIETVSREKTASLLSL---EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
V++++S+ + +IETV ++ A+ L+ K + L V +QVNT E +K+G Q
Sbjct: 93 VNKVLSIPNLYIIETVDSDRLANALNNSWPRFRKNNDKLNVMVQVNTSQEKEKNGCDIAQ 152
Query: 142 TKDFV-ILCRQKYQLNVEGLMCIP----PAMGNPKPHFYLL--------SEIARECKLTK 188
V + + LN GLM I P P F L E+ + K +
Sbjct: 153 LSTLVKHVVENCFNLNFMGLMTIGMYGYDIKDGPNPDFICLIKCREKIHDELGIDIKDIE 212
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
LSMGM+ D+E AI G+T+VR+GS IFG RP
Sbjct: 213 LSMGMSSDYEHAIELGSTNVRVGSVIFGIRP 243
>gi|87120925|ref|ZP_01076817.1| Predicted enzyme with a TIM-barrel fold [Marinomonas sp. MED121]
gi|86163763|gb|EAQ65036.1| Predicted enzyme with a TIM-barrel fold [Marinomonas sp. MED121]
Length = 229
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 101/205 (49%), Gaps = 8/205 (3%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81
+R SV L+AVSK I A + GQ +F EN +QEA K L ++ FIG
Sbjct: 22 QRALGSVKLLAVSKTKPVSAIEEAYAQGQRLFGENYVQEAADKSQQLTHLKGIEWHFIGP 81
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
+QSNK + + T+ R K A L+ + L V IQ+N E KSGI +
Sbjct: 82 IQSNKTRILAQSMHWVHTLERAKIAQRLNEQRPADLPKLNVCIQINISGEESKSGISLAE 141
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPA-------MGNPKPHFYLLSEIARECK-LTKLSMGM 193
+ V + R + L + GLM IP + +P + +A + + LS+GM
Sbjct: 142 LDELVEIVRNQPNLILRGLMAIPAPQVSLADQLATYQPLYEAYHALAESVETVDTLSIGM 201
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D E AIASG++ VRIG+ IFG R
Sbjct: 202 SGDMEAAIASGSSMVRIGTAIFGAR 226
>gi|118443487|ref|YP_878018.1| hypothetical protein NT01CX_1945 [Clostridium novyi NT]
gi|118133943|gb|ABK60987.1| conserved hypothetical protein [Clostridium novyi NT]
Length = 223
Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 105/206 (50%), Gaps = 15/206 (7%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
PKD V+L+AVSK +++ A C F ENK+QE K+ K DV+ IG LQ
Sbjct: 15 PKD-VTLLAVSKTRTLEELEEAYKCNIRDFGENKVQELIYKFDNFHK--DVRWHLIGHLQ 71
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
+NKV IV +I ++ K + + V IQ+N G + KSG++ +
Sbjct: 72 TNKVKYIVGKVYLIHSLDSIKLLKEIERRYSIANEIANVLIQINIGRDPNKSGVLLENLQ 131
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNP-----------KPHFYLLSEIARECKLTKLSMG 192
+ + C + + V+GLM + P GN K + +L +++ K+ LSMG
Sbjct: 132 ELIDECEKCKNVKVKGLMTVIPK-GNSATNIEYFIEMKKIYDFLSNKLYNNVKMEFLSMG 190
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
MT D++ A+ GA VRIG GIFG+R
Sbjct: 191 MTGDYKEALKEGANIVRIGEGIFGKR 216
>gi|251797863|ref|YP_003012594.1| alanine racemase domain protein [Paenibacillus sp. JDR-2]
gi|247545489|gb|ACT02508.1| alanine racemase domain protein [Paenibacillus sp. JDR-2]
Length = 242
Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 17/232 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L +++ ++++ + + R ++ V+++AV+K V + + A G EN+ Q+A
Sbjct: 8 ALQERIEEVERRVAAACKRSGRSREEVNIIAVTKYVSLETAQAAHQLGLRHLGENRWQDA 67
Query: 62 KKKW------IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K+KW + FIGSLQ+NKV +++ F I ++ R A + +
Sbjct: 68 KEKWEAISDSVTGENGGQAVWHFIGSLQTNKVKDVIGKFTYIHSLDRLSLAQAIDKRASQ 127
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKP 172
+P +QVN E K G+ P Q F+ ++ L + GLM + P +P
Sbjct: 128 LGLTVPCLVQVNVSGEQSKHGLDPEQLPAFLAELKELSSLRIIGLMTMAPYETEAEETRP 187
Query: 173 HFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
F L ++ E +T+LSMGM+ DFE+AI GAT +R+G+ + G
Sbjct: 188 IFRSLRKLRDEMNERAILAESMTELSMGMSGDFEVAIEEGATWIRLGTILVG 239
>gi|148980488|ref|ZP_01816085.1| Predicted enzyme with a TIM-barrel fold protein [Vibrionales
bacterium SWAT-3]
gi|145961213|gb|EDK26527.1| Predicted enzyme with a TIM-barrel fold protein [Vibrionales
bacterium SWAT-3]
Length = 234
Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 98/207 (47%), Gaps = 11/207 (5%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK---KKWIPLRKEWDVQLRFI 79
R +SV L+AVSK I A GQV F EN +QE K + +++ FI
Sbjct: 24 RAPESVQLLAVSKTKPIDAILEAALGGQVAFGENYVQEGVDKVKHFSEQHSNLNLEWHFI 83
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G +QSNK I F + +V R+K A L+ + + L V IQVNT E KSG
Sbjct: 84 GPIQSNKTRPIAESFQWVHSVDRDKIAQRLNDQRPSELPPLQVLIQVNTSGEASKSGTSE 143
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSM 191
L L + GLM IP + + + S++ A+ + LSM
Sbjct: 144 ESVFALAELISSLPNLTLRGLMSIPANVSDYQSQLNAFSQLAELKDKLAAKYPDIDTLSM 203
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D + A+ +G+T VRIG+ IFG R
Sbjct: 204 GMSGDMDAAVEAGSTMVRIGTAIFGAR 230
>gi|138894666|ref|YP_001125119.1| hypothetical protein GTNG_0996 [Geobacillus thermodenitrificans
NG80-2]
gi|196247719|ref|ZP_03146421.1| alanine racemase domain protein [Geobacillus sp. G11MC16]
gi|134266179|gb|ABO66374.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
gi|196212503|gb|EDY07260.1| alanine racemase domain protein [Geobacillus sp. G11MC16]
Length = 224
Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 117/230 (50%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L +++IE + R V +VAV+K +++ + + L G V EN+ +
Sbjct: 1 MTVRDNLAAIRRQIEGACARVGRDPADVRIVAVTKYINAARAQEVLDAGIVDLGENRSDQ 60
Query: 61 AKKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS- 117
+K+ + K+ W FIG+LQS KV EI+ D I ++ R L+ E+ K++
Sbjct: 61 LLQKYEVIGKQATW----HFIGTLQSRKVKEIIDKVDYIHSLDRLS----LAKEIEKRAV 112
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK------ 171
R + ++QVN E K G+ P++T F+ R + V GLM + P +
Sbjct: 113 RPVKCFVQVNVSGEATKHGLAPDETVPFIEQLRSFPCIEVIGLMTMAPHTEDKSVLRACF 172
Query: 172 PHFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+L E + L T+LSMGM+ D+E+AI GAT VRIGS + G
Sbjct: 173 RQLRMLKERVQALNLPYAPCTELSMGMSNDYEIAIEEGATFVRIGSALVG 222
>gi|330995376|ref|ZP_08319286.1| pyridoxal phosphate enzyme, YggS family [Paraprevotella xylaniphila
YIT 11841]
gi|329575871|gb|EGG57395.1| pyridoxal phosphate enzyme, YggS family [Paraprevotella xylaniphila
YIT 11841]
Length = 223
Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 102/206 (49%), Gaps = 16/206 (7%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V LVAVSK I A + GQ +F E+ +QE ++K+ L K D++ FIG LQ+NK
Sbjct: 18 GVQLVAVSKYHPESCIEEAYAAGQRVFGESHVQELRRKYDNLPK--DIEWHFIGHLQTNK 75
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V I +I V K + + K R +P +Q++ E K G P++ + +
Sbjct: 76 VKYIAPYVAMIHAVDSMKLLLEVDKQGEKSGRVIPCLLQLHVAKEETKFGFTPDECRTLI 135
Query: 147 ILCRQKYQLNVE--GLMCIP---PAMGNPKPHFYLLSEIARECK---------LTKLSMG 192
K +V+ GLMC+ M + F+L E+ +E K + S G
Sbjct: 136 ADEEWKKLAHVQICGLMCMASNTDDMEQVRSEFHLAYELFKELKTGAFANAPYFKECSWG 195
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D+ +AI G+T +R+GS IFGER
Sbjct: 196 MSHDYPIAIEEGSTLIRVGSKIFGER 221
>gi|226479872|emb|CAX73232.1| putative Proline synthetase co-transcribed bacterial homolog
protein [Schistosoma japonicum]
Length = 253
Score = 98.2 bits (243), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 115/232 (49%), Gaps = 19/232 (8%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-AKKK 64
L +IE + ++ + LVAVSK + I A + GQ F ENK+ K
Sbjct: 4 NLHSILNRIEEARKVSTSGQKFCRLVAVSKEKPVQSIIEAYNIGQRHFGENKIVHLYDKS 63
Query: 65 WIP--LRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLL-SLEMIKQSRF 119
P ++ D++ FIG +Q+NK+ + + ++ +ET+ A +L SL +
Sbjct: 64 HSPEVVKCCPDIRWHFIGRIQTNKIKRLAGVNNLFMVETLDSISHAEILDSLWALNHQMP 123
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPA----MGNPKPHF 174
L + IQVNT E+QK GI P++ DF + K L V GLMCI P P F
Sbjct: 124 LKIMIQVNTSGELQKGGIKPSEVIDFYSQIKAKCSNLEVAGLMCIGQEGVDINSGPNPDF 183
Query: 175 Y--------LLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L S + + +LSMGM+ DFE AI G+T+VRIG+ IFG+R
Sbjct: 184 VKLVQCREKLASHLGKSPFDFELSMGMSHDFEHAIQLGSTNVRIGTAIFGQR 235
>gi|194334464|ref|YP_002016324.1| alanine racemase domain-containing protein [Prosthecochloris
aestuarii DSM 271]
gi|194312282|gb|ACF46677.1| alanine racemase domain protein [Prosthecochloris aestuarii DSM
271]
Length = 229
Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 114/231 (49%), Gaps = 18/231 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE- 60
++ L +++I S + A R + V L+AVSK + IR A GQ+ E+ +QE
Sbjct: 3 TISENLAAIQKEILTSCLKAGRSPEDVRLIAVSKTKPASLIREAYDAGQIDIGESYVQEF 62
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K P + V+ FIG LQSNK+ IV ++ ++ + TA LS ++ +
Sbjct: 63 LEKTASPELEGLPVRWHFIGHLQSNKIKYIVDKVYMVHSIDKLSTARELSKRAAAKNLTV 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP-----HFY 175
I+VNT E K G+ P + + + GLM I +P P F
Sbjct: 123 DYLIEVNTSGEPSKFGLSPEELLKTAGSFFDLPSVTLRGLMTI----ASPDPSLAHEEFK 178
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL+ + + + +T+LSMGM+ DFE AI +GAT VRIG+ +FG R
Sbjct: 179 LLANLLEQLRAKAPHPENITELSMGMSGDFEKAIDAGATMVRIGTALFGRR 229
>gi|237738364|ref|ZP_04568845.1| proline synthetase associated protein [Fusobacterium mortiferum
ATCC 9817]
gi|229420244|gb|EEO35291.1| proline synthetase associated protein [Fusobacterium mortiferum
ATCC 9817]
Length = 228
Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 119/227 (52%), Gaps = 18/227 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N ++ ++ I++ +I ++ V +AV+K VD++ + L CG +F ENK Q
Sbjct: 6 NIKNNIEEIQKDIKDYSIYPEK----VKFIAVTKYVDAEVMNSILDCGVKVFGENKAQVI 61
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K+K+ E D++ FIG+LQ NKV I +I +V++ A + ++ +R
Sbjct: 62 KEKYEKYLSEGRKDIEWHFIGNLQKNKVKYIAPFVKLIHSVNKLSLAQEIDKRALQNNRV 121
Query: 120 LPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+ V +++N E K G + K+ L K +N+ GLM + P + + + F
Sbjct: 122 IDVLLEINIAGEESKEGYELEELYKELPQLLELK-NINIIGLMTMAPFVDDETLVRGVFR 180
Query: 176 LLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L EI E KLT+LSMGMT D+++A+ GAT +R+G I+
Sbjct: 181 RLREIKDELNKKTFNGKLTELSMGMTNDYKIALEEGATIIRVGRKIY 227
>gi|253689812|ref|YP_003019002.1| alanine racemase domain protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756390|gb|ACT14466.1| alanine racemase domain protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 237
Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 109/228 (47%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ +Q+I +A R + ++L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDIRQQIATAAAHCARAPEDITLLAVSKTKPVSAIEEAIAAGQQAFGENYVQEG 62
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K ++ + ++ FIG LQSNK + FD TV R + A LS +
Sbjct: 63 VEKIHYFQENHPDTPLEWHFIGPLQSNKSRLVAENFDWFHTVDRLRIAQRLSEQRPATLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V +Q+N E KSGIM ++ + L + GLM IP + + +
Sbjct: 123 PLNVLLQINISGEPSKSGIMVDELAELAAGVAALPNLRLRGLMAIPAPETDYEQQLVVFK 182
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ A + LSMGMT D AI +G+T VRIG+ IFG R
Sbjct: 183 QMAALFQTLSATYPHIDTLSMGMTDDMRAAITAGSTLVRIGTAIFGAR 230
>gi|190346825|gb|EDK39002.2| hypothetical protein PGUG_03100 [Meyerozyma guilliermondii ATCC
6260]
Length = 256
Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 108/211 (51%), Gaps = 20/211 (9%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+V LVAVSK+ + I + G F EN +QE K L K D++ FIG LQ+ K
Sbjct: 42 NVRLVAVSKLKPASDILALYNHGVRHFGENYVQELIGKAQELPK--DIKWHFIGGLQTGK 99
Query: 87 VSEIVSLFD---VIETV-SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
++ D +ET+ S +K L + + + L VY+Q+NT E QKSG + T
Sbjct: 100 CKDLAKGIDNLYAVETIDSLKKCKKLDTARLNAEKDPLNVYLQINTSGEEQKSGFSLSDT 159
Query: 143 KDF-----VILCRQKYQLNVEGLMCI----PPAMGNPKPHFYLLS----EIARECKLT-K 188
KD ++ + +L ++GLM I F LS E+ +E L +
Sbjct: 160 KDLKDTVRFLMSDECKKLKLQGLMTIGSFEASTSDEENKDFKALSTVKTELDKEFNLDLE 219
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
LSMGM+ DFE AI G+TSVR+GS IFG RP
Sbjct: 220 LSMGMSNDFEQAIKQGSTSVRVGSSIFGARP 250
>gi|302550792|ref|ZP_07303134.1| alanine racemase domain-containing protein [Streptomyces
viridochromogenes DSM 40736]
gi|302468410|gb|EFL31503.1| alanine racemase domain-containing protein [Streptomyces
viridochromogenes DSM 40736]
Length = 239
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 113/235 (48%), Gaps = 24/235 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I ++ A R +D V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAKVERRIADACTAAGRERDEVTLIVVTKTYPASDVRILSELGVRHVAENRDQDAA 67
Query: 63 KKW-----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K +PL W F+G LQ+NKV +V D +++V R K + LS E ++
Sbjct: 68 PKAAACMDLPL--TW----HFVGQLQTNKVRSVVGYADFVQSVDRSKLVTALSKEAVRTG 121
Query: 118 RFLPVYIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---- 169
R L IQV ++ G+ P + L + L + GLM + P G
Sbjct: 122 RELGCLIQVALDAGESGRGERGGLAPEGIGELAGLVAEAPGLRLAGLMTVAPLTGEYAGR 181
Query: 170 PKPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ F L +++ + + T +S GM+ D E A+A+GAT VR+GS + G RP
Sbjct: 182 EQAAFGRLLDLSTDLRRSHPTATMVSAGMSADLEQAVAAGATHVRVGSAVLGVRP 236
>gi|70733123|ref|YP_262896.1| hypothetical protein PFL_5838 [Pseudomonas fluorescens Pf-5]
gi|68347422|gb|AAY95028.1| conserved hypothetical protein TIGR00044 [Pseudomonas fluorescens
Pf-5]
Length = 232
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 105/226 (46%), Gaps = 10/226 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + + ++I N+ +R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIADNIAQVAERIRNACQAVQRDPHSVQLLAVSKTKPAAALREAHAAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + + FIG +QSNK I FD + +V R K A LS + + L
Sbjct: 63 LGKQQEL-ADLPLSWHFIGPIQSNKTRAIAEHFDWVHSVDRLKIAQRLSEQRPAELPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ IQVN E KSG P +L + GLM IP + + +
Sbjct: 122 ICIQVNVSGEASKSGCAPADLPALASAIGALPRLQLRGLMAIPEPTEDRAAQDAAFAAVQ 181
Query: 182 R---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 RLNNDLRDSLKLPLDTLSMGMSHDLEAAIAQGATWVRIGTALFGAR 227
>gi|325129170|gb|EGC52016.1| hypothetical protein TIGR00044 [Neisseria meningitidis N1568]
Length = 234
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 96/206 (46%), Gaps = 8/206 (3%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R SVSL+AV K S IR + GQ F EN +QE K L D+ IG
Sbjct: 22 AGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQEWYGKTEELADLTDIVWHVIG 81
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK + + T+ R KTA LS + L V I+VN E K G+ P
Sbjct: 82 DVQSNKTKFVAERAHWVHTICRLKTAVRLSGQRPSSMPPLQVCIEVNIAGEAVKHGVAPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE-----CKLTKLSMG 192
+ + + + V GLMC+ A + K F + ++ + K LSMG
Sbjct: 142 EAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQTMRKLLADLNTAGVKADVLSMG 201
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D AI GAT VRIGS IFG+R
Sbjct: 202 MSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|257063615|ref|YP_003143287.1| pyridoxal phosphate enzyme, YggS family [Slackia heliotrinireducens
DSM 20476]
gi|256791268|gb|ACV21938.1| pyridoxal phosphate enzyme, YggS family [Slackia heliotrinireducens
DSM 20476]
Length = 234
Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 114/231 (49%), Gaps = 19/231 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L ++ K ++E++ A RP D+V ++ VSK V + A G F EN+ E
Sbjct: 1 MTLESRYGTIKGRVESACEQAGRPADAVRIIGVSKTVGLDSVAEATKAGIHDFGENRPDE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K E W FIG++QS ++S +V +I ++ +E A+ + ++
Sbjct: 61 LVRKHDAFPDERW----HFIGNIQSRQLSNVVGRAYLIHSLYQESHAAKIDRLAAEKGIV 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP--AMGNPKPHFYLL 177
V I+VN G E K G+ P++ K+ V C + V+GLM + P + F +L
Sbjct: 117 QDVLIEVNDG-ETNKQGVDPDKVKEMVEFCEGLEHVRVKGLMIMAPIGSAEEASKTFAML 175
Query: 178 SEI-----------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ + ++ +L +LSMGM+ D+ AI GAT VRIG IF +
Sbjct: 176 ARVRDEVVESFSQQGKDVQLGELSMGMSDDYLEAIPLGATMVRIGRAIFSD 226
>gi|33151535|ref|NP_872888.1| K+ uptake protein [Haemophilus ducreyi 35000HP]
gi|33147755|gb|AAP95277.1| K+ uptake protein [Haemophilus ducreyi 35000HP]
Length = 234
Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 105/209 (50%), Gaps = 19/209 (9%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-------RKEWDVQLR 77
+++V L+AVSK + I A++ GQ F EN +QEA +K R EW
Sbjct: 23 RENVRLLAVSKTKSIEAIEAAIAAGQTAFGENYVQEAIEKISYFNQQNKSKRLEW----H 78
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
FIG LQSNK + FD ++T+ R K A L+L+ L V IQ+N E K+GI
Sbjct: 79 FIGPLQSNKTRLVAENFDWLQTLDRLKIAERLNLQRPADLAPLNVLIQINISDEASKAGI 138
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIP-PA--MGNPKPHFYLLSEI-----ARECKLTKL 189
P Q +F L + GLM IP PA + K F + ++ A ++ L
Sbjct: 139 TPQQMMNFAEAINALPHLCLRGLMAIPKPAVDIAQQKAVFQQMQQLFDCLKAEFAQVDTL 198
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMGM+ D AI G+T VRIG+ IFG R
Sbjct: 199 SMGMSDDMLSAIECGSTMVRIGTAIFGVR 227
>gi|160933112|ref|ZP_02080501.1| hypothetical protein CLOLEP_01955 [Clostridium leptum DSM 753]
gi|156868186|gb|EDO61558.1| hypothetical protein CLOLEP_01955 [Clostridium leptum DSM 753]
Length = 252
Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 117/230 (50%), Gaps = 29/230 (12%)
Query: 10 FKQKIENSAILAK---RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+++ EN A AK R + ++L+A +K V ++ I +S G ENK+QE K+
Sbjct: 26 YREIRENIAAAAKASGRKPEDITLLAATKTVPAEVINYGISLGIDYLGENKVQEFLSKY- 84
Query: 67 PLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP-- 121
E+D L+FIG LQ+NKV +IV ++I++V K L+ E+ K S+ L
Sbjct: 85 ---DEYDKKRCHLQFIGHLQTNKVKQIVGKVELIQSVDSVK----LAREIAKCSQRLGIV 137
Query: 122 --VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP-AMGNPKPHFYLLS 178
V ++VN G E KSG+ P + K + Q + V+GLM IPP N + Y +
Sbjct: 138 TNVLVEVNIGGEENKSGVKPEEAKALLREISQIQGILVKGLMAIPPICEKNSEIRRYFAA 197
Query: 179 ----------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E + LSMGM+ D+ AI GAT VR+GS +FG R
Sbjct: 198 MRKLFIDIRGENIDNITMDILSMGMSSDYMEAIEEGATMVRVGSSLFGAR 247
>gi|91786307|ref|YP_547259.1| hypothetical protein Bpro_0397 [Polaromonas sp. JS666]
gi|91695532|gb|ABE42361.1| Protein of unknown function UPF0001 [Polaromonas sp. JS666]
Length = 238
Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 110/239 (46%), Gaps = 33/239 (13%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
LQ+ + +I + + A R SV L+AVSK + + A+S GQ F EN + E +K
Sbjct: 7 NLQLVRDRITTACVAAGRDPASVRLLAVSKTFGADAVIDAMSDGQRAFGENYVAEGVEKI 66
Query: 66 IPLRKEWD---------VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ LR W ++ IG +QSNK + FD +++V R KTA LS +
Sbjct: 67 LALRA-WQAAQAGAPAVLEWHCIGPVQSNKTRLVAEHFDWVQSVDRLKTAQRLSEQRPPH 125
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L + +QVN KSG P + Q +L + GLM I P+P
Sbjct: 126 LPPLQICLQVNVDGGANKSGAAPEEALALAQEIAQLPRLTLRGLMAI------PEPAIDF 179
Query: 177 LSEIARECK-----------------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ A + + LSMGMT D E AI SG+T VR+G+ IFG+R
Sbjct: 180 VAACAVHARTRAIFDQINAAGVLPAPMDTLSMGMTADLEAAIHSGSTMVRVGTAIFGKR 238
>gi|227112383|ref|ZP_03826039.1| putative alanine racemase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 237
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 108/228 (47%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ +Q+I +A+ R + ++L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDIRQQIAAAAVHCARAPEEITLLAVSKTKPVSAIEEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEW-DVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K +K D L FIG LQSNK + FD TV R + A LS +
Sbjct: 63 VEKIHYFQKNHPDTPLAWHFIGPLQSNKSRLVAENFDWFHTVDRLRIAQRLSEQRPTTLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V +Q+N E KSGIM + + L + GLM IP + + +
Sbjct: 123 PLNVLLQINISSEPSKSGIMVAELAELAASVAALPNLRLRGLMAIPAPETDYEKQLAVFK 182
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ A + LSMGMT D AI +G+T VRIG+ IFG R
Sbjct: 183 QMAVLLQTLSANYPHIDTLSMGMTDDMRAAITAGSTLVRIGTAIFGAR 230
>gi|78189315|ref|YP_379653.1| hypothetical protein Cag_1350 [Chlorobium chlorochromatii CaD3]
gi|78171514|gb|ABB28610.1| Protein of unknown function UPF0001 [Chlorobium chlorochromatii
CaD3]
Length = 229
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 108/212 (50%), Gaps = 18/212 (8%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFI 79
A R +SV L+AVSK ++ +R A GQ+ F E+ +QE +K+ + +Q FI
Sbjct: 22 AGRKPESVRLIAVSKTKSAELVREAFDAGQLEFGESYMQEFLEKYESRALQGCPIQWHFI 81
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G LQSNKV +V +I + + TA LS ++Q+ + ++VNT E K G+ P
Sbjct: 82 GHLQSNKVRSLVGKVSLIHGIDKLSTAEELSKRAVQQNLTVDYLLEVNTSGEASKYGMAP 141
Query: 140 N----QTKDFVILCRQKYQLNVEGLMCIPP-AMGNPKPHFYLLSEIARECK--------L 186
+ + F L + + GLM I + F L E+ + + +
Sbjct: 142 HTVLSEASAFFALP----NVRLRGLMTIATYEREAARREFQELRELLEQLQAIAPDPTLV 197
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
T+LSMGM+ DFE AI GAT +R+GS IFG R
Sbjct: 198 TELSMGMSGDFEEAIQEGATMIRVGSAIFGWR 229
>gi|291528980|emb|CBK94566.1| pyridoxal phosphate enzyme, YggS family [Eubacterium rectale
M104/1]
Length = 232
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 108/228 (47%), Gaps = 13/228 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L +Q I+ + A R V+L+AVSK + + G F ENK+QE
Sbjct: 2 LKDNLHQVQQNIKAACDRAHRSYSDVTLIAVSKTKPVEMLSEIYDEGIREFGENKVQEMC 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + K D+ IG LQ+NKV IV +I +V A + + IK +
Sbjct: 62 EKMEVMPK--DIHWHMIGHLQTNKVKYIVGKTSLIHSVDSLHLAKEIQKQAIKHDCSCDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN E K G ++ V + ++++GLM I P + +P+ + +I +
Sbjct: 120 LVEVNIAGETSKFGTSRDEAISLVEEIAKLDHIHIKGLMTIAPFVDDPEDNRQYFRDIKQ 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ LSMGMT D+ +AI GAT VR+G+GIFGER
Sbjct: 180 LSVDIAQKNIDNVSMNVLSMGMTGDYTVAIEEGATMVRVGTGIFGERD 227
>gi|206579525|ref|YP_002236597.1| alanine racemase family [Klebsiella pneumoniae 342]
gi|206568583|gb|ACI10359.1| alanine racemase family [Klebsiella pneumoniae 342]
Length = 233
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 107/227 (47%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISGAAARCGRAPEEVTLLAVSKTKPASAIEEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K ++ +Q FIG LQSNK + FD TV R K A+ L+ +
Sbjct: 63 VEKINHFQQAGVSGLQWHFIGPLQSNKSRLVAEHFDWCHTVDRLKIATRLNEQRPAHLPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + L + GLM IP F + +
Sbjct: 123 LKVLIQINISDEQSKSGIPLEALDGLAAEIAELPHLELRGLMAIPAPESEYVRQFAVAQQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFARLKTRYPTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|145631538|ref|ZP_01787306.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
R3021]
gi|144982883|gb|EDJ90400.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
R3021]
Length = 252
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 108/226 (47%), Gaps = 11/226 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEKNRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYL 176
L V IQ+N E KSGI P + L + GLM IP + + F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIAEQETVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+S++ + K + LSMGMT D AI G+T VRIG+ F
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGNCDF 226
>gi|261365682|ref|ZP_05978565.1| pyridoxal phosphate enzyme, YggS family [Neisseria mucosa ATCC
25996]
gi|288565770|gb|EFC87330.1| pyridoxal phosphate enzyme, YggS family [Neisseria mucosa ATCC
25996]
Length = 231
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 96/199 (48%), Gaps = 8/199 (4%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V L+AVSK S IR + GQ F EN +QE +K L D+ IG +QSNK
Sbjct: 29 VGLIAVSKTFPSDDIREVYAAGQRDFGENYIQEWYEKTETLADLPDIVWHVIGDVQSNKT 88
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
+ + T+ R KTA LS + + L V I+VN E K G+ P++ +
Sbjct: 89 KFVAERAHWVHTIGRLKTARRLSEQRPSEMPPLQVCIEVNIAGEEAKHGVAPDEAVALGV 148
Query: 148 LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI-----ARECKLTKLSMGMTRDFEL 199
+ + V GLMC+ A + + F + ++ A LSMGM+ D +
Sbjct: 149 EVAKLPNVVVRGLMCVAKAGSSEAELRHQFQAMQQLLADLNAAGVDADVLSMGMSDDMPV 208
Query: 200 AIASGATSVRIGSGIFGER 218
A+A GAT VRIGS IFG R
Sbjct: 209 AVACGATHVRIGSAIFGRR 227
>gi|261419328|ref|YP_003253010.1| alanine racemase domain protein [Geobacillus sp. Y412MC61]
gi|297530702|ref|YP_003671977.1| alanine racemase domain protein [Geobacillus sp. C56-T3]
gi|319766144|ref|YP_004131645.1| alanine racemase domain protein [Geobacillus sp. Y412MC52]
gi|261375785|gb|ACX78528.1| alanine racemase domain protein [Geobacillus sp. Y412MC61]
gi|297253954|gb|ADI27400.1| alanine racemase domain protein [Geobacillus sp. C56-T3]
gi|317111010|gb|ADU93502.1| alanine racemase domain protein [Geobacillus sp. Y412MC52]
Length = 224
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 113/230 (49%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L +++IE + R V +VAV+K VD+K+ L G EN+ +
Sbjct: 1 MTVRDNLAAIRREIEAACARVGRDPAGVRIVAVTKYVDAKRALEVLDAGIADLGENRSDQ 60
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS- 117
K I + W FIG+LQS KV +I+ D I ++ R L+ E+ K++
Sbjct: 61 LIEKHARIGNQATW----HFIGTLQSRKVKDIIDKVDYIHSLDRLS----LAKEIEKRAV 112
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK------ 171
R + ++QVN E K G+ P +T F+ R ++ V GLM + P G+
Sbjct: 113 RPVKCFVQVNVSGEATKHGLAPEETIPFIEQLRAFSRIEVVGLMTMAPHTGDEAILRACF 172
Query: 172 PHFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+L E + + T+LSMGM+ D+ +AI GAT VRIGS + G
Sbjct: 173 RQLRMLKERVQALGMAHAPCTELSMGMSNDYTIAIEEGATFVRIGSALVG 222
>gi|289523459|ref|ZP_06440313.1| pyridoxal phosphate enzyme, YggS family [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503151|gb|EFD24315.1| pyridoxal phosphate enzyme, YggS family [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 234
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 112/227 (49%), Gaps = 19/227 (8%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVI-FAENKLQEAKKKW 65
L+ K++I +A R D + L+AV+K + + A G + EN++QEAK K
Sbjct: 10 LESVKERIAKTAESVGRMPDQIKLIAVTKNQPLEAMLQASRSGLIDGIGENRVQEAKDK- 68
Query: 66 IPLRKEWDVQLRF----IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++ W L+ IG LQ NK + LFD+I+++ A++L + + +
Sbjct: 69 ---KERWPSDLKLPWHMIGHLQRNKAKLAIQLFDIIQSIDNMDLAAVLEKRLAALKKNME 125
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFV-ILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
V I+VN EI K G+ P + R L + GLM I P + + + F LL
Sbjct: 126 VLIEVNISGEISKYGVDPKDVSSMAEYILRNCPSLKLVGLMGIGPLVKDREKIISSFVLL 185
Query: 178 SEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +L +LSMGM+ DFELAI G+T VRIG IFG R
Sbjct: 186 RRLKEKTEKDIGLQLHELSMGMSDDFELAIKEGSTMVRIGRAIFGPR 232
>gi|253990754|ref|YP_003042110.1| hypothetical protein PAU_03280 [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|211639085|emb|CAR67697.1| Hypothetical protein yggS [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782204|emb|CAQ85368.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 231
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/229 (32%), Positives = 106/229 (46%), Gaps = 16/229 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + I +A +R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 NIEQNLQDVRTHIVIAAQKCERAPEEITLLAVSKTKPVEDIEKAIIAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K D+ FIG LQSNK + FD T+ R K A LS + + + L
Sbjct: 63 VEKITHFANRDDLIWHFIGPLQSNKSRLVAENFDWCHTIDRLKIAQRLSEQRPEGMKPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ IQ+N E KSGI ++ + + + GLM IP P+P + +
Sbjct: 123 ILIQINISDEQSKSGIQLDELPMLATEVNKLPHVKLRGLMAIPA----PEPDYERQLMVF 178
Query: 182 RECK------------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R K + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 179 RRMKQVFLNLKTKYPQIDTLSMGMTDDMAAAIHCGSTLVRIGTAIFGAR 227
>gi|153871106|ref|ZP_02000360.1| conserved hypothetical protein [Beggiatoa sp. PS]
gi|152072430|gb|EDN69642.1| conserved hypothetical protein [Beggiatoa sp. PS]
Length = 228
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 108/230 (46%), Gaps = 21/230 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q+I + R + L+AVSK I A+ Q F EN LQ+A
Sbjct: 2 ISETLTTVRQRIAKACQQFARSPSDIQLLAVSKTRPVADIVTAIKNDQFRFGENYLQDAL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K I + + ++ FIG LQSNK I FD +++V + K A L+ + Q L V
Sbjct: 62 PK-IEALQAYPLEWHFIGPLQSNKTRLIAEHFDWVQSVDKLKYAQRLNAQRPAQLLPLNV 120
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH--------- 173
IQVN E+QK+G+ + +L + GLM + P PH
Sbjct: 121 CIQVNISEEVQKAGVGLADLLPLAQAIAELPRLRLRGLMAL------PAPHQVFEQQRMP 174
Query: 174 FYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F + ++ + L LSMGMT D AIA G+T VRIG+GIFG+R
Sbjct: 175 FRAIYTAYQQLQTSGLVLDTLSMGMTNDMMAAIAEGSTLVRIGTGIFGKR 224
>gi|283788527|ref|YP_003368392.1| amino acid racemase [Citrobacter rodentium ICC168]
gi|282951981|emb|CBG91708.1| putative amino acid racemase [Citrobacter rodentium ICC168]
Length = 234
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 112/231 (48%), Gaps = 18/231 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHSLAQIRDKISAAASHCGRAPEEVTLLAVSKTKPASAIEEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEWD--VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K +++ +Q FIG LQSNK + FD T+ R + A+ LS + Q
Sbjct: 63 VEKIRHFQEKGSEGLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIAARLSEQRPAQLPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + L + GLM IP P+ + E
Sbjct: 123 LNVLIQINISDENSKSGIALAELEQLAEEVAALPNLRLRGLMAIPA----PESDYVRQFE 178
Query: 180 IARECKLT------------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR+ + LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 179 VARQMAVAFAGLKTRYPGVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGAR 229
>gi|225012866|ref|ZP_03703299.1| alanine racemase domain protein [Flavobacteria bacterium MS024-2A]
gi|225002988|gb|EEG40965.1| alanine racemase domain protein [Flavobacteria bacterium MS024-2A]
Length = 216
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 100/201 (49%), Gaps = 10/201 (4%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+SVSL+AVSK + A GQ F ENK+QE +KW L K D+ IG +Q+N
Sbjct: 16 ESVSLIAVSKTKPQSDLLEAYQAGQRAFGENKIQEMAEKWEKLPK--DIDWHMIGHVQTN 73
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV + +I V K + + +K +R + IQ+ E K G+ P +
Sbjct: 74 KVKYMAPFVHLIHAVDSLKLLKEIQKQALKNNRTIGCLIQIRIAEEETKFGLPPEELPLL 133
Query: 146 VILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIAREC-----KLTKLSMGMTRDF 197
++ + + GLM + N + F L+ + +E K T LSMGM+ D+
Sbjct: 134 LLAAEDLPNVTIRGLMGMASFTANLNQVRKEFKHLASLYKETIKVYPKNTILSMGMSGDY 193
Query: 198 ELAIASGATSVRIGSGIFGER 218
E+AI GAT +R+GS IFGER
Sbjct: 194 EIAIEEGATMIRVGSKIFGER 214
>gi|242010392|ref|XP_002425952.1| predicted protein [Pediculus humanus corporis]
gi|212509935|gb|EEB13214.1| predicted protein [Pediculus humanus corporis]
Length = 228
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 112/210 (53%), Gaps = 36/210 (17%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
LVAVSK + I A +CGQ F EN +QE W FIG LQ NKV++
Sbjct: 33 LVAVSKTKPIESIIEAYNCGQRHFGENYVQEI----------W----HFIGHLQRNKVNK 78
Query: 90 IVSLFDV--IETVSREKTASLLSLEMIK---QSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
++S+ ++ +ETV EK A L+ K +++ + ++IQVNT E KSG PN+T +
Sbjct: 79 LLSIPNLFAVETVDSEKLADALNNYFSKTEDENKKINIFIQVNTSGEESKSGCKPNETCN 138
Query: 145 FV--ILCRQKYQLNVEGLMCIP------PAMGNPKPHFYLL----SEIARECKLT----K 188
V I+ K+ LNV GLM I + P F L I + +T +
Sbjct: 139 LVKHIIDNCKH-LNVMGLMTIGKYDNYLTSQDKIDPDFQCLIDCKDNICKNLNVTFDQFE 197
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ DFE AI +G+++VR+GS IFG R
Sbjct: 198 LSMGMSADFERAILAGSSNVRVGSLIFGGR 227
>gi|307297898|ref|ZP_07577702.1| alanine racemase domain protein [Thermotogales bacterium
mesG1.Ag.4.2]
gi|306915984|gb|EFN46367.1| alanine racemase domain protein [Thermotogales bacterium
mesG1.Ag.4.2]
Length = 217
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 107/217 (49%), Gaps = 17/217 (7%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW--IPLRKEW 72
EN L D V++VA SK + +I L G EN +QEA+ K+ I + W
Sbjct: 4 ENVKRLRSEIPDYVTIVAASKTRTASEILEILESGLKDVGENYVQEAEGKFEAIGNKARW 63
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
IG LQ NKV + +FD+I+TV K A + S+ +PV ++VN+G E
Sbjct: 64 HC----IGHLQRNKVKRAIEIFDIIQTVDSFKLAEEIDKRCSYLSKKMPVMVEVNSGKEE 119
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF----YLLSEIARE-- 183
K+G++P + + V GLM + P +P +P L EI++E
Sbjct: 120 NKAGVLPENVLQLITEISPLKNIAVVGLMTMGPFTEDPEEIRPSLRLTRRLFEEISKEKI 179
Query: 184 --CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGM+ + +AI G+ VR+G+ IFGER
Sbjct: 180 EGVEMKYLSMGMSNSYRVAIEEGSNMVRLGTIIFGER 216
>gi|319901735|ref|YP_004161463.1| alanine racemase domain protein [Bacteroides helcogenes P 36-108]
gi|319416766|gb|ADV43877.1| alanine racemase domain protein [Bacteroides helcogenes P 36-108]
Length = 222
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
IL++ P + V LVAVSK ++ I A GQ +F E+K+QE K+ L K D++ F
Sbjct: 9 ILSELP-EGVQLVAVSKFHPNEAIEEAYRAGQRVFGESKVQEMTAKYESLPK--DIEWHF 65
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQSNK+ IV +I + K + ++ + K +R + +Q++ E K G
Sbjct: 66 IGHLQSNKIKYIVPYVALIHGIDSYKLLAEVNKQAAKMNRTVDCLLQLHIAREETKFGFS 125
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNP---KPHFYLLSEIARECKLT------ 187
++ ++ + K N+ GLM + N K F L E K T
Sbjct: 126 FDECREMLSSGGWKKLGNIRICGLMGMATNTDNAEQIKAEFCSLESFFHEVKSTWFPDEG 185
Query: 188 ---KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+LSMGM+ D+ AIA+G+T +R+GS IFGER Q
Sbjct: 186 SFRELSMGMSHDYHEAIAAGSTLIRVGSKIFGERNYQ 222
>gi|146418812|ref|XP_001485371.1| hypothetical protein PGUG_03100 [Meyerozyma guilliermondii ATCC
6260]
Length = 256
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/211 (36%), Positives = 108/211 (51%), Gaps = 20/211 (9%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+V LVAVSK+ + I + G F EN +QE K L K D++ FIG LQ+ K
Sbjct: 42 NVRLVAVSKLKPASDILALYNHGVRHFGENYVQELIGKAQELPK--DIKWHFIGGLQTGK 99
Query: 87 VSEIVSLFD---VIETV-SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
++ D +ET+ S +K L + + + L VY+Q+NT E QKSG T
Sbjct: 100 CKDLAKGIDNLYAVETIDSLKKCKKLDTARLNAEKDPLNVYLQINTSGEEQKSGFSLLDT 159
Query: 143 KDF-----VILCRQKYQLNVEGLMCI----PPAMGNPKPHFYLLS----EIARECKLT-K 188
KD ++ + +L ++GLM I + F LS E+ +E L +
Sbjct: 160 KDLKDTVRFLMSDECKKLKLQGLMTIGSFEASTLDEENKDFKALSTVKTELDKEFNLDLE 219
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
LSMGM+ DFE AI G+TSVR+GS IFG RP
Sbjct: 220 LSMGMSNDFEQAIKQGSTSVRVGSSIFGARP 250
>gi|282889722|ref|ZP_06298261.1| hypothetical protein pah_c004o075 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500296|gb|EFB42576.1| hypothetical protein pah_c004o075 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 225
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 113/228 (49%), Gaps = 26/228 (11%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N L++ K +IE A R D +SL+AVSK + I+ G F E+++QEA +K
Sbjct: 7 NYLKI-KVRIEEYARKYGRASDEISLIAVSKTYPVESIQTVYEAGCRNFGESRVQEALQK 65
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
R D+Q IGSLQ NKVS+IV F +I +V + A +S +K + +
Sbjct: 66 --QPRLPSDIQWHLIGSLQLNKVSKIVGKFTLIHSVDSFELAKKISETSLKLGVQTSILL 123
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQ-------LNVEGLMCIPP------AMGNPK 171
QVNT E+ K G C++ Y+ + VEGLM + P A+ N
Sbjct: 124 QVNTSGELTKHGWSGEA-------CQKDYEHILSLSGICVEGLMTMAPFSNDEQAVRNCF 176
Query: 172 PHFYLLSE---IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
LL E I+ L LSMGM+ DF AIA GAT +RIG+ IF
Sbjct: 177 QKLRLLKEQLSISSGRLLPHLSMGMSNDFGWAIAEGATLLRIGTAIFA 224
>gi|152971903|ref|YP_001337012.1| PLP-binding domain-containing protein [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238896482|ref|YP_002921220.1| putative enzyme with PLP-binding domain [Klebsiella pneumoniae
NTUH-K2044]
gi|262042603|ref|ZP_06015759.1| YggS family pyridoxal phosphate enzyme [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|329998591|ref|ZP_08303175.1| pyridoxal phosphate enzyme, YggS family [Klebsiella sp. MS 92-3]
gi|150956752|gb|ABR78782.1| putative enzyme with PLP-binding domain [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238548802|dbj|BAH65153.1| putative enzyme with PLP-binding domain [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|259040037|gb|EEW41152.1| YggS family pyridoxal phosphate enzyme [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|328538610|gb|EGF64710.1| pyridoxal phosphate enzyme, YggS family [Klebsiella sp. MS 92-3]
Length = 233
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 107/227 (47%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISGAAARCGRAPEEVTLLAVSKTKPASAIEEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K ++ +Q FIG LQSNK + FD TV R K A+ L+ +
Sbjct: 63 VEKINHFQQAGVSGLQWHFIGPLQSNKSRLVAEHFDWCHTVDRLKIATRLNEQRPAHLPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + L + GLM IP F + +
Sbjct: 123 LKVLIQINISDEQSKSGIPLEALDGLAAEIAELPHLELRGLMAIPAPESEYVRQFAVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFARLKTRYPTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 229
>gi|325265726|ref|ZP_08132415.1| YggS family pyridoxal phosphate enzyme [Kingella denitrificans ATCC
33394]
gi|324982857|gb|EGC18480.1| YggS family pyridoxal phosphate enzyme [Kingella denitrificans ATCC
33394]
Length = 235
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 103/228 (45%), Gaps = 12/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL +Q+I +A+ A+R S+ L+AVSK + IR GQ F EN +QE
Sbjct: 6 MSLLPAYTEVRQRIVQAALNARRDPGSLQLIAVSKTFPADDIRELYGLGQRDFGENYIQE 65
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L D+ IG +QSNK + + T+ K A L+ + + L
Sbjct: 66 WWQKTEQLADCPDICWHIIGQVQSNKSRYVAERAHWLHTLDNVKLARRLNNQRPEHLPPL 125
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---------- 170
V I++N + K GI D +L + GLMC+ A +
Sbjct: 126 QVCIEINIAQDANKHGIAAEALDDLAREVAGLPRLKLRGLMCVAQADADETVLRQQFTAM 185
Query: 171 KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ H L IA LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 186 RQHLARLQTIAPHAD--TLSMGMSGDLECAIACGATMVRIGTALFGRR 231
>gi|300723967|ref|YP_003713281.1| hypothetical protein XNC1_3109 [Xenorhabdus nematophila ATCC 19061]
gi|297630498|emb|CBJ91163.1| putative enzyme with PLP-binding domain [Xenorhabdus nematophila
ATCC 19061]
Length = 231
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 96/204 (47%), Gaps = 8/204 (3%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R + ++L+AVSK I A++ GQ F EN +QE +K D+ FIG L
Sbjct: 24 RIPEEITLLAVSKTKPVDDIAKAIASGQREFGENYVQEGVEKIQHFDNHDDLVWHFIGPL 83
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
QSNK + FD T+ R K A L+ + + L V IQ+N E KSGI+ +
Sbjct: 84 QSNKSRLVAENFDWCHTIDRLKIAERLNEQRPENMAPLNVLIQINISGEESKSGILLEEL 143
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE--------CKLTKLSMGMT 194
D L + GLM IP + + + ++ + + LSMGMT
Sbjct: 144 IDLAAKINSLPNLVLRGLMAIPAPENDFERQLAVFHQMEQAFIKLKRLYSPVDTLSMGMT 203
Query: 195 RDFELAIASGATSVRIGSGIFGER 218
D E AI G+T VRIG+ IFG R
Sbjct: 204 DDMEAAITCGSTLVRIGTAIFGAR 227
>gi|84394065|ref|ZP_00992801.1| Predicted enzyme with a TIM-barrel fold [Vibrio splendidus 12B01]
gi|84375307|gb|EAP92218.1| Predicted enzyme with a TIM-barrel fold [Vibrio splendidus 12B01]
Length = 238
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 98/207 (47%), Gaps = 11/207 (5%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK---KKWIPLRKEWDVQLRFI 79
R +SV L+AVSK I A GQV F EN +QE K + +++ FI
Sbjct: 24 RAPESVQLLAVSKTKPIDAILEAALGGQVAFGENYVQEGVDKVKHFSEQHSNLNLEWHFI 83
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G +QSNK I F + +V R+K A LS + + L V IQVNT E KSG
Sbjct: 84 GPIQSNKTRPIAESFQWVHSVERDKIAQRLSDQRPSELPPLQVLIQVNTSGEESKSGTSE 143
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSM 191
L L + GLM IP + + + S++ A+ + LSM
Sbjct: 144 ETVFALAELISLLPNLTLRGLMSIPANVSDYQSQLNAFSQLAELKDKLAAKYPNIDTLSM 203
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D + A+ +G+T VRIG+ IFG R
Sbjct: 204 GMSGDMDAAVEAGSTMVRIGTAIFGAR 230
>gi|238763261|ref|ZP_04624226.1| alanine racemase [Yersinia kristensenii ATCC 33638]
gi|238698534|gb|EEP91286.1| alanine racemase [Yersinia kristensenii ATCC 33638]
Length = 231
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 103/224 (45%), Gaps = 11/224 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK- 64
LQ + +I +A R + V+L+AVSK I A++ GQ F EN +QE K
Sbjct: 7 NLQDVRAQIATAARNCGRSPEEVTLLAVSKTKPVSAIEEAIAAGQYAFGENYVQEGVDKI 66
Query: 65 --WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ ++ FIG LQSNK + F TV R K A LS + + L +
Sbjct: 67 HYFADNAPSAHLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPPEMPALNI 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-- 180
IQVN E KSGI + L++ GLM IP + + + ++
Sbjct: 127 LIQVNISDEQSKSGITLAELPALAASINALPNLHLRGLMAIPAPETDYQRQLAVFEQMNQ 186
Query: 181 ------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A ++ LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 187 AFLTLKASYPQMDTLSMGMTDDMAAAIAAGSTLVRIGTAIFGSR 230
>gi|325282518|ref|YP_004255059.1| hypothetical protein Deipr_0269 [Deinococcus proteolyticus MRP]
gi|324314327|gb|ADY25442.1| protein of unknown function UPF0001 [Deinococcus proteolyticus MRP]
Length = 217
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 113/219 (51%), Gaps = 24/219 (10%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKK---WIPL 68
+I + A R + S LVAV+K ++IR L+ G EN+ QE + K W
Sbjct: 9 RIRTAEARAGRLQGSARLVAVTKGHSLEEIRRKVLAHGNFPLGENRGQEVRDKVAEWTET 68
Query: 69 RK-----EWDVQLRFIGSLQSNKVS--EIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ EW +IG LQSNKV E V+L IE V++ +T + + K R
Sbjct: 69 AQGAPQPEW----HYIGPLQSNKVKYLERVALIHAIEDVAQAETVARYAE---KWGRAPG 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
V +Q++ G E QK GI P + + R L+V GLM + P G P+ F + +
Sbjct: 122 VLLQLHNG-EAQKHGIAPAELSGVLAGVRAT-GLDVRGLMVMAP-YGQPEEARRIFRVAA 178
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ A + L++LSMGM+ DFE A+ G+T VR+GS +FGE
Sbjct: 179 QRAHDLGLSELSMGMSGDFEAAVEEGSTLVRVGSALFGE 217
>gi|213965663|ref|ZP_03393856.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium amycolatum
SK46]
gi|213951614|gb|EEB63003.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium amycolatum
SK46]
Length = 240
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 90/183 (49%), Gaps = 17/183 (9%)
Query: 55 ENKLQEAKKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
EN++QEA K R + + IG LQ+NK +VS D + + R K A L
Sbjct: 58 ENRVQEAVAKTEAFRDAFGDKAPHMAIIGPLQTNKAGHLVSCADEFQALDRPKVAGALQR 117
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ---LNVEGLMCIPPAMG 168
+ R L V IQVN E QKSG+ P+ +FV + + L + G M I A
Sbjct: 118 RLADSERTLDVLIQVNASREPQKSGLAPSHAAEFVRMFGPDGEYPNLRLRGFMTI-AAQN 176
Query: 169 NP--KPHFY--------LLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+P + F LL ++ L +LSMGM+ D+ AIA GAT+VR+G IFGER
Sbjct: 177 DPNVRETFAELRELRDSLLGDLPEGVSLDELSMGMSGDYHEAIAEGATTVRVGRAIFGER 236
Query: 219 PCQ 221
Q
Sbjct: 237 SYQ 239
>gi|123443627|ref|YP_001007599.1| hypothetical protein YE3433 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122090588|emb|CAL13457.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 231
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 104/224 (46%), Gaps = 11/224 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK- 64
LQ + KI +A R + V+L+AVSK I A++ GQ F EN +QE K
Sbjct: 7 NLQDVRAKIAAAARNCGRSPEEVTLLAVSKTKPVSAIEEAIAAGQYAFGENYVQEGVDKI 66
Query: 65 --WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ ++ FIG LQSNK + F TV R K A LS + + L +
Sbjct: 67 HYFAESAHASQLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPPEMPALNI 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
IQVN E KSGI + + L++ GLM IP + + + ++ +
Sbjct: 127 LIQVNISDEQSKSGIALAELPALAASISELPHLHLRGLMAIPAPETDYQRQLAVFEQMNQ 186
Query: 183 EC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 187 AFLTLKTSYPQMDTLSMGMTDDMAAAIAAGSTLVRIGTAIFGSR 230
>gi|195341465|ref|XP_002037330.1| GM12173 [Drosophila sechellia]
gi|194131446|gb|EDW53489.1| GM12173 [Drosophila sechellia]
Length = 254
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 119/230 (51%), Gaps = 34/230 (14%)
Query: 19 ILAKRPKDSVS----LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP---LRKE 71
+L +RPK+ + LVAVSK ++ + A GQ F EN +QE ++K L K
Sbjct: 25 VLVQRPKEVQAARPLLVAVSKTKPAEAVIEAYEDGQRDFGENYVQELEEKSRHPDILAKC 84
Query: 72 WDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIKQ----SRFLPVYIQ 125
D++ FIG +QSNK+++I+S+ +I+TV EK A+ L K+ L V IQ
Sbjct: 85 PDIRWHFIGHMQSNKINKILSVPNLHMIQTVDSEKLATKLDAAWSKRQPTPEEPLQVLIQ 144
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCR----QKYQLNVEGLMCIPPAMG-----NPKPHFYL 176
+NT E KSGI + KD L + LN+ G+M I A G P P F
Sbjct: 145 INTSGEDVKSGI---EAKDAPALYQYIKSNLKHLNLMGIMTIG-AFGFDYASGPNPDFVS 200
Query: 177 LSEIARE-CKLTKL-------SMGMTRDFELAIASGATSVRIGSGIFGER 218
L ++ R C+ L SMGM+ DF+ AI G+T VR+GS IFG R
Sbjct: 201 LMQVHRTICEAHSLAPDSVLVSMGMSHDFDKAIEMGSTVVRVGSSIFGHR 250
>gi|332878474|ref|ZP_08446195.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332683569|gb|EGJ56445.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 223
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 99/206 (48%), Gaps = 16/206 (7%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V LVAVSK I A + GQ +F E+ +QE ++K+ L K D++ FIG LQ+NK
Sbjct: 18 GVRLVAVSKYHPESHIEEAYAAGQRVFGESHVQELRRKYDNLPK--DIEWHFIGHLQTNK 75
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V I +I V K + + K R +P +Q++ E K G P++ V
Sbjct: 76 VKYIAPYVAMIHAVDSMKLLLEIDKQGEKSGRVIPCLLQLHVAKEETKFGFTPDECCKLV 135
Query: 147 ILCRQK--YQLNVEGLMCIP---PAMGNPKPHFYLLSEIARECK---------LTKLSMG 192
K + + GLMC+ M + F+L + +E K + S G
Sbjct: 136 ADGEWKKLAHVRIYGLMCMASNTDDMAQVRSEFHLAYALFKELKTGAFANAPYFKECSWG 195
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D+ +AI G+T +R+GS IFGER
Sbjct: 196 MSHDYPIAIEEGSTLIRVGSKIFGER 221
>gi|299144088|ref|ZP_07037168.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus sp. oral
taxon 386 str. F0131]
gi|298518573|gb|EFI42312.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus sp. oral
taxon 386 str. F0131]
Length = 228
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 123/233 (52%), Gaps = 23/233 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + + +IENS ++ + V L+AVSKM +++ A + G F ENK+QE
Sbjct: 1 MSIKDNYEFILTEIENSRKVS-ITGEEVKLIAVSKMRTIDEMKEAYNLGIRDFGENKVQE 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
K+K++ D+ IG+LQ+NKV I +I+++ R+ SLL E+ K++
Sbjct: 60 LKEKFLNFD---DINFHMIGNLQTNKVKYIYDKVTLIQSLDRK---SLLE-EINKRADIK 112
Query: 120 ---LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP------ 170
+ +++N E QK G+ + +F+ C + ++G+M + P +
Sbjct: 113 NIDVDCLVEINIAEESQKGGVPYTEALNFIETCIDYKNIKIKGIMTVAPDTSDKLFLREC 172
Query: 171 -KPHFYLLSEIAR----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K F L +I + E ++ LSMGM+ D+++AI G+ VRIG+ IFG+R
Sbjct: 173 FKKMFILKEKIIKLNYDEVEMKYLSMGMSGDYKIAIEEGSNMVRIGTSIFGKR 225
>gi|158320440|ref|YP_001512947.1| alanine racemase domain-containing protein [Alkaliphilus oremlandii
OhILAs]
gi|158140639|gb|ABW18951.1| alanine racemase domain protein [Alkaliphilus oremlandii OhILAs]
Length = 234
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 113/233 (48%), Gaps = 19/233 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+SL ++ +++I+ +A R + + L+AV+K VD I+ A+ G ENK+QE
Sbjct: 3 LSLEKNIEFVQERIKIAAQKGHRNLEEIQLIAVTKTVDIDVIKQAIELGITHVGENKVQE 62
Query: 61 AKKKWI---PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+K+ P+ K W IG LQ NKV I+ D+I ++ + A + +
Sbjct: 63 LVRKYDIIGPVVK-W----HLIGHLQRNKVKYIIDKVDLIHSLDSYRLAEEIDSRAKEIG 117
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHF 174
R + +QVN E K G+ K + + V GLM + P + N + +F
Sbjct: 118 RTIECLLQVNVSGEETKYGVDKEGAKSLIREVAALGNIKVLGLMTMAPYVENQEEARQYF 177
Query: 175 YLLSEIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +++ E + LSMGM+ DFE+AI GA VR+GS IFGER
Sbjct: 178 KALKDLSIEISAMDLENVHMKYLSMGMSNDFEIAIEEGANLVRVGSLIFGERD 230
>gi|291524839|emb|CBK90426.1| pyridoxal phosphate enzyme, YggS family [Eubacterium rectale DSM
17629]
Length = 232
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 108/228 (47%), Gaps = 13/228 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L +Q I+ + A R V+L+AVSK + + G F ENK+QE
Sbjct: 2 LKDNLHQVQQNIKAACDRAHRNYSDVTLIAVSKTKPVEMLSEIYDEGIREFGENKVQEMC 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + K D+ IG LQ+NKV IV +I +V A + + IK +
Sbjct: 62 EKMEVMPK--DIHWHMIGHLQTNKVKYIVGKTSLIHSVDSLHLAKEIQKQAIKHDCSCDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN E K G ++ V + ++++GLM I P + +P+ + +I +
Sbjct: 120 LVEVNIAGEASKFGTSRDEAISLVEEIAKLDHIHIKGLMTIAPFVDDPEDNRQYFRDIKQ 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ LSMGMT D+ +AI GAT VR+G+GIFGER
Sbjct: 180 LSVDIAQKNIDNVSMNVLSMGMTGDYTVAIEEGATMVRVGTGIFGERD 227
>gi|289676356|ref|ZP_06497246.1| hypothetical protein PsyrpsF_23972 [Pseudomonas syringae pv.
syringae FF5]
Length = 186
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 88/184 (47%), Gaps = 10/184 (5%)
Query: 42 IRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIET 99
+R A + G F EN LQEA K + L D+ L FIG +QSNK I FD + +
Sbjct: 1 MREAYTAGLRDFGENYLQEALGKQLELS---DLPLCWHFIGPIQSNKTRAIAENFDWVHS 57
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
V R K A LS + + L + IQVN E KSG P +L + G
Sbjct: 58 VDRLKIAQRLSEQRPEALEPLNICIQVNVSGEASKSGCTPQDLPALAAAIIALPRLRLRG 117
Query: 160 LMCIPPAMGNPKPH---FYLLSEIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGI 214
LM IP +P F + + + L LSMGM+ D E AIA GAT VRIG+ +
Sbjct: 118 LMAIPEPTDDPAAQDASFAAVRTLQEQLNLPLDTLSMGMSHDLEAAIAQGATWVRIGTAL 177
Query: 215 FGER 218
FG R
Sbjct: 178 FGAR 181
>gi|75909109|ref|YP_323405.1| hypothetical protein Ava_2899 [Anabaena variabilis ATCC 29413]
gi|75702834|gb|ABA22510.1| Protein of unknown function UPF0001 [Anabaena variabilis ATCC
29413]
Length = 222
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 110/205 (53%), Gaps = 15/205 (7%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SV L+AV+K + ++ IR A + G F EN++QEA K L+ D+ FIG LQ+NK
Sbjct: 19 SVRLIAVTKQMPTEVIRAAYAAGVRDFGENRIQEAASKQAQLQDLPDITWHFIGHLQANK 78
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP-VYIQVNTGYEIQKSGI-MPNQTKD 144
+ + F I +V K A L ++ +Q P V +QV + KSG +P D
Sbjct: 79 AKKALEQFQWIHSVDNLKLAQRLD-QLAQQLGVNPQVCLQVKILPDPNKSGWSVPELLAD 137
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKP--HFY-----LLSEIARE----CKLTKLSMGM 193
L + K L ++GLM IPP N H + L +IA + + +LSMGM
Sbjct: 138 LPALNQCKT-LQIQGLMTIPPFGLNDAKILHVFNSTSKLAEDIAEQNWDHIHMEQLSMGM 196
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D++LA+ +GAT VR+G+ +FG+R
Sbjct: 197 SGDYQLAVQAGATMVRLGTILFGQR 221
>gi|282862154|ref|ZP_06271217.1| alanine racemase domain protein [Streptomyces sp. ACTE]
gi|282563179|gb|EFB68718.1| alanine racemase domain protein [Streptomyces sp. ACTE]
Length = 239
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I ++ A R +D V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAEVEDRIASACASAGRGRDEVTLIVVTKTYPASDVRILRELGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K ++ + F+G LQ+NKV +V DV+++V R K + LS +++ R L
Sbjct: 68 PKAAAC-EDLSLTWHFVGQLQTNKVRSVVGYADVVQSVDRVKLVTALSAAAVRRGRDLGC 126
Query: 123 YIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA----MGNPKPHF 174
+QV +G + G+ P+ + L ++GLM + P G + F
Sbjct: 127 LLQVALDAESGERGGRGGVAPDAIGELAAAVEDAPGLRLDGLMTVAPLAGPYAGRQRAAF 186
Query: 175 YLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L E++ + +S GM+ D E A+A+GAT VR+G+ + G+RP
Sbjct: 187 DRLMELSSRLRGDHPAANMVSAGMSGDLEDAVAAGATHVRVGTAVLGDRP 236
>gi|156343716|ref|XP_001621090.1| hypothetical protein NEMVEDRAFT_v1g146073 [Nematostella vectensis]
gi|156206711|gb|EDO28990.1| predicted protein [Nematostella vectensis]
Length = 225
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 107/223 (47%), Gaps = 15/223 (6%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
KL K+ IE I A P D V+LVAVSK K I A + GQ IF ENK+QE K+
Sbjct: 4 KLTTIKENIEE--ITASIPND-VTLVAVSKTKPIKDILEAYNAGQRIFGENKIQEMAAKY 60
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L K D+Q IG LQ NKV + D+I V KT ++ + K +R + +Q
Sbjct: 61 EELPK--DIQWHMIGHLQRNKVKYMAHFVDLIHGVDSLKTLQEINKQASKHNRVIKCLLQ 118
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNP---KPHFYLLSEI 180
E K G+ ++ + K N++ GLM + N K F L
Sbjct: 119 AKIAAEDSKFGLSFTHIEEVLASSEIKEFKNIQVVGLMGMATFTDNQQQLKKEFSSLKTF 178
Query: 181 -----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D++LAI +G+ +R+GS IFG R
Sbjct: 179 FDTLATQYTTLKILSMGMSGDYQLAIKNGSNMIRVGSSIFGAR 221
>gi|159898076|ref|YP_001544323.1| alanine racemase domain-containing protein [Herpetosiphon
aurantiacus ATCC 23779]
gi|159891115|gb|ABX04195.1| alanine racemase domain protein [Herpetosiphon aurantiacus ATCC
23779]
Length = 248
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 119/235 (50%), Gaps = 27/235 (11%)
Query: 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69
+Q+I +A + R SV L+AV+K +I L+ G EN++QEA++K
Sbjct: 15 IQQRISQAAQRSHRDPASVRLIAVTKTHPMLRINAVLAAGIHDLGENRVQEAEEKIALQT 74
Query: 70 KEWDVQLRF--IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF----LPVY 123
E Q R+ IG LQ NK LF +I ++ K A +L+ + +++ LP+
Sbjct: 75 PEALAQTRWHLIGHLQRNKARRAAKLFSLIHSIDSVKLAEILNRIVDEEASVIPQPLPIL 134
Query: 124 IQVNT-------GYEIQKSGIMPNQTKDFVILCRQKYQL---NVEGLMCIPP----AMGN 169
+QVN G+E+ G+ + DFV R +L ++ GLM I P G
Sbjct: 135 LQVNVSGERSKDGFEL-AGGVHNSAWLDFVGEVRAIAELPLIDLRGLMTIAPYSDDVEGV 193
Query: 170 PKPHFYLLSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+P F L E+ + + L++LSMGM+ DFE+AI G+T VR+G+ +FG R
Sbjct: 194 VRPCFRALREVRDQLEQRLDRPLSELSMGMSGDFEVAIEEGSTIVRVGTALFGAR 248
>gi|313679728|ref|YP_004057467.1| alanine racemase domain protein [Oceanithermus profundus DSM 14977]
gi|313152443|gb|ADR36294.1| alanine racemase domain protein [Oceanithermus profundus DSM 14977]
Length = 213
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 102/196 (52%), Gaps = 14/196 (7%)
Query: 27 SVSLVAVSKMVDSKKI-RVALSCGQVIFAENKLQEAKKK---WIPLRKEWDVQLRFIGSL 82
SV LVAV+K D +I R L G EN++QEA+ K W +EW FIG L
Sbjct: 23 SVRLVAVTKGRDLAEIERKVLRYGDFPLGENRIQEARAKIAAWP--EREW----HFIGPL 76
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q NKV + F ++ +V + A L+ ++ + ++VN E QK G P++
Sbjct: 77 QRNKVR-YLRPFRLVHSVDSLRLAEALAARAKREGYRPRILLEVNVAREPQKHGFDPDEV 135
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK---LTKLSMGMTRDFEL 199
V RQ L + GLM + P +P+ ++ E+AR + L +LSMGM+ DFE+
Sbjct: 136 DAAVQAVRQLEPLELRGLMTMAPLAEDPEEVRWVFRELARMARHLGLPELSMGMSGDFEV 195
Query: 200 AIASGATSVRIGSGIF 215
A+ GAT VR+G +F
Sbjct: 196 AVEEGATLVRVGRALF 211
>gi|167586211|ref|ZP_02378599.1| hypothetical protein BuboB_12783 [Burkholderia ubonensis Bu]
Length = 254
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 96/204 (47%), Gaps = 17/204 (8%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGSL 82
V+L+AVSK + +R A + GQ F EN +QE+ K L EW FIG L
Sbjct: 51 VTLLAVSKTFPADAVRAAHAAGQRAFGENYVQESIDKIDALADLRAALEW----HFIGPL 106
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
QSNK + FD + ++ R K A L+ + L V +QVN E KSG+ P
Sbjct: 107 QSNKTRPVAERFDWVHSIDRLKIAQRLAEQRPAHLPPLNVCVQVNISGEASKSGVAPADV 166
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPK----PHFYLLSEI----ARECKLTKLSMGMT 194
+ L + GLM IP G+ PH L + A L LSMGM+
Sbjct: 167 AEVAHAVAALPSLRLRGLMAIPEPAGDADALRAPHRALRALFDALRADGLPLDTLSMGMS 226
Query: 195 RDFELAIASGATSVRIGSGIFGER 218
D E A+ GAT VR+G+ IFG R
Sbjct: 227 ADLEAAVLEGATIVRVGTAIFGAR 250
>gi|284050438|ref|ZP_06380648.1| hypothetical protein AplaP_03077 [Arthrospira platensis str.
Paraca]
gi|291569699|dbj|BAI91971.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 223
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 102/205 (49%), Gaps = 17/205 (8%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V LVAV+K V +R+A G F EN++QEA+ K L+ D+ IG LQSNK
Sbjct: 20 VRLVAVTKTVSVSAMRLAYEAGVRDFGENRVQEAEAKQSQLQDLTDINWHLIGHLQSNKA 79
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG-IMPNQTKDFV 146
+ ++ FD I +V K A L +QSR + +QV + K G +P D
Sbjct: 80 ATAIAHFDWIHSVDSLKLAQRLDRLATEQSRCPRICLQVKILPDPNKYGWTVPELLADLP 139
Query: 147 IL--CRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARE--------CKLTKLSMGM 193
L C LN++GLM IPP + F ++A + K+ +LSMGM
Sbjct: 140 QLNVCE---SLNIQGLMTIPPQGLTENETRSVFEQTRQLAAQIEGQNWSNIKMQELSMGM 196
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D+ LA+ +GAT +R G IFG R
Sbjct: 197 SGDYLLAVEAGATMIRPGQTIFGPR 221
>gi|182412322|ref|YP_001817388.1| alanine racemase domain-containing protein [Opitutus terrae PB90-1]
gi|177839536|gb|ACB73788.1| alanine racemase domain protein [Opitutus terrae PB90-1]
Length = 235
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 101/216 (46%), Gaps = 11/216 (5%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
+ I + I A R V L+ V+K + G EN++QEA +K + +
Sbjct: 17 KAIVEACIEAGRRPGEVQLLPVTKTQPAAAADYVARYGLPAVGENRVQEAIEKRA--QTQ 74
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
V+ IG LQSNK FD I++V R K L + + LPV +QVN G +
Sbjct: 75 ASVRWELIGHLQSNKARIAAQQFDRIQSVDRAKLLDPLDRAAAELGKTLPVLLQVNAGRD 134
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE----- 183
K G + + L VEGLM I P +P + F L + E
Sbjct: 135 PAKFGAELEDAPQLLEQALGRPHLRVEGLMTIAPLSSDPEVARRTFAALRTLRDELAARF 194
Query: 184 -CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L++LSMGMT DF +AIA G+T+VR+G+ +FG R
Sbjct: 195 GVPLSELSMGMTSDFRVAIAEGSTTVRVGTALFGAR 230
>gi|84622958|ref|YP_450330.1| hypothetical protein XOO_1301 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188577983|ref|YP_001914912.1| hypothetical protein PXO_01992 [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|84366898|dbj|BAE68056.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188522435|gb|ACD60380.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 230
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 100/226 (44%), Gaps = 17/226 (7%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ LQ I +A L R V L+A SK ++ + + GQ F EN +QEA
Sbjct: 3 ASSLQQILDAIHAAATLHAR--TDVRLLAASKTKPAEAVAALAAQGQRAFGENYVQEADA 60
Query: 64 KWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K LR EW IG LQSNK FD ++TV R K LL+ L
Sbjct: 61 KIAQLRALGLEW----HLIGHLQSNKAELASQCFDWVQTVDRAKLIPLLARHRPDDCAPL 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
V IQVN E K G P + +L + GLM IP P F +
Sbjct: 117 NVLIQVNIDDEDSKHGCAPEAIDSLAAAIALQPRLQLRGLMAIPAPFPDQARRGAAFTRM 176
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K + LSMGM+ DF AIA+GAT VR+G+ +FG R
Sbjct: 177 QVLFEQLKTRYRQVDTLSMGMSSDFAEAIAAGATMVRMGTALFGAR 222
>gi|194905647|ref|XP_001981231.1| GG11955 [Drosophila erecta]
gi|190655869|gb|EDV53101.1| GG11955 [Drosophila erecta]
Length = 254
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 117/231 (50%), Gaps = 28/231 (12%)
Query: 19 ILAKRPKDSVS----LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP---LRKE 71
+L +RPK+ + LVAVSK ++ + A GQ F EN +QE ++K L K
Sbjct: 25 VLLQRPKEVQAARPLLVAVSKTKPAEAVIEAYEAGQRDFGENYVQELEEKSRHPDILAKC 84
Query: 72 WDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIKQ----SRFLPVYIQ 125
D++ FIG +Q+NK+++++++ +I+TV EK A+ L K+ + L V IQ
Sbjct: 85 PDIRWHFIGHMQTNKINKVLAVPNLRMIQTVDSEKLATKLDAAWSKRQPAPAEPLQVLIQ 144
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMG-----NPKPHFYLLSE 179
+NT E KSGI R LN+ G+M I A G P P F L +
Sbjct: 145 INTSGEDVKSGIEAKDAPALYQYIRSNLKHLNLTGIMTIG-AFGFDYSKGPNPDFVSLMQ 203
Query: 180 IARE-CKLTKL-------SMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ R C+ L SMGM+ DF+ AI G+T VR+GS IFG R +
Sbjct: 204 VHRSICEAHSLAPDSVLVSMGMSNDFDKAIEMGSTVVRVGSSIFGHRAAKA 254
>gi|288572875|ref|ZP_06391232.1| alanine racemase domain protein [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288568616|gb|EFC90173.1| alanine racemase domain protein [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 238
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 111/222 (50%), Gaps = 18/222 (8%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQV-IFAENKLQEAKKKWIPLRK 70
++ +A + R + V L+ V+K ++I G + EN++QEA+ K +
Sbjct: 16 DRMAEAAFRSGRRPEEVRLLGVTKTHPVERILPVARTGLLWALGENRVQEAEGKMENWPE 75
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR---EKTASLLSLEMIKQSRFLPVYIQVN 127
+ + IG LQ NK + ++LFDVI +V +T L+LE K + I+VN
Sbjct: 76 DLSIPWHLIGHLQRNKARKAMALFDVIHSVDSLRLAETLDRLALEFDKAP--YDIMIEVN 133
Query: 128 TGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
T E K GI P +T D + I Y LN GLM + P + F +L E+
Sbjct: 134 TSGEASKHGISPEETLDLLDGIFSSCGY-LNPVGLMTVGPLCDDQVRIGRAFGVLRELRD 192
Query: 183 EC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L +LSMGM+ DFELAI G+T VR+GS IFGER
Sbjct: 193 QATKEFGRSLPELSMGMSGDFELAIEEGSTIVRVGSAIFGER 234
>gi|268531132|ref|XP_002630692.1| Hypothetical protein CBG02374 [Caenorhabditis briggsae]
gi|187037468|emb|CAP24134.1| hypothetical protein CBG_02374 [Caenorhabditis briggsae AF16]
Length = 550
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 104/204 (50%), Gaps = 15/204 (7%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSNKVS 88
LVAVSK ++ I S GQ F EN +QE ++K L K +++ FIG +QSNK+S
Sbjct: 32 LVAVSKTKSAEMIESCFSQGQRHFGENYVQELEEKSAALASKCAEIRWHFIGQVQSNKIS 91
Query: 89 EIVSLFDV--IETVSREKTASLLSLEMIKQ---SRFLPVYIQVNTGYEIQKSGIMPNQTK 143
+I + + +ETV EK A L E K S L V +QVNT E K GI ++
Sbjct: 92 KICNSSGIWCVETVESEKHARLFDKEWSKHGASSSPLRVLVQVNTSEEENKGGIKISEAP 151
Query: 144 DFVILCRQK-YQLNVEGLMCIPPAMGNPKPHFYLL-------SEIAREC-KLTKLSMGMT 194
R++ L +G M I P F L SEI E + +LSMGM+
Sbjct: 152 KLAEFIRKECLNLKFDGFMTIGSHASGVNPDFEKLYTVRQAWSEITGETPESVELSMGMS 211
Query: 195 RDFELAIASGATSVRIGSGIFGER 218
DF AI G+TSVR+GS +FG R
Sbjct: 212 DDFLQAIQQGSTSVRVGSKLFGAR 235
>gi|297621435|ref|YP_003709572.1| hypothetical protein wcw_1209 [Waddlia chondrophila WSU 86-1044]
gi|297376736|gb|ADI38566.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
Length = 225
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 113/229 (49%), Gaps = 19/229 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + I N+ A R VSL+AV+K + + A G F EN++QE
Sbjct: 1 MSVIDNYHALISDIGNTVRKAGRDPSEVSLIAVTKGFSLEHVLPAYKAGARGFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K K D++ IG+LQ NKV +++ F +I +V + A +S + +
Sbjct: 61 ALPKIEKAPK--DIEWHLIGTLQKNKVRKVIGKFSLIHSVDSLELAQKISETSLVCNTVT 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL---NVEGLMCIPPAMGNPK---PHF 174
PV +Q NT E K G+ Q+++++ +L +++GLM I P + + K F
Sbjct: 119 PVLLQANTSGEQSKHGL---QSEEWIANWDSLLELEGIDLQGLMTIAPFVDDEKVIRRCF 175
Query: 175 YLLSEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L ++ +C L LSMGM+ D+ LAI GAT +RIGS IF
Sbjct: 176 RALRQLRDRLQAMAGNKCTLKHLSMGMSHDYRLAINEGATQLRIGSAIF 224
>gi|317178637|dbj|BAJ56425.1| hypothetical protein HPF30_0328 [Helicobacter pylori F30]
Length = 222
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 114/225 (50%), Gaps = 36/225 (16%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-- 70
KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K K L
Sbjct: 14 KIEKARIAYSRHH-IVKIVAVSKNASLEAIQHYYNCSQRAFGENKVQDLKIKMHSLEHLP 72
Query: 71 -EWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV----YI 124
EW IGSLQ NK++ ++SL ++ ++ K L+L++ K+ L V +
Sbjct: 73 LEW----HMIGSLQKNKINALLSLKPALLHSLDSLK----LALKIEKRCEILGVNLNALL 124
Query: 125 QVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
QVN+ YE KSG+MP +T + + + L ++GLMCI + K EI +
Sbjct: 125 QVNSAYEESKSGVMPEETLEIYSQISETCKHLKLKGLMCIGAHADDEK-------EIEKS 177
Query: 184 CKLTK-----------LSMGMTRDFELAIASGATSVRIGSGIFGE 217
TK LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 178 FTTTKKLFERLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|45550861|ref|NP_651776.2| CG1983 [Drosophila melanogaster]
gi|28316960|gb|AAO39501.1| RE46560p [Drosophila melanogaster]
gi|45446716|gb|AAF57017.2| CG1983 [Drosophila melanogaster]
gi|220948568|gb|ACL86827.1| CG1983-PA [synthetic construct]
gi|220957842|gb|ACL91464.1| CG1983-PA [synthetic construct]
Length = 254
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 120/233 (51%), Gaps = 34/233 (14%)
Query: 19 ILAKRPKDSVS----LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP---LRKE 71
+L +RPK+ + LVAVSK ++ + A GQ F EN +QE ++K L K
Sbjct: 25 VLLQRPKEVQAARPLLVAVSKTKPAEAVIEAYEGGQRDFGENYVQELEEKSRHPDILAKC 84
Query: 72 WDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIKQ----SRFLPVYIQ 125
D++ FIG +QSNK+++I+S+ +I+TV EK A+ L K+ L V IQ
Sbjct: 85 PDIRWHFIGHMQSNKINKILSVPNLHMIQTVDSEKLATKLDAAWSKRQPTPEEPLQVLIQ 144
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCR----QKYQLNVEGLMCIPPAMG-----NPKPHFYL 176
+NT E KSGI + KD L + LN+ G+M I A G P P F
Sbjct: 145 INTSGEDVKSGI---EAKDAPALYQYIKSNLKHLNLMGIMTIG-AFGFDYSNGPNPDFVS 200
Query: 177 LSEIARE-CKLTKL-------SMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L ++ R C+ L SMGM+ DF+ AI G+T VR+GS IFG R +
Sbjct: 201 LMQVHRSICEAHSLAPDSVLVSMGMSNDFDKAIEMGSTVVRVGSSIFGHRAAK 253
>gi|217077921|ref|YP_002335639.1| hypothetical protein THA_1872 [Thermosipho africanus TCF52B]
gi|217037776|gb|ACJ76298.1| conserved hypothetical protein [Thermosipho africanus TCF52B]
Length = 227
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 107/213 (50%), Gaps = 9/213 (4%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD 73
I+N R + LVAVSK + ++ A G IF EN QE + K L K+++
Sbjct: 15 IKNKCKQIDRDYSKIKLVAVSKTFPVEVLKEAYDSGINIFGENYAQELRDKSKVL-KDYN 73
Query: 74 VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ 133
++ FIG +Q NK+ IV + +I +VSR + ++ K + + IQVN E
Sbjct: 74 IEWHFIGRIQINKLKYIVPVASLIHSVSRIEEIEVIDKISKKLGKIQEILIQVNVSGEET 133
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-------KPHFYLLSEIAREC-K 185
KSG+ P Q D + + + V GLM + P N K L +++E
Sbjct: 134 KSGVKPEQLIDLIEKSKLYENVKVIGLMTMAPFTDNEEIIRNVFKKARVLRDNVSKEFPD 193
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +LSMGM+ D+ +A+ GAT +RIGS IFG R
Sbjct: 194 VVELSMGMSNDYLIALEEGATILRIGSKIFGSR 226
>gi|159026852|emb|CAO89103.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 219
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/204 (37%), Positives = 106/204 (51%), Gaps = 21/204 (10%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
L+AVSK V S IR A G FAE+KLQEA K L+ D+ FIG LQ+NK +
Sbjct: 20 LIAVSKQVSSDYIRQAYRAGVRDFAESKLQEAISKQQELKDLPDISWHFIGHLQANKARK 79
Query: 90 IVSLFDVIETVSREKTASLLS-----LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TK 143
++ FD+I ++ K A L LE+ Q V +QV + K G +
Sbjct: 80 VLESFDLIHSLDSLKLAQRLDRLASELEINPQ-----VLLQVKVVPDPDKFGWDKAELIA 134
Query: 144 DFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECK------LTKLSMGMT 194
D L + QL ++GLM I P + G F S++A+ + L LSMGM+
Sbjct: 135 DLPALVNCQ-QLKIQGLMTILPQGLSAGEKLAAFEKTSDLAQIIENSSSLCLPHLSMGMS 193
Query: 195 RDFELAIASGATSVRIGSGIFGER 218
D+ LA+ +GAT +R+G+GIFGER
Sbjct: 194 NDYPLAVKAGATLIRVGTGIFGER 217
>gi|163756167|ref|ZP_02163282.1| hypothetical protein KAOT1_06507 [Kordia algicida OT-1]
gi|161323779|gb|EDP95113.1| hypothetical protein KAOT1_06507 [Kordia algicida OT-1]
Length = 222
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 112/232 (48%), Gaps = 30/232 (12%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +K+Q ++QK+ V+LVAVSK ++ A + GQ +F ENK+QE
Sbjct: 1 MSITSKIQEYQQKLPTH----------VTLVAVSKTKPISDLQEAYTAGQRVFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW L K D+ IG +Q NKV + D+I V K ++ + K +R +
Sbjct: 51 MAEKWEALPK--DISWHMIGHVQRNKVKYMAEFVDLIHGVDSYKLLKEINKQAKKYNRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ----LNVEGLMC----------IPPA 166
+Q+ E K G+ + +L +++Q + + GLM +
Sbjct: 109 NCLLQIKIAEEDSKFGMSVEEAT--TLLASEEFQQLENVAIVGLMGMATFTDDTSQVQQE 166
Query: 167 MGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
N K F L I K+ +SMGM+ D+ELAI G+T VRIGS IFG R
Sbjct: 167 FKNLKTTFDTLKAIHNYLKI--ISMGMSGDYELAIQEGSTMVRIGSSIFGAR 216
>gi|330823646|ref|YP_004386949.1| hypothetical protein Alide2_1026 [Alicycliphilus denitrificans
K601]
gi|329309018|gb|AEB83433.1| protein of unknown function UPF0001 [Alicycliphilus denitrificans
K601]
Length = 264
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 107/239 (44%), Gaps = 39/239 (16%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L + +I + A R SV L+ VSK ++R+A + G + ENK QEA K
Sbjct: 23 RHLATVQARIAAACQRAGRDPASVRLLPVSKTQPEARVRLAHAAGCRLLGENKPQEALGK 82
Query: 65 WIPLRKEWDVQLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
W + ++ IG LQ+NK V+ S F ++++ + A L + + R L
Sbjct: 83 WQATQDLPGLRWSVIGHLQTNKARLVARFASEFQALDSL---RVAEALERRLQAEGRALD 139
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V++QVNT E K G++P + F+ L V GLM + L S A
Sbjct: 140 VFVQVNTSGEASKYGLLPREVAAFLRALPAFPALRVRGLMTL-----------ALFSSDA 188
Query: 182 ---REC-------------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R C L +LSMGM+ DFE+AI GAT VR+G +FG R
Sbjct: 189 ARVRRCFVLLRTLRDRLRQEAPAGITLEELSMGMSGDFEIAIEEGATVVRVGQALFGAR 247
>gi|170760427|ref|YP_001786888.1| hypothetical protein CLK_0946 [Clostridium botulinum A3 str. Loch
Maree]
gi|169407416|gb|ACA55827.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum A3
str. Loch Maree]
Length = 223
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 11/205 (5%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
PKD V+L+ VSK + I A G F ENK+QE K +++ D++ IG LQ
Sbjct: 15 PKD-VTLIGVSKTKPVEYIEEAYEAGLRDFGENKVQELIDKIEYFKEKEDIRWHLIGHLQ 73
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NKV IV +I ++ + + + KQ++ V IQ+N G E K GI +
Sbjct: 74 RNKVKYIVGKVHLIHSLDSIRLLEEIEDKYKKQNKIANVLIQINIGKEESKYGIYKEDLE 133
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPK--PHFYLLSEI--------ARECKLTKLSMGM 193
+ + + + +GLM I P N + +F + EI + ++ LSMGM
Sbjct: 134 NMIDAIEKCENVKAKGLMTIIPKGSNEECAKYFRQMKEIFSALQNKSFKNIEVNYLSMGM 193
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
T D+ +AI G+ +R+G GIFG+R
Sbjct: 194 TGDYPIAIKEGSNMIRVGQGIFGKR 218
>gi|219129146|ref|XP_002184757.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403866|gb|EEC43816.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 250
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 115/220 (52%), Gaps = 36/220 (16%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-----VQLRFIGSL 82
+ LVAVSK + ++ A G +F EN QE K +PL + D V FIG L
Sbjct: 36 IRLVAVSKTKPIELLQQAYDAGCRVFGENYAQELADK-VPLLNQHDGNNDTVSWHFIGGL 94
Query: 83 QSNKVSEIVSLFD------------VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
QSNK + ++ F IETV+ K A+ L+ + + + L +++QVNT
Sbjct: 95 QSNKCNMLLKPFLEQAPNGPTVANLTIETVATVKLANKLN-HAVPEPQTLKIFVQVNTSG 153
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQ----LNVEGLMCIPPAMGNPKPHFYLLSEIARECKL 186
E KSGI P + V LCR Q L ++GLM I A+G+ F +L ++ R+ +
Sbjct: 154 EDSKSGIEP---AECVALCRHVAQECPRLQLQGLMTIG-AVGDLSC-FDVLVDLRRKVAI 208
Query: 187 T--------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ DF AIA+GAT+VR+GS IFG R
Sbjct: 209 ALERDTDDLELSMGMSGDFVQAIAAGATNVRVGSTIFGAR 248
>gi|149195666|ref|ZP_01872723.1| hypothetical protein LNTAR_17278 [Lentisphaera araneosa HTCC2155]
gi|149141128|gb|EDM29524.1| hypothetical protein LNTAR_17278 [Lentisphaera araneosa HTCC2155]
Length = 464
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 10/217 (4%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD 73
I SA +R + L+ V+K + KI GQ FAEN++QE K L + D
Sbjct: 250 IAESAKKHQRDMTDIQLLTVTKNHPADKIFALYKHGQNEFAENRVQELLTKAESLPQ--D 307
Query: 74 VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ 133
+ IG LQSNKV + V + I +V A + ++ + + ++IQ+N EIQ
Sbjct: 308 IHWHLIGPLQSNKVRQAVKVAKTIHSVDNTSLAKRIDRIAEEEGKQIDIFIQLNLTGEIQ 367
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC--------K 185
KSGI + +I C + +N+ GLM + P + + + + E+ +
Sbjct: 368 KSGISTLSLEKLLISCSELKNINLIGLMTMGPLSASKEENLKVFKELKEQSVEHSKYFEN 427
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
KLSMGM+ DF+ AI G+ +RIGS I G R +T
Sbjct: 428 DVKLSMGMSGDFDEAIECGSHILRIGSAIMGTRTYET 464
>gi|168025677|ref|XP_001765360.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683413|gb|EDQ69823.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 242
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 114/222 (51%), Gaps = 18/222 (8%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
Q++ ++ A RP V LVAVSK + ++ G F EN +QE K L +
Sbjct: 18 QRVSQASERANRPASQVRLVAVSKTKPVELVQEVYDAGHRHFGENYVQELIDKAPQLPQ- 76
Query: 72 WDVQLRFIGSLQSNK----VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQV 126
D++ FIG LQSNK ++ + +L+ ++E V +K A+ L+ + R L V +QV
Sbjct: 77 -DIKWHFIGHLQSNKAKALITSVPNLY-MVEGVDSQKVANHLNRAVSGLGRPPLSVLVQV 134
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGNPKPHFYLLSEIARE-- 183
NT E KSG+ P++ D +++ L GLM I + F+ RE
Sbjct: 135 NTSREESKSGVNPSECVDLAKHLKEECPNLRFSGLMTIGMLGYSSTAEFFKTLVNCREKV 194
Query: 184 CKL-------TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
CK +LSMGM+ DFELAI G+T+VR+GS IFG R
Sbjct: 195 CKELEIPVEECELSMGMSGDFELAIEMGSTNVRVGSTIFGAR 236
>gi|238752323|ref|ZP_04613802.1| alanine racemase [Yersinia rohdei ATCC 43380]
gi|238709484|gb|EEQ01723.1| alanine racemase [Yersinia rohdei ATCC 43380]
Length = 231
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 104/224 (46%), Gaps = 11/224 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK- 64
LQ + +I +A R + V+L+AVSK I A++ GQ F EN +QE K
Sbjct: 7 NLQDVRAQIATAARNCARSPEEVTLLAVSKTKPVTAIEEAIAAGQYAFGENYVQEGVDKI 66
Query: 65 --WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ +++ FIG LQSNK + F TV R K A LS + L V
Sbjct: 67 RYFTDNAPTSNLEWHFIGPLQSNKSKLVAENFAWCHTVDRLKIAQRLSAQRPSGMPALNV 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
IQVN E KSGI + + L++ GLM IP + + + ++ +
Sbjct: 127 LIQVNISDEQSKSGIALAELPALAASISELPNLHLRGLMAIPAPETDYQRQLAVFEQMNQ 186
Query: 183 EC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 187 AFLTLKTSYPQMDTLSMGMTDDMAAAIAAGSTLVRIGTAIFGSR 230
>gi|290476320|ref|YP_003469224.1| PLP-binding domain-containing protein [Xenorhabdus bovienii
SS-2004]
gi|289175657|emb|CBJ82460.1| putative enzyme with PLP-binding domain [Xenorhabdus bovienii
SS-2004]
Length = 233
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 103/225 (45%), Gaps = 8/225 (3%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + +I +A R ++L+AVSK + I A+ GQ F EN ++E +K
Sbjct: 7 NLHDVRNRIALTAQKCGRYPQEITLLAVSKTKPADAIAKAIETGQREFGENYVREGVEKV 66
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
D+ FIG LQSNK + FD T+ R K A LS + + L + IQ
Sbjct: 67 QHFANHNDLVWHFIGPLQSNKSRLVAEHFDWCHTIDRLKIAQRLSEQRPENMAPLNILIQ 126
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC- 184
+N E KSGI+ + L + GLM IP + + + ++ +
Sbjct: 127 INISGEDSKSGIILTALPELAKTINALPNLVLRGLMAIPAPESDFERQMAIFHQMEQAFI 186
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ LSMGMT D E AI+ G+T VRIG+ IFG R T
Sbjct: 187 ELKTQYPRVDTLSMGMTDDMEAAISCGSTLVRIGTAIFGARQYNT 231
>gi|238924096|ref|YP_002937612.1| hypothetical protein EUBREC_1734 [Eubacterium rectale ATCC 33656]
gi|238875771|gb|ACR75478.1| hypothetical protein EUBREC_1734 [Eubacterium rectale ATCC 33656]
Length = 247
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 108/228 (47%), Gaps = 13/228 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L +Q I+ + A R V+L+AVSK + + G F ENK+QE
Sbjct: 17 LKDNLHQVQQNIKAACDRAHRNYSDVTLIAVSKTKPVEMLSEIYDEGIREFGENKVQEMC 76
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + K D+ IG LQ+NKV IV +I +V A + + IK +
Sbjct: 77 EKMEVMPK--DIHWHMIGHLQTNKVKYIVGKTSLIHSVDSLHLAKEIQKQAIKHDCSCDI 134
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN E K G ++ V + ++++GLM I P + +P+ + +I +
Sbjct: 135 LVEVNIAGEESKFGTSQDEAISLVEEIAKLDHIHIKGLMTIAPFVDDPEDNRQYFRDIKQ 194
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ LSMGMT D+ +AI GAT VR+G+GIFGER
Sbjct: 195 LSVDIAQKNIDNVSMNVLSMGMTGDYTVAIEEGATMVRVGTGIFGERD 242
>gi|261415781|ref|YP_003249464.1| alanine racemase domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261372237|gb|ACX74982.1| alanine racemase domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 257
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 117/250 (46%), Gaps = 46/250 (18%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +I+ + +A R ++SV LV VSK ++ + A++ G F EN++QEA+ K+
Sbjct: 12 LAALEARIDEACKIAGRSRESVKLVWVSKFHPAEAVENAIALGATDFGENRVQEAELKFS 71
Query: 67 PLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSR----EKTASLLSLEMIKQSRF 119
R D V+ IG +QSNK+ + + D I +++ EK + + Q +
Sbjct: 72 EPRTAKDGSRVRCHVIGPVQSNKLKKAALVADCIHSIASIEAVEKLEKVCAAAANGQGKV 131
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY------------QLNVEGLMCIPPAM 167
L + QVN G E KSG+ ++ + F+ ++ L GLM I
Sbjct: 132 LDILFQVNAGEEETKSGLDVHEAEAFLEDLEKRAGAAADGKSENFPHLRFRGLMTIGKNT 191
Query: 168 GNPKPHFYLLSEIAREC-------------------KLTKLSMGMTRDFELAIASGATSV 208
G ++E +REC +LSMGMT D E+AI G+T +
Sbjct: 192 G--------VAEDSRECFAFLRGLRDKFLAKGGAFAAFDQLSMGMTGDLEVAIEEGSTMI 243
Query: 209 RIGSGIFGER 218
R+G+ +FGER
Sbjct: 244 RVGTALFGER 253
>gi|302326933|gb|ADL26134.1| conserved hypothetical protein TIGR00044 [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 250
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 117/250 (46%), Gaps = 46/250 (18%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +I+ + +A R ++SV LV VSK ++ + A++ G F EN++QEA+ K+
Sbjct: 5 LAALEARIDEACKIAGRSRESVKLVWVSKFHPAEAVENAIALGATDFGENRVQEAELKFS 64
Query: 67 PLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSR----EKTASLLSLEMIKQSRF 119
R D V+ IG +QSNK+ + + D I +++ EK + + Q +
Sbjct: 65 EPRTAKDGSRVRCHVIGPVQSNKLKKAALVADCIHSIASIEAVEKLEKVCAAAANGQGKV 124
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY------------QLNVEGLMCIPPAM 167
L + QVN G E KSG+ ++ + F+ ++ L GLM I
Sbjct: 125 LDILFQVNAGEEETKSGLDVHEAEAFLEDLEKRAGAAADGKSENFPHLRFRGLMTIGKNT 184
Query: 168 GNPKPHFYLLSEIAREC-------------------KLTKLSMGMTRDFELAIASGATSV 208
G ++E +REC +LSMGMT D E+AI G+T +
Sbjct: 185 G--------VAEDSRECFAFLRGLRDKFLAKGGAFAAFDQLSMGMTGDLEVAIEEGSTMI 236
Query: 209 RIGSGIFGER 218
R+G+ +FGER
Sbjct: 237 RVGTALFGER 246
>gi|50549285|ref|XP_502113.1| YALI0C21934p [Yarrowia lipolytica]
gi|49647980|emb|CAG82433.1| YALI0C21934p [Yarrowia lipolytica]
Length = 239
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 111/211 (52%), Gaps = 29/211 (13%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
LV VSK + I+ GQ F EN +QE +K L +E +Q FIGSLQSNK ++
Sbjct: 27 LVCVSKYKPASDIQAVYDLGQRHFGENYVQELMEKVANLPQE--IQWHFIGSLQSNKCAQ 84
Query: 90 IV----SLFDVIETVSREKTASLLSLEMIKQSRF-----LPVYIQVNTGYEIQKSGIMPN 140
+ +L+ +ETV EK A L+ + +QS + + V++QVNT E QKSG+ P
Sbjct: 85 LAKNIPNLW--VETVDGEKKAKKLN-DAREQSEYKDKAPVHVFVQVNTSGESQKSGLDPE 141
Query: 141 QTK---DFVILCRQKYQLNVEGLMCI----PPAMGNPKPHFYLLSEI------ARECKLT 187
D++I ++ QL + GLM I F L +I A +
Sbjct: 142 DVSKVVDYII--KECPQLKLAGLMTIGSIEQSKASEENKDFATLVQIRDSIEQAFDITGL 199
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ DFE AI G+T+VRIGS IFG R
Sbjct: 200 ELSMGMSSDFEEAIKQGSTNVRIGSTIFGGR 230
>gi|333027797|ref|ZP_08455861.1| hypothetical protein STTU_5301 [Streptomyces sp. Tu6071]
gi|332747649|gb|EGJ78090.1| hypothetical protein STTU_5301 [Streptomyces sp. Tu6071]
Length = 244
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 107/236 (45%), Gaps = 26/236 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R + V+L+AV+K + +R+ S G EN+ QEA
Sbjct: 11 LAANLAKVEERIAKACAAAGRSRGDVTLIAVTKTYPASDVRLLSSLGVGQVGENRDQEAG 70
Query: 63 KKW-----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K +PL W FIG LQ+NK + + +V R + A+ L +++
Sbjct: 71 PKAAACADLPL--TW----HFIGQLQTNKAKSVARYASYVHSVDRARLAAPLGAAAVREG 124
Query: 118 RFLPVYIQV------NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AM 167
R + +QV + + G P++ + V L GLM + P
Sbjct: 125 REIGALVQVALDAEGDPAAHAGRGGAHPDEVPELVDRIAATEGLRPAGLMTVAPLAGRYA 184
Query: 168 GNPKPHFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
G+ + F L+E+A + T +S GM+ D E AIA+GAT VRIGS I G R
Sbjct: 185 GDARAAFARLAELASLVRAAHPAATMVSAGMSGDLEEAIAAGATHVRIGSAILGTR 240
>gi|302518523|ref|ZP_07270865.1| alanine racemase domain-containing protein [Streptomyces sp. SPB78]
gi|318057558|ref|ZP_07976281.1| hypothetical protein SSA3_06454 [Streptomyces sp. SA3_actG]
gi|318078778|ref|ZP_07986110.1| hypothetical protein SSA3_19183 [Streptomyces sp. SA3_actF]
gi|302427418|gb|EFK99233.1| alanine racemase domain-containing protein [Streptomyces sp. SPB78]
Length = 244
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 107/236 (45%), Gaps = 26/236 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R + V+L+AV+K + +R+ S G EN+ QEA
Sbjct: 11 LAANLAKVEERIAKACAAAGRSRGDVTLIAVTKTYPASDVRLLSSLGVGQVGENRDQEAG 70
Query: 63 KKW-----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K +PL W FIG LQ+NK + + +V R + A+ L +++
Sbjct: 71 PKAAECADLPL--TW----HFIGQLQTNKAKSVARYASYVHSVDRARLAAPLGAAAVREG 124
Query: 118 RFLPVYIQV------NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AM 167
R + +QV + + G P++ + V L GLM + P
Sbjct: 125 REIGALVQVALDAEGDPAAHAGRGGAHPDEVPELVDRIAATEGLRPAGLMTVAPLAGRYA 184
Query: 168 GNPKPHFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
G+ + F L+E+A + T +S GM+ D E AIA+GAT VRIGS I G R
Sbjct: 185 GDARAAFARLAELASLVRAAHPAATMVSAGMSGDLEEAIAAGATHVRIGSAILGTR 240
>gi|255010408|ref|ZP_05282534.1| hypothetical protein Bfra3_14824 [Bacteroides fragilis 3_1_12]
gi|313148210|ref|ZP_07810403.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313136977|gb|EFR54337.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 222
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 106/214 (49%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+LA+ P V LVAVSK ++ I A GQ IF E+K+QE K+ L K D++ F
Sbjct: 10 VLAELP-SGVRLVAVSKFHPNEAIEEAYRAGQRIFGESKVQEMTGKYESLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK+ + +I + K + ++ + IK R + +Q++ E K G
Sbjct: 67 IGHLQTNKIKYMAPYVSMIHGIDSYKLLAEVNKQAIKAGRVIRCLLQIHIAQEETKFGFS 126
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKP------------HFYLLSEIAREC 184
++ K+ + K N++ GLM + + + H A E
Sbjct: 127 FDECKEMLNADEWKALANIQICGLMGMATNTDSKEQIEREFRSLNCFFHEVKKQYFADEP 186
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ LAIA G+T VR+GS IFGER
Sbjct: 187 TFCELSMGMSHDYHLAIAEGSTLVRVGSKIFGER 220
>gi|78486175|ref|YP_392100.1| hypothetical protein Tcr_1834 [Thiomicrospira crunogena XCL-2]
gi|78364461|gb|ABB42426.1| Conserved hypothetical protein; UPF0001 member [Thiomicrospira
crunogena XCL-2]
Length = 227
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 110/227 (48%), Gaps = 14/227 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + Q +++I+++ A R D + L+AVSK + I GQ F EN +QEA
Sbjct: 4 TLIQRYQNVQKRIDDAMQSANR-TDHIQLLAVSKTKPIEDIIALADIGQRAFGENYVQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + + D++ FIG +QSNK I + +V R K A LS + L
Sbjct: 63 LDK---IAQRPDLEWHFIGPIQSNKTKPIAENVQWVHSVDRFKIARRLSEQRPDNLPPLN 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFY--- 175
+ ++VN E K+G PN+ D + L + GLM IP + K F+
Sbjct: 120 ILLEVNISNEASKAGFSPNEILDVTKQILELPHLALRGLMAIPAKAYSHDEQKQPFHQMK 179
Query: 176 LLSEIAR----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL E + + + LSMGM+ D E AI GAT VRIG+ IFG R
Sbjct: 180 LLLESMQTHFPDQPIDTLSMGMSADLEAAIEEGATIVRIGTDIFGAR 226
>gi|332519634|ref|ZP_08396098.1| alanine racemase domain protein [Lacinutrix algicola 5H-3-7-4]
gi|332044193|gb|EGI80387.1| alanine racemase domain protein [Lacinutrix algicola 5H-3-7-4]
Length = 222
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 110/233 (47%), Gaps = 29/233 (12%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ N L + KQ + + V+LVAVSK + A + GQ IF ENK+QE
Sbjct: 1 MNIQNNLNIIKQSL----------PEQVTLVAVSKTKPVSDLMEAYNAGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + K D+ IG +Q NKV + +I V K ++ + IK R +
Sbjct: 51 MAEKHEQMPK--DITWHMIGHVQRNKVKYMAPFVSLIHGVESFKLLKEINKQAIKHDRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY----QLNVEGLMCIPPAMGNP---KPH 173
+Q+ E K G+ + D IL + + +N+ G+M + N K
Sbjct: 109 DCLLQIKIAEEDSKFGMSTQEASD--ILQSEDFSTLKNINITGVMGMATFTDNQLQIKKE 166
Query: 174 FYLLSEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F LL + ++ C L +SMGM+ D++LAI G+T VRIGS IFG R
Sbjct: 167 FKLLKTVFEELKLLNSKNCNLKTISMGMSGDYKLAIDCGSTMVRIGSSIFGAR 219
>gi|166711257|ref|ZP_02242464.1| hypothetical protein Xoryp_07245 [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 230
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 94/205 (45%), Gaps = 15/205 (7%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---EWDVQLRFIGS 81
+ V L+AVSK ++ + + GQ F EN +QEA K LR EW IG
Sbjct: 22 RTDVRLLAVSKTKPAEAVAALAAQGQRAFGENYVQEADAKIAQLRALGLEW----HLIGH 77
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQSNK FD ++TV R K LL+ L V IQVN E K G P
Sbjct: 78 LQSNKAELASQCFDWVQTVDRAKLIPLLARHRPDDCAPLKVLIQVNIDDEDSKHGCAPEA 137
Query: 142 TKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIARECK-----LTKLSMGM 193
+ +L + GLM IP P F + + + K + LSMGM
Sbjct: 138 IDSLAEAIALQPRLQLRGLMAIPAPFPDQARRGAAFTRMQVLFEQLKTRYRQVDTLSMGM 197
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ DF AIA+GAT VR+G+ +FG R
Sbjct: 198 SSDFAEAIAAGATMVRVGTALFGAR 222
>gi|86133337|ref|ZP_01051919.1| alanine racemase, N-terminal domain [Polaribacter sp. MED152]
gi|85820200|gb|EAQ41347.1| alanine racemase, N-terminal domain [Polaribacter sp. MED152]
Length = 222
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 103/209 (49%), Gaps = 20/209 (9%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
++V+LVAVSK ++ A GQ +F ENK+QE K+ L K D+Q IG LQSN
Sbjct: 15 ENVTLVAVSKTKPVADLQEAYDAGQRVFGENKIQEMVDKYDVLPK--DIQWHMIGHLQSN 72
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV + D+I V + KT ++ E K +R + +Q E K G+ ++ +
Sbjct: 73 KVKYMAHFVDLIHGVDKLKTLKVIDKEAKKHNRTINCLLQAKIAEEDSKFGLSFSEIE-- 130
Query: 146 VILCRQKY----QLNVEGLMCIPP------AMGNPKPHFYLLSEIARE------CKLTKL 189
IL ++ +NV G M + + N + +E C L L
Sbjct: 131 TILNSDEFAGLENINVAGFMGMATFTSDENQLNNEFSSLKTFFDKQKEHLNLPNCNLQIL 190
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMGM+ D+ LAI +G+T +R+G+ IFG R
Sbjct: 191 SMGMSGDYALAIKNGSTMIRVGNAIFGSR 219
>gi|317495980|ref|ZP_07954342.1| alanine racemase domain-containing protein [Gemella moribillum
M424]
gi|316913884|gb|EFV35368.1| alanine racemase domain-containing protein [Gemella moribillum
M424]
Length = 225
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 119/233 (51%), Gaps = 29/233 (12%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK--- 57
M++ N L+ I+N + R + ++L+AV+K V ++++ A G FAEN+
Sbjct: 1 MNVKNNLEKINNDIKNICQKSGRNFEDITLIAVTKYVGDERVKEAQEAGVHDFAENRAVN 60
Query: 58 LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K+K+ L W IGSLQ+ KV + ++ D + RE L++E+ K++
Sbjct: 61 YIERKEKF--LEATW----HLIGSLQTRKVRDAINKVDYFHALDRES----LAVEIEKRA 110
Query: 118 RF-LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPH 173
+ ++QVNT E K G++P +FV + ++ V GLM + P + + +
Sbjct: 111 EHVINCFVQVNTSGEESKHGLIPEAVLEFVKGLEKYPKIRVVGLMTMAPFLEDEATLRSC 170
Query: 174 FYLLSEIARE----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
F L E+ E CK LSMGM+ D+E+AI GAT +RIG+ + G
Sbjct: 171 FRKLRELRDEIKGLCLEYAPCKF--LSMGMSNDYEIAIEEGATHIRIGTALVG 221
>gi|167036133|ref|YP_001671364.1| alanine racemase domain-containing protein [Pseudomonas putida
GB-1]
gi|166862621|gb|ABZ01029.1| alanine racemase domain protein [Pseudomonas putida GB-1]
Length = 228
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 94/203 (46%), Gaps = 10/203 (4%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL--RFIG 80
R SV L+AVSK + IR + G F EN LQEA K L D+ L FIG
Sbjct: 24 RDPASVQLLAVSKTKPASAIREIHTAGVRDFGENYLQEALTKQQELS---DLPLIWHFIG 80
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK I FD + +V R K A LS + L + +QVN E KSG P
Sbjct: 81 PIQSNKTKAIAEHFDWVHSVDRLKIAQRLSEQRPAGLAPLNLCLQVNVSGEDSKSGCAPA 140
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIAREC--KLTKLSMGMTR 195
L + GLM IP + + F L ++ L LSMGM+
Sbjct: 141 DLPALAKAVAGLPNLRLRGLMAIPEPTDDRAAQEAAFAHLRQLQENLGLDLDTLSMGMSH 200
Query: 196 DFELAIASGATSVRIGSGIFGER 218
D E AIA GAT VRIG+ +FG R
Sbjct: 201 DLEAAIAQGATWVRIGTALFGAR 223
>gi|320155279|ref|YP_004187658.1| hypothetical protein VVM_00844 [Vibrio vulnificus MO6-24/O]
gi|319930591|gb|ADV85455.1| hypothetical protein YggS proline synthase co-transcribed bacterial
PROSC-like protein [Vibrio vulnificus MO6-24/O]
Length = 208
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 97/200 (48%), Gaps = 11/200 (5%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK---WIPLRKEWDVQLRFIGSLQSNK 86
L+AVSK + I A GQ F EN +QE +K + E ++ FIG +QSNK
Sbjct: 3 LLAVSKTKPVEAILEAYHAGQRAFGENYVQEGVEKVRFFAEQHPEKSIEWHFIGPIQSNK 62
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
+ F + T+ R+K A L+ + + L V IQVNT E KSG+ +
Sbjct: 63 SRLVAEHFAWVHTIDRDKIAQRLNDQRPAELPPLQVLIQVNTSGEASKSGVSGEEIFALA 122
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSE-----IARECKLTKLSMGMTRDFE 198
L L + GLM IP + + F L+E + R + LSMGM+ D +
Sbjct: 123 ELISTLPNLTLRGLMSIPENVDDHASQLAAFQPLAELQQRLVQRYPSVDTLSMGMSGDMD 182
Query: 199 LAIASGATSVRIGSGIFGER 218
AI SG+T VRIG+ IFG R
Sbjct: 183 AAIESGSTMVRIGTAIFGHR 202
>gi|123965691|ref|YP_001010772.1| TIM-barrel fold family protein [Prochlorococcus marinus str. MIT
9515]
gi|123200057|gb|ABM71665.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
str. MIT 9515]
Length = 212
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 106/196 (54%), Gaps = 5/196 (2%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+V+L+AVSK S+ I++ GQ F E++ QEA +K + L+ D++ FIG +QSNK
Sbjct: 16 NVNLLAVSKGFGSQDIKIINDKGQNDFGESRFQEAIEKKLLLKDFKDIKWHFIGRIQSNK 75
Query: 87 VSEIVSLFDVIETV-SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
+ +IV FD I +V S EK + ++ + L + +QV + K G P
Sbjct: 76 IRKIVQNFDYIHSVDSYEKLLKISNIAFEEHKNPL-IMLQVKLMDDPSKGGFNPKDLLGK 134
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTKLSMGMTRDFELAIA 202
+Q + ++GLM I P N + L E +A KL SMGM++D++ A+
Sbjct: 135 WDEIKQLKSIKIKGLMTINPKGLNSTQNIKLFKECRNLANSLKLHDCSMGMSQDWKEAVE 194
Query: 203 SGATSVRIGSGIFGER 218
+G+T +R+GS IFG R
Sbjct: 195 AGSTWLRLGSIIFGNR 210
>gi|255577143|ref|XP_002529455.1| proline synthetase associated protein, putative [Ricinus communis]
gi|223531071|gb|EEF32921.1| proline synthetase associated protein, putative [Ricinus communis]
Length = 245
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 111/221 (50%), Gaps = 18/221 (8%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
++ +A A R +SV +VAVSK IR G F EN +QE K L +
Sbjct: 20 RVRQAAERAGRRPESVRIVAVSKTKPVSLIRHVYDAGHRCFGENYVQEVVDKAPQLPE-- 77
Query: 73 DVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQVNT 128
D++ FIG LQSNKV + V +++ V EK A++L + R L V++QVNT
Sbjct: 78 DIEWHFIGHLQSNKVKTLLAGVPNLAMVQGVDNEKVANVLDRVVSTLGRNPLKVFVQVNT 137
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCI--PPAMGNPKPHFYLLSEIARE-C 184
E KSGI P+ + + L + GLM I P P+ +F LS E C
Sbjct: 138 SGEASKSGIEPSSCVALAEHVKLRCPNLVLSGLMTIGMPDYTSTPE-NFRKLSNCRLEVC 196
Query: 185 KL-------TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K +LSMGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 197 KALGMAEDHCELSMGMSGDFEQAIEMGSTNVRVGSTIFGPR 237
>gi|261838392|gb|ACX98158.1| hypothetical protein KHP_0961 [Helicobacter pylori 51]
Length = 222
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 115/225 (51%), Gaps = 36/225 (16%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-- 70
KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K K L
Sbjct: 14 KIEKARIAYSRHH-IVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKIKMHSLEHLP 72
Query: 71 -EWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV----YI 124
EW IGSLQ NK++ ++SL ++ ++ K L+L++ K+ L V +
Sbjct: 73 LEW----HMIGSLQENKINALLSLKPALLHSLDSLK----LALKIEKRCEILGVNLNALL 124
Query: 125 QVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
QVN+ YE KSG+MP +T + + + +L ++GLMCI + K EI +
Sbjct: 125 QVNSAYEKSKSGVMPEETLEVYSQISETCKRLKLKGLMCIGAHADDEK-------EIEKS 177
Query: 184 CKLTK-----------LSMGMTRDFELAIASGATSVRIGSGIFGE 217
TK LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 178 FTTTKKLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|323486921|ref|ZP_08092237.1| hypothetical protein HMPREF9474_03988 [Clostridium symbiosum
WAL-14163]
gi|323399784|gb|EGA92166.1| hypothetical protein HMPREF9474_03988 [Clostridium symbiosum
WAL-14163]
Length = 234
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 109/208 (52%), Gaps = 14/208 (6%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81
++P+D V+L+AVSK + +R A G F ENK+QE +K L D++ IG
Sbjct: 22 RQPQD-VTLIAVSKTKPVELLREAYDAGVRDFGENKVQEILEKAPALPD--DIRWHMIGH 78
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQ NKV +++ +I +V A + E K++ + + ++VN G E K G +
Sbjct: 79 LQKNKVRQVIDKTVLIHSVDTVALAEQIEKEAAKKNIDVDILLEVNIGEEESKYGFRAGE 138
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIARECK--------LTKLS 190
+ V + + ++++GLM I P + N + + F L ++ + K + LS
Sbjct: 139 VLEAVTIISKFSHVHIKGLMTIAPFVENSEENRDIFLKLYQLNVDIKSKNIDNVNMAVLS 198
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGMT D+ AI GAT +R+G+GIFG R
Sbjct: 199 MGMTGDYMTAIEEGATMIRVGTGIFGAR 226
>gi|195159394|ref|XP_002020564.1| GL14062 [Drosophila persimilis]
gi|198449718|ref|XP_002136950.1| GA26943 [Drosophila pseudoobscura pseudoobscura]
gi|194117333|gb|EDW39376.1| GL14062 [Drosophila persimilis]
gi|198130728|gb|EDY67508.1| GA26943 [Drosophila pseudoobscura pseudoobscura]
Length = 254
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 116/227 (51%), Gaps = 28/227 (12%)
Query: 19 ILAKRPKDSVS----LVAVSKMVDSKKIRVALSCGQVIFAENKLQE-AKKKWIP--LRKE 71
+L +RPK+ + LVAVSK + + A GQ F EN +QE +K P L +
Sbjct: 25 VLLQRPKEIQAAKPLLVAVSKTKPADAVIEAYKTGQRDFGENYVQELVEKSQHPEILAQC 84
Query: 72 WDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIK----QSRFLPVYIQ 125
D++ FIG LQ+NK+++I+SL +I+TV EK A+ L K L V IQ
Sbjct: 85 PDIKWHFIGHLQNNKINKILSLPNLHMIQTVDSEKLATKLDAAWSKLKPDTEPPLRVLIQ 144
Query: 126 VNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMG-----NPKPHFYLLSE 179
+NT E KSGI + K + + + L + G+M I A G P P F L E
Sbjct: 145 INTSGEEAKSGIETKEAPKLYQFISKNLKHLQLVGIMTIG-AFGFDYSTGPNPDFVSLME 203
Query: 180 IARE-CKLTKL-------SMGMTRDFELAIASGATSVRIGSGIFGER 218
+ R C+ L SMGM+ D++ AI G+T VR+GS IFG R
Sbjct: 204 VHRSICEANSLTPNSVLVSMGMSNDYDRAIEMGSTVVRVGSSIFGHR 250
>gi|166368333|ref|YP_001660606.1| hypothetical protein MAE_55920 [Microcystis aeruginosa NIES-843]
gi|166090706|dbj|BAG05414.1| hypothetical protein MAE_55920 [Microcystis aeruginosa NIES-843]
Length = 219
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 105/206 (50%), Gaps = 19/206 (9%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
S L+AVSK V S IR A G FAE+KLQEA K L+ D+ FIG LQ+NK
Sbjct: 17 STRLIAVSKQVSSDYIRQAYRAGVRDFAESKLQEAISKQQELKDLPDIYWHFIGHLQANK 76
Query: 87 VSEIVSLFDVIETVSREKTASLLS-----LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
+++ FD+I ++ K A L LE+ Q V +QV + K G ++
Sbjct: 77 ARKVLESFDLIHSLDSLKLAQRLDRLAAELEINPQ-----VLLQVKVIPDPDKFGWDTDE 131
Query: 142 TKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECK------LTKLSMG 192
+ QL ++GLM I P + G F S++A+ + L LSMG
Sbjct: 132 LIADIPALVNCQQLKIQGLMTILPQGLSAGEKLAAFEKTSDLAQIIENSSSLCLPHLSMG 191
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D+ LAI +GAT +R+G+ IFG+R
Sbjct: 192 MSNDYPLAIKAGATLIRVGTSIFGDR 217
>gi|302533947|ref|ZP_07286289.1| alanine racemase domain-containing protein [Streptomyces sp. C]
gi|302442842|gb|EFL14658.1| alanine racemase domain-containing protein [Streptomyces sp. C]
Length = 239
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 110/235 (46%), Gaps = 24/235 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I ++ A R ++ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAENLARVEERIASACAAAGREREEVTLIVVTKTYPASDVRLLADLGVRHVAENRDQDAA 67
Query: 63 KKW-----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K +PL W F+G LQ+NKV + V+++V R K + LS Q
Sbjct: 68 PKAAACSDLPL--SW----HFVGQLQTNKVRSVAGYAQVVQSVDRPKLVTALSAAAEAQG 121
Query: 118 RFLPVYIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG----N 169
R L +Q+ +G + G P+ + L L ++GLM + P G
Sbjct: 122 RELGCLVQIALDAESGERGARGGAAPDLMAELADLVAAAPGLRIDGLMTVAPLAGPYAGR 181
Query: 170 PKPHFYLLSEIA---RECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ F + E++ RE T +S GM+ D E A+ +GAT VR+G+ + G RP
Sbjct: 182 EQAAFERMMELSSSLREAHPAATMVSAGMSADLEQAVLAGATHVRVGTAVLGARP 236
>gi|307244143|ref|ZP_07526261.1| pyridoxal phosphate enzyme, YggS family [Peptostreptococcus
stomatis DSM 17678]
gi|306492514|gb|EFM64549.1| pyridoxal phosphate enzyme, YggS family [Peptostreptococcus
stomatis DSM 17678]
Length = 233
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 112/227 (49%), Gaps = 18/227 (7%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
++ K I +++ R + V L+ V+K VD I AL G ENK QE ++K+
Sbjct: 7 RIDQVKSNIRDASNKVNRNPEEVLLLGVTKTVDVDVIEEALEYGITDVGENKPQELQRKY 66
Query: 66 --IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
I R +W IG+LQ+NKV I+ D+I ++ R A ++ R +
Sbjct: 67 GLIGNRAKW----HQIGTLQTNKVKYIIDKVDLIHSLDRMGLAEEINKRADSIGRDIRCL 122
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ-LNVEGLMCIPPAMGNP---KPHFYLLSE 179
+QVN E K GI + F+ C K++ + + GLM + P + + F L E
Sbjct: 123 VQVNVSKEETKHGIYVEDLETFIRECADKFKRIKIVGLMTMAPDSDDEDEVRAIFRKLKE 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K + +LSMGM+ D+++AI G+T +R+G+ IFG+R
Sbjct: 183 VFENIKNMSIEGVEMKELSMGMSGDYQIAIEEGSTIIRVGTSIFGKR 229
>gi|294628845|ref|ZP_06707405.1| YggS family pyridoxal phosphate enzyme [Streptomyces sp. e14]
gi|292832178|gb|EFF90527.1| YggS family pyridoxal phosphate enzyme [Streptomyces sp. e14]
Length = 239
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 110/235 (46%), Gaps = 24/235 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R ++ V+L+ V+K + +R+ G AEN+ QEA
Sbjct: 8 LAGNLARVEERIATACAAAGRGREEVTLIVVTKTYPASDVRLLADLGVRQVAENRDQEAA 67
Query: 63 KKW-----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K +PL W F+G LQ+NKV +V D +++V R + + LS E ++
Sbjct: 68 PKAAECADLPL--TW----HFVGQLQTNKVRSVVGYADFVQSVDRLRLVTALSKEAVRAG 121
Query: 118 RFLPVYIQV--NTGYEI--QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---- 169
R + IQV + G ++ G+ P + L + GLM + P G
Sbjct: 122 REVGCLIQVALDAGESARGERGGVAPGGIGELADAIASAEGLRLGGLMTVAPLTGEYAGR 181
Query: 170 PKPHFYLLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ F L ++ A T +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 182 QQAAFERLMDLSTRLRANHPAATMVSAGMSGDLEQAVAAGATHVRVGTSVLGVRP 236
>gi|295696449|ref|YP_003589687.1| alanine racemase domain protein [Bacillus tusciae DSM 2912]
gi|295412051|gb|ADG06543.1| alanine racemase domain protein [Bacillus tusciae DSM 2912]
Length = 249
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 20/229 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS G ++ K +I + R V LVAVSK +D+ + + + G EN+LQ
Sbjct: 1 MSTGERIAEVKMRIARACARVGRDPSGVRLVAVSKYIDAARAKEWVQAGLTDLGENRLQV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS---LEMIKQS 117
A++K L V FIG LQ+NKV ++ F + ++ R L+ E +
Sbjct: 61 AQEKLEALGS--GVTWHFIGHLQTNKVKAVIQHFAWLHSLDRPSLVDALARRFAEGPPEG 118
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN---VEGLMCIPPAMGNPKPHF 174
L V QVN E QKSG+ + DF+ + K + + + G M + PA+ +P+
Sbjct: 119 PPLKVLAQVNVAGEEQKSGVAREEIGDFLDYIQSKNRFSRWIMAGFMTMAPAVNDPEEVR 178
Query: 175 YLLSE------------IARECKLTKLSMGMTRDFELAIASGATSVRIG 211
+ E + R +LSMGM+ DFE+A+ GAT VR+G
Sbjct: 179 GVFRELRQLRDRFGHHPVWRNRDNLELSMGMSGDFEVAVEEGATIVRLG 227
>gi|238917083|ref|YP_002930600.1| hypothetical protein EUBELI_01153 [Eubacterium eligens ATCC 27750]
gi|238872443|gb|ACR72153.1| Hypothetical protein EUBELI_01153 [Eubacterium eligens ATCC 27750]
Length = 230
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 100/209 (47%), Gaps = 14/209 (6%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
+ P+D V LVAVSK + + CG F EN +QE K L K D+ IG
Sbjct: 21 GRNPED-VCLVAVSKTKPKEMLMEVYDCGIRQFGENYVQEMVDKTDTLPK--DITWHMIG 77
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
LQ NKV +V +I +V E+ A +S + +K+ + I+VN E K G+ +
Sbjct: 78 HLQRNKVKYVVGRAALIHSVDSERLAVAISDDAVKKGLVQDILIEVNVAGEENKFGVTCD 137
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR-----------ECKLTKL 189
+ ++FV + + G M P + NP+ + E+ + + L
Sbjct: 138 EAEEFVKKIAVLPGIRIRGFMTSAPFVENPEDNRKYFRELKQLLVDINNKNIDNVYMNVL 197
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMGMT D+ +A+ GAT VR+G+ IFG R
Sbjct: 198 SMGMTNDYTVAVEEGATHVRVGTAIFGAR 226
>gi|146301191|ref|YP_001195782.1| alanine racemase domain-containing protein [Flavobacterium
johnsoniae UW101]
gi|146155609|gb|ABQ06463.1| alanine racemase domain protein [Flavobacterium johnsoniae UW101]
Length = 219
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 100/215 (46%), Gaps = 16/215 (7%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL 76
+ I A P + V+LVAVSK + A GQ IF ENK+QE +KW + K D+Q
Sbjct: 8 NTIKATLP-EHVTLVAVSKTKPVSDLMQAYEAGQRIFGENKIQEMTEKWEQMPK--DIQW 64
Query: 77 RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG 136
IG +QSNKV + +I V K ++ + +K +R + +Q+ E K G
Sbjct: 65 HMIGHVQSNKVKFMAPYVTLIHGVDSLKLLQEINKQALKNNRTIDCLLQIYIAEEESKFG 124
Query: 137 IMPNQTKDFVILCRQKYQLNVE-----GLMCIPPAMGNPKPHFYLLSEI--------ARE 183
+ N+ + + K N+ G+ K F L I
Sbjct: 125 LDENELNELLTSVEFKELKNIRILGLMGMATFTEDQNQIKKEFTHLKSIFNSIKNLKTEN 184
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
C L +SMGM+ D++LAI G+T VRIGS IFG R
Sbjct: 185 CSLNTISMGMSGDYQLAIECGSTMVRIGSSIFGGR 219
>gi|256827363|ref|YP_003151322.1| pyridoxal phosphate enzyme, YggS family [Cryptobacterium curtum DSM
15641]
gi|256583506|gb|ACU94640.1| pyridoxal phosphate enzyme, YggS family [Cryptobacterium curtum DSM
15641]
Length = 230
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 106/233 (45%), Gaps = 21/233 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + + ++ AI A R +V L+AVSK V + A+ G F EN+ +
Sbjct: 1 MTIAERYRALADEVAREAIRAGRDSQAVKLIAVSKTVGPDAVAEAIHAGAQAFGENRPDQ 60
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K+ P EW FIG++QS ++ +IV +I +V E + + +
Sbjct: 61 IMDKQPRFP-EAEW----HFIGNIQSRRIKDIVPHATLIHSVFEESHLARIDHAAAAIDK 115
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFY 175
+ I+VN E K G P+ + CR + V GLM + P G+ + F
Sbjct: 116 VQDILIEVNVSGEASKGGAAPDDVASLIDACRNLSHIRVRGLMTMAP-QGDLQVAEETFV 174
Query: 176 LLSEIARE----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ + + L++LSMGM+ D+ AI GAT VRIG IF ++
Sbjct: 175 HLAALKNKLVASLDADMAAHLSELSMGMSEDWRCAIKQGATMVRIGRAIFSDQ 227
>gi|221214454|ref|ZP_03587425.1| conserved hypothetical protein TIGR00044 [Burkholderia multivorans
CGD1]
gi|221165711|gb|EED98186.1| conserved hypothetical protein TIGR00044 [Burkholderia multivorans
CGD1]
Length = 232
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 98/205 (47%), Gaps = 17/205 (8%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGS 81
SVSL+AVSK + +R A + GQ F EN +QE+ K L EW FIG
Sbjct: 28 SVSLLAVSKTFPADAVRAAHAAGQRAFGENYVQESIDKIDALADLRASLEW----HFIGP 83
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQSNK + +D + +V R K A L+ + L V +QVN E KSG+ P +
Sbjct: 84 LQSNKTRAVAERYDWVHSVDRLKIAQRLAEQRPAHLPPLNVCVQVNISGEASKSGVAPAE 143
Query: 142 TKDFVILCRQKYQLNVEGLMCIP-PAM---GNPKPHFYLLSEI----ARECKLTKLSMGM 193
+ L + GLM IP PA PH L + A L LSMGM
Sbjct: 144 VAEVARAVAALPSLRLRGLMAIPEPAADLDAQRVPHRALRTLFDALRADGLPLDTLSMGM 203
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D E A+ GAT VRIG+ IFG R
Sbjct: 204 SADLEAAVLEGATIVRIGTAIFGAR 228
>gi|326436868|gb|EGD82438.1| alanine racemase [Salpingoeca sp. ATCC 50818]
Length = 298
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 100/207 (48%), Gaps = 20/207 (9%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
LVAVSK + + A GQ +F EN +QE +K R D++ FIG LQSNK +
Sbjct: 87 LVAVSKTKPLQLVLDAYEAGQRVFGENYVQELVEKSNDPRVPEDIEWHFIGRLQSNKSNT 146
Query: 90 I--VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV- 146
+ V V+ETV+ EK A L+ + L V++QVNT E K G+ P+
Sbjct: 147 LARVKNLKVVETVASEKLARTLNRAFAEHDAPLRVFMQVNTSGEENKGGVEPSDCAALAA 206
Query: 147 ILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLL--------SEIARECKLTKLSM 191
+ + L + GLM I M N F L I + +LSM
Sbjct: 207 FIANECDHLQLAGLMTI--GMLNRSLKTDDTNEDFETLVSCRGRVAEAIGVDADALELSM 264
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DFE AI G+T+VR+GS IFG R
Sbjct: 265 GMSSDFEHAIEMGSTNVRVGSTIFGAR 291
>gi|255632027|gb|ACU16366.1| unknown [Glycine max]
Length = 239
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 108/225 (48%), Gaps = 15/225 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +++ +A + R + +VA SK +R G F EN +QE +K
Sbjct: 10 LKAVQDRVQAAAERSGRNVQEIRVVAASKTKSVSALREVYDAGLRCFGENYVQELLQKAP 69
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSL---FDVIETVSREKTASLLSLEMIKQSR-FLPV 122
L D+Q IG+LQSNKV +++ +ETV +K A+ L + R L V
Sbjct: 70 QLPD--DIQWHLIGNLQSNKVKPLIAAVPNLACVETVDDKKIANFLDRAVANVGRKPLKV 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP-HFYLLSEIA 181
++QVNT E K G+ P D V L GLM I + P +F LS
Sbjct: 128 FVQVNTSGETSKFGVEPALCVDLVKHITNCPNLEFSGLMTIGMLDYSSTPENFETLSNCR 187
Query: 182 RE-CKL-------TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E CK +LSMGMT DFE AI G+T+VRIG+ IFG R
Sbjct: 188 SEVCKALGISETQCELSMGMTGDFEQAIEMGSTNVRIGTAIFGAR 232
>gi|260826782|ref|XP_002608344.1| hypothetical protein BRAFLDRAFT_126227 [Branchiostoma floridae]
gi|229293695|gb|EEN64354.1| hypothetical protein BRAFLDRAFT_126227 [Branchiostoma floridae]
Length = 295
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 119/240 (49%), Gaps = 26/240 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRP----KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+G L+ +++ +A AKRP K LVAV+K + I A GQ F EN +
Sbjct: 12 VGRALRSVLDRVQTAA--AKRPEHLPKVQPRLVAVTKTKPKELILSAYKAGQRHFGENYV 69
Query: 59 QEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLL--SL 111
QE K + + D++ FIG LQ NKV+++ + ++ +ETV EK A+ + S
Sbjct: 70 QELTDKASDPEIVGQLNDIRWHFIGHLQRNKVNKVTGIPNLYMVETVDSEKLATAINASW 129
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIP----PA 166
E + ++ L V IQVNT E QK G P + D + + L G+M I
Sbjct: 130 EKLGRTDRLKVMIQVNTSREEQKHGTSPEKVCDLYKHVVENCPHLQAVGIMTIGVYDYDL 189
Query: 167 MGNPKPHFYLLSEIARE-CKL-------TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P P F +L E C+ +LSMGM+ DFE AI G+T++R+GS IFG R
Sbjct: 190 RNGPNPDFQVLLECRTNICQTFNLQPEDVELSMGMSTDFEHAIEVGSTNIRVGSTIFGAR 249
>gi|53714239|ref|YP_100231.1| hypothetical protein BF2949 [Bacteroides fragilis YCH46]
gi|253564755|ref|ZP_04842211.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|265766269|ref|ZP_06094310.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|52217104|dbj|BAD49697.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
gi|251946220|gb|EES86597.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|263253937|gb|EEZ25402.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|301163769|emb|CBW23324.1| putative racemase [Bacteroides fragilis 638R]
Length = 222
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 105/214 (49%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+LA+ P V LVAVSK ++ I A GQ IF E+K+QE K+ L K D++ F
Sbjct: 10 VLAELP-SGVRLVAVSKFHPNEAIEEAYRAGQRIFGESKVQEMTGKYESLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK+ + +I + K + ++ + IK R + +Q++ E K G
Sbjct: 67 IGHLQTNKIKYMAPYVSMIHGIDSYKLLAEVNKQAIKAERVIRCLLQIHIAQEETKFGFS 126
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKP------------HFYLLSEIAREC 184
++ K+ + K N++ GLM + + + H A E
Sbjct: 127 FDECKEMLNAAEWKALANIQICGLMGMATNTDSKEQIEREFRSLNCFFHEVKKQYFANEP 186
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ LAI G+T VR+GS IFGER
Sbjct: 187 TFCELSMGMSHDYHLAIKEGSTLVRVGSKIFGER 220
>gi|257867503|ref|ZP_05647156.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257873832|ref|ZP_05653485.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257877582|ref|ZP_05657235.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
gi|257801559|gb|EEV30489.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257807996|gb|EEV36818.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257811748|gb|EEV40568.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
Length = 223
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 16/225 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q+I++S L R V L AV+K VD++ RV L G AEN++++
Sbjct: 2 ISENLHKIQQEIQDSCALVSRNASDVCLTAVTKSVDTETTRVLLENGVRDCAENRVEKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF-LP 121
+K L+ DV+ FIG+LQ KV I++ D + K L+ E+ K++ +
Sbjct: 62 EKKAALKDYPDVRWHFIGNLQRRKVKSIINEIDFFHALDSIK----LAQEIQKRAEHPIN 117
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+++VN E K GI + F+ ++ V GLM + P + + E+
Sbjct: 118 CFVEVNVSQEATKQGIFVEEVMAFIEALASFDKIRVVGLMTMAPLTASKDEQHQIFKELK 177
Query: 182 R------ECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIF 215
R + LT + SMGM+ DF +AI GAT +R+G+ +F
Sbjct: 178 RIQQQIADLHLTHAPCLETSMGMSNDFPIAIQEGATFIRVGTALF 222
>gi|308062334|gb|ADO04222.1| hypothetical protein HPCU_05365 [Helicobacter pylori Cuz20]
Length = 222
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 114/225 (50%), Gaps = 36/225 (16%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-- 70
KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K K L
Sbjct: 14 KIEKARIAYSRHH-IVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKIKMHSLEHLP 72
Query: 71 -EWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV----YI 124
EW IGSLQ NK++ ++SL ++ ++ K L+L++ K+ L V +
Sbjct: 73 LEW----HMIGSLQENKINALLSLKPALLHSLDSLK----LALKIEKRCEMLGVNLNALL 124
Query: 125 QVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
QVN+ YE KSG+MP +T + + + L ++GLMCI + K EI +
Sbjct: 125 QVNSAYEESKSGVMPEETLEIYSQISETCKHLKLKGLMCIGAHADDEK-------EIEKS 177
Query: 184 CKLTK-----------LSMGMTRDFELAIASGATSVRIGSGIFGE 217
TK LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 178 FITTKKLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|222151010|ref|YP_002560163.1| hypothetical protein MCCL_0760 [Macrococcus caseolyticus JCSC5402]
gi|222120132|dbj|BAH17467.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 220
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 120/230 (52%), Gaps = 24/230 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L + KQ+IE SA+ + +++AV+K V + + A+ G EN+++
Sbjct: 1 MEVRKNLDIIKQEIE-SALQKSADHKAPTIIAVTKYVTIDRAKEAMEAGICHLGENRIEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL--EMIKQS- 117
+K L D + FIG+LQS KV E+++ D + ++ R LSL E+ K++
Sbjct: 60 FLEKREAL---GDATMHFIGTLQSRKVKEVINQVDYLHSLDR------LSLAKEIDKRAE 110
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
+ + ++QVN E K GI ++ DF+ Q+ V GLM + PA + + +F
Sbjct: 111 KTIKCFVQVNVSDEQSKHGIKRDEVMDFIHGLASYSQIEVVGLMTMAPAAADESELRRYF 170
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ ++ E + T+LSMGM+ D+++A+ GAT +RIG+ + G
Sbjct: 171 KTMKQLQLEVQNAHLSYAPCTELSMGMSNDYQIAVEEGATFIRIGTKLVG 220
>gi|147861921|emb|CAN80917.1| hypothetical protein VITISV_024616 [Vitis vinifera]
Length = 245
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 112/224 (50%), Gaps = 24/224 (10%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
++ +A + R D V +VAVSK IR G F EN +QE +K L +
Sbjct: 20 RVRQAAERSGRRSDQVRVVAVSKTKPVSLIRQVYDAGHRCFGENYVQEINEKAPQLPE-- 77
Query: 73 DVQLRFIGSLQSNKVSEIVSL---FDVIETVSREKTASLLS--LEMIKQSRFLPVYIQVN 127
D++ FIG LQSNKV +++ ++E V EK A+ L + I++ + L V +QVN
Sbjct: 78 DIEWHFIGHLQSNKVKPLLAAVPNLAMVEGVDNEKIANQLDRVVSGIRR-KPLKVLVQVN 136
Query: 128 TGYEIQKSGIMPNQ----TKDFVILCRQKYQLNVEGLMCI--PPAMGNPKPHFYLLSEIA 181
T E+ KSG+ P+ K + C L GLM I P P+ LL+
Sbjct: 137 TSGEVSKSGVEPSGCVELAKHVKLGC---PNLEFSGLMTIGMPDYSSTPENFRRLLNCRI 193
Query: 182 RECKL-------TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
CK +LSMGM+ DFE AI G+T+VRIGS IFG R
Sbjct: 194 EVCKALGMAEEQCELSMGMSGDFEQAIEMGSTNVRIGSTIFGPR 237
>gi|295094847|emb|CBK83938.1| pyridoxal phosphate enzyme, YggS family [Coprococcus sp. ART55/1]
Length = 231
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 106/210 (50%), Gaps = 14/210 (6%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQEAKKKWIPLRKEWDVQLRFI 79
A R + V+L+AVSK I LS V F ENK+QE K+ + + V I
Sbjct: 20 AGRSPEDVTLIAVSKTKPLSDIEELLSDTDAVDFGENKVQELVDKYENVSRP--VNWHMI 77
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G LQ+NKV IV +I +V A + E K + + I+VN E K G+
Sbjct: 78 GHLQTNKVKYIVDKVCMIHSVDSLNLAKTIEKEAAKHDVTVNILIEVNVAQEETKFGLSC 137
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECK--------LTK 188
++ + + + V+GLM I P + +P+ +F L +++ + + ++
Sbjct: 138 DEVLPLIQEIKDFPHIRVKGLMTIAPFVDDPEDNRVYFRKLKDLSLDIQSKSIDNIDMSV 197
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGMT D+E+A+ GAT VR+G+GIFG R
Sbjct: 198 LSMGMTNDYEVAVEEGATLVRVGTGIFGAR 227
>gi|225460901|ref|XP_002278892.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|297737470|emb|CBI26671.3| unnamed protein product [Vitis vinifera]
Length = 245
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 112/224 (50%), Gaps = 24/224 (10%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
++ +A + R D V +VAVSK IR G F EN +QE +K L +
Sbjct: 20 RVRQAAERSGRRSDQVRVVAVSKTKPVSLIRQVYDAGHRCFGENYVQEINEKAPQLPE-- 77
Query: 73 DVQLRFIGSLQSNKVSEIVSL---FDVIETVSREKTASLLS--LEMIKQSRFLPVYIQVN 127
D++ FIG LQSNKV +++ ++E V EK A+ L + I++ + L V +QVN
Sbjct: 78 DIEWHFIGHLQSNKVKPLLAAVPNLAMVEGVDNEKIANQLDRVVSGIRR-KPLKVLVQVN 136
Query: 128 TGYEIQKSGIMPNQ----TKDFVILCRQKYQLNVEGLMCI--PPAMGNPKPHFYLLSEIA 181
T E+ KSG+ P+ K + C L GLM I P P+ LL+
Sbjct: 137 TSGEVSKSGVEPSGCVELAKHVKLGC---PNLEFSGLMTIGMPDYSSTPENFRRLLNCRI 193
Query: 182 RECKL-------TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
CK +LSMGM+ DFE AI G+T+VRIGS IFG R
Sbjct: 194 EVCKALGMAEEQCELSMGMSGDFEQAIEMGSTNVRIGSTIFGPR 237
>gi|303289263|ref|XP_003063919.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454235|gb|EEH51541.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 248
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 100/216 (46%), Gaps = 28/216 (12%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW---------DVQLRFIG 80
LVAV K +++R G +F EN QE W P +E D + FIG
Sbjct: 28 LVAVGKTKPVEQLRECYDAGHRVFGENYAQERSIHWSPYDRELTEKSPAMPPDTRWHFIG 87
Query: 81 SLQSNKVSEIVSL---FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
LQSNK +V +IETV K A+ L+ ++ R P+ + VNT E K G+
Sbjct: 88 HLQSNKAKTLVKAVPGLAMIETVDSVKLANRLADACVEAGRVEPLGVMVNTSGEASKHGV 147
Query: 138 MPNQTKDFV--ILCRQKYQLNVEGLMCI--PPAMGNPKPHFYLLSE-----------IAR 182
PN I+ L GLM I P P+ +F LL++ +
Sbjct: 148 EPNAATALASHIVNECAPALAFRGLMTIGMPDYTSRPE-NFELLAKARSTRDDVCDALGL 206
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +LSMGM+ D+E AI+ G+ +VR+GS IFG R
Sbjct: 207 DATEVELSMGMSGDYESAISMGSDNVRVGSTIFGAR 242
>gi|109947055|ref|YP_664283.1| hypothetical protein Hac_0453 [Helicobacter acinonychis str.
Sheeba]
gi|109714276|emb|CAJ99284.1| conserved hypothetical protein [Helicobacter acinonychis str.
Sheeba]
Length = 222
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 117/231 (50%), Gaps = 34/231 (14%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
K+ KIE + I R V +VA+SK + I+ +C Q F ENK+Q+ K K
Sbjct: 7 KIDFLIAKIEKARIAYSR-HHIVKIVAISKNAPLEAIQHYYNCSQRAFGENKVQDLKTKM 65
Query: 66 IPLRK---EWDVQLRFIGSLQSNKVSEIVSL-------FDVIETVSREKTASLLSLEMIK 115
L EW +GSLQ NK++ ++SL D +E L+L++ K
Sbjct: 66 HYLEHLPLEW----HMVGSLQENKINTLLSLKPALLHSLDSLE----------LALKIEK 111
Query: 116 QSRFLPV----YIQVNTGYEIQKSGIMPNQTKDFVI-LCRQKYQLNVEGLMCIPPAMGNP 170
+ + L V +QVN+ YE KSG+ P +T DF + + + ++GLMCI +
Sbjct: 112 RCKTLGVTLNALLQVNSAYEKSKSGVRPEETLDFYSQISKTCKHIKLKGLMCIGAHTDDE 171
Query: 171 ---KPHFYLLSEIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ F + ++ + K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 172 AKIEKSFIMTKKLFDQLKNASILSMGMSNDFELAIACGANLLRIGSFLFKE 222
>gi|308184797|ref|YP_003928930.1| hypothetical protein HPSJM_05210 [Helicobacter pylori SJM180]
gi|308060717|gb|ADO02613.1| hypothetical protein HPSJM_05210 [Helicobacter pylori SJM180]
Length = 222
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 118/225 (52%), Gaps = 22/225 (9%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
K+ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K K
Sbjct: 7 KIDALITKIEKARIAYSRHH-IVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKIKM 65
Query: 66 IPLRK---EWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLP 121
L EW IGSLQ NK++ ++SL ++ ++ K L+L++ K+ L
Sbjct: 66 HSLEHLPLEW----HMIGSLQENKINALLSLKPALLHSLDSLK----LALKIEKRCEILG 117
Query: 122 V----YIQVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKP---H 173
+ +QVN+ YE KSG+MP +T + + + +L ++GLMCI + K
Sbjct: 118 INLNALLQVNSAYEESKSGVMPEETLEIYSQISETCKRLKLKGLMCIGAHADDEKKIEKS 177
Query: 174 FYLLSEIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
F ++ + K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 178 FTTTKKLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|33239843|ref|NP_874785.1| TIM-barrel fold family protein [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237369|gb|AAP99437.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 207
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 107/207 (51%), Gaps = 25/207 (12%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ V LVAVSK + +IR S GQV F E++LQEA K L+ V+ FIGSLQ+N
Sbjct: 12 NGVKLVAVSKGQSTSQIRSLASQGQVDFGESRLQEALPKLNSLKDLKTVRWHFIGSLQAN 71
Query: 86 KVSEIVSLFDVIETVSREKTA---SLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
KV ++V FDVI ++ K A S +S E K+ R V QV + K G P+
Sbjct: 72 KVRQVVKAFDVIHSIDSLKLAKRISRISAEECKKPR---VMAQVKFRNDPSKFGFTPDGL 128
Query: 143 ----KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK-------LTKLSM 191
+F+ L ++V GLM I P + L REC+ L SM
Sbjct: 129 LEVWNEFIALP----NIDVIGLMTISPKELDLNQRKILF----RECRVFSEKLGLKDCSM 180
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM++D++ A+ GAT +R+GS +FG R
Sbjct: 181 GMSQDWKEAVEEGATWIRVGSLLFGGR 207
>gi|323691969|ref|ZP_08106218.1| YggS family Pyridoxal phosphate enzyme [Clostridium symbiosum
WAL-14673]
gi|323503978|gb|EGB19791.1| YggS family Pyridoxal phosphate enzyme [Clostridium symbiosum
WAL-14673]
Length = 234
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 109/208 (52%), Gaps = 14/208 (6%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81
++P+D V+L+AVSK + +R A G F ENK+QE +K L D++ IG
Sbjct: 22 RQPQD-VTLIAVSKTKPVELLREAYDAGIRDFGENKVQEILEKAPALPD--DIRWHMIGH 78
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQ NKV +++ +I +V A + E K++ + + ++VN G E K G +
Sbjct: 79 LQKNKVRQVIDKTVLIHSVDTVALAEQIEKEAAKKNIDVDILLEVNIGEEESKYGFRAGE 138
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIARECK--------LTKLS 190
+ V + + ++++GLM I P + N + + F L ++ + K + LS
Sbjct: 139 VLEAVTIISKFSHVHIKGLMTIAPFVENSEENRDIFQKLYQLNVDIKSKNIDNVNMAVLS 198
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGMT D+ AI GAT +R+G+GIFG R
Sbjct: 199 MGMTGDYMTAIEEGATMIRVGTGIFGAR 226
>gi|291563462|emb|CBL42278.1| pyridoxal phosphate enzyme, YggS family [butyrate-producing
bacterium SS3/4]
Length = 227
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 118/238 (49%), Gaps = 31/238 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++++ + + A R V+L++VSK + A G+ + ENK+QE
Sbjct: 1 MSVAENIKNVRERMNAACLRAGRDPKEVTLISVSKTKPVSMLMEAYEAGERDYGENKVQE 60
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K+ IP D + IG LQ+NKV +++ +I + A + E K+
Sbjct: 61 ITEKRPQIP----EDAKFHMIGHLQTNKVGQVIDKVVLIHSCDSVHLAEKIEKEAAKRDM 116
Query: 119 FLPVYIQVNTGYEIQKSG-----IMPN--QTKDFVILCRQKYQLNVEGLMCIPPAMGNP- 170
V ++VN E K G ++PN + + F +C V+G+M I P + N
Sbjct: 117 IANVLLEVNVAREESKFGMFLEDVIPNLKEIQAFPHVC-------VKGMMTIAPNVENAE 169
Query: 171 --KPHFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +F L ++ + K ++ LSMGMT DFE+A+ GAT +R+G+GIFG R
Sbjct: 170 ENRKYFKELYQLYVDIKNKNIDNGTMSVLSMGMTGDFEVAVEEGATMIRVGTGIFGSR 227
>gi|328352082|emb|CCA38481.1| UPF0001 protein PM0112 [Pichia pastoris CBS 7435]
Length = 246
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 106/216 (49%), Gaps = 28/216 (12%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
RP V+LV VSK+ S I G F EN +QE K L K D++ FIG L
Sbjct: 35 RP---VNLVCVSKLKPSSDIMALYDAGFRHFGENYVQELVSKAQELPK--DIKWHFIGGL 89
Query: 83 QSNKVSEIVSLFD---VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
Q+NK ++ + D +ET+ K A+ L+ + V+IQVNT E QKSGI
Sbjct: 90 QTNKCKDLATRIDNLYAVETIDSIKKANKLNSSRDASKPKINVFIQVNTSGEEQKSGI-- 147
Query: 140 NQTKDFVILCR----QKYQLNVEGLMCI-----PPAMGNPKPHFYLLSEIARECKLT--- 187
+ D + L + L ++GLM I A G F L+ A KL
Sbjct: 148 SSYDDLLALAKVIKNDCPNLTLKGLMTIGSIQQSTAAGERNKDFDQLT--AHNEKLESDL 205
Query: 188 ----KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+LSMGM+ DFE AI G+TSVR+GS IFG RP
Sbjct: 206 GTTLELSMGMSSDFEQAIRQGSTSVRVGSSIFGARP 241
>gi|225873891|ref|YP_002755350.1| conserved hypothetical protein TIGR00044 [Acidobacterium capsulatum
ATCC 51196]
gi|225792315|gb|ACO32405.1| conserved hypothetical protein TIGR00044 [Acidobacterium capsulatum
ATCC 51196]
Length = 243
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 16/232 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ N+L ++ I + A R ++SV L+AVSK + I A++ G +F EN++QE
Sbjct: 10 TFSNRLAQVEESIAAACRHAGRTRESVQLMAVSKTHPADAIAEAVAAGVTLFGENRVQEF 69
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++K L + + ++ IG LQSNK + +F ++TV + A L + +
Sbjct: 70 QQKAQELEQLGIQNAEVHLIGHLQSNKTGKAAEIFAGVDTVDSLRLAERLQDAAARLGKT 129
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCR--QKYQLNVEGLMCIPPAMGN---PKPHF 174
LPV +++ E K+G+ P + +L R + L + GLM + P G + F
Sbjct: 130 LPVLLEIKLSEEEAKTGLSPESEETRTLLERLPELTALKMRGLMTVAPLTGGETGTRDCF 189
Query: 175 YLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L ++ R+ +LSMGM+ DF +AI G+T VRIG+ +FG+R
Sbjct: 190 RRLRKL-RDAWSAAYPRLNFEELSMGMSGDFAIAIEEGSTCVRIGTALFGKR 240
>gi|188588531|ref|YP_001921583.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum E3
str. Alaska E43]
gi|188498812|gb|ACD51948.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum E3
str. Alaska E43]
Length = 224
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 107/211 (50%), Gaps = 17/211 (8%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGS 81
PK+ V L+AVSK + ++ A G F ENK+QE +K++ +P D++ IG+
Sbjct: 15 PKN-VELLAVSKTKPIEDLKQAYEAGIRDFGENKVQELVSKEEVLP----KDIRWHLIGN 69
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQ+NKV +V +I ++S K + + K + V IQ+N G E KSGI+ +
Sbjct: 70 LQTNKVKYLVDKVYLIHSLSSIKLLNEIEKVFEKNNTVANVLIQINIGREESKSGILKEE 129
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMG--NPKPHF--------YLLSEIARECKLTKLSM 191
+ + + +G+M I P N + +F YL + K+ LSM
Sbjct: 130 LQGIIEAIEACNYVLAKGIMVIIPKGDEKNNRKYFKETKEIFDYLKVRKYKNIKMEVLSM 189
Query: 192 GMTRDFELAIASGATSVRIGSGIFGERPCQT 222
GMT DF AI G+T VRIG GIFGER T
Sbjct: 190 GMTHDFNEAIEEGSTLVRIGQGIFGERNYST 220
>gi|238754611|ref|ZP_04615965.1| alanine racemase [Yersinia ruckeri ATCC 29473]
gi|238707242|gb|EEP99605.1| alanine racemase [Yersinia ruckeri ATCC 29473]
Length = 237
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 105/229 (45%), Gaps = 16/229 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + +I A +R + ++L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDVRDRIATIAKNCERSPEEITLLAVSKTKPVAAIEEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K +++ FIG LQSNK + F TV R K A+ LS + + L
Sbjct: 63 VDKIHYFAGNTELEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIATRLSEQRPAEMPALN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF------- 174
+ IQVN E KSGI + + L + GLM IP P+ HF
Sbjct: 123 ILIQVNISDEQSKSGIKLAELPELAANIHDLPHLRLRGLMAIPA----PESHFDRQLAVF 178
Query: 175 -----YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ ++ LSMGMT D AI +G+T VRIG+ IFG R
Sbjct: 179 QQMNQAFLALKKHYPQMDTLSMGMTDDMAAAIGAGSTLVRIGTAIFGAR 227
>gi|189349455|ref|YP_001945083.1| hypothetical protein BMULJ_00583 [Burkholderia multivorans ATCC
17616]
gi|189333477|dbj|BAG42547.1| conserved hypothetical protein [Burkholderia multivorans ATCC
17616]
Length = 232
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 98/205 (47%), Gaps = 17/205 (8%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGS 81
SVSL+AVSK + +R A + GQ F EN +QE+ K L EW FIG
Sbjct: 28 SVSLLAVSKTFPADAVRAAHAAGQRAFGENYVQESIDKIDALADLRASLEW----HFIGP 83
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQSNK + +D + +V R K A L+ + L V +QVN E KSG+ P +
Sbjct: 84 LQSNKTRAVAERYDWVHSVDRLKIAQRLAEQRPAHLPPLNVCVQVNISGEASKSGVAPAE 143
Query: 142 TKDFVILCRQKYQLNVEGLMCIP-PAM---GNPKPHFYLLSEI----ARECKLTKLSMGM 193
+ L + GLM IP PA PH L + A L LSMGM
Sbjct: 144 VAEVARAVAALPSLRLRGLMAIPEPAADLDAQRVPHRALRTLFDALRADGLALDTLSMGM 203
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D E A+ GAT VR+G+ IFG R
Sbjct: 204 SADLEAAVLEGATIVRVGTAIFGAR 228
>gi|317182312|dbj|BAJ60096.1| hypothetical protein HPF57_1022 [Helicobacter pylori F57]
Length = 222
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 114/225 (50%), Gaps = 36/225 (16%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-- 70
KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K K L
Sbjct: 14 KIEKARIAYSRHH-IVKIVAVSKDASLEAIQNYYNCSQRAFGENKVQDLKIKMHSLEHLP 72
Query: 71 -EWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV----YI 124
EW IGSLQ NK++ ++SL ++ ++ K L+L++ K+ L V +
Sbjct: 73 LEW----HMIGSLQENKINALLSLKPALLHSLDSLK----LALKIEKRCEILGVNLNALL 124
Query: 125 QVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
QVN+ YE KSG+MP +T + + + L ++GLMCI + K EI +
Sbjct: 125 QVNSAYEKSKSGVMPEETLEIYSQISETCKHLKLKGLMCIGAHADDEK-------EIEKS 177
Query: 184 CKLTK-----------LSMGMTRDFELAIASGATSVRIGSGIFGE 217
TK LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 178 FITTKKLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|26991770|ref|NP_747195.1| alanine racemase domain protein [Pseudomonas putida KT2440]
gi|24986880|gb|AAN70659.1|AE016710_4 conserved hypothetical protein [Pseudomonas putida KT2440]
Length = 228
Score = 95.5 bits (236), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 92/203 (45%), Gaps = 10/203 (4%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL--RFIG 80
R SV L+AVSK + IR + G F EN LQEA K L D+ L FIG
Sbjct: 24 RDPASVQLLAVSKTKPASAIREIHAAGVHDFGENYLQEALTKQQALS---DLPLIWHFIG 80
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK I FD + +V R K A LS + L + +QVN E KSG P
Sbjct: 81 PIQSNKTKAIAEHFDWVHSVDRLKIAQRLSEQRPAGLAPLNICLQVNVSGEDSKSGCTPA 140
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR-----ECKLTKLSMGMTR 195
L + GLM IP + + + + L LSMGM+
Sbjct: 141 DLPALAKAVAALPNLRLRGLMAIPEPTEDRATQEAAFASLRKLQEGLGLGLDTLSMGMSH 200
Query: 196 DFELAIASGATSVRIGSGIFGER 218
D E AIA GAT VRIG+ +FG R
Sbjct: 201 DLEAAIAQGATWVRIGTALFGAR 223
>gi|254779613|ref|YP_003057719.1| hypothetical protein HELPY_1030 [Helicobacter pylori B38]
gi|254001525|emb|CAX29543.1| Conserved hypothetical protein [Helicobacter pylori B38]
Length = 222
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 116/218 (53%), Gaps = 22/218 (10%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-- 70
KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K K L
Sbjct: 14 KIEKARIAYSR-HHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKTKMHSLEHLP 72
Query: 71 -EWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV----YI 124
EW IGSLQ NK++ ++SL ++ ++ K L+L++ K+ L V +
Sbjct: 73 LEW----HMIGSLQENKINALLSLKPALLHSLDSLK----LALKIEKRCEILGVNLNALL 124
Query: 125 QVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEI 180
QVN+ YE KSG++P +T + + + +L ++GLMCI + K F ++
Sbjct: 125 QVNSAYEESKSGVVPEETLETYSQISETCKRLKLKGLMCIGAHTDDEKKIEKSFITTKKL 184
Query: 181 ARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 185 FDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|161525824|ref|YP_001580836.1| alanine racemase domain-containing protein [Burkholderia
multivorans ATCC 17616]
gi|160343253|gb|ABX16339.1| alanine racemase domain protein [Burkholderia multivorans ATCC
17616]
Length = 235
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 98/205 (47%), Gaps = 17/205 (8%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGS 81
SVSL+AVSK + +R A + GQ F EN +QE+ K L EW FIG
Sbjct: 31 SVSLLAVSKTFPADAVRAAHAAGQRAFGENYVQESIDKIDALADLRASLEW----HFIGP 86
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQSNK + +D + +V R K A L+ + L V +QVN E KSG+ P +
Sbjct: 87 LQSNKTRAVAERYDWVHSVDRLKIAQRLAEQRPAHLPPLNVCVQVNISGEASKSGVAPAE 146
Query: 142 TKDFVILCRQKYQLNVEGLMCIP-PAM---GNPKPHFYLLSEI----ARECKLTKLSMGM 193
+ L + GLM IP PA PH L + A L LSMGM
Sbjct: 147 VAEVARAVAALPSLRLRGLMAIPEPAADLDAQRVPHRALRTLFDALRADGLALDTLSMGM 206
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D E A+ GAT VR+G+ IFG R
Sbjct: 207 SADLEAAVLEGATIVRVGTAIFGAR 231
>gi|297588310|ref|ZP_06946953.1| YggS family pyridoxal phosphate enzyme [Finegoldia magna ATCC
53516]
gi|297573683|gb|EFH92404.1| YggS family pyridoxal phosphate enzyme [Finegoldia magna ATCC
53516]
Length = 226
Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 116/236 (49%), Gaps = 31/236 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L + ++ A + P L+AV+K VD +I+ A+ CG ENK QE
Sbjct: 1 MSIKDNLNEVNENLKKFASHGETP----HLIAVTKTVDIDRIKEAIDCGVTDIGENKPQE 56
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR-------EKTASLLSLEM 113
K+ L+ V IG LQSNKV ++V +I ++ R EK AS ++
Sbjct: 57 MSWKYDELKD--CVNYHMIGHLQSNKVKDVVGKACLIHSLDRMSVLKEIEKRASAIN--- 111
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP- 172
+ IQ+N E QKSG+ + F+ + + V+GLM I P +P+
Sbjct: 112 ----KPQDCLIQLNVAEEEQKSGLYLDDLDSFIEEIEKTEFVKVKGLMSIAPFAEDPEEI 167
Query: 173 --HFYLLSEIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
F + EI + K T+ LSMGM+ D+++A+ G+ VR+GS IFG+R
Sbjct: 168 RWVFKKMREIYDKIKNTEYKNIEMKYLSMGMSHDYKVALEEGSNMVRVGSFIFGKR 223
>gi|187251199|ref|YP_001875681.1| alanine racemase domain-containing protein [Elusimicrobium minutum
Pei191]
gi|186971359|gb|ACC98344.1| Alanine racemase domain protein [Elusimicrobium minutum Pei191]
Length = 229
Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 12/178 (6%)
Query: 49 GQVIFAENKLQEAKKKWI-----PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSRE 103
G AE+KLQ+A+K+W LR + L FIG+LQ NK+++IV+LFD I++V
Sbjct: 54 GAASAAESKLQDAQKRWNKDEFKALRNK--TALHFIGALQKNKIAKIVNLFDYIDSVDTI 111
Query: 104 KTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI 163
+ A ++ + +Q + + +Q+ +SG P V + +N++G M I
Sbjct: 112 EHAEFINAKAKEQGKKVNCLLQIKLTKSATQSGANPQDVHTLVEHIKTLEHINLKGFMAI 171
Query: 164 PPAMGNPKPHFYLLSEIA--RECKL---TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
P + N + +L EI + +L +LS+GM+ DFE A+ G+T RIGS IFG
Sbjct: 172 APQVENIEDLRHLFKEIKILNDKELGPEAELSLGMSNDFETAVEEGSTMPRIGSAIFG 229
>gi|297566665|ref|YP_003685637.1| alanine racemase domain-containing protein [Meiothermus silvanus
DSM 9946]
gi|296851114|gb|ADH64129.1| alanine racemase domain protein [Meiothermus silvanus DSM 9946]
Length = 212
Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 106/209 (50%), Gaps = 10/209 (4%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIR-VALSCGQVIFAENKLQEAKKKWIPLRK 70
++I+ +A A R ++ LVAV+K ++I+ L G E+++QEA K
Sbjct: 8 ERIQAAARRAGRDPGAIRLVAVTKGHPPQEIQDKVLRYGHFPLGESRVQEALPKMAAFPG 67
Query: 71 -EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
EW + IG LQ NKV + S F +I ++ K A +S + + V ++VN
Sbjct: 68 LEWHL----IGPLQRNKV-KFCSGFRLIHSLDSLKLAEYMSKKAREMGHTFRVLVEVNLS 122
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKL 186
E QK G + +Q + R+ L V+GLM I P P +P F LS +A L
Sbjct: 123 LEPQKHGFLESQLTHALPRIREMEGLEVQGLMTIAPYTEKPQTVRPIFAQLSRLADRFDL 182
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ SMGM+ DFE+A+ GAT VRIG +F
Sbjct: 183 PERSMGMSGDFEVAVEEGATLVRIGRALF 211
>gi|218295591|ref|ZP_03496387.1| alanine racemase domain protein [Thermus aquaticus Y51MC23]
gi|218243750|gb|EED10277.1| alanine racemase domain protein [Thermus aquaticus Y51MC23]
Length = 211
Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 100/198 (50%), Gaps = 8/198 (4%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFI 79
A R V LVAV+K ++IR L G E+++QEA KK L+ EW + +
Sbjct: 17 AGRDPKEVRLVAVTKGRSVEEIRERVLRYGAFPLGESRVQEALKKMELLQAEWHL----V 72
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G LQ NK ++ F +I ++ + A L K L V ++VN G E QK G +
Sbjct: 73 GPLQRNK-AKFAPRFHLIHSLDSLRLAEALEGVGAKAGMRLRVLVEVNLGREPQKHGFLE 131
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPP--AMGNPKPHFYLLSEIARECKLTKLSMGMTRDF 197
+ + + R+ L V G M +PP G +P F LS +A L + SMGM++D+
Sbjct: 132 EELPEALARVREMPHLEVLGFMTVPPMGPEGVVRPIFRRLSLLADRFGLPERSMGMSQDY 191
Query: 198 ELAIASGATSVRIGSGIF 215
E A+ GAT VR+G +F
Sbjct: 192 EWAVEEGATMVRVGRALF 209
>gi|261839792|gb|ACX99557.1| hypothetical protein HPKB_0988 [Helicobacter pylori 52]
gi|332673860|gb|AEE70677.1| YggS family pyridoxal phosphate enzyme [Helicobacter pylori 83]
Length = 222
Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 115/225 (51%), Gaps = 36/225 (16%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-- 70
KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K K L
Sbjct: 14 KIEKARIAYSRHH-IVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKIKMHSLEHLP 72
Query: 71 -EWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV----YI 124
EW IGSLQ NK++ ++SL ++ ++ K L+L++ K+ L V +
Sbjct: 73 LEW----HMIGSLQENKINALLSLKPALLHSLDSLK----LALKIEKRCEMLGVNLNALL 124
Query: 125 QVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
QVN+ YE KSG+MP +T + + + +L ++GLMCI + K EI +
Sbjct: 125 QVNSAYEESKSGVMPEETLEIYSQISETCKRLKLKGLMCIGAHADDEK-------EIEKS 177
Query: 184 CKLTK-----------LSMGMTRDFELAIASGATSVRIGSGIFGE 217
TK LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 178 FITTKKLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|56419666|ref|YP_146984.1| hypothetical protein GK1131 [Geobacillus kaustophilus HTA426]
gi|56379508|dbj|BAD75416.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 224
Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L +++IE + R V +VAV+K VD+++ L G EN+ +
Sbjct: 1 MTVRDNLAAIRREIEAACARVGRDPAGVRIVAVTKYVDAERAMEVLDAGIADLGENRSDQ 60
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS- 117
K I + W FIG+LQS KV +I+ D I ++ R L+ E+ K++
Sbjct: 61 LIEKHARIGNQATW----HFIGTLQSRKVKDIIDKVDYIHSLDRLS----LAKEIEKRAV 112
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK------ 171
R + ++QVN E+ K G+ P +T F+ R ++ V GLM + P +
Sbjct: 113 RPVKCFVQVNVSGEVTKHGLAPEETIPFIEQLRAFSRIEVVGLMTMAPHTDDEAVLRACF 172
Query: 172 PHFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+L E + + T+LSMGM+ D+ +AI GAT VRIGS + G
Sbjct: 173 RRLRMLKERVQALGMAHAPCTELSMGMSNDYTIAIEEGATFVRIGSALVG 222
>gi|311029941|ref|ZP_07708031.1| hypothetical protein Bm3-1_05186 [Bacillus sp. m3-13]
Length = 228
Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 111/235 (47%), Gaps = 34/235 (14%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L +Q I N+ R + V ++AV+K V +++ + A++ G EN+
Sbjct: 5 SVESNLSEIQQNIRNACHNVNRSVEEVKIIAVTKYVSTERAQEAINTGVKHLGENRDDGF 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RFL 120
KKW + E +IG+LQS KV I+ D I ++ R+ L+ E+ K++ + +
Sbjct: 65 LKKWDAISNE--ATWHYIGTLQSKKVKNIIGKVDYIHSLDRKS----LAEEIHKRAEKAV 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQVN E K G+ P + FV + + + GLM + P F E+
Sbjct: 119 KCFIQVNVSGEDSKHGLAPEEVPGFVKTISDLHNIQIVGLMTMAP--------FTEEEEL 170
Query: 181 AREC-------------------KLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
R C T+LSMGM+ D+++AI GAT +RIGS + G
Sbjct: 171 LRNCFRGLKSLQQEIQSMNLPFAPCTELSMGMSNDYKIAIEEGATFIRIGSALVG 225
>gi|295102832|emb|CBL00377.1| pyridoxal phosphate enzyme, YggS family [Faecalibacterium
prausnitzii L2-6]
Length = 239
Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 107/229 (46%), Gaps = 24/229 (10%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
++ ++K+ +A A R V L A K + + + + +F EN +QE
Sbjct: 13 VEAIREKMAAAARAAGRDPAGVQLCAACKTRTADTVAASAALAIDVFGENHVQE------ 66
Query: 67 PLRKEWDVQL------RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
L +D FIG LQ+NK+ +++ +I++V E + + E K
Sbjct: 67 -LCANYDAGAYCGKPSHFIGHLQTNKIKKVLGRASLIQSVDSEHLLAAIEKEAAKTGIVQ 125
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V ++VN G E KSG+ P Q + + + V+GLM IPP + + L+++
Sbjct: 126 DVLLEVNIGGEESKSGVSPEQLWPLLDAAAAEEHIRVKGLMAIPPVNDDDAQNRRYLAQV 185
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K+ LSMGM+ DFE AI GAT VRIG+ I+GER
Sbjct: 186 YKLFVQAGERGYQNVKMETLSMGMSGDFENAIREGATLVRIGTAIYGER 234
>gi|148550169|ref|YP_001270271.1| alanine racemase domain-containing protein [Pseudomonas putida F1]
gi|148514227|gb|ABQ81087.1| alanine racemase domain protein [Pseudomonas putida F1]
Length = 228
Score = 95.1 bits (235), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 93/203 (45%), Gaps = 10/203 (4%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL--RFIG 80
R SV L+AVSK + IR + G F EN LQEA K L D+ L FIG
Sbjct: 24 RDPASVQLLAVSKTKPASAIREIHAAGVRDFGENYLQEALTKQQALS---DLPLIWHFIG 80
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK I FD + +V R K A LS + L + +QVN E KSG P
Sbjct: 81 PIQSNKTKAIAEHFDWVHSVDRLKIAQRLSEQRPAGLAPLNICLQVNVSGEDSKSGCTPA 140
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLSEIARECK--LTKLSMGMTR 195
L + GLM IP + F L ++ L LSMGM+
Sbjct: 141 DLPALAKAVAALPNLRLRGLMAIPKPTEDRATQEAAFASLRKLQEGLGFGLDTLSMGMSH 200
Query: 196 DFELAIASGATSVRIGSGIFGER 218
D E AIA GAT VRIG+ +FG R
Sbjct: 201 DLEAAIAQGATWVRIGTALFGAR 223
>gi|291276586|ref|YP_003516358.1| hypothetical protein HMU03530 [Helicobacter mustelae 12198]
gi|290963780|emb|CBG39615.1| Putative hypothetical protein [Helicobacter mustelae 12198]
Length = 224
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 118/236 (50%), Gaps = 42/236 (17%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L NKL QKIE + I R + + LVAVSK +KI CGQ F ENK+Q+ +
Sbjct: 4 LKNKLDFVLQKIERARIAYSRHQ-IIKLVAVSKYSGVEKIAELYHCGQRAFGENKVQDLR 62
Query: 63 KKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK---- 115
+K LR EW FIG+LQ NK++ ++ + S+ SLE+ K
Sbjct: 63 EKQQHLRSFPLEW----HFIGNLQRNKINALLESRPFL-------IHSVDSLELAKEINK 111
Query: 116 --QSRFLPVYIQVNTGYEIQKSGIMPNQT----KDFVILCRQKYQLNVEGLMC------- 162
Q++ + + +QVN+ E K+GI P + + C+ L +EGLMC
Sbjct: 112 RAQNQVVRILLQVNSAREEGKNGISPEECIEVYDQILSTCKN---LKLEGLMCMGAHSID 168
Query: 163 ---IPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
I + G K F L + R K+ LSMGM+ D+E+AI+ GA +RIGS IF
Sbjct: 169 SKKIEQSFGITKDLFDRLQD--RGAKI--LSMGMSGDYEIAISYGANLLRIGSEIF 220
>gi|262369111|ref|ZP_06062440.1| YggS family pyridoxal phosphate enzyme [Acinetobacter johnsonii
SH046]
gi|262316789|gb|EEY97827.1| YggS family pyridoxal phosphate enzyme [Acinetobacter johnsonii
SH046]
Length = 234
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 108/222 (48%), Gaps = 7/222 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L N Q +I+ + ++ R +SV L+AVSK S+ +R + GQ F EN LQEA
Sbjct: 9 LQNSRQHVLSQIQQACEISGRDVESVELLAVSKTHPSEVLRDMYAFGQRAFGENYLQEAL 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K I ++ ++ FIG +Q NK + F + V R A LS + + L +
Sbjct: 69 QK-IEALQDLGIEWHFIGHVQRNKTKHLAEQFAWVHGVDRLIIAERLSAQRLITQPPLNL 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP-----AMGNPKPHFYLL 177
+QVN + K G P++ + V Q + + GLM IP A K F +
Sbjct: 128 CLQVNIDGQDSKDGCQPDEVAELVKSISQLPHIKLRGLMVIPAPNNTQAFKAAKVLFDQV 187
Query: 178 SEI-ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ LSMGM+ D AIA+G+T VR+G+ +FG R
Sbjct: 188 KELHVHPEDWDTLSMGMSGDMVDAIAAGSTMVRVGTALFGAR 229
>gi|254568594|ref|XP_002491407.1| Single-domain racemase, possibly non-specific due to the lack of
the second domain [Pichia pastoris GS115]
gi|238031204|emb|CAY69127.1| Single-domain racemase, possibly non-specific due to the lack of
the second domain [Pichia pastoris GS115]
Length = 269
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 104/211 (49%), Gaps = 25/211 (11%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V+LV VSK+ S I G F EN +QE K L K D++ FIG LQ+NK
Sbjct: 60 VNLVCVSKLKPSSDIMALYDAGFRHFGENYVQELVSKAQELPK--DIKWHFIGGLQTNKC 117
Query: 88 SEIVSLFD---VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
++ + D +ET+ K A+ L+ + V+IQVNT E QKSGI + D
Sbjct: 118 KDLATRIDNLYAVETIDSIKKANKLNSSRDASKPKINVFIQVNTSGEEQKSGI--SSYDD 175
Query: 145 FVILCR----QKYQLNVEGLMCI-----PPAMGNPKPHFYLLSEIARECKLT-------K 188
+ L + L ++GLM I A G F L+ A KL +
Sbjct: 176 LLALAKVIKNDCPNLTLKGLMTIGSIQQSTAAGERNKDFDQLT--AHNEKLESDLGTTLE 233
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
LSMGM+ DFE AI G+TSVR+GS IFG RP
Sbjct: 234 LSMGMSSDFEQAIRQGSTSVRVGSSIFGARP 264
>gi|320011291|gb|ADW06141.1| alanine racemase domain protein [Streptomyces flavogriseus ATCC
33331]
Length = 239
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I ++ A R ++ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAENLAQVEERIASACASAGREREDVTLIVVTKTYPASDVRILYELGVRQVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + F+G LQ+NKV + V+++V R K + LS ++ R L
Sbjct: 68 PKAAAC-ADLSLTWHFVGQLQTNKVRSVAGYAGVVQSVDRVKLVTALSAAAVRGGRELGC 126
Query: 123 YIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AMGNPKPHF 174
IQV +G + G+ P+ ++ + L ++GLM + P G + F
Sbjct: 127 LIQVALDAESGERGDRGGVAPDAIEELAASVEEAEGLRLDGLMTVAPLAGPYAGRQRAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L E + + +S GM+ D E AIA+GAT VR+G+ + G RP
Sbjct: 187 DRLVEFSSRLRGNHPAANMVSAGMSADLEDAIAAGATHVRVGTAVLGVRP 236
>gi|224476290|ref|YP_002633896.1| hypothetical protein Sca_0801 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420897|emb|CAL27711.1| Predicted enzyme with a TIM-barrel fold [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 224
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 103/201 (51%), Gaps = 20/201 (9%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQ--EAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+++AV+K V ++ + A G F EN+L+ +AKK+ +P D + FIG+LQS K
Sbjct: 28 NVIAVTKYVTIERAKEAYDAGIRNFGENRLEGFKAKKEALP----DDAIMHFIGTLQSRK 83
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V E+V D + + R+ A ++ + +R + ++Q+N E K GI N DF+
Sbjct: 84 VKEVVDDIDYLHALDRKSLAKEINK---RATRPVNCFVQINVSGEESKHGIALNDVNDFI 140
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK--------LTKLSMGMTR 195
+ Q + V GLM + P + + F L E E T+LSMGM+
Sbjct: 141 EMLSQYENIRVVGLMTMAPFTEDEAQIRQVFKQLREKRDEINKLNLEYAPCTELSMGMSN 200
Query: 196 DFELAIASGATSVRIGSGIFG 216
D+E+A GAT VRIG+ + G
Sbjct: 201 DYEIATEEGATYVRIGTKLVG 221
>gi|212551104|ref|YP_002309421.1| hypothetical protein CFPG_747 [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212549342|dbj|BAG84010.1| conserved hypothetical protein [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 234
Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 112/220 (50%), Gaps = 16/220 (7%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD 73
I+ + K K+ V LVAVSK +S+ I + GQ +F ENK++E K+ L K D
Sbjct: 4 IDRLNYIRKHLKEGVRLVAVSKFQNSESILEVYNAGQRLFGENKVKELYHKYQQLPK--D 61
Query: 74 VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ 133
++ FIG LQ+NK++ +V D I ++ + + + +K +R + V +Q++ E+
Sbjct: 62 IEWHFIGHLQTNKLNYVVPFVDTIHSIDSFRLLNKTNYCALKYNRRIKVLLQMHIAKEVN 121
Query: 134 KSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEIARECK--- 185
K G + ++ + L + +++ GLM + N F LS + K
Sbjct: 122 KFGFSFGEVENLLSDKLWKTFKNVDIIGLMGMASFTENQDQITKEFSSLSNFFLKLKNQY 181
Query: 186 ------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+LSMGM+ D+ LAI G+T VRIGS IFG++
Sbjct: 182 FFDKKNFKELSMGMSGDYLLAIKQGSTMVRIGSSIFGKKT 221
>gi|321261900|ref|XP_003195669.1| hypothetical protein CGB_H2200W [Cryptococcus gattii WM276]
gi|317462143|gb|ADV23882.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 264
Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 128/254 (50%), Gaps = 46/254 (18%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + + ++A +P+ LVAVSK+ + I+ G F EN +QE
Sbjct: 17 LKENIAAVQYDVAHAAGAGAKPR----LVAVSKLKPASDIKALYDAGHRHFGENYIQEMV 72
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLL--SLEMIKQS 117
K L + D++ FIGSLQSNK + + +LF ++ET+S K A LL SL + S
Sbjct: 73 DKAAVLPE--DIKWHFIGSLQSNKSKLAASVPNLF-ILETLSSIKVADLLQKSLPPSRTS 129
Query: 118 RFLPVYIQVNTGYEIQKSGI--MPNQTKD---------FVILCRQKYQLNVEGLMCIPPA 166
+ L VY+QVNT E KSG+ +P+ T D V + + L + G+M I
Sbjct: 130 K-LNVYLQVNTSGEDSKSGLSPLPSSTADSKSTELVDLAVHVIEKCPGLKLLGIMTIGSW 188
Query: 167 MGN-----PKPHFYLL----SEIA------------RECKLTKLSMGMTRDFELAIASGA 205
+ P P F L +E+A RE +L +LSMGM+ DF AI G+
Sbjct: 189 DASHDPTKPNPDFECLKRTRAELAKVLAEKGVPAAPREDEL-ELSMGMSADFVQAIKEGS 247
Query: 206 TSVRIGSGIFGERP 219
+SVR+G+ IFGERP
Sbjct: 248 SSVRVGTRIFGERP 261
>gi|221202249|ref|ZP_03575283.1| pyridoxal phosphate enzyme, YggS family [Burkholderia multivorans
CGD2M]
gi|221209162|ref|ZP_03582155.1| pyridoxal phosphate enzyme, YggS family [Burkholderia multivorans
CGD2]
gi|221170980|gb|EEE03434.1| pyridoxal phosphate enzyme, YggS family [Burkholderia multivorans
CGD2]
gi|221177823|gb|EEE10236.1| pyridoxal phosphate enzyme, YggS family [Burkholderia multivorans
CGD2M]
Length = 235
Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 98/205 (47%), Gaps = 17/205 (8%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGS 81
SVSL+AVSK + +R A + GQ F EN +QE+ K L EW FIG
Sbjct: 31 SVSLLAVSKTFPADAVRAAHAAGQRAFGENYVQESIDKIDALADLRASLEW----HFIGP 86
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQSNK + +D + ++ R K A L+ + L V +QVN E KSG+ P +
Sbjct: 87 LQSNKTRAVAERYDWVHSIDRLKIAQRLAEQRPAHLPPLNVCVQVNISGEASKSGVAPAE 146
Query: 142 TKDFVILCRQKYQLNVEGLMCIP-PAM---GNPKPHFYLLSEI----ARECKLTKLSMGM 193
+ L + GLM IP PA PH L + A L LSMGM
Sbjct: 147 VAEVARAVAALPSLRLRGLMAIPEPAADLDAQRVPHRALRTLFDALRADGLPLDTLSMGM 206
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D E A+ GAT VR+G+ IFG R
Sbjct: 207 SADLEAAVLEGATIVRVGTAIFGAR 231
>gi|153953817|ref|YP_001394582.1| hypothetical protein CKL_1192 [Clostridium kluyveri DSM 555]
gi|219854433|ref|YP_002471555.1| hypothetical protein CKR_1090 [Clostridium kluyveri NBRC 12016]
gi|146346698|gb|EDK33234.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219568157|dbj|BAH06141.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 222
Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 72/205 (35%), Positives = 105/205 (51%), Gaps = 18/205 (8%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQS 84
+V LVAVSK K I+ G F ENK+QE +K+ +P D++ FIG LQ
Sbjct: 18 NVILVAVSKTKSIKDIQKVYDLGIRDFGENKVQEFVSKEPNLP----EDIRWHFIGHLQR 73
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV IV ++I ++ K L ++ V IQ+N G E K+GI ++
Sbjct: 74 NKVKYIVGKVELIHSLDGVKLLQELEKHYKAKNLTANVLIQINIGCEENKTGIYLENLEE 133
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECKLTK--------LSMGM 193
+ C + V+GLM + P +G+ K +F + I ++ K K LSMGM
Sbjct: 134 LIEACELCTNVKVKGLMSVIP-IGDEKSCRNYFRKMKYIFQDLKNKKFTNISMDILSMGM 192
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
T D+ +A+ G+T VRIG GIFG+R
Sbjct: 193 THDYGVAVEEGSTLVRIGEGIFGKR 217
>gi|50122548|ref|YP_051715.1| putative alanine racemase [Pectobacterium atrosepticum SCRI1043]
gi|49613074|emb|CAG76525.1| putative alanine racemase [Pectobacterium atrosepticum SCRI1043]
Length = 237
Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 99/219 (45%), Gaps = 23/219 (10%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW---------IP 67
+A R + ++L+AVSK I A++ GQ F EN +QE +K P
Sbjct: 18 AATHCARAPEEITLLAVSKTKPVSAIEEAIAAGQRAFGENYVQEGVEKIHYFQENQPNTP 77
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
L EW FIG LQSNK + FD TV R + A LS + L V +Q+N
Sbjct: 78 L--EW----HFIGPLQSNKSRLVAENFDWFHTVDRLRIAQRLSEQRPTTLPPLNVLLQIN 131
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------ 181
E KSGIM ++ + L + GLM IP + + + ++
Sbjct: 132 ISNEPSKSGIMVDELTELAASVAALPNLRLRGLMAIPAPETDHERQLAVFKQMTALFQTL 191
Query: 182 --RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGMT D AI +G+T VRIG+ +FG R
Sbjct: 192 SVNYPHIDTLSMGMTDDMRAAITAGSTLVRIGTAVFGAR 230
>gi|291167100|gb|EFE29146.1| pyridoxal phosphate enzyme, YggS family [Filifactor alocis ATCC
35896]
Length = 230
Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 103/208 (49%), Gaps = 18/208 (8%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW--IPLRKEWDVQLRFIGSL 82
K V+LVAV+K +D ++ L G F ENK+QE K+ P +W IG+L
Sbjct: 24 KQEVTLVAVTKTIDVGPMKEVLKEGVSCFGENKVQEILSKYEKFPDTVKW----HLIGTL 79
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
QSNKV I+ ++I ++ R A + + + IQVN E K G+ +
Sbjct: 80 QSNKVKYIIDKVEMIHSLDRISLAKEIDRRAKEIGVVMKCLIQVNISQEESKHGLDKAEA 139
Query: 143 KDFVILCRQKY-QLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK--------LTKLS 190
F+ Q + + V GLM + P + + +P+F L + E K + LS
Sbjct: 140 LKFIEEVAQNFSHIQVLGLMGMAPFVEDAEEARPYFRQLKGLFEEAKNLNLGTGQMKYLS 199
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGMT D+ +AI G+ VR+G+GIFG+R
Sbjct: 200 MGMTNDYTVAIEEGSNMVRVGTGIFGKR 227
>gi|74316686|ref|YP_314426.1| hypothetical protein Tbd_0668 [Thiobacillus denitrificans ATCC
25259]
gi|74056181|gb|AAZ96621.1| Protein of unknown function UPF0001 [Thiobacillus denitrificans
ATCC 25259]
Length = 236
Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 100/225 (44%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L ++ +A+ R +V+L+AVSK D +R G F EN LQEA
Sbjct: 4 TIAARLLTLHDRLARAALDCARDPRAVTLLAVSKTYDHNAVRNIARLGHREFGENYLQEA 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + D+ FIG +Q NK + F V R A LS + + L
Sbjct: 64 LDKQRAL-ADLDLVWHFIGPIQRNKTRRVAENFSWAHCVDRLCIAERLSEQRPADAPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V ++VN E K G+ + +L + GLM IP + + +
Sbjct: 123 VCLEVNVSGEPSKGGVPADAAIALAKQVSALPRLRLRGLMAIPAPTRDRACQRAAFARVR 182
Query: 182 RECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
R + K LSMGM+ DFE AIA GAT VRIG+ IFG R
Sbjct: 183 RLFEALKAHGLPVDTLSMGMSGDFEAAIAEGATIVRIGTAIFGPR 227
>gi|317012832|gb|ADU83440.1| hypothetical protein HPLT_05240 [Helicobacter pylori Lithuania75]
Length = 222
Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 109/203 (53%), Gaps = 21/203 (10%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---EWDVQLRFIGSLQS 84
V +VAVSK + I+ +C Q F EN++Q+ K K L EW IGSLQ
Sbjct: 28 VKIVAVSKNASPEAIQHYYNCSQRAFGENRVQDLKTKMHSLEHLPLEW----HMIGSLQE 83
Query: 85 NKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV----YIQVNTGYEIQKSGIMP 139
NK++ ++SL ++ ++ K L+L + K+ L V +QVN+ YE KSG+MP
Sbjct: 84 NKINALLSLKPALLHSLDSLK----LALNIEKRCEILGVNLNALLQVNSAYEESKSGVMP 139
Query: 140 NQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECK-LTKLSMGMT 194
+T + + + +L ++GLMCI + K F ++ + K + LSMGM+
Sbjct: 140 EETLEIYSQISETCKRLKLKGLMCIGAHADDEKEIEKSFITTKKLFDQIKNASVLSMGMS 199
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
DFELAIA GA +RIGS +F E
Sbjct: 200 DDFELAIACGANLLRIGSFLFKE 222
>gi|325275650|ref|ZP_08141548.1| alanine racemase domain protein [Pseudomonas sp. TJI-51]
gi|324099216|gb|EGB97164.1| alanine racemase domain protein [Pseudomonas sp. TJI-51]
Length = 231
Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 92/203 (45%), Gaps = 10/203 (4%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL--RFIG 80
R SV L+AVSK + IR + G F EN LQEA K L D+ L FIG
Sbjct: 24 REPASVQLLAVSKTKPAAAIRELYAAGVCDFGENYLQEALTKQQALG---DLPLIWHFIG 80
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QSNK I FD + +V R K A LS + L + +QVN E KSG
Sbjct: 81 PIQSNKTKAIAEHFDWVHSVDRLKIAQRLSEQRPAGLAPLNICLQVNVSGEDSKSGCAAA 140
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-----ARECKLTKLSMGMTR 195
+ L + GLM IP + + + + L LSMGM+
Sbjct: 141 ELPALAKAVAALPNLRLRGLMAIPEPTDDRAAQEAAFASLRNLLEQQHLGLDTLSMGMSH 200
Query: 196 DFELAIASGATSVRIGSGIFGER 218
D E AIA GAT VRIG+ +FG R
Sbjct: 201 DLEAAIAQGATWVRIGTALFGAR 223
>gi|258646837|ref|ZP_05734306.1| pyridoxal phosphate enzyme, YggS family [Dialister invisus DSM
15470]
gi|260404274|gb|EEW97821.1| pyridoxal phosphate enzyme, YggS family [Dialister invisus DSM
15470]
Length = 236
Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 19/230 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRP-KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
++ KL+V K++I +A A+ P + V+LVAV+K + + L G EN++QE
Sbjct: 3 AIEEKLEVVKKRI--AAAKARSPYRQDVTLVAVTKFHPLEDMEEVLRLGVKEVGENRVQE 60
Query: 61 AKKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ K L+ W++Q G LQ NKV + V+ D+I++V + + + +
Sbjct: 61 LEDKRSRLKMPVVWNLQ----GHLQKNKVKKAVAAADLIQSVDSVEIMEEIDKRAGQAGK 116
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFY 175
V ++ N E K G+ P + + V+GLMC+ P + + +P F
Sbjct: 117 VQDVLLEFNISGETSKYGLPPESLDEAAAKAGMLPHIRVKGLMCMAPMVEDVEMTRPVFR 176
Query: 176 LLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ K ++ LSMGMTRDFE AI GAT VR+G+ IFGER
Sbjct: 177 RAHEMWEVLKTYFPKGQVSVLSMGMTRDFETAIEEGATMVRVGTAIFGER 226
>gi|319787656|ref|YP_004147131.1| alanine racemase domain protein [Pseudoxanthomonas suwonensis 11-1]
gi|317466168|gb|ADV27900.1| alanine racemase domain protein [Pseudoxanthomonas suwonensis 11-1]
Length = 253
Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 107/224 (47%), Gaps = 12/224 (5%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+LQ +IE +A A RP L+AVSK+ + + + GQ F EN +QE K
Sbjct: 30 RLQDVLARIEAAAKAAGRP--CPRLLAVSKLQPAGAVAALAAAGQRAFGENYVQEGAAKR 87
Query: 66 IPLRKEWDVQLRF--IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
L D L + IG LQSNK + F + +V R L+ + L V
Sbjct: 88 QALDPALDAGLEWHLIGHLQSNKAAVAARTFGWVHSVDRTSVIDALAARRDPAAAPLNVL 147
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVN E K G P + + + +L + GLM IP +P +P F + ++
Sbjct: 148 LQVNVEGEEGKGGCRPGEVEALAAAVAAQPRLALRGLMAIPVPHPDPEDRRPAFRAMKQL 207
Query: 181 -----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
AR + LSMGM+ DF +AIA GAT VRIG+ +FG RP
Sbjct: 208 FDALAARHPGVDTLSMGMSDDFAVAIAEGATLVRIGTALFGPRP 251
>gi|54023739|ref|YP_117981.1| hypothetical protein nfa17710 [Nocardia farcinica IFM 10152]
gi|54015247|dbj|BAD56617.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 251
Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 102/228 (44%), Gaps = 11/228 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +IE + + R DSV ++ V+K ++ + + G F E++ QEA
Sbjct: 20 LSANLDALLARIEAACRASGRAPDSVRMLPVTKFFPARDVAILHDLGLREFGESREQEAS 79
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL------SLEMIKQ 116
K L + IG LQ NK + + +V E+ A+ L +L ++
Sbjct: 80 AKVAELSGLDGIAWHMIGRLQRNKAKVVARWAHTVHSVDSERLATALDRGACAALAAGER 139
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ + V +QV+ + + G++P + L + GLM IPP P F L
Sbjct: 140 AEPVRVLVQVSLDADPARGGVVPAELDALADRIAAAEGLQLAGLMAIPPLDAEPDSAFAL 199
Query: 177 LSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +AR +LS GM+ D E AIA G+T VR+G+ + G RP
Sbjct: 200 LETLHTRILARHPGARELSAGMSGDLESAIAHGSTCVRVGTALMGARP 247
>gi|86131768|ref|ZP_01050365.1| alanine racemase domain-containing protein [Dokdonia donghaensis
MED134]
gi|85817590|gb|EAQ38764.1| alanine racemase domain-containing protein [Dokdonia donghaensis
MED134]
Length = 215
Score = 94.7 bits (234), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 102/203 (50%), Gaps = 17/203 (8%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V+LVAVSK + A GQ IF ENK+QE +KW + K D+Q IG +Q+NKV
Sbjct: 18 VTLVAVSKTKPVADLMEAYETGQRIFGENKIQEMTEKWEEMPK--DIQWHMIGHVQTNKV 75
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
+ ++ V R K ++ + + R + V IQV E K G+ D +
Sbjct: 76 KFMAPFVSLVHAVDRIKLLKEINKQALANDRVIDVLIQVKIAREDSKFGM---AVDDVIS 132
Query: 148 LCRQKY-----QLNVEGLMCIPPAMGNPK---PHFYLLSEIA---RE-CKLTKLSMGMTR 195
L + K +NV GLM + + + F LL + RE LT LS GM+
Sbjct: 133 LFQSKELDNYPNVNVVGLMGMATFTDDQRQVQAEFELLEGLFLRFRESANLTILSSGMSG 192
Query: 196 DFELAIASGATSVRIGSGIFGER 218
D++LAI +G+T +R+GS IFG R
Sbjct: 193 DYKLAIDNGSTMIRVGSSIFGAR 215
>gi|225444313|ref|XP_002263767.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 245
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 110/224 (49%), Gaps = 22/224 (9%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
+++ +A + R + +VAVSK IR G F EN +QE +K L +
Sbjct: 19 HRVQQAAERSGRGPHQIRVVAVSKTKSVSLIREVYDSGHRCFGENYVQEIIEKAPQLPE- 77
Query: 72 WDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQVN 127
D++ FIG+LQSNKV + V V+ETV EK A L + R L V +QVN
Sbjct: 78 -DIEWHFIGNLQSNKVKPLLTGVPNLAVVETVDDEKIADRLDRMVATIGRKPLKVMVQVN 136
Query: 128 TGYEIQKSGIMPNQ----TKDFVILCRQKYQLNVEGLMCIPPAMGNPKP-HFYLL----S 178
T E KSG+ P K + C L GLM I P +F L S
Sbjct: 137 TSGEESKSGVDPAACVELVKHVALGCPN---LEFGGLMTIGMLDYTSTPENFKTLANCRS 193
Query: 179 EIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + +T+ LSMGM+ DFELAI G+T+VRIGS IFG R
Sbjct: 194 EVCKSLGITEEQCELSMGMSGDFELAIEMGSTNVRIGSTIFGAR 237
>gi|270296423|ref|ZP_06202623.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. D20]
gi|270273827|gb|EFA19689.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. D20]
Length = 221
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 109/214 (50%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+L++ P + V LVAVSK ++ I A GQ +F E+K+QE K+ L K D++ F
Sbjct: 9 VLSELP-EKVRLVAVSKFHPNEAIEEAYRAGQRVFGESKVQEMTAKYKSLPK--DIEWHF 65
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK+ IV +I + K + ++ + K + + +Q++ E K G
Sbjct: 66 IGHLQTNKIKYIVPYVALIHGIDSYKLLAEVNKQAAKAEKTVNCLLQLHIAREETKFGFS 125
Query: 139 PNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-------- 185
++ ++ + R+ + + GLM + N K F LS E K
Sbjct: 126 FDECREMLAAGEWRELKHIRICGLMGMATNTDNDEQIKTEFCSLSSFFNEVKAKWFADAE 185
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AIA+G+T +R+GS IFGER
Sbjct: 186 SFRELSMGMSHDYHEAIAAGSTLIRVGSKIFGER 219
>gi|327284097|ref|XP_003226775.1| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like [Anolis carolinensis]
Length = 276
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 126/242 (52%), Gaps = 28/242 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
LG L+ +++++ + A+RP+ LVAVSK ++ + A + GQ F EN
Sbjct: 11 GLGAALRTVREQVQQAT--ARRPQSLPAIQPRLVAVSKTKPAEMVIEAYNLGQRSFGENY 68
Query: 58 LQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLE 112
+QE +K R D++ FIG LQ N V++++ + ++ +ETV K A ++
Sbjct: 69 VQELLEKASDSRILSSCPDIKWHFIGHLQKNNVNKLIGVPNLFMLETVDSLKLADRVNAS 128
Query: 113 MIKQ--SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ-LNVEGLMCIPP---- 165
K+ S L + +Q+NT E K G+ P +T V QK L GLM I
Sbjct: 129 WQKKGCSEKLKIMVQINTSGEDSKHGLPPGETVTTVAHILQKCPGLEFVGLMTIGSFGHD 188
Query: 166 -AMGNPKPHFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+MG P P F +L + +E KL +LSMGM+ DF+ AI G+T+VRIGS IFG
Sbjct: 189 LSMG-PNPDFQMLISLRQEMCDKLNIPIEKVELSMGMSTDFQHAIEVGSTNVRIGSTIFG 247
Query: 217 ER 218
ER
Sbjct: 248 ER 249
>gi|251778603|ref|ZP_04821523.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|243082918|gb|EES48808.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 224
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 106/211 (50%), Gaps = 17/211 (8%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGS 81
PK+ V L+AVSK + ++ A G F ENK+QE +K++ +P D++ IG+
Sbjct: 15 PKN-VELLAVSKTKPIEDLKQAYEAGIRDFGENKVQELVSKEEVLP----KDIRWHLIGN 69
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQ+NKV +V +I ++S K + + K + V IQ+N G E KSGI+
Sbjct: 70 LQTNKVKYLVDKVYLIHSLSSIKLLNEIERVFEKNNTVANVLIQINIGREESKSGILKEG 129
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMG--NPKPHF--------YLLSEIARECKLTKLSM 191
+ + + +G+M I P N + +F YL + K+ LSM
Sbjct: 130 LQGLIEAIETCNYVLAKGIMVIIPKGDEKNNRKYFKETKEIFDYLKVRKYKNIKMEVLSM 189
Query: 192 GMTRDFELAIASGATSVRIGSGIFGERPCQT 222
GMT DF AI G+T VRIG GIFGER T
Sbjct: 190 GMTHDFNEAIEEGSTLVRIGQGIFGERNYST 220
>gi|295135068|ref|YP_003585744.1| alanine racemase [Zunongwangia profunda SM-A87]
gi|294983083|gb|ADF53548.1| alanine racemase [Zunongwangia profunda SM-A87]
Length = 219
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 16/205 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
D+V LVA+SK ++ + A GQ IF ENK+QE KW L K D++ +G +Q N
Sbjct: 16 DTVDLVAISKTKPNEDLMEAYEVGQRIFGENKIQEMTDKWEALPK--DIEWHMVGHVQRN 73
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV + +I V K ++ + K R + +Q+ E K GI + ++
Sbjct: 74 KVKYMAPYVGLIHAVDSLKLLKEINKQAKKHDRVIRCLLQIKIAEEDSKFGISAGEAEE- 132
Query: 146 VILCRQKYQ----LNVEGLMCIPPAMGNPK---PHFYLLSEIARECK-----LTKLSMGM 193
IL + Y+ + V GLM + N + F L + ++ + + +LSMGM
Sbjct: 133 -ILQSETYKTFENVAVVGLMGMATHTDNDEKVAEEFDYLHSVFKDFRVKYPAIKELSMGM 191
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D+++A+ G+T VRIGS IFG R
Sbjct: 192 SGDYKIAVKHGSTMVRIGSSIFGAR 216
>gi|308183162|ref|YP_003927289.1| hypothetical protein HPPC_05130 [Helicobacter pylori PeCan4]
gi|308065347|gb|ADO07239.1| hypothetical protein HPPC_05130 [Helicobacter pylori PeCan4]
Length = 222
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 118/228 (51%), Gaps = 42/228 (18%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK-----WIP 67
KIE + I R V +VAVSK + I+ +C Q F EN++Q+ K K +P
Sbjct: 14 KIEKARIAYSRHH-IVKIVAVSKNASLEAIQHYYNCSQRAFGENRVQDLKMKAQSLDHLP 72
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV---- 122
L EW IGSLQ NK++ ++SL ++ ++ K L+L++ K+ L V
Sbjct: 73 L--EW----HMIGSLQENKINALLSLKPALLHSLDSLK----LALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ--KYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+QVN+ YE KSG+MP +T + + KY L ++GLMCI + + K EI
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEVYSQISETCKY-LKLKGLMCIGAHVDDEK-------EI 174
Query: 181 ARECKLTK-----------LSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ TK LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 175 EKSFITTKKLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|261346263|ref|ZP_05973907.1| pyridoxal phosphate enzyme, YggS family [Providencia rustigianii
DSM 4541]
gi|282565572|gb|EFB71107.1| pyridoxal phosphate enzyme, YggS family [Providencia rustigianii
DSM 4541]
Length = 230
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 102/226 (45%), Gaps = 8/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ N + +I +A R ++L+AVSK + I A+ G F EN +QE
Sbjct: 1 MTIQNNIAEVTARINLAATECHRSPQEITLLAVSKTKPCEAILEAIDAGLRQFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D+ FIG LQSNK + FD T+ R K A L+ + + L
Sbjct: 61 GVEKIQYFADRTDLVWHFIGPLQSNKSRLVAEHFDWFHTLDRAKIAQRLNEQRPQNKAPL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQ+N E KSGI Q L + GLM IP + + F +
Sbjct: 121 NVLIQINISDENSKSGIKLEDVDALAAQVAQLPNLVLRGLMTIPAPETDYERQCAAFRQM 180
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ K + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 EQAFQQLKNNYPTVDTLSMGMTDDMAAAIHCGSTLVRIGTAIFGAR 226
>gi|325524417|gb|EGD02494.1| hypothetical protein B1M_21228 [Burkholderia sp. TJI49]
Length = 198
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 90/198 (45%), Gaps = 17/198 (8%)
Query: 34 SKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGSLQSNKVS 88
SK + +R A + GQ F EN +QE+ K L EW FIG LQSNK
Sbjct: 1 SKPFPADDVRAAHAAGQRAFGENYVQESVDKIESLADLRASLEW----HFIGPLQSNKTR 56
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
+ FD + +V R K A L+ + L V +QVN E KSG+ P D
Sbjct: 57 AVAERFDWVHSVDRLKIAQRLAEQRPAHLPPLNVCVQVNISGEASKSGVAPADVADVARA 116
Query: 149 CRQKYQLNVEGLMCIP-PAM---GNPKPHFYLLSEI----ARECKLTKLSMGMTRDFELA 200
L + GLM IP PA PH L + A L LSMGM+ D + A
Sbjct: 117 VAALPSLRLRGLMAIPEPAADIEAQRAPHRALRALFDALRADGLPLDTLSMGMSADLDAA 176
Query: 201 IASGATSVRIGSGIFGER 218
+ GAT VR+G+ IFG R
Sbjct: 177 VLEGATIVRVGTAIFGAR 194
>gi|297844046|ref|XP_002889904.1| alanine racemase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297335746|gb|EFH66163.1| alanine racemase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 242
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 113/225 (50%), Gaps = 22/225 (9%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLR 69
Q++ +A A R D + +VAVSK IR G F EN +QE K +P
Sbjct: 17 QRVNQAAEKAGRVSDQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIIEKSPQLPDD 76
Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFD---VIETVSREKTASLLSLEMIKQSRF-LPVYIQ 125
EW FIG+LQSNKV ++S ++E+V EK A++L + R L V +Q
Sbjct: 77 IEW----HFIGNLQSNKVKPLLSGVPNLVMVESVDDEKIANMLDRVVGNIGRKPLKVLVQ 132
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAMGNPKP-HFYLL----SE 179
VNT E K G+ P+ ++ L GLM I A P +F LL SE
Sbjct: 133 VNTSGEESKFGVEPSGCVGLAKHVKEACSNLEFSGLMTIGMADYTSTPENFKLLAKCRSE 192
Query: 180 IARECKL----TKLSMGMTRDFELA--IASGATSVRIGSGIFGER 218
+ +E + +LSMGM+ DFELA I G+T+VRIGS IFG R
Sbjct: 193 VCKELGIPEEQCELSMGMSGDFELALQIELGSTNVRIGSTIFGAR 237
>gi|328881783|emb|CCA55022.1| Hypothetical protein YggS [Streptomyces venezuelae ATCC 10712]
Length = 239
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 14/205 (6%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V+L+ V+K + +R+ G AEN+ Q+A K + D+ F+G LQ+NKV
Sbjct: 33 VTLIVVTKTYPASDVRILHGLGVRNVAENRDQDAAPKAA-ACADLDLTWHFVGQLQTNKV 91
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSR----FLPVYIQVNTGYEIQKSGIMPNQTK 143
+V DV+++V R K S LS K+ R L V + +G + G+ P+ +
Sbjct: 92 RSVVGYADVVQSVDRLKLVSSLSAAAEKEGRELGCLLQVALDAESGERGDRGGVAPDGIE 151
Query: 144 DFVILCRQKYQLNVEGLMCIPPA----MGNPKPHFYLLSEIARECKLTK-----LSMGMT 194
+ L ++GLM + P G + F L +++ + T+ +S GM+
Sbjct: 152 ELAAAVDAAPGLRLDGLMTVAPLAGPYAGRQRAAFDRLMDLSTALRATRPAANMVSAGMS 211
Query: 195 RDFELAIASGATSVRIGSGIFGERP 219
D E A+A+GAT VR+G+ + G RP
Sbjct: 212 ADLEEAVAAGATHVRVGTAVLGVRP 236
>gi|308799451|ref|XP_003074506.1| alanine racemase family protein (ISS) [Ostreococcus tauri]
gi|116000677|emb|CAL50357.1| alanine racemase family protein (ISS) [Ostreococcus tauri]
Length = 236
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 113/235 (48%), Gaps = 22/235 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + Q++ ++ + R SV +VAVSK S ++ G F EN +QE
Sbjct: 1 MSVSRNIADVLQRVASACARSGRDGGSVRVVAVSKTKPSDAVKACYDAGHRSFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVS---EIVSLFDVIETVSREKTASLLSLEMI-KQ 116
K L DV+ F+G LQSNK E V ++ET+ EK A+ ++ + ++
Sbjct: 61 LIDKAPTLPD--DVRWHFVGHLQSNKAKALLEGVPSLAMLETIDSEKLANKVNNAVPERR 118
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY----QLNVEGLMCIPPAMGNPKP 172
+ L V +QVNT E K G P D V L R +L GLM I +P
Sbjct: 119 ANALDVMVQVNTSGEESKHGCEP---ADAVKLARHIVDNCPRLRFAGLMTIGMPDYTSRP 175
Query: 173 HFY---------LLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +E+ + +LSMGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 176 ECFETLVECRRQVCAELGLDESACELSMGMSGDFEQAIEMGSTNVRVGSTIFGAR 230
>gi|32267181|ref|NP_861213.1| hypothetical protein HH1682 [Helicobacter hepaticus ATCC 51449]
gi|32263234|gb|AAP78279.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 222
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 111/220 (50%), Gaps = 35/220 (15%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW-----IPLRKEW 72
A LA P +SLVAVSK +++IR CGQ F ENK+Q+ + K +PL EW
Sbjct: 16 ARLAYSPHQIISLVAVSKYQSTEQIRALYECGQRAFGENKVQDLRAKIESLDDLPL--EW 73
Query: 73 DVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
FIG+LQ NK++ ++SL ++ ++ K A L + +Q + +QVN E
Sbjct: 74 ----HFIGNLQENKINTLLSLNPTLLHSLDSIKLALALQKRLGEQK--IRALLQVNAANE 127
Query: 132 IQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK-- 188
KSG+ K+ + +C + +EG+M I H + I R +LT+
Sbjct: 128 ESKSGVSVESAKEIYEHICATCPNIKLEGIMSIG-------AHSDDRALIERSFRLTRDV 180
Query: 189 -----------LSMGMTRDFELAIASGATSVRIGSGIFGE 217
LSMGM+ DFE+AIA GA VRIGS +F E
Sbjct: 181 FDSLKGSGAKILSMGMSGDFEIAIAYGANLVRIGSKLFEE 220
>gi|302144100|emb|CBI23205.3| unnamed protein product [Vitis vinifera]
Length = 311
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 110/224 (49%), Gaps = 22/224 (9%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
+++ +A + R + +VAVSK IR G F EN +QE +K L +
Sbjct: 85 HRVQQAAERSGRGPHQIRVVAVSKTKSVSLIREVYDSGHRCFGENYVQEIIEKAPQLPE- 143
Query: 72 WDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQVN 127
D++ FIG+LQSNKV + V V+ETV EK A L + R L V +QVN
Sbjct: 144 -DIEWHFIGNLQSNKVKPLLTGVPNLAVVETVDDEKIADRLDRMVATIGRKPLKVMVQVN 202
Query: 128 TGYEIQKSGIMPNQ----TKDFVILCRQKYQLNVEGLMCIPPAMGNPKP-HFYLL----S 178
T E KSG+ P K + C L GLM I P +F L S
Sbjct: 203 TSGEESKSGVDPAACVELVKHVALGCPN---LEFGGLMTIGMLDYTSTPENFKTLANCRS 259
Query: 179 EIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + +T+ LSMGM+ DFELAI G+T+VRIGS IFG R
Sbjct: 260 EVCKSLGITEEQCELSMGMSGDFELAIEMGSTNVRIGSTIFGAR 303
>gi|134102281|ref|YP_001107942.1| pyridoxal-5'-phosphate dependent enzyme [Saccharopolyspora
erythraea NRRL 2338]
gi|291003756|ref|ZP_06561729.1| pyridoxal-5'-phosphate dependent enzyme [Saccharopolyspora
erythraea NRRL 2338]
gi|133914904|emb|CAM05017.1| pyridoxal-5'-phosphate dependent enzyme [Saccharopolyspora
erythraea NRRL 2338]
Length = 247
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ +++++ + A R + V L+AV+K + + G AEN+ QEA+
Sbjct: 13 IAESLREVRERVDAACRAAGRQPEEVELLAVTKTFPAGDAALLADLGLTELAENREQEAR 72
Query: 63 KK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVS------REKTASLLSLEM 113
K + LR E V+ IG LQ NK +V DV+E+V + A+ +L+
Sbjct: 73 GKVAEFAELRPEAAVRWHMIGQLQRNKARSVVRWADVVESVDSVRLAEALRRAAANALDA 132
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH 173
++S L V IQV + G P + L + G+M + P G+P
Sbjct: 133 GERSEPLDVLIQVGLDDAAGRGGCPPGDVSALAAEITRHSDLRLRGVMAVAPLGGDPDVA 192
Query: 174 FYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F LS IAR + ++S GM+ D E A+A G+T VR+G+ + G R
Sbjct: 193 FATLSGIARRLQEDYPEAVEMSAGMSGDLESAVAHGSTRVRVGTALLGGR 242
>gi|224024555|ref|ZP_03642921.1| hypothetical protein BACCOPRO_01281 [Bacteroides coprophilus DSM
18228]
gi|224017777|gb|EEF75789.1| hypothetical protein BACCOPRO_01281 [Bacteroides coprophilus DSM
18228]
Length = 222
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 31/221 (14%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
IL + P V LVAVSK ++ I A GQ IF E+K+QE +K+ L K D++ F
Sbjct: 10 ILTELP-SGVRLVAVSKFHPNECIEAAYQAGQRIFGESKVQELTEKYQTLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NKV I +I V K ++ + K +R +P ++++ E K G
Sbjct: 67 IGHLQTNKVKYIAPFISMIHAVDSFKLLEEINKQASKVNRIIPCLLEIHIAQEESKYGFT 126
Query: 139 PNQTKDFVILCRQKYQ---------LNVEGLMCIPPAMGNP---KPHFYLLSEIARECKL 186
CR+ Q +++ G+M + + + F LL + E K
Sbjct: 127 FES-------CREMLQEGAWKNLKNISINGVMGMATNTEDSDEIRKEFKLLHDFFTELKQ 179
Query: 187 T---------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
T ++SMGM+ D+ LAI +G+T VR+GS IFG+R
Sbjct: 180 TYFPNEAQFCEISMGMSHDYPLAIEAGSTLVRVGSKIFGDR 220
>gi|292669562|ref|ZP_06602988.1| cell division protein YlmE [Selenomonas noxia ATCC 43541]
gi|292648771|gb|EFF66743.1| cell division protein YlmE [Selenomonas noxia ATCC 43541]
Length = 239
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 100/202 (49%), Gaps = 13/202 (6%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V L+AV+K + ++ A+ G + EN++QEA K L + V+ IG LQ+NK
Sbjct: 34 VELIAVTKNHPVEAMQKAIDAGVMNIGENRVQEALSKAGTLARA--VKWHLIGHLQTNKA 91
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
+ V FD+I +V + A + + + V +QVN E KSG+ + +
Sbjct: 92 KQAVRQFDLIHSVDSVRLAQEIDKAAERFGKVQNVLVQVNLAREESKSGVYREDLDELLA 151
Query: 148 LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK--------LTKLSMGMTRD 196
+ + ++G MCI P N +P F + E+ R+ K + LSMGMT D
Sbjct: 152 AIDELCSVRLQGFMCIAPNYENVEQCRPLFREMYELFRQMKAAGPRTADIRYLSMGMTHD 211
Query: 197 FELAIASGATSVRIGSGIFGER 218
+ +A+ GA VR+G+ IFG R
Sbjct: 212 YGIAVEEGANLVRVGTAIFGAR 233
>gi|315924167|ref|ZP_07920393.1| cell division protein YlmE [Pseudoramibacter alactolyticus ATCC
23263]
gi|315622569|gb|EFV02524.1| cell division protein YlmE [Pseudoramibacter alactolyticus ATCC
23263]
Length = 232
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 103/212 (48%), Gaps = 14/212 (6%)
Query: 16 NSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQ 75
N A + + DSV L+AV+K + + + G + EN +Q+ KK + ++ D+
Sbjct: 19 NVAKVQSQLPDSVRLIAVTKKHTIAETQAVVDAGVMDLGENHVQDLIKKKLEIK--GDIH 76
Query: 76 LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKS 135
FIG LQ+NKV ++ +I +VS K + E K++ + +Q N E KS
Sbjct: 77 WHFIGHLQTNKVKYLIGEVAMIHSVSSLKLLKKIEQESAKKNLVTNILLQFNLAEEATKS 136
Query: 136 GIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP-H--FYLLSEIARECKLTK---- 188
G N+ + +N+ GLMC+ P N H F L E+ + K+T
Sbjct: 137 GFSANELTKATEEVARLSHINLRGLMCMGPMTENSDEIHKIFGQLKEMYDKIKITYQNGE 196
Query: 189 -----LSMGMTRDFELAIASGATSVRIGSGIF 215
LSMGMT D+ +AIA GAT VR+G IF
Sbjct: 197 NQIDCLSMGMTNDYPIAIAEGATCVRVGRKIF 228
>gi|170756777|ref|YP_001781103.1| hypothetical protein CLD_3085 [Clostridium botulinum B1 str. Okra]
gi|169121989|gb|ACA45825.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum B1
str. Okra]
Length = 223
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 11/205 (5%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
PKD V+L+ VSK + I A G F ENK+QE K +++ D++ IG LQ
Sbjct: 15 PKD-VTLIGVSKTKPVEYIEEAYEAGLRDFGENKVQELIDKIEHFKEKKDIRWHLIGHLQ 73
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NKV IV +I ++ + + + KQ++ V IQ+N G E K GI +
Sbjct: 74 RNKVKYIVGKVYLIHSLDSIRLLEEIEDKYKKQNKIANVLIQINIGKEESKYGIYKEDLE 133
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPK--PHFYLLSEI--------ARECKLTKLSMGM 193
+ + + + +GLM I P + + +F + EI + ++ LSMGM
Sbjct: 134 NMIDAIEKCENVKAKGLMTIIPKGSDEECAKYFRQMKEIFSALQNKSFKNIEVNYLSMGM 193
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
T D+ +AI G+ +R+G GIFG+R
Sbjct: 194 TGDYPIAIKEGSNMIRVGQGIFGKR 218
>gi|148232210|ref|NP_001091336.1| proline synthetase co-transcribed homolog [Xenopus laevis]
gi|125858539|gb|AAI29542.1| LOC100037173 protein [Xenopus laevis]
Length = 261
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 123/241 (51%), Gaps = 28/241 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKR----PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+G LQ +++++++A A+R P LVAVSK + A GQ F EN +
Sbjct: 5 IGKALQSVRERVQHAA--ARRIKTLPAIDPRLVAVSKTKPVDVVIEAYRHGQRYFGENYV 62
Query: 59 QE-AKKKWIP--LRKEWDVQLRFIGSLQSNKVSEIVSLFD--VIETVSREKTASLLSLEM 113
QE A+K P L D++ FIG LQ ++++V + + ++ET+ K A ++
Sbjct: 63 QELAEKASDPSLLSSCPDIKWHFIGHLQKTHINKLVGVPNLYILETIDSVKLADKVNSSW 122
Query: 114 IKQ--SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMG-- 168
K+ S L V +QVNT E K G+ P +T V R+K L GLM I + G
Sbjct: 123 QKKGSSEKLKVMVQVNTSSEDSKYGLAPAETAGLVKHIREKCPSLEFVGLMTIG-SFGYD 181
Query: 169 ---NPKPHFYLL--------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
P P F +L ++ + +LSMGM+ DFE AI G+T+VRIGS +FG+
Sbjct: 182 LTQGPNPDFQMLLAQRDMVCEKLGLQIDSVELSMGMSSDFEHAIEVGSTNVRIGSTLFGD 241
Query: 218 R 218
R
Sbjct: 242 R 242
>gi|313682054|ref|YP_004059792.1| alanine racemase domain protein [Sulfuricurvum kujiense DSM 16994]
gi|313154914|gb|ADR33592.1| alanine racemase domain protein [Sulfuricurvum kujiense DSM 16994]
Length = 224
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 117/223 (52%), Gaps = 9/223 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDS--VSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M+L + + F IE R D V +VA SK VD++ I+ GQ F ENK+
Sbjct: 1 MTLLEQKRHFDHIIEKVEKARLRVSDHHIVKIVAASKYVDAEAIKSLYDIGQRAFGENKV 60
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQS 117
Q+ K L K+ ++ FIG+LQ NK++ ++S+ ++ ++ + A L+ + +
Sbjct: 61 QDLINKSEQL-KDLPIEWHFIGTLQKNKINHLLSVRPHLLHSIDSIELAHALNERLERDE 119
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNP---KPH 173
+L +Q+N+ YE KSG P + + + + ++ +L ++G+M I + +P +
Sbjct: 120 MYLRALVQINSAYEESKSGFFPEEINEKYAQIMQECPRLKLQGVMSIGAHVDDPVLIRKS 179
Query: 174 FYLLSEIAREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
F I + T SMGM+ DFELAI G+T +R+GS +F
Sbjct: 180 FETTRRIFETLPQATICSMGMSSDFELAIECGSTMIRLGSILF 222
>gi|253745137|gb|EET01241.1| PLP dependent enzymes class III [Giardia intestinalis ATCC 50581]
Length = 220
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 112/227 (49%), Gaps = 21/227 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+S+ + L+ K +I N+ L+AVSK + A + GQ +F EN +QE
Sbjct: 2 LSVADALKAIKAEIGNA-----------KLIAVSKTKPIGAVLEAYAAGQRLFGENYVQE 50
Query: 61 AKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFD-VIETVSREKTASLLSLEMIKQSR 118
K + D++ FIG LQ+NKV ++ + + VI+TV ++ A L+
Sbjct: 51 LIGKTEATQDVASDIEWHFIGHLQTNKVRDVALIPNCVIQTVDSDRLARRLNDARPDNLD 110
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL- 177
L V IQ+NT E KSG + +L + GLM I A G+P+ F L
Sbjct: 111 LLRVMIQINTSGESTKSGCTAEDAIELAQTIMTLPRLRLIGLMTIG-APGSPEASFRALV 169
Query: 178 ------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + + KLSMGM+ D++LA+ GA VRIG+ IFGER
Sbjct: 170 DARNAIEQVVKPEERLKLSMGMSTDYQLAVQMGADYVRIGTAIFGER 216
>gi|227873142|ref|ZP_03991434.1| TIM-barrel fold protein [Oribacterium sinus F0268]
gi|227841036|gb|EEJ51374.1| TIM-barrel fold protein [Oribacterium sinus F0268]
Length = 239
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 15/228 (6%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
++Q+ ++ I + + R + V L+ VSK + I+ A S G F ENK+QE + K+
Sbjct: 4 EIQIVRENIRKACERSGRKPEEVLLIGVSKTKPYEAIQEAYSFGIRDFGENKVQEIRDKF 63
Query: 66 IPLRKEWDV-----QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
L+++ + IGSLQ NKV + +I ++ A + E K+
Sbjct: 64 ALLQEDSLLLKDAPSFHMIGSLQKNKVKYLPGRVKMIHSIDSLPLALEVEKEYAKKEELA 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
V ++VN E KSG + + + C+ + + G M + P NP+ HF L
Sbjct: 124 SVLLEVNVAKEESKSGFFLEEVEQALEECKDLPHVKLCGFMTVAPFTENPEENRVHFRAL 183
Query: 178 SEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + L +LSMGM+ D+E+A+ GAT VR+GS IFG R
Sbjct: 184 KNLLTNMQKKFPALPLKELSMGMSGDYEVAVEEGATMVRVGSFIFGAR 231
>gi|289423142|ref|ZP_06424957.1| pyridoxal phosphate enzyme, YggS family [Peptostreptococcus
anaerobius 653-L]
gi|289156473|gb|EFD05123.1| pyridoxal phosphate enzyme, YggS family [Peptostreptococcus
anaerobius 653-L]
Length = 233
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 120/232 (51%), Gaps = 18/232 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
SL + L+ + I A+ + R S+ L+ V+K VD + A+ G ENK QE
Sbjct: 3 SLKDNLERVRASINQVALSSNRDPKSILLLGVTKTVDVDVVESAIELGVEEVGENKPQEL 62
Query: 62 KKKW--IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K+ I R +W IGSLQ+NKV I+ ++I ++ R + A ++L + R
Sbjct: 63 ARKYDIIKDRVKW----HQIGSLQTNKVKYIIDKVELIHSLDRVRLADEINLRADRIDRD 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGNPK---PHFY 175
+ +QVN E K G+ P+ +DFV C ++ + G+M + A + K F
Sbjct: 119 IKCLVQVNMSGEESKHGLRPSDVEDFVRYCSSNCPRIRIVGMMTMAAADADEKGVRACFR 178
Query: 176 LLSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L ++++ K+ +LSMGM+ D+++AI G+T VR+G+ IFG+R
Sbjct: 179 GLRDLSQSIDRLGLDNVKMKELSMGMSGDYKIAIEEGSTIVRVGTSIFGKRD 230
>gi|60682296|ref|YP_212440.1| putative racemase [Bacteroides fragilis NCTC 9343]
gi|60493730|emb|CAH08519.1| putative racemase [Bacteroides fragilis NCTC 9343]
Length = 222
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 105/214 (49%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+LA+ P V LVAVSK ++ I A GQ IF E+K+QE K+ L K D++ F
Sbjct: 10 VLAELP-SGVRLVAVSKFHPNEAIEEAYRAGQRIFGESKVQEMTGKYESLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK+ + +I + K + ++ + IK + + +Q++ E K G
Sbjct: 67 IGHLQTNKIKYMAPYVSMIHGIDSYKLLAEVNKQAIKAEKVIRCLLQIHIAQEETKFGFS 126
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKP------------HFYLLSEIAREC 184
++ K+ + K N++ GLM + + + H A E
Sbjct: 127 FDECKEMLNAAEWKALANIQICGLMGMATNTDSKEQIEREFRSLNCFFHEVKKQYFANEP 186
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ LAI G+T VR+GS IFGER
Sbjct: 187 TFCELSMGMSHDYHLAIKEGSTLVRVGSKIFGER 220
>gi|195575019|ref|XP_002105480.1| GD17245 [Drosophila simulans]
gi|194201407|gb|EDX14983.1| GD17245 [Drosophila simulans]
Length = 270
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 116/230 (50%), Gaps = 34/230 (14%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP---LRKEWDVQ 75
I A RP LVAVSK ++ + A GQ F EN +QE ++K L K D++
Sbjct: 33 IQAARPL----LVAVSKTKPAEAVIEAYEDGQRDFGENYVQELEEKSRHPDILAKCPDIR 88
Query: 76 LRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIKQ----SRFLPVYIQVNTG 129
FIG +QSNK+++I+S+ +I+TV EK A+ L K+ L V IQ+NT
Sbjct: 89 WHFIGHMQSNKINKILSVPNLHMIQTVDSEKLATKLDAAWSKRQPTPEEPLQVLIQINTS 148
Query: 130 YEIQKSGIMPNQTKD----FVILCRQKYQLNVEGLMCIPPAMG-----NPKPHFYLLSEI 180
E KSGI + KD + + LN+ G+M I A G P P F L ++
Sbjct: 149 GEDVKSGI---EAKDAPALYQYIKSNLKHLNLMGIMTIG-AFGFDYASGPNPDFVSLMQV 204
Query: 181 ARE-CKLTKL-------SMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
R C+ L SMGM+ DF+ AI G+T VR+GS IFG R +
Sbjct: 205 HRSICEAYSLAPDSVLVSMGMSHDFDKAIEMGSTVVRVGSSIFGHRAAKA 254
>gi|328955369|ref|YP_004372702.1| alanine racemase domain protein [Coriobacterium glomerans PW2]
gi|328455693|gb|AEB06887.1| alanine racemase domain protein [Coriobacterium glomerans PW2]
Length = 245
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 111/212 (52%), Gaps = 20/212 (9%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV-QLRF--I 79
RP+ + L+AVSK VD K+ A+ G +F EN+ QE +K L ++ Q+RF I
Sbjct: 28 RPRKAAQLMAVSKTVDPVKVEAAIRVGYRVFGENRPQELVRKMNALAPRQELPQVRFDMI 87
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ--SRFL----PVYIQVNTGYEIQ 133
G+LQ NK++ ++ I+++S E A +S+ + ++ +R + PV ++VN E
Sbjct: 88 GNLQKNKINAVLGRAAYIQSISSESIARAVSVRVEREIAARHMIEPQPVLLEVNVSGETS 147
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE------- 183
K+G P + + + R + + G+M + P P + F L E+ E
Sbjct: 148 KAGFAPEELRASMDRLRSLCGIRIAGMMTMAP-RAQPTLARATFRGLRELRDELVKAYDG 206
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L+ LS GM+ DFE+A+ GAT +R+G +F
Sbjct: 207 LDLSVLSCGMSEDFEIALEEGATLIRLGRVVF 238
>gi|37525148|ref|NP_928492.1| hypothetical protein plu1180 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36784574|emb|CAE13474.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 231
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 105/225 (46%), Gaps = 16/225 (7%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
LQ + I +A +R + ++L+AVSK + I A++ GQ F EN +QE +K
Sbjct: 7 NLQDVRTHIAIAAQKCERAPEEITLLAVSKTKPVEDIEKAIAAGQRQFGENYVQEGVEKI 66
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
D+ FIG LQSNK + F+ T+ R K A L+ + + L + IQ
Sbjct: 67 AYFANCNDLIWHFIGPLQSNKSRLVAENFNWCHTIDRLKIAQRLNEQRPEGMEPLNILIQ 126
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF----------- 174
+N E KSGI ++ + + + GLM IP P+P +
Sbjct: 127 INISDERSKSGIQLDELSTLAAEMNKLPNVRLRGLMAIPA----PEPDYAHQLAVFRRME 182
Query: 175 -YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ + ++ LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 183 QAFLNLKTKYPQIDTLSMGMTDDMAAAINCGSTLVRIGTAIFGAR 227
>gi|157363792|ref|YP_001470559.1| hypothetical protein Tlet_0929 [Thermotoga lettingae TMO]
gi|157314396|gb|ABV33495.1| conserved hypothetical protein [Thermotoga lettingae TMO]
Length = 223
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 111/225 (49%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL L K+KI+ S + R DSV L+AV+K D IR L G AEN Q+
Sbjct: 1 MSLYENLMKVKKKIDQSTAKSGRDPDSVVLIAVTKEADMDSIRQILEFGIKNLAENYAQK 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K W FIG +Q+NK+ IV + I +V RE+ ++ + +
Sbjct: 61 LVRKSEQFTNAIW----HFIGRIQTNKLKYIVPRCEYIHSVWREEELKEINKIAERFQKI 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ I+VN E K+G+ P + + + + + GLM + P + NP+ ++ S+
Sbjct: 117 QKILIEVNVSGEPTKAGVDPIKLEKLLKAASSLSAVQIVGLMTMAPYVENPQEVRWIFSK 176
Query: 180 IARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ R+ + L LSMGM+ DFE+A+ GAT +RIG IF
Sbjct: 177 L-RQLRDIYRKDFPSLEHLSMGMSNDFEVALEEGATMIRIGRAIF 220
>gi|150025955|ref|YP_001296781.1| hypothetical protein FP1913 [Flavobacterium psychrophilum JIP02/86]
gi|149772496|emb|CAL43979.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
Length = 219
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 101/206 (49%), Gaps = 15/206 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+SV+LVAVSK + A GQ IF ENK+QE +KW + K D+Q IG +Q+N
Sbjct: 16 ESVTLVAVSKTKPISDLMEAYQAGQRIFGENKIQEMTQKWEVMPK--DIQWHMIGHVQTN 73
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV + +I V K ++ + K R + +Q+ E K G+ + +
Sbjct: 74 KVKFMAEYVSLIHGVDSLKLLEEINKQAKKYDRIIACLLQIYIAKEETKFGLDEKELNEL 133
Query: 146 VILCRQKYQLNVE--GLMCIPPAMGNP---KPHFYLLSEIARE--------CKLTKLSMG 192
+ K N++ GLM + N K F L I C+L+ LSMG
Sbjct: 134 LASTEFKSFQNIKIVGLMGMATFTENQNQIKKEFTHLKSIFDNSKSSSIVNCQLSILSMG 193
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D++LAI SG+T VRIGS IFG R
Sbjct: 194 MSGDYKLAIESGSTMVRIGSSIFGGR 219
>gi|322389015|ref|ZP_08062585.1| cell division protein YlmE [Streptococcus parasanguinis ATCC 903]
gi|321144320|gb|EFX39728.1| cell division protein YlmE [Streptococcus parasanguinis ATCC 903]
Length = 222
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 18/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + +Q++E + A R +D V+++AV+K VD + G EN++ +
Sbjct: 1 MNLVENADLVRQQVETARNKANR-QDQVNVIAVTKYVDVATTEALVKTGIQHIGENRVDK 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
+K+ L +D+ IGSLQ KV ++++L D + K L+ E+ K++
Sbjct: 60 FLEKYQALNG-YDLTWHLIGSLQRRKVKDVINLVDYFHALDSVK----LAQEIQKRAEHP 114
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ ++QVN E K G P++ D + Q ++ + GLM + P + + + S+
Sbjct: 115 IKCFLQVNISGEESKHGFAPDELDDVLAEIAQLDKIEIVGLMTMAPFEASQEELQDIFSK 174
Query: 180 IARECK-----------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ K ++LSMGM+RDFE+AIA+GAT VRIG+ F
Sbjct: 175 THQLQKQLEKKQLKNMPFSELSMGMSRDFEVAIANGATYVRIGTSFF 221
>gi|297380235|gb|ADI35122.1| conserved hypothetical protein [Helicobacter pylori v225d]
Length = 222
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 117/227 (51%), Gaps = 40/227 (17%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK-----WIP 67
KIE + I R V +VAVSK + I+ +C Q F EN++Q+ K K +P
Sbjct: 14 KIEKARIAYSRHH-IVKIVAVSKNASLEAIQNYYNCSQRAFGENRVQDLKMKAQSLDHLP 72
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV---- 122
L EW IGSLQ NK++ ++SL ++ ++ K L+L++ K+ L V
Sbjct: 73 L--EW----HMIGSLQENKINALLSLKPALLHSLDSLK----LALKIEKRCEMLGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+QVN+ YE KSG+MP +T + + + +L ++GLMCI + K EI
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKRLKLKGLMCIGAHADDEK-------EIE 175
Query: 182 RECKLTK-----------LSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ TK LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 176 KSFITTKKLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|108563422|ref|YP_627738.1| hypothetical protein HPAG1_0997 [Helicobacter pylori HPAG1]
gi|107837195|gb|ABF85064.1| hypothetical protein HPAG1_0997 [Helicobacter pylori HPAG1]
Length = 222
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 109/203 (53%), Gaps = 21/203 (10%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---EWDVQLRFIGSLQS 84
V +VAVSK + I+ +C Q F ENK+Q+ K K L EW IGSLQ
Sbjct: 28 VKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKIKMHSLEHLPLEW----HMIGSLQE 83
Query: 85 NKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV----YIQVNTGYEIQKSGIMP 139
NK++ +++L ++ ++ K L+L++ K+ L V +QVN+ YE KSG+MP
Sbjct: 84 NKINALLNLKPALLHSLDSLK----LALKIEKRCEMLGVNLNALLQVNSAYEESKSGVMP 139
Query: 140 NQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECK-LTKLSMGMT 194
+T + + + L ++GLMCI + K F ++ + K + LSMGM+
Sbjct: 140 EETLEIYSQISETCKHLKLKGLMCIGAHADDEKEIEKSFITTKKLFDQIKNASVLSMGMS 199
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
DFELAIA GA +RIGS +F E
Sbjct: 200 DDFELAIACGANLLRIGSFLFKE 222
>gi|317011255|gb|ADU85002.1| hypothetical protein HPSA_05125 [Helicobacter pylori SouthAfrica7]
Length = 222
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 111/224 (49%), Gaps = 34/224 (15%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-- 70
KIE + I R V +VA+SK + I+ +C Q F ENK+Q+ K K L
Sbjct: 14 KIEKARIAYSRHH-IVKIVAISKNASLESIQHYYNCSQRAFGENKVQDLKTKMHSLEHLP 72
Query: 71 -EWDVQLRFIGSLQSNKVSEIVSL-------FDVIETVSR-EKTASLLSLEMIKQSRFLP 121
EW +GSLQ NK++ ++SL D +E + EK L + L
Sbjct: 73 LEW----HMVGSLQENKINTLLSLKPALLHSLDSLELALKIEKRCETLGVN-------LN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI----LCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
+QVN+ YE KSG+ P +T DF C++ + ++GLMCI + + F
Sbjct: 122 ALLQVNSAYEKSKSGVKPEETLDFYSQISETCKR---IQLKGLMCIGAHTDDETKIEKSF 178
Query: 175 YLLSEIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ + K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 179 ITTKKLFDQLKNASILSMGMSYDFELAIACGANLLRIGSFLFKE 222
>gi|291530262|emb|CBK95847.1| pyridoxal phosphate enzyme, YggS family [Eubacterium siraeum 70/3]
gi|291557078|emb|CBL34195.1| pyridoxal phosphate enzyme, YggS family [Eubacterium siraeum
V10Sc8a]
Length = 241
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 12/218 (5%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
KQ I + A R D+V ++AV+K V +KI A S G + EN++QE K+
Sbjct: 23 AIKQNIAEAMDKAGRC-DTVRIMAVTKTVPCEKINYAESLGIDLLGENRVQEFLGKYENY 81
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
++ ++ FIG LQ NKV I+ +I +V + A+ + + +++N
Sbjct: 82 SEKSEIH--FIGGLQKNKVKYIIDKVSMIHSVDSVELAAEIDRRAGSHGLVKDILLEINI 139
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--- 185
G E K GI P++ + + + GLM IPP + K +F + E+ K
Sbjct: 140 GGEESKGGIAPSELIETAKAVSGLENVRIRGLMTIPPVNCDEK-YFASMQELFENSKQKY 198
Query: 186 -----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ D+ A+ G+T VRIGSG+FG R
Sbjct: 199 SFLSGMDTLSMGMSGDYATAVKYGSTLVRIGSGLFGYR 236
>gi|55980532|ref|YP_143829.1| hypothetical protein TTHA0563 [Thermus thermophilus HB8]
gi|55771945|dbj|BAD70386.1| conserved hypothetical protein (TIM-barrel fold) [Thermus
thermophilus HB8]
Length = 211
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 8/207 (3%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKWIPLRK 70
++I + A R + V LVAV+K ++IR L+ G E+++QEA KK L+
Sbjct: 8 ERIARACRCAGRRPEEVRLVAVTKGRSVEEIREKVLAYGTFPLGESRVQEALKKMDLLQA 67
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
EW +G LQ NK ++ F ++ ++ + A L K L V ++VN G
Sbjct: 68 EWH----LVGHLQRNK-AKFAPRFALVHSLDSLRLAEALEKVGEKAGVRLKVLVEVNLGR 122
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLSEIARECKLTK 188
E QK G++ + + + R+ L V GLM +PP +P F LSE+A L +
Sbjct: 123 EPQKHGVLEEELPELLHRLREMPHLEVLGLMTVPPIGPEAVVRPIFRRLSELADRYGLPE 182
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIF 215
SMGM+ D+E A+ GAT VR+G +F
Sbjct: 183 RSMGMSDDYEWAVEEGATLVRVGRALF 209
>gi|330469286|ref|YP_004407029.1| alanine racemase domain-containing protein [Verrucosispora maris
AB-18-032]
gi|328812257|gb|AEB46429.1| alanine racemase domain-containing protein [Verrucosispora maris
AB-18-032]
Length = 248
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 104/235 (44%), Gaps = 21/235 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I ++ + R + V+++AV+K + + G EN+ QEA
Sbjct: 16 LAAGLARVRTRIADACVAVGRDRTEVTMIAVTKTYPAADVIALAGLGVTDVGENRDQEAA 75
Query: 63 KK-----WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI-KQ 116
K + W FIG LQ NKV +V DV+++V + AS L ++
Sbjct: 76 PKAEQVALAGVAPRW----HFIGRLQRNKVKSVVRYADVVQSVDSVRLASALDAATTGRR 131
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL------CRQKYQLNVEGLMCIPPAMGNP 170
R L V++QV+ + + G +P+ + L L + GLM + P P
Sbjct: 132 DRPLEVFVQVSIDGDPSRGGSVPDSADPDIGLGPVTAAVAASAGLRLAGLMAVAPLGWEP 191
Query: 171 KPHFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ F L+ IA + LS GM+ D E AI GAT VR+GS + G RP
Sbjct: 192 ERAFARLATIAETVRAEHPQAVALSAGMSGDLEAAIGHGATHVRVGSALLGMRPT 246
>gi|293394484|ref|ZP_06638780.1| YggS family pyridoxal phosphate enzyme [Serratia odorifera DSM
4582]
gi|291422949|gb|EFE96182.1| YggS family pyridoxal phosphate enzyme [Serratia odorifera DSM
4582]
Length = 235
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 108/228 (47%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + +I+ +A+ R + VSL+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDVRGRIDAAAVNCARAPEEVSLLAVSKTKPVAAIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + L ++ FIG LQSNK + FD TV R + A LS + +
Sbjct: 63 VDKIRHFAALPDGAGLEWHFIGPLQSNKSRLVAEHFDWCHTVDRLRIAQRLSDQRPAELP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQ+N E KSGI Q +L + G+M IP + +
Sbjct: 123 PLNVLIQINISDEQSKSGIELAQLPLLAQAVAALPRLTLRGVMAIPAPESDFPRQLAVFR 182
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A + + LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 183 QMAAAFQQLQQDYPQVDTLSMGMTDDMVAAIAAGSTLVRIGTAIFGAR 230
>gi|167750503|ref|ZP_02422630.1| hypothetical protein EUBSIR_01479 [Eubacterium siraeum DSM 15702]
gi|167656429|gb|EDS00559.1| hypothetical protein EUBSIR_01479 [Eubacterium siraeum DSM 15702]
Length = 241
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 107/216 (49%), Gaps = 12/216 (5%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
KQ I + A R D+V ++AV+K V +KI A S G + EN++QE K+ +
Sbjct: 25 KQNIAEAMDKAGRC-DTVRIMAVTKTVPCEKINYAESLGIDLLGENRVQEFLGKYENYSE 83
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
+ ++ FIG LQ NKV I+ +I +V + A+ + + +++N G
Sbjct: 84 KSEIH--FIGGLQKNKVKYIIDKVSMIHSVDSVELAAEIDRRAGSHGLVKDILLEINIGG 141
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK----- 185
E K GI P++ + + + GLM IPP + K +F + E+ K
Sbjct: 142 EESKGGIAPSELIETAKAVSGLENVRIRGLMTIPPVNCDEK-YFASMQELFENSKQKYSF 200
Query: 186 ---LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ D+ A+ G+T VRIGSG+FG R
Sbjct: 201 LSGMDTLSMGMSGDYATAVKYGSTLVRIGSGLFGYR 236
>gi|207093275|ref|ZP_03241062.1| hypothetical protein HpylHP_10976 [Helicobacter pylori
HPKX_438_AG0C1]
Length = 212
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 116/218 (53%), Gaps = 22/218 (10%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-- 70
KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K K L
Sbjct: 4 KIEKARIAYSR-HHIVKIVAVSKNASLEAIQHYYNCSQRAFGENKVQDLKTKMHSLEHLP 62
Query: 71 -EWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV----YI 124
EW IGSLQ NK++ ++SL ++ ++ K L+L++ K+ L V +
Sbjct: 63 LEW----HMIGSLQENKINALLSLKPALLHSLDSLK----LALKIEKRCEILGVNLNALL 114
Query: 125 QVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEI 180
QVN+ YE KSG++P +T + + + +L ++GLMCI + K F ++
Sbjct: 115 QVNSAYEESKSGVVPEETLETYSQISETCKRLKLKGLMCIGAHTDDEKEIEKSFITTKKL 174
Query: 181 ARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 175 FDQIKNASVLSMGMSCDFELAIACGANLLRIGSFLFKE 212
>gi|254429950|ref|ZP_05043657.1| conserved hypothetical protein TIGR00044 [Alcanivorax sp. DG881]
gi|196196119|gb|EDX91078.1| conserved hypothetical protein TIGR00044 [Alcanivorax sp. DG881]
Length = 229
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/212 (35%), Positives = 105/212 (49%), Gaps = 12/212 (5%)
Query: 17 SAILAKRPKD--SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
+A+ A+ +D SV L+AVSK + ++ GQ F EN LQEA K L+ V
Sbjct: 16 NALCARSGRDPHSVQLLAVSKTRTADELAQLADQGQRHFGENYLQEALDKIAALQGRGLV 75
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
FIG +QSNK +I + FD + +V R K A LS + L V +QVN E K
Sbjct: 76 -WHFIGPIQSNKTRDIAAHFDWVHSVDRLKVARRLSEQRGPDLPPLNVCLQVNVDDEASK 134
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLSEIARECK-----L 186
SG+ + L + GLM IP A GN + F L+ + + L
Sbjct: 135 SGVPLAGVAELAEQIEALPNLRLRGLMAIPRADNTDGN-RAAFRQLAMTLSQLRNTMPAL 193
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D+ +AI GAT +R+G+ +FG R
Sbjct: 194 DTLSMGMSADYAVAIEEGATVIRLGTALFGPR 225
>gi|317009668|gb|ADU80248.1| hypothetical protein HPIN_05220 [Helicobacter pylori India7]
Length = 222
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 107/203 (52%), Gaps = 21/203 (10%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---EWDVQLRFIGSLQS 84
V +VAVSK + I+ +C Q F EN++Q+ K K L EW IGSLQ
Sbjct: 28 VKIVAVSKNASLEAIQHYYNCSQRAFGENRVQDLKTKMHSLEHLPLEW----HMIGSLQE 83
Query: 85 NKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV----YIQVNTGYEIQKSGIMP 139
NK++ ++SL ++ ++ K L+L++ K+ L V +QVN+ YE KSG+MP
Sbjct: 84 NKINALLSLKPALLHSLDSLK----LALKIEKRCEILGVNLNALLQVNSAYEESKSGVMP 139
Query: 140 NQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECK-LTKLSMGMT 194
+T + + + L + GLMCI + K F ++ K + LSMGM+
Sbjct: 140 EETLEIYSQISETCKHLKLRGLMCIGAHADDEKKIEKSFITTKKLFDRLKNASILSMGMS 199
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
DFELAIA GA +RIGS +F E
Sbjct: 200 DDFELAIACGANLLRIGSFLFKE 222
>gi|148379437|ref|YP_001253978.1| hypothetical protein CBO1465 [Clostridium botulinum A str. ATCC
3502]
gi|153931706|ref|YP_001383816.1| hypothetical protein CLB_1490 [Clostridium botulinum A str. ATCC
19397]
gi|153937054|ref|YP_001387366.1| hypothetical protein CLC_1502 [Clostridium botulinum A str. Hall]
gi|168182394|ref|ZP_02617058.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum Bf]
gi|237794803|ref|YP_002862355.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum Ba4
str. 657]
gi|148288921|emb|CAL83008.1| putative alanine racemase [Clostridium botulinum A str. ATCC 3502]
gi|152927750|gb|ABS33250.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum A
str. ATCC 19397]
gi|152932968|gb|ABS38467.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum A
str. Hall]
gi|182674285|gb|EDT86246.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum Bf]
gi|229260689|gb|ACQ51722.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum Ba4
str. 657]
Length = 223
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 11/205 (5%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
PKD V+L+ VSK + I A G F ENK+QE K +++ D++ IG LQ
Sbjct: 15 PKD-VTLIGVSKTKPVEYIEEAYEAGLRDFGENKVQELIDKIEYFKEKKDIRWHLIGHLQ 73
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NKV IV +I ++ + + + KQ++ V IQ+N G E K GI +
Sbjct: 74 RNKVKYIVGKVYLIHSLDSIRLLEEIEDKYKKQNKIANVLIQINIGKEESKYGIYKEELG 133
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPK--PHFYLLSEI--------ARECKLTKLSMGM 193
+ + + + +GLM I P + + +F + EI + ++ LSMGM
Sbjct: 134 NMIDAIEKCENVKAKGLMTIIPKGSDEECAKYFRQMKEIFSALQNKSFKNIEVNYLSMGM 193
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
T D+ +AI G+ +R+G GIFG+R
Sbjct: 194 TGDYPIAIKEGSNMIRVGQGIFGKR 218
>gi|256825472|ref|YP_003149432.1| pyridoxal phosphate enzyme, YggS family [Kytococcus sedentarius DSM
20547]
gi|256688865|gb|ACV06667.1| pyridoxal phosphate enzyme, YggS family [Kytococcus sedentarius DSM
20547]
Length = 254
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 108/238 (45%), Gaps = 21/238 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + LQ +IE + A R + V+LV V+K ++ + + G EN+ QEA
Sbjct: 14 LADGLQATLARIEEACGRAGRSPEEVTLVVVTKFFGAEDLARLVRLGVRDVGENRDQEAA 73
Query: 63 KK---W---IPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K W +P + V++ FIG +QS K + D++ +V R K L
Sbjct: 74 AKAAAWPDHLPAGERGVAEAVRMHFIGQVQSKKAGSVAGYADLVHSVDRLKLVGALDRGA 133
Query: 114 IKQSRFLPVYIQVN-----TGYE--IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA 166
+ R L V +QV+ G E + G P+ + + +L++ GLM + P
Sbjct: 134 QRHGRRLAVCVQVDLDPVVEGGEPDAGRGGAHPDDLPELCAAVDRSERLDLAGLMTVAPP 193
Query: 167 MGNPKPHFYLLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P F L+ + A T LS GM+ D E A+A+GAT VR+GS I G RP
Sbjct: 194 QVEPARAFAELARVHAAVLAEHPGATMLSAGMSGDLEAAVAAGATHVRVGSAIMGARP 251
>gi|319442517|ref|ZP_07991673.1| alanine racemase domain protein [Corynebacterium variabile DSM
44702]
Length = 258
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 118/239 (49%), Gaps = 30/239 (12%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+ + +++ +A A R V L+ VSK V +++R A+ G AENK QE +K
Sbjct: 21 RWDAVRARVDEAARAAGRDPAEVRLLPVSKTVPVERLRPAVDAGMTELAENKPQEIGRKA 80
Query: 66 IPLRKEWDVQLRF--IGSLQSNK---VSEIVSLFDVIETVSREKTASLLSLEMIKQS--- 117
+ + D+ +R+ IG LQ+NK V+E + F +++V R A LE + ++
Sbjct: 81 VEM---ADLPVRWVAIGHLQTNKAKIVAEHAAEFQALDSV-RLAEALQRRLEALDETADG 136
Query: 118 ------RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP- 170
R L V +QVNT E K+G P + + + +L V G M + +
Sbjct: 137 PADGPARTLDVLVQVNTSGEDTKTGASPEEVDAILEAAARCDRLRVRGFMTVAVHSEDEA 196
Query: 171 --KPHFYLLS---EIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ F L E ARE LT+LSMGM+ DF LAIA GAT VR+G+ +FG R
Sbjct: 197 EVRACFAQLRGILERARERAVVDPVLLTELSMGMSGDFPLAIAEGATCVRVGTALFGAR 255
>gi|227536720|ref|ZP_03966769.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33300]
gi|227243412|gb|EEI93427.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33300]
Length = 229
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 102/207 (49%), Gaps = 20/207 (9%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V+LVAVSK ++ I A GQ +F EN +QE +K L K D+Q IG LQ+NKV
Sbjct: 19 VTLVAVSKTKPNEDILQAYEAGQRVFGENMVQELVEKQEQLPK--DIQWHLIGHLQTNKV 76
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
I +IE+V K ++ +K R + +Q+ E K G+ + T+ +
Sbjct: 77 KYIAPFIHMIESVDSIKLLKEINKHALKHDRIIDCLLQIYIADEDSKFGL--DHTELIEL 134
Query: 148 LCRQKY----QLNVEGLMCIPPAMGNPK---PHFYLL---------SEIARECKLTKLSM 191
L +++ + + GLM I N K FY L S +E LSM
Sbjct: 135 LRDEEFSSLQNIRIRGLMGIATNTDNEKVIKEEFYELKMLFDGVKSSFFRKEDSFDTLSM 194
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D+ LAI G+T +R+GS +FG+R
Sbjct: 195 GMSSDYRLAIEQGSTMIRLGSTVFGKR 221
>gi|319936620|ref|ZP_08011033.1| hypothetical protein HMPREF9488_01866 [Coprobacillus sp. 29_1]
gi|319808177|gb|EFW04742.1| hypothetical protein HMPREF9488_01866 [Coprobacillus sp. 29_1]
Length = 217
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 15/198 (7%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL--RKEWDVQLRFIGSLQSNK 86
+LVA +K +D K+I CG + EN++Q +K+ + W FIG+LQ+NK
Sbjct: 19 TLVAATKYIDEKEIEELEKCGCFYYGENRVQAFLEKYEKYHGKGHW----HFIGTLQTNK 74
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V I+ D+I +V+ L + K+ + + +QVN E K G + + +
Sbjct: 75 VKYIIDKVDLIHSVNSYSLIDELEKQASKRDIKIHILLQVNIANENSKHGFTIEEMNNVM 134
Query: 147 ILCRQKYQLNVEGLMCIPPAM--GNPKPHFYLLSEIARECK-------LTKLSMGMTRDF 197
+ ++ L V+GLM + P + +P+F E+ + K L +LSMGM+ D+
Sbjct: 135 VYIQKCSALIVDGLMMMAPHIEAEQTRPYFQQTHELLHKLKRDFPHHPLKELSMGMSEDY 194
Query: 198 ELAIASGATSVRIGSGIF 215
+A+ GAT VRIG +F
Sbjct: 195 HIALEEGATFVRIGRALF 212
>gi|282882126|ref|ZP_06290767.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus lacrimalis
315-B]
gi|281298156|gb|EFA90611.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus lacrimalis
315-B]
Length = 228
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 116/232 (50%), Gaps = 20/232 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKR---PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
MS+ + L+ ++IE AKR + V+L+AV+K ++ I+ A+ G EN+
Sbjct: 1 MSVKDNLKFVMEEIEK----AKRHSLTNEDVNLIAVTKNHETDVIKEAIDLGITDIGENR 56
Query: 58 LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+QE K K L V IG+LQ+NKV I + ++I+++ K A +
Sbjct: 57 VQELKSKIDELGPI--VNYHMIGNLQTNKVKYIYNRVNMIQSLDTLKLAKEIDKRAGSDG 114
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP------- 170
+ IQ+N G E QKSGI T F+ +++ GLM I P +
Sbjct: 115 IEVNCLIQINIGNEEQKSGIAYEDTLKFIYNLMDFKHISIRGLMAIAPNTDDKQYLRRLF 174
Query: 171 KPHFYLLSEIARE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ F + +I +E ++ LSMGM+ D+++AI G+ VRIG+ IFG+R
Sbjct: 175 RKMFEMKEKIIKENISSVRMDYLSMGMSSDYQIAIEEGSNMVRIGTKIFGKR 226
>gi|226313410|ref|YP_002773304.1| hypothetical protein BBR47_38230 [Brevibacillus brevis NBRC 100599]
gi|226096358|dbj|BAH44800.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 232
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 109/223 (48%), Gaps = 17/223 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA- 61
L +LQ + +I+ + A R ++ V ++AV+K VD+ I L+ G EN++Q+A
Sbjct: 8 LKERLQSIEARIQAACDRANRKREEVKIIAVTKYVDADAIGDLLAVGVENIGENRVQDAL 67
Query: 62 -KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + + W FIG LQ+NK E+V F I ++ R A L+ +
Sbjct: 68 PKHELHGNKGIW----HFIGHLQTNKAKEVVGKFPYIHSLDRLSLAQELNRRGEALDHVV 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++Q+N E K G+ PN F+ +++ GLM + P + N + F L
Sbjct: 124 KCFLQINISGEETKFGLSPNDVLAFLRETSNMKHISIVGLMTMAPVVENQEEARQVFRGL 183
Query: 178 SEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGS 212
E + ++ +LSMGM+ DFE+AI GAT +R+GS
Sbjct: 184 YEWKQRINEMAFPHAQVEELSMGMSSDFEVAIEEGATYIRLGS 226
>gi|296876956|ref|ZP_06901000.1| YggS family pyridoxal phosphate enzyme [Streptococcus parasanguinis
ATCC 15912]
gi|296431991|gb|EFH17794.1| YggS family pyridoxal phosphate enzyme [Streptococcus parasanguinis
ATCC 15912]
Length = 222
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 18/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + +Q++E A R +D V+++AV+K VD + G EN++ +
Sbjct: 1 MNLIENADLVRQQVETVRNKANR-QDQVNVIAVTKYVDVATTEALVKTGIQHIGENRVDK 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
+K+ L KE+++ IGSLQ KV ++++ D + K L+ E+ K++
Sbjct: 60 FLEKYQAL-KEYELTWHLIGSLQRRKVKDVINFVDYFHALDSVK----LAQEIQKRAEHP 114
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ ++QVN E K G P++ D + Q ++ + GLM + P + + + S+
Sbjct: 115 IKCFLQVNISGEESKHGFAPDELDDVLAEIAQLDKIEIVGLMTMAPFEASQEELQDIFSK 174
Query: 180 IARECK-----------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ K ++LSMGM+RDFE+AIA+GAT VRIG+ F
Sbjct: 175 THQLQKQLEKKQLKNMPFSELSMGMSRDFEVAIANGATYVRIGTSFF 221
>gi|319955722|ref|YP_004166989.1| hypothetical protein Celal_4250 [Cellulophaga algicola DSM 14237]
gi|319424382|gb|ADV51491.1| protein of unknown function UPF0001 [Cellulophaga algicola DSM
14237]
Length = 216
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 114/231 (49%), Gaps = 28/231 (12%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + LQ K A P ++V+LVAVSK + A GQ IF ENK+QE
Sbjct: 1 MSIAHNLQKIK---------ASLP-ENVTLVAVSKTKPIPDLVEAYEVGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW L K D+Q IG +Q+NKV + ++ V K ++ + K R +
Sbjct: 51 MTQKWEELPK--DIQWHMIGHVQTNKVKYMAEYVHLVHGVDSFKLLKEINKQAKKYDRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ----LNVEGLMCIPPAMGNPK----- 171
+Q++ E K G+ ++ + F IL +++ +N++GLM + N
Sbjct: 109 NCLLQIHIAEEDTKFGL--DKEELFAILDSDEFKALNNINIKGLMGMATFTENEDQVRRE 166
Query: 172 ----PHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LS I + L LSMGM+ D+++AI G+T VRIGS IFG R
Sbjct: 167 FKSLKTLFDLSTIKLD-HLDTLSMGMSGDYKMAIEEGSTMVRIGSSIFGSR 216
>gi|284030824|ref|YP_003380755.1| alanine racemase domain-containing protein [Kribbella flavida DSM
17836]
gi|283810117|gb|ADB31956.1| alanine racemase domain protein [Kribbella flavida DSM 17836]
Length = 241
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 103/230 (44%), Gaps = 16/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L LQ + +I + A R +DSV+LVA++K + +R + G EN+ QE K
Sbjct: 12 LRENLQKARDRIGAACRAAGRAEDSVTLVAITKTFPIEDVRTLAALGVTDVGENREQELK 71
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K P D+ F+G LQSNK +V L V+ +V R+ S LS + + + +
Sbjct: 72 AK-AP--DTSDLTWHFVGQLQSNKARSVVRLAQVVHSVDRKSLVSALSKAAVAEQKTMRC 128
Query: 123 YIQVN--------TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
+QV+ + G+ P + + L + G+M + P +P F
Sbjct: 129 LLQVSLAEYGSAEAATGTSRGGVTPADVPELAAAVAEADGLELGGVMAVAPLGADPDEAF 188
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L ++ + +S GMT D + AI GAT VR+G + G RP
Sbjct: 189 AALRAVSSRLRSEHAGAGWISAGMTGDLDAAIRQGATHVRLGRALLGTRP 238
>gi|304437222|ref|ZP_07397182.1| YggS family pyridoxal phosphate enzyme [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304369714|gb|EFM23379.1| YggS family pyridoxal phosphate enzyme [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 239
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 108/226 (47%), Gaps = 17/226 (7%)
Query: 8 QVFKQKIENSAILAKR---PKDS-VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
Q+ K + E A A+R KD+ V L+AV+K ++ A+ G + EN++QEA
Sbjct: 10 QIQKVRAEIMAARARRTHVSKDAPVELIAVTKNHPVAAMQEAIDAGIMNIGENRIQEALD 69
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K L +E V+ IG LQ+NK V FD+I +V A ++ K + +
Sbjct: 70 KAETLERE--VKWHLIGHLQTNKAKYAVRQFDLIHSVDSVHLAQAVNRAAEKFGKVQNIL 127
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVN E KSG+ + + + ++G MCI P + +P F + E+
Sbjct: 128 VQVNLAREESKSGVYREDLDELLAAIDGMDSVRLQGFMCIAPNYEDVEQCRPLFRAMYEL 187
Query: 181 ARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
K + LSMGMT D+ +A+ GA VR+G+ IFG R
Sbjct: 188 YGTIKAAEPHKADIRYLSMGMTHDYRIAVEEGANLVRVGTAIFGAR 233
>gi|241888743|ref|ZP_04776050.1| pyridoxal phosphate enzyme, YggS family [Gemella haemolysans ATCC
10379]
gi|241864766|gb|EER69141.1| pyridoxal phosphate enzyme, YggS family [Gemella haemolysans ATCC
10379]
Length = 225
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 23/230 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ- 59
M++ + ++I + A R D V L+AV+K V ++ AL G FAEN+ Q
Sbjct: 1 MNVRENFETITREIAETCKQAGRNADEVKLIAVTKYVTDARVEEALEAGITDFAENRPQN 60
Query: 60 --EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K K+ K W IGSLQ+ KV ++++ D + R+ A + K+
Sbjct: 61 YVERKGKYSD--KTW----HLIGSLQTRKVRDVINEVDYFHALDRDSLAKEIEKRAEKE- 113
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
+ ++QVN E K G+ + DF+ Q ++ V GLM + P + + + F
Sbjct: 114 --IKCFVQVNVSGEESKHGLTSEEAIDFIRSLEQYSKIKVVGLMTMAPFVEDEEILRNCF 171
Query: 175 YLLSEIARECKLTKL--------SMGMTRDFELAIASGATSVRIGSGIFG 216
L ++ E K L SMGM+ D+++AI GAT +R+G+ + G
Sbjct: 172 RKLRQLRDEVKGLDLPYAPCEFLSMGMSNDYKIAIEEGATHIRVGTALVG 221
>gi|206900542|ref|YP_002250962.1| hypothetical protein DICTH_1123 [Dictyoglomus thermophilum H-6-12]
gi|206739645|gb|ACI18703.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12]
Length = 235
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 107/205 (52%), Gaps = 16/205 (7%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R +++VAVSK V + IR A+ G EN++QEA+KK I L + + +G L
Sbjct: 27 RDPSEINVVAVSKGVPPEGIREAVKVGIKAIGENRVQEAEKK-ISLLSDLSCEWHMVGHL 85
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q NKV + ++LF +I +V + A L+ K+ + + V IQ+N E K G +
Sbjct: 86 QKNKVKKAINLFSLIHSVDTFELAEELNKYAEKEEKEVDVLIQLNLSEEPTKYGF---KE 142
Query: 143 KDFVILCRQKYQ---LNVEGLMCIPPAMGNPKP------HFYLLSEIARE---CKLTKLS 190
++F + + ++ LNV+GLM I P G+ Y + E +E L LS
Sbjct: 143 EEFWKVYEKIFELKNLNVKGLMTIGPLTGDKNEVRKVFRKLYTIWEKLKENTKLSLPYLS 202
Query: 191 MGMTRDFELAIASGATSVRIGSGIF 215
MGM+ DFE+AI GA +R+G IF
Sbjct: 203 MGMSEDFEIAIEEGANLLRLGRIIF 227
>gi|120435023|ref|YP_860709.1| alanine racemase [fragment] [Gramella forsetii KT0803]
gi|117577173|emb|CAL65642.1| alanine racemase [fragment] [Gramella forsetii KT0803]
Length = 219
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 101/205 (49%), Gaps = 16/205 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+SV LVA+SK ++ + A + GQ IF ENK+QE KW L K D+Q +G Q N
Sbjct: 16 ESVKLVAISKTKPNEDLMEAYNAGQRIFGENKIQEMTDKWEELPK--DIQWHMVGHTQRN 73
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV + ++I V K ++ + R + +Q+ E K G+ + +
Sbjct: 74 KVKYMAPYVNLIHAVDSLKLLKEINKRARQNERTIDCLLQIKIAEEDSKFGLDSEEANE- 132
Query: 146 VILCRQKY----QLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-----LTKLSMGM 193
IL + Y +N+ GLM + + K F L + + K L +LSMGM
Sbjct: 133 -ILKSEAYSKMEHVNIIGLMGMATFTDDEEQVKSEFNYLKSVFDKFKEQYPELKELSMGM 191
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D+++A+A G T VRIGS IFG R
Sbjct: 192 SGDYQVAVACGTTMVRIGSSIFGAR 216
>gi|329121443|ref|ZP_08250067.1| cell division protein YlmE [Dialister micraerophilus DSM 19965]
gi|327469358|gb|EGF14828.1| cell division protein YlmE [Dialister micraerophilus DSM 19965]
Length = 233
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 15/205 (7%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK--EWDVQLRFIGSL 82
K V+LVAV+K ++ A+ CG EN++QE ++K+ L+K W++Q G L
Sbjct: 25 KQDVTLVAVTKFHSLAEMEEAIDCGITYVGENRVQEMEQKYRLLQKPVHWNLQ----GHL 80
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q NKV +++++ +I + ++ + V ++ N E K G+ P +
Sbjct: 81 QKNKVKKVIAMDCLIHSGDSLSILKEINKRAAAIGKVQDVLLEFNISGEETKHGLKPEEF 140
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLSEIARECK-------LTKLSMGM 193
++ V L ++ + V GLMC+ P G +P F E+ + K ++ LSMGM
Sbjct: 141 EEAVQLAKELPNICVRGLMCMAPEEGEDVIRPVFKKGHEMWEKLKEYFPKGQISILSMGM 200
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ DFE+AI G+ VR+G+ IFG R
Sbjct: 201 SGDFEIAIEEGSNMVRVGTAIFGAR 225
>gi|126640948|ref|YP_001083932.1| hypothetical protein A1S_0898 [Acinetobacter baumannii ATCC 17978]
Length = 185
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 86/178 (48%), Gaps = 7/178 (3%)
Query: 47 SCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA 106
+ GQ F EN LQEA K I ++ D++ FIG +Q NK + FD + V R A
Sbjct: 3 AAGQRAFGENYLQEALDK-IDALQDLDIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIA 61
Query: 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-- 164
LS + L + +QVN + K G P + V Q ++ + GLM IP
Sbjct: 62 ERLSNQCGDDQAALNICLQVNIDGQESKDGCAPEDVAELVAQMSQLPKIKLRGLMVIPAP 121
Query: 165 ---PAMGNPKPHFYLLS-EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A + K F + + A LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 122 DNTAAFADAKKLFDAVKVQHAHPEDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGAR 179
>gi|237752208|ref|ZP_04582688.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229376450|gb|EEO26541.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 222
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 115/213 (53%), Gaps = 14/213 (6%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK- 70
++IE + I R + V LVAVSK ++I +CGQ F ENK+Q+ ++K L
Sbjct: 14 ERIEKARIAVDRRR-IVQLVAVSKYSTQEEIATLYACGQRAFGENKVQDLQQKASTLEAL 72
Query: 71 --EWDVQLRFIGSLQSNKVSEIVSLFD-VIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
EW FIGSLQSNK++ ++ L +++++ + A L + ++++ L +QVN
Sbjct: 73 PLEW----HFIGSLQSNKINALLQLKPYLLQSLHSLELAQALQSRLERENQQLNALLQVN 128
Query: 128 TGYEIQKSGIMPN-QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE 183
+ E+ KSG MP + + + + + + GLM I + + F L + +
Sbjct: 129 SAKEVSKSGFMPEVALEAYARIKGECKNIKLCGLMSIGAHTEDKALVQKSFELTQNLFSQ 188
Query: 184 CKLTK-LSMGMTRDFELAIASGATSVRIGSGIF 215
K + LSMGM+ DFELAIA G+ VR+GS +F
Sbjct: 189 IKGAEVLSMGMSGDFELAIACGSNCVRLGSTLF 221
>gi|119960860|ref|YP_947475.1| alanine racemase N-terminal domain-containing protein [Arthrobacter
aurescens TC1]
gi|119947719|gb|ABM06630.1| putative alanine racemase, N-terminal domain protein [Arthrobacter
aurescens TC1]
Length = 252
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++L + +++IE +A+ A D L+ V+K + +R ++ G EN+ QEA
Sbjct: 23 LADRLGLVRRRIE-AAVHAAGRTDPPKLIVVTKFHPAADVRRLVALGVTDVGENRDQEAA 81
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF--- 119
K + L + DV+ FIG LQSNK +V ++++ R + L + ++
Sbjct: 82 SKSVEL-ADVDVRWHFIGQLQSNKAKSVVKYAHSVQSIDRPQVVDALVKAIAREKGATGR 140
Query: 120 --LPVYIQVNTGYEI--QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
L +IQV+ + + G P+ + L + GLM + P +P F
Sbjct: 141 SDLDCFIQVSLDDDAGAHRGGADPSDVEVLAEKIESADGLRLSGLMAVAPLGADPNAAFE 200
Query: 176 LLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ I+ + T +S GM++D E A+ GAT +RIGS I G RP
Sbjct: 201 KLAGISEALRAVHPAATGISAGMSQDLEAAVTFGATHLRIGSDILGSRPA 250
>gi|260435963|ref|ZP_05789933.1| pyridoxal phosphate enzyme, YggS family [Synechococcus sp. WH 8109]
gi|260413837|gb|EEX07133.1| pyridoxal phosphate enzyme, YggS family [Synechococcus sp. WH 8109]
Length = 255
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 106/207 (51%), Gaps = 11/207 (5%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQL 76
A+ A RP S L+AVSK + +R GQ F E+++QEA +P ++E D+ L
Sbjct: 46 ALQAARPSSS-RLLAVSKGHPAASVRCVAELGQCDFGESRVQEA----LPKQEELIDLNL 100
Query: 77 R--FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
R FIG LQSNKV +V FDVI +V A +S +++ R V +QV + K
Sbjct: 101 RWHFIGRLQSNKVRPVVKAFDVIHSVDSLALAERVSRIAVEEGRQPEVLLQVKLHPDPSK 160
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECKLTKLSM 191
G+ + + L + GLM + P A+G K F +A L + SM
Sbjct: 161 GGLSAGELGAIWSDLQALPGLRISGLMTMAPLDMAIGQRKELFSDCRALADRLALAECSM 220
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D++ A +G+T +RIGS +FG R
Sbjct: 221 GMSTDWKEAAEAGSTWLRIGSVLFGPR 247
>gi|303239841|ref|ZP_07326364.1| alanine racemase domain protein [Acetivibrio cellulolyticus CD2]
gi|302592551|gb|EFL62276.1| alanine racemase domain protein [Acetivibrio cellulolyticus CD2]
Length = 235
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 13/223 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + + K+E +AI + R + ++++ VSK V+ +KI A+ G EN++QE +K+
Sbjct: 12 LDIIRGKVERAAIKSGRKLEDITIIGVSKTVEPEKIIRAIDEGITELGENRVQELTEKYD 71
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ + + L IG LQ+NKV +V +I +V R A + K + + + +QV
Sbjct: 72 IINRSCNWHL--IGHLQTNKVKYVVDKVKMIHSVDRYDLALEIHNRAKKIGKVVDILVQV 129
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-------E 179
N E K G+ P+ + + + V G M + P NP+ + S +
Sbjct: 130 NISGEKSKFGVSPDGALELIKQIVTLENVRVRGFMTMAPFASNPEKVRNVFSGLRKLSID 189
Query: 180 IARE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I +E + LSMGM+ D+E+AI GA VRIG+ +FG+R
Sbjct: 190 IEKENINNIVIDYLSMGMSNDYEIAIEEGANLVRIGTALFGQR 232
>gi|21232187|ref|NP_638104.1| hypothetical protein XCC2756 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767684|ref|YP_242446.1| hypothetical protein XC_1357 [Xanthomonas campestris pv. campestris
str. 8004]
gi|21113943|gb|AAM42028.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66573016|gb|AAY48426.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 227
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 92/200 (46%), Gaps = 15/200 (7%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---EWDVQLRFIGSLQSNK 86
L+AVSK + + + GQ F EN +QEA K L+ EW IG LQSNK
Sbjct: 26 LLAVSKTQPADAVAGLAAQGQQAFGENYVQEAATKIAQLQALQLEW----HLIGHLQSNK 81
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
FD ++TV R K +LL+ L V IQVN E K G P
Sbjct: 82 ADMASQCFDWVQTVDRAKLIALLARHRPDGRAPLNVLIQVNIDDEDSKHGCAPEAIDVLA 141
Query: 147 ILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI-----ARECKLTKLSMGMTRDFE 198
L + GLM IP P + F + + ++ + LSMGM+ DF
Sbjct: 142 AEIATHPPLQLRGLMAIPAPFPEVTRRHQAFARMQALFATLRSQYPQADTLSMGMSADFA 201
Query: 199 LAIASGATSVRIGSGIFGER 218
AIA+GAT VR+G+ +FG+R
Sbjct: 202 DAIAAGATMVRVGTALFGQR 221
>gi|294787206|ref|ZP_06752459.1| pyridoxal phosphate enzyme, YggS family [Parascardovia denticolens
F0305]
gi|315227251|ref|ZP_07869038.1| TIM-barrel fold protein [Parascardovia denticolens DSM 10105]
gi|294484562|gb|EFG32197.1| pyridoxal phosphate enzyme, YggS family [Parascardovia denticolens
F0305]
gi|315119701|gb|EFT82834.1| TIM-barrel fold protein [Parascardovia denticolens DSM 10105]
Length = 262
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 106/220 (48%), Gaps = 24/220 (10%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE----AKKKWIPLRKEW---- 72
+RP D V L+A K + +I A+ G + EN+ QE A R+E
Sbjct: 42 GRRPSD-VRLLAAVKTRNVGEIMAAVKTGVRLLGENRPQEVMAVASGLAQACREEGLDLG 100
Query: 73 -DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
V IG LQSNK+++I+ L +E+V + LS ++ L V+++VN E
Sbjct: 101 EQVGFHLIGQLQSNKINKILGLVSTVESVDSLELGVKLSSRAVRAGLSLDVFLEVNVSGE 160
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLTK 188
KSG P + +D Q L V GLM + + + + F L I RE L++
Sbjct: 161 EAKSGCRPQEAEDLAFALAQLPNLVVRGLMTVGAHVDDEAQVRSGFAHLRRI-REGILSQ 219
Query: 189 ----------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D+ LAIA GAT VR+G+ +FG+R
Sbjct: 220 GEAGLDSCRDLSMGMSGDYPLAIAEGATIVRLGTALFGQR 259
>gi|160891909|ref|ZP_02072912.1| hypothetical protein BACUNI_04367 [Bacteroides uniformis ATCC 8492]
gi|156858387|gb|EDO51818.1| hypothetical protein BACUNI_04367 [Bacteroides uniformis ATCC 8492]
Length = 221
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 107/214 (50%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+L++ P V LVAVSK ++ I A GQ +F E+K+QE K+ L K D++ F
Sbjct: 9 VLSELP-GKVRLVAVSKFHPNEAIEEAYRAGQRVFGESKVQEMTAKYESLPK--DIEWHF 65
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK+ IV +I + K + + + K + + +Q++ E K G
Sbjct: 66 IGHLQTNKIKYIVPYVALIHGIDSYKLLAEVDKQAAKAGKTVNCLLQLHIAREETKFGFS 125
Query: 139 PNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-------- 185
++ ++ + R+ + + GLM + N K F LS E K
Sbjct: 126 FDECREMLAAGEWRELKHIRICGLMGMATNTDNDEQIKTEFCSLSSFFNEVKAKWFADAE 185
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AIA+G+T +R+GS IFGER
Sbjct: 186 SFRELSMGMSHDYHEAIAAGSTLIRVGSKIFGER 219
>gi|116328682|ref|YP_798402.1| PLP dependent enzyme [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116330661|ref|YP_800379.1| PLP dependent enzyme [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|116121426|gb|ABJ79469.1| PLP dependent enzyme [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116124350|gb|ABJ75621.1| PLP dependent enzyme [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 222
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 113/208 (54%), Gaps = 16/208 (7%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK---WIPLRKEWDVQLRFI 79
RP++ +L+AVSK +K++ A++ G + F EN++QE +K W+ K+ + L I
Sbjct: 18 RPENPPTLIAVSKFQSLEKVKEAVNAGILHFGENRIQEGIEKFSEWLR-NKDTSLILHHI 76
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G +QS + ++ + V + L K+ + + ++Q N E K G+
Sbjct: 77 GPVQSGTLRKLFLGYSYAHGVGAMGIVNELLNRAKKEQKNIRYFLQANLTGEDTKHGV-- 134
Query: 140 NQTKDFVILCRQKYQLN-----VEGLMCIPPAMGNP---KPHFYLLSEIARE-CKLTKLS 190
+ K+ + + +QK L+ +EGLM + P+ G+P K F LS+I ++ KLS
Sbjct: 135 -ERKELIGILKQKENLSNAYCKLEGLMVMGPSDGDPTKTKEVFRELSKIRKDYIPEAKLS 193
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGM+ D+++AI G+ VRIGS IFGER
Sbjct: 194 MGMSGDYKIAIEEGSDFVRIGSAIFGER 221
>gi|162456467|ref|YP_001618834.1| hypothetical protein sce8184 [Sorangium cellulosum 'So ce 56']
gi|161167049|emb|CAN98354.1| conserved hypothetical protein UPF0001 [Sorangium cellulosum 'So ce
56']
Length = 247
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 96/200 (48%), Gaps = 7/200 (3%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ V L+AVSK ++ IR A + GQ F EN QE +K L + IG LQ N
Sbjct: 47 EEVRLIAVSKGKPAEAIRAAYAAGQRDFGENYAQELVEKAEALADLDGLVWHAIGQLQRN 106
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
K + + V+++V RE+ A L +R L V I+VN G E K G
Sbjct: 107 KAKLVARVAHVVQSVDREELAVELDRRAAALNRTLDVLIEVNVGGEASKGGCASGDFAPL 166
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEI----ARECKLTKLSMGMTRDFE 198
+ + L GLM I P + +P P F L + L +LSMGM+ DFE
Sbjct: 167 LAAIARCAHLRPIGLMTIAPFLEDPNDVAPFFAQLRALRDAHGGRAVLPELSMGMSHDFE 226
Query: 199 LAIASGATSVRIGSGIFGER 218
AIA GAT +R+G+ IFG R
Sbjct: 227 AAIAEGATWIRVGTAIFGAR 246
>gi|313891355|ref|ZP_07824971.1| pyridoxal phosphate enzyme, YggS family [Dialister microaerophilus
UPII 345-E]
gi|313120130|gb|EFR43306.1| pyridoxal phosphate enzyme, YggS family [Dialister microaerophilus
UPII 345-E]
Length = 233
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 15/205 (7%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK--EWDVQLRFIGSL 82
K V+LVAV+K ++ A+ CG EN++QE ++K+ L+K W++Q G L
Sbjct: 25 KQDVTLVAVTKFHSLAEMEEAIDCGITYVGENRVQEMEQKYRLLQKPVHWNLQ----GHL 80
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q NKV +++++ +I + ++ + V ++ N E K G+ P +
Sbjct: 81 QKNKVKKVIAMDCLIHSGDSLSILKEINKRAAAIGKVQDVLLEFNISGEETKHGLKPEEF 140
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLSEIARECK-------LTKLSMGM 193
++ V L ++ + V GLMC+ P G +P F E+ + K ++ LSMGM
Sbjct: 141 EEAVQLAKELPNICVRGLMCMAPEEGEDVIRPVFKKGHEMWEKLKEYFPKGQVSILSMGM 200
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ DFE+AI G+ VR+G+ IFG R
Sbjct: 201 SGDFEIAIEEGSNMVRVGTAIFGAR 225
>gi|153940535|ref|YP_001390813.1| hypothetical protein CLI_1549 [Clostridium botulinum F str.
Langeland]
gi|168180123|ref|ZP_02614787.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum
NCTC 2916]
gi|226948801|ref|YP_002803892.1| hypothetical protein TIGR00044 [Clostridium botulinum A2 str.
Kyoto]
gi|152936431|gb|ABS41929.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum F
str. Langeland]
gi|182669171|gb|EDT81147.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum
NCTC 2916]
gi|226841352|gb|ACO84018.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum A2
str. Kyoto]
gi|295318882|gb|ADF99259.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum F
str. 230613]
gi|322805782|emb|CBZ03347.1| hypothetical protein YggS, proline synthase co-transcribed
bacterial homolog PROSC [Clostridium botulinum H04402
065]
Length = 223
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 101/205 (49%), Gaps = 11/205 (5%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
PKD V+L+ VSK + I A G F ENK+QE K +++ D++ IG LQ
Sbjct: 15 PKD-VTLIGVSKTKPVEYIEEAYEAGLRDFGENKVQELIDKIEYFKEKKDIRWHLIGHLQ 73
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NKV IV +I ++ + + + KQ++ V IQ+N G E K GI
Sbjct: 74 RNKVKYIVGKVYLIHSLDSIRLLEEIEDKYKKQNKIANVLIQINIGKEESKYGIYKEDLG 133
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPK--PHFYLLSEI--------ARECKLTKLSMGM 193
+ + + + +GLM I P + + +F + EI + ++ LSMGM
Sbjct: 134 NMIDAIEKCENVKAKGLMTIIPKGSDEECAKYFRQMKEIFSALQNKSFKNIEVNYLSMGM 193
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
T D+ +AI G+ +R+G GIFG+R
Sbjct: 194 TGDYPIAIKEGSNMIRVGQGIFGKR 218
>gi|160880494|ref|YP_001559462.1| alanine racemase domain-containing protein [Clostridium
phytofermentans ISDg]
gi|160429160|gb|ABX42723.1| alanine racemase domain protein [Clostridium phytofermentans ISDg]
Length = 253
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 112/239 (46%), Gaps = 32/239 (13%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE---AKKKWIPL 68
QKIE + + R K+ V+L+AVSK + + A G F ENK+QE +K++P
Sbjct: 11 QKIEAACKRSNRSKEEVTLIAVSKTKPFEMLMEAYHAGLREFGENKVQELCDKCEKFVPE 70
Query: 69 ------------RKEWDVQL------RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS 110
+D L IG LQ NKV IV +I +V + A +
Sbjct: 71 SSSAPISITQLDNSSYDSNLSPEINWHMIGHLQRNKVKYIVDKVKLIHSVDSFRLAEQID 130
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
+E K+ + + +++N E K G+ P+ + + + V+GLM + P N
Sbjct: 131 IEAKKKGVLVDILVEINIADEESKFGVKPSAVETLIREIASLSSICVKGLMTVAPFTENA 190
Query: 171 KPHFYLLSEIAR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +++ + + LSMGMT D+E+AI G+T VR+G+GIFGER
Sbjct: 191 EENRTYFNKMHQLYVDINEKNIDNVSMKILSMGMTGDYEVAIEEGSTMVRVGTGIFGER 249
>gi|242211403|ref|XP_002471540.1| predicted protein [Postia placenta Mad-698-R]
gi|220729399|gb|EED83274.1| predicted protein [Postia placenta Mad-698-R]
Length = 259
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 128/249 (51%), Gaps = 46/249 (18%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKW 65
Q +Q I +SA + ++P +LVAVSK + + GQ+ F EN +QE K +
Sbjct: 15 QRVRQAIASSAPVDRQP----TLVAVSKYKPASDVLACFELGQIDFGENYVQELVDKAEQ 70
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEM-IKQSRFLPV 122
+P D++ FIG+LQSNK + S+ ++ ++TV+ K A+ L+ + +++ L V
Sbjct: 71 LPT----DIRWHFIGTLQSNKAKILASIPNLYAVQTVTSTKAATALNKALPAERASPLNV 126
Query: 123 YIQVNTGYEIQKSGIMP---NQTK-DFVILCRQKY----QLNVEGLMCIP------PAMG 168
+QVNT E KSG+ P + T+ D V L R +L+++GLM I +
Sbjct: 127 LVQVNTSGEDNKSGLPPLPSDATEPDLVQLARHIIVECPRLHLQGLMTIGSLTESLSSTE 186
Query: 169 NPKPHFY-------LLSE-IARECKLTK-----------LSMGMTRDFELAIASGATSVR 209
P F LL E +A+ LT LSMGM+ DFE A+ SG+ VR
Sbjct: 187 KPNEDFERLVRTRDLLQEALAQAGFLTDGGRWGEGGKLLLSMGMSSDFEAALNSGSDIVR 246
Query: 210 IGSGIFGER 218
+G+GIFG R
Sbjct: 247 VGTGIFGTR 255
>gi|327405566|ref|YP_004346404.1| hypothetical protein Fluta_3597 [Fluviicola taffensis DSM 16823]
gi|327321074|gb|AEA45566.1| protein of unknown function UPF0001 [Fluviicola taffensis DSM
16823]
Length = 220
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 112/236 (47%), Gaps = 34/236 (14%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL ++L KQ+I PKD V LVAVSK + ++ A GQ +F ENK+QE
Sbjct: 1 MSLADRLTQLKQEI---------PKDVV-LVAVSKTKPAALVQEAYDAGQRVFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KW L K D++ IG LQ+NKV I +I +V K ++ + K +R +
Sbjct: 51 LVDKWEVLPK--DIEWHLIGHLQTNKVKFIAPFVSLIHSVDSFKLLQEINKQGEKNNRII 108
Query: 121 PVYIQVNTGYEIQKSGIMPN------QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP-- 172
P +Q + E K G Q K+F+ + +++ GLM + + N +
Sbjct: 109 PCLLQFHIAQEETKFGFSFEEVEELLQNKEFI----EMNHVSITGLMGMASFVENQEQIQ 164
Query: 173 ------HFYLL----SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
H Y + +SMGM+ D++LAI G+T +R+GS +FG R
Sbjct: 165 DEFRNLHNYFAIIKSNYFKYNPDFKVISMGMSGDYKLAIDEGSTMIRVGSSLFGSR 220
>gi|170078522|ref|YP_001735160.1| hypothetical protein SYNPCC7002_A1917 [Synechococcus sp. PCC 7002]
gi|169886191|gb|ACA99904.1| conserved hypothetical protein TIGR00044 [Synechococcus sp. PCC
7002]
Length = 222
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 107/217 (49%), Gaps = 15/217 (6%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
EN A L + V L+AVSK + KIR+A + G F EN+ QEA++K L D+
Sbjct: 7 ENIARLREEIPPEVRLIAVSKTHSAAKIRLAYAAGIRDFGENRFQEAQQKQAELEDLPDI 66
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
+ FIG LQ NK + ++ FD I TV A L +Q+ + K
Sbjct: 67 RWHFIGHLQKNKAKKAITHFDWIHTVDSLALAQKLDQYAADLENPARCCLQIKPLPDPNK 126
Query: 135 SGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH--------FYLLSEIAREC- 184
G +P + L ++ L ++GLM I P +G + F L ++ +
Sbjct: 127 FGWEIPQLLSELPQLATCQH-LKLQGLMTILP-LGLSRTETRTAFKQIFSLKEQLNQMAS 184
Query: 185 ---KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LT+LSMGM+ D+ LAI +GAT +R+G GIFG R
Sbjct: 185 LPEQLTELSMGMSGDYPLAIEAGATMIRVGQGIFGAR 221
>gi|23098934|ref|NP_692400.1| hypothetical protein OB1479 [Oceanobacillus iheyensis HTE831]
gi|22777162|dbj|BAC13435.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 223
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 115/229 (50%), Gaps = 20/229 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ + L ++ I + A R + + L+AV+K V ++ + A++ G EN+ +
Sbjct: 2 VDVATNLSNIQENIRQACANANRSPEDIRLIAVTKYVTIERTKEAINAGIDNLGENRNEG 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ ++ + V FIGSLQS KV +I++ D I ++ R+ A ++ + + +
Sbjct: 62 FLEKYNEIQNQ--VNWHFIGSLQSRKVKDIINQVDFIHSLDRKSLAKEINK---RATHPV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K GI P++ F+ + + GLM + P + +P + F L
Sbjct: 117 NCFVQVNVSGEESKHGIFPDEVISFIKSLSGYENIKIVGLMTMAPHVEDPEDVRSVFKKL 176
Query: 178 SEIARECKLTK----------LSMGMTRDFELAIASGATSVRIGSGIFG 216
++ E +TK LSMGM+ D+ +AI GAT VRIGS + G
Sbjct: 177 RDLRDE--ITKKELPHAPCEWLSMGMSNDYHIAIEEGATHVRIGSKLVG 223
>gi|317014443|gb|ADU81879.1| hypothetical protein HPGAM_05440 [Helicobacter pylori Gambia94/24]
Length = 222
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 111/224 (49%), Gaps = 34/224 (15%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-- 70
KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K K L
Sbjct: 14 KIEKARIAYSR-HHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKTKMHSLEHLP 72
Query: 71 -EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR----------- 118
EW IGSLQ NK++ ++SL K A L SL+ +K +
Sbjct: 73 LEW----HMIGSLQENKINALLSL----------KPALLHSLDSLKLALNIEKRCETLGV 118
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HF 174
L +QVN+ YE KSG++P + + + + +L ++GLMCI + K F
Sbjct: 119 TLNALLQVNSAYEESKSGVVPEEALETYSQISETCKRLKLKGLMCIGAHTDDEKKIERSF 178
Query: 175 YLLSEIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ + K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 179 ITTKKLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|315586948|gb|ADU41329.1| YggS family pyridoxal phosphate enzyme [Helicobacter pylori 35A]
Length = 222
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 114/225 (50%), Gaps = 36/225 (16%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-- 70
KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K K L
Sbjct: 14 KIEKARIAYSRHH-IVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKIKMRSLEHLP 72
Query: 71 -EWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV----YI 124
EW IGSLQ NK++ ++SL ++ ++ K L+L++ K+ L V +
Sbjct: 73 LEW----HMIGSLQENKINALLSLKPALLHSLDSLK----LALKIEKRCEILGVNLNALL 124
Query: 125 QVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
QVN+ YE KSG++P +T + + + L ++GLMCI + K EI +
Sbjct: 125 QVNSAYEESKSGVVPEETLEIYSQISETCKHLKLKGLMCIGAHADDEK-------EIEKS 177
Query: 184 CKLTK-----------LSMGMTRDFELAIASGATSVRIGSGIFGE 217
TK LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 178 FITTKKLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|228471405|ref|ZP_04056200.1| pyridoxal phosphate enzyme, YggS family [Porphyromonas uenonis
60-3]
gi|228306779|gb|EEK15905.1| pyridoxal phosphate enzyme, YggS family [Porphyromonas uenonis
60-3]
Length = 221
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 107/209 (51%), Gaps = 24/209 (11%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V LVAVSK + +R A GQ +F EN+ QE +K P E D+Q FIG+LQ NKV
Sbjct: 17 VQLVAVSKFHPVESVREAYEAGQRLFGENRAQELAEK-APQLPE-DIQWHFIGTLQRNKV 74
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQS----RFLPVYIQVNTGYEIQKSGIMPNQ-- 141
IV +IE+V E SLL E++KQ+ R L + +Q E KSG+ +
Sbjct: 75 KYIVPYVSLIESVDSE---SLLQ-EIVKQANRFDRQLRILLQYKIAQEESKSGLDHAELL 130
Query: 142 --TKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-------LTKL 189
++ + ++ + GLM + + + F L + E + +L
Sbjct: 131 ALVDHYLATPEWRERITICGLMGMATLTADKEQVRHEFDTLRALQTELRERYPDISWDEL 190
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMGM+ D+ LA+ +G+T VRIG+ IFGER
Sbjct: 191 SMGMSNDWPLAVEAGSTIVRIGTAIFGER 219
>gi|312131524|ref|YP_003998864.1| alanine racemase domain protein [Leadbetterella byssophila DSM
17132]
gi|311908070|gb|ADQ18511.1| alanine racemase domain protein [Leadbetterella byssophila DSM
17132]
Length = 217
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 110/230 (47%), Gaps = 26/230 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++L+ +Q+I SV L+AVSK + A +CGQ F EN +QE
Sbjct: 1 MSISDRLRALRQEI----------PPSVDLIAVSKFKPVADLEEAYACGQRDFGENYVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L K DV+ FIG LQ+NKV I +I +V K + + + R +
Sbjct: 51 LVEKESALPK--DVRWHFIGHLQTNKVKYIAPFVHLIHSVDSLKLLKEIQKQGASKGRII 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ----LNVEGLM---CIPPAMGNPKPH 173
V +Q + E K+G + K+ IL Q + VEGLM +
Sbjct: 109 SVLLQAHIAEEESKTGFDIEELKE--ILQSGTLQTFPNVKVEGLMGMGTFTEDADQTRRE 166
Query: 174 FYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F ++EI E K L LSMGM+ D+++A+ G+ VRIGS IFG R
Sbjct: 167 FKHMAEIFEEAKQYEPGLKILSMGMSGDWKIAVEEGSNMVRIGSTIFGSR 216
>gi|157692218|ref|YP_001486680.1| hypothetical protein BPUM_1437 [Bacillus pumilus SAFR-032]
gi|157680976|gb|ABV62120.1| hypothetical protein BPUM_1437 [Bacillus pumilus SAFR-032]
Length = 229
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 15/227 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L+ ++I + A R D VS+VAV+K V ++ + A G + F EN+ Q
Sbjct: 1 MNVRENLRQINEQINEACKRAGRNPDDVSVVAVTKYVSIERAQEAKEAGILHFGENRDQG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + E + FIGSLQ+ KV ++ D + ++ R A+ + + R
Sbjct: 61 LLEKQASITDE-SINWHFIGSLQTRKVKSVIQTIDYLHSLDRISLANEIEKRVDHTVR-- 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVNT E K G+ FV ++ + GLM + P + + F L
Sbjct: 118 -CFVQVNTSLEESKHGLQSEDVIPFVKQLADFKKIEIAGLMTMAPFTDDHTVIRNCFKTL 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ +E K LSMGM+ DFE+AI GAT VRIGS + G
Sbjct: 177 KNLQKEVKHLNQVNAPCQHLSMGMSNDFEIAIEEGATFVRIGSSLVG 223
>gi|255936135|ref|XP_002559094.1| Pc13g06610 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583714|emb|CAP91730.1| Pc13g06610 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 268
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 120/248 (48%), Gaps = 46/248 (18%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKM-VDSKKIRVALSCG-QVIFAENKLQE--AKKKWI 66
+ ++ +A+ + P + LVAVSK+ S + + + G Q+ F EN LQE K + +
Sbjct: 20 RARVSTAALQSPIPSKPIRLVAVSKLKPASDALALHQTPGSQLHFGENYLQELLEKSRLL 79
Query: 67 PLRKEWDVQLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLL-------SLEMI-- 114
P +W FIG LQSNK ++ V +E+V EK A LL S EM
Sbjct: 80 PASIKW----HFIGGLQSNKCVTLARDVPGLWAVESVDSEKKAKLLDKGWGDRSPEMAAT 135
Query: 115 --KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR----QKYQLNVEGLMCIPP--- 165
+ L VY+QVNT E K+GI P LCR Q +L ++G M I
Sbjct: 136 NHDEDGRLRVYVQVNTSGEENKAGIEPAGA---AALCRYVREQCSRLKLQGFMTIGAIAR 192
Query: 166 ----AMGNPKPHFYLLSE----IARECKLT------KLSMGMTRDFELAIASGATSVRIG 211
+ N F LS+ + RE L +LSMGM+ DFE AIA G+ VR+G
Sbjct: 193 SRVTTVENENEDFVCLSDTRDRVVRELGLVGDEAALELSMGMSSDFEGAIALGSDQVRVG 252
Query: 212 SGIFGERP 219
+ IFG+RP
Sbjct: 253 TTIFGDRP 260
>gi|332300649|ref|YP_004442570.1| protein of unknown function UPF0001 [Porphyromonas asaccharolytica
DSM 20707]
gi|332177712|gb|AEE13402.1| protein of unknown function UPF0001 [Porphyromonas asaccharolytica
DSM 20707]
Length = 221
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 108/211 (51%), Gaps = 24/211 (11%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ V LVAVSK + +R A GQ +F EN+ QE +K P E D+Q FIG+LQ N
Sbjct: 15 EQVQLVAVSKFHPVESVREAYEAGQRLFGENRAQELAEK-APQLPE-DIQWHFIGTLQRN 72
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQS----RFLPVYIQVNTGYEIQKSGIMPNQ 141
KV IV +IE+V E +LL E++KQ+ R L + +Q E KSG+ +
Sbjct: 73 KVKYIVPYVSLIESVDSE---ALLQ-EIVKQANRFDRQLRILLQYKIAQEESKSGLDHTE 128
Query: 142 ----TKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-------LT 187
++ + ++ + GLM + + + F L + E +
Sbjct: 129 LLALVDHYLATPEWRERITICGLMGMATLTADKEQIRHEFDTLRALQTELRERYPEISWD 188
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ LA+ +G+T VRIG+ IFGER
Sbjct: 189 ELSMGMSSDWPLAVEAGSTIVRIGTAIFGER 219
>gi|116054125|ref|YP_788568.1| hypothetical protein PA14_05160 [Pseudomonas aeruginosa UCBPP-PA14]
gi|115589346|gb|ABJ15361.1| putative PLP dependent enzyme [Pseudomonas aeruginosa UCBPP-PA14]
Length = 230
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 96/211 (45%), Gaps = 6/211 (2%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I +A A R +V L+AVSK + +R A + G F EN LQEA K L +
Sbjct: 14 RIREAAQAAGRDPATVGLLAVSKTKPAAAVREAHAAGLRDFGENYLQEALGKQAEL-ADL 72
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
+ FIG +QSNK I F + +V R K A LS + L V +QVN E
Sbjct: 73 PLNWHFIGPIQSNKTRPIAEHFQWVHSVDRLKIAQRLSEQRPAGLPLLNVCLQVNVSGEA 132
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYL----LSEIARECKLT 187
KSG P +Q L + GLM IP P H + L
Sbjct: 133 SKSGCAPEDLPALAEAVKQLPNLRLRGLMAIPEPTAERAAQHAAFARLRELLLDLNLGLD 192
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D E AI GAT VRIG+ +FG R
Sbjct: 193 TLSMGMSDDLEAAIGEGATWVRIGTALFGAR 223
>gi|296112563|ref|YP_003626501.1| putative alanine racemase [Moraxella catarrhalis RH4]
gi|295920257|gb|ADG60608.1| putative alanine racemase [Moraxella catarrhalis RH4]
gi|326561327|gb|EGE11685.1| putative alanine racemase [Moraxella catarrhalis 7169]
gi|326567615|gb|EGE17728.1| putative alanine racemase [Moraxella catarrhalis 12P80B1]
gi|326569725|gb|EGE19775.1| putative alanine racemase [Moraxella catarrhalis BC8]
gi|326573019|gb|EGE22995.1| putative alanine racemase [Moraxella catarrhalis CO72]
Length = 236
Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 94/197 (47%), Gaps = 13/197 (6%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
L+AVSK I+ GQ F EN LQEA K I + + +IGS+Q NK +
Sbjct: 42 LIAVSKTKPVAMIQTLFHQGQQDFGENYLQEALGK-ISQLSQLPIIWHYIGSIQRNKTRD 100
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
I FD + T+ RE A L+ E + L V IQ+N E KSG P + +
Sbjct: 101 IAKHFDWVHTLEREIIAQRLN-EQRAGMQPLNVLIQINIDDESSKSGCKPTELPTLIEQI 159
Query: 150 RQKYQLNVEGLMCIP-----PAMGNPKPHFYLLSEIARECKL---TKLSMGMTRDFELAI 201
LN+ G+M IP A K L +AR L +SMGM+ D A+
Sbjct: 160 INYKNLNLRGVMVIPSQQTVDAFARTK---VLFDAMARRFDLPNWDTISMGMSGDMTQAV 216
Query: 202 ASGATSVRIGSGIFGER 218
A G+T VR+G+ IFGER
Sbjct: 217 AHGSTMVRVGTAIFGER 233
>gi|241598580|ref|XP_002404760.1| proline synthetase associated protein, putative [Ixodes scapularis]
gi|215500480|gb|EEC09974.1| proline synthetase associated protein, putative [Ixodes scapularis]
Length = 248
Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 121/237 (51%), Gaps = 21/237 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ + LQ+ ++K+ A +R LVAVSK ++ + A GQ F EN +QE
Sbjct: 8 VEIAKALQLVREKV--VAASKERSGPPARLVAVSKTKPAELLIAAYEEGQRHFGENYIQE 65
Query: 61 AKKKWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTA-SLLSLEMI 114
++K + +++ FIG LQ NKV+++ + ++ +ET+ KTA +L S +
Sbjct: 66 LEEKANSPEIQTACPEIKWHFIGRLQRNKVAKLAKVPNLFMVETLESSKTAMALNSCWAL 125
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV-ILCRQKYQLNVEGLMCIP----PAMGN 169
L V +QVNT E QK+G+ P + V + ++ L GLM I A
Sbjct: 126 NGLPPLNVMVQVNTSGEEQKNGVEPKEAASLVEFVLKECPNLKFSGLMTIGMAEYDATAG 185
Query: 170 PKPHFYLL----SEIARECKL----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P P F L E+ +E L +LSMGM+ D+E A+ G+T+VR+GS IFG R
Sbjct: 186 PNPDFVSLLKSREELCKELNLDVGAVELSMGMSADYEEAVRMGSTNVRVGSTIFGPR 242
>gi|326564235|gb|EGE14469.1| putative alanine racemase [Moraxella catarrhalis 46P47B1]
gi|326571669|gb|EGE21684.1| putative alanine racemase [Moraxella catarrhalis BC7]
Length = 236
Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 94/197 (47%), Gaps = 13/197 (6%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
L+AVSK I+ GQ F EN LQEA K I + + +IGS+Q NK +
Sbjct: 42 LIAVSKTKPVAMIQTLFHQGQQDFGENYLQEALGK-ISQLSQLPIIWHYIGSIQRNKTRD 100
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
I FD + T+ RE A L+ E + L V IQ+N E KSG P + +
Sbjct: 101 IAKHFDWVHTLEREIIAQRLN-EQRAGMQPLNVLIQINIDDESSKSGCKPTELPTLIEQI 159
Query: 150 RQKYQLNVEGLMCIP-----PAMGNPKPHFYLLSEIARECKL---TKLSMGMTRDFELAI 201
LN+ G+M IP A K L +AR L +SMGM+ D A+
Sbjct: 160 INYKNLNLRGVMVIPSQQTVDAFARTK---VLFDAMARRFDLPNWDTISMGMSGDMAQAV 216
Query: 202 ASGATSVRIGSGIFGER 218
A G+T VR+G+ IFGER
Sbjct: 217 AHGSTMVRVGTAIFGER 233
>gi|269792874|ref|YP_003317778.1| alanine racemase domain-containing protein [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100509|gb|ACZ19496.1| alanine racemase domain protein [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 235
Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 113/226 (50%), Gaps = 14/226 (6%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L + IE +A R V +VAV+K + +R A G I EN++QEA +K
Sbjct: 9 DNLAAAMEAIERAAGSVGRDPGEVRVVAVTKNHPPQAVRAAAQAGIRIVGENRVQEAMEK 68
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETV-SREKTASLLSLEMIKQSRFLPVY 123
L ++ DVQ IG LQ NKV + + F + TV S E +SL + M PV
Sbjct: 69 RREL-QDLDVQWIMIGHLQRNKVRKALETFHQVHTVDSLELASSLNRVLMETPDARCPVL 127
Query: 124 IQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
++VN E K G+ P+ + +IL R + +L + GL + P + + + F L
Sbjct: 128 MEVNISGEASKHGVSPDLAQPLGEMILSRCE-RLELRGLFGVGPLVDDQARIRASFASLR 186
Query: 179 ------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E A L +LSMGM+ D+ LA+ G+T VR+G+ +FG R
Sbjct: 187 RLRDQLEAALGIHLPELSMGMSSDYPLAVMEGSTMVRLGTCLFGPR 232
>gi|254304213|ref|ZP_04971571.1| possible TIM-barrel fold protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148324405|gb|EDK89655.1| possible TIM-barrel fold protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 223
Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 107/202 (52%), Gaps = 13/202 (6%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD--VQLRFIGSLQ 83
+ V LVAV+K + I L GQ+I ENK+Q K K I KE + ++ FIG+LQ
Sbjct: 22 EKVKLVAVTKYSSVEDIEKFLETGQIICGENKVQVIKDK-IEYFKEKNKKIKWHFIGNLQ 80
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NKV I+ D+I +V++ A + + + S+ + V +++N E K G ++ K
Sbjct: 81 KNKVKYIIDDVDLIHSVNKLSLAQEIDKKAEQSSKIMDVLLEINVYGEESKQGYSLDELK 140
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR----------ECKLTKLSMGM 193
+I + LN+ G+M + P + K + SE+ + LT+LSMGM
Sbjct: 141 CDIIELQNLKNLNIIGVMTMAPFTDDEKILRMVFSELRKIKDELNKEYFNNNLTELSMGM 200
Query: 194 TRDFELAIASGATSVRIGSGIF 215
+ D+++A+ G+T +R+G+ IF
Sbjct: 201 SNDYKIALQEGSTFIRVGTKIF 222
>gi|238787371|ref|ZP_04631170.1| alanine racemase [Yersinia frederiksenii ATCC 33641]
gi|238724633|gb|EEQ16274.1| alanine racemase [Yersinia frederiksenii ATCC 33641]
Length = 203
Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 95/202 (47%), Gaps = 11/202 (5%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK---WIPLRKEWDVQLRFIGSLQS 84
++L+AVSK I A++ GQ F EN +QE K + ++ FIG LQS
Sbjct: 1 MTLLAVSKTKPVTAIEEAIAAGQFAFGENYVQEGVDKIHYFADTPHATKLEWHFIGPLQS 60
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK + F TV R K A LS + L V IQVN E KSGI +
Sbjct: 61 NKSRLVAENFAWCHTVDRLKIAQRLSAQRPNNMPALNVLIQVNICDEQSKSGIALAELPA 120
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------REC--KLTKLSMGMTRD 196
Q L++ GLM IP + + + ++ + C ++ LSMGMT D
Sbjct: 121 LAASISQLPHLHLRGLMAIPAPETDYQRQLAVFEQMNQAFLTLKACYPQMDTLSMGMTDD 180
Query: 197 FELAIASGATSVRIGSGIFGER 218
AIA+G+T VRIG+ IFG R
Sbjct: 181 MAAAIAAGSTLVRIGTAIFGSR 202
>gi|326560147|gb|EGE10536.1| putative alanine racemase [Moraxella catarrhalis 103P14B1]
gi|326570756|gb|EGE20781.1| putative alanine racemase [Moraxella catarrhalis BC1]
gi|326573541|gb|EGE23504.1| putative alanine racemase [Moraxella catarrhalis 101P30B1]
Length = 236
Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 94/197 (47%), Gaps = 13/197 (6%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
L+AVSK I+ GQ F EN LQEA K I + + +IGS+Q NK +
Sbjct: 42 LIAVSKTKPVAMIQTLFHQGQQDFGENYLQEALGK-ISQLSQLPIIWHYIGSIQRNKTRD 100
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
I FD + T+ RE A L+ E + L V IQ+N E KSG P + +
Sbjct: 101 IAKHFDWVHTLEREIIAQRLN-EQRAGMQPLNVLIQINIDDESSKSGCKPTELPTLIEQI 159
Query: 150 RQKYQLNVEGLMCIP-----PAMGNPKPHFYLLSEIARECKL---TKLSMGMTRDFELAI 201
LN+ G+M IP A K L +AR L +SMGM+ D A+
Sbjct: 160 INYKNLNLRGVMVIPSQQTVDAFARTKE---LFDAMARRFDLPNWDTISMGMSGDMTQAV 216
Query: 202 ASGATSVRIGSGIFGER 218
A G+T VR+G+ IFGER
Sbjct: 217 AHGSTMVRVGTAIFGER 233
>gi|86740126|ref|YP_480526.1| hypothetical protein Francci3_1420 [Frankia sp. CcI3]
gi|86566988|gb|ABD10797.1| Protein of unknown function UPF0001 [Frankia sp. CcI3]
Length = 346
Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 107/235 (45%), Gaps = 41/235 (17%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK------------WIPLRKEWD 73
D ++L+AVSK + + + + G FAEN+ QEA K +P + D
Sbjct: 109 DHLTLIAVSKTYPPQDVVMMHTLGVRHFAENREQEAGPKVSLVTRLIGGERSVPAKGTGD 168
Query: 74 -----------VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
F+G LQ NK ++ D +++V R +LS +++ R L +
Sbjct: 169 GLSSGATGSDDPIWHFVGQLQRNKARSVLRWADWVQSVDRVSLVPVLSRLAMERGRPLSI 228
Query: 123 YIQVN----------TGYEI---QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
+QV+ G I ++ GI P L + L + G+M + P G
Sbjct: 229 CLQVSLDLPGASDGKIGASIAGSRRGGIDPAGLSALADLVEEAPGLALRGVMAVAPRRGQ 288
Query: 170 PKPHFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P+P F L E+A K+ T +S GM+ D E A+A GAT +RIG+ +FGERP
Sbjct: 289 PRPAFARLREVAERLKVGHPQATVISAGMSGDLEDAVAEGATHLRIGTALFGERP 343
>gi|297799306|ref|XP_002867537.1| AT4g26860/F10M23_200 [Arabidopsis lyrata subsp. lyrata]
gi|297313373|gb|EFH43796.1| AT4g26860/F10M23_200 [Arabidopsis lyrata subsp. lyrata]
Length = 244
Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 103/211 (48%), Gaps = 18/211 (8%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R + V ++AVSK IR G F EN +QE K L + D++ F+G L
Sbjct: 30 RDPERVRVLAVSKTKPVSLIRQIYDAGHRCFGENYVQEIIDKAPQLPE--DIEWHFVGHL 87
Query: 83 QSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQVNTGYEIQKSGIM 138
QSNK + V ++ V EK A+ L + R L V +QVNT E+ KSGI
Sbjct: 88 QSNKAKTLLTGVPNLAMVHGVDGEKVANHLDRAVSTLGRHPLKVLVQVNTSGEVSKSGIE 147
Query: 139 PNQTKDFVILCRQKY-QLNVEGLMCI--PPAMGNPKPHFYLLSEI-ARECKLT------- 187
P+ + +Q L GLM I P P+ +F LS A CK
Sbjct: 148 PSSVVELARHVKQHCPNLVFSGLMTIGMPDYTSTPE-NFRTLSNCRADVCKALGMAEDRF 206
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ DFELAI G+T+VR+GS IFG R
Sbjct: 207 ELSMGMSGDFELAIEMGSTNVRVGSTIFGPR 237
>gi|217032271|ref|ZP_03437768.1| hypothetical protein HPB128_142g19 [Helicobacter pylori B128]
gi|298735942|ref|YP_003728467.1| hypothetical protein HPB8_446 [Helicobacter pylori B8]
gi|216946037|gb|EEC24650.1| hypothetical protein HPB128_142g19 [Helicobacter pylori B128]
gi|298355131|emb|CBI66003.1| conserved hypothetical protein [Helicobacter pylori B8]
Length = 222
Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 109/210 (51%), Gaps = 35/210 (16%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---EWDVQLRFIGSLQS 84
V +VAVSK + I+ +C Q F EN++Q+ K K L EW IGSLQ
Sbjct: 28 VKIVAVSKNASLEAIQHYYNCSQRAFGENRVQDLKIKMHSLEHLPLEW----HMIGSLQE 83
Query: 85 NKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV----YIQVNTGYEIQKSGIMP 139
NK++ ++SL ++ ++ K L+L++ K+ L V +QVN+ YE KSG+MP
Sbjct: 84 NKINALLSLKPALLHSLDSLK----LALKIEKRCEILGVNLNALLQVNSAYEESKSGVMP 139
Query: 140 NQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK---------- 188
+T + + + +L ++GLMCI + K EI + TK
Sbjct: 140 EETLEIYSQISETCKRLKLKGLMCIGAHADDEK-------EIEKSFITTKKLFDRLKNAS 192
Query: 189 -LSMGMTRDFELAIASGATSVRIGSGIFGE 217
LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 193 VLSMGMSCDFELAIACGANLLRIGSFLFKE 222
>gi|317180141|dbj|BAJ57927.1| hypothetical protein HPF32_0345 [Helicobacter pylori F32]
Length = 222
Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 114/218 (52%), Gaps = 22/218 (10%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-- 70
KIE + I R V +VAVSK + I+ +C Q F EN++Q+ K K L
Sbjct: 14 KIEKARIAYSRHH-IVKIVAVSKNASLEAIQNYYNCSQRAFGENRVQDLKIKMHSLEHLP 72
Query: 71 -EWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV----YI 124
EW IGSLQ NK++ ++SL ++ ++ K L+L++ K+ L V +
Sbjct: 73 LEW----HMIGSLQENKINALLSLKPALLHSLDSLK----LALKIEKRCEMLGVNLNALL 124
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQ-LNVEGLMCIPPAMGNPKP---HFYLLSEI 180
QVN+ YE KSG+MP +T + + + L ++GLMCI + K F ++
Sbjct: 125 QVNSAYEESKSGVMPEETLEIYSQISETCKCLKLKGLMCIGAHADDEKKIEKSFITTKKL 184
Query: 181 ARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 185 FDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|329769175|ref|ZP_08260595.1| YggS family pyridoxal phosphate enzyme [Gemella sanguinis M325]
gi|328839394|gb|EGF88972.1| YggS family pyridoxal phosphate enzyme [Gemella sanguinis M325]
Length = 225
Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 23/230 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ- 59
M + K++I + R + + ++AV+K V ++ A+ G FAEN+ Q
Sbjct: 1 MDIRENFDNIKREISEACGKVDRSPEDIKVIAVTKYVTDARVEQAIEVGVDAFAENRPQN 60
Query: 60 --EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K+K+ KEW IGSLQ+ KV ++++ D + RE A +E +
Sbjct: 61 YLERKQKYSD--KEW----HLIGSLQTRKVRDVINHVDYFHALDRESLAK--EIEKRAED 112
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
R + ++QVN E K G+ ++T +F+ + ++NV GLM + P + + + F
Sbjct: 113 R-VNCFVQVNVSGEESKHGLTSHETIEFIKGLGKYSKINVIGLMTMAPFVEDEDVLRNCF 171
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L ++ E K LSMGM+ D+++AI GAT VRIG+ + G
Sbjct: 172 KKLRQLRDEVKELNLDYAPCEYLSMGMSNDYKIAIEEGATHVRIGTSLVG 221
>gi|258654347|ref|YP_003203503.1| alanine racemase domain-containing protein [Nakamurella
multipartita DSM 44233]
gi|258557572|gb|ACV80514.1| alanine racemase domain protein [Nakamurella multipartita DSM
44233]
Length = 249
Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 100/208 (48%), Gaps = 17/208 (8%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V ++ +K + + I AL+ G + EN++QE K L + + FIG LQSNKV
Sbjct: 45 VRILLATKTMPPEVIAQALAAGATLIGENRVQEVLAKADAL-AGFPHTMHFIGHLQSNKV 103
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
++++ ++T+ L + +R L V+IQVN E KSGI P ++ V
Sbjct: 104 NQLLPHIQCLQTLDSVDLIGRLQSRLESAARNLDVFIQVNVSGEQTKSGIAPADAREMVE 163
Query: 148 LCRQKYQLNVEGLMCIPPAMGNP-----KPHFYLLSEIAREC---------KLTKLSMGM 193
+L + G M I + +P + + L+ I +LSMGM
Sbjct: 164 AVAAAPRLRLRGFMTI--GLNSPDRDAIRRGYRALATIRDRAADEQWPGAQDAVELSMGM 221
Query: 194 TRDFELAIASGATSVRIGSGIFGERPCQ 221
+ DF AIA GAT VR+GS +FG RP +
Sbjct: 222 SGDFADAIAEGATIVRLGSAVFGPRPAR 249
>gi|212639643|ref|YP_002316163.1| putative enzyme with a TIM-barrel fold [Anoxybacillus flavithermus
WK1]
gi|212561123|gb|ACJ34178.1| Predicted enzyme with a TIM-barrel fold [Anoxybacillus flavithermus
WK1]
Length = 233
Score = 92.4 bits (228), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 20/230 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +LQ +Q I ++ R V +VAV+K V + + A+ G V E++
Sbjct: 7 MSVKQRLQTIQQHIADACEKTGRNASDVQIVAVTKYVSIARAKEAIDAGIVHLGESRTDG 66
Query: 61 AKKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K+ + KE W FIG+LQS KV +I+ D + ++ R A ++ + +R
Sbjct: 67 FLQKYETIGKEATW----HFIGTLQSRKVKQIIDYVDYVHSLDRLSLAEEINK---RANR 119
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+ ++QVN E K G+ P F+ ++ V GLM + P + + F
Sbjct: 120 MIKCFVQVNVSGEQSKHGLAPKDVLPFIETLSAFSRIEVVGLMTMAPYTDDEATIRRCFR 179
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
L E+ + + T+LSMGM+ D+ +A+ GAT +R+G+ + GE
Sbjct: 180 TLRELKEQVQEKQLPHAPCTQLSMGMSNDYVIAVEEGATFLRLGTCLVGE 229
>gi|320161247|ref|YP_004174471.1| hypothetical protein ANT_18450 [Anaerolinea thermophila UNI-1]
gi|319995100|dbj|BAJ63871.1| hypothetical protein ANT_18450 [Anaerolinea thermophila UNI-1]
Length = 244
Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 115/228 (50%), Gaps = 16/228 (7%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
++++ SA R ++ ++ V+K + ++ ++ G +F EN +EA K + L+
Sbjct: 16 EEQVAQSAFEVGRDPKAIRILVVTKTQPLEVVKASIEAGITLFGENYPEEALPKILALQS 75
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
+ ++ IG LQS K +V F V+ET+ R + A L+ +R LP +++N
Sbjct: 76 QPGIEWHMIGHLQSRKARIVVEHFSVMETIDRVEIAEKLNRFAQGANRVLPAMLELNVSG 135
Query: 131 EIQKSGI--MPNQTKDFVILCRQKY----QLNVEGLMCIPP---AMGNPKPHFYLLSEIA 181
E K G+ +QT ++ +K L+++GLM +PP M +P+F L +I
Sbjct: 136 EESKFGLPAWDDQTFTSMLGAIEKVVSLPNLSIKGLMTMPPLFEKMEESRPYFVKLRKIQ 195
Query: 182 RECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ +LSMG + DF +A+ GAT +RIG+ I G R +T
Sbjct: 196 DSLRKIFPQVCWDELSMGTSADFPVAVQEGATIIRIGTAILGPRRQKT 243
>gi|317480381|ref|ZP_07939481.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. 4_1_36]
gi|316903459|gb|EFV25313.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. 4_1_36]
Length = 221
Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 107/214 (50%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+L++ P + V LVAVSK ++ I A GQ +F E+K+QE K L K D++ F
Sbjct: 9 VLSELP-EKVRLVAVSKFHPNEAIEEAYRAGQRVFGESKVQEMTAKCESLPK--DIEWHF 65
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK+ IV +I + K + + + K + + +Q++ E K G
Sbjct: 66 IGHLQTNKIKYIVPYVALIHGIDSYKLLAEVDKQAAKAGKTVNCLLQLHIAREETKFGFS 125
Query: 139 PNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-------- 185
++ ++ + R+ + + GLM + N K F LS E K
Sbjct: 126 FDECREMLAAGEWRELKHIRICGLMGMATNTDNDEQIKTEFCSLSSFFNEVKAKWFADAE 185
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AIA+G+T +R+GS IFGER
Sbjct: 186 SFRELSMGMSHDYHEAIAAGSTLIRVGSKIFGER 219
>gi|154685954|ref|YP_001421115.1| YlmE [Bacillus amyloliquefaciens FZB42]
gi|154351805|gb|ABS73884.1| YlmE [Bacillus amyloliquefaciens FZB42]
Length = 230
Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 117/235 (49%), Gaps = 26/235 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++L+ ++I + + R + V+++AV+K V +++ + A+ G EN+ E
Sbjct: 1 MRVADQLRHINERINEACNRSGRSPEDVTVIAVTKYVSAERAQEAVDAGITSLGENRDAE 60
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K++ I EW FIGSLQS KV +V I ++ R L+ E+ K+++
Sbjct: 61 LIHKQEVIKGSPEW----HFIGSLQSRKVKAVVDRVSYIHSLDRLS----LAKEIEKRAQ 112
Query: 119 F-LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP------- 170
+ ++QVNT E K G+ + F+ + ++VEGLM + P +
Sbjct: 113 HAVRCFVQVNTSLEPSKHGLKTEEVIPFIRELSEFRNISVEGLMTMAPLTDDTETIRACF 172
Query: 171 ------KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ L++ C+ +LSMGM+ D+E+A+ GAT +RIGS + G P
Sbjct: 173 RQLRDLRDQVQKLNQTNAPCR--ELSMGMSNDYEIAVEEGATFIRIGSSLVGNEP 225
>gi|4103144|gb|AAD01685.1| hypothetical protein [Helicobacter pylori NCTC 11637]
Length = 222
Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 111/231 (48%), Gaps = 34/231 (14%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
K+ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K K
Sbjct: 7 KIDALITKIEKARIAYSR-HHIVKIVAVSKNASLEAIQHYYNCSQRAFGENKVQDLKTKM 65
Query: 66 IPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
L EW IGSLQ NK++ ++SL + +L ++ K+ L V
Sbjct: 66 HSLEHLPLEW----HMIGSLQENKINALLSLKPALLDSLDSLKLAL---KIEKRCEILGV 118
Query: 123 ----YIQVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
+QVN+ YE KSG+MP T + + + +L ++GLMCI + K
Sbjct: 119 NLNALLQVNSAYEESKSGVMPEGTLEIYSQISETCKRLKLKGLMCIGAHADDEK------ 172
Query: 178 SEIARECKLTK-----------LSMGMTRDFELAIASGATSVRIGSGIFGE 217
EI + TK LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 173 -EIEKSFITTKKLFDRLKNASVLSMGMSCDFELAIACGANLLRIGSFLFKE 222
>gi|224080861|ref|XP_002193974.1| PREDICTED: similar to proline synthetase co-transcribed homolog
(bacterial) [Taeniopygia guttata]
Length = 276
Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 125/242 (51%), Gaps = 28/242 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
LG L+ ++++ +A A+RP+ LVAVSK + + A GQ F EN
Sbjct: 11 GLGPALRAVTEQVQQAA--ARRPQGLPAVQPRLVAVSKTKPVEMVMEAYGHGQRSFGENY 68
Query: 58 LQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLE 112
+QE +K R D++ FIG LQ N V++++++ ++ +ETV K A ++
Sbjct: 69 VQELLEKASDSRILSSCPDIKWHFIGHLQKNNVNKLIAVPNLFMLETVDSVKLADRVNSS 128
Query: 113 MIKQ--SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAMGN 169
K+ S+ L V +QVNT E K G+ P T V K L GLM I ++G+
Sbjct: 129 WQKKGSSQKLKVMVQVNTSGEDSKHGLPPGDTAAAVEHVINKCPSLEFVGLMTIG-SIGH 187
Query: 170 -----PKPHFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRIGSGIFG 216
P P F +L + +E KL +LSMGM+ DF+ AI G+T+VRIGS IFG
Sbjct: 188 DLSKGPNPDFQVLLSVRQEVCEKLNLPLDKVELSMGMSTDFQHAIEVGSTNVRIGSTIFG 247
Query: 217 ER 218
ER
Sbjct: 248 ER 249
>gi|224117946|ref|XP_002331519.1| predicted protein [Populus trichocarpa]
gi|222873743|gb|EEF10874.1| predicted protein [Populus trichocarpa]
Length = 238
Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 108/221 (48%), Gaps = 16/221 (7%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
Q++ +A A R + +VAVSK I+ G F EN QE +K L +
Sbjct: 14 QRVSQAAEKAGRGSQQIRVVAVSKTKPVSLIKQVYDVGHRCFGENYAQEFIEKAPQLPE- 72
Query: 72 WDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQVN 127
D++ FIG+LQSNKV + V D++E+V EK A+ L + R L V +QVN
Sbjct: 73 -DIEWHFIGNLQSNKVKPLLASVPNLDMVESVDDEKIANHLDRAVGNLGRKPLKVLVQVN 131
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAMGNPKP-HFYLLSEIARE-C 184
T E KSG+ P+ + Q L GLM I P +F L+ E C
Sbjct: 132 TSGEESKSGVEPSGCVELAKHVIQSCTNLQFCGLMTIGMLDYTSTPENFKALANCRSEVC 191
Query: 185 KL-------TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K +LSMGM+ DFE AI G+T+VRIGS IFG R
Sbjct: 192 KALGIPEEQCELSMGMSNDFEQAIEMGSTNVRIGSTIFGPR 232
>gi|34558498|ref|NP_908313.1| hypothetical protein WS2225 [Wolinella succinogenes DSM 1740]
gi|34481792|emb|CAE11213.1| conserved hypothetical protein [Wolinella succinogenes]
Length = 223
Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 119/235 (50%), Gaps = 34/235 (14%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L L ++IE + I R V +VAVSK S I+ CGQ F EN++Q+
Sbjct: 1 MNLAQNLDQAIKRIEQARIAYSR-HHIVKIVAVSKYSSSDAIQTLYECGQRAFGENRVQD 59
Query: 61 AKKKW-----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
+K +PL EW FIG+LQSNK++ ++SL + SL SLE+ K
Sbjct: 60 LAQKSELLGDLPL--EW----HFIGTLQSNKINALLSLKPAL-------MHSLHSLELAK 106
Query: 116 Q--------SRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPA 166
+ ++ LP +Q+N+ E KSG+ P + + + + + Q+ ++G+M I
Sbjct: 107 ELHKRLESRNQTLPALLQINSAKEESKSGVEPQKAVETYHKILEEFPQIKLQGVMTIGAH 166
Query: 167 MGNP---KPHFYLLSEIARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + F I + K LSMGM+ DFELAIA G+ VR+GS +F
Sbjct: 167 VEDRAIIQKSFETTQVIFEQLKPHGAEILSMGMSGDFELAIACGSNLVRLGSTLF 221
>gi|15645023|ref|NP_207193.1| hypothetical protein HP0395 [Helicobacter pylori 26695]
gi|3183222|sp|O25156|Y395_HELPY RecName: Full=UPF0001 protein HP_0395
gi|2313495|gb|AAD07459.1| conserved hypothetical protein [Helicobacter pylori 26695]
Length = 222
Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 108/203 (53%), Gaps = 21/203 (10%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---EWDVQLRFIGSLQS 84
V +VAVSK + I+ +C Q F ENK+Q+ K K L EW IGSLQ
Sbjct: 28 VKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKTKMHSLEHLPLEW----HMIGSLQE 83
Query: 85 NKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV----YIQVNTGYEIQKSGIMP 139
NK++ ++SL ++ ++ K L+L++ K+ L V +QVN+ YE KSG++P
Sbjct: 84 NKINALLSLKPALLHSLDSLK----LALKIEKRCEILGVNLNALLQVNSAYEESKSGVVP 139
Query: 140 NQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECK-LTKLSMGMT 194
+ + + + L ++GLMCI + K F ++ + K + LSMGM+
Sbjct: 140 EEALEIYSQISETCKHLKLKGLMCIGAHTDDEKEIEKSFITTKKLFDQIKNASVLSMGMS 199
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
DFELAIA GA +RIGS +F E
Sbjct: 200 DDFELAIACGANLLRIGSFLFKE 222
>gi|150007199|ref|YP_001301942.1| hypothetical protein BDI_0544 [Parabacteroides distasonis ATCC
8503]
gi|256840575|ref|ZP_05546083.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|149935623|gb|ABR42320.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
gi|256737847|gb|EEU51173.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 222
Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 109/210 (51%), Gaps = 26/210 (12%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSN 85
V+LVAVSK + + A + GQ +F E++ QE AK+K +P EW FIG LQSN
Sbjct: 18 VTLVAVSKFHPVEALWEAYNAGQRVFGESRAQELSAKQKVLPEDIEW----HFIGPLQSN 73
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV +I +I ++ K + ++ + K +R + V ++++ E K G+ P + K+
Sbjct: 74 KVKDIAPFIHLIHSIDSLKLLAEVNKQAKKHNRTIRVLLEIHVAQEESKHGLSPEECKE- 132
Query: 146 VILCRQK-----YQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLT---------K 188
L R + + + GLM + + + F + ++ E K T +
Sbjct: 133 --LLRDESLAEFQHIRICGLMGMATNTDDTGLIREEFRKIHDLFIELKETLCKDNVDFKE 190
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+SMGM+ D+ +AI G+T +R+G+ IFGER
Sbjct: 191 ISMGMSHDYPIAIQEGSTLIRVGTSIFGER 220
>gi|121714355|ref|XP_001274788.1| alanine racemase family protein, putative [Aspergillus clavatus
NRRL 1]
gi|119402942|gb|EAW13362.1| alanine racemase family protein, putative [Aspergillus clavatus
NRRL 1]
Length = 266
Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 115/254 (45%), Gaps = 41/254 (16%)
Query: 2 SLGNKLQVFKQKIENSAILAKR-PKDSVSLVAVSKMVDSKKIRVALS---CGQVIFAENK 57
+L + L +I +A A R P V LVAVSK+ + I +AL F EN
Sbjct: 10 TLLSNLSSVTSRITTAASTAHRAPTHPVRLVAVSKLKTAADI-LALHNPPTNHSHFGENY 68
Query: 58 LQE--AKKKWIPLRKEWDVQLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLLS-- 110
LQE K K +P W FIG LQSNK ++ V +E+V EK ASLL
Sbjct: 69 LQELTEKSKLLPPTIRW----HFIGGLQSNKCVALARDVRGLWAVESVDSEKKASLLDKG 124
Query: 111 -------LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMC 162
+ L V++QVNT E K+G+ P R+K +L ++G+M
Sbjct: 125 WGERAAEVRATDADDRLRVFVQVNTSGEENKAGVEPAAAVALARFVREKCPRLRLQGVMT 184
Query: 163 I-------PPAMGNPKPHFYLLSE----IARECKLT------KLSMGMTRDFELAIASGA 205
I N F L E I RE L +LSMGM+ DFE AIA G+
Sbjct: 185 IGAIARSKATTPENENEDFVCLRETRDRIVRELGLQGPEAELELSMGMSEDFEGAIALGS 244
Query: 206 TSVRIGSGIFGERP 219
VR+G+ IFG RP
Sbjct: 245 DQVRVGTTIFGHRP 258
>gi|148653680|ref|YP_001280773.1| alanine racemase domain-containing protein [Psychrobacter sp.
PRwf-1]
gi|148572764|gb|ABQ94823.1| alanine racemase domain protein [Psychrobacter sp. PRwf-1]
Length = 238
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 97/211 (45%), Gaps = 22/211 (10%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK------EWDVQ------ 75
V+L+AVSK + I GQ F EN LQEA K + K + DV
Sbjct: 29 VTLLAVSKTKPADMIVTLAQAGQKHFGENYLQEAVDKQHQVAKLLTKSEDGDVSSAPPIV 88
Query: 76 LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKS 135
+IG +Q NK +I FD + T+ R+ A L + L V IQVN +E KS
Sbjct: 89 WHYIGHIQRNKTKDIAEAFDWVHTIERDIIAKRLDAQRPSHLPKLNVLIQVNIDHEESKS 148
Query: 136 GIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--------LT 187
G +P++ + + + L + GLM IP G F ++ ++ K
Sbjct: 149 GCLPDELEALIASIKGYGNLCLRGLMIIPSKEGIDA--FERTKQLFKQIKQAHPDLPNWD 206
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D AI G+T VR+GS IFG R
Sbjct: 207 TLSMGMSADMADAIEQGSTMVRVGSAIFGAR 237
>gi|317177809|dbj|BAJ55598.1| hypothetical protein HPF16_1001 [Helicobacter pylori F16]
Length = 222
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 113/225 (50%), Gaps = 36/225 (16%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-- 70
KIE + I R V +VAVSK + I+ +C Q F EN++Q+ K K L
Sbjct: 14 KIEKARIAYSRHH-IVKIVAVSKNASLEAIQHYYNCSQRAFGENRVQDLKIKMRSLEHLP 72
Query: 71 -EWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV----YI 124
EW IGSLQ NK++ ++SL ++ ++ K L+L++ K+ L V +
Sbjct: 73 LEW----HMIGSLQENKINALLSLKPALLHSLDSLK----LALKIEKRCEILGVNLNALL 124
Query: 125 QVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
QVN+ YE KSG+MP + + + + L ++GLMCI + K EI +
Sbjct: 125 QVNSAYEESKSGVMPEEMLEIYSQISETCKHLKLKGLMCIGAHADDEK-------EIEKS 177
Query: 184 CKLTK-----------LSMGMTRDFELAIASGATSVRIGSGIFGE 217
TK LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 178 FITTKKLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|313886741|ref|ZP_07820448.1| pyridoxal phosphate enzyme, YggS family [Porphyromonas
asaccharolytica PR426713P-I]
gi|312923782|gb|EFR34584.1| pyridoxal phosphate enzyme, YggS family [Porphyromonas
asaccharolytica PR426713P-I]
Length = 221
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 108/211 (51%), Gaps = 24/211 (11%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ V LVAVSK + +R A GQ +F EN+ QE +K P E D+Q FIG+LQ N
Sbjct: 15 EQVQLVAVSKFHPVESVREAYEAGQRLFGENRAQELAEK-APQLPE-DIQWHFIGTLQRN 72
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQS----RFLPVYIQVNTGYEIQKSGIMPNQ 141
KV IV +IE+V E +LL E++KQ+ R L + +Q E KSG+ +
Sbjct: 73 KVKYIVPYVSLIESVDSE---ALLQ-EIVKQANRFDRQLRILLQYKIAQEESKSGLDHAE 128
Query: 142 ----TKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-------LT 187
++ + ++ V GLM + + + F L + E +
Sbjct: 129 LLALVDHYLATPEWRERITVCGLMGMATLTADKEQIRHEFDTLRALQTELRERYPQISWN 188
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ +A+ +G+T VRIG+ IFGER
Sbjct: 189 ELSMGMSSDWPIAVETGSTIVRIGTAIFGER 219
>gi|297161291|gb|ADI11003.1| hypothetical protein SBI_07883 [Streptomyces bingchenggensis BCW-1]
Length = 203
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 99/205 (48%), Gaps = 24/205 (11%)
Query: 33 VSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW-----IPLRKEWDVQLRFIGSLQSNKV 87
V+K + +R+ G AEN+ Q+A K +PL W F+G LQ+NKV
Sbjct: 2 VTKTYPASDVRLLAELGVHHVAENRDQDAAPKAAECADLPLI--W----HFVGQLQTNKV 55
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV----NTGYEIQKSGIMPNQTK 143
+ S D++++V R++ LS + R L IQV +G + ++ G+ P+ +
Sbjct: 56 RSVASYADMVQSVDRKRLVDALSRAAVGAGRELGCLIQVALDAESGQQGERGGVAPDGVE 115
Query: 144 DFVILCRQKYQLNVEGLMCIP----PAMGNPKPHFYLLSEIARECKLTK-----LSMGMT 194
+ L ++GLM + P G P+ F L EI+ + +S GM+
Sbjct: 116 ALCDAVVEAQGLRLDGLMTVAPLAGPYAGQPRAAFDRLMEISSSLRAAHPAANMVSAGMS 175
Query: 195 RDFELAIASGATSVRIGSGIFGERP 219
D E A+A+GAT VR+G+ + G RP
Sbjct: 176 SDLEDAVAAGATHVRVGTAVLGVRP 200
>gi|159463278|ref|XP_001689869.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283857|gb|EDP09607.1| predicted protein [Chlamydomonas reinhardtii]
Length = 251
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 105/212 (49%), Gaps = 25/212 (11%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-----AKKKWIPLRKEWDVQLRFIGSL 82
V LVAVSK ++ ++ A GQ +F EN +Q K +P DVQ FIG L
Sbjct: 30 VRLVAVSKTKPAEALQEAYDAGQRVFGENYVQARCEMLDKAPALP----GDVQWHFIGHL 85
Query: 83 QSNKVS---EIVSLFDVIETVSREKTASLL--SLEMIK-QSRFLPVYIQVNTGYEIQKSG 136
QSNKV E V ++ETV K A L +LE + ++ L V +QVNT E K G
Sbjct: 86 QSNKVKAVLEGVPNLAMVETVDSAKLADKLNKTLETVSGRTAPLAVMVQVNTSGEESKYG 145
Query: 137 IMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKL------ 189
+ P + Q +L + GLM I + +P ++ R+ T+L
Sbjct: 146 VEPTECVSLAKHIAQNCPKLRLAGLMTIGMPDYSSRPECFICLSGCRDAVATELGLRPEQ 205
Query: 190 ---SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMGM+ DFE AI G+T++R+GS IFG R
Sbjct: 206 LELSMGMSGDFEQAIEMGSTNIRVGSTIFGAR 237
>gi|313816052|gb|EFS53766.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL059PA1]
gi|315098477|gb|EFT70453.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL059PA2]
Length = 198
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 91/195 (46%), Gaps = 21/195 (10%)
Query: 45 ALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGSLQSNKVSEIVSLFDVIET 99
A G +F ENK+Q+A K + EW + IG LQ+NKV + +
Sbjct: 5 AYRAGYRLFGENKVQDALAKSELMDANHPGLEWSI----IGGLQTNKVKYVARFATEFQA 60
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ K A L + K+ R L V +QVN+ E QKSGI P + DF L+V G
Sbjct: 61 LDSLKIAHELDKRLQKEGRQLRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRG 120
Query: 160 LMCIPPAMGNPKP-----------HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSV 208
LM + + + L E ++LSMGM+ D E+AIA G+T V
Sbjct: 121 LMTVALNSSDQRAVADCFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQV 180
Query: 209 RIGSGIFGER-PCQT 222
RIG+ IFG R P +T
Sbjct: 181 RIGTDIFGARDPART 195
>gi|301311136|ref|ZP_07217064.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 20_3]
gi|300830710|gb|EFK61352.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 20_3]
Length = 222
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 108/210 (51%), Gaps = 26/210 (12%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSN 85
V+LVAVSK + + A + GQ +F E++ QE AK+K +P EW FIG LQSN
Sbjct: 18 VTLVAVSKFHPVEALWEAYNAGQRVFGESRAQELSAKQKVLPEDIEW----HFIGPLQSN 73
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV +I +I ++ K + ++ + K R + V ++++ E K G+ P + K+
Sbjct: 74 KVKDIAPFIHLIHSIDSLKLLAEVNKQAKKHDRTIRVLLEIHVAQEESKHGLSPEECKE- 132
Query: 146 VILCRQK-----YQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLT---------K 188
L R + + + GLM + + + F + ++ E K T +
Sbjct: 133 --LLRDESLAEFQHIRICGLMGMATNTDDTGLIREEFRKIHDLFIELKETLCKDNVDFKE 190
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+SMGM+ D+ +AI G+T +R+G+ IFGER
Sbjct: 191 ISMGMSHDYPIAIQEGSTLIRVGTSIFGER 220
>gi|294502896|ref|YP_003566958.1| hypothetical protein YPZ3_0786 [Yersinia pestis Z176003]
gi|262360931|gb|ACY57652.1| hypothetical protein YPD4_0743 [Yersinia pestis D106004]
gi|262364871|gb|ACY61428.1| hypothetical protein YPD8_0738 [Yersinia pestis D182038]
gi|294353355|gb|ADE63696.1| hypothetical protein YPZ3_0786 [Yersinia pestis Z176003]
Length = 202
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 93/197 (47%), Gaps = 8/197 (4%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
++AVSK I A++ GQ F EN +QE K ++ FIG LQSNK
Sbjct: 1 MLAVSKTKPVAAIEKAIAAGQYAFGENYVQEGVDKIHSFVDNKTLEWHFIGPLQSNKSRL 60
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
+ F TV R K A LS + L V IQ+N E K+GI ++
Sbjct: 61 VAENFAWCHTVDRLKIAQRLSAQRPAAMPALNVLIQINISDEQSKAGISLSELPALADSI 120
Query: 150 RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSMGMTRDFELAI 201
L + GLM IP + + + +++ AR ++ LSMGMT D + AI
Sbjct: 121 STLPNLCLRGLMAIPAPEHDYQRQLAVFTQMNQAFLTLKARYPQIDTLSMGMTDDMDAAI 180
Query: 202 ASGATSVRIGSGIFGER 218
++G+T VRIG+ IFG R
Sbjct: 181 SAGSTLVRIGTAIFGAR 197
>gi|308161351|gb|EFO63803.1| PLP dependent protein [Giardia lamblia P15]
Length = 220
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 103/197 (52%), Gaps = 8/197 (4%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-EWDVQLRFIGSLQSNKVS 88
LVAVSK + I A + GQ +F EN +QE KK ++ D++ FIG LQ+NK
Sbjct: 20 LVAVSKTKPVEAILEAYAAGQRLFGENYVQELVKKTRAVQNVANDIEWHFIGHLQTNKAR 79
Query: 89 EIVSLFD-VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
+I S+ + V++TV +K A LS L V IQ+NT E+ KSG + +
Sbjct: 80 DIASIPNCVVQTVDSDKLARRLSDLRPGDLDPLRVMIQINTSGELTKSGCTVDGAIELAQ 139
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTK---LSMGMTRDFELAI 201
+ +L + GLM I + L+ I + KL + LSMGM+ D++LA+
Sbjct: 140 VIGVLPRLRLIGLMTIGAPNSSADSFQALIDARNVIEKAIKLEEKLELSMGMSSDYQLAV 199
Query: 202 ASGATSVRIGSGIFGER 218
GA VR+GS IFGER
Sbjct: 200 RMGADYVRVGSAIFGER 216
>gi|224535468|ref|ZP_03676007.1| hypothetical protein BACCELL_00331 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522934|gb|EEF92039.1| hypothetical protein BACCELL_00331 [Bacteroides cellulosilyticus
DSM 14838]
Length = 222
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 108/214 (50%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+L++ P D V LVAVSK ++ I A GQ IF E+K+QE K+ L K D++ F
Sbjct: 10 VLSELP-DGVRLVAVSKFHPNEAIEEAYRTGQRIFGESKVQEMTAKYESLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK+ IV +I + K ++ + K + + +Q++ E K G
Sbjct: 67 IGHLQTNKIKFIVPYVALIHGIDSYKLLVEVNKQAAKAGKVVNCLLQLHIAEEETKFGFS 126
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPK---PHFYLLSEIARECK-------- 185
+ ++ + K N++ GLM + + + F LS +E K
Sbjct: 127 FGECREMLAAGEWKTLSNIQLCGLMGMATNTDDNEQIEKEFCSLSSFFKEVKDSWFADTE 186
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AIA+G+T +R+GS IFG+R
Sbjct: 187 AFRELSMGMSHDYHQAIAAGSTLIRVGSKIFGDR 220
>gi|313112741|ref|ZP_07798389.1| pyridoxal phosphate enzyme, YggS family [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310624940|gb|EFQ08247.1| pyridoxal phosphate enzyme, YggS family [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 240
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 24/226 (10%)
Query: 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69
++K+ +A A R +V L A K ++ + + + +F EN +QE L
Sbjct: 16 IREKMAAAAREAGRDPAAVQLCAACKTRTAQTVAASAALPIDVFGENHVQE-------LC 68
Query: 70 KEWDVQL------RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
+D FIG LQ+NK+ +++ +I++V E + + E K V
Sbjct: 69 ANFDAGAYCGKPSHFIGHLQTNKIKKVLGRASLIQSVDSEHLLNAIEKEAAKAGIVQNVL 128
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR- 182
++VN G E K+G+ P + + + V+GLM IPP + + L+E+ +
Sbjct: 129 LEVNIGGEESKTGVAPEALWPLLDAAAAQEHIRVKGLMAIPPVNDDDARNRRYLAEVYKL 188
Query: 183 ----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ DFE AI GAT VRIG+ I+GER
Sbjct: 189 FVQAGERGYSNVSMETLSMGMSGDFENAIREGATLVRIGTAIYGER 234
>gi|113478239|ref|YP_724300.1| hypothetical protein Tery_4903 [Trichodesmium erythraeum IMS101]
gi|110169287|gb|ABG53827.1| Protein of unknown function UPF0001 [Trichodesmium erythraeum
IMS101]
Length = 226
Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 104/207 (50%), Gaps = 14/207 (6%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
PK SV L+AV+K V IR A + G F ENK+QEA+ K L+ D+ IG LQ
Sbjct: 17 PK-SVRLIAVTKQVSVDTIRTAYAAGIRDFGENKVQEAEAKQAQLQDLPDITWHLIGHLQ 75
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP-VYIQVNTGYEIQKSGIMPNQT 142
SNKV + + F I +V K A L+ + +Q + P + +QV + K G +
Sbjct: 76 SNKVVKALKQFQWIHSVDNLKLAKRLN-ALAEQFCYSPNICLQVKILPDPNKYGWTITEL 134
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIARE--------CKLTKLSM 191
+ Q L ++GLM IPP + F E+A E K +LSM
Sbjct: 135 MSDLEELNQCQHLKIKGLMTIPPQGLDDLQTLSVFQKTKELALEIREKNFSHLKTQELSM 194
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D+ LAI++G T VR+G +FGER
Sbjct: 195 GMSEDYNLAISAGTTIVRLGRILFGER 221
>gi|317157756|ref|XP_003190876.1| alanine racemase family protein [Aspergillus oryzae RIB40]
Length = 282
Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 86/232 (37%), Positives = 112/232 (48%), Gaps = 49/232 (21%)
Query: 28 VSLVAVSKMVDSKKIRVALS---CGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSL 82
+ L+AVSK+ + + +AL + F EN LQE K K +P +W FIG L
Sbjct: 52 IRLIAVSKLKPAADV-LALHQPPASHLHFGENYLQELQEKSKLLPPTIKW----HFIGGL 106
Query: 83 QSNK---VSEIVSLFDVIETVSREKTASLLS---------LEMIKQSRFLPVYIQVNTGY 130
QSNK ++ V +E+V EK ASLL L Q L V++QVNT
Sbjct: 107 QSNKCVTLARDVRGLWAVESVDSEKKASLLDKGWGERSEELRATDQESQLRVFVQVNTSG 166
Query: 131 EIQKSGIMPNQTKDFVILCR----QKYQLNVEGLMCI---------PPAMGNPKPHFYLL 177
E KSG+ P V LCR + +L ++G+M I P N F L
Sbjct: 167 EENKSGVDP--VSGAVSLCRFIREKCPRLKLQGVMTIGAIARSKATTPETENED--FVCL 222
Query: 178 SE----IARECKLT------KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E I RE KL +LSMGM+ DFE AIA G+ VR+G+ IFGERP
Sbjct: 223 RETRDRIVRELKLEGEDARLELSMGMSEDFEGAIALGSDEVRVGTTIFGERP 274
>gi|170072194|ref|XP_001870118.1| proline synthetase associated protein [Culex quinquefasciatus]
gi|167868284|gb|EDS31667.1| proline synthetase associated protein [Culex quinquefasciatus]
Length = 253
Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 107/217 (49%), Gaps = 24/217 (11%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNK 86
LVAVSK I S GQ F EN +QE +K L D+Q FIG LQSNK
Sbjct: 35 LVAVSKTKPVDLILDGYSIGQRDFGENYVQELIEKAHDAKILEHCKDIQWHFIGHLQSNK 94
Query: 87 VSEIVSLFDV--IETVSREKTASLL--SLEMIK----QSRFLPVYIQVNTGYEIQKSGIM 138
+++IV+L ++ IETV K A L + E +K S L V IQ+NT E +K+G
Sbjct: 95 INKIVNLPNLYMIETVHNAKLAENLNKAWEKVKADKPDSSKLNVLIQINTSGEDEKNGTN 154
Query: 139 PNQTKDFVILCRQKY-QLNVEGLMCI----PPAMGNPKPHFYLL--------SEIARECK 185
P + + +K LN G+M I P P F L S ++ +
Sbjct: 155 PAEAVNLYRFVTEKCPNLNCHGVMTIGRFGHDYSTGPNPDFIELMKCHADICSTFEKDPE 214
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++SMGM+ DF AI G+T VR+GS IFG R +T
Sbjct: 215 EVQVSMGMSDDFVQAIEMGSTIVRVGSSIFGARAKKT 251
>gi|296117543|ref|ZP_06836127.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium
ammoniagenes DSM 20306]
gi|295969274|gb|EFG82515.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium
ammoniagenes DSM 20306]
Length = 238
Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 108/225 (48%), Gaps = 12/225 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSV-SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L L+ +Q IE + A R D+V L+ V+K ++ I + G AEN+ QEA
Sbjct: 18 LAAGLKETRQLIEKLSHEAGR--DTVPELLPVTKFHPAEDIALLAELGITDVAENREQEA 75
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR-FL 120
+ K L DV IG +Q+ K + + + +V EK A L+ + R L
Sbjct: 76 RAKAEELS---DVHFHMIGQVQTKKANHVARWAHSVHSVDTEKLAVALNRGVENAGRDVL 132
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
PV+IQV+ + + G+ + + + L++ GLM +PP + K F + E+
Sbjct: 133 PVFIQVSFDGDTARGGVPLDGVAELAQIIEDLPNLDLRGLMVVPPLDTDAKEVFTTVREL 192
Query: 181 AREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
A + + KLS GM+ D AIASG VR+G+GI G RP
Sbjct: 193 ANKLGEQLERTMKLSAGMSADLADAIASGTDIVRVGTGIMGARPL 237
>gi|300814706|ref|ZP_07094956.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus sp. oral
taxon 836 str. F0141]
gi|300511179|gb|EFK38429.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus sp. oral
taxon 836 str. F0141]
Length = 228
Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 115/232 (49%), Gaps = 20/232 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKR---PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
MS+ + L+ ++IE AKR + V+L+AV+K ++ I+ A+ G EN+
Sbjct: 1 MSVKDNLKFVMEEIEK----AKRHSLTNEDVNLIAVTKNHETDVIKEAIDLGITDIGENR 56
Query: 58 LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+QE K K L V IG+LQ+NKV I + +I+++ K A +
Sbjct: 57 VQELKSKIDELGPI--VNYHMIGNLQTNKVKYIYNRVYMIQSLDTLKLAKEIDKRAGSDG 114
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP------- 170
+ IQ+N G E QKSGI T F+ +++ GLM I P +
Sbjct: 115 IEVNCLIQINIGNEEQKSGIAYEDTLKFIYNLMDFKHISIRGLMAIAPNTDDKQYLRRLF 174
Query: 171 KPHFYLLSEIARE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ F + +I +E ++ LSMGM+ D+++AI G+ VRIG+ IFG+R
Sbjct: 175 RKMFEMKEKIIKENISSVRMDYLSMGMSSDYQIAIEEGSNMVRIGTKIFGKR 226
>gi|87125612|ref|ZP_01081457.1| hypothetical protein RS9917_02526 [Synechococcus sp. RS9917]
gi|86166912|gb|EAQ68174.1| hypothetical protein RS9917_02526 [Synechococcus sp. RS9917]
Length = 221
Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 112/210 (53%), Gaps = 10/210 (4%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
+++A P S L+AVSK + IR + GQV F E+++QEA +K L +Q
Sbjct: 12 SVMAALPP-SARLLAVSKGHPAAAIRDLAALGQVAFGESRVQEALRKQEELADLTQLQWH 70
Query: 78 FIGSLQSNKVSEIVSLFDVI---ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
FIG LQ+NKV +++ F I ++++ + S ++ E Q R V +QV + +K
Sbjct: 71 FIGRLQANKVRQVLRAFGTIHSLDSLALCERVSRIAGEEGCQPR---VMLQVKLRPDPKK 127
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTKLSM 191
G P + + ++ ++ GLM I P P+ L + +A + L++ SM
Sbjct: 128 GGWDPEELRQVWPDLQRLPHCSIVGLMTIAPLGLAPEERLALFRDCRQLADDLGLSECSM 187
Query: 192 GMTRDFELAIASGATSVRIGSGIFGERPCQ 221
GM+ D+ A+++GAT VR+GS +FGER Q
Sbjct: 188 GMSGDWAEAVSAGATWVRLGSALFGERSVQ 217
>gi|261338600|ref|ZP_05966484.1| pyridoxal phosphate enzyme, YggS family [Bifidobacterium gallicum
DSM 20093]
gi|270276641|gb|EFA22495.1| pyridoxal phosphate enzyme, YggS family [Bifidobacterium gallicum
DSM 20093]
Length = 269
Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 102/226 (45%), Gaps = 28/226 (12%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---------- 70
A RP+ V L+A +K D ++ A+ G + EN+ QE K LR+
Sbjct: 41 AGRPEGCVQLLAATKTRDVGEVHAAIQAGIRLIGENRPQEILAKIDGLRELCAADGLQVG 100
Query: 71 ------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
DV L IG LQSNK+ +I+ +VIE+V A ++ + + + V +
Sbjct: 101 RQDDDAAPDVPLHLIGQLQSNKIGKILPFTNVIESVDSLDLAQKIARRAVAHTMTVDVLL 160
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA 181
+VN E KSG P Q +D + + GLM + + + + F L E+
Sbjct: 161 EVNESGETSKSGCAPEQARDIAGAIGALDGVRLVGLMTVGAHVDDEAIVRQGFAHLRELR 220
Query: 182 REC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E + +LSMGM+ D AI G+T VR+G IFGER
Sbjct: 221 DELVASGEQGTDECLQLSMGMSGDAAWAIDEGSTQVRLGRAIFGER 266
>gi|187779883|ref|ZP_02996356.1| hypothetical protein CLOSPO_03479 [Clostridium sporogenes ATCC
15579]
gi|187773508|gb|EDU37310.1| hypothetical protein CLOSPO_03479 [Clostridium sporogenes ATCC
15579]
Length = 225
Score = 91.7 bits (226), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 101/205 (49%), Gaps = 11/205 (5%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
PKD V+L+ VSK + I A G F ENK+QE K +++ D++ IG LQ
Sbjct: 17 PKD-VTLIGVSKTKPVEYIEEAYEAGLRDFGENKVQELVDKIEYFKEKKDIRWHLIGHLQ 75
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NK+ IV +I ++ + + + KQ++ V IQ+N G E K GI
Sbjct: 76 RNKIKYIVGKVYLIHSLDSIRLLEEIEDKYKKQNKIANVLIQINIGKEESKYGIYKEDLG 135
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPK--PHFYLLSEI--------ARECKLTKLSMGM 193
+ + + + +GLM I P + + +F + EI + ++ LSMGM
Sbjct: 136 NMLDAIEKCENVKAKGLMAIIPKGSDEECAKYFRQMKEIFSTLQNKSFKNIEVKYLSMGM 195
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
T D+ +AI G+ +R+G GIFG+R
Sbjct: 196 TGDYPIAIKEGSNMIRVGQGIFGKR 220
>gi|72161519|ref|YP_289176.1| hypothetical protein Tfu_1115 [Thermobifida fusca YX]
gi|71915251|gb|AAZ55153.1| Protein of unknown function UPF0001 [Thermobifida fusca YX]
Length = 240
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 104/227 (45%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ ++++ + A R + +++VAV+K + +R+ G EN+ QEA
Sbjct: 10 LAANLERVRERVAAACAAAGRKPEEITIVAVTKQYPASDVRLLAELGIRDIGENRDQEAA 69
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K R + D+ F+G LQ+NK + DV+ +V R + + L + R +
Sbjct: 70 PKAAECR-DLDLTWHFVGQLQTNKARSVARYADVVHSVDRMRLVTELGRRVRAAERTVTC 128
Query: 123 YIQVNTGYEIQ------KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
IQVN + + + G P + L + G+M + P G+P+ F
Sbjct: 129 LIQVNLDPDSEQGVLGPRGGADPGDVPALAEAVEAEEGLALGGVMAVAPRQGDPREAFDR 188
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +A E + T +S GM+ D E AI GAT +RIG+ + G R
Sbjct: 189 LKTVAEELQARYPHATVISAGMSGDLEAAIERGATHLRIGTALLGNR 235
>gi|56964112|ref|YP_175843.1| hypothetical protein ABC2347 [Bacillus clausii KSM-K16]
gi|56910355|dbj|BAD64882.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 229
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 110/218 (50%), Gaps = 15/218 (6%)
Query: 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69
K ++ + + R D V ++AV+K V + A+ G EN+++ A +K +
Sbjct: 12 IKMRVRQACERSGRAIDDVRIIAVTKYVSVATAKQAVEAGIADIGENRIEGALEKAAAI- 70
Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
+L F+GSLQS KV IV++ I ++ R A + + ++ + + ++QVN
Sbjct: 71 --GQARLHFVGSLQSRKVKNIVNVVSCIHSLDRLSLAKEID-KRLEPGKTIDCFVQVNVS 127
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKL 186
E K+G+ P++ + F+ + V GLM + P + +P F L E+ + K
Sbjct: 128 GEQSKNGLSPDEVRPFINELAAYPAVRVIGLMTMAPFEQDAERTRPIFSKLRELRDQIKA 187
Query: 187 --------TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
T+LSMGM+ DFE+AI GAT +R+G+ + G
Sbjct: 188 DKLSSAPCTELSMGMSNDFEVAIEEGATFIRLGTSLVG 225
>gi|91216469|ref|ZP_01253435.1| hypothetical protein P700755_02917 [Psychroflexus torquis ATCC
700755]
gi|91185263|gb|EAS71640.1| hypothetical protein P700755_02917 [Psychroflexus torquis ATCC
700755]
Length = 218
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 100/203 (49%), Gaps = 12/203 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+++ LVAVSK ++ + A GQ IF ENK+QE KW L K D++ +G +Q+N
Sbjct: 18 ENIDLVAVSKTKPNEDLLEAYKAGQRIFGENKVQEMTDKWDALPK--DIKWHMVGHVQTN 75
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV + D+I V K ++ ++ R + +QV E K G+ P K F
Sbjct: 76 KVKYMAPYVDLIHAVQNMKLLKEINKRAVENDRVIDCLLQVKIAEEESKYGMSPEDLKLF 135
Query: 146 VILCRQKYQLNV--EGLMCIPPAMGNPKP---HFYLLSEIARECKLTK-----LSMGMTR 195
+ + NV +GLM + + + F +L + +E T+ LSMGM+
Sbjct: 136 LKDDKLAELKNVRLKGLMAMATFTEDEEQIHREFKILETLYKETSQTQKDFSILSMGMSG 195
Query: 196 DFELAIASGATSVRIGSGIFGER 218
D+++A+ VRIGS IFG R
Sbjct: 196 DYKIAMQHDTNMVRIGSSIFGAR 218
>gi|297626139|ref|YP_003687902.1| alanine racemase [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
gi|296921904|emb|CBL56464.1| alanine racemase [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 250
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 87/184 (47%), Gaps = 15/184 (8%)
Query: 52 IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
+F EN +QE K LR + D IG LQSNKV+ + L D + + K A L
Sbjct: 67 LFGENHVQEIVAKTDELRPDDDFGFALIGHLQSNKVNAVAGLIDEFQALDSLKLAGRLDR 126
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171
+ R L V ++VNT E K GI + +DF L V GLM + A+ +P
Sbjct: 127 RLNTLGRGLRVLVEVNTSGEAAKHGIDVDDAQDFCRALADFDALTVAGLMTV--AVNSPD 184
Query: 172 PH---------FYLLSEIARECKL----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L S + + L +LSMGM+ D+ LAI GAT+VR+G+ +FG R
Sbjct: 185 RERVAACFDRLVALQSRLRDDGVLGSDWAELSMGMSGDYPLAIEHGATTVRVGTALFGPR 244
Query: 219 PCQT 222
T
Sbjct: 245 DYGT 248
>gi|307331670|ref|ZP_07610777.1| alanine racemase domain protein [Streptomyces violaceusniger Tu
4113]
gi|306882696|gb|EFN13775.1| alanine racemase domain protein [Streptomyces violaceusniger Tu
4113]
Length = 239
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 113/235 (48%), Gaps = 24/235 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L ++I + A R ++ V+L+ V+K + +R+ G AEN+ QEA
Sbjct: 8 LAANLGRVTERISAACAEAGRKREEVTLIVVTKTYPASDVRLLAELGVRHVAENRDQEAA 67
Query: 63 KKW-----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K +PL W F+G LQ+NKV + S DV+++V R++ LS + +
Sbjct: 68 PKAAECADLPL--IW----HFVGQLQTNKVRSVSSYADVVQSVDRKRLVDALSRAAVGAA 121
Query: 118 RFLPVYIQV----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM----GN 169
R + V IQV ++ + G+ P + + L ++GLM + P G
Sbjct: 122 REMGVLIQVALDADSDERGARGGVGPGGVERLAESVAEAEGLRLDGLMTVAPLTGPYEGR 181
Query: 170 PKPHFYLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P+ F L EI+ ++ +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 182 PRAAFDRLMEISSRLRVAHPAANMVSAGMSSDLEEAVAAGATHVRVGTAVLGVRP 236
>gi|255527755|ref|ZP_05394608.1| alanine racemase domain protein [Clostridium carboxidivorans P7]
gi|296186667|ref|ZP_06855069.1| pyridoxal phosphate enzyme, YggS family [Clostridium
carboxidivorans P7]
gi|296187056|ref|ZP_06855455.1| pyridoxal phosphate enzyme, YggS family [Clostridium
carboxidivorans P7]
gi|255508542|gb|EET84929.1| alanine racemase domain protein [Clostridium carboxidivorans P7]
gi|296048343|gb|EFG87778.1| pyridoxal phosphate enzyme, YggS family [Clostridium
carboxidivorans P7]
gi|296048704|gb|EFG88136.1| pyridoxal phosphate enzyme, YggS family [Clostridium
carboxidivorans P7]
Length = 220
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 104/214 (48%), Gaps = 12/214 (5%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
EN ++ + V+L+AVSK ++I+ G F ENK+QE K+ L K D+
Sbjct: 5 ENVKMIRNTIEKDVTLIAVSKTKPVEEIKKVYDIGIRDFGENKVQELIDKYDKLPK--DI 62
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
+ IG LQ NKV IV +I+++ + + + IQ+N G E K
Sbjct: 63 KWHLIGHLQRNKVKYIVGKVHLIQSLDSIRLLQEIDKHYSANNEIANTLIQINIGREESK 122
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLSEIARECK------- 185
+G++ + + + C + V+GLM I P + +F + +I + K
Sbjct: 123 TGVLLEKLDELLQQCENCNNVKVKGLMAIVPQATEESCRCYFKKMKDIFEDLKKKSFKNI 182
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ D+ +A+ G+ +R+G GIFG+R
Sbjct: 183 QMDILSMGMSGDYSMALQEGSNMIRVGQGIFGKR 216
>gi|188990801|ref|YP_001902811.1| hypothetical protein xccb100_1405 [Xanthomonas campestris pv.
campestris str. B100]
gi|167732561|emb|CAP50755.1| Conserved hypothetical protein [Xanthomonas campestris pv.
campestris]
Length = 227
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 99/215 (46%), Gaps = 17/215 (7%)
Query: 17 SAILAKRPKDSVS--LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---E 71
+AI A P D+ L+AVSK + + + GQ F EN +QEA K L+ E
Sbjct: 11 AAIQAATPPDTAPARLLAVSKTQPADAVAALAAQGQQAFGENYVQEAAAKIAQLQALQLE 70
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
W IG LQSNK FD ++TV R K +LL+ L V IQVN E
Sbjct: 71 W----HLIGHLQSNKADMASQCFDWVQTVDRAKLIALLARHRPDGRAPLNVLIQVNIDDE 126
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI-----ARE 183
K G P L + GLM IP P + F + + ++
Sbjct: 127 DSKHGCAPEAIDVLAAEIATHPPLQLRGLMAIPAPFPEVTRRHQAFARMQALFATLRSQY 186
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ DF AIA+GAT VR+G+ +FG+R
Sbjct: 187 PQADTLSMGMSADFADAIAAGATMVRVGTALFGQR 221
>gi|300865596|ref|ZP_07110373.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
gi|300336411|emb|CBN55523.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
Length = 232
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 104/208 (50%), Gaps = 21/208 (10%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SV L+AVSK V +R A + G F E+++QEA K ++ D+ IG LQ+NK
Sbjct: 18 SVRLIAVSKQVSVDAMRSAYAAGVRDFGESRIQEAADKQAQMQDLPDITWHLIGHLQANK 77
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP-VYIQVNTGYEIQKSGI-MPNQTKD 144
++ V F I +V K A L + ++ + P +QV + K G +P D
Sbjct: 78 AAKAVQQFQWIHSVDSLKLAQRLD-RLAEELAYQPQACLQVKILPDRDKYGWSIPELLAD 136
Query: 145 F--VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC------------KLTKLS 190
+ CR L ++GLM IPP +G + L ARE ++ +LS
Sbjct: 137 LPEINQCR---SLRIKGLMTIPP-LGLDEAQTISLFNTARELAEKIRQQNWSHIEMQQLS 192
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGM+ D+ LAI +GAT VR+G +FGER
Sbjct: 193 MGMSGDYHLAIQAGATMVRVGRTLFGER 220
>gi|325288176|ref|YP_004263966.1| hypothetical protein Celly_3279 [Cellulophaga lytica DSM 7489]
gi|324323630|gb|ADY31095.1| protein of unknown function UPF0001 [Cellulophaga lytica DSM 7489]
Length = 222
Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 102/206 (49%), Gaps = 15/206 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
++V+LVAVSK + A + GQ IF ENK+QE +KW + K D+Q IG +Q+N
Sbjct: 16 ETVTLVAVSKTKPVSDLEEAYAAGQRIFGENKIQEMTQKWEVMPK--DIQWHMIGHVQTN 73
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV + +I V K ++ + K +R + +Q++ E K G+ +
Sbjct: 74 KVKYMAEYVSLIHGVDSLKLLKEINKQAKKYNRVINCLLQMHIAEESTKFGLDLEELNSL 133
Query: 146 VI--LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLTK--------LSMG 192
V + + + V GLM + N K F L E+ + TK LSMG
Sbjct: 134 VSSDVFKTLENIKVVGLMGMATFTDNQNQVKKEFGTLKEVFSSLQSTKSTNLDVKILSMG 193
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D+++AI G+T VRIGS IFG R
Sbjct: 194 MSGDYKIAIDQGSTMVRIGSSIFGSR 219
>gi|288928406|ref|ZP_06422253.1| pyridoxal phosphate enzyme, YggS family [Prevotella sp. oral taxon
317 str. F0108]
gi|288331240|gb|EFC69824.1| pyridoxal phosphate enzyme, YggS family [Prevotella sp. oral taxon
317 str. F0108]
Length = 220
Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 102/206 (49%), Gaps = 16/206 (7%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V LVAVSK ++++ A GQ IF E++ QE +K L K D+ FIG LQ+NK
Sbjct: 15 HVRLVAVSKFHPNEELMAAYEQGQRIFGESQEQELSRKAAELPK--DIAWHFIGHLQTNK 72
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V I D+IE V + ++ + K R + V ++++ E K G P+ ++ +
Sbjct: 73 VKYIAPFIDMIEAVDSLRLLREINKQAEKCGRVIDVLLELHVAQEATKYGFTPDACREML 132
Query: 147 IL--CRQKYQLNVEGLMCIPPAMGNPK-------PHFYLLSEI-----ARECKLTKLSMG 192
R+ + + GLM + + N + ++ EI A + + S G
Sbjct: 133 ASGEWRKLSHIRICGLMTMASNVDNEEQIRAEMTTAWHFFDEIKSQYFAHDDAFKERSWG 192
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D+ +A+ G+T VR+G+ IFGER
Sbjct: 193 MSHDYPIALQCGSTMVRVGTNIFGER 218
>gi|89890568|ref|ZP_01202078.1| conserved hypothetical protein, TIM-barrel fold [Flavobacteria
bacterium BBFL7]
gi|89517483|gb|EAS20140.1| conserved hypothetical protein, TIM-barrel fold [Flavobacteria
bacterium BBFL7]
Length = 222
Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 106/235 (45%), Gaps = 31/235 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L F++ IE PK +LVAVSK ++ A GQ F ENK+QE
Sbjct: 1 MSIKDHLLRFRESIE--------PK--ATLVAVSKTKPISDLQEAYDAGQRHFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW L K D+ IG Q NKV + +I +V + ++ + +K R +
Sbjct: 51 MTEKWETLPK--DIHWHMIGHTQRNKVKYMAPYVHLIHSVDSPRLLKEINKQAVKNERVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY----QLNVEGLMCIPPAMGNPK----- 171
+Q++ E K G +Q + +L + + + GLM + N +
Sbjct: 109 DCLLQIHIAEEETKFGF--DQNELLELLSSDAFAGYKNVRITGLMGMATFTDNKEQVRKE 166
Query: 172 --------PHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
H I+ L LSMGMT D+E+A+ G+T VRIGS IFG R
Sbjct: 167 FKSLKTLLDHINDNHLISDSHDLKTLSMGMTGDYEIALEEGSTMVRIGSAIFGSR 221
>gi|224437555|ref|ZP_03658513.1| hypothetical protein HcinC1_06300 [Helicobacter cinaedi CCUG 18818]
Length = 225
Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 116/228 (50%), Gaps = 22/228 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ ++IE A LA +SLVAVSK + IR CGQ F ENK+Q+ +
Sbjct: 2 LALQLERILRRIER-ARLAYNAHQIISLVAVSKYQNVDSIRALYECGQRAFGENKVQDLR 60
Query: 63 KKW-----IPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLS--LEMI 114
K +PL EW FIG LQ NK++ +++L +I +V KTA + L+ +
Sbjct: 61 LKAQILDDVPL--EW----HFIGKLQENKINALLALKPSLIHSVDSLKTAQAIQKRLQTL 114
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKP- 172
+ +Q+N EI KSG+ ++ + + + + +EG+MCI N K
Sbjct: 115 LGEAKVRALLQINAADEISKSGVSVESAREVYDEILKTCPNIIMEGVMCIGANSPNRKEI 174
Query: 173 --HFYLLSEIARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
F S+I + LSMGM+ DFE+AIA GA VRIGS +F
Sbjct: 175 EQSFQKTSDIFHSLQDKGAKILSMGMSGDFEIAIAYGANLVRIGSKLF 222
>gi|305667230|ref|YP_003863517.1| hypothetical protein FB2170_13311 [Maribacter sp. HTCC2170]
gi|88708164|gb|EAR00402.1| hypothetical protein FB2170_13311 [Maribacter sp. HTCC2170]
Length = 226
Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 103/205 (50%), Gaps = 16/205 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
D V+LVAVSK + I A GQ IF ENK+QE +KW L K D+Q IG +Q N
Sbjct: 24 DDVTLVAVSKTKPNTSILEAYEAGQRIFGENKIQEMAQKWEALPK--DIQWHMIGHVQRN 81
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV + +I V + ++ + K +R + +QV+ E K G+ ++ K
Sbjct: 82 KVKYMSEFVSLIHGVDSFRLLKEINKQAKKHNRTISCLLQVHIADEETKFGLDESELK-- 139
Query: 146 VILCRQKYQ----LNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-----LTKLSMGM 193
I ++++ + + GLM + N + F L ++ K ++ LSMGM
Sbjct: 140 TITNSEEFKRLENIKIIGLMGMATFTNNKTQIRKEFKNLKDVFDVLKESLPHVSTLSMGM 199
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D+ +AI G+T VRIGS IFG R
Sbjct: 200 SGDYTVAIEEGSTMVRIGSSIFGAR 224
>gi|313144009|ref|ZP_07806202.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
gi|313129040|gb|EFR46657.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
Length = 222
Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 108/213 (50%), Gaps = 21/213 (9%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW-----IPLRKEW 72
A LA +SLVAVSK + IR CGQ F ENK+Q+ + K +PL EW
Sbjct: 13 ARLAYNAHQIISLVAVSKYQNVDSIRALYECGQRAFGENKVQDLRLKAQILDDVPL--EW 70
Query: 73 DVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLS--LEMIKQSRFLPVYIQVNTG 129
FIG LQ NK++ +++L +I +V KTA + L+ + + +Q+N
Sbjct: 71 ----HFIGKLQENKINALLALKPSLIHSVDSLKTAQAIQKRLQTLLGEAKVRALLQINAA 126
Query: 130 YEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECK 185
EI KSG+ ++ + + + + +EG+MCI N K F S+I +
Sbjct: 127 DEISKSGVSVESAREVYDEILKTCPNIIMEGVMCIGANSPNRKEIEQSFQKTSDIFHSLQ 186
Query: 186 ---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
LSMGM+ DFE+AIA GA VRIGS +F
Sbjct: 187 DKGAKILSMGMSGDFEIAIAYGANLVRIGSKLF 219
>gi|311063717|ref|YP_003970442.1| hypothetical protein BBPR_0280 [Bifidobacterium bifidum PRL2010]
gi|310866036|gb|ADP35405.1| Conserved hypothetical protein with alanine racemase, N-terminal
domain [Bifidobacterium bifidum PRL2010]
Length = 274
Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 101/231 (43%), Gaps = 33/231 (14%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---------- 70
A R SV L+A +K D +I A+ G + EN+ QE K LR+
Sbjct: 41 AGRAPGSVKLLAATKTRDVGEIMAAIDAGVRMIGENRPQEVMAKAEGLRRLCADRGFALG 100
Query: 71 --EWD---------VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+ D + IG LQ+NK+ +I+ + IE+V + A ++ + +
Sbjct: 101 TGDGDTTRPSDAEHIPFHLIGQLQANKIGKILPDVNTIESVDGVELAQRIARRAVARGIT 160
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK------PH 173
+ V ++VN E KSG P D Q + +EGLM I + + H
Sbjct: 161 VGVLLEVNESGEASKSGCDPQAAVDIAAQIAQLDGIRLEGLMTIGAHVDDEATIRACFAH 220
Query: 174 F------YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L S T+LSMGMT D LAIA GAT VR+G+ IFGER
Sbjct: 221 LRGTRDTILASRAPGTEHCTELSMGMTHDMALAIAEGATIVRVGTAIFGER 271
>gi|282877895|ref|ZP_06286704.1| pyridoxal phosphate enzyme, YggS family [Prevotella buccalis ATCC
35310]
gi|281299896|gb|EFA92256.1| pyridoxal phosphate enzyme, YggS family [Prevotella buccalis ATCC
35310]
Length = 221
Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 103/211 (48%), Gaps = 16/211 (7%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81
KR D V LVA+SK + I A + GQ +F E++ QE +K L D++ FIG
Sbjct: 13 KRLPDDVCLVAISKYHPKEMIASAYAAGQRVFGESREQELAEKVEALPN--DIEWHFIGH 70
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQ+NKV I +IE+V K ++ + +R + V ++++ E K G ++
Sbjct: 71 LQTNKVKYIAPYISMIESVDSPKLLREINKHAARSNRVIDVLLELHIAEEATKYGFTLDK 130
Query: 142 TKDFVILCRQKYQLNVE--GLMC----------IPPAMGNPKPHFYLLSE--IARECKLT 187
+DF+ + + NV GLM I M K F + E A +
Sbjct: 131 CRDFLEVGEWRELSNVRICGLMMMASNVDDERQIRQEMLTAKDFFNEVKERYFADQPSFK 190
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ S GM+ D+ +A+ G+T VR+GS IFGER
Sbjct: 191 QRSWGMSHDYLIAVTCGSTMVRVGSAIFGER 221
>gi|195452638|ref|XP_002073440.1| GK13144 [Drosophila willistoni]
gi|194169525|gb|EDW84426.1| GK13144 [Drosophila willistoni]
Length = 249
Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 123/243 (50%), Gaps = 30/243 (12%)
Query: 7 LQVFKQKIENSAILAKRPKDSVS----LVAVSKMVDSKKIRVALSCGQVIFAENKLQE-- 60
LQ+ ++I+ +LA RPK+ + LVAVSK + I A GQ F EN +QE
Sbjct: 10 LQLALKRIDE--VLANRPKEIQTPKPILVAVSKTKPPEAIIEAYEAGQRDFGENYVQELV 67
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIK-- 115
K + +R + +++ FIG LQ+NK+++++SL +I+TV EK A+ L K
Sbjct: 68 EKSQHPDIRSKCPEIRWHFIGHLQNNKINKVLSLPNLHMIQTVDSEKLATRLDAAWAKLE 127
Query: 116 --QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ-LNVEGLMCIPPAMG---- 168
+ L V IQ+NT E KSGI ++ + + L + G+M I A G
Sbjct: 128 PKPEQPLRVLIQINTSQEDVKSGIEISKAPSLYQYIKSNLKNLQLMGIMTIG-AYGFDYS 186
Query: 169 -NPKPHFYLLSEIARE-CKLTKL-------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
P P F L + R C+ L SMGM+ D++ AI G+T VRIG+ IFG R
Sbjct: 187 NGPNPDFVSLINVQRSICEANNLNPESVLVSMGMSNDYDKAIEMGSTIVRIGTSIFGHRA 246
Query: 220 CQT 222
+
Sbjct: 247 AKN 249
>gi|33860951|ref|NP_892512.1| hypothetical protein PMM0394 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33639683|emb|CAE18853.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 212
Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 115/228 (50%), Gaps = 28/228 (12%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + N LQ+ KQ N V+L+AVSK SK+I++ + GQ F E++ QE
Sbjct: 1 MEISNYLQIKKQLPLN-----------VNLLAVSKGFSSKEIKIINNLGQNDFGESRFQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K I L +++ FIG +Q+NK+ +IV F+ I +V + +S ++ R
Sbjct: 50 AIEKKILLDDLKNIKWHFIGRVQTNKIRKIVQNFEYIHSVDSYEKLLKISNVSFEEKRNP 109
Query: 121 PVYIQVNTGYEIQKSGIMP-------NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH 173
V +QV + K G P +Q K+F + ++GLM I P + +
Sbjct: 110 IVMLQVKLSDDPNKGGFNPKVLLEKWDQIKEF-------KSIKIKGLMTINPKGLSSIEN 162
Query: 174 FYLLSE---IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + +A KL SMGM+ D+E A+ +G+T +R+GS IFG R
Sbjct: 163 IKLFKKCRYLADSLKLQDCSMGMSGDWEEAVKAGSTWLRLGSTIFGNR 210
>gi|300773394|ref|ZP_07083263.1| YggS family pyridoxal phosphate enzyme [Sphingobacterium
spiritivorum ATCC 33861]
gi|300759565|gb|EFK56392.1| YggS family pyridoxal phosphate enzyme [Sphingobacterium
spiritivorum ATCC 33861]
Length = 229
Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 101/207 (48%), Gaps = 20/207 (9%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V+LVAVSK ++ I A GQ +F EN +QE +K L K D++ IG LQ+NKV
Sbjct: 19 VTLVAVSKTKPNEDILQAYEAGQRVFGENMVQELVEKQEQLPK--DIEWHLIGHLQTNKV 76
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
I +IE+V K ++ +K R + +QV E K G+ + T+ +
Sbjct: 77 KYIAPFIHMIESVDSIKLLKEINKHALKHDRIIDCLLQVYIADEDTKFGL--DHTELIEL 134
Query: 148 LCRQKY----QLNVEGLMCIPPAMGNPK---PHFYLL---------SEIARECKLTKLSM 191
L ++ + + GLM I N K FY L S +E LSM
Sbjct: 135 LRDDEFSSLKNIRIRGLMGIATNTENEKVIKEEFYELKMLFDGVKSSFFRKEDTFDTLSM 194
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D+ LAI G+T +R+GS +FG+R
Sbjct: 195 GMSSDYRLAIEQGSTMIRLGSTVFGKR 221
>gi|283797927|ref|ZP_06347080.1| pyridoxal phosphate enzyme, YggS family [Clostridium sp. M62/1]
gi|291074395|gb|EFE11759.1| pyridoxal phosphate enzyme, YggS family [Clostridium sp. M62/1]
Length = 234
Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 113/223 (50%), Gaps = 13/223 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ +++I + + R + V+L++VSK + ++ A G F EN +QE +K
Sbjct: 6 LEEVRERIRLACERSGRRVEDVTLISVSKTKPVEMLQEAYEAGSRDFGENHVQEILEKHG 65
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ + DV+ IG LQ NKV +++ +I +V A + E K+ + + ++V
Sbjct: 66 QMPE--DVRWHMIGHLQKNKVRQVIDKVVLIHSVDTVGLAEQIEKEAAKKDLDIDILLEV 123
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH-------FYLLSE 179
N E K G P + ++ V ++++GLM I P + N + + + L +
Sbjct: 124 NVAGEESKFGFCPEEVEEAVRKISLLPHVHIKGLMTIAPFVVNSEDNREVFKKLYNLYVD 183
Query: 180 IA----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I ++ LSMGMT D+E+AI GAT +R+G+GIFG R
Sbjct: 184 IRGKNIDNVSMSVLSMGMTGDYEVAIEEGATMIRVGTGIFGAR 226
>gi|310286820|ref|YP_003938078.1| Alanine racemase [Bifidobacterium bifidum S17]
gi|309250756|gb|ADO52504.1| Alanine racemase [Bifidobacterium bifidum S17]
Length = 274
Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 101/231 (43%), Gaps = 33/231 (14%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---------- 70
A R SV L+A +K D +I A+ G + EN+ QE K LR+
Sbjct: 41 AGRAPGSVKLLAATKTRDVGEIMAAIDAGVRMIGENRPQEVMAKAEGLRRLCADRGFALG 100
Query: 71 --EWD---------VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+ D + IG LQ+NK+ +I+ + IE+V + A ++ + +
Sbjct: 101 TGDGDTTRPSDAEHIPFHLIGQLQANKIGKILPDVNTIESVDGVELAQRIARRAVARGIT 160
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK------PH 173
+ V ++VN E KSG P D Q + +EGLM I + + H
Sbjct: 161 VGVLLEVNESGEASKSGCDPQAAVDIAAQIAQLDGIRLEGLMTIGAHVDDEATIRACFAH 220
Query: 174 F------YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L S T+LSMGMT D LAIA GAT VR+G+ IFGER
Sbjct: 221 LRGTRDTILASRAPGTEHCTELSMGMTHDMALAIAEGATIVRVGTAIFGER 271
>gi|15595591|ref|NP_249085.1| hypothetical protein PA0394 [Pseudomonas aeruginosa PAO1]
gi|218889136|ref|YP_002438000.1| putative PLP dependent enzyme [Pseudomonas aeruginosa LESB58]
gi|254237371|ref|ZP_04930694.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|254243494|ref|ZP_04936816.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|296386893|ref|ZP_06876392.1| putative PLP dependent enzyme [Pseudomonas aeruginosa PAb1]
gi|313111985|ref|ZP_07797772.1| hypothetical protein PA39016_004070007 [Pseudomonas aeruginosa
39016]
gi|141308|sp|P24562|Y394_PSEAE RecName: Full=UPF0001 protein PA0394
gi|9946247|gb|AAG03783.1|AE004476_13 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|454838|gb|AAA25959.1| ORF 6; putative [Pseudomonas aeruginosa PAO1]
gi|126169302|gb|EAZ54813.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126196872|gb|EAZ60935.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|218769359|emb|CAW25119.1| putative PLP dependent enzyme [Pseudomonas aeruginosa LESB58]
gi|310884274|gb|EFQ42868.1| hypothetical protein PA39016_004070007 [Pseudomonas aeruginosa
39016]
Length = 230
Score = 91.3 bits (225), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 96/211 (45%), Gaps = 6/211 (2%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I +A A R +V L+AVSK + +R A + G F EN LQEA K L +
Sbjct: 14 RIREAAQAAGRDPATVGLLAVSKTKPAAAVREAHAAGLRDFGENYLQEALGKQAEL-ADL 72
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
+ FIG +QSNK I F + +V R K A LS + L V +QVN E
Sbjct: 73 PLNWHFIGPIQSNKTRPIAEHFQWVHSVDRLKIAQRLSEQRPAGLPPLNVCLQVNVSGEA 132
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYL----LSEIARECKLT 187
KSG P +Q L + GLM IP P H + L
Sbjct: 133 SKSGCAPEDLPALAEAVKQLPNLRLRGLMAIPEPTAERAAQHAAFARLRELLLDLNLGLD 192
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D E AI GAT VRIG+ +FG R
Sbjct: 193 TLSMGMSDDLEAAIGEGATWVRIGTALFGAR 223
>gi|293189598|ref|ZP_06608317.1| alanine racemase domain protein [Actinomyces odontolyticus F0309]
gi|292821498|gb|EFF80438.1| alanine racemase domain protein [Actinomyces odontolyticus F0309]
Length = 187
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 85/179 (47%), Gaps = 14/179 (7%)
Query: 51 VIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS 110
++ N++QEA+ +R+ ++ IG LQSNK++ ++ D IE++ AS +
Sbjct: 10 ILLGHNRVQEARATAEAIREVPGARIHLIGPLQSNKINHALACVDAIESLDSPALASKID 69
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAM 167
+ + LPV+++VN E K G P V + L + G M + P
Sbjct: 70 ---ARTTGTLPVFVEVNVSGEATKHGCAPADVSALVDVVGASAHLQLAGFMTVGLNSPVE 126
Query: 168 GNPKPHFYLLSEIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + L I E LSMGM+RD E AIA GAT VR+G+ IFG R
Sbjct: 127 ADVRAAYAQLRGIRDEAAAHLGINESDLALSMGMSRDLEWAIAEGATIVRLGTAIFGAR 185
>gi|194014843|ref|ZP_03053460.1| pyridoxal phosphate enzyme, YggS family [Bacillus pumilus ATCC
7061]
gi|194013869|gb|EDW23434.1| pyridoxal phosphate enzyme, YggS family [Bacillus pumilus ATCC
7061]
Length = 229
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 108/229 (47%), Gaps = 19/229 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L+ ++I + A R D +S+VAV+K V ++ + A G + F EN+ Q
Sbjct: 1 MNVRENLRQINEQINEACKRAGRNPDDISVVAVTKYVSIERAQEAKEAGILHFGENRDQG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + E + FIGSLQ+ KV ++ D + ++ R A+ + + +
Sbjct: 61 LLEKQAAITDE-SISWHFIGSLQTRKVKSVIQSIDYLHSLDRISLANEIEK---RADHTV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP-------------AM 167
++QVNT E K G+ FV + + GLM + P +
Sbjct: 117 RCFVQVNTSLEESKHGLQNEDVIPFVKQLADFKHIEIAGLMTMAPFTDDHTVIRNCFKTL 176
Query: 168 GNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
N + L+++ C+ LSMGM+ DFE+AI GAT VRIGS + G
Sbjct: 177 KNLQEEVKHLNQVNAPCQ--HLSMGMSNDFEIAIEEGATFVRIGSSLVG 223
>gi|328950415|ref|YP_004367750.1| protein of unknown function UPF0001 [Marinithermus hydrothermalis
DSM 14884]
gi|328450739|gb|AEB11640.1| protein of unknown function UPF0001 [Marinithermus hydrothermalis
DSM 14884]
Length = 214
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 101/196 (51%), Gaps = 8/196 (4%)
Query: 26 DSVSLVAVSKMVDSKKI-RVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
DSV LVAV+K ++I R L+ G E+++QEA+ K L V+ FIG LQ
Sbjct: 22 DSVRLVAVTKGRTLEEIQRCVLAYGNFPLGESRVQEARPKMEALS---GVEWHFIGPLQR 78
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV + F ++ ++ + A L+ ++ V +QVN E QK G+ + D
Sbjct: 79 NKVK-FMRPFALVHSIDSVRLAQALARRAAREGWRARVLLQVNVAREPQKHGVFVEELAD 137
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR---ECKLTKLSMGMTRDFELAI 201
V R+ L + GLM + P P+ ++ E++R L + SMGMT DFE+A+
Sbjct: 138 AVARVRELEALELVGLMTMAPYTERPEEVRWVFRELSRLADRYNLAERSMGMTGDFEVAV 197
Query: 202 ASGATSVRIGSGIFGE 217
GAT VR+G +F E
Sbjct: 198 EEGATLVRVGRALFEE 213
>gi|301763705|ref|XP_002917283.1| PREDICTED: LOW QUALITY PROTEIN: proline synthase co-transcribed
bacterial homolog protein-like [Ailuropoda melanoleuca]
Length = 305
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 127/243 (52%), Gaps = 28/243 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A S GQ F EN
Sbjct: 41 LGIGFALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQRTFGEN 98
Query: 57 KLQEA-KKKWIP--LRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSL 111
+QE +K P L +++ FIG LQ V++++++ ++ +ETV K A ++
Sbjct: 99 YVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLIAVPNLFMLETVDSVKLADKVNS 158
Query: 112 EMIKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAMG 168
K+ L V +QVNT E K G++P++T V K L GLM I + G
Sbjct: 159 SWQKKDSPEKLKVMVQVNTSGEESKHGLLPSETVAVVEHINTKCPSLEFVGLMTIG-SFG 217
Query: 169 N-----PKPHFYLLSEIARE--CKLT------KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ P P F +L + E KL +LSMGM+ DF+ AI G+T+VR+GS IF
Sbjct: 218 HDLSQGPNPDFQVLLSLREELCAKLNVPTDQVELSMGMSADFQHAIEVGSTNVRVGSTIF 277
Query: 216 GER 218
GER
Sbjct: 278 GER 280
>gi|222153416|ref|YP_002562593.1| hypothetical protein SUB1289 [Streptococcus uberis 0140J]
gi|222114229|emb|CAR42810.1| conserved hypothetical protein [Streptococcus uberis 0140J]
Length = 223
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 115/237 (48%), Gaps = 37/237 (15%)
Query: 1 MSLG-NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MSL NK VFK + + + A R +DSVS++AV+K VDS R + G AEN++
Sbjct: 1 MSLKENKEAVFK-AVNEATLSAGRSEDSVSIIAVTKYVDSDIARQLVDTGVSHIAENRVD 59
Query: 60 EAKKKWIPLRKEWDVQL--RFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMI 114
+ K+ L+ D QL IGSLQ KV ++ V F +++VS L+ E+
Sbjct: 60 KFLDKYKALK---DCQLTWHLIGSLQRRKVKDVINYVDYFHALDSVS-------LAKEIQ 109
Query: 115 KQSRF-LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH 173
K++ + ++QVN E K G P + + Q+ + GLM + P +
Sbjct: 110 KRAEHPINCFLQVNVSGEESKHGFAPEEVSHVLDQLADYDQIRLIGLMTMAPFEADQST- 168
Query: 174 FYLLSEIARECK---------------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++EI +E T+LSMGM+ DF +AI GAT VRIG+ F
Sbjct: 169 ---IAEIFKETNQLRQRLQAENRKNMPFTELSMGMSNDFPIAIQEGATFVRIGTSFF 222
>gi|111221636|ref|YP_712430.1| PLP-binding domain-containing protein [Frankia alni ACN14a]
gi|111149168|emb|CAJ60851.1| putative enzyme with PLP-binding domain [Frankia alni ACN14a]
Length = 303
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 117/269 (43%), Gaps = 53/269 (19%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L V +++I +A A R ++L+AVSK + + + + G FAEN+ QEA
Sbjct: 33 LARRLSVIEERIATAARTAGRDPAGLTLIAVSKTYPAADVVMLHTLGARQFAENREQEAG 92
Query: 63 KKWIPLRKEW---------------------------------DVQLRFIGSLQSNKVSE 89
K + +E +V F+G LQ NK
Sbjct: 93 PKVTMVTRELAQVSGDPSAGGGDGLAGAGVAPGAAADPAPGEPNVIWHFVGQLQRNKARS 152
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN----------TGYEIQKSG--- 136
++ D +++V R +LS +++ R L + +QV+ G + SG
Sbjct: 153 VLRWADWVQSVDRSALVGVLSRLAVERGRPLSICLQVSLDSRSDSRGRVGSVVADSGRGG 212
Query: 137 IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-KPHFYLLSEIAR-----ECKLTKLS 190
+ P + L + L + G+M + P G P +P F L +A + T +S
Sbjct: 213 VDPGELPALADLVDEAPGLTLRGVMAVAP-RGEPARPAFERLRAVAERLVVDHPQATVIS 271
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERP 219
GM+ D E A+A GAT +RIG+ +FGERP
Sbjct: 272 AGMSSDLEAAVAEGATHLRIGTALFGERP 300
>gi|208434955|ref|YP_002266621.1| hypothetical protein HPG27_1002 [Helicobacter pylori G27]
gi|208432884|gb|ACI27755.1| hypothetical protein HPG27_1002 [Helicobacter pylori G27]
Length = 222
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 109/203 (53%), Gaps = 21/203 (10%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---EWDVQLRFIGSLQS 84
V +VAVSK + I+ +C Q F ENK+Q+ K K L EW IGSLQ
Sbjct: 28 VKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKTKMHSLEHLPLEW----HMIGSLQE 83
Query: 85 NKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV----YIQVNTGYEIQKSGIMP 139
NK++ ++SL ++ ++ K L+L++ K+ L V +QVN+ YE KSG++P
Sbjct: 84 NKINALLSLKPALLHSLDSLK----LALKIEKRCEILGVNLNALLQVNSAYEESKSGVVP 139
Query: 140 NQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECK-LTKLSMGMT 194
+ + + + +L ++GLMCI + K F ++ + K + LSMGM+
Sbjct: 140 EEALETYSQISETCKRLKLKGLMCIGAHTDDEKKIEKSFITTKKLFDQIKNASVLSMGMS 199
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
DFELAIA GA +RIGS +F +
Sbjct: 200 DDFELAIACGANLLRIGSFLFKD 222
>gi|22298581|ref|NP_681828.1| hypothetical protein tll1037 [Thermosynechococcus elongatus BP-1]
gi|22294761|dbj|BAC08590.1| tll1037 [Thermosynechococcus elongatus BP-1]
Length = 233
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 99/205 (48%), Gaps = 12/205 (5%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V L+AVSK + + IR A G F E+++QEA K L D+ IG LQ+NK
Sbjct: 21 HVRLIAVSKFMPAAAIRAAYEAGIRDFGESRVQEAASKRAELADLTDITWHLIGHLQTNK 80
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP-VYIQVNTGYEIQKSGIMPNQTKDF 145
V + + LFD I TV R K A + + ++ P +QV + QK G + +
Sbjct: 81 VRQALQLFDWIHTVDRWKLAERIDTLLKERGAASPRCLLQVKLRPDPQKYGWEKSDLEAA 140
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-----------ARECKLTKLSMGMT 194
+ L GLM I P P + E+ ++ + + SMGMT
Sbjct: 141 LPQLDALLHLRCWGLMTILPLGLAPSEQLQVFQELRAWGEELSTKGWQQLRWQEYSMGMT 200
Query: 195 RDFELAIASGATSVRIGSGIFGERP 219
+D+ LA+ +GAT VRIG+ IFG+RP
Sbjct: 201 QDYPLAVQAGATMVRIGTAIFGDRP 225
>gi|332291056|ref|YP_004429665.1| alanine racemase domain protein [Krokinobacter diaphorus 4H-3-7-5]
gi|332169142|gb|AEE18397.1| alanine racemase domain protein [Krokinobacter diaphorus 4H-3-7-5]
Length = 215
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 99/200 (49%), Gaps = 11/200 (5%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V+LVAVSK + A GQ IF ENK+QE KW + K D++ IG +Q+NKV
Sbjct: 18 VTLVAVSKTKPVSDLMEAYETGQRIFGENKIQEMTDKWEEMPK--DIEWHMIGHVQTNKV 75
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFV 146
+ +I V R K ++ + R + + IQ+ E K G+ + + K F
Sbjct: 76 KFMAPYVSLIHAVDRLKLIKEVNKQAEANDRVIDILIQIKIAREDSKFGMAVQDAVKLFE 135
Query: 147 ILCRQKY-QLNVEGLMCIPPAMGNPK---PHFYLLSEIA---RE-CKLTKLSMGMTRDFE 198
+ Y +NV GLM + N F LL + RE LT LS GM+ D++
Sbjct: 136 ENTLENYPHVNVVGLMGMATFTDNQDQITAEFELLEGLFLRFRESANLTILSSGMSGDYK 195
Query: 199 LAIASGATSVRIGSGIFGER 218
LAI G+T +R+GS IFG R
Sbjct: 196 LAIDKGSTMIRVGSSIFGAR 215
>gi|317508842|ref|ZP_07966483.1| alanine racemase domain-containing protein [Segniliparus rugosus
ATCC BAA-974]
gi|316252866|gb|EFV12295.1| alanine racemase domain-containing protein [Segniliparus rugosus
ATCC BAA-974]
Length = 234
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 7/224 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L ++++ + A R V+LV V+K + + G F E++ QEA+
Sbjct: 7 LAERLASVREQVAEACARAGRDAREVTLVVVTKFFPASDAALLYELGCREFGESRDQEAR 66
Query: 63 KKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RFL 120
K L V+ IG +Q NK I S V+++V + + + ++ + L
Sbjct: 67 AKVAELGDSVPGVRWHMIGQIQRNKAKSIASWAHVVQSVDEARLVAAFEKAVSERGGQPL 126
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +QV+ + ++SG +P L ++GLM IPP +P + L+ +
Sbjct: 127 DVLVQVSLDGDGRRSGALPEDVPALADQIAASEHLRLQGLMAIPPLAADPAQAYERLARL 186
Query: 181 -----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
A T LS GM+ DF AIA+G++ VR+G+ I G RP
Sbjct: 187 HDALKADHPSATTLSAGMSGDFATAIAAGSSCVRVGTAILGARP 230
>gi|271964379|ref|YP_003338575.1| alanine racemase domain-containing protein [Streptosporangium
roseum DSM 43021]
gi|270507554|gb|ACZ85832.1| alanine racemase domain protein [Streptosporangium roseum DSM
43021]
Length = 234
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 10/205 (4%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK--EWDVQLRF 78
A R ++ ++L+AVSK + +R+ + G EN+ QEA K +R+ D+ F
Sbjct: 28 AGRAREELTLIAVSKTYPASDVRLLAALGVTDVGENRDQEASVK---VRECAGLDLTWHF 84
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK + DV+ +V R + + LS E ++ R + +QV + + G
Sbjct: 85 IGQLQTNKARSVAGYADVVHSVDRPRLVTALSQEAVRAGREITCLVQVALDGDPGRGGAR 144
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK-----LSMGM 193
P + + G+M + P P F L EIA+ + +S GM
Sbjct: 145 PADVAALAEALAVAPGIRLGGVMAVAPLGEEPGRAFARLREIAQVMRDAHPGADVISAGM 204
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D AIA+GAT +R+G+ + G R
Sbjct: 205 SGDMSEAIANGATHLRVGTALLGRR 229
>gi|170065074|ref|XP_001867791.1| proline synthetase co-transcribed protein-like protein [Culex
quinquefasciatus]
gi|167882213|gb|EDS45596.1| proline synthetase co-transcribed protein-like protein [Culex
quinquefasciatus]
Length = 337
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/217 (36%), Positives = 107/217 (49%), Gaps = 24/217 (11%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNK 86
LVAVSK I S GQ F EN +QE +K L D+Q FIG LQSNK
Sbjct: 119 LVAVSKTKPVDLILDGYSIGQRDFGENYVQELIEKAHDAKILEHCKDIQWHFIGHLQSNK 178
Query: 87 VSEIVSLFDV--IETVSREKTASLL--SLEMIK----QSRFLPVYIQVNTGYEIQKSGIM 138
+++IV+L ++ IETV K A L + E +K S L V IQ+NT E +K+G
Sbjct: 179 INKIVNLPNLYMIETVHNAKLAENLNKAWEKVKADKPDSSKLNVLIQINTSGEDEKNGTN 238
Query: 139 PNQTKDFVILCRQKY-QLNVEGLMCI----PPAMGNPKPHFYLL--------SEIARECK 185
P + + +K LN G+M I P P F L S ++ +
Sbjct: 239 PAEAVNLYRFVTEKCPNLNCHGVMTIGRFGHDYSTGPNPDFIELMKCHADICSTFEKDPE 298
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++SMGM+ DF AI G+T VR+GS IFG R +T
Sbjct: 299 EVQVSMGMSDDFVQAIEMGSTIVRVGSSIFGARAKKT 335
>gi|307637721|gb|ADN80171.1| hypothetical protein hp908_1048 [Helicobacter pylori 908]
gi|325996324|gb|ADZ51729.1| Hypothetical protein hp2018_1015 [Helicobacter pylori 2018]
gi|325997913|gb|ADZ50121.1| hypothetical protein hp2017_1011 [Helicobacter pylori 2017]
Length = 222
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 105/209 (50%), Gaps = 33/209 (15%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---EWDVQLRFIGSLQS 84
V +VAVSK + I+ +C Q F ENK+Q+ K K L EW IGSLQ
Sbjct: 28 VKIVAVSKNASLEAIQHYYNCSQRAFGENKVQDLKTKMHSLEHLPLEW----HMIGSLQE 83
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR-----------FLPVYIQVNTGYEIQ 133
NK++ ++SL K A L SL+ +K + L +QVN+ YE
Sbjct: 84 NKINALLSL----------KPALLHSLDSLKLALKIEKRCETLGVTLNALLQVNSAYEES 133
Query: 134 KSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECK-LTK 188
KSG++P + + + + +L ++GLMCI + K F ++ + K +
Sbjct: 134 KSGVVPEEALEIYSQISETCKRLKLKGLMCIGAHTDDEKKIEKSFITTKKLFDQIKNASV 193
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGE 217
LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 194 LSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|281346889|gb|EFB22473.1| hypothetical protein PANDA_005479 [Ailuropoda melanoleuca]
Length = 273
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 127/243 (52%), Gaps = 28/243 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A S GQ F EN
Sbjct: 11 LGIGFALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQRTFGEN 68
Query: 57 KLQEA-KKKWIP--LRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSL 111
+QE +K P L +++ FIG LQ V++++++ ++ +ETV K A ++
Sbjct: 69 YVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLIAVPNLFMLETVDSVKLADKVNS 128
Query: 112 EMIKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAMG 168
K+ L V +QVNT E K G++P++T V K L GLM I + G
Sbjct: 129 SWQKKDSPEKLKVMVQVNTSGEESKHGLLPSETVAVVEHINTKCPSLEFVGLMTIG-SFG 187
Query: 169 N-----PKPHFYLLSEIARE--CKLT------KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ P P F +L + E KL +LSMGM+ DF+ AI G+T+VR+GS IF
Sbjct: 188 HDLSQGPNPDFQVLLSLREELCAKLNVPTDQVELSMGMSADFQHAIEVGSTNVRVGSTIF 247
Query: 216 GER 218
GER
Sbjct: 248 GER 250
>gi|149742615|ref|XP_001492309.1| PREDICTED: similar to Proline synthetase co-transcribed bacterial
homolog protein [Equus caballus]
Length = 275
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 127/243 (52%), Gaps = 28/243 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A S GQ F EN
Sbjct: 11 LGVGFALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQRTFGEN 68
Query: 57 KLQEA-KKKWIP--LRKEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSL 111
+QE +K P L +++ FIG LQ V++++++ ++ETV K A ++
Sbjct: 69 YVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETVDSVKLADKVNS 128
Query: 112 EMIKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAMG 168
K+ L + +Q+NT E K G++P++T V + K L GLM I + G
Sbjct: 129 SWQKKGSPERLKIMVQINTSGEESKHGLLPSETVATVEHIKAKCPSLEFVGLMTIG-SFG 187
Query: 169 N-----PKPHFYLLSEIARE-CK-------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ P P F +L + E CK +LSMGM+ DF+ AI G+T+VRIGS IF
Sbjct: 188 HDLSQGPNPDFQVLLSLREELCKKLSIPTEQVELSMGMSLDFQHAIEVGSTNVRIGSTIF 247
Query: 216 GER 218
GER
Sbjct: 248 GER 250
>gi|119946661|ref|YP_944341.1| alanine racemase domain-containing protein [Psychromonas ingrahamii
37]
gi|119865265|gb|ABM04742.1| alanine racemase domain protein [Psychromonas ingrahamii 37]
Length = 232
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 109/229 (47%), Gaps = 12/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ K++ +Q I +A A R D + L+AVSK I+ A G F EN +QE+
Sbjct: 3 NISKKIKNVEQTIIQAAQRAGRNADQIQLLAVSKTKPVALIKEAYLAGLRHFGENYVQES 62
Query: 62 KKKWIPLRKEWDVQ----LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+K ++ + D + FIG LQSNK + FD +++V R K A L+ +
Sbjct: 63 IEKIQQIKLDTDFEQAVFWYFIGPLQSNKTRPVAENFDWVQSVERLKIAQRLNDQRPDHL 122
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
L V +QVN E KSG Q + +L + G+M IP + + F
Sbjct: 123 PKLNVCLQVNISGEQSKSGTTLLQVIELASQVNNLPRLTLRGIMAIPEKTDDQLRLEKQF 182
Query: 175 YLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L I ++ LSMGM+ D E AIA G+T VRIG+ IFG R
Sbjct: 183 NELHNIYLHLQQLYPQVDTLSMGMSGDLEKAIACGSTMVRIGTDIFGSR 231
>gi|158301843|ref|XP_321478.4| AGAP001621-PA [Anopheles gambiae str. PEST]
gi|157012667|gb|EAA00912.4| AGAP001621-PA [Anopheles gambiae str. PEST]
Length = 268
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 108/217 (49%), Gaps = 31/217 (14%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR---KEWDVQLRFIGSLQSNK 86
L+AVSK I A S GQ F EN +QE +K R D++ FIG LQSNK
Sbjct: 48 LIAVSKTKPVDLILNAYSVGQRDFGENYVQELVEKANDARILEHCQDIRWHFIGHLQSNK 107
Query: 87 VSEIVSL--FDVIETVSREKTASLLS-------LEMIKQSRFLPVYIQVNTGYEIQKSGI 137
++++++L +I+TV K A L+ E ++ + L V +Q+NT E +K+G+
Sbjct: 108 INKVINLPNLHMIQTVHSIKLAEGLNKAWEKVKAENAEKKQQLNVLVQINTSGEDEKNGV 167
Query: 138 MPNQTKDFVILCRQKY----QLNVEGLMCI----PPAMGNPKPHFYLL--------SEIA 181
P +D V L R LN EG+M I P P F L S
Sbjct: 168 QP---EDAVGLFRYVLDKCPNLNCEGVMTIGRFGHDYTTGPNPDFGTLMKCQQDICSTFE 224
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R+ ++SMGM+ DF AI +G+T VR+GS IFG R
Sbjct: 225 RDPAELQVSMGMSDDFVQAIEAGSTIVRVGSSIFGAR 261
>gi|303258028|ref|ZP_07344037.1| pyridoxal phosphate enzyme, YggS family [Burkholderiales bacterium
1_1_47]
gi|330999444|ref|ZP_08323158.1| pyridoxal phosphate enzyme, YggS family [Parasutterella
excrementihominis YIT 11859]
gi|302859371|gb|EFL82453.1| pyridoxal phosphate enzyme, YggS family [Burkholderiales bacterium
1_1_47]
gi|329574870|gb|EGG56429.1| pyridoxal phosphate enzyme, YggS family [Parasutterella
excrementihominis YIT 11859]
Length = 241
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 100/229 (43%), Gaps = 12/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + + KQ + + + R SV L+ VSK + A+ CG F EN +QE
Sbjct: 7 GLEERYKRVKQSLADDEMRFGREPGSVFLLPVSKTFGINALEEAVKCGMRAFGENYVQEG 66
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K +K + ++ FIG LQSNK + FD ++TV R K A LS +
Sbjct: 67 CEKIEYFKKQHPDLEITWHFIGHLQSNKTRPVAEHFDWVQTVDRLKIAQRLSEQRPADMP 126
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN------PKP 172
L V I+V+ E KSG P L + G+M IP P
Sbjct: 127 PLNVLIEVHISDEESKSGCQPADVPALAQAITLLPNLKLRGIMAIPAPSDTEEGKKAPLK 186
Query: 173 HFYLLSEIARE---CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
Y + R+ + LSMGM+ D A+ G+T VR+GS IFG R
Sbjct: 187 EMYAIFLHLRDELNFDIDTLSMGMSSDMAEAVECGSTMVRVGSAIFGPR 235
>gi|156538527|ref|XP_001607241.1| PREDICTED: similar to proline synthetase co-transcribed
bacterial-like protein [Nasonia vitripennis]
Length = 247
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 113/245 (46%), Gaps = 28/245 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ + LQ + KI A AKR + LVAVSK ++ + A GQ F EN
Sbjct: 2 VDIATNLQAIRDKI--VAASAKRALEYKYFEPQLVAVSKFHPAEAVITAYEAGQKHFGEN 59
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSL 111
+ E K L K D++ FIG LQ + V+++ V+ ++ETV EK A+ L
Sbjct: 60 YVNELADKANSSDILEKCKDIRWHFIGHLQKSNVNKLLKVANLHIVETVDSEKIATALDS 119
Query: 112 EMIK----QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIP-- 164
K L + +QVNT E KSG V +K L GLM I
Sbjct: 120 AWPKFRKSDDAKLKIMVQVNTSREEAKSGCEVENASSMVKYIFEKCPNLEFTGLMTIGEY 179
Query: 165 --PAMGNPKPHFYLLSEI-AREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGI 214
P P F L ++ A+ C K +LSMGM+ D+E AI G++ VR+G+ I
Sbjct: 180 GYDVSKGPNPDFLALKDVKAKVCEDLGLDTKKVELSMGMSTDYEHAIELGSSLVRVGTAI 239
Query: 215 FGERP 219
FGERP
Sbjct: 240 FGERP 244
>gi|283782601|ref|YP_003373355.1| pyridoxal phosphate enzyme, YggS family [Gardnerella vaginalis
409-05]
gi|298253236|ref|ZP_06977028.1| TIM-barrel fold enzyme [Gardnerella vaginalis 5-1]
gi|283441773|gb|ADB14239.1| pyridoxal phosphate enzyme, YggS family [Gardnerella vaginalis
409-05]
gi|297532631|gb|EFH71517.1| TIM-barrel fold enzyme [Gardnerella vaginalis 5-1]
Length = 266
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 106/224 (47%), Gaps = 30/224 (13%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE----------- 71
R +SV+L+A +K D +I AL G + EN+ QE K LR E
Sbjct: 42 RKAESVTLLAATKTRDVGEIMAALKAGVRVIGENRPQEIVAKAEILRAEAAREGLSVGVN 101
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
++ L IG LQSNK+++++ L + I++V + A +S + V ++VN E
Sbjct: 102 GEIPLYLIGQLQSNKINKVLPLANGIQSVDGIELAQKISARAQNLGLCVDVMLEVNVSGE 161
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAREC---- 184
KSG P + D LN+ G M + + + + F L EI R+C
Sbjct: 162 ATKSGCAPERAIDEAFAISSLPALNLHGFMTLGARVDDETIVRSGFAKLREI-RDCVSKQ 220
Query: 185 ----------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
KL +LSMGM+ DF AIA G+T VRIGS IFG R
Sbjct: 221 LVQDYDGSSVKL-ELSMGMSGDFAWAIAEGSTMVRIGSAIFGPR 263
>gi|303321047|ref|XP_003070518.1| hypothetical protein CPC735_062460 [Coccidioides posadasii C735
delta SOWgp]
gi|240110214|gb|EER28373.1| hypothetical protein CPC735_062460 [Coccidioides posadasii C735
delta SOWgp]
gi|320036044|gb|EFW17984.1| alanine racemase [Coccidioides posadasii str. Silveira]
Length = 280
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 117/246 (47%), Gaps = 57/246 (23%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVAL---SCGQVIFAENKLQE--AKKKWIPLRKEWDVQ 75
A P SV LVAVSK+ + I +AL + F EN LQE K K +P W
Sbjct: 36 ASVPGSSVRLVAVSKLKPASDI-LALYNPPTSHLHFGENYLQELLEKSKILPPEIRW--- 91
Query: 76 LRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLLSL---EMIKQ----------SRF 119
FIG LQSNK ++ V +E+V +K A+LL E +K SR
Sbjct: 92 -HFIGGLQSNKCVTLARDVRGLWAVESVDTQKKATLLDKGWGERLKNHSAQQQQQEQSRA 150
Query: 120 LP----VYIQVNTGYEIQKSGIMPNQTKDFVILCR----QKYQLNVEGLMCI-------- 163
P V++QVNT E KSG+ P+Q V LCR Q +L +EGLM I
Sbjct: 151 EPERLRVFVQVNTSGEESKSGVEPSQA---VELCRFIREQCPRLKLEGLMTIGAIARSKA 207
Query: 164 -PPAMGNPKPHFYLLSE----IARECKLT-----KLSMGMTRDFELAIASGATSVRIGSG 213
P N F L E I +E L +LSMGM+ DFE AIA G+ VR+GS
Sbjct: 208 TTPETQNED--FDCLRETRDRICQELGLEGEEKLELSMGMSEDFEGAIAMGSNEVRVGST 265
Query: 214 IFGERP 219
IFG RP
Sbjct: 266 IFGARP 271
>gi|195108629|ref|XP_001998895.1| GI23376 [Drosophila mojavensis]
gi|193915489|gb|EDW14356.1| GI23376 [Drosophila mojavensis]
Length = 255
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 123/240 (51%), Gaps = 30/240 (12%)
Query: 7 LQVFKQKIENSAILAKRPKDSVS----LVAVSKMVDSKKIRVALSCGQVIFAENKLQE-A 61
LQ ++IE ++L RP++ + LVAVSK + I A + GQ F EN +QE
Sbjct: 15 LQHVLKRIE--SVLQSRPQEINTPKPLLVAVSKTKPVECIIEAYNAGQRHFGENYVQELV 72
Query: 62 KKKWIP--LRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQ- 116
+K P L + D++ IG LQSNK+++++ L ++ I+TV EK A+ + K+
Sbjct: 73 EKSQHPDILAQCPDIKWHLIGHLQSNKINKVLKLPNLYMIQTVDSEKLANGIDAAWAKRQ 132
Query: 117 ---SRFLPVYIQVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMG---- 168
+ L V +QVNT E KSG+ + + + L G+M I A G
Sbjct: 133 PEPTEPLRVLVQVNTSGEDVKSGVDASAAPSLYQYISDNLKHLKPVGIMTIG-AYGFDYS 191
Query: 169 -NPKPHFYLLSEIARE-CKLTKL-------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
P P F L ++ RE CK L SMGM+ D++ AI G+T VR+G+ IFG RP
Sbjct: 192 NGPNPDFVALLQVQREICKANSLPADAVQVSMGMSNDYDRAIEMGSTIVRVGTAIFGHRP 251
>gi|154509371|ref|ZP_02045013.1| hypothetical protein ACTODO_01902 [Actinomyces odontolyticus ATCC
17982]
gi|153799005|gb|EDN81425.1| hypothetical protein ACTODO_01902 [Actinomyces odontolyticus ATCC
17982]
Length = 232
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 14/179 (7%)
Query: 51 VIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS 110
++ N++QEA+ +R+ ++ IG LQSNK+++ ++ D IE++ AS +
Sbjct: 55 ILLGHNRVQEARATAEAIREVPGARIHLIGPLQSNKINQALACVDAIESLDSPALASKID 114
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAM 167
+ + LPV+++VN E K G P+ + L + G M + P
Sbjct: 115 ---ARATGTLPVFVEVNVSGETTKHGCAPSDVAALIDAVEASAHLQLAGFMTVGLNSPVE 171
Query: 168 GNPKPHFYLLSEIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + L I E LSMGM+RD E AIA GAT VR+G+ +FG R
Sbjct: 172 ADVRAAYAQLRGIRDEAAARLGINESDLALSMGMSRDLEWAIAEGATIVRLGTAVFGAR 230
>gi|329767996|ref|ZP_08259507.1| YggS family pyridoxal phosphate enzyme [Gemella haemolysans M341]
gi|328838481|gb|EGF88089.1| YggS family pyridoxal phosphate enzyme [Gemella haemolysans M341]
Length = 225
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 110/230 (47%), Gaps = 23/230 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ- 59
M++ + ++I + R D V L+AV+K V ++ A+ FAEN+ Q
Sbjct: 1 MNVRENFETITKEIAETCEKVGRNADEVKLIAVTKYVTDARVEEAIEAKITDFAENRPQN 60
Query: 60 --EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K K+ K W IGSLQ+ KV ++++ D + R+ A + K+
Sbjct: 61 YVERKSKYSD--KAW----HLIGSLQTRKVRDVINEVDYFHALDRDSLAKEIEKRAEKE- 113
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
+ ++QVN E K G+ ++T DF+ Q ++ V GLM + P + + + F
Sbjct: 114 --INCFVQVNVSGEESKHGLTADETVDFIKSLEQYSKIKVVGLMTMAPFVDDEDVLRNCF 171
Query: 175 YLLSEIARECKLTKL--------SMGMTRDFELAIASGATSVRIGSGIFG 216
L ++ E K +L SMGM+ D++ AI GAT +R+G+ + G
Sbjct: 172 RKLRQLRDEVKELELPYAPCEFLSMGMSNDYKTAIEEGATHIRVGTALVG 221
>gi|281424386|ref|ZP_06255299.1| pyridoxal phosphate enzyme, YggS family [Prevotella oris F0302]
gi|281401655|gb|EFB32486.1| pyridoxal phosphate enzyme, YggS family [Prevotella oris F0302]
Length = 224
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 103/219 (47%), Gaps = 27/219 (12%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+L PKD V LVA+SK + I A + GQ IF E+ QE K K L K D+Q F
Sbjct: 12 VLGNLPKD-VRLVAISKYHPCEYIEAAYAEGQRIFGESHEQELKLKVEKLPK--DIQWHF 68
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NKV I +IE V K ++ K +R + V ++++ E K G+
Sbjct: 69 IGHLQTNKVKYIAPYISMIEAVDSMKLLKEINKHANKHNRIIKVLLELHIAEEETKYGLT 128
Query: 139 PNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNP-----------------KPHFYLLSE 179
P+ ++ + R + + GLM + N K H++ S+
Sbjct: 129 PDACRELLAEGEWRTLDHVQICGLMMMASNTDNQDQIAGEFETAARFFNEIKTHYFADSD 188
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E S GM+ D++ AI G+T VR+G+ IFG R
Sbjct: 189 AFKE-----RSWGMSHDYKTAICHGSTMVRVGTTIFGPR 222
>gi|15612051|ref|NP_223703.1| hypothetical protein jhp0986 [Helicobacter pylori J99]
gi|11136004|sp|Q9ZKF2|Y395_HELPJ RecName: Full=UPF0001 protein jhp_0986
gi|4155573|gb|AAD06567.1| putative [Helicobacter pylori J99]
Length = 222
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 115/218 (52%), Gaps = 22/218 (10%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-- 70
KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K K L
Sbjct: 14 KIEKARIAYSR-HHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKIKMHSLEHLP 72
Query: 71 -EWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV----YI 124
EW IGSLQ NK++ ++SL ++ ++ K L+L++ K+ L V +
Sbjct: 73 LEW----HMIGSLQENKINALLSLKPALLHSLDSLK----LALKIEKRCEILGVNLNALL 124
Query: 125 QVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
QVN+ YE KSG++P + + + + +L ++GLMCI + + F ++
Sbjct: 125 QVNSAYEESKSGVVPEEALETYSQISETCKRLKLKGLMCIGAHTDDETKIEKSFTTTKKL 184
Query: 181 ARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 185 FDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|261749299|ref|YP_003256984.1| hypothetical protein BPLAN_213 [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497391|gb|ACX83841.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 219
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 14/205 (6%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
PK S+ ++AVSK + I G F EN +QE +K+ L K D++ IG +Q
Sbjct: 16 PK-SIKILAVSKNQNISSIERLYQIGHRDFGENYVQEMIQKYQKLPK--DIRWHMIGVIQ 72
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NK+ IV +I ++ + + +++ E K +R + +Q+ EI K+GI NQ
Sbjct: 73 KNKLKSIVPFIHLIHSIQKIEHLQIINKEAFKHNRVIKCLLQIKICNEINKAGI-TNQEA 131
Query: 144 DFVI---LCRQKYQLNVEGLMCIPPAMGNP---KPHFY----LLSEIARECKLTKLSMGM 193
D ++ + + + GLM + G+ + FY L +E R+ + LSMGM
Sbjct: 132 DNIMNNNIYHHMKNVKIIGLMGMASLHGSTQKIRQEFYSLKKLYNEYQRKYQHHILSMGM 191
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D+ +AI G+T +R+G+ +FG+R
Sbjct: 192 SNDYPIAIEYGSTHIRLGTSLFGKR 216
>gi|19703896|ref|NP_603458.1| proline synthetase associated protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|19714060|gb|AAL94757.1| Proline synthetase associated protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 223
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 107/202 (52%), Gaps = 13/202 (6%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD--VQLRFIGSLQ 83
+ V LVAV+K + I L GQ I ENK+Q K K I KE + ++ FIG+LQ
Sbjct: 22 EKVKLVAVTKYSSVEDIEKFLETGQNICGENKVQVIKDK-IEYFKEKNKKIKWHFIGNLQ 80
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NKV I+ D+I +V++ A ++ + + S+ + V +++N E K G ++ K
Sbjct: 81 KNKVKYIIDDVDLIHSVNKLSLAQEINKKAEQSSKIMDVLLEINVYGEESKQGYSLDELK 140
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR----------ECKLTKLSMGM 193
+I + LN+ G+M + P + K + SE+ + LT+LSMGM
Sbjct: 141 CDIIELQNLKNLNIIGVMTMAPFTDDEKILRMVFSELRKIKDELNKEYFNNNLTELSMGM 200
Query: 194 TRDFELAIASGATSVRIGSGIF 215
+ D+++A+ G+T +R+G+ IF
Sbjct: 201 SNDYKIALQEGSTFIRVGTKIF 222
>gi|325571370|ref|ZP_08146870.1| cell division protein YlmE [Enterococcus casseliflavus ATCC 12755]
gi|325155846|gb|EGC68042.1| cell division protein YlmE [Enterococcus casseliflavus ATCC 12755]
Length = 223
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 108/225 (48%), Gaps = 16/225 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q+I++S L R V L AV+K VD++ R L G AEN++++
Sbjct: 2 ISENLHKIQQEIQDSCALVSRNTSEVCLTAVTKSVDTETTRELLENGVRDCAENRVEKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF-LP 121
+K L DV+ FIG+LQ KV +++ D + K L+ E+ K++ +
Sbjct: 62 EKKAALTDYPDVRWHFIGNLQRRKVKSVINEIDFFHALDSIK----LAQEIQKRAEHPIN 117
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+++VN E K GI + F+ ++ V GLM + P + + E+
Sbjct: 118 CFVEVNVSQEATKQGIFVEEVVAFIEALASFDKIRVVGLMTMAPLTASKDEQHQIFKELK 177
Query: 182 R------ECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIF 215
R + LT + SMGM+ DF +AI GAT +R+G+ +F
Sbjct: 178 RIQQQIADLHLTHAPCLETSMGMSNDFPIAIQEGATFIRVGTALF 222
>gi|314978481|gb|EFT22575.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL072PA2]
gi|315088867|gb|EFT60843.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL072PA1]
Length = 198
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 90/195 (46%), Gaps = 21/195 (10%)
Query: 45 ALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGSLQSNKVSEIVSLFDVIET 99
A G +F ENK+Q+A K + EW + IG LQ+NK + +
Sbjct: 5 AYRAGYRLFGENKVQDALAKSELMDANHPGLEWSI----IGGLQTNKAKYVARFATEFQA 60
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ K A L + K+ R L V +QVN+ E QKSGI P + DF L+V G
Sbjct: 61 LDSLKIAHELDKRLQKEGRQLRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFNSLDVRG 120
Query: 160 LMCIPPAMGNPKP-----------HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSV 208
LM + + + L E ++LSMGM+ D E+AIA G+T V
Sbjct: 121 LMTVALNSSDQRAVADCFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQV 180
Query: 209 RIGSGIFGER-PCQT 222
RIG+ IFG R P +T
Sbjct: 181 RIGTDIFGARDPART 195
>gi|255015185|ref|ZP_05287311.1| hypothetical protein B2_14854 [Bacteroides sp. 2_1_7]
gi|262381194|ref|ZP_06074332.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. 2_1_33B]
gi|262296371|gb|EEY84301.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. 2_1_33B]
Length = 222
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 108/210 (51%), Gaps = 26/210 (12%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSN 85
V+LVAVSK + + A + GQ +F E++ QE AK+K +P EW FIG LQSN
Sbjct: 18 VTLVAVSKFHPVEALWEAYNAGQRVFGESRAQELSAKQKVLPEDIEW----HFIGPLQSN 73
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV +I +I ++ K + ++ + K R + V ++++ E K G+ P + K+
Sbjct: 74 KVKDIAPFIHLIHSIDSLKLLAEVNKQAKKYDRTIRVLLEIHVAQEESKHGLSPEECKE- 132
Query: 146 VILCRQK-----YQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLT---------K 188
L R + + + GLM + + + F + ++ E K T +
Sbjct: 133 --LLRDESLAEFQHIRICGLMGMATNTDDTGLIREEFRKIHDLFIELKETLCKDNVDFKE 190
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+SMGM+ D+ +AI G+T +R+G+ IFGER
Sbjct: 191 ISMGMSHDYPIAIQEGSTLIRVGTSIFGER 220
>gi|254525563|ref|ZP_05137615.1| pyridoxal phosphate enzyme, YggS family [Prochlorococcus marinus
str. MIT 9202]
gi|221536987|gb|EEE39440.1| pyridoxal phosphate enzyme, YggS family [Prochlorococcus marinus
str. MIT 9202]
Length = 210
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 109/199 (54%), Gaps = 11/199 (5%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+V+++AVSK S++I+ + GQ F E+K QEA +K + L+ + FIG +QSNK
Sbjct: 16 NVNILAVSKGFKSQEIKTIQNIGQNDFGESKFQEAYEKQLILKDLKQINWHFIGRIQSNK 75
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
+ +IV F I +V + +S ++ ++ + +QV + K G P +F+
Sbjct: 76 IRKIVQNFKYIHSVDSFEKLQKISNISREEEKYPSIMLQVKFSDDPTKGGFNP----EFL 131
Query: 147 ILCRQKYQ----LNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTKLSMGMTRDFEL 199
IL ++ Q +++ GLM I P + K + L + +A +L SMGM+ D+E
Sbjct: 132 ILKWREIQELKNISLTGLMTINPKGLSSKENSGLFKKCRVLADSLQLPDCSMGMSSDWEE 191
Query: 200 AIASGATSVRIGSGIFGER 218
AI +G+T +R+GS IFG R
Sbjct: 192 AIDAGSTWLRLGSLIFGGR 210
>gi|88809280|ref|ZP_01124789.1| hypothetical protein WH7805_06291 [Synechococcus sp. WH 7805]
gi|88787222|gb|EAR18380.1| hypothetical protein WH7805_06291 [Synechococcus sp. WH 7805]
Length = 216
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 98/198 (49%), Gaps = 11/198 (5%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V L+AVSK + IR ++CGQ+ F E+++QEA K LR ++ FIG LQ+NKV
Sbjct: 19 VKLLAVSKGHPADAIRDLVACGQLDFGESRVQEALPKQDALRDLPQIRWHFIGRLQANKV 78
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
+V F I ++ A S +++ + +QV + K G +D
Sbjct: 79 RAVVKAFSWIHSIDSLALAQRASRIALEEQQLPTALLQVKLRDDPAKGGWEIEALQDAWP 138
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK-------LTKLSMGMTRDFELA 200
+ L + GLM + P MG SE+ REC+ L SMGM+ D+ A
Sbjct: 139 ELQTLQGLQISGLMTMAP-MGVAAEDR---SELFRECRELANSLGLQHCSMGMSGDWHEA 194
Query: 201 IASGATSVRIGSGIFGER 218
A+GAT VR+GS +FG R
Sbjct: 195 AAAGATWVRLGSVLFGPR 212
>gi|301123513|ref|XP_002909483.1| proline synthetase co-transcribed bacterial protein [Phytophthora
infestans T30-4]
gi|262100245|gb|EEY58297.1| proline synthetase co-transcribed bacterial protein [Phytophthora
infestans T30-4]
Length = 234
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 119/235 (50%), Gaps = 24/235 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + K+ A+ K +LVAVSK + ++ A Q F EN +QE
Sbjct: 1 MAVAKNLLAVRAKVA-GAVAKTTWKQQCTLVAVSKTKPLEDLQEAYEADQRHFGENYIQE 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNK----VSEIVSLFDVIETVSREKTASLLSLEMIK- 115
+K PL D++ +IG +QSNK V ++ +LF V+ETV K A+ L+ +
Sbjct: 60 LTQK-APLLPA-DIKWHYIGHVQSNKAKPLVRDVPNLF-VVETVDSIKIANALNKASGEF 116
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQT----KDFVILCRQKYQLNVEGLMCIPPAMGNPK 171
++ L V +QVNT E QKSGI + + + V C LN+ GLM I
Sbjct: 117 RTEKLNVMVQVNTSEEEQKSGIDTDGSVELARHIVASCEH---LNLTGLMTIGRYGDTTS 173
Query: 172 PHFYLL----SEIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L ++A T+ LSMGM+ DFELAI+ G+T VR+GS IFG R
Sbjct: 174 ECFDRLVACRKKVAEAIGKTETELALSMGMSGDFELAISCGSTHVRVGSTIFGAR 228
>gi|326577686|gb|EGE27562.1| putative alanine racemase [Moraxella catarrhalis O35E]
Length = 236
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 93/197 (47%), Gaps = 13/197 (6%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
L+AVSK I+ GQ F EN LQEA K I + + +IGS+Q NK +
Sbjct: 42 LIAVSKTKPVAMIQTLFHQGQQDFGENYLQEALGK-ISQLSQLPIIWHYIGSIQRNKTRD 100
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
I FD + T+ RE A L+ E + L V IQ+N E KSG P + +
Sbjct: 101 IAKHFDWVHTLEREIIAQRLN-EQRAGMQPLNVLIQINIDDESSKSGCKPTELPTLIEQI 159
Query: 150 RQKYQLNVEGLMCIP-----PAMGNPKPHFYLLSEIARECKL---TKLSMGMTRDFELAI 201
LN+ G+M IP A K L +AR L +SMGM+ D A+
Sbjct: 160 INYKNLNLRGVMVIPSQQTVDAFARTK---VLFDAMARRFDLPNWDTISMGMSGDMTQAV 216
Query: 202 ASGATSVRIGSGIFGER 218
G+T VR+G+ IFGER
Sbjct: 217 VHGSTMVRVGTAIFGER 233
>gi|237744987|ref|ZP_04575468.1| proline synthetase associated protein [Fusobacterium sp. 7_1]
gi|229432216|gb|EEO42428.1| proline synthetase associated protein [Fusobacterium sp. 7_1]
Length = 223
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 107/202 (52%), Gaps = 13/202 (6%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD--VQLRFIGSLQ 83
+ V LVAV+K + I L GQ I ENK+Q K K I KE + ++ FIG+LQ
Sbjct: 22 EKVKLVAVTKYSSVEDIEEFLGTGQDICGENKVQVIKDK-IEYFKEKNKKIKWHFIGNLQ 80
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NKV I+ D+I +V++ A ++ + + S+ + V +++N E K G ++ K
Sbjct: 81 KNKVKYIIDDVDLIHSVNKLSLAQEINKKAEQSSKIMDVLLEINVYGEESKQGYSLDELK 140
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR----------ECKLTKLSMGM 193
+I + LN+ G+M + P + K + SE+ + LT+LSMGM
Sbjct: 141 CDIIELQNLKNLNIIGVMTMAPFTDDEKILRMVFSELRKIRDELNKEYFNNNLTELSMGM 200
Query: 194 TRDFELAIASGATSVRIGSGIF 215
+ D+++A+ G+T +R+G+ IF
Sbjct: 201 SNDYKIALQEGSTFIRVGTKIF 222
>gi|329960818|ref|ZP_08299124.1| pyridoxal phosphate enzyme, YggS family [Bacteroides fluxus YIT
12057]
gi|328532419|gb|EGF59220.1| pyridoxal phosphate enzyme, YggS family [Bacteroides fluxus YIT
12057]
Length = 221
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 105/214 (49%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+L++ P + V LVAVSK ++ I A GQ +F E+K+QE K+ L K D++ F
Sbjct: 9 VLSELP-EGVRLVAVSKFHPNEAIEEAYRAGQRVFGESKVQEMTAKYESLPK--DIEWHF 65
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK+ IV +I V K ++ + K R + +Q++ E K G
Sbjct: 66 IGHLQTNKIKYIVPYVALIHGVDSYKLLVEINRQAAKMGRTVNCLLQLHIAREETKFGFS 125
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNP---KPHFYLL---------SEIAREC 184
+ ++ + K +V GLM + N K F L S A E
Sbjct: 126 FEECREMLASGEWKDLAHVRICGLMGMATNTDNTEQIKAEFCSLDSFFQEVKSSWFAHEE 185
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AI +G+T +R+GS IFGER
Sbjct: 186 SFRELSMGMSHDYHEAIDAGSTLIRVGSRIFGER 219
>gi|308063841|gb|ADO05728.1| hypothetical protein HPSAT_05040 [Helicobacter pylori Sat464]
Length = 192
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 107/207 (51%), Gaps = 35/207 (16%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---EWDVQLRFIGSLQSNKV 87
+AVSK + I+ +C Q F ENK+Q+ K K L EW IGSLQ NK+
Sbjct: 1 MAVSKNASLEAIQNYYNCSQRAFGENKVQDLKIKMHSLEHLPLEW----HMIGSLQENKI 56
Query: 88 SEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV----YIQVNTGYEIQKSGIMPNQT 142
+ ++SL ++ ++ K L+L++ K+ L V +QVN+ YE KSG+MP +T
Sbjct: 57 NALLSLKPALLHSLDSLK----LALKIEKRCEILGVNLNALLQVNSAYEESKSGVMPEET 112
Query: 143 KD-FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK-----------LS 190
+ + + +L ++GLMCI + K EI + TK LS
Sbjct: 113 LEIYSQISETCKRLKLKGLMCIGTHADDEK-------EIEKSFITTKKLFDRLKNASVLS 165
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGE 217
MGM+ DFELAIA GA +RIGS +F E
Sbjct: 166 MGMSDDFELAIACGANLLRIGSFLFKE 192
>gi|300854251|ref|YP_003779235.1| hypothetical protein CLJU_c10650 [Clostridium ljungdahlii DSM
13528]
gi|300434366|gb|ADK14133.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
Length = 243
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 99/202 (49%), Gaps = 12/202 (5%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+V+LVAVSK + I+ A G F ENK+QE K L + D++ IG LQ NK
Sbjct: 39 NVTLVAVSKTKPIEDIQKAYDAGIRDFGENKVQELTNKIPNLPQ--DIRWHLIGHLQRNK 96
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V IV +I ++ + + L Q IQ+N G E K+G+ + +D +
Sbjct: 97 VKYIVGKVYLIHSLDSIRLLNELEKHYKDQKLIANTLIQINIGLEESKTGLPLEELEDLL 156
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLSEIARECK--------LTKLSMGMTRD 196
C + V+GLM + P K +F L I K + LSMGMT D
Sbjct: 157 KACENCTNVKVKGLMAVIPKGDEESCKNYFQKLKSIFDGLKKREFNNISMNILSMGMTHD 216
Query: 197 FELAIASGATSVRIGSGIFGER 218
+++AI GAT VRIG GIFG+R
Sbjct: 217 YKIAIKEGATLVRIGEGIFGKR 238
>gi|256379757|ref|YP_003103417.1| alanine racemase domain protein [Actinosynnema mirum DSM 43827]
gi|255924060|gb|ACU39571.1| alanine racemase domain protein [Actinosynnema mirum DSM 43827]
Length = 231
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 97/218 (44%), Gaps = 6/218 (2%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + +I + A R V+L+AV+K + +R+ G FAENK QEA+ K
Sbjct: 10 NLAEVRARIAKACETADRDPAEVTLLAVTKTFPASDVRLLHGLGLRDFAENKDQEARAKV 69
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L + D R +G LQ NK +++ D I++V + L K L V IQ
Sbjct: 70 AEL-GDLDANWRMVGRLQRNKARSVLTWADRIDSVDSARLVDALVEAAAKNGVHLDVLIQ 128
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
V+ + + G D + +L + G+M + P P F LL +
Sbjct: 129 VSIDGDAARGGCPVPDLPDLAARIGRSSELRLRGVMAVAPLGRYPGEAFALLKGAVTRLR 188
Query: 186 -----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
T +S GM+ D E AIA G+T VR+G+ + G R
Sbjct: 189 DDHPDATVISAGMSGDLEDAIAWGSTCVRVGTALLGSR 226
>gi|226226802|ref|YP_002760908.1| hypothetical protein GAU_1396 [Gemmatimonas aurantiaca T-27]
gi|226089993|dbj|BAH38438.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length = 224
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 97/204 (47%), Gaps = 21/204 (10%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW----IPLRKEWDVQLRFIGSLQ 83
V+LVAV+K + A + G + ENK+QEA+ K +P+R W IG LQ
Sbjct: 28 VTLVAVTKTHGPDAVEAAYAAGVLDVGENKVQEAEGKMAQVAVPVR--W----HLIGHLQ 81
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NK + FD++ ++ E+ A+ L E +K +R L V +QVN E K G+
Sbjct: 82 RNKARSALR-FDLVHSMDSERLAAALHDEAVKAARSLDVLLQVNVSGEDSKGGVALADVP 140
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK---------LSMGMT 194
L V G+M + P + + AR ++ LSMGM+
Sbjct: 141 ALADRLHALGTLRVRGVMTMAP-FEAAEATLRTVFAGARTARVALQQAGHPAEWLSMGMS 199
Query: 195 RDFELAIASGATSVRIGSGIFGER 218
D+E+A+ GAT VR+G+ +FG R
Sbjct: 200 GDYEIAVEEGATHVRLGTVLFGSR 223
>gi|313764511|gb|EFS35875.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL013PA1]
gi|313772106|gb|EFS38072.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL074PA1]
gi|313792198|gb|EFS40299.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL110PA1]
gi|313801851|gb|EFS43085.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL110PA2]
gi|313807460|gb|EFS45947.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL087PA2]
gi|313809970|gb|EFS47691.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL083PA1]
gi|313812998|gb|EFS50712.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL025PA1]
gi|313818505|gb|EFS56219.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL046PA2]
gi|313820271|gb|EFS57985.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL036PA1]
gi|313822920|gb|EFS60634.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL036PA2]
gi|313825148|gb|EFS62862.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL063PA1]
gi|313827719|gb|EFS65433.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL063PA2]
gi|313830299|gb|EFS68013.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL007PA1]
gi|313833673|gb|EFS71387.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL056PA1]
gi|313838675|gb|EFS76389.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL086PA1]
gi|314915505|gb|EFS79336.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL005PA4]
gi|314918210|gb|EFS82041.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL050PA1]
gi|314920025|gb|EFS83856.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL050PA3]
gi|314925158|gb|EFS88989.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL036PA3]
gi|314932039|gb|EFS95870.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL067PA1]
gi|314955909|gb|EFT00309.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL027PA1]
gi|314958221|gb|EFT02324.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL002PA1]
gi|314960058|gb|EFT04160.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL002PA2]
gi|314962857|gb|EFT06957.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL082PA1]
gi|314967775|gb|EFT11874.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL037PA1]
gi|314973304|gb|EFT17400.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL053PA1]
gi|314975982|gb|EFT20077.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL045PA1]
gi|314983999|gb|EFT28091.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL005PA1]
gi|315078072|gb|EFT50123.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL053PA2]
gi|315080700|gb|EFT52676.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL078PA1]
gi|315085713|gb|EFT57689.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL002PA3]
gi|315096219|gb|EFT68195.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL038PA1]
gi|315101163|gb|EFT73139.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL046PA1]
gi|315105439|gb|EFT77415.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL030PA1]
gi|315108384|gb|EFT80360.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL030PA2]
gi|327326131|gb|EGE67921.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL096PA2]
gi|327331994|gb|EGE73731.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL096PA3]
gi|327443196|gb|EGE89850.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL013PA2]
gi|327445981|gb|EGE92635.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL043PA2]
gi|327448039|gb|EGE94693.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL043PA1]
gi|327450839|gb|EGE97493.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL087PA3]
gi|327453084|gb|EGE99738.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL092PA1]
gi|327453815|gb|EGF00470.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL083PA2]
gi|328754258|gb|EGF67874.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL087PA1]
gi|328754491|gb|EGF68107.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL025PA2]
gi|328760647|gb|EGF74214.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL099PA1]
Length = 198
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 90/195 (46%), Gaps = 21/195 (10%)
Query: 45 ALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGSLQSNKVSEIVSLFDVIET 99
A G +F ENK+Q+A K + EW + IG LQ+NK + +
Sbjct: 5 AYRAGYRLFGENKVQDALAKSELMDANHPGLEWSI----IGGLQTNKAKYVARFATEFQA 60
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ K A L + K+ R L V +QVN+ E QKSGI P + DF L+V G
Sbjct: 61 LDSLKIAHELDKRLQKEGRQLRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRG 120
Query: 160 LMCIPPAMGNPKP-----------HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSV 208
LM + + + L E ++LSMGM+ D E+AIA G+T V
Sbjct: 121 LMTVALNSSDQRAVADCFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQV 180
Query: 209 RIGSGIFGER-PCQT 222
RIG+ IFG R P +T
Sbjct: 181 RIGTDIFGARDPART 195
>gi|157412807|ref|YP_001483673.1| TIM-barrel fold family protein [Prochlorococcus marinus str. MIT
9215]
gi|157387382|gb|ABV50087.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
str. MIT 9215]
Length = 211
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 109/199 (54%), Gaps = 11/199 (5%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+V+++AVSK S++I+ + GQ F E+K QEA +K + L+ + FIG +QSNK
Sbjct: 16 NVNILAVSKGFKSQEIKTIQNIGQNDFGESKFQEAYEKQLILKDLKQINWHFIGRIQSNK 75
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
+ +IV F I +V + +S ++ ++ + +QV + K G P +F+
Sbjct: 76 IRKIVQNFKYIHSVDSFEKLQKISNISREEEKYPSIMLQVKFSDDPTKGGFNP----EFL 131
Query: 147 ILCRQKYQ----LNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTKLSMGMTRDFEL 199
IL ++ Q +++ GLM I P + K + L + +A +L SMGM+ D+E
Sbjct: 132 ILKWREIQELENISLTGLMTINPKGLSSKENSGLFKKCRTLADTLQLPDCSMGMSSDWEE 191
Query: 200 AIASGATSVRIGSGIFGER 218
AI +G+T +R+GS IFG R
Sbjct: 192 AIDAGSTWLRLGSLIFGGR 210
>gi|256026886|ref|ZP_05440720.1| proline synthetase associated protein [Fusobacterium sp. D11]
gi|289764878|ref|ZP_06524256.1| proline synthetase associated protein [Fusobacterium sp. D11]
gi|289716433|gb|EFD80445.1| proline synthetase associated protein [Fusobacterium sp. D11]
Length = 223
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 107/202 (52%), Gaps = 13/202 (6%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD--VQLRFIGSLQ 83
+ V LVAV+K + I L GQ I ENK+Q K K I KE + ++ FIG+LQ
Sbjct: 22 EKVKLVAVTKYSSVEDIEEFLETGQDICGENKVQVIKDK-IEYFKEKNKKIKWHFIGNLQ 80
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NKV I+ D+I +V++ A ++ + + S+ + V +++N E K G ++ K
Sbjct: 81 KNKVKYIIDDVDLIHSVNKLSLAQEINKKAEQSSKIMDVLLEINVYGEESKQGYSLDELK 140
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR----------ECKLTKLSMGM 193
+I + LN+ G+M + P + K + SE+ + LT+LSMGM
Sbjct: 141 CDIIKLQNLKNLNIIGVMTMAPFTDDEKILRMVFSELRKIRDELNKEYFNNSLTELSMGM 200
Query: 194 TRDFELAIASGATSVRIGSGIF 215
+ D+++A+ G+T +R+G+ IF
Sbjct: 201 SNDYKIALQEGSTFIRVGTKIF 222
>gi|311272381|ref|XP_003133417.1| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like isoform 2 [Sus scrofa]
Length = 275
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 128/244 (52%), Gaps = 30/244 (12%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP++ LVAVSK + + A + GQ IF EN
Sbjct: 11 LGIGFALRAVNERVQQA--VARRPRELPAIQPRLVAVSKTKPADMVIEAYNHGQRIFGEN 68
Query: 57 KLQEA-KKKWIP--LRKEWDVQLRFIGSLQS---NKVSEIVSLFDVIETVSREKTASLLS 110
+QE +K P L +++ FIG LQ NK+ + +LF ++ETV K A ++
Sbjct: 69 YVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLMAVPNLF-MLETVDSMKLADKVN 127
Query: 111 LEMIKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAM 167
K+ L V +QVNT E K G++P++T V + K L GLM I +
Sbjct: 128 SSWQKKGSPERLKVMVQVNTSGEESKHGLLPSETVAMVEHVKAKCPSLEFVGLMTIG-SF 186
Query: 168 GN-----PKPHFYLLSEIARE-CK-------LTKLSMGMTRDFELAIASGATSVRIGSGI 214
G+ P P F +L + E C+ +LSMGM+ DF+ AI G+T+VRIGS I
Sbjct: 187 GHDLSQGPNPDFQVLVSLREELCQKLHIPVDQVELSMGMSVDFQHAIEVGSTNVRIGSTI 246
Query: 215 FGER 218
FGER
Sbjct: 247 FGER 250
>gi|110798840|ref|YP_696537.1| hypothetical protein CPF_2108 [Clostridium perfringens ATCC 13124]
gi|168206092|ref|ZP_02632097.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens E
str. JGS1987]
gi|168210783|ref|ZP_02636408.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens B
str. ATCC 3626]
gi|168215212|ref|ZP_02640837.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens
CPE str. F4969]
gi|168215482|ref|ZP_02641107.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens
NCTC 8239]
gi|110673487|gb|ABG82474.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens
ATCC 13124]
gi|170662426|gb|EDT15109.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens E
str. JGS1987]
gi|170711154|gb|EDT23336.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens B
str. ATCC 3626]
gi|170713382|gb|EDT25564.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens
CPE str. F4969]
gi|182382413|gb|EDT79892.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens
NCTC 8239]
Length = 219
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 105/214 (49%), Gaps = 12/214 (5%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
EN ++ +V L+AVSK +++ A G F ENK+QE +K+ + DV
Sbjct: 5 ENLTKFTEKIPSNVQLIAVSKTRTIEEMEEAYEFGIRKFGENKVQEIIRKFDEFHQ--DV 62
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
+ IG LQ+NKV IV +I+++ K + K ++ IQVN G E QK
Sbjct: 63 EWHLIGHLQTNKVKYIVDKVHLIQSLDSIKLLKEIEKVYGKHNKIANTLIQVNIGREEQK 122
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY------LLSEIA----REC 184
GI+ + + + +NV G+M I P + Y L E+ +
Sbjct: 123 YGILEEELDELIEAIEACNNVNVLGIMTIIPKGTEEECRKYFSKTHKLFCELKEKKFKNI 182
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K+ LSMGM+ D+E+AI G+ VRIG GIFG+R
Sbjct: 183 KMDILSMGMSGDYEIAIEEGSNMVRIGQGIFGKR 216
>gi|314923046|gb|EFS86877.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL001PA1]
gi|314966818|gb|EFT10917.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL082PA2]
gi|315093262|gb|EFT65238.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL060PA1]
gi|315103480|gb|EFT75456.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL050PA2]
gi|327327644|gb|EGE69420.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL103PA1]
Length = 198
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 90/195 (46%), Gaps = 21/195 (10%)
Query: 45 ALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGSLQSNKVSEIVSLFDVIET 99
A G +F ENK+Q+A K + EW + IG LQ+NK + +
Sbjct: 5 AYRAGYRLFGENKVQDALAKSELMDDDHPGLEWSI----IGGLQTNKAKYVARFATEFQA 60
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ K A L + K+ R L V +QVN+ E QKSGI P + DF L+V G
Sbjct: 61 LDSLKIAHELDKRLQKEGRQLRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRG 120
Query: 160 LMCIPPAMGNPKP-----------HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSV 208
LM + + + L E ++LSMGM+ D E+AIA G+T V
Sbjct: 121 LMTVALNSSDQRAVADCFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQV 180
Query: 209 RIGSGIFGER-PCQT 222
RIG+ IFG R P +T
Sbjct: 181 RIGTDIFGTRDPVRT 195
>gi|260494764|ref|ZP_05814894.1| proline synthetase associated protein [Fusobacterium sp. 3_1_33]
gi|260197926|gb|EEW95443.1| proline synthetase associated protein [Fusobacterium sp. 3_1_33]
Length = 223
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 107/202 (52%), Gaps = 13/202 (6%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD--VQLRFIGSLQ 83
+ V LVAV+K + I L GQ I ENK+Q K K I KE + ++ FIG+LQ
Sbjct: 22 EKVKLVAVTKYSSVEDIEEFLETGQDICGENKVQVIKDK-IEYFKEKNKKIKWHFIGNLQ 80
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NKV I+ D+I +V++ A ++ + + S+ + V +++N E K G ++ K
Sbjct: 81 KNKVKYIIDDVDLIHSVNKLSLAQEINKKAEQSSKIMDVLLEINVYGEESKQGYSLDELK 140
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR----------ECKLTKLSMGM 193
+I + LN+ G+M + P + K + SE+ + LT+LSMGM
Sbjct: 141 CDIIELQNLKNLNIIGVMTMAPFTDDEKILRMVFSELRKIRDELNKEYFNNSLTELSMGM 200
Query: 194 TRDFELAIASGATSVRIGSGIF 215
+ D+++A+ G+T +R+G+ IF
Sbjct: 201 SNDYKIALQEGSTFIRVGTKIF 222
>gi|66524764|ref|XP_623518.1| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like [Apis mellifera]
Length = 248
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 109/216 (50%), Gaps = 30/216 (13%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW---IPLRKEWDVQLRFIGSLQSNK 86
LVAVSK+ + I A GQ F EN + E +K I L ++ FIG LQ NK
Sbjct: 33 LVAVSKLKPVELIVDAYKAGQRHFGENYVNELLEKGNDPIILETCTNIHWHFIGHLQRNK 92
Query: 87 VSEIVSLFD--VIETVSREKTASLLSLEMIK----QSRFLPVYIQVNTGYEIQKSG---- 136
V++++S+ + VIE++ EK AS ++ I ++ L V +QVNT E +K+G
Sbjct: 93 VNKLLSVPNLYVIESIDNEKLASAVNTSWINYRKDENLKLKVMVQVNTSKEQEKNGCEIT 152
Query: 137 -IMPNQTKDFVILCRQKYQLNVEGLMCIP----PAMGNPKPHFYLLSEIAR--------E 183
+ P + + C+ L GLM I P P F L E +
Sbjct: 153 NVCP-LVQHIIANCKN---LEFIGLMTIGMFGYDYSKEPNPDFLCLKECRENVSKQLDID 208
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
K +LSMGM+ D+E A+ G+T+VR+G+ IFGERP
Sbjct: 209 LKQIELSMGMSNDYEHAVELGSTNVRVGTAIFGERP 244
>gi|254469009|ref|ZP_05082415.1| conserved hypothetical protein TIGR00044 [beta proteobacterium
KB13]
gi|207087819|gb|EDZ65102.1| conserved hypothetical protein TIGR00044 [beta proteobacterium
KB13]
Length = 223
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 99/210 (47%), Gaps = 12/210 (5%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
I + +SL+AVSK +KI + G + F EN +QE K I + F
Sbjct: 15 IFEENHNRKISLIAVSKKQSIEKINYLIDYGHLDFGENYVQEGVDK-IKTISNPSLIWHF 73
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG +QSNK +I F+ + ++ R K + E + + IQ+N E KSGI
Sbjct: 74 IGPIQSNKTKQITEHFNWVHSIDRLKIYERIKNEANSLRKKINFLIQINISKENTKSGIN 133
Query: 139 PNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI-----ARECKLTK 188
N + + I Y L G+M IP N + F LL++ R +
Sbjct: 134 INDLDEILDGIDPSDDY-LRFRGIMAIPSNTSNINLLEKEFSLLNKAYISLKERFHTVDT 192
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D+ LA+ G+T +R+GS IFGER
Sbjct: 193 LSMGMSNDYHLAMDHGSTMIRVGSKIFGER 222
>gi|297243143|ref|ZP_06927081.1| TIM-barrel fold enzyme [Gardnerella vaginalis AMD]
gi|296889354|gb|EFH28088.1| TIM-barrel fold enzyme [Gardnerella vaginalis AMD]
Length = 266
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 107/224 (47%), Gaps = 30/224 (13%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-----------AKKKWIPLRKE 71
R +SV+L+A +K D +I AL G + EN+ QE A ++ + +
Sbjct: 42 RKAESVTLLAATKTRDVGEIMAALRAGVRVIGENRPQEIVAKAEILRAQAAREGLSVGVN 101
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
++ L IG LQSNK+++++ L + I++V + A +S V ++VN E
Sbjct: 102 GEIPLYLIGQLQSNKINKVLPLANGIQSVDGIELAQKISTRTQNLGLCTDVMLEVNVSGE 161
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEIAREC---- 184
KSG P + D + LN+ G M + + + K F L EI R+C
Sbjct: 162 ATKSGCAPERAIDEALAISSLPALNLRGFMTLGARVDDEKIVRSGFAKLREI-RDCVSEQ 220
Query: 185 ----------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
KL +LSMGM+ DF AIA G+T VRIGS IFG R
Sbjct: 221 LAQDYDGNSAKL-ELSMGMSGDFAWAIAEGSTMVRIGSAIFGPR 263
>gi|323140383|ref|ZP_08075313.1| pyridoxal phosphate enzyme, YggS family [Phascolarctobacterium sp.
YIT 12067]
gi|322415139|gb|EFY05928.1| pyridoxal phosphate enzyme, YggS family [Phascolarctobacterium sp.
YIT 12067]
Length = 233
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 105/208 (50%), Gaps = 24/208 (11%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE--WDVQLRFIGSLQ 83
D+V+LVAV+K + I + G EN++QEAK K L K W IG LQ
Sbjct: 29 DNVTLVAVTKNHPPEIITNIEALGIANVGENRVQEAKHKQEALGKHGYW----HLIGHLQ 84
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
+NK + V+LFD+IE+V E + + E + + + +Q+N +E QKSG+ +
Sbjct: 85 TNKARQAVALFDLIESVDSEHLLAAIDKEAERIGKVQDILLQLNIAHEEQKSGL---DKE 141
Query: 144 DFVILCRQ--KY-QLNVEGLMCIP----------PAMGNPKPHFYLLSEIARECKLTKLS 190
D++ L + +Y + + GLM I P F L + + + LS
Sbjct: 142 DYLALLPKLPEYKHVRLRGLMVIAQKCEDIEQTRPVFAAGYRAFARLKQQYPQADI--LS 199
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGM+ D+ +AI GA VR+G+ +FG+R
Sbjct: 200 MGMSNDYTVAIEEGANIVRVGTALFGQR 227
>gi|298377624|ref|ZP_06987576.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 3_1_19]
gi|298265643|gb|EFI07304.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 3_1_19]
Length = 222
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 108/210 (51%), Gaps = 26/210 (12%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSN 85
V+LVAVSK + + A + GQ +F E++ QE AK+K +P EW FIG LQSN
Sbjct: 18 VTLVAVSKFHPVEALWEAYNAGQRVFGESRAQELSAKQKVLPEDIEW----HFIGPLQSN 73
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV +I +I ++ K + ++ + K R + V ++++ E K G+ P + K+
Sbjct: 74 KVKDIAPFIHLIHSIDSLKLLAEVNKQAKKHDRTIRVLLEIHVAQEESKHGLSPEECKE- 132
Query: 146 VILCRQK-----YQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLT---------K 188
L R + + + GLM + + + F + ++ E K T +
Sbjct: 133 --LLRDESSAEFQHIRICGLMGMATNTDDTGLIREEFRNIHDLFIELKETLCKDNVDFKE 190
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+SMGM+ D+ +AI G++ +R+G+ IFGER
Sbjct: 191 ISMGMSHDYPIAIQEGSSLIRVGTSIFGER 220
>gi|16930823|ref|NP_473398.1| proline synthase co-transcribed bacterial homolog protein isoform a
[Mus musculus]
gi|12230502|sp|Q9Z2Y8|PROSC_MOUSE RecName: Full=Proline synthase co-transcribed bacterial homolog
protein
gi|4126980|dbj|BAA36843.1| Proline synthetase associated [Mus musculus]
gi|26328127|dbj|BAC27804.1| unnamed protein product [Mus musculus]
gi|148700851|gb|EDL32798.1| proline synthetase co-transcribed [Mus musculus]
Length = 274
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 124/243 (51%), Gaps = 28/243 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ S +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 11 LGVGFALRAVNERVQQS--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 68
Query: 57 KLQEA-KKKWIP--LRKEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSL 111
+QE +K P L +++ FIG LQ V++++++ ++ETV K A ++
Sbjct: 69 YVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETVDSVKLADKVNS 128
Query: 112 EMIKQSRFLP--VYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAMG 168
K+ P V +Q+NT E K G++P++T V + L GLM I + G
Sbjct: 129 SWQKKGPTEPLKVMVQINTSGEDSKHGLLPSETIAVVEHIKASCPSLEFVGLMTIG-SFG 187
Query: 169 N-----PKPHFYLLSEIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ P P F L + RE + +LSMGM+ DF+ AI G+T+VRIGS IF
Sbjct: 188 HDLSQGPNPDFQRLLTLRRELCEKLGIPVEQVELSMGMSMDFQHAIEVGSTNVRIGSTIF 247
Query: 216 GER 218
GER
Sbjct: 248 GER 250
>gi|256084107|ref|XP_002578274.1| proline synthetase associated protein [Schistosoma mansoni]
gi|238663640|emb|CAZ34512.1| proline synthetase associated protein, putative [Schistosoma
mansoni]
Length = 237
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 104/208 (50%), Gaps = 19/208 (9%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQE-AKKKWIP--LRKEWDVQLRFIGSLQSNK 86
LVAVSK + I A + GQ F ENK+ K + P + D++ FIG +QSNK
Sbjct: 28 LVAVSKEKPIQSIIEAYNFGQRHFGENKIVHLYDKSYAPELINSCPDIKWHFIGRIQSNK 87
Query: 87 VSEIVSLFDV--IETVSREKTASLL-SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
+ ++ + ++ +ETV A +L S + L + IQVNT E QK+GI P +
Sbjct: 88 IRKLAGVNNLYMVETVDSMDHAEILNSTWGLNHQIPLNIMIQVNTSGEPQKNGIKPTEVI 147
Query: 144 DFVILCRQKY-QLNVEGLMCIP----PAMGNPKPHF--------YLLSEIARECKLTKLS 190
+ K L V GLMCI P P F L S + + +LS
Sbjct: 148 NLYNQIEVKCPNLKVVGLMCIGQEGVDINSGPNPDFVKLVQCRELLASSLGKSPLDFELS 207
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGM+ DFE AI G+T+VRIG+ IFG+R
Sbjct: 208 MGMSHDFEQAIRLGSTNVRIGTAIFGQR 235
>gi|157150424|ref|YP_001449979.1| hypothetical protein SGO_0676 [Streptococcus gordonii str. Challis
substr. CH1]
gi|157075218|gb|ABV09901.1| conserved hypothetical protein TIGR00044 [Streptococcus gordonii
str. Challis substr. CH1]
Length = 223
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 18/223 (8%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
NK QVF + + A RP++SVS+VAV+K VDS + + G EN++ + +K
Sbjct: 6 NKYQVFAA-VAEATRKANRPENSVSIVAVTKYVDSSTAKELVKTGVKHIGENRVDKFLEK 64
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF-LPVY 123
+ LR E ++ IG+LQ KV E+++ D + K L+ E+ K++ + +
Sbjct: 65 YQYLRDE-ELTWHLIGTLQRRKVKEVINYVDYFHALDSLK----LAEEIEKRAEHTIKCF 119
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEI 180
+QVN E K G N+ + + + + + G+M + P + F E+
Sbjct: 120 LQVNVSGEESKHGFAVNEIEAVLPALEKLEHIEIVGIMTMAPIDAGEEDLEKIFQATHEL 179
Query: 181 ARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + +++SMGM+RDF AIA+G+T VRIG+ F
Sbjct: 180 QKKLQNKQITNMPFSEISMGMSRDFATAIANGSTFVRIGTSFF 222
>gi|145296115|ref|YP_001138936.1| hypothetical protein cgR_2035 [Corynebacterium glutamicum R]
gi|140846035|dbj|BAF55034.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 234
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+LQ + +I+ + RP+ SV L+ V+K + I++ G EN+ QEA+ K
Sbjct: 10 RLQQVQARIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQELGVTAVGENREQEARAKA 69
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL----SLEMIKQSRF-- 119
+ L D+ IG +QS K + I + +V EK A L +L + + R
Sbjct: 70 LELP---DMDFHMIGQIQSKKANSIARWSAAVHSVDSEKIAEALGRGVALALERGDRTSD 126
Query: 120 -LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY--- 175
LP +IQ++ + + G +Q L EGLMC+PP +P+ F
Sbjct: 127 ELPCFIQLSLDGDPSRGGTPLSQVTQLADCISDTTHLRFEGLMCVPPLGWDPEKAFSQAR 186
Query: 176 -LLSEIARECKLT-KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+LS + + + S GM+ D AI G+T VR+G+ I G RP
Sbjct: 187 DVLSGLEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRP 232
>gi|253682617|ref|ZP_04863414.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum D
str. 1873]
gi|253562329|gb|EES91781.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum D
str. 1873]
Length = 220
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 102/215 (47%), Gaps = 14/215 (6%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
EN + K + +L+AVSK K+++ A C F ENK+QE +K DV
Sbjct: 5 ENVYKIKKSIPEGTTLIAVSKTRSLKELQEAYECNIRDFGENKVQELIEKIDNFHN--DV 62
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
+ IG LQ+NKV IV +I ++ + + + IQ+N G + K
Sbjct: 63 RWHLIGHLQTNKVKYIVGKVHLIHSLDNIRLLKEIEKRYSMCHKVANALIQINIGRDPNK 122
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR-----------E 183
SG++ ++ + C + + ++G+M + P GN + E+
Sbjct: 123 SGVLKEDLQNLINECEKCKYVKIKGIMTVIPK-GNQDANREYFKEMKNIYDFLSKNNYNN 181
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K+ +SMGMT D+++A+ G+ VRIG GIFG+R
Sbjct: 182 IKMEFISMGMTGDYKIALEEGSNMVRIGEGIFGKR 216
>gi|237749781|ref|ZP_04580261.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
gi|229374646|gb|EEO25037.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
Length = 222
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 105/199 (52%), Gaps = 9/199 (4%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
KDS+ L+AVSK D +I+ A SCGQ+ F ENK+Q+ K L +++ FIG+LQ
Sbjct: 23 KDSIKLIAVSKYSDIDEIQQAFSCGQIAFGENKVQDLMAKSRSLSTH-NIEWHFIGTLQE 81
Query: 85 NKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQT 142
NK++ ++ + + ++ K A L ++++ + +QVN+ E KSG + +
Sbjct: 82 NKINMLIQIKPALLHSLHSLKLAHALQKRLMREDYKMKALLQVNSANEDSKSGFSLESAF 141
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPK--PHFYL----LSEIARECKLTKLSMGMTRD 196
++ + + + GLMC+ + +L L E + LSMGM+ D
Sbjct: 142 SSYLEILETCPNIELNGLMCMGANSDDKALIEKGFLQTQNLYERLKPYNANILSMGMSSD 201
Query: 197 FELAIASGATSVRIGSGIF 215
+E+AIA G+ +RIGS IF
Sbjct: 202 YEIAIACGSNHLRIGSSIF 220
>gi|257885183|ref|ZP_05664836.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257821035|gb|EEV48169.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
Length = 225
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 14/224 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + LQ KQ+I++S L R V+LVAV+K V+S + + G + AEN++ +
Sbjct: 2 IADNLQKIKQEIQDSCALVHRDPKEVTLVAVTKSVESAQAEELVRAGVMNCAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L +++ IG+LQ KV IV+ D + + A + + K+ L
Sbjct: 62 QKKQDLFDFPEIKWHLIGNLQRRKVKLIVNEIDYFHALDSLRLAEEIQKRLEKE---LSC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP-AMGNPKPH--FYLLSE 179
+I+VN E K GI P++ FV ++ V GLM + P + + H F L E
Sbjct: 119 FIEVNVSGEESKHGISPDELLPFVESLAACTKIKVVGLMTMAPKEASDEQIHKVFGTLKE 178
Query: 180 IAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ ++LSMGM++DF++AI GAT +R+G+ +F
Sbjct: 179 LRDLVQAKGYAHAPCSELSMGMSQDFQIAIEEGATFIRVGTALF 222
>gi|326802033|ref|YP_004319852.1| hypothetical protein Sph21_4672 [Sphingobacterium sp. 21]
gi|326552797|gb|ADZ81182.1| protein of unknown function UPF0001 [Sphingobacterium sp. 21]
Length = 221
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 26/217 (11%)
Query: 22 KRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFI 79
K+ DSV +LVAVSK +I+ A GQ F EN++QE + K+ L K D++ I
Sbjct: 11 KKETDSVGVTLVAVSKTKSVTEIQEAYDAGQRTFGENQVQELRDKYEVLPK--DIEWHMI 68
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G LQ+NKV + +I +V K ++ + K R + +Q+ E K G+
Sbjct: 69 GHLQTNKVKYLAPFIKLIHSVDSLKLLQEINKQASKHDRIIDCLLQIYIADEETKFGLAY 128
Query: 140 NQ------TKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL---------SEIA 181
++ + +F IL + + GLM I N K FY L S
Sbjct: 129 DEVIELLRSDEFSILK----NVRIVGLMGIATNTDNEKLIKEEFYELKTLFNGIKASFFR 184
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ +LSMGM+ D+++AI G+T +R+GS IFG R
Sbjct: 185 KDDAFKELSMGMSSDYKIAIEQGSTMIRLGSTIFGSR 221
>gi|146087566|ref|XP_001465860.1| hypothetical protein [Leishmania infantum JPCM5]
gi|134069960|emb|CAM68291.1| putative alanine racemase [Leishmania infantum JPCM5]
gi|322499304|emb|CBZ34378.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 245
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 110/213 (51%), Gaps = 30/213 (14%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSN 85
V+L+AVSK + + GQ +F EN +QE K K +P W FIG LQSN
Sbjct: 35 VTLIAVSKTKSPACLLNLYNLGQRVFGENYVQELGEKAKVLPEDTVW----HFIGHLQSN 90
Query: 86 KVSEI---VSLFDVIETVSREKTASLLS--LEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
KV E+ V VI+T+ E AS ++ + R L VYIQVNT E KSG P
Sbjct: 91 KVKELLEGVPNLRVIQTIDSENLASKVNEGCRKYRGGRPLEVYIQVNTSGEETKSGTEPG 150
Query: 141 QT-----KDFVILCRQKYQLNVEGLMCI--PPAMGNPKPHFYLLS----EIARECKLT-- 187
+ K V C L ++GLM I P P+ +F L+ ++A+ ++
Sbjct: 151 EATVALAKYIVDECPL---LRLKGLMTIGMPDYTSRPE-NFECLTKCREDVAQAVQMAPE 206
Query: 188 --KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AI G+T+VR+G+ IFG+R
Sbjct: 207 DLELSMGMSGDYVNAIRMGSTTVRVGTSIFGQR 239
>gi|313888289|ref|ZP_07821960.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845692|gb|EFR33082.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 236
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 100/211 (47%), Gaps = 22/211 (10%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR-----KEWDVQLRFIGS 81
V L+AVSK + I G F ENK+QE K R K ++ IG+
Sbjct: 26 DVKLIAVSKTHPVEMIDEFNKLGVKDFGENKVQELVSKIEDKRIEESLKNNELNFHLIGN 85
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQ+NKV I + +I+++ R K A + + +Q+N G E K GI ++
Sbjct: 86 LQTNKVKYIYNKVKLIQSLDRIKLAKEIDKRAKNDDIIVDCLVQINIGDEDSKFGIKYDE 145
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL----------LSEIAREC----KLT 187
T+DF+ + ++GLM I P N + F L EI+ + ++
Sbjct: 146 TEDFIYELLDYKNIKIKGLMAIAP---NTEDEFLLRKLFEKMNNKFEEISSKAYEGVEMK 202
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ DF+LAI G+ +R+GS +FG R
Sbjct: 203 YLSMGMSHDFKLAIEEGSNMIRVGSKLFGNR 233
>gi|69244709|ref|ZP_00602973.1| Protein of unknown function UPF0001 [Enterococcus faecium DO]
gi|257879371|ref|ZP_05659024.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257881763|ref|ZP_05661416.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257890197|ref|ZP_05669850.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257893525|ref|ZP_05673178.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|260558813|ref|ZP_05831002.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|261206523|ref|ZP_05921223.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289565433|ref|ZP_06445882.1| YggS family pyridoxal phosphate enzyme [Enterococcus faecium
D344SRF]
gi|293553190|ref|ZP_06673827.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
E1039]
gi|293560469|ref|ZP_06676961.1| conserved hypothetical protein [Enterococcus faecium E1162]
gi|293568295|ref|ZP_06679619.1| conserved hypothetical protein [Enterococcus faecium E1071]
gi|294614706|ref|ZP_06694608.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
E1636]
gi|294618996|ref|ZP_06698491.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
E1679]
gi|294621608|ref|ZP_06700773.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
U0317]
gi|314937866|ref|ZP_07845182.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133a04]
gi|314941357|ref|ZP_07848250.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133C]
gi|314950116|ref|ZP_07853402.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0082]
gi|314951343|ref|ZP_07854397.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133A]
gi|314992826|ref|ZP_07858227.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133B]
gi|314997986|ref|ZP_07862881.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133a01]
gi|68196300|gb|EAN10729.1| Protein of unknown function UPF0001 [Enterococcus faecium DO]
gi|257813599|gb|EEV42357.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257817421|gb|EEV44749.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257826557|gb|EEV53183.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257829904|gb|EEV56511.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|260075272|gb|EEW63585.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|260079233|gb|EEW66924.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289162762|gb|EFD10613.1| YggS family pyridoxal phosphate enzyme [Enterococcus faecium
D344SRF]
gi|291589007|gb|EFF20831.1| conserved hypothetical protein [Enterococcus faecium E1071]
gi|291592444|gb|EFF24051.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
E1636]
gi|291594657|gb|EFF26039.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
E1679]
gi|291598773|gb|EFF29825.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
U0317]
gi|291602600|gb|EFF32815.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
E1039]
gi|291605617|gb|EFF35059.1| conserved hypothetical protein [Enterococcus faecium E1162]
gi|313587998|gb|EFR66843.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133a01]
gi|313592630|gb|EFR71475.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133B]
gi|313596560|gb|EFR75405.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133A]
gi|313599780|gb|EFR78623.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133C]
gi|313642724|gb|EFS07304.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133a04]
gi|313643557|gb|EFS08137.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0082]
Length = 225
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 14/224 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + LQ KQ+I++S L R V+LVAV+K V+S + + G + AEN++ +
Sbjct: 2 IADNLQKIKQEIQDSCALVHRDPKEVTLVAVTKSVESAQAEELVRAGVMNCAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L +++ IG+LQ KV IV+ D + + A + + K+ L
Sbjct: 62 EKKQDLFDFPEIKWHLIGNLQRRKVKLIVNEIDYFHALDSLRLAEEIQKRLEKE---LSC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP-AMGNPKPH--FYLLSE 179
+I+VN E K GI P++ FV ++ V GLM + P + + H F L E
Sbjct: 119 FIEVNVSGEESKHGISPDELLPFVESLAACTKIKVVGLMTMAPKEASDEQIHKVFGTLKE 178
Query: 180 IAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ ++LSMGM++DF++AI GAT +R+G+ +F
Sbjct: 179 LRDLVQAKGYAHAPCSELSMGMSQDFQIAIEEGATFIRVGTALF 222
>gi|78778775|ref|YP_396887.1| hypothetical protein PMT9312_0390 [Prochlorococcus marinus str. MIT
9312]
gi|78712274|gb|ABB49451.1| Protein of unknown function UPF0001 [Prochlorococcus marinus str.
MIT 9312]
Length = 211
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 111/200 (55%), Gaps = 13/200 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+V+++AVSK S++I+ + GQ F E+K QEA +K + L+ ++ FIG +QSNK
Sbjct: 16 NVNILAVSKGFKSQEIKTIQNIGQNDFGESKFQEAFEKQLILKDLKKIKWHFIGRIQSNK 75
Query: 87 VSEIVSLFDVIETV-SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
+ +IV F I +V S EK + ++ ++ L + +QV + K G P D
Sbjct: 76 IRKIVQNFKYIHSVDSFEKLQKISNISDAEKKNPL-IMLQVKLSDDPTKGGFNP----DL 130
Query: 146 VILCRQKYQ----LNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTKLSMGMTRDFE 198
++L ++ Q + + GLM I P + K + L + +A +L SMGM+ D+E
Sbjct: 131 LVLKWREIQELKNITLTGLMTINPKGLSSKENTKLFKKCRSLADSLQLPDCSMGMSGDWE 190
Query: 199 LAIASGATSVRIGSGIFGER 218
AI +G+T VR+GS IFG+R
Sbjct: 191 EAIDAGSTWVRLGSLIFGDR 210
>gi|198275265|ref|ZP_03207796.1| hypothetical protein BACPLE_01424 [Bacteroides plebeius DSM 17135]
gi|198271848|gb|EDY96118.1| hypothetical protein BACPLE_01424 [Bacteroides plebeius DSM 17135]
Length = 222
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 100/209 (47%), Gaps = 24/209 (11%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
VSLVAVSK ++ I A GQ IF E+K QE KK L D+Q FIG LQ+NKV
Sbjct: 18 VSLVAVSKFHPNEAILAAYETGQRIFGESKEQELSKKQASLPA--DIQWHFIGHLQTNKV 75
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
I +I V K + + + K +R +P ++++ E K G ++ +
Sbjct: 76 KYIAPYIAMIHAVDSYKLLAEIDKQAAKCNRVIPCLLEIHIAEEESKYGFSFEACREMLE 135
Query: 148 LCRQKYQLNVEGLMCIPPAMG---NPKPHFYLLSEIA--------------RECKLTK-L 189
K +V CI MG N +++E ++C K +
Sbjct: 136 TTPWKELTHV----CISGVMGMATNTDDESQIINEFESLHRFFTELKATYFKDCDTFKEI 191
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMGM+ D+ LA+ +G+T VR+GS IFG+R
Sbjct: 192 SMGMSHDYMLAVQAGSTMVRVGSKIFGDR 220
>gi|307202202|gb|EFN81689.1| Proline synthetase co-transcribed bacterial-like protein protein
[Harpegnathos saltator]
Length = 248
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 110/215 (51%), Gaps = 28/215 (13%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQE-AKKKWIP--LRKEWDVQLRFIGSLQSNK 86
LVAVSK+ + I GQ F EN + E +K P L+ +++ FIG+LQ NK
Sbjct: 33 LVAVSKLQSVESILSVYKSGQTHFGENYVNELVEKASHPQILQYGTEIKWHFIGNLQRNK 92
Query: 87 VSEIVSLFD--VIETVSREKTASLLSLEMIK----QSRFLPVYIQVNTGYEIQKSGI--- 137
V++I+++ + +IETV E+ A++L+ +K L + +Q+NT E +K+G
Sbjct: 93 VNKILNVPNLYIIETVDNERLANMLNNLWVKFRKNDDTKLNIMVQINTSQEKEKNGCDMV 152
Query: 138 -MPNQTKDFVILCRQKYQLNVEGLMCIP----PAMGNPKPHFYLL--------SEIAREC 184
P K + C L GLM I P P F L +++ +
Sbjct: 153 EAPALVKHIINNCPN---LKFIGLMTIGMFGYDIANGPNPDFINLLKCRETICNKLEIDF 209
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
K +LSMGM+ D+E AI G+TSVR+GS IFG RP
Sbjct: 210 KNIELSMGMSNDYEHAIELGSTSVRVGSAIFGIRP 244
>gi|126661816|ref|ZP_01732815.1| hypothetical protein FBBAL38_00655 [Flavobacteria bacterium BAL38]
gi|126625195|gb|EAZ95884.1| hypothetical protein FBBAL38_00655 [Flavobacteria bacterium BAL38]
Length = 225
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 107/221 (48%), Gaps = 22/221 (9%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL 76
+ I ++ PK V+LVAVSK + A + GQ IF ENK+QE KW + K D++
Sbjct: 8 TEIKSQLPK-QVTLVAVSKTKPVADLMEAYNAGQRIFGENKIQEMTDKWEDMPK--DIEW 64
Query: 77 RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG 136
IG +Q+NKV + +I V K ++ + K +R + +QV E K G
Sbjct: 65 HMIGHVQTNKVKYMAPYVSLIHGVDSLKLLQEINKQAAKNNRVIDCLLQVYIAEEESKFG 124
Query: 137 IMPNQTKDFV--ILCRQKY------QLNVEGLMCIPPAMGNP---KPHFYLLSEI----- 180
+ + ++ + +L + + + GLM + N + F L I
Sbjct: 125 LDEQELEEMLNKLLDSARSDNKTLKNIRIVGLMGMATFTENKDQIEKEFKHLKTIFDKHK 184
Query: 181 ---ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
C+L LSMGM+ D++LAI+ G+T VRIGS IFG R
Sbjct: 185 TLNTEHCQLNTLSMGMSGDYQLAISCGSTMVRIGSSIFGSR 225
>gi|21672794|ref|NP_660861.1| hypothetical protein BUsg531 [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25009595|sp|Q8K929|Y531_BUCAP RecName: Full=UPF0001 protein BUsg_531
gi|21623443|gb|AAM68072.1| hypothetical 25.8 kDa protein [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 229
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 8/200 (4%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
P + ++AVSK KI++A+S G F EN +QE K L+K ++ FIG +Q
Sbjct: 25 PLKKIKIIAVSKNQGIDKIKLAISSGIHEFGENYVQEGIDKIQKLKKYQNIIWHFIGKVQ 84
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
SNK I FD +T+ REK A LL+ K+S + V +Q+N E+ K+GI K
Sbjct: 85 SNKTKIIAENFDWCQTIDREKIAILLNKYREKKSFPMNVLMQINISNEVTKNGICIKNYK 144
Query: 144 DFVILCRQKYQLNVEGLMCIPPA-------MGNPKPHFYLLSEIARECK-LTKLSMGMTR 195
LN G+M +P N K ++ +E+ +E + + LS+G +
Sbjct: 145 KLAKTISLMPNLNFRGIMMMPEVEKKMIKQNDNYKNGNFIFNELKKEYQSIDTLSLGTSF 204
Query: 196 DFELAIASGATSVRIGSGIF 215
D E A+ + +RIG IF
Sbjct: 205 DIENALLFHSNMIRIGRFIF 224
>gi|300087752|ref|YP_003758274.1| alanine racemase domain-containing protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527485|gb|ADJ25953.1| alanine racemase domain protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 221
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 104/223 (46%), Gaps = 22/223 (9%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK------ 62
+++ +N + K +V++ AV K +I AL G I A N +QEA+
Sbjct: 1 MYRHITKNIECIKKEIPSTVTIEAVVKKRSIPEITTALQSGVDIVAFNYVQEAREIIGCL 60
Query: 63 -KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K +IP + + IG LQ NKV++ LFD IET+ A L+ K +P
Sbjct: 61 NKSFIPFKSHY------IGHLQKNKVAKSTELFDFIETIDDTTLAQSLNNTCRKSGVIMP 114
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFY---- 175
V IQVN G E KSG P+ L + G+M + P + + +P F
Sbjct: 115 VLIQVNIGRESSKSGAWPDNVIQLAETISCLPNLCLRGIMTMGPEVPSIRLRPFFVETKT 174
Query: 176 LLSEIARECKLTK---LSMGMTRDFELAIASGATSVRIGSGIF 215
LL E+ C ++ LSMGM+ + LAI GA +R+G IF
Sbjct: 175 LLDELVSRCLVSGPEILSMGMSDSYMLAIEEGANFIRLGKAIF 217
>gi|237726241|ref|ZP_04556722.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|229434767|gb|EEO44844.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
Length = 222
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 110/214 (51%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+L++ P + V LVAVSK ++ + A + GQ IF E+ +QE +K+ L K D++ F
Sbjct: 10 VLSELPTE-VRLVAVSKFHPNEALEEAYAAGQRIFGESHVQEMTQKYETLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NKV + +I + K ++ + K R +P +Q++ E K G
Sbjct: 67 IGHLQTNKVKYMAPYVAMIHAIDSYKLLVEVNKQASKVHRVIPCLLQIHIAQEETKFGFS 126
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNP---KPHFYLLSEIARECK-------- 185
++ ++ + K NV G+M + + + K F L+ +E K
Sbjct: 127 FDECREMLDTGGWKDLKNVRLSGVMGMATNVDDDEQIKREFCSLNTFFKEIKQSYFSDSE 186
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++SMGM+ D+ LA+ +G+T VR+GS IFGER
Sbjct: 187 YFKEISMGMSHDYPLAVEAGSTLVRVGSKIFGER 220
>gi|314988183|gb|EFT32274.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL005PA2]
gi|314989986|gb|EFT34077.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL005PA3]
gi|315084372|gb|EFT56348.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL027PA2]
gi|328753527|gb|EGF67143.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL020PA1]
Length = 198
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 89/195 (45%), Gaps = 21/195 (10%)
Query: 45 ALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGSLQSNKVSEIVSLFDVIET 99
A G +F ENK+Q A K + EW + IG LQ+NK + +
Sbjct: 5 AYRAGYRLFGENKVQHALAKSELMDANHPGLEWSI----IGGLQTNKAKYVARFATEFQA 60
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ K A L + K+ R L V +QVN+ E QKSGI P + DF L+V G
Sbjct: 61 LDSLKIAHELDKRLQKEGRQLRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRG 120
Query: 160 LMCIPPAMGNPKP-----------HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSV 208
LM + + + L E ++LSMGM+ D E+AIA G+T V
Sbjct: 121 LMTVALNSSDQRAVADCFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQV 180
Query: 209 RIGSGIFGER-PCQT 222
RIG+ IFG R P +T
Sbjct: 181 RIGTDIFGARDPART 195
>gi|46447369|ref|YP_008734.1| hypothetical protein pc1735 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401010|emb|CAF24459.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 210
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 107/209 (51%), Gaps = 15/209 (7%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
+ P+D V+L+ VSK ++ G F EN++ EA K IP D+Q IG
Sbjct: 5 GRDPQD-VNLIVVSKNQPITVMQDVYQSGCRQFGENRVMEALAK-IPEMPR-DIQWHLIG 61
Query: 81 SLQSNKVSEIV-SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
+LQSNKV++I+ S +I +V A +S +++ + + +QVN E K G+
Sbjct: 62 TLQSNKVAKILNSSISLIHSVHSFSLAKKISEGSLQKQKITSILLQVNVSKEESKQGLTH 121
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLSEIARECK--------LTK 188
++ + + ++ L +EGLM I P +G + F L E+ + K
Sbjct: 122 DEWEKLLAPLQELSNLRIEGLMTIAPHTADLGYVRFCFRQLFELREKWKKQMNNPTYFKH 181
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGE 217
LSMGMT D+ +AI GAT +RIGSGIFG
Sbjct: 182 LSMGMTNDYLIAIEEGATLLRIGSGIFGH 210
>gi|88802794|ref|ZP_01118321.1| hypothetical protein PI23P_09390 [Polaribacter irgensii 23-P]
gi|88781652|gb|EAR12830.1| hypothetical protein PI23P_09390 [Polaribacter irgensii 23-P]
Length = 224
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 107/219 (48%), Gaps = 20/219 (9%)
Query: 16 NSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQ 75
N A + K ++V LVAVSK ++ A GQ +F ENK+QE +K+ L K D+Q
Sbjct: 6 NIAEIKKSIPENVILVAVSKTKPIADLQEAYDGGQRVFGENKVQEMAEKFDALPK--DIQ 63
Query: 76 LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKS 135
IG LQSNKV + ++I + + KT ++ + K R + +Q E K
Sbjct: 64 WHMIGHLQSNKVKYMAHFVNLIHGIDKLKTLQEINKQAKKHDRVISCLLQAKIAKEESKF 123
Query: 136 GIMPNQTKDFVILCRQKYQ----LNVEGLMCIPPAMGNPK---------PHFYLLSE--- 179
G+ + + IL +Q + + G M + N + +F+ L +
Sbjct: 124 GLSFEEIEH--ILKSPDFQELENIKIVGFMGMASFSDNQEQLNEEFASLKNFFELHKKNT 181
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
C+L LSMGM+ D+ LAI +G+T +R+GS IFG R
Sbjct: 182 STNNCQLEILSMGMSGDYPLAIKNGSTMIRLGSSIFGSR 220
>gi|189204762|ref|XP_001938716.1| alanine racemase family protein (ISS) [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985815|gb|EDU51303.1| alanine racemase family protein (ISS) [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 269
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 90/252 (35%), Positives = 120/252 (47%), Gaps = 48/252 (19%)
Query: 8 QVFKQKIENSAILAKR----PKDS--VSLVAVSKMVDSKKIRVAL----SCGQVIFAENK 57
Q KQ EN + ++ R KD+ V L+AVSK+ + I +AL F EN
Sbjct: 10 QRAKQLAENISTISSRIKAASKDNKQVRLIAVSKLKPANDI-LALHQQPDPTHTHFGENY 68
Query: 58 LQE--AKKKWIPLRKEWDVQLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLLS-- 110
+QE K K +P W IG LQSNK ++E + + +V EK A+ L
Sbjct: 69 VQELIEKSKLLPRTIRW----HMIGGLQSNKCKQLAEQIPNLWCVSSVDSEKKANELEKG 124
Query: 111 ----LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ----LNVEGLMC 162
LE + L V +QVNT E +KSG+ P+ D +ILCRQ + L + GLM
Sbjct: 125 RKALLEKDNSAEKLRVKVQVNTSGEKEKSGVEPS---DAIILCRQIIEKCPHLQLSGLMT 181
Query: 163 I-------PPAMGNPKPHFYLLSE----IARECKLTK----LSMGMTRDFELAIASGATS 207
I N F L E +A+E + LSMGM+ DFE AI G+
Sbjct: 182 IGAIARSRATTPENENEDFVALRETRDKVAKELGWEEGQLELSMGMSADFEGAIRMGSDE 241
Query: 208 VRIGSGIFGERP 219
VR+GS IFGERP
Sbjct: 242 VRVGSEIFGERP 253
>gi|299140885|ref|ZP_07034023.1| pyridoxal phosphate enzyme, YggS family [Prevotella oris C735]
gi|298577851|gb|EFI49719.1| pyridoxal phosphate enzyme, YggS family [Prevotella oris C735]
Length = 224
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 103/219 (47%), Gaps = 27/219 (12%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+L PKD V LVA+SK + I A + GQ IF E+ QE K K L K D+Q F
Sbjct: 12 VLGNLPKD-VRLVAISKYHPCEYIEAAYAEGQRIFGESHEQELKLKVEKLPK--DIQWHF 68
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NKV I +IE V K ++ K +R + V ++++ E K G+
Sbjct: 69 IGHLQTNKVKYIAPYISMIEAVDSMKLLKEINKHANKHNRIIKVLLELHIAEEETKYGLT 128
Query: 139 PNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNP-----------------KPHFYLLSE 179
P+ ++ + R + + GLM + N K H++ S+
Sbjct: 129 PDACRELLADGEWRTLDHVQICGLMMMASNTDNQDQIASEFETAARFFDEIKAHYFADSD 188
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ S GM+ D++ AI G+T VR+G+ IFG R
Sbjct: 189 AFKD-----RSWGMSHDYKTAICHGSTMVRVGTTIFGPR 222
>gi|152986073|ref|YP_001345889.1| hypothetical protein PSPA7_0494 [Pseudomonas aeruginosa PA7]
gi|150961231|gb|ABR83256.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
Length = 230
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 97/211 (45%), Gaps = 6/211 (2%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I +A A R +V L+AVSK + +R A + G F EN LQEA K L +
Sbjct: 14 RIREAAQAAGRDPATVGLLAVSKTKPAAAVREAHAAGLRDFGENYLQEALGKQAEL-ADL 72
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
+ FIG +QSNK I F + +V R K A LS + L + +QVN E
Sbjct: 73 SLNWHFIGPIQSNKTRPIAEHFQWVHSVDRLKIAQRLSEQRPAGLPPLNICLQVNVSGEA 132
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYL----LSEIARECKLT 187
KSG P + L + GLM IP P + H + L
Sbjct: 133 SKSGCAPEDLPALAEAVKLLPNLRLRGLMAIPEPTVERAAQHAAFARLRELLLGLNLGLD 192
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 193 TLSMGMSDDLEAAIAEGATWVRIGTALFGAR 223
>gi|315651406|ref|ZP_07904431.1| cell division protein YlmE [Eubacterium saburreum DSM 3986]
gi|315486365|gb|EFU76722.1| cell division protein YlmE [Eubacterium saburreum DSM 3986]
Length = 226
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 109/207 (52%), Gaps = 13/207 (6%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R + V+L+AVSK ++ I A G F ENK+QE +K L K D++ IG L
Sbjct: 22 RDINDVTLIAVSKTKPNELIMEAYEAGIRDFGENKVQELVRKCEELPK--DIRWHMIGHL 79
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q+NKV +++ +I ++ + A + E IK+ + +++N E K G + +
Sbjct: 80 QTNKVRQLLGNTVLIHSIDSIRLADTIDTEAIKKGIHVDGLLEINVAKEASKYGFVEEEL 139
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR-----------ECKLTKLSM 191
++ + L + L+++GLM I P + + + + + ++ + ++ LSM
Sbjct: 140 EEILPLFGRYKNLHIKGLMTIAPDVDDAEKNRKIFKKLKKLYVDINEKNYDNIEVKFLSM 199
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GMT D+ +A+ GA VR+G+GIFG+R
Sbjct: 200 GMTGDYTVAVEEGAGFVRVGTGIFGKR 226
>gi|225024179|ref|ZP_03713371.1| hypothetical protein EIKCOROL_01049 [Eikenella corrodens ATCC
23834]
gi|224943204|gb|EEG24413.1| hypothetical protein EIKCOROL_01049 [Eikenella corrodens ATCC
23834]
Length = 234
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 109/225 (48%), Gaps = 15/225 (6%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQEAKKK 64
L + +I +A A RP+ L+AVSK + +R+ Q F EN LQE ++K
Sbjct: 9 NLHAVRARIWAAAEAAGRPEPE--LIAVSKTFPAADVRLLCQKSAQRDFGENYLQEFEEK 66
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
L D+ IG +QSNK + TV REK A LS + + L V I
Sbjct: 67 SSELADIPDICWHIIGHIQSNKSRIAAERAHWVHTVDREKIARRLSDQRPETMPPLQVLI 126
Query: 125 QVNTGYEIQKSGIMPNQT--KDFVILCRQKYQLNVEGLMCIPPAMGNP----KPHFYLLS 178
+VN G E K G+ P + + +L + GLMC+ +G+ + F ++
Sbjct: 127 EVNIGGEDVKHGVPPQEETLSELAFQVASLPRLKLRGLMCV-ARLGSSEEELRQQFGRMN 185
Query: 179 EI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ A+ + LSMGM+ D E A+A GAT VRIGS IFG+R
Sbjct: 186 ELLQFLQAQGLDVDVLSMGMSDDLETAVACGATHVRIGSAIFGQR 230
>gi|262068235|ref|ZP_06027847.1| pyridoxal phosphate enzyme, YggS family [Fusobacterium
periodonticum ATCC 33693]
gi|291378103|gb|EFE85621.1| pyridoxal phosphate enzyme, YggS family [Fusobacterium
periodonticum ATCC 33693]
Length = 223
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 104/201 (51%), Gaps = 11/201 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR-KEWDVQLRFIGSLQS 84
+ V L+AV+K + I L GQ I ENK+Q K K + K DV+ FIG+LQ
Sbjct: 22 EKVKLIAVTKYSSVEDIEEFLKTGQNICGENKVQVVKDKIEYFKSKNTDVKWHFIGNLQK 81
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV I+ I +V++ A ++ + + + + + I++N E K G ++ K
Sbjct: 82 NKVKYIIDDVVAIHSVNKLSLAQEINKKAEQSGKTMDILIEINVYGEESKQGYSLDELKC 141
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR----------ECKLTKLSMGMT 194
+I + LN+ G+M + P + K + SE+ + + LT+LSMGM+
Sbjct: 142 DIIELKNLKNLNIIGVMTMAPFTDDEKILRMVFSELRKIKDELNKEYFDNNLTELSMGMS 201
Query: 195 RDFELAIASGATSVRIGSGIF 215
D+++A+ G+T +R+G+ IF
Sbjct: 202 NDYKIALQEGSTYIRVGTKIF 222
>gi|145340986|ref|XP_001415597.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575820|gb|ABO93889.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 237
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 104/213 (48%), Gaps = 30/213 (14%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+V LVAVSK ++++ G F EN +QE +K +P R D + FIG LQSNK
Sbjct: 29 AVRLVAVSKTKPVEQLKECYDAGHRDFGENYVQEMIEK-VP-RMPEDTRWHFIGHLQSNK 86
Query: 87 VS---EIVSLFDVIETVSREKTASLLSLEMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQ 141
E ++ETV K A+ L+ + + R L V +QVNT E K G+ P
Sbjct: 87 CKALLEACPRLAMLETVDSAKLANKLNA-AVPEGRVDALRVLVQVNTSGEASKHGVEPG- 144
Query: 142 TKDFVILCRQKY----QLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL----------- 186
D V L + +L GLM I KP + E R+C+
Sbjct: 145 --DCVTLAKHIVSECPRLKFAGLMTIGMPDYTSKPENF---ETLRKCREEVCAALGMSES 199
Query: 187 -TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ DFE AIA G+T+VR+GS IFG R
Sbjct: 200 ECELSMGMSGDFEAAIAMGSTNVRVGSTIFGAR 232
>gi|227550462|ref|ZP_03980511.1| alanine racemase domain protein [Enterococcus faecium TX1330]
gi|257888490|ref|ZP_05668143.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257897135|ref|ZP_05676788.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|257899133|ref|ZP_05678786.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|293377358|ref|ZP_06623562.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
PC4.1]
gi|227180363|gb|EEI61335.1| alanine racemase domain protein [Enterococcus faecium TX1330]
gi|257824544|gb|EEV51476.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257833700|gb|EEV60121.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|257837045|gb|EEV62119.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|292644050|gb|EFF62156.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
PC4.1]
Length = 225
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 112/224 (50%), Gaps = 14/224 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + LQ KQ+I++S L R V+LVAV+K V+S + + G + AEN++ +
Sbjct: 2 IADNLQKIKQEIQDSCALVHRDPKEVTLVAVTKSVESAQAEELVRAGVMNCAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L +++ IG+LQ KV IV+ D + + A + + K+ L
Sbjct: 62 QKKQDLFDFPEIKWHLIGNLQRRKVKLIVNEIDYFHALDSLRLAEEIQKRLEKE---LSC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP-AMGNPKPH--FYLLSE 179
+I+VN E K GI P++ FV ++ V GLM + P + + H F L E
Sbjct: 119 FIEVNVSGEESKHGISPDELLPFVESLAACTKIKVVGLMTMAPKEASDEQIHKVFGTLKE 178
Query: 180 IAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ +LSMGM++DF++AI GAT +R+G+ +F
Sbjct: 179 LRDLVQAKGYAHAPCNELSMGMSQDFQIAIEEGATFIRVGTALF 222
>gi|328696677|ref|XP_001943141.2| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like [Acyrthosiphon pisum]
gi|239791204|dbj|BAH72101.1| ACYPI009997 [Acyrthosiphon pisum]
Length = 278
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 119/235 (50%), Gaps = 26/235 (11%)
Query: 7 LQVFKQKIENSAILAKRPKDSVS--LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L +++IE + KR + +V LVAVSK + I GQ F EN +QE K
Sbjct: 41 LNDVRRRIE--VVAQKRKEGNVEPRLVAVSKTKPIEHIIGIYQKGQRYFGENYVQELITK 98
Query: 65 WIP---LRKEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLS---LEMIKQ 116
L K D++ FIG +Q NKVS+++ + VIET+ EK A+ ++ ++ K+
Sbjct: 99 SSDVELLEKCRDIKWHFIGHIQKNKVSKVLMVPGLHVIETIDSEKLANAVNDGWKKLNKE 158
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIP----PAMGNPK 171
S+ L + +QVNT E +K G+ + D +K L + GLM I P
Sbjct: 159 SK-LKIMVQVNTSNEKEKFGVATDTVVDLCKFIIEKCDHLELIGLMTIGQYGYDCSQGPN 217
Query: 172 PHFYLLSEIARE-CKLTKL-------SMGMTRDFELAIASGATSVRIGSGIFGER 218
P F L + R+ C KL SMGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 218 PDFLALIDCKRDVCDKLKLNPSEIELSMGMSDDFEQAIELGSTNVRVGSSIFGFR 272
>gi|254382588|ref|ZP_04997946.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194341491|gb|EDX22457.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 239
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 107/235 (45%), Gaps = 24/235 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I ++ A R +D V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAENLARVEERISSACAAAGRARDEVTLIVVTKTYPASDVRLLAELGVRHVAENRDQDAA 67
Query: 63 KKW-----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K +PL W F+G LQ+NKV + V+++V R K + LS
Sbjct: 68 PKAAACADLPL--GW----HFVGQLQTNKVRSVAGYAHVVQSVDRPKLVTSLSAAATGAG 121
Query: 118 RFLPVYIQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG----N 169
R L +Q+ E + G P Q + L L ++G+M + P G
Sbjct: 122 RELGCLVQIALDAESGGRGTRGGAAPEQLAELADLVAAAPGLRIDGVMTVAPLAGPYAGR 181
Query: 170 PKPHFYLLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ F L E+ A T +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 182 EQAAFERLVELSSSLRADHPAATMVSAGMSADLEQAVAAGATHVRVGTAVLGARP 236
>gi|189467061|ref|ZP_03015846.1| hypothetical protein BACINT_03444 [Bacteroides intestinalis DSM
17393]
gi|189435325|gb|EDV04310.1| hypothetical protein BACINT_03444 [Bacteroides intestinalis DSM
17393]
Length = 222
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 107/214 (50%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+L + P + V LVAVSK ++ I A GQ +F E+K+QE K+ L K D++ F
Sbjct: 10 VLNELP-EGVRLVAVSKFHPNEAIEEAYRSGQRVFGESKVQEMTAKYESLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK+ IV +I + K ++ + K + + +Q++ E K G
Sbjct: 67 IGHLQTNKIKYIVPYVALIHGIDSYKLLVEVNKQAEKAGKVVNCLLQLHIAEEETKFGFS 126
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPK---PHFYLLSEIARECK-------- 185
+ +D + K N++ GLM + + + F LS +E K
Sbjct: 127 FEECRDMLAEGEWKTLSNIQLCGLMGMATNTDDNEQIEKEFCSLSSFFKEVKDSWFADTE 186
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AIA+G+T +R+GS IFG+R
Sbjct: 187 AFRELSMGMSHDYHQAIAAGSTLIRVGSKIFGDR 220
>gi|257440008|ref|ZP_05615763.1| pyridoxal phosphate enzyme, YggS family [Faecalibacterium
prausnitzii A2-165]
gi|257197360|gb|EEU95644.1| pyridoxal phosphate enzyme, YggS family [Faecalibacterium
prausnitzii A2-165]
Length = 239
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 104/227 (45%), Gaps = 24/227 (10%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
++K+ +A A R V L A K ++ + + + +F EN +QE L
Sbjct: 15 AIREKMAAAAREAGRDPAEVQLCAACKTRTAETVAASAALPIDVFGENHVQE-------L 67
Query: 69 RKEWDVQ------LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+D + FIG LQ+NK+ +++ +I++V E + + E K V
Sbjct: 68 CANFDAGAYCGKPIHFIGHLQTNKIKKVLGRASLIQSVGSEHLLTAIEKEAAKAGIVQNV 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++VN G E KSG+ P + + + V+GLM IPP + + L+ +
Sbjct: 128 LLEVNIGGEESKSGVSPEALWPLLDAASAQEHIRVKGLMAIPPVNDDDAQNRRYLAAVHD 187
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGM+ D+E AI GAT VRIG+ I+GER
Sbjct: 188 LFVKAGERGYSNVEMQTLSMGMSGDYENAIREGATLVRIGTAIYGER 234
>gi|124025159|ref|YP_001014275.1| TIM-barrel fold family protein [Prochlorococcus marinus str.
NATL1A]
gi|123960227|gb|ABM75010.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
str. NATL1A]
Length = 213
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 104/205 (50%), Gaps = 9/205 (4%)
Query: 22 KRPKDS----VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
K+ KDS V+L+AVSK IR GQ+ F E++LQEA K I L ++
Sbjct: 10 KKIKDSIPLGVNLLAVSKGHKHDSIRKLYGYGQLDFGESRLQEAILKKIDLSDLTQLRWH 69
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
F+G+LQ NKV ++ FD I +V +S ++ + +++QV + K G
Sbjct: 70 FVGTLQKNKVRRVIKEFDFIHSVDSLPLLERISRISQEEQKSPNIFLQVKFIEDPNKGGF 129
Query: 138 MPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLTKLSMGM 193
+ + K + + K +N+ GLM IPP + N K F A L SMGM
Sbjct: 130 LKEELLKSWSNIISLK-NINLIGLMTIPPIVLNSFQRKDLFCECRNFANHLGLKDCSMGM 188
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D++ AI GAT +R+GS +FG+R
Sbjct: 189 SNDWQEAIQGGATWIRLGSLLFGKR 213
>gi|332825856|ref|XP_001169823.2| PREDICTED: proline synthase co-transcribed bacterial homolog
protein isoform 1 [Pan troglodytes]
Length = 310
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 46 LGVGCALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGYGQRTFGEN 103
Query: 57 KLQE-----AKKKWIPLRKEWDVQLRFIGSLQS---NKVSEIVSLFDVIETVSREKTASL 108
+QE + K + L E ++ FIG LQ NK+ + +LF ++ETV K A
Sbjct: 104 YVQELLEKASNPKILSLCPE--IKWHFIGHLQKQNVNKLMAVPNLF-MLETVDSVKLADK 160
Query: 109 LSLEMIKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPP 165
++ K+ L V +Q+NT E K G+ P++T V K L GLM I
Sbjct: 161 VNSSWQKKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIG- 219
Query: 166 AMGN-----PKPHFYLLSEIARE-CK-------LTKLSMGMTRDFELAIASGATSVRIGS 212
+ G+ P P F LL + E CK +LSMGM+ DF+ A+ G+T+VRIGS
Sbjct: 220 SFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGS 279
Query: 213 GIFGER 218
IFGER
Sbjct: 280 TIFGER 285
>gi|182626136|ref|ZP_02953896.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens D
str. JGS1721]
gi|177908573|gb|EDT71098.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens D
str. JGS1721]
Length = 219
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 105/214 (49%), Gaps = 12/214 (5%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
EN ++ +V L+AVSK +++ A G F ENK+QE +K+ + DV
Sbjct: 5 ENLTKFTEKIPSNVQLIAVSKTRTIEEMEEAYEFGIRKFGENKVQEIIRKFDEFYQ--DV 62
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
+ IG LQ+NKV IV +I+++ K + K ++ IQVN G E QK
Sbjct: 63 EWHLIGHLQTNKVKYIVDKVHLIQSLDSIKLLKEIEKVYGKHNKIANTLIQVNIGREEQK 122
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY------LLSEIA----REC 184
GI+ + + + +NV G+M I P + Y L E+ +
Sbjct: 123 YGILEEELDELIEAIEACNNVNVLGIMTIIPKGTEEECRKYFSKTHKLFCELKEKKFKNI 182
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K+ LSMGM+ D+E+AI G+ VRIG GIFG+R
Sbjct: 183 KMDILSMGMSGDYEIAIEEGSNMVRIGQGIFGKR 216
>gi|119179922|ref|XP_001241476.1| hypothetical protein CIMG_08639 [Coccidioides immitis RS]
Length = 268
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 116/246 (47%), Gaps = 57/246 (23%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVAL---SCGQVIFAENKLQE--AKKKWIPLRKEWDVQ 75
A P SV LVAVSK+ + I +AL + F EN LQE K K +P W
Sbjct: 24 ASVPGSSVRLVAVSKLKPASDI-LALYNPPTSHLHFGENYLQELLEKSKILPPEIRW--- 79
Query: 76 LRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLLSL---EMIK-------------- 115
FIG LQSNK ++ V +E+V +K A+LL E +K
Sbjct: 80 -HFIGGLQSNKCVTLARDVRGLWAVESVDTQKKATLLDKGWGERLKNHSAQQQQQQQGRA 138
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR----QKYQLNVEGLMCI-------- 163
+ L V++QVNT E KSG+ P+Q V LCR Q +L +EGLM I
Sbjct: 139 EPERLRVFVQVNTSGEESKSGVEPSQA---VELCRFIREQCPRLKLEGLMTIGAIARSKA 195
Query: 164 -PPAMGNPKPHFYLLSE----IARECKLT-----KLSMGMTRDFELAIASGATSVRIGSG 213
P N F L E I +E L +LSMGM+ DFE AIA G+ VR+GS
Sbjct: 196 TTPETQNED--FDCLRETRDRICQELGLEGEEKLELSMGMSEDFEGAIAMGSNEVRVGST 253
Query: 214 IFGERP 219
IFG RP
Sbjct: 254 IFGARP 259
>gi|118101365|ref|XP_424381.2| PREDICTED: similar to Proline synthetase associated [Gallus gallus]
Length = 276
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 126/241 (52%), Gaps = 28/241 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
LG L+ ++++ +A A+RPK LVAVSK ++ + A S GQ F EN +
Sbjct: 12 LGPALRAVTEQVQQAA--ARRPKGLPDMQPRLVAVSKTKPAEMVLDAYSHGQRSFGENYV 69
Query: 59 QEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEM 113
QE +K R +++ FIG LQ + V++++++ ++ +ETV K A ++
Sbjct: 70 QELLEKASDSRILSSCPEIKWHFIGHLQKSNVNKLIAVPNLFMLETVDSVKLADRVNSSW 129
Query: 114 IKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAMGN- 169
K+ + L V +QVNT E K G+ P T V K L GLM I ++G+
Sbjct: 130 QKKGSPQKLKVMVQVNTSGEDSKHGLPPRDTTAAVEHVINKCPSLEFVGLMTIG-SIGHD 188
Query: 170 ----PKPHFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
P P F +L + +E KL +LSMGM+ DF+ AI G+T+VRIGS IFGE
Sbjct: 189 LSKGPNPDFQVLLSLRQEVCEKLNLPIEKVELSMGMSTDFQHAIEVGSTNVRIGSTIFGE 248
Query: 218 R 218
R
Sbjct: 249 R 249
>gi|114619661|ref|XP_528110.2| PREDICTED: proline synthetase co-transcribed homolog isoform 2 [Pan
troglodytes]
Length = 275
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 124/246 (50%), Gaps = 34/246 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 11 LGVGCALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGYGQRTFGEN 68
Query: 57 KLQE-----AKKKWIPLRKEWDVQLRFIGSLQS---NKVSEIVSLFDVIETVSREKTASL 108
+QE + K + L E ++ FIG LQ NK+ + +LF ++ETV K A
Sbjct: 69 YVQELLEKASNPKILSLCPE--IKWHFIGHLQKQNVNKLMAVPNLF-MLETVDSVKLADK 125
Query: 109 LSLEMIKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPP 165
++ K+ L V +Q+NT E K G+ P++T V K L GLM I
Sbjct: 126 VNSSWQKKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIG- 184
Query: 166 AMGN-----PKPHFYLLSEIARE-CK-------LTKLSMGMTRDFELAIASGATSVRIGS 212
+ G+ P P F LL + E CK +LSMGM+ DF+ A+ G+T+VRIGS
Sbjct: 185 SFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGS 244
Query: 213 GIFGER 218
IFGER
Sbjct: 245 TIFGER 250
>gi|260945681|ref|XP_002617138.1| hypothetical protein CLUG_02582 [Clavispora lusitaniae ATCC 42720]
gi|238848992|gb|EEQ38456.1| hypothetical protein CLUG_02582 [Clavispora lusitaniae ATCC 42720]
Length = 268
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 108/217 (49%), Gaps = 32/217 (14%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSN 85
V LVAVSK+ S I + G F EN +QE AK K +P D+Q FIGSLQ+
Sbjct: 54 VRLVAVSKLKPSSDIMALYNHGVRHFGENYVQELTAKAKELP----KDIQWHFIGSLQTG 109
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSR----FLP--VYIQVNTGYEIQKSGI-M 138
K ++ D + V E +L + ++ +R F P VY+Q+NT E QK+G +
Sbjct: 110 KCKDLAKDIDNLYAV--ETIDALKKCKKLENARRAVDFAPINVYLQINTSSEDQKAGYRL 167
Query: 139 PN-----QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK----- 188
N +T DF+ + +L EGLM I + L + A+ +L K
Sbjct: 168 ENMEEIYETVDFLTNKTECKKLKFEGLMTIG-SFAESTSESGLNQDFAKLAELKKTLDEK 226
Query: 189 ------LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
LSMGM+ DF AI+ G++SVR+G+ IF RP
Sbjct: 227 FSLDLQLSMGMSNDFTTAISQGSSSVRVGTSIFEARP 263
>gi|212691474|ref|ZP_03299602.1| hypothetical protein BACDOR_00966 [Bacteroides dorei DSM 17855]
gi|212665954|gb|EEB26526.1| hypothetical protein BACDOR_00966 [Bacteroides dorei DSM 17855]
Length = 222
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 109/214 (50%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+L++ P V LVAVSK ++ + A + GQ IF E+ +QE +K+ L K D++ F
Sbjct: 10 VLSELPS-GVRLVAVSKFHPNEALEEAYAAGQRIFGESHVQEMTQKYETLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NKV + +I + K ++ + K R +P +Q++ E K G
Sbjct: 67 IGHLQTNKVKYMAPYVAMIHAIDSYKLLVEVNKQASKVHRVIPCLLQIHIAQEETKFGFS 126
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNP---KPHFYLLSEIARECK-------- 185
++ ++ + K NV G+M + + + K F L+ +E K
Sbjct: 127 FDECREMLDTGGWKDLKNVRLSGVMGMATNVDDDEQIKREFCSLNTFFKEIKQSYFSDSE 186
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++SMGM+ D+ LA+ +G+T VR+GS IFGER
Sbjct: 187 YFKEISMGMSHDYPLAVEAGSTLVRVGSKIFGER 220
>gi|237712085|ref|ZP_04542566.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|265751787|ref|ZP_06087580.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. 3_1_33FAA]
gi|229453406|gb|EEO59127.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263236579|gb|EEZ22049.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. 3_1_33FAA]
Length = 222
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 109/214 (50%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+L++ P V LVAVSK ++ + A + GQ IF E+ +QE +K+ L K D++ F
Sbjct: 10 VLSELPT-GVRLVAVSKFHPNEALEEAYAAGQRIFGESHVQEMTQKYETLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NKV + +I + K ++ + K R +P +Q++ E K G
Sbjct: 67 IGHLQTNKVKYMAPYVAMIHAIDSYKLLVEVNKQASKVHRVIPCLLQIHIAQEETKFGFS 126
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNP---KPHFYLLSEIARECK-------- 185
++ ++ + K NV G+M + + + K F L+ +E K
Sbjct: 127 FDECREMLDTGGWKDLKNVRLSGVMGMATNVDDDEQIKREFCSLNTFFKEIKQSYFSDSE 186
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++SMGM+ D+ LA+ +G+T VR+GS IFGER
Sbjct: 187 YFKEISMGMSHDYPLAVEAGSTLVRVGSKIFGER 220
>gi|169343770|ref|ZP_02864769.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens C
str. JGS1495]
gi|169298330|gb|EDS80420.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens C
str. JGS1495]
Length = 219
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 105/214 (49%), Gaps = 12/214 (5%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
EN ++ +V L+AVSK +++ A G F ENK+QE +K+ +E V
Sbjct: 5 ENLTKFTEKIPSNVQLIAVSKTRTIEEMEEAYEFGIRKFGENKVQEIIRKFDEFHQE--V 62
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
+ IG LQ+NKV IV +I+++ K + K ++ IQVN G E QK
Sbjct: 63 EWHLIGHLQTNKVKYIVDKVHLIQSLDSIKLLKEIEKVYGKHNKIANTLIQVNIGREEQK 122
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY------LLSEIA----REC 184
GI+ + + + +NV G+M I P + Y L E+ +
Sbjct: 123 YGILEEELDELIEAIEACNNVNVLGIMTIIPKGTEEECRKYFSKTHKLFCELKEKKFKNI 182
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K+ LSMGM+ D+E+AI G+ VRIG GIFG+R
Sbjct: 183 KMDILSMGMSGDYEIAIEEGSNMVRIGQGIFGKR 216
>gi|254881744|ref|ZP_05254454.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|319643711|ref|ZP_07998327.1| hypothetical protein HMPREF9011_03929 [Bacteroides sp. 3_1_40A]
gi|254834537|gb|EET14846.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|317384653|gb|EFV65616.1| hypothetical protein HMPREF9011_03929 [Bacteroides sp. 3_1_40A]
Length = 222
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 109/214 (50%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+L++ P V LVAVSK ++ + A + GQ IF E+ +QE +K+ L K D++ F
Sbjct: 10 VLSELPA-GVRLVAVSKFHPNEALEEAYAAGQRIFGESHVQEMTQKYETLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NKV + +I + K ++ + K R +P +Q++ E K G
Sbjct: 67 IGHLQTNKVKYMAPYVAMIHAIDSYKLLVEVNKQASKVHRVIPCLLQIHIAQEETKFGFS 126
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNP---KPHFYLLSEIARECK-------- 185
++ ++ + K NV G+M + + + K F L+ +E K
Sbjct: 127 FDECREMLDTGGWKDLKNVRLSGVMGMATNVDDDEQIKREFCSLNTFFKEIKQNYFSDSE 186
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++SMGM+ D+ LA+ +G+T VR+GS IFGER
Sbjct: 187 HFKEISMGMSHDYPLAVEAGSTLVRVGSKIFGER 220
>gi|217034324|ref|ZP_03439740.1| hypothetical protein HP9810_491g17 [Helicobacter pylori 98-10]
gi|216943209|gb|EEC22676.1| hypothetical protein HP9810_491g17 [Helicobacter pylori 98-10]
Length = 222
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 111/224 (49%), Gaps = 34/224 (15%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-- 70
KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K K L
Sbjct: 14 KIEKARIAYSRHH-IVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKIKMRSLEHLP 72
Query: 71 -EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV----YIQ 125
EW IGSLQ NK++ ++S + + + L+L++ K+ L V +Q
Sbjct: 73 LEW----HMIGSLQENKINALLS---LKSALLHSLDSLKLALKIEKRCEILGVNLNALLQ 125
Query: 126 VNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
VN+ YE KSG+MP +T + + + L ++GLMCI + K EI +
Sbjct: 126 VNSAYEESKSGVMPEETLEIYSQISETCKHLKLKGLMCIGAHADDEK-------EIEKSF 178
Query: 185 KLTK-----------LSMGMTRDFELAIASGATSVRIGSGIFGE 217
TK LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 179 ITTKKLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|240256085|ref|NP_567760.4| pyridoxal phosphate binding [Arabidopsis thaliana]
gi|14030629|gb|AAK52989.1|AF375405_1 AT4g26860/F10M23_200 [Arabidopsis thaliana]
gi|17978899|gb|AAL47419.1| AT4g26860/F10M23_200 [Arabidopsis thaliana]
gi|21536981|gb|AAM61322.1| putative proline synthetase associated protein [Arabidopsis
thaliana]
gi|332659861|gb|AEE85261.1| putative pyridoxal phosphate-dependent enzyme, YBL036C type
[Arabidopsis thaliana]
Length = 244
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 101/211 (47%), Gaps = 18/211 (8%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R + V ++ VSK IR G F EN +QE K L + D++ F+G L
Sbjct: 30 RDPERVRVLPVSKTKPVSLIRQIYDAGHRCFGENYVQEIIDKAPQLPE--DIEWHFVGHL 87
Query: 83 QSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQVNTGYEIQKSGIM 138
QSNK + V ++ V EK A+ L + R L V +QVNT E+ KSGI
Sbjct: 88 QSNKAKTLLTGVPNLAMVHGVDGEKVANHLDRAVSNLGRHPLKVLVQVNTSGEVSKSGIE 147
Query: 139 PNQTKDFVILCRQKY-QLNVEGLMCI--PPAMGNPKPHFYLLSEI-ARECKLT------- 187
P+ + + L GLM I P P+ +F LS A CK
Sbjct: 148 PSSVVELARHVKHHCPNLVFSGLMTIGMPDYTSTPE-NFRTLSNCRADVCKALGMAEDQF 206
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ DFELAI G+T+VR+GS IFG R
Sbjct: 207 ELSMGMSGDFELAIEMGSTNVRVGSTIFGPR 237
>gi|37520271|ref|NP_923648.1| hypothetical protein glr0702 [Gloeobacter violaceus PCC 7421]
gi|35211264|dbj|BAC88643.1| glr0702 [Gloeobacter violaceus PCC 7421]
Length = 232
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 102/208 (49%), Gaps = 17/208 (8%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+V LVAV+K V ++IR A CG F E+++QE ++K L V IGSLQ NK
Sbjct: 17 AVRLVAVTKQVPVERIREAYDCGLRDFGESRIQEVQQKIPQLTDLQGVSWHLIGSLQRNK 76
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
+ +FD I +V A L+ M R + +QV + KSG + + +
Sbjct: 77 ARPALEVFDWIHSVDSLPLAERLASLMDSVGRRPRLLLQVKLAADPTKSGWSQAELEAAL 136
Query: 147 ILCRQKYQLNVEGLMCIPP----AMGNPKPHFYLLSEIAREC------------KLTKLS 190
QL++ GL I P GN + F ++ +AR+ ++ +LS
Sbjct: 137 PRLAALPQLDIRGLTAIAPLGLGEQGN-RTLFGQVAALARDLGRRAGEAGWQHIRMEELS 195
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGM+ D+ AIA+GAT VR+G +FG R
Sbjct: 196 MGMSGDYPQAIAAGATMVRLGQVLFGSR 223
>gi|19553353|ref|NP_601355.1| TIM-barrel fold family protein [Corynebacterium glutamicum ATCC
13032]
gi|62390992|ref|YP_226394.1| pyridoxal-5'-phosphate dependent enzyme [Corynebacterium glutamicum
ATCC 13032]
gi|41326331|emb|CAF20493.1| pyridoxal-5'-phosphate dependent enzyme [Corynebacterium glutamicum
ATCC 13032]
Length = 234
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+LQ + +I+ + RP+ SV L+ V+K + I++ G EN+ QEA+ K
Sbjct: 10 RLQQVQARIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQEFGVTAVGENREQEARAKA 69
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL----SLEMIKQSRF-- 119
+ L D+ IG +QS K + I + +V EK A L +L + + R
Sbjct: 70 LELP---DMDFHMIGQIQSKKANSIARWAAAVHSVDSEKIAEALGRGVALALDRGDRTSD 126
Query: 120 -LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY--- 175
LP +IQ++ + + G +Q L EGLMC+PP P+ F
Sbjct: 127 ELPCFIQLSLDGDPSRGGTPLSQVTQLADCISDTTHLRFEGLMCVPPLGWGPEKAFSQAR 186
Query: 176 -LLSEIARECKLT-KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+LS + + + S GM+ D AI G+T VR+G+ I G RP
Sbjct: 187 DVLSGLEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRP 232
>gi|17533025|ref|NP_495001.1| hypothetical protein F09E5.8 [Caenorhabditis elegans]
gi|1731185|sp|P52057|PROSC_CAEEL RecName: Full=Proline synthase co-transcribed bacterial homolog
protein
gi|1019957|gb|AAA79348.1| Hypothetical protein F09E5.8 [Caenorhabditis elegans]
Length = 244
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 99/221 (44%), Gaps = 19/221 (8%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQ 75
A+ A + LVAVSK + I S Q F EN +QE ++K L K D++
Sbjct: 19 DAVTASQATKRCRLVAVSKTKSADLIEACYSQNQRHFGENYVQELEEKSDVLASKCLDIR 78
Query: 76 LRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIKQSRFLP---VYIQVNTGY 130
FIG +QSNK+ +I + +ETV EK A + E K L V +QVNT
Sbjct: 79 WHFIGQVQSNKIGKICNSPGLWCVETVETEKHARIFDKEWSKHGANLSPLRVLVQVNTSG 138
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQ-LNVEGLMCIPP----AMGNPKPHFYLL-------- 177
E K GI + R++ Q L +G M I P F L
Sbjct: 139 EDNKGGIEIGEAPKLAEFIRKECQNLKFDGFMTIGSFDNSHASGENPDFEKLFKVRQTWA 198
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +LSMGM+ DF AI GATSVR+GS +FG R
Sbjct: 199 EQTGESADSVELSMGMSDDFLQAIHQGATSVRVGSKLFGAR 239
>gi|74318436|ref|YP_316176.1| hypothetical protein Tbd_2418 [Thiobacillus denitrificans ATCC
25259]
gi|74057931|gb|AAZ98371.1| Protein of unknown function UPF0001 [Thiobacillus denitrificans
ATCC 25259]
Length = 246
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 96/199 (48%), Gaps = 8/199 (4%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SV L+AVSK + +R GQ F EN LQEA K L + + FIG +QSNK
Sbjct: 45 SVELLAVSKAFGAAAVRALAGAGQRAFGENYLQEALVKQAAL-ADLALDWHFIGPIQSNK 103
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
I F + +V R K A LS + L V I+VN E K G P+ + V
Sbjct: 104 TRPIAENFGWVHSVDRLKIAQRLSAQRPLGLPPLNVCIEVNVSGEASKGGASPDALPELV 163
Query: 147 ILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEI---ARE-CKLTKLSMGMTRDFEL 199
+ L + G+M IP + + F L E+ RE L +SMGM+ D E
Sbjct: 164 EAVARLPGLRLRGMMTIPAPTHDFDAQRAAFRRLRELFDGLRERHALDTMSMGMSADLEA 223
Query: 200 AIASGATSVRIGSGIFGER 218
AI GAT VR+G+ +FGER
Sbjct: 224 AILEGATIVRVGTALFGER 242
>gi|150006349|ref|YP_001301093.1| hypothetical protein BVU_3868 [Bacteroides vulgatus ATCC 8482]
gi|294776254|ref|ZP_06741739.1| pyridoxal phosphate enzyme, YggS family [Bacteroides vulgatus
PC510]
gi|149934773|gb|ABR41471.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
gi|294449937|gb|EFG18452.1| pyridoxal phosphate enzyme, YggS family [Bacteroides vulgatus
PC510]
Length = 222
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 109/214 (50%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+L++ P V LVAVSK ++ + A + GQ IF E+ +QE +K+ L K D++ F
Sbjct: 10 VLSELPA-GVRLVAVSKFHPNEALEEAYAAGQRIFGESHVQEMTQKYETLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NKV + +I + K ++ + K R +P +Q++ E K G
Sbjct: 67 IGHLQTNKVKYMAPYVAMIHAIDSYKLLVEVNKQASKVHRVIPCLLQIHIAQEETKFGFS 126
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNP---KPHFYLLSEIARECK-------- 185
++ ++ + K NV G+M + + + K F L+ +E K
Sbjct: 127 FDECREMLDTGGWKDLKNVRLSGVMGMATNVDDDEQIKREFCSLNTFFKEIKQNYFSDSE 186
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++SMGM+ D+ LA+ +G+T VR+GS IFGER
Sbjct: 187 YFKEISMGMSHDYPLAVEAGSTLVRVGSKIFGER 220
>gi|210135218|ref|YP_002301657.1| hypothetical protein HPP12_1025 [Helicobacter pylori P12]
gi|210133186|gb|ACJ08177.1| hypothetical protein HPP12_1025 [Helicobacter pylori P12]
Length = 222
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 117/225 (52%), Gaps = 22/225 (9%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
K+ KIE + R V +VAVSK + I+ +C Q F EN++Q+ K K
Sbjct: 7 KIDTLITKIEKARTAYSR-HHIVKIVAVSKNAPPEAIQHYYNCSQRAFGENRVQDLKIKM 65
Query: 66 IPLRK---EWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLP 121
L EW IGSLQ NK++ ++SL ++ ++ K L+L++ K+ L
Sbjct: 66 HSLEHLPLEW----HMIGSLQENKINALLSLKPALLHSLDSLK----LALKIEKRCEMLG 117
Query: 122 V----YIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNP---KPH 173
V +QVN+ YE KSG++P +T + + + +L ++GLMCI + +
Sbjct: 118 VNLNALLQVNSTYEESKSGVVPEETLETYSQISETCKRLKLKGLMCIGAHADDETKIEKS 177
Query: 174 FYLLSEIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
F ++ + K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 178 FITTKKLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|300871778|ref|YP_003786651.1| proline synthetase associated protein [Brachyspira pilosicoli
95/1000]
gi|300689479|gb|ADK32150.1| proline synthetase associated protein [Brachyspira pilosicoli
95/1000]
Length = 228
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 103/201 (51%), Gaps = 14/201 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCG-QVIFAENKLQEAKKKWIPLRKEWD-VQLRFIGSLQS 84
++ +VAVSK + I+ LS + E+K Q + + L K +D + FIG +QS
Sbjct: 29 NIDVVAVSKYSSIETIKEFLSLNINLPLGESKAQSLRDRAEELNKNYDNIIWHFIGRIQS 88
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV IV D+I++V + A ++ E IK ++ + +Q N E QK G D
Sbjct: 89 NKVKYIVKYADLIQSVDSIEIAEYINKEAIKNNKVQDILLQFNISNEEQKGGF---NLSD 145
Query: 145 FVILCRQKYQL---NVEGLMCIPPAMGNP---KPHFYLLSEI---ARECKLTKLSMGMTR 195
+ ++ + L N++GLM I + N + F L+E+ ++ + LSMGMT
Sbjct: 146 YNMVYDKIKNLPNVNIKGLMGISLKVDNDFEIEKEFESLNEVFIKLKDENTSILSMGMTN 205
Query: 196 DFELAIASGATSVRIGSGIFG 216
D+ LAI GA +RIGSG G
Sbjct: 206 DYHLAIKHGANMIRIGSGFLG 226
>gi|157869914|ref|XP_001683508.1| hypothetical protein [Leishmania major strain Friedlin]
gi|68126573|emb|CAJ05058.1| putative alanine racemase [Leishmania major strain Friedlin]
Length = 245
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 110/212 (51%), Gaps = 28/212 (13%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSN 85
V+L+AVSK + + GQ +F EN +QE K K +P W FIG LQSN
Sbjct: 35 VTLIAVSKTKSPACLLNLYNLGQRVFGENYVQELGEKAKELPEDTVW----HFIGHLQSN 90
Query: 86 KVSEI---VSLFDVIETVSREKTASLLS--LEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
KV E+ V V++T+ E AS ++ + R L VYIQVNT E KSG P
Sbjct: 91 KVKELLEGVPNLRVVQTIDSENLASKVNEGCRKYRGGRPLEVYIQVNTSGEETKSGTEPG 150
Query: 141 QTKDFVILCRQKYQ----LNVEGLMCI--PPAMGNPKPHFYLLS----EIARECKLT--- 187
+ V L + L ++GLM I P P+ +F L+ ++A+ ++
Sbjct: 151 EAT--VTLAKYIADECPLLQLKGLMTIGMPDYTSRPE-NFECLTKCREDVAQAVQMAPED 207
Query: 188 -KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AI G+T+VR+G+ IFG+R
Sbjct: 208 LELSMGMSGDYVNAIRMGSTAVRVGTSIFGQR 239
>gi|288553147|ref|YP_003425082.1| hypothetical protein BpOF4_00605 [Bacillus pseudofirmus OF4]
gi|288544307|gb|ADC48190.1| hypothetical protein BpOF4_00605 [Bacillus pseudofirmus OF4]
Length = 229
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 16/205 (7%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R S+++VAV+K V +++ + A+ G V EN+ + K ++++ V FIGSL
Sbjct: 23 RDPASINVVAVTKYVSNERAKEAIDAGVVHLGENRAEGLAMKQEDIQEQ--VSWHFIGSL 80
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
QS KV ++ + ++ R A L + R L ++QVN E K+G+ +
Sbjct: 81 QSKKVKKVAPHISYLHSLDRVSLAKELDKRL---DRELACFVQVNVSKEESKAGLDIEEV 137
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKL--------TKLSM 191
+F+ L + GLM + P + +P +P F L +I + + T+LSM
Sbjct: 138 DEFIQELEAYPSLKIIGLMTMAPFVNDPEETRPIFKALKKIQLDIQAKNYSHAPCTELSM 197
Query: 192 GMTRDFELAIASGATSVRIGSGIFG 216
GM+ D+++AI GAT +RIG+ + G
Sbjct: 198 GMSNDYQVAIEEGATFIRIGTSLVG 222
>gi|116782168|gb|ABK22393.1| unknown [Picea sitchensis]
Length = 244
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 18/227 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ ++++ +A + R V +VAVSK IR G F EN +QE K
Sbjct: 15 LRTVLRRVQQAAEKSGRQASQVRVVAVSKTKPVSLIREVYEAGHRYFGENYVQEILDKAP 74
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVS----LFDVIETVSREKTASLLSLEMIKQSRF-LP 121
L D+Q FIG LQSNK +++ L+ ++E+V K A+ L + R L
Sbjct: 75 EL--PTDIQWHFIGHLQSNKAKAVIAGVPNLY-MVESVDSSKVANHLDRAVSSIGRKPLK 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKP-HFYLLS- 178
V +QVNT E K G+ P++ + + Q L GLM I + +P +F LS
Sbjct: 132 VLVQVNTSGEESKYGVEPSECVELAKHVKFQCPNLEFSGLMTIGMLDYSSRPENFEALSG 191
Query: 179 ---EIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + +++ LSMGM+ DFE AI G+T+VRIGS IFG R
Sbjct: 192 CRIEVCKALGISEDQCELSMGMSGDFEQAIEMGSTNVRIGSTIFGAR 238
>gi|257459425|ref|ZP_05624534.1| pyridoxal phosphate enzyme, YggS family [Campylobacter gracilis
RM3268]
gi|257442850|gb|EEV17984.1| pyridoxal phosphate enzyme, YggS family [Campylobacter gracilis
RM3268]
Length = 212
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 115/211 (54%), Gaps = 26/211 (12%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
AK V LVAVSK V + ++R S GQ+ F EN++QE K+K LR E ++ FIG
Sbjct: 13 AKAGAGEVQLVAVSKNVGTDEVRELYSQGQIAFGENRVQELKRKSELLR-ELPLKWHFIG 71
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQVNTGYEIQKSGIMP 139
+LQSNK++++++L T+ + + L+L + K+ + L +++N E K+G+
Sbjct: 72 TLQSNKINQLIALRP---TLWQSCNSCELALAVNKRLNYPLDTLLEINAAGESSKTGLDK 128
Query: 140 NQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK---------- 188
N+ ++F+ + ++ LN+ G+M I + P ++IAR + T+
Sbjct: 129 NRAVEEFLRIKQECKNLNLIGVMSIGAHVSEP-------AQIARSFEATREIFDALVPHG 181
Query: 189 ---LSMGMTRDFELAIASGATSVRIGSGIFG 216
SMGM+ DFELAI G+ +R+G ++
Sbjct: 182 ARICSMGMSDDFELAIKCGSNMIRLGRILYA 212
>gi|256844915|ref|ZP_05550373.1| proline synthetase associated protein [Fusobacterium sp. 3_1_36A2]
gi|256718474|gb|EEU32029.1| proline synthetase associated protein [Fusobacterium sp. 3_1_36A2]
Length = 223
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 106/202 (52%), Gaps = 13/202 (6%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD--VQLRFIGSLQ 83
+ V LVAV+K + I L GQ I ENK+Q K K I KE + ++ FIG+LQ
Sbjct: 22 EKVKLVAVTKYSSVEDIEEFLETGQNICGENKVQVIKDK-IEYFKEKNKKIKWHFIGNLQ 80
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NKV I+ D+I +V++ A ++ + + + + V +++N E K G ++ K
Sbjct: 81 KNKVKYIIDDVDLIHSVNKLSLAQEINKKAEQSGKIMDVLLEINVYGEESKQGYSLDELK 140
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR----------ECKLTKLSMGM 193
+I + LN+ G+M + P + K + SE+ + LT+LSMGM
Sbjct: 141 CDIIELQNLKNLNIIGVMTMAPFTDDEKILRMVFSELRKIKGELNKEYFNNNLTELSMGM 200
Query: 194 TRDFELAIASGATSVRIGSGIF 215
+ D+++A+ G+T +R+G+ IF
Sbjct: 201 SNDYKIALQEGSTFIRVGTKIF 222
>gi|119583765|gb|EAW63361.1| proline synthetase co-transcribed homolog (bacterial), isoform
CRA_b [Homo sapiens]
gi|119583768|gb|EAW63364.1| proline synthetase co-transcribed homolog (bacterial), isoform
CRA_b [Homo sapiens]
Length = 310
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 123/246 (50%), Gaps = 34/246 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 46 LGVGCALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 103
Query: 57 KLQE-----AKKKWIPLRKEWDVQLRFIGSLQS---NKVSEIVSLFDVIETVSREKTASL 108
+QE + K + L E ++ FIG LQ NK+ + +LF ++ETV K A
Sbjct: 104 YVQELLEKASNPKILSLCPE--IKWHFIGHLQKQNVNKLMAVPNLF-MLETVDSVKLADK 160
Query: 109 L--SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPP 165
+ S + L V +Q+NT E K G+ P++T V K L GLM I
Sbjct: 161 VNSSWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIG- 219
Query: 166 AMGN-----PKPHFYLLSEIARE-CK-------LTKLSMGMTRDFELAIASGATSVRIGS 212
+ G+ P P F LL + E CK +LSMGM+ DF+ A+ G+T+VRIGS
Sbjct: 220 SFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGS 279
Query: 213 GIFGER 218
IFGER
Sbjct: 280 TIFGER 285
>gi|322492041|emb|CBZ27316.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 245
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 109/213 (51%), Gaps = 30/213 (14%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSN 85
V+L+AV K + + GQ +F EN +QE K K +P W FIG LQSN
Sbjct: 35 VTLIAVGKTKSPACLLNLYNLGQRVFGENYVQELGEKAKELPEDTMW----HFIGHLQSN 90
Query: 86 KVSEI---VSLFDVIETVSREKTASLLS--LEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
KV E+ V VI+T+ E AS ++ + R L VY+QVNT E KSG P
Sbjct: 91 KVKELLEGVPNLRVIQTIDSENLASKVNEGCRKYRGGRPLEVYVQVNTSGEETKSGTEPG 150
Query: 141 QT-----KDFVILCRQKYQLNVEGLMCI--PPAMGNPKPHFYLLS----EIARECKLT-- 187
+ K V C L ++GLM I P P+ +F L+ ++++ ++
Sbjct: 151 EATVTLAKYIVDECPL---LQLKGLMTIGMPDYTSRPE-NFECLTKCRQDVSQAVQMAPE 206
Query: 188 --KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AI G+T+VR+GS IFGER
Sbjct: 207 DLELSMGMSGDYVNAIRMGSTTVRVGSSIFGER 239
>gi|314981156|gb|EFT25250.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL110PA3]
gi|315091979|gb|EFT63955.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL110PA4]
Length = 198
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 90/195 (46%), Gaps = 21/195 (10%)
Query: 45 ALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGSLQSNKVSEIVSLFDVIET 99
A G +F ENK+Q+A K + EW + IG LQ+NK + +
Sbjct: 5 AYRAGYRLFGENKVQDALAKSELMDDDHPGLEWSI----IGGLQTNKAKYVARFATEFQA 60
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ K A L + K+ R L V +Q+N+ E QKSGI P + DF L+V G
Sbjct: 61 LDSLKIAHELDKRLQKEGRQLRVLVQMNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRG 120
Query: 160 LMCIPPAMGNPKP-----------HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSV 208
LM + + + L E ++LSMGM+ D E+AIA G+T V
Sbjct: 121 LMTVALNSSDQRAVADCFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQV 180
Query: 209 RIGSGIFGER-PCQT 222
RIG+ IFG R P +T
Sbjct: 181 RIGTDIFGTRDPVRT 195
>gi|289177628|gb|ADC84874.1| proline synthetase-associated protein [Bifidobacterium animalis
subsp. lactis BB-12]
Length = 297
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 106/242 (43%), Gaps = 44/242 (18%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE--------- 71
A RP V L+A +K D +I A+ G + EN+ QE K LR +
Sbjct: 53 AGRPAGDVRLLAATKTRDVGEIMAAIDAGVPMIGENRPQEVVAKIDGLRYQCKQRGYVIG 112
Query: 72 -WDVQL----------------------RFIGSLQSNKVSEIVSLFDVIETVSREKTASL 108
+D L IG LQSNK+S+I+ + +E+V + A
Sbjct: 113 AYDFDLTVDADPTYAEPEDLKEAPFIPFHLIGQLQSNKISKILPTVNTVESVDSLELAEK 172
Query: 109 LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG 168
++ + + R + V ++VN E KSG P+Q + + ++GLM + +
Sbjct: 173 IARRCMVRGRSMGVLLEVNESGEESKSGCAPDQALELAEQIAALGGVELQGLMTVGAHVR 232
Query: 169 NPK------PHFYLLSE------IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ + H L E + + +LSMGM+ D E AIA GAT VR+GS IFG
Sbjct: 233 DERRIREGFAHLRGLRERIQSLGMPGTARCVELSMGMSGDLEYAIAEGATIVRVGSAIFG 292
Query: 217 ER 218
ER
Sbjct: 293 ER 294
>gi|319401518|gb|EFV89728.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus epidermidis
FRI909]
Length = 222
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 16/200 (8%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
++AV+K V ++ R A G F EN+L KKK L D++L FIGSLQS KV
Sbjct: 28 HVIAVTKYVTIERAREAYKAGIRHFGENRLDGFKKKKESL--PSDIKLHFIGSLQSRKVK 85
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
+I++ D + R A ++ + + + ++QVN E K GI + F+
Sbjct: 86 DIINEVDYFHALDRLSLAKEINK---RANHVIKCFLQVNVSGEESKHGIALEEVNQFINQ 142
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR-----------ECKLTKLSMGMTRDF 197
++ + + GLM + P + L E+ T+LSMGM+ D+
Sbjct: 143 IKEYENIQIIGLMTMAPLTDDLSYIKNLFKELRHKRNEIQQFNLAHAPCTELSMGMSNDY 202
Query: 198 ELAIASGATSVRIGSGIFGE 217
++A+ GAT VRIG+ + GE
Sbjct: 203 QMAVEEGATFVRIGTKLVGE 222
>gi|218289917|ref|ZP_03494107.1| alanine racemase domain protein [Alicyclobacillus acidocaldarius
LAA1]
gi|218240057|gb|EED07243.1| alanine racemase domain protein [Alicyclobacillus acidocaldarius
LAA1]
Length = 229
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 108/218 (49%), Gaps = 13/218 (5%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+++ + ++E + + R V +VAV+K + + G EN+ Q A+ K
Sbjct: 8 QRVEEIRAQVEAACRRSGRDPAGVRIVAVTKTASPDVLPALHAAGIRDAGENRWQIARDK 67
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ FIG+LQ+NKV +V F I ++ R + A LS E +++ + V +
Sbjct: 68 -LAHPAASGFHWHFIGTLQTNKVKYVVPRFAWIHSLDRPELAHALSEEAVRRGVVVNVLV 126
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY--------- 175
QVN E QK G+ P+ + + L R+ L+V GLM + P P+ Y
Sbjct: 127 QVNISGEAQKHGVAPDDAETLIRLARELPGLSVRGLMTMAPITERPEDVRYVFAGLRALM 186
Query: 176 --LLSEIARECKLTKLSMGMTRDFELAIASGATSVRIG 211
L S ++ E L +LSMGM+ DFE+A+ GAT +RIG
Sbjct: 187 HDLRSRLSLET-LDQLSMGMSDDFEVAVEEGATMIRIG 223
>gi|241191502|ref|YP_002968896.1| hypothetical protein Balac_1487 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|241196907|ref|YP_002970462.1| hypothetical protein Balat_1487 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|240249894|gb|ACS46834.1| hypothetical protein Balac_1487 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240251461|gb|ACS48400.1| hypothetical protein Balat_1487 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|295794494|gb|ADG34029.1| hypothetical protein BalV_1441 [Bifidobacterium animalis subsp.
lactis V9]
Length = 281
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 106/242 (43%), Gaps = 44/242 (18%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE--------- 71
A RP V L+A +K D +I A+ G + EN+ QE K LR +
Sbjct: 37 AGRPAGDVRLLAATKTRDVGEIMAAIDAGVPMIGENRPQEVVAKIDGLRYQCKQRGYVIG 96
Query: 72 -WDVQL----------------------RFIGSLQSNKVSEIVSLFDVIETVSREKTASL 108
+D L IG LQSNK+S+I+ + +E+V + A
Sbjct: 97 AYDFDLTVDADPTYAEPEDLKEAPFIPFHLIGQLQSNKISKILPTVNTVESVDSLELAEK 156
Query: 109 LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG 168
++ + + R + V ++VN E KSG P+Q + + ++GLM + +
Sbjct: 157 IARRCMVRGRSMGVLLEVNESGEESKSGCAPDQALELAEQIAALGGVELQGLMTVGAHVR 216
Query: 169 NPK------PHFYLLSE------IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ + H L E + + +LSMGM+ D E AIA GAT VR+GS IFG
Sbjct: 217 DERRIREGFAHLRGLRERIQSLGMPGTARCVELSMGMSGDLEYAIAEGATIVRVGSAIFG 276
Query: 217 ER 218
ER
Sbjct: 277 ER 278
>gi|183602732|ref|ZP_02964095.1| hypothetical protein BIFLAC_00835 [Bifidobacterium animalis subsp.
lactis HN019]
gi|219683168|ref|YP_002469551.1| enzyme with a TIM-barrel fold [Bifidobacterium animalis subsp.
lactis AD011]
gi|183217970|gb|EDT88618.1| hypothetical protein BIFLAC_00835 [Bifidobacterium animalis subsp.
lactis HN019]
gi|219620818|gb|ACL28975.1| predicted enzyme with a TIM-barrel fold [Bifidobacterium animalis
subsp. lactis AD011]
Length = 285
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 106/242 (43%), Gaps = 44/242 (18%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE--------- 71
A RP V L+A +K D +I A+ G + EN+ QE K LR +
Sbjct: 41 AGRPAGDVRLLAATKTRDVGEIMAAIDAGVPMIGENRPQEVVAKIDGLRYQCKQRGYVIG 100
Query: 72 -WDVQL----------------------RFIGSLQSNKVSEIVSLFDVIETVSREKTASL 108
+D L IG LQSNK+S+I+ + +E+V + A
Sbjct: 101 AYDFDLTVDADPTYAEPEDLKEAPFIPFHLIGQLQSNKISKILPTVNTVESVDSLELAEK 160
Query: 109 LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG 168
++ + + R + V ++VN E KSG P+Q + + ++GLM + +
Sbjct: 161 IARRCMVRGRSMGVLLEVNESGEESKSGCAPDQALELAEQIAALGGVELQGLMTVGAHVR 220
Query: 169 NPK------PHFYLLSE------IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ + H L E + + +LSMGM+ D E AIA GAT VR+GS IFG
Sbjct: 221 DERRIREGFAHLRGLRERIQSLGMPGTARCVELSMGMSGDLEYAIAEGATIVRVGSAIFG 280
Query: 217 ER 218
ER
Sbjct: 281 ER 282
>gi|126695752|ref|YP_001090638.1| TIM-barrel fold family protein [Prochlorococcus marinus str. MIT
9301]
gi|126542795|gb|ABO17037.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
str. MIT 9301]
Length = 211
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 112/200 (56%), Gaps = 13/200 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+V+++AVSK S++I+ + GQ F E+K+QEA +K + L+ + FIG +QSNK
Sbjct: 16 NVNILAVSKGFKSQEIKTIQNIGQNDFGESKVQEALEKQLTLKDHKQINWHFIGRIQSNK 75
Query: 87 VSEIVSLFDVIETV-SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
+ +IV F I +V S EK + ++ ++ L + +QV + K G P +F
Sbjct: 76 IRKIVQNFKYIHSVDSFEKLQKISNISREEKKNPL-IMLQVKLSDDPTKGGFNP----EF 130
Query: 146 VILCRQKYQ----LNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTKLSMGMTRDFE 198
+I+ ++ Q +++ GLM I P + K + L + +A +L SMGM+ D+E
Sbjct: 131 LIMKWREIQELKNISLTGLMTINPKGLSSKENSGLFKKCRALADSLQLPDCSMGMSGDWE 190
Query: 199 LAIASGATSVRIGSGIFGER 218
AI +G+T +R+GS IFG R
Sbjct: 191 EAIDAGSTWLRLGSLIFGGR 210
>gi|301306560|ref|ZP_07212622.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 124-1]
gi|300838178|gb|EFK65938.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 124-1]
Length = 220
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 93/198 (46%), Gaps = 26/198 (13%)
Query: 39 SKKIRVALSCGQVIFAENKLQEAKKKWIPLRK------EWDVQLRFIGSLQSNKVSEIVS 92
+ I A+ GQ F EN +QE K ++ EW FIG LQSNK +
Sbjct: 26 ASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEW----HFIGPLQSNKSRLVAE 81
Query: 93 LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK 152
FD T+ R + A+ L+ + + L V IQ+N E KSGI + + +
Sbjct: 82 HFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAEL 141
Query: 153 YQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC------------KLTKLSMGMTRDFELA 200
+L + GLM IP P+ + E+AR+ + LS+GM+ D E A
Sbjct: 142 PRLRLRGLMAIPA----PESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAA 197
Query: 201 IASGATSVRIGSGIFGER 218
IA+G+T VRIG+ IFG R
Sbjct: 198 IAAGSTMVRIGTAIFGAR 215
>gi|242242470|ref|ZP_04796915.1| alanine racemase domain protein [Staphylococcus epidermidis W23144]
gi|242234044|gb|EES36356.1| alanine racemase domain protein [Staphylococcus epidermidis W23144]
Length = 222
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 20/202 (9%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQ--EAKKKWIPLRKEWDVQLRFIGSLQSNK 86
++AV+K V ++ R A G F EN+L + KK+ +P D++L FIGSLQS K
Sbjct: 28 HVIAVTKYVTIERAREAYKAGIRHFGENRLDGFKGKKESLP----SDIKLHFIGSLQSRK 83
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V +I++ D + R A ++ + + + ++QVN E K GI + F+
Sbjct: 84 VKDIINEVDYFHALDRLSLAKEINK---RANHVIKCFLQVNVSGEKSKHGIALEEVNQFI 140
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR-----------ECKLTKLSMGMTR 195
++ + + GLM + P + L E+ T+LSMGM+
Sbjct: 141 NQIKEYENIQIIGLMTMAPLTDDLSYIKNLFKELRHKRNEIQQFNLAHAPCTELSMGMSN 200
Query: 196 DFELAIASGATSVRIGSGIFGE 217
D+++A+ GAT VRIG+ + GE
Sbjct: 201 DYQMAVEEGATFVRIGTKLVGE 222
>gi|237741593|ref|ZP_04572074.1| proline synthetase associated protein [Fusobacterium sp. 4_1_13]
gi|294785799|ref|ZP_06751087.1| pyridoxal phosphate enzyme, YggS family [Fusobacterium sp. 3_1_27]
gi|229429241|gb|EEO39453.1| proline synthetase associated protein [Fusobacterium sp. 4_1_13]
gi|294487513|gb|EFG34875.1| pyridoxal phosphate enzyme, YggS family [Fusobacterium sp. 3_1_27]
Length = 223
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 106/202 (52%), Gaps = 13/202 (6%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD--VQLRFIGSLQ 83
+ V LVAV+K + I L GQ I ENK+Q K K I KE + ++ FIG+LQ
Sbjct: 22 EKVKLVAVTKYSSVEDIEEFLKTGQNICGENKVQVIKDK-IEYFKEKNKKIKWHFIGNLQ 80
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NKV I+ D+I +V++ A ++ + + + + V +++N E K G ++ K
Sbjct: 81 KNKVKYIIDDVDLIHSVNKLSLAQEINKKAEQSGKIMDVLLEINVYGEESKQGYSLDELK 140
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR----------ECKLTKLSMGM 193
+I + LN+ G+M + P + K + SE+ + LT+LSMGM
Sbjct: 141 CDIIELQNLKNLNIIGVMTMAPFTDDEKILRMVFSELRKIKGELNKEYFNNNLTELSMGM 200
Query: 194 TRDFELAIASGATSVRIGSGIF 215
+ D+++A+ G+T +R+G+ IF
Sbjct: 201 SNDYKIALQEGSTFIRVGTKIF 222
>gi|197101691|ref|NP_001126869.1| proline synthase co-transcribed bacterial homolog protein [Pongo
abelii]
gi|75041031|sp|Q5R4Z1|PROSC_PONAB RecName: Full=Proline synthase co-transcribed bacterial homolog
protein
gi|55732977|emb|CAH93175.1| hypothetical protein [Pongo abelii]
Length = 275
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 122/246 (49%), Gaps = 34/246 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + L RP+D LVAVSK + + A GQ F EN
Sbjct: 11 LGVGCALRAVNERVQQAVAL--RPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 68
Query: 57 KLQE-----AKKKWIPLRKEWDVQLRFIGSLQS---NKVSEIVSLFDVIETVSREKTASL 108
+QE + K + L E ++ FIG LQ NK+ + +LF V+ETV K A
Sbjct: 69 YVQELLEKASNPKILSLGPE--IKWHFIGHLQKQNVNKLMAVPNLF-VLETVDSVKLAGK 125
Query: 109 LSLEMIKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPP 165
++ K+ L V +Q+NT E K G+ P++T V K L GLM I
Sbjct: 126 VNSSWQKKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIG- 184
Query: 166 AMGN-----PKPHFYLLSEIARE-CK-------LTKLSMGMTRDFELAIASGATSVRIGS 212
+ G+ P P F LL + E CK +LSMGM+ DF+ AI G+T+VRIGS
Sbjct: 185 SFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSVDFQHAIEVGSTNVRIGS 244
Query: 213 GIFGER 218
IFGER
Sbjct: 245 MIFGER 250
>gi|238798616|ref|ZP_04642091.1| alanine racemase [Yersinia mollaretii ATCC 43969]
gi|238717502|gb|EEQ09343.1| alanine racemase [Yersinia mollaretii ATCC 43969]
Length = 198
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 92/202 (45%), Gaps = 21/202 (10%)
Query: 33 VSKMVDSKKIRVALSCGQVIFAENKLQE--------AKKKWIPLRKEWDVQLRFIGSLQS 84
+SK I A++ GQ F EN +QE A K IP EW FIG LQS
Sbjct: 1 MSKTKPVTAIEEAIAAGQYAFGENYVQEGVDKIHYLANKPHIP-PLEW----HFIGPLQS 55
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK + F TV R K A LS + L V IQVN E KSGI +
Sbjct: 56 NKSRLVAENFAWCHTVDRLKIAQRLSAQRPADMPALNVLIQVNISDEQSKSGIALAELPA 115
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSMGMTRD 196
+ L++ GLM IP + + + ++ A+ ++ LSMGMT D
Sbjct: 116 LAANISELPNLHLRGLMAIPAPETDYQRQLAVFEQMNQAFLTLKAQYPQMDTLSMGMTDD 175
Query: 197 FELAIASGATSVRIGSGIFGER 218
AIA+G+T VRIG+ IFG R
Sbjct: 176 MPAAIAAGSTLVRIGTAIFGAR 197
>gi|313890724|ref|ZP_07824349.1| pyridoxal phosphate enzyme, YggS family [Streptococcus
pseudoporcinus SPIN 20026]
gi|313120825|gb|EFR43939.1| pyridoxal phosphate enzyme, YggS family [Streptococcus
pseudoporcinus SPIN 20026]
Length = 223
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 110/224 (49%), Gaps = 20/224 (8%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
NK +F+Q + + + A R +++V +VAV+K VD L G AEN++ + +K
Sbjct: 6 NKKSIFEQ-VHKACVAANRLEENVKVVAVTKHVDISTASALLDIGIKHLAENRVDKFLEK 64
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV-- 122
+ L K+ DV IGSLQ KV ++++ D + SL + I++ P+
Sbjct: 65 YEAL-KDRDVTWHLIGSLQRRKVKDVINHVDYFHALD-----SLNLAKEIQKRAAHPINC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++QVN E K G P++ + + ++ + GLM I P + + + + A
Sbjct: 119 FLQVNISGEESKHGFSPDEVNLVLPQIAELDKIRLVGLMTIAPLDADSETIHNIFEQAAQ 178
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ T+LSMGM+ D+E+AI GAT VRIG+ F
Sbjct: 179 LRQELQRQDRKNMPFTELSMGMSNDYEIAIQHGATFVRIGTSFF 222
>gi|91069957|gb|ABE10885.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
clone ASNC2259]
Length = 211
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 111/200 (55%), Gaps = 13/200 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+V+++AVSK S+ I+ + GQ F E+K+QEA +K L+ ++ FIG +QSNK
Sbjct: 16 NVNILAVSKGFKSQDIKTIQNIGQNDFGESKVQEAFEKQFILKDLKQIKWHFIGRIQSNK 75
Query: 87 VSEIVSLFDVIETV-SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP----NQ 141
V +IV F I +V S EK + S+ ++ L + +Q+ + K G+ P +Q
Sbjct: 76 VRKIVQNFKYIHSVDSFEKLQKISSVSFEEKKNPL-IMLQIKLSDDPSKGGLKPELLISQ 134
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTKLSMGMTRDFE 198
K+ ++ + ++GLM I P + K + L + +A +L SMGM+ D+E
Sbjct: 135 WKEI----KELKNITLKGLMTINPRGLSSKENLDLFRKCRSLADSLQLPDCSMGMSGDWE 190
Query: 199 LAIASGATSVRIGSGIFGER 218
AI +G+T +R+GS IFG+R
Sbjct: 191 EAIDAGSTWLRLGSSIFGDR 210
>gi|308493557|ref|XP_003108968.1| hypothetical protein CRE_11760 [Caenorhabditis remanei]
gi|308247525|gb|EFO91477.1| hypothetical protein CRE_11760 [Caenorhabditis remanei]
Length = 244
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 107/222 (48%), Gaps = 19/222 (8%)
Query: 16 NSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDV 74
+ A+ + LVAVSK ++ I + GQ F EN +QE ++K L +K ++
Sbjct: 18 SDAVTSSSATQRCRLVAVSKTKPAELIESCYTQGQRHFGENYVQELEEKSAVLAQKCQEI 77
Query: 75 QLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIK---QSRFLPVYIQVNTG 129
+ FIG +QSNK+ +I + + +ETV EK A L E K S L V++QVNT
Sbjct: 78 RWHFIGQVQSNKIGKICNSPGIWCVETVETEKHARLFDKEWSKYGATSSPLRVFVQVNTS 137
Query: 130 YEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPP----AMGNPKPHFYLL------- 177
E K GI ++ R++ L +G M I P F L
Sbjct: 138 EEENKGGIRISEAPKLAEFIRKECMNLKFDGFMTIGSFDNSHSSGVNPDFEKLFNVRQQW 197
Query: 178 -SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+I + +LSMGM+ DF AI G+TSVR+GS +FG R
Sbjct: 198 AEQIGEAAESVELSMGMSDDFLQAIHQGSTSVRVGSKLFGAR 239
>gi|72383565|ref|YP_292920.1| hypothetical protein PMN2A_1729 [Prochlorococcus marinus str.
NATL2A]
gi|72003415|gb|AAZ59217.1| Protein of unknown function UPF0001 [Prochlorococcus marinus str.
NATL2A]
Length = 213
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 104/205 (50%), Gaps = 9/205 (4%)
Query: 22 KRPKDS----VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
K+ KDS V+L+AVSK IR GQ+ F E++LQEA K I L ++
Sbjct: 10 KKIKDSIPLGVNLLAVSKGHKHDSIRKLSGYGQLDFGESRLQEAILKKIDLSDLTQLRWH 69
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
F+G+LQ NKV ++ FD I +V +S ++ + +++QV + K G
Sbjct: 70 FVGTLQKNKVRRVIKEFDFIHSVDSLPLLERISRISQEEQKSPNIFLQVKFIEDPNKGGF 129
Query: 138 MPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTKLSMGM 193
+ + K + + K +N+ GLM IPP + N L E A L SMGM
Sbjct: 130 LKEELLKSWSNIISLK-NINLIGLMTIPPIVLNAYQRKDLFCECRNFANHLGLKDCSMGM 188
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D++ AI GAT +R+GS +FG+R
Sbjct: 189 SNDWQEAIQGGATWIRLGSLLFGKR 213
>gi|56752042|ref|YP_172743.1| hypothetical protein syc2033_d [Synechococcus elongatus PCC 6301]
gi|81300869|ref|YP_401077.1| hypothetical protein Synpcc7942_2060 [Synechococcus elongatus PCC
7942]
gi|56687001|dbj|BAD80223.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81169750|gb|ABB58090.1| Protein of unknown function UPF0001 [Synechococcus elongatus PCC
7942]
Length = 221
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 98/202 (48%), Gaps = 10/202 (4%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SV L+AVSK + IR A + GQ F EN++QEA K L D+ +G LQSNK
Sbjct: 18 SVQLIAVSKNHPAAAIREAYAAGQRHFGENRVQEAIAKQAELTDLPDLTWHLLGKLQSNK 77
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
+ V FD I +V A L + R + +QV + K+G P + +
Sbjct: 78 ARKAVEHFDWIHSVDSWALAERLDRIAGELGRSPKLCLQVKLLPDPNKAGWDPADLRAEL 137
Query: 147 ILCRQKYQLNVEGLMCIPP----------AMGNPKPHFYLLSEIARECKLTKLSMGMTRD 196
Q Q+ + GLM I P + L + A + +LT+LSMGM+ D
Sbjct: 138 PQLSQLQQVQIRGLMVIAPLGLTAAETQALFAQARTFAAELQQQAPQLRLTELSMGMSSD 197
Query: 197 FELAIASGATSVRIGSGIFGER 218
+ LA+A GAT +R+G+ +FG R
Sbjct: 198 WPLAVAEGATWIRVGTQLFGPR 219
>gi|27467781|ref|NP_764418.1| hypothetical protein SE0863 [Staphylococcus epidermidis ATCC 12228]
gi|251810618|ref|ZP_04825091.1| possible enzyme with a TIM-barrel fold [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876381|ref|ZP_06285248.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus epidermidis
SK135]
gi|293366847|ref|ZP_06613523.1| cell division protein YlmE [Staphylococcus epidermidis
M23864:W2(grey)]
gi|27315325|gb|AAO04460.1|AE016746_250 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|251805778|gb|EES58435.1| possible enzyme with a TIM-barrel fold [Staphylococcus epidermidis
BCM-HMP0060]
gi|281295406|gb|EFA87933.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus epidermidis
SK135]
gi|291319148|gb|EFE59518.1| cell division protein YlmE [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329729987|gb|EGG66378.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus epidermidis
VCU144]
gi|329734427|gb|EGG70740.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus epidermidis
VCU045]
gi|329736249|gb|EGG72521.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus epidermidis
VCU028]
Length = 222
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 99/202 (49%), Gaps = 20/202 (9%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQ--EAKKKWIPLRKEWDVQLRFIGSLQSNK 86
++AV+K V ++ R A G F EN+L + KK+ +P DV+L FIGSLQS K
Sbjct: 28 HVIAVTKYVTIERAREAYKVGIRHFGENRLDGFKEKKESLP----SDVKLHFIGSLQSRK 83
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V +I++ D + R A ++ + + + ++QVN E K GI + F+
Sbjct: 84 VKDIINEVDYFHALDRLSLAKEINK---RANHVIKCFLQVNVSGEESKHGIALEEVNQFI 140
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR-----------ECKLTKLSMGMTR 195
++ + + GLM + P + L E+ T+LSMGM+
Sbjct: 141 NQIKEYENIQIIGLMTMAPLTDDLSYIRNLFKELRHKRNEIQQFNLAHAPCTELSMGMSN 200
Query: 196 DFELAIASGATSVRIGSGIFGE 217
D+++A+ GAT VRIG+ + GE
Sbjct: 201 DYQMAVEEGATFVRIGTKLVGE 222
>gi|317968896|ref|ZP_07970286.1| hypothetical protein SCB02_05105 [Synechococcus sp. CB0205]
Length = 199
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 98/193 (50%), Gaps = 5/193 (2%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
L+AVSK + IR + GQ F E++LQEA K L D+ FIG LQ+NKV
Sbjct: 7 LLAVSKGHPASSIRALVQAGQRSFGESRLQEATAKQQELTDCVDLDWHFIGRLQANKVRP 66
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLP-VYIQVNTGYEIQKSGIMPNQTKDFVIL 148
++ F VI +V A +S + + LP +++QV + K G+ + +
Sbjct: 67 VLKQFSVIHSVDSLSLAERIS-RIAGEEGLLPSIFLQVKLRPDPNKGGLSVEELEREWPR 125
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTKLSMGMTRDFELAIASGA 205
+Q L + GLM + P L +E +A+ L +LSMGM+ D+ A A+G+
Sbjct: 126 LQQLPHLRIVGLMTMAPLEVEGAERAALFAECSALAQRLGLAELSMGMSGDWPEAAAAGS 185
Query: 206 TSVRIGSGIFGER 218
T VR+GS +FG +
Sbjct: 186 TWVRVGSALFGPK 198
>gi|6005842|ref|NP_009129.1| proline synthase co-transcribed bacterial homolog protein [Homo
sapiens]
gi|12230426|sp|O94903|PROSC_HUMAN RecName: Full=Proline synthase co-transcribed bacterial homolog
protein
gi|4126978|dbj|BAA36842.1| Proline synthetase associated [Homo sapiens]
gi|12052758|emb|CAB66551.1| hypothetical protein [Homo sapiens]
gi|15147391|gb|AAH12334.1| Proline synthetase co-transcribed homolog (bacterial) [Homo
sapiens]
gi|49065490|emb|CAG38563.1| PROSC [Homo sapiens]
gi|190689559|gb|ACE86554.1| proline synthetase co-transcribed homolog (bacterial) protein
[synthetic construct]
gi|190690923|gb|ACE87236.1| proline synthetase co-transcribed homolog (bacterial) protein
[synthetic construct]
Length = 275
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 123/246 (50%), Gaps = 34/246 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 11 LGVGCALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 68
Query: 57 KLQE-----AKKKWIPLRKEWDVQLRFIGSLQS---NKVSEIVSLFDVIETVSREKTASL 108
+QE + K + L E ++ FIG LQ NK+ + +LF ++ETV K A
Sbjct: 69 YVQELLEKASNPKILSLCPE--IKWHFIGHLQKQNVNKLMAVPNLF-MLETVDSVKLADK 125
Query: 109 L--SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPP 165
+ S + L V +Q+NT E K G+ P++T V K L GLM I
Sbjct: 126 VNSSWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIG- 184
Query: 166 AMGN-----PKPHFYLLSEIARE-CK-------LTKLSMGMTRDFELAIASGATSVRIGS 212
+ G+ P P F LL + E CK +LSMGM+ DF+ A+ G+T+VRIGS
Sbjct: 185 SFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGS 244
Query: 213 GIFGER 218
IFGER
Sbjct: 245 TIFGER 250
>gi|154338034|ref|XP_001565243.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
gi|134062290|emb|CAM36679.1| putative alanine racemase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 245
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 110/211 (52%), Gaps = 26/211 (12%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V+L+ V K + + GQ +F EN +QE ++K L D FIG LQSNKV
Sbjct: 35 VTLITVGKTKSPACLLSLYNLGQRVFGENYVQELEEKAREL--PGDTVWHFIGHLQSNKV 92
Query: 88 SEI---VSLFDVIETVSREKTASLLS--LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
E+ V VI+T+ +K A+ ++ + + R L VYIQVNT E KSG P +
Sbjct: 93 RELLEGVPNLHVIQTIDSDKLANKVNEGCKKYRSGRSLEVYIQVNTSGEETKSGTEPGEA 152
Query: 143 -----KDFVILCRQKYQLNVEGLMCI--PPAMGNPKPHFYLLS----EIARECKLT---- 187
K V C L ++GLM I P P+ +F L+ E+A+ ++
Sbjct: 153 TVALAKYIVGECPL---LQLKGLMTIGMPDYTSRPE-NFECLTKCREEVAQAVQVAPEDL 208
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AI G+T+VR+GS IFG+R
Sbjct: 209 ELSMGMSGDYVNAIRMGSTTVRVGSSIFGQR 239
>gi|332829127|gb|EGK01791.1| YggS family pyridoxal phosphate enzyme [Dysgonomonas gadei ATCC
BAA-286]
Length = 222
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 105/218 (48%), Gaps = 16/218 (7%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
EN + R ++V LVAVSK IRVA + GQ IF E+++QE +K PL + D+
Sbjct: 5 ENIHSIKDRLPENVKLVAVSKFHPVDAIRVAYNAGQHIFGESRMQEISQKH-PLLPQ-DI 62
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
+ FIG LQ+NKV I+ I +V + S + + + + ++++ E K
Sbjct: 63 EWHFIGHLQTNKVKSIIPYTHTIHSVDSWRLLSEIEKSAARIGKRICCLLEIHIAQEDAK 122
Query: 135 SGIMPNQTKDFVI-----LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK---- 185
G ++ + F+ C+ Y V G+ + F L E K
Sbjct: 123 FGFSFDECRSFLSGNQWRECKFAYIGGVMGMASNIEEESQIRKEFKSLKLFFDEIKNDYF 182
Query: 186 -----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+++SMGM+ D+ +A+ G+T +R+GS IFGER
Sbjct: 183 AEDDCFSEISMGMSGDYTIAVEEGSTMIRVGSSIFGER 220
>gi|224282377|ref|ZP_03645699.1| hypothetical protein BbifN4_00962 [Bifidobacterium bifidum NCIMB
41171]
gi|313139521|ref|ZP_07801714.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|313132031|gb|EFR49648.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
Length = 275
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 33/225 (14%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK------------EWD- 73
SV L+A +K D +I A+ G + EN+ QE K LR+ + D
Sbjct: 48 SVKLLAATKTRDVGEIMAAIDAGIRMIGENRPQEVMAKAEGLRRLCADRGFALGTGDGDT 107
Query: 74 --------VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ IG LQ+NK+ +I+ + IE+V + A ++ + + + V ++
Sbjct: 108 TRPSDAEHIPFHLIGQLQANKIGKILPDVNTIESVDGVELAQRIARRAVARGITVGVLLE 167
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK------PHF----- 174
VN E KSG P D Q + +EGLM I + + H
Sbjct: 168 VNESGEASKSGCDPQAAVDIAAQIAQLDGIRLEGLMTIGAHVDDEATIRACFAHLRGTRD 227
Query: 175 -YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L S T+LSMGMT D LAIA GAT VR+G+ IFGER
Sbjct: 228 TILASRAPGTEHCTELSMGMTHDMALAIAEGATIVRVGTAIFGER 272
>gi|189460455|ref|ZP_03009240.1| hypothetical protein BACCOP_01096 [Bacteroides coprocola DSM 17136]
gi|189432841|gb|EDV01826.1| hypothetical protein BACCOP_01096 [Bacteroides coprocola DSM 17136]
Length = 222
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 103/218 (47%), Gaps = 25/218 (11%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
++A+ P + V LVAVSK ++ I A S GQ IF E+K QE K L K D++ F
Sbjct: 10 VIAELPTN-VRLVAVSKFHPAEAIEAAYSAGQRIFGESKEQELSGKHEQLPK--DIEWHF 66
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NKV I +I K ++ + K R +P ++++ E K G
Sbjct: 67 IGHLQTNKVKYIAPYIAMIHAADSYKLLVEINKQAAKHERTIPCLLEIHIAQEESKYGFT 126
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPH------FYLLSEIARECK---- 185
+ ++ + K N+ CI MG N + F+ L E K
Sbjct: 127 FDSCREMLRTGEWKNLNNI----CIAGVMGMATNTEDETEIANEFHSLKVFFDELKQEFF 182
Query: 186 -----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++SMGM+ D+ +A+ G+T VR+GS IFG+R
Sbjct: 183 SDRPEFKEISMGMSHDYPIAVKEGSTMVRVGSKIFGDR 220
>gi|167537654|ref|XP_001750495.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771035|gb|EDQ84709.1| predicted protein [Monosiga brevicollis MX1]
Length = 208
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 87/165 (52%), Gaps = 22/165 (13%)
Query: 73 DVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
D++ FIG LQ NKV ++ ++ ++ETVS +K A L+ +Q R + V IQVNT
Sbjct: 42 DIEWHFIGHLQRNKVKQLAAVQGLAMVETVSSQKLADALNKTFAEQERTVSVLIQVNTSR 101
Query: 131 EIQKSGIMPNQ----TKDFVILCRQKYQLNVEGLMCI-------PPAMGNP------KPH 173
E K G++ ++ K C L + GLM I P NP +
Sbjct: 102 EENKHGVLEDEVVAVAKHITASC---PALRLCGLMTIGNLEQSLAPEETNPDFETLVRCR 158
Query: 174 FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ SE+ R+ + +LSMGM+ D+E AI G+T+VR+GS IFG R
Sbjct: 159 AAVASELGRDAEELELSMGMSSDYETAIRQGSTNVRVGSTIFGAR 203
>gi|91069819|gb|ABE10751.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
clone ASNC1092]
Length = 211
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 111/200 (55%), Gaps = 13/200 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+V+++AVSK S++I+ + GQ F E+K+QEA +K + L+ + FIG +QSNK
Sbjct: 16 NVNILAVSKGFKSQEIKTIQNIGQNDFGESKVQEAFEKQLTLKDLKQINWHFIGRIQSNK 75
Query: 87 VSEIVSLFDVIETV-SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
+ +IV F I +V S EK + ++ ++ L + +QV + K G P +F
Sbjct: 76 IRKIVQNFKYIHSVDSFEKLQKISNISREEKKNPL-IMLQVKLSDDPTKGGFNP----EF 130
Query: 146 VILCRQKYQ----LNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTKLSMGMTRDFE 198
+IL ++ Q + + GLM I P + K + L + +A +L SMGM+ D+E
Sbjct: 131 LILKWREIQDLKNITLTGLMTINPKGLSSKENSGLFKKCRALADSLQLPDCSMGMSGDWE 190
Query: 199 LAIASGATSVRIGSGIFGER 218
AI +G+T +R+GS IFG R
Sbjct: 191 EAIDAGSTWLRLGSLIFGSR 210
>gi|52785516|ref|YP_091345.1| YlmE [Bacillus licheniformis ATCC 14580]
gi|163119423|ref|YP_078931.2| putative carboxypeptidase YlmE [Bacillus licheniformis ATCC 14580]
gi|319646081|ref|ZP_08000311.1| YlmE protein [Bacillus sp. BT1B_CT2]
gi|52348018|gb|AAU40652.1| YlmE [Bacillus licheniformis ATCC 14580]
gi|145902930|gb|AAU23293.2| putative carboxypeptidase YlmE [Bacillus licheniformis ATCC 14580]
gi|317391831|gb|EFV72628.1| YlmE protein [Bacillus sp. BT1B_CT2]
Length = 231
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 111/228 (48%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ +I + I A R D +S++AV+K V ++ + AL G EN+
Sbjct: 1 MDVKSNLRHINDRINEACIKAGRTPDEISVIAVTKYVSPERAQAALDAGIRHLGENRDTG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
K + + K+ + FIG+LQ+ KV I+ I ++ R A E+ K+++
Sbjct: 61 LLHK-LDVLKDSEPVWHFIGTLQTRKVKAIIDHVSYIHSLDRLSLAD----EIQKRAKKP 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
+ ++QVNT E K G+ + FV + + GLM + P + K F L
Sbjct: 116 IDCFVQVNTSLEPSKHGMAKEEVLPFVKKLSGYENIRIAGLMTMAPFTDDEKAIRSCFRL 175
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L E+ E + ++LSMGM+ D+ +A+ GAT VRIGS + G
Sbjct: 176 LRELRDEVRGLDQWNAPCSELSMGMSNDYAIAVEEGATFVRIGSSLVG 223
>gi|229819925|ref|YP_002881451.1| alanine racemase domain protein [Beutenbergia cavernae DSM 12333]
gi|229565838|gb|ACQ79689.1| alanine racemase domain protein [Beutenbergia cavernae DSM 12333]
Length = 230
Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 13/224 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +++I ++A + R + L+ K +R A+S G + N++QE
Sbjct: 8 LAAARERIADAAGVVGRDPAEIDLLLAVKTQPVAAMRAAISAGGHLLGHNRVQEMAASG- 66
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
P + ++ IG LQSNKV ++ ++TV E A L R L V++QV
Sbjct: 67 PELADLPHEMHLIGHLQSNKVRAALAWATCVQTVDDEALAVRLDRVAGDLGRSLDVFVQV 126
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIARE 183
NT E KSG P + L + G M I + + + L+ + +
Sbjct: 127 NTSGETTKSGTTPEEAHGLARRIGALPSLRLRGFMTIGANSTDVDVVRASYASLARVRDD 186
Query: 184 CKLT---------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +LSMGM+ D E+A+A+GAT VR+G+ +FG R
Sbjct: 187 VVASGDEGTGLARELSMGMSGDLEIAVAAGATMVRLGTAVFGAR 230
>gi|57097863|ref|XP_539969.1| PREDICTED: similar to Proline synthetase co-transcribed bacterial
homolog protein [Canis familiaris]
Length = 275
Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 125/244 (51%), Gaps = 30/244 (12%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 11 LGVGFALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPVEMVIEAYCHGQRTFGEN 68
Query: 57 KLQEA-KKKWIP--LRKEWDVQLRFIGSLQS---NKVSEIVSLFDVIETVSREKTASLLS 110
+QE +K P L +++ FIG LQ NK+ + +LF ++ETV K A ++
Sbjct: 69 YVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLMAVPNLF-MLETVDSVKLADKVN 127
Query: 111 LEMIKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAM 167
K+ L V +QVNT E K G++P++T V K L GLM I +
Sbjct: 128 SSWQKKGSPERLKVMVQVNTSGEQSKHGLLPSETVSMVEHINAKCPSLEFVGLMTIG-SF 186
Query: 168 GN-----PKPHFYLLSEIARE-CK-------LTKLSMGMTRDFELAIASGATSVRIGSGI 214
G+ P P F +L + E CK +LSMGM+ DF+ AI G+T+VR+GS I
Sbjct: 187 GHDLSQGPNPDFQVLLSLREELCKKLSVPPEQVELSMGMSMDFQHAIEVGSTNVRVGSTI 246
Query: 215 FGER 218
FGER
Sbjct: 247 FGER 250
>gi|294782618|ref|ZP_06747944.1| pyridoxal phosphate enzyme, YggS family [Fusobacterium sp.
1_1_41FAA]
gi|294481259|gb|EFG29034.1| pyridoxal phosphate enzyme, YggS family [Fusobacterium sp.
1_1_41FAA]
Length = 223
Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 104/201 (51%), Gaps = 11/201 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR-KEWDVQLRFIGSLQS 84
+ V L+AV+K + I L GQ I ENK+Q K K + K D++ FIG+LQ
Sbjct: 22 EKVKLIAVTKYSSVEDIEEFLKTGQNICGENKVQVVKDKIEYFKNKNTDIKWHFIGNLQK 81
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV I+ I +V++ A ++ + + + + V +++N E K G ++ K
Sbjct: 82 NKVKYIIDDVVAIHSVNKLSLAQEINKKAEQSGKTMDVLLEINVYGEESKQGYSLDELKC 141
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR----------ECKLTKLSMGMT 194
+I + LN+ G+M + P + K + SE+ + + LT+LSMGM+
Sbjct: 142 DIIELKNLKNLNIIGVMTMAPFTDDEKILRMVFSELRKIKDELNKEYFDNNLTELSMGMS 201
Query: 195 RDFELAIASGATSVRIGSGIF 215
D+++A+ G+T +R+G+ IF
Sbjct: 202 NDYKIALQEGSTYIRVGTKIF 222
>gi|195037419|ref|XP_001990158.1| GH18384 [Drosophila grimshawi]
gi|193894354|gb|EDV93220.1| GH18384 [Drosophila grimshawi]
Length = 249
Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 119/239 (49%), Gaps = 30/239 (12%)
Query: 7 LQVFKQKIENSAILAKRPKDSVS----LVAVSKMVDSKKIRVALSCGQVIFAENKLQE-A 61
LQ+ ++IE +LA RPK+ + LVAVSK ++ + A + GQ F EN +QE
Sbjct: 10 LQLVLKRIET--VLASRPKEIKAGKPLLVAVSKTKPAESVIEAYNAGQRHFGENYVQELV 67
Query: 62 KKKWIP--LRKEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIK-- 115
+K P L + D++ IG LQ NK+++++ L +I+TV EK A L K
Sbjct: 68 EKSQHPQILAQCPDIKWHLIGHLQGNKINKVLKLPNLHMIQTVDSEKLADKLDAAWSKLE 127
Query: 116 --QSRFLPVYIQVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMG---- 168
S L + +QVNT E KSGI + + + L G+M I A G
Sbjct: 128 PPPSEPLRILVQVNTSEEDVKSGIDASAAPSLYQYISSNLKHLQPVGIMTIG-AYGFDYS 186
Query: 169 -NPKPHFY-LLSEIARECKLTKL-------SMGMTRDFELAIASGATSVRIGSGIFGER 218
P P F L++ A C+ L SMGM+ D++ AI G+T VR+G+ IFG R
Sbjct: 187 NGPNPDFVSLMAVHADICQANALPAEALQVSMGMSNDYDRAIEMGSTIVRVGTAIFGHR 245
>gi|78213542|ref|YP_382321.1| hypothetical protein Syncc9605_2025 [Synechococcus sp. CC9605]
gi|78198001|gb|ABB35766.1| Protein of unknown function UPF0001 [Synechococcus sp. CC9605]
Length = 220
Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 102/211 (48%), Gaps = 11/211 (5%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA---KKKWIPLRKEWDV 74
A+ A RP S L+AVSK + +R GQ F E+++QEA ++ I L W
Sbjct: 11 ALQAVRPSSS-RLLAVSKGHPAASVRCVAELGQCDFGESRVQEALPKQEALIDLNLRW-- 67
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
FIG LQSNKV +V FDVI +V A +S +++ R V +QV + K
Sbjct: 68 --HFIGRLQSNKVRPVVKAFDVIHSVDSLSLAERVSRIALEEDRRPEVLLQVKFRPDPSK 125
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECKLTKLSM 191
G+ + + L + GLM + P A K F +A + L + SM
Sbjct: 126 GGLSAEELGAIWSDLQALPGLRISGLMTMAPLDMAAEQRKALFSDCRALADQLALAECSM 185
Query: 192 GMTRDFELAIASGATSVRIGSGIFGERPCQT 222
GM+ D++ A +G+T +RIGS +FG R T
Sbjct: 186 GMSTDWKEAAEAGSTWLRIGSALFGPRLVST 216
>gi|227503286|ref|ZP_03933335.1| alanine racemase [Corynebacterium accolens ATCC 49725]
gi|227075789|gb|EEI13752.1| alanine racemase [Corynebacterium accolens ATCC 49725]
Length = 232
Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 24/233 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L K+ I SAI A+ + S L+ V+K ++ I + G AEN+ QEA+
Sbjct: 8 LADNLAATKEHI--SAIAAEHDRPSPQLLVVTKFHPAEDIALLAELGVEDVAENREQEAR 65
Query: 63 KKWIPLRKEWDVQLRF--IGSLQSNKVSEIVSLFDVIETVSREKTASLL------SLEMI 114
K +E D QLRF IG +Q+ K + + + +V K A+ L + E
Sbjct: 66 AKA----QELD-QLRFHMIGQIQTKKANHVARWATSVHSVDSVKLANALDRGVSLAKERG 120
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
++ LP++IQV+ + + G++ + + + L GLM +PP + + F
Sbjct: 121 QRENNLPIFIQVSADGDTSRGGVVREELDEVIEAVEAAEHLEFAGLMVVPPLDADAQEVF 180
Query: 175 YL-------LSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LSE R + KLS GM+ D + AIA+G VR+G+ I G+RP
Sbjct: 181 STVRADVDRLSE--RLGRQLKLSAGMSADMDAAIAAGTDIVRVGTSIMGKRPV 231
>gi|261367976|ref|ZP_05980859.1| pyridoxal phosphate enzyme, YggS family [Subdoligranulum variabile
DSM 15176]
gi|282569960|gb|EFB75495.1| pyridoxal phosphate enzyme, YggS family [Subdoligranulum variabile
DSM 15176]
Length = 240
Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 26/227 (11%)
Query: 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69
++++ +A A R VSL A K +++R + +F EN +QE L
Sbjct: 17 IRERMAEAARRAGRDPAEVSLCAACKTRTVEEVRYSADLPIDLFGENHVQE-------LV 69
Query: 70 KEWDVQL------RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
++ D FIG LQ+NKV+++V +I++V + + + +
Sbjct: 70 EKTDAGAYNGKPGHFIGHLQTNKVNKVVGRAALIQSVDSTRLLDKIEAAAARLGLTQEIL 129
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
I++N G E KSG+ P+ + K L + GLM IPPA + +E+ RE
Sbjct: 130 IEINIGAEESKSGVGPDDLWPLLEAAAAKEHLRLRGLMAIPPADADDDQTRRFFAEM-RE 188
Query: 184 ------------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGM+ D+ +AI GAT VR+G+ I+G R
Sbjct: 189 LLAAASDRHYDNAQMDILSMGMSHDYAMAIEEGATIVRVGTAIYGAR 235
>gi|116075031|ref|ZP_01472291.1| hypothetical protein RS9916_25764 [Synechococcus sp. RS9916]
gi|116067228|gb|EAU72982.1| hypothetical protein RS9916_25764 [Synechococcus sp. RS9916]
Length = 224
Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 95/197 (48%), Gaps = 3/197 (1%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ V L+AVSK + +R GQV F E+++Q+A K L ++ FIG LQ+N
Sbjct: 21 EGVRLLAVSKGHPAAPVRELAELGQVDFGESRVQDALPKQEQLADLVQIRWHFIGRLQAN 80
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV +V F VI +V A + ++ ++QV + K G P D
Sbjct: 81 KVRPVVRAFAVIHSVDSLALAQRMDRIAAEEGVIPEAFLQVKMRPDPAKGGWDPQALTDA 140
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTKLSMGMTRDFELAIA 202
+ + GLM + P + + L ++ +A L + SMGM+ D+ A A
Sbjct: 141 WPQLQALPHVRFTGLMTMAPLGCSQEQRSALFADCRTLADRLGLRECSMGMSGDWPEAAA 200
Query: 203 SGATSVRIGSGIFGERP 219
+GAT VR+GSG+FG RP
Sbjct: 201 AGATWVRVGSGLFGARP 217
>gi|24214180|ref|NP_711661.1| PLP dependent enzyme class III [Leptospira interrogans serovar Lai
str. 56601]
gi|45658124|ref|YP_002210.1| hypothetical protein LIC12276 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|24195079|gb|AAN48679.1| PLP dependent enzyme class III [Leptospira interrogans serovar Lai
str. 56601]
gi|45601366|gb|AAS70847.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 222
Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 110/207 (53%), Gaps = 14/207 (6%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL--RFIG 80
R ++ +L+AVSK +KI+ A+ CG V F EN++QE +K+ K+ + L IG
Sbjct: 18 RSENPPTLIAVSKFQPIEKIKEAIGCGVVHFGENRIQEGIEKFSQWLKDKNTSLVLHHIG 77
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+QS + ++ + V + L +++ + + ++Q N E K G
Sbjct: 78 PVQSGTLRKLFLGYSYAHGVGSVGIVNELLTRALREEKKILYFLQANLTGENTKHGF--- 134
Query: 141 QTKDFVILCRQKYQLN-----VEGLMCIPPAMGN---PKPHFYLLSEIARE-CKLTKLSM 191
+ K+ + + +QK +L+ +EGLM + P+ G+ + F LS+ ++ KLSM
Sbjct: 135 ERKELIEILKQKEKLSNTYCKLEGLMVMGPSDGDLTKTREVFRELSKFKKDYIPEAKLSM 194
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D+++AI G+ VRIGS IFGER
Sbjct: 195 GMSGDYKIAIEEGSDFVRIGSAIFGER 221
>gi|328948141|ref|YP_004365478.1| hypothetical protein Tresu_1273 [Treponema succinifaciens DSM 2489]
gi|328448465|gb|AEB14181.1| protein of unknown function UPF0001 [Treponema succinifaciens DSM
2489]
Length = 238
Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 24/235 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I+ + + R + V L AVSK ++ + AL GQ +F EN++QE+
Sbjct: 6 IAENFESVRNQIKEAEKKSGRKEGCVKLCAVSKFHPAEDVLAALKTGQTLFGENRVQESF 65
Query: 63 KKWIPLRKEWDVQ--LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ + ++ L IGSLQ+NKV + V + I++V RE+ + + + K + +
Sbjct: 66 AKFTQINSVSKIKPDLHIIGSLQTNKVKKAVEIASCIQSVDREELLAEIEKQCAKIEKKI 125
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVIL-----CRQKYQLNV--EGLMCIPPAMGNPK-- 171
V +++TG E KSG V+L C ++ +GLM + P + K
Sbjct: 126 EVLFEIHTG-EDSKSGYKEKS----VLLKSVENCANGIYPHIVPKGLMTMAPFTQDEKLI 180
Query: 172 -PHFYLLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L + E ++ +LSMGM+ D+++AI G+T VRIG+ +FGER
Sbjct: 181 HASFSKLRNLKDELNKSFPSLEINELSMGMSGDYKIAIEEGSTLVRIGTALFGER 235
>gi|218246529|ref|YP_002371900.1| alanine racemase domain-containing protein [Cyanothece sp. PCC
8801]
gi|218167007|gb|ACK65744.1| alanine racemase domain protein [Cyanothece sp. PCC 8801]
Length = 224
Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 103/201 (51%), Gaps = 9/201 (4%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V L+AV+K V I+ A G FAE++LQEA K L+ D+ FIG LQ+NK
Sbjct: 17 HVRLIAVTKQVSIDAIKEAYQAGVRDFAESRLQEALPKQAQLQDLRDISWHFIGHLQANK 76
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
+I+ F I +V K A L+ ++S + +QV + K G ++ +
Sbjct: 77 AKKILEHFHWIHSVDNLKIAQRLNRLAAEESIDPNICLQVKILPDPNKYGWQVSELIADL 136
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHF-------YLLSEIARECKLT--KLSMGMTRDF 197
Q QL ++GLM I P + K L ++I + L+ +LSMGM+ D+
Sbjct: 137 PQLEQCQQLKIQGLMTILPLGLSDKEILAAFQQTKVLETQINNQSTLSLNELSMGMSGDY 196
Query: 198 ELAIASGATSVRIGSGIFGER 218
LAI +GAT +R+G+ IFGER
Sbjct: 197 LLAIQAGATMIRLGTIIFGER 217
>gi|262202905|ref|YP_003274113.1| alanine racemase domain-containing protein [Gordonia bronchialis
DSM 43247]
gi|262086252|gb|ACY22220.1| alanine racemase domain protein [Gordonia bronchialis DSM 43247]
Length = 259
Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 110/235 (46%), Gaps = 21/235 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ +++++ + A RP +V L+ V+K + +R + G F E++ EA
Sbjct: 24 LAARLRAVRERLDAAVAAAHRPAGAVELLVVTKFFPADDVRRLIGLGVRTFGESREPEAG 83
Query: 63 KKWIPLRKEWDVQ----LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI---- 114
+K +R ++ IG++Q+ K + + +V R K A L+
Sbjct: 84 RKIAEVRAGGEITPPPTFDMIGTVQTKKAGGVARWARAVHSVDRRKLAERLADAAQAALD 143
Query: 115 --KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
+ L V +QV+ + + G++ D L++ GLM I P G +
Sbjct: 144 AGDRDDPLGVLLQVSLDGDPHRGGLLEADLADVADAVAGSPALSLRGLMAIAPLAGE-RA 202
Query: 173 HFYLLSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
H+ ++E+AR T+LS GM+ D E+A+A G+T VR+G+ I GERP
Sbjct: 203 HW--MAELARIHADFTRSHPDATELSAGMSGDLEIAVAHGSTCVRVGTAILGERP 255
>gi|188527840|ref|YP_001910527.1| hypothetical protein HPSH_05430 [Helicobacter pylori Shi470]
gi|188144080|gb|ACD48497.1| hypothetical protein HPSH_05430 [Helicobacter pylori Shi470]
Length = 222
Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 106/209 (50%), Gaps = 33/209 (15%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---EWDVQLRFIGSLQS 84
V +VAVSK + I+ +C Q F ENK+Q+ K K L EW IGSLQ
Sbjct: 28 VKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKIKMHSLEHLPLEW----HMIGSLQE 83
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV----YIQVNTGYEIQKSGIMPN 140
NK++ ++S + + + L+L++ K+ L V +QVN+ YE KSG+MP
Sbjct: 84 NKINALLS---LKLALLHSLDSLKLALKIEKRCEILGVNLNALLQVNSAYEESKSGVMPE 140
Query: 141 QTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK----------- 188
+T + + + +L ++GLMCI + K EI + TK
Sbjct: 141 ETLEIYSQISETCKRLKLKGLMCIGAHADDEK-------EIEKSFITTKKLFDRLKNASV 193
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGE 217
LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 194 LSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|46198503|ref|YP_004170.1| hypothetical protein TTC0195 [Thermus thermophilus HB27]
gi|12056565|emb|CAC21426.1| ylmE [Thermus thermophilus]
gi|46196125|gb|AAS80543.1| ylmE [Thermus thermophilus HB27]
Length = 211
Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 8/193 (4%)
Query: 26 DSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ V LVAV+K ++IR L+ G E+++QEA KK L EW +G LQ
Sbjct: 22 EEVRLVAVTKGRSVEEIREKVLAYGTFPLGESRVQEALKKMDLLHAEW----HLVGHLQR 77
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK ++ F ++ ++ + A L K L V ++VN G E QK G++ + +
Sbjct: 78 NK-AKFAPRFALVHSLDSLRLAEALEKVGEKAGVRLKVLVEVNLGREPQKHGVLEEELPE 136
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLSEIARECKLTKLSMGMTRDFELAIA 202
+ R+ L V GLM +PP +P F LSE+A L + SMGM+ D+E A+
Sbjct: 137 LLPRLREMPHLEVLGLMTVPPIGPEAVVRPIFRRLSELADRYGLPERSMGMSDDYEWAVE 196
Query: 203 SGATSVRIGSGIF 215
GAT VR+G +F
Sbjct: 197 EGATLVRVGRALF 209
>gi|242309417|ref|ZP_04808572.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
gi|239523988|gb|EEQ63854.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
Length = 223
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 111/219 (50%), Gaps = 26/219 (11%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-- 70
KIE + I R + + LVAVSK V ++I+ CGQ F ENK+Q+ K L
Sbjct: 14 KIEKARISVDRHR-IIRLVAVSKYVSHQEIQALYECGQRAFGENKVQDLSYKSQTLESLP 72
Query: 71 -EWDVQLRFIGSLQSNKVSEIVSL----FDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
EW FIG+LQSNK++ ++ L F + ++S A+ L + +++ L +Q
Sbjct: 73 LEW----HFIGNLQSNKINALLKLKPFMFHSLHSLS---LANELQKRLERENLTLKTLLQ 125
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGNPK---PHFYLLSEIA 181
+N+ E KSG P + + ++ + + GLM I + K F L S+I
Sbjct: 126 INSAKETTKSGFDPESAYESYLQIQETCPNIKLCGLMSIGAHTQDTKIIQNSFELTSKIY 185
Query: 182 RECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIF 215
KL K LSMGM+ DFELAI G+ VR+GS +F
Sbjct: 186 E--KLQKNGANILSMGMSGDFELAIKCGSNCVRLGSTLF 222
>gi|308234720|ref|ZP_07665457.1| pyridoxal phosphate enzyme, YggS family protein [Gardnerella
vaginalis ATCC 14018]
gi|311113967|ref|YP_003985188.1| YggS family pyridoxal phosphate enzyme [Gardnerella vaginalis ATCC
14019]
gi|310945461|gb|ADP38165.1| YggS family pyridoxal phosphate enzyme [Gardnerella vaginalis ATCC
14019]
Length = 266
Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 105/222 (47%), Gaps = 30/222 (13%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE-----------WDV 74
+SV+L+A +K D +I AL G + EN+ QE K LR + +
Sbjct: 45 ESVTLLAATKTRDVGEIMAALKAGVRVIGENRPQEIVAKAEILRAQAARENLSVGVNGKI 104
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
L IG LQSNK+++++ L + I++V + A +S V ++VN E K
Sbjct: 105 PLYLIGQLQSNKINKVLPLANGIQSVDGIELAQKISARAQNLGLCTDVMLEVNVSGEATK 164
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEIAREC------- 184
SG +P + D + LN+ G M + + + K F L EI R+C
Sbjct: 165 SGCVPERAIDEALAISSLTALNLRGFMTLGARVDDEKIVRSGFAKLREI-RDCVSEQLAQ 223
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
KL +LSMGM+ DF AIA G+T VRIGS IFG R
Sbjct: 224 DHDGNSAKL-ELSMGMSGDFVWAIADGSTMVRIGSAIFGPRA 264
>gi|326475792|gb|EGD99801.1| alanine racemase [Trichophyton tonsurans CBS 112818]
Length = 301
Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 110/233 (47%), Gaps = 47/233 (20%)
Query: 28 VSLVAVSKMVDSKKIRVALS--CGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQ 83
V LVAVSK+ + I S + F EN +QE K K +P W FIG LQ
Sbjct: 68 VRLVAVSKLKPASDILALHSPPTSHLHFGENYMQELLEKSKALPPEIRW----HFIGGLQ 123
Query: 84 SNK----VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF--------------LPVYIQ 125
SNK E+ L+ +E+V EK ASLL +++ F L V++Q
Sbjct: 124 SNKCVTLAREVRGLW-AVESVDTEKKASLLDKGWGERAEFKQKESEAGEPLDRRLRVFVQ 182
Query: 126 VNTGYEIQKSGIMPNQ-TKDFVILCRQK-YQLNVEGLMCI-------PPAMGNPKPHFYL 176
VNT E KSGI P + T + R+K +L ++GLM I N F
Sbjct: 183 VNTSGEENKSGIQPGEPTLELCRFIREKCPRLKLQGLMTIGAIARSKATTPENENEDFAC 242
Query: 177 LSEIARECKLTKLS----------MGMTRDFELAIASGATSVRIGSGIFGERP 219
L + R+ + KLS MGM+ DFE AIA G++ VR+GS IFG RP
Sbjct: 243 LRDT-RDMVVEKLSLKGEDTLELSMGMSNDFEGAIAMGSSQVRVGSTIFGARP 294
>gi|329296971|ref|ZP_08254307.1| alanine racemase domain-containing protein [Plautia stali symbiont]
Length = 235
Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 96/201 (47%), Gaps = 8/201 (3%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ ++L+AVSK + I A++ GQ F EN +QE +K L D+Q FIG LQSN
Sbjct: 27 EEITLLAVSKTKPASAIAEAIAAGQRAFGENYVQEGVEKVAELAAHPDLQWHFIGPLQSN 86
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
K + F TV R + A L+ + L V IQVN E KSGIM
Sbjct: 87 KSRLVAENFAWCHTVDRLRIAQRLNDQRPAALPPLNVLIQVNISDEHSKSGIMLEAVAGL 146
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--------LTKLSMGMTRDF 197
+L + GLM IP + + ++A + + LS+GM+ D
Sbjct: 147 AQQIAALPRLRLRGLMAIPAPEQDYARQLAVCQQMASAFRALQQDYPDVDTLSLGMSDDM 206
Query: 198 ELAIASGATSVRIGSGIFGER 218
+ AIA+G+T VRIG +FG R
Sbjct: 207 DAAIAAGSTMVRIGITVFGAR 227
>gi|18310836|ref|NP_562770.1| hypothetical protein CPE1854 [Clostridium perfringens str. 13]
gi|18145518|dbj|BAB81560.1| conserved hypothetical protein [Clostridium perfringens str. 13]
Length = 219
Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 104/214 (48%), Gaps = 12/214 (5%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
EN ++ +V L+AVSK +++ A G F ENK+QE +K+ + DV
Sbjct: 5 ENLTKFTEKIPSNVQLIAVSKTRTIEEMEEAYEFGIRKFGENKVQEIIRKFDEFHQ--DV 62
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
+ IG LQ+NKV IV +I+++ K + K ++ IQVN G E QK
Sbjct: 63 EWHLIGHLQTNKVKYIVDKVHLIQSLDSIKLLKEIEKVYGKHNKIANTLIQVNIGREEQK 122
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY------LLSEIA----REC 184
GI+ + + + +NV G+M I P + Y L E+ +
Sbjct: 123 YGILEEELDELIEAIEACNNVNVLGIMTIIPKGTEEECRKYFSKTHKLFCELKEKKFKNI 182
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K+ LSMGM+ D+E+A G+ VRIG GIFG+R
Sbjct: 183 KMDILSMGMSGDYEIATEEGSNMVRIGQGIFGKR 216
>gi|299472696|emb|CBN79867.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 252
Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 111/237 (46%), Gaps = 29/237 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-- 60
+ + L+ ++++E + K LVAVSK + ++ A GQ IF EN QE
Sbjct: 18 IADNLEAVRKRVEEVTGEGEAGKPVPRLVAVSKTKPLENLQDAYDAGQRIFGENYAQELI 77
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL---FDVIETVSREKTASLLSLEMIKQS 117
K +P DV FIG LQSNK +V+ V+ET+ K A+ L +
Sbjct: 78 DKSPQMP----DDVVWHFIGHLQSNKAKALVAGVPNLAVLETLDTVKLANKLQSACVSSE 133
Query: 118 RFLP--VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ----LNVEGLMCIPPAMGNPK 171
R P VY+Q++T E K+GI + + L R L ++GLM I G P
Sbjct: 134 RKRPLGVYLQIDTSGEDSKAGIYHSDLDACLSLARHLKDNCPALELKGLMTI----GAPG 189
Query: 172 P----------HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + E + +LSMGM+ D+E AI G+T+VR+GS IFG R
Sbjct: 190 DMECFDRLNACRDAVAGGLGMEAQALELSMGMSGDYEEAIRRGSTNVRVGSTIFGAR 246
>gi|297299225|ref|XP_001089087.2| PREDICTED: proline synthase co-transcribed bacterial homolog
protein [Macaca mulatta]
Length = 310
Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 85/246 (34%), Positives = 125/246 (50%), Gaps = 34/246 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 46 LGVGCALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 103
Query: 57 KLQE-----AKKKWIPLRKEWDVQLRFIGSLQS---NKVSEIVSLFDVIETVSREKTASL 108
+QE + K + L E ++ FIG LQ NK+ + +LF ++ETV K A
Sbjct: 104 YVQELLEKASNPKILSLCPE--IKWHFIGHLQKQNVNKLMAVPNLF-MLETVDSLKLADK 160
Query: 109 LSLEMIKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPP 165
++ K+ L V +Q+NT E K G+ P++T V K L GLM I
Sbjct: 161 VNSSWQKKGSPERLKVMVQINTSGEESKHGLPPSETIAVVEHINAKCPSLEFVGLMTIG- 219
Query: 166 AMGN-----PKPHFYLLSEIARE-CK-------LTKLSMGMTRDFELAIASGATSVRIGS 212
+ G+ P P F LL + +E CK +LSMGM+ DF+ AI G+T+VRIGS
Sbjct: 220 SFGHDLSQGPNPDFQLLLSLRKELCKKLNIPADQVELSMGMSVDFQHAIEVGSTNVRIGS 279
Query: 213 GIFGER 218
IFGER
Sbjct: 280 IIFGER 285
>gi|57866695|ref|YP_188336.1| hypothetical protein SERP0753 [Staphylococcus epidermidis RP62A]
gi|57637353|gb|AAW54141.1| conserved hypothetical protein TIGR00044 [Staphylococcus
epidermidis RP62A]
Length = 222
Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 20/202 (9%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQ--EAKKKWIPLRKEWDVQLRFIGSLQSNK 86
++AV+K V ++ R A G F EN+L + KK+ +P D++L FIGSLQS K
Sbjct: 28 HVIAVTKYVTIERAREAYKAGIRHFGENRLDGFKEKKESLP----SDIKLHFIGSLQSRK 83
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V +I++ D + R A ++ + + + ++QVN E K GI + F+
Sbjct: 84 VKDIINEVDYFHALDRLSLAKEINK---RANHVIKCFLQVNVSGEKSKHGIALEEVNQFI 140
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR-----------ECKLTKLSMGMTR 195
++ + + GLM + P + L E+ T+LSMGM+
Sbjct: 141 NQIKEYENIQIIGLMTMAPLTDDLSYIKNLFKELRHKRNEIQQFNLAHAPCTELSMGMSN 200
Query: 196 DFELAIASGATSVRIGSGIFGE 217
D+++A+ GAT VRIG+ + GE
Sbjct: 201 DYQMAVEEGATFVRIGTKLVGE 222
>gi|312140137|ref|YP_004007473.1| alanine racemase [Rhodococcus equi 103S]
gi|311889476|emb|CBH48793.1| putative alanine racemase [Rhodococcus equi 103S]
Length = 242
Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 102/232 (43%), Gaps = 15/232 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L + ++E + A R V+L+ V+K + +RV G F E++ EA
Sbjct: 7 VASALTRVRARLEAACREAGREPSEVALLPVTKFFPASDVRVLYDLGCRAFGESREPEAS 66
Query: 63 KKWIPLRKEWDV----QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS------LE 112
K + DV + IG LQ NKV +V D + ++ + LS L+
Sbjct: 67 TKVAEFSADPDVTEPVRWHMIGRLQRNKVKSVVRWADTVHSLDSGRLTDALSGAVAAALD 126
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
++SR + V +QV+ + + G+ + L + GLM +PP +P
Sbjct: 127 AGERSRAVEVLVQVSLDGDPSRGGVPVADLESLADRVASAPGLELAGLMAVPPLGADPDA 186
Query: 173 HFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L E+ + LS GMT D E A+ G+T VR+G+ + G RP
Sbjct: 187 AFAQLHEVHADLMRVHPGAGTLSAGMTGDLESAVRHGSTCVRVGTALLGSRP 238
>gi|242373474|ref|ZP_04819048.1| alanine racemase domain protein [Staphylococcus epidermidis
M23864:W1]
gi|242348837|gb|EES40439.1| alanine racemase domain protein [Staphylococcus epidermidis
M23864:W1]
Length = 224
Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 113/232 (48%), Gaps = 25/232 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVS----LVAVSKMVDSKKIRVALSCGQVIFAEN 56
MS+ L +++I N K+S+S ++AV+K V ++ + A G F EN
Sbjct: 1 MSVKQNLNKIEEEISNHI-----EKNSISAQPHVIAVTKYVTIERAKEAYQAGIRHFGEN 55
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+L+ K+K L D FIGSLQS KV ++++ D + R A ++ +
Sbjct: 56 RLEGFKEKKAALPD--DAIFHFIGSLQSRKVKDVINEVDYFHALDRLSLAKEINK---RA 110
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPH 173
+ + ++QVN E K GI ++ +F+ + + + GLM + P + K
Sbjct: 111 NHVISCFVQVNVSGEESKHGIALDEVNEFLNELKDYENIKIVGLMTMAPLTDDASYIKSI 170
Query: 174 FYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
F+ L E + T+LSMGM+ D+++A+ GAT VRIG+ + GE
Sbjct: 171 FHDLRHKKEEIQQFNLEHAPCTELSMGMSNDYQIAVEEGATFVRIGTKLVGE 222
>gi|126138400|ref|XP_001385723.1| hypothetical protein PICST_48387 [Scheffersomyces stipitis CBS
6054]
gi|126093001|gb|ABN67694.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 250
Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 113/226 (50%), Gaps = 34/226 (15%)
Query: 20 LAKRPKD-SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQL 76
LAK+ + V LVAVSK+ S I + G F EN +QE K K +P D++
Sbjct: 30 LAKKHSNVPVRLVAVSKLKPSGDIMALYNAGVRHFGENYVQELIGKSKELP----KDIKW 85
Query: 77 RFIGSLQSNKVSEIV----SLFDVIETVSREKTASLLSLEMIKQSRF----LPVYIQVNT 128
FIG +QS K ++ SLF +ET+ K L +SR + VY+Q+NT
Sbjct: 86 HFIGGMQSGKAKDLAKGVESLF-AVETIDALKKCKQLD---NTRSRLDGAPIEVYLQINT 141
Query: 129 GYEIQKSGI-MPNQTKDF----VILCRQKYQLNVEGLMCI-----PPAMGNPKPHFYLLS 178
E QKSG + N T+ + IL + +L + GLM I G F L
Sbjct: 142 SEEDQKSGYSLSNLTELYETIDYILSDECKKLKLGGLMTIGSFAESHTDGEENEDFSKLV 201
Query: 179 EIAR----ECKLT-KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + + KL +LSMGM+ DFE AI G+TSVR+G+ IFG RP
Sbjct: 202 NLKKIVDEKYKLNLQLSMGMSSDFEQAIKQGSTSVRVGTSIFGARP 247
>gi|157164475|ref|YP_001466918.1| hypothetical protein CCC13826_0125 [Campylobacter concisus 13826]
gi|112800291|gb|EAT97635.1| pyridoxal phosphate enzyme, YggS family [Campylobacter concisus
13826]
Length = 212
Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 119/216 (55%), Gaps = 26/216 (12%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
+KIEN L+K V+LVAVSK V ++R + GQ F EN++QE KK + L+
Sbjct: 10 EKIEN---LSK----DVTLVAVSKNVTCTEVRELYAQGQRNFGENRVQELAKKELELQNF 62
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVI----ETVSREKTASLLSLEMIKQSRF-LPVYIQV 126
D++ IG LQ+NK+++++SL V+ ++ R ++E+ K+ + L +Q+
Sbjct: 63 TDIKWHMIGRLQNNKINQMISLKPVLWQSCDSFER-------AVEVDKRLSYKLDTLLQI 115
Query: 127 NTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIAR 182
N+ E K G+ + N T+ + + + +N++G+M I + PK F L +I
Sbjct: 116 NSADEDTKQGVSVANATEIYERIQSECKNINLKGVMSIGAHVDEPKEVQKSFELTYKIYE 175
Query: 183 ECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
K + SMGM+ DFELAI SG+ +R+G+ ++
Sbjct: 176 SLKPKGASICSMGMSSDFELAIKSGSNMIRLGTMLY 211
>gi|291236536|ref|XP_002738198.1| PREDICTED: proline synthetase co-transcribed homolog [Saccoglossus
kowalevskii]
Length = 298
Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 107/221 (48%), Gaps = 24/221 (10%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP---LRKEWDVQLRFIG 80
PK LVAVSK I+ A GQ F EN + E +K + + D++ ++G
Sbjct: 44 PKVQPRLVAVSKTKAISTIQTAYIHGQRHFGENYVHEIIEKATDPTIINECCDIRWHYVG 103
Query: 81 SLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRF--LPVYIQVNTGYEIQKSG 136
LQ NKV++I+ + ++ +E++ K A +L+ ++ + L V +QVNT E K G
Sbjct: 104 HLQRNKVNKIIGIPNLFMVESLDTPKLADVLNAAWGRKKKVGKLKVMVQVNTSNEASKHG 163
Query: 137 IM---PNQTKDFVILCRQKYQLNVEGLMCIPPAMG----NPKPHFYLLSEIARE-CK--- 185
++L + N GLM I P P F L + E CK
Sbjct: 164 CKLCDAESLAGHILLSCSNLEFN--GLMTIGRVNHELSQGPNPDFQQLVQCREEICKKFM 221
Query: 186 ----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+LSMGM+ DFE AI+ G+T+VR+GS IFG RP T
Sbjct: 222 LDKATVELSMGMSNDFEHAISVGSTNVRVGSAIFGARPDAT 262
>gi|163790533|ref|ZP_02184962.1| hypothetical protein CAT7_08130 [Carnobacterium sp. AT7]
gi|159874136|gb|EDP68211.1| hypothetical protein CAT7_08130 [Carnobacterium sp. AT7]
Length = 223
Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 21/229 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK--- 57
MS+ Q +Q ++ S + R + V ++AV+K V S++ A+ G + AEN+
Sbjct: 1 MSVKENSQKIEQLLDVSLAKSSRKRSDVQVIAVTKSVSSEQAVEAIEEGYLHLAENRPEG 60
Query: 58 LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
L +K+ R W FIG+LQ+ KV ++++ D + R A + + +
Sbjct: 61 LALKQKELSDHRLVW----HFIGNLQARKVKKVINDIDYFHALDRLSLAEEIEK---RAN 113
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP------AMGNPK 171
+ + ++QVN E KSG+ P Q F+ Q ++ + GLM + P + +
Sbjct: 114 KVVLCFVQVNVTGEETKSGVSPEQLDAFITSLSQYSKIKIVGLMTMAPLNASEMVIRSAF 173
Query: 172 PHFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIF 215
H L E ++ L T+LSMGM++DF +A+ GAT VRIG+ F
Sbjct: 174 VHLRKLQESIKDKALPYAPCTELSMGMSKDFTIAVEEGATFVRIGTSFF 222
>gi|149410174|ref|XP_001513258.1| PREDICTED: similar to proline synthetase co-transcribed homolog
(bacterial) [Ornithorhynchus anatinus]
Length = 332
Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 124/242 (51%), Gaps = 28/242 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
LG L+ ++++ +A A+RP+D LVAVSK + + A GQ F EN
Sbjct: 70 GLGLALRAVTERVQQAA--ARRPQDLPAVQPRLVAVSKTKPADMVIEAYIHGQRSFGENY 127
Query: 58 LQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLE 112
+QE +K L +++ FIG LQ + V++++++ ++ +ETV K A ++
Sbjct: 128 VQELLEKASNAKILSSCPEIKWHFIGHLQKHNVNKLITVPNLFMLETVDSVKLADRVNSS 187
Query: 113 MIKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAMGN 169
K+ L V +QVNT E K G++P T V K L GLM I + G+
Sbjct: 188 WQKKGSPERLKVMVQVNTSGEESKHGLLPADTVATVEHINTKCPSLEFVGLMTIG-SFGH 246
Query: 170 -----PKPHFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRIGSGIFG 216
P P F +L + +E KL +LSMGM+ DF+ AI G+T+VRIGS IFG
Sbjct: 247 DLSQGPNPDFQMLVSLRKELCEKLNMSTDSVELSMGMSMDFQHAIEVGSTNVRIGSTIFG 306
Query: 217 ER 218
ER
Sbjct: 307 ER 308
>gi|258511277|ref|YP_003184711.1| alanine racemase domain-containing protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478003|gb|ACV58322.1| alanine racemase domain protein [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 229
Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 108/218 (49%), Gaps = 15/218 (6%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+++ + ++E + + R V +VAV+K + + G AEN+ Q A+ K
Sbjct: 9 RVEEVRARVEAACRRSGRDPAGVRIVAVTKTASPDVLPALHAAGIRDAAENRWQMARDKL 68
Query: 66 I-PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
P D FIG+LQ+NKV +V F + ++ R + A LS E +++ + V +
Sbjct: 69 AHPAASSLDWH--FIGTLQTNKVKYVVPRFAWVHSLDRPELAHALSEEAVRRGVVVNVLV 126
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--HFY------- 175
QVN E QK G+ P + V L + L V GLM + P P+ H +
Sbjct: 127 QVNISGEAQKHGVAPEDAEALVRLAHELPGLAVRGLMTMAPIAERPEDVRHVFAGLRALM 186
Query: 176 --LLSEIARECKLTKLSMGMTRDFELAIASGATSVRIG 211
L S ++ E L +LSMGM+ DFE+A+ GAT +RIG
Sbjct: 187 HELRSRLSLEA-LDQLSMGMSDDFEVAVEEGATMIRIG 223
>gi|238786366|ref|ZP_04630298.1| alanine racemase [Yersinia bercovieri ATCC 43970]
gi|238712724|gb|EEQ04804.1| alanine racemase [Yersinia bercovieri ATCC 43970]
Length = 198
Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 94/203 (46%), Gaps = 23/203 (11%)
Query: 33 VSKMVDSKKIRVALSCGQVIFAENKLQE--------AKKKW-IPLRKEWDVQLRFIGSLQ 83
+SK I A++ GQ F EN +QE A K + PL EW FIG LQ
Sbjct: 1 MSKTKPVTAIEEAIAAGQYAFGENYVQEGVDKIHYFANKPYNHPL--EW----HFIGPLQ 54
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
SNK + F TV R K A LS + + L V IQVN E KSGI +
Sbjct: 55 SNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAELPALNVLIQVNISDEQSKSGITLAELP 114
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSMGMTR 195
+ L++ GLM IP + + + ++ A+ ++ LSMGMT
Sbjct: 115 ALAANISELPNLHLRGLMAIPAPEADYQRQLAVFEQMNQAFLTLKAQYPQMDTLSMGMTD 174
Query: 196 DFELAIASGATSVRIGSGIFGER 218
D AIA+G+T VRIG+ IFG R
Sbjct: 175 DMPAAIAAGSTLVRIGTAIFGAR 197
>gi|325103660|ref|YP_004273314.1| alanine racemase domain protein [Pedobacter saltans DSM 12145]
gi|324972508|gb|ADY51492.1| alanine racemase domain protein [Pedobacter saltans DSM 12145]
Length = 236
Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 110/232 (47%), Gaps = 25/232 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++ K +IE V L+AVSK + I A + GQ IF EN++QE
Sbjct: 1 MSITDNIKRLKNEIETL---------DVKLIAVSKTKPVEDILEAYNAGQRIFGENQVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L K D+Q IG LQ+NKV I +I +V K ++ K +R +
Sbjct: 52 MAEKEASLPK--DIQWHLIGHLQTNKVKYIAPFVSLIHSVDSIKLLKEINKYAEKNNRII 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPK---PHFY 175
+Q+ E K G+ ++ + + ++ NV GLM I N K FY
Sbjct: 110 DCLLQIYIADEDTKFGLGFDEAIELLRSEEFQHMKNVRIVGLMGIASNTENEKQIKEEFY 169
Query: 176 LL---------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L S +E ++SMGM+ D+ +AI G+T VRIG+ IFG+R
Sbjct: 170 ELKTLFEGIKTSFFRKEDSFKEISMGMSSDYNIAIEQGSTMVRIGNDIFGKR 221
>gi|293571728|ref|ZP_06682747.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium E980]
gi|291608185|gb|EFF37488.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium E980]
Length = 225
Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 111/224 (49%), Gaps = 14/224 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + LQ KQ+I++S L R V+LVAV+K V+S + G + AEN++ +
Sbjct: 2 IADNLQKIKQEIQDSCALVHRDPKEVTLVAVTKSVESAQAEELGRAGVMNCAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L +++ IG+LQ KV IV+ D + + A + + K+ L
Sbjct: 62 QKKQDLFDFPEIKWHLIGNLQRRKVKLIVNEIDYFHALDSLRLAEEIQKRLEKE---LSC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP-AMGNPKPH--FYLLSE 179
+I+VN E K GI P++ FV ++ V GLM + P + + H F L E
Sbjct: 119 FIEVNVSGEESKHGISPDELLPFVESLAACTKIKVVGLMTMAPKEASDEQIHKVFGTLKE 178
Query: 180 IAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ +LSMGM++DF++AI GAT +R+G+ +F
Sbjct: 179 LRDLVQAKGYAHAPCNELSMGMSQDFQIAIEEGATFIRVGTALF 222
>gi|11359716|pir||T46722 conserved hypothetical protein [imported] - Leishmania major
Length = 389
Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 111/214 (51%), Gaps = 32/214 (14%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSN 85
V+L+AVSK + + GQ +F EN +QE K K +P W FIG LQSN
Sbjct: 179 VTLIAVSKTKSPACLLNLYNLGQRVFGENYVQELGEKAKELPEDTVW----HFIGHLQSN 234
Query: 86 KVSEI---VSLFDVIETVSREKTASLLS--LEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
KV E+ V V++T+ E AS ++ + R L VYIQVNT E KSG P
Sbjct: 235 KVKELLEGVPNLRVVQTIDSENLASKVNEGCRKYRGGRPLEVYIQVNTSGEETKSGTEPG 294
Query: 141 QTKDFVILCRQKY------QLNVEGLMCI--PPAMGNPKPHFYLLS----EIARECKLT- 187
+ V L KY L ++GLM I P P+ +F L+ ++A+ ++
Sbjct: 295 EAT--VTL--AKYIADECPLLQLKGLMTIGMPDYTSRPE-NFECLTKCREDVAQPVQMAP 349
Query: 188 ---KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AI G+T+VR+G+ IFG+R
Sbjct: 350 EDLELSMGMSGDYVNAIRMGSTAVRVGTSIFGQR 383
>gi|288800037|ref|ZP_06405496.1| pyridoxal phosphate enzyme, YggS family [Prevotella sp. oral taxon
299 str. F0039]
gi|288333285|gb|EFC71764.1| pyridoxal phosphate enzyme, YggS family [Prevotella sp. oral taxon
299 str. F0039]
Length = 225
Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 114/232 (49%), Gaps = 28/232 (12%)
Query: 5 NKLQVFKQ--KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA- 61
NK QV Q +I++S L V LVAVSK ++ IR A GQ IF E++ +E
Sbjct: 2 NKEQVVNQLHQIKDSLPLG------VHLVAVSKFRPAEFIRAAYDAGQRIFGESQEKELS 55
Query: 62 -KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + +P+ D+Q FIG LQ+NKV I +IE+V K ++ + IK +R +
Sbjct: 56 LKVEELPV----DIQWHFIGHLQTNKVKYIARYISLIESVDSLKLLKEINKQAIKNNRVI 111
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIP---PAMGNPKPHFY 175
+ +++ E KSG+ P++ + + K NV GLM + P F
Sbjct: 112 DILLELRVAQEDTKSGLTPDECLALLEEGKWKSLSNVRICGLMTMASYCPDEQQIASEFT 171
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K S GM+ D+++AI GA VRIG+ IFGER
Sbjct: 172 IAHQLFNKIKGEYFSDKEYFKYRSWGMSGDYKIAIEHGANLVRIGTTIFGER 223
>gi|218196101|gb|EEC78528.1| hypothetical protein OsI_18473 [Oryza sativa Indica Group]
gi|222630215|gb|EEE62347.1| hypothetical protein OsJ_17136 [Oryza sativa Japonica Group]
Length = 243
Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 109/225 (48%), Gaps = 26/225 (11%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRK 70
+ + +A + R +SV +VAVSK IR G F EN +QE K +P
Sbjct: 20 RAQQAAARSGRAPESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELIDKASQLPEDI 79
Query: 71 EWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQV 126
EW FIG+LQSNK + V D++E+V +K A+ L + R L V +QV
Sbjct: 80 EW----HFIGNLQSNKARALLAGVPNLDMVESVDDQKIANRLDRVVADLGRKPLKVLVQV 135
Query: 127 NTGYEIQKSGIMPNQ----TKDFVILCRQKYQLNVEGLMCIPPAMGNPKP-HFYLLSEIA 181
NT E K G+ P+ K + C L GLM I + P +F L+
Sbjct: 136 NTSGEESKFGVDPSGCVELAKHVKLGCPN---LVFSGLMTIGMLDYSSTPENFKALANCR 192
Query: 182 RE-CK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E CK +LSMGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 193 KEVCKELGIPEEQCELSMGMSADFEQAIEMGSTNVRVGSTIFGAR 237
>gi|326483235|gb|EGE07245.1| alanine racemase [Trichophyton equinum CBS 127.97]
Length = 301
Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 109/233 (46%), Gaps = 47/233 (20%)
Query: 28 VSLVAVSKMVDSKKIRVALS--CGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQ 83
V LVAVSK+ + I S + F EN +QE K K +P W FIG LQ
Sbjct: 68 VRLVAVSKLKPASDILALHSPPTSHLHFGENYMQELLEKSKALPPEIRW----HFIGGLQ 123
Query: 84 SNK----VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF--------------LPVYIQ 125
SNK E+ L+ +E+V EK ASLL +++ F L V++Q
Sbjct: 124 SNKCVTLAREVRGLW-AVESVDTEKKASLLDKGWGERAEFKQKESEAGEPLDRRLRVFVQ 182
Query: 126 VNTGYEIQKSGIMPNQ-TKDFVILCRQK-YQLNVEGLMCI-------PPAMGNPKPHFYL 176
VNT E KSGI P + T + R+K +L ++GLM I N F
Sbjct: 183 VNTSGEENKSGIQPGEPTLELCRFIREKCPRLKLQGLMTIGAIARSKATTPENENEDFAC 242
Query: 177 LSEIARECKLTKLS----------MGMTRDFELAIASGATSVRIGSGIFGERP 219
L + R+ + KLS MGM+ DFE AIA G+ VR+GS IFG RP
Sbjct: 243 LRDT-RDMVVEKLSLKGEDTLELSMGMSNDFEGAIAMGSNQVRVGSTIFGARP 294
>gi|258577879|ref|XP_002543121.1| hypothetical protein UREG_02637 [Uncinocarpus reesii 1704]
gi|237903387|gb|EEP77788.1| hypothetical protein UREG_02637 [Uncinocarpus reesii 1704]
Length = 297
Score = 87.8 bits (216), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 112/238 (47%), Gaps = 42/238 (17%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALS--CGQVIFAENKLQE--AKKKWIPLRKEW 72
S I A + V LVAVSK+ + I S + F EN LQE K K +P W
Sbjct: 58 SRISAATTGNPVRLVAVSKLKPASDILALHSPPTSHIHFGENYLQELLEKSKILPPEIRW 117
Query: 73 DVQLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLL--------SLEMIKQSRFLP 121
FIG LQSNK ++ V +E+V +K ASLL + + +Q L
Sbjct: 118 ----HFIGGLQSNKCVTLARDVRGLWAVESVDTQKKASLLDKGWGERSNSQEGQQQEPLR 173
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCI---------PPAMGNPK 171
V++QVNT E KSG+ P+ + ++K +L ++GLM I P N
Sbjct: 174 VFVQVNTSGEESKSGVEPSNAVELCRFIQEKCPRLKLQGLMTIGAIARSKATTPETQNED 233
Query: 172 PHFYLLSEI----------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L E E KL +LSMGM+ DFE AIA G+ VR+GS IFG RP
Sbjct: 234 --FVCLRETRDNVCQELGWEGEDKL-ELSMGMSEDFEGAIAMGSNEVRVGSTIFGARP 288
>gi|332522624|ref|ZP_08398876.1| pyridoxal phosphate enzyme, YggS family [Streptococcus porcinus
str. Jelinkova 176]
gi|332313888|gb|EGJ26873.1| pyridoxal phosphate enzyme, YggS family [Streptococcus porcinus
str. Jelinkova 176]
Length = 223
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 112/228 (49%), Gaps = 28/228 (12%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
NK +F+Q + + I A R ++SV +VAV+K VD L G AEN++ + +K
Sbjct: 6 NKKTIFEQ-VHKACIAADRLEESVKVVAVTKHVDISTASALLDNGVKHLAENRVDKFLEK 64
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV-- 122
+ L K+ DV IGSLQ KV ++++ D + SL + I++ P+
Sbjct: 65 YDAL-KDRDVTWHLIGSLQRRKVKDVINRVDYFHALD-----SLNLAKEIQKRADHPINC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++QVN E K G P++ + + ++ + GLM + P + + ++ +I
Sbjct: 119 FLQVNISGEKSKHGFSPDEVNLVLPQIAELNKIRLVGLMTMAPLDADSE----IIHDIFE 174
Query: 183 ECK---------------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ K T+LSMGM+ D+E+AI GAT VRIG+ F
Sbjct: 175 QAKQLRQELQQQDRKNMPFTELSMGMSNDYEIAIQHGATFVRIGTSFF 222
>gi|327298199|ref|XP_003233793.1| alanine racemase [Trichophyton rubrum CBS 118892]
gi|326463971|gb|EGD89424.1| alanine racemase [Trichophyton rubrum CBS 118892]
Length = 301
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 109/233 (46%), Gaps = 47/233 (20%)
Query: 28 VSLVAVSKMVDSKKIRVALS--CGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQ 83
V LVAVSK+ + I S + F EN +QE K K +P W FIG LQ
Sbjct: 68 VRLVAVSKLKPASDILALHSPPTSHLHFGENYMQELLEKSKALPPEIRW----HFIGGLQ 123
Query: 84 SNK----VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF--------------LPVYIQ 125
SNK E+ L+ +E+V EK ASLL +++ F L V++Q
Sbjct: 124 SNKCVTLAREVRGLW-AVESVDTEKKASLLDKGWGERAEFKQKENDANGPSDRRLRVFVQ 182
Query: 126 VNTGYEIQKSGIMPNQ-TKDFVILCRQK-YQLNVEGLMCI-------PPAMGNPKPHFYL 176
VNT E KSGI P + T + R+K +L ++GLM I N F
Sbjct: 183 VNTSGEENKSGIQPGEPTLELCRFIREKCPRLKLQGLMTIGAIARSKATTPENENEDFAC 242
Query: 177 LSEIARECKLTKLS----------MGMTRDFELAIASGATSVRIGSGIFGERP 219
L + R+ + KLS MGM+ DFE AIA G+ VR+GS IFG RP
Sbjct: 243 LRDT-RDMVVEKLSLKGEDTLELSMGMSNDFEGAIAMGSNQVRVGSTIFGARP 294
>gi|257059562|ref|YP_003137450.1| alanine racemase [Cyanothece sp. PCC 8802]
gi|256589728|gb|ACV00615.1| alanine racemase domain protein [Cyanothece sp. PCC 8802]
Length = 224
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 103/201 (51%), Gaps = 9/201 (4%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V L+AV+K V I+ A G FAE++LQEA K L+ D+ FIG LQ+NK
Sbjct: 17 HVRLIAVTKQVSIDAIKEAYQAGVRDFAESRLQEALPKQAQLQDLRDISWHFIGHLQANK 76
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
+I+ F I +V K A L+ ++S + +QV + K G ++ +
Sbjct: 77 AKKILEHFHWIHSVDNLKIAQRLNRLAAEESIDPNICLQVKILPDPNKYGWQVSELIADL 136
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHF-------YLLSEIARECKLT--KLSMGMTRDF 197
Q QL ++GLM I P + K L ++I + L+ +LSMGM+ D+
Sbjct: 137 PQLEQCQQLKIQGLMTILPLGLSDKEILAAFQQTKALETQINNQSTLSLNELSMGMSGDY 196
Query: 198 ELAIASGATSVRIGSGIFGER 218
LAI +GAT +R+G+ IFGER
Sbjct: 197 LLAIRAGATMIRLGTIIFGER 217
>gi|78184224|ref|YP_376659.1| hypothetical protein Syncc9902_0647 [Synechococcus sp. CC9902]
gi|78168518|gb|ABB25615.1| Protein of unknown function UPF0001 [Synechococcus sp. CC9902]
Length = 199
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 98/192 (51%), Gaps = 4/192 (2%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
++AVSK + IR S GQ F E++LQEA +K L + +Q FIG LQ NKV
Sbjct: 1 MLAVSKGHPAASIRAVASLGQQAFGESRLQEAVEK-QALLSDLTLQWHFIGRLQRNKVRG 59
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
+V F VI +V A +S +++ V +QV + K G+ P++
Sbjct: 60 VVKAFSVIHSVDSFALAERVSRIAVEEGCCPDVLLQVRFREDPTKGGMEPSELLSAWPQL 119
Query: 150 RQKYQLNVEGLMCIPPAM--GNPKPHFYL-LSEIARECKLTKLSMGMTRDFELAIASGAT 206
R L + GLM + P G + +L +A + L SMGM+ D+ A+A+G+T
Sbjct: 120 RALPSLRLMGLMTMAPLGLEGEERQTLFLECRSLADQLGLPDCSMGMSGDWTEAVAAGST 179
Query: 207 SVRIGSGIFGER 218
+R+GS +FG+R
Sbjct: 180 WLRLGSAVFGQR 191
>gi|91070350|gb|ABE11267.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
clone HF10-88F10]
Length = 211
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 112/200 (56%), Gaps = 13/200 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+V+++AVSK S++I + GQ F E+K+QEA +K + L+ + FIG +QSNK
Sbjct: 16 NVNILAVSKGFKSQEIMTIQNIGQNDFGESKVQEAFEKQLTLKDLKQINWHFIGRIQSNK 75
Query: 87 VSEIVSLFDVIETV-SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
+ +IV F I +V S EK + ++ ++ + L + +QV + K G P +F
Sbjct: 76 IRKIVQNFKYIHSVDSFEKLQKISNISREEKKKPL-IMLQVKLRDDPTKGGFNP----EF 130
Query: 146 VILCRQKYQ----LNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTKLSMGMTRDFE 198
+IL ++ Q +++ GLM I P + K + L + +A +L SMGM+ D+E
Sbjct: 131 LILKWREIQELKNISLTGLMTINPKGLSSKENLGLFKKCRALADSLQLPDCSMGMSGDWE 190
Query: 199 LAIASGATSVRIGSGIFGER 218
AI +G+T +R+GS IFG R
Sbjct: 191 EAIDAGSTWLRLGSLIFGGR 210
>gi|255019977|ref|ZP_05292051.1| hypothetical protein ACA_2738 [Acidithiobacillus caldus ATCC 51756]
gi|254970636|gb|EET28124.1| hypothetical protein ACA_2738 [Acidithiobacillus caldus ATCC 51756]
Length = 243
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 97/212 (45%), Gaps = 25/212 (11%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+V L+AVSK V + ++R+A G F EN LQEA K L + FIG +Q NK
Sbjct: 40 TVRLLAVSKGVAASRLRLAYGLGLRHFGENYLQEALDKQKALADLDGIVWHFIGRIQRNK 99
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF----LPVYIQVNTGYEIQKSGIMPNQT 142
I F +E++ R A E + +R L V I+VN G E K G+ +
Sbjct: 100 TLAIARHFQWVESIDRALVA-----ERLNHARAGMPPLDVLIEVNAGGESSKGGVGLDAL 154
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPH------------FYLLSEIARECKLTKLS 190
+ L + GLM A+ P+P F LL + + + LS
Sbjct: 155 ESLARAIVTLPHLRLRGLM----ALVRPEPEQADADFATMAAAFQLLQDTFPKQAIDTLS 210
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
MG + D+ A+ GAT +R+G+ IFG R +T
Sbjct: 211 MGTSTDYARALPMGATQIRVGTAIFGPRSQET 242
>gi|149372304|ref|ZP_01891492.1| hypothetical protein SCB49_00842 [unidentified eubacterium SCB49]
gi|149354694|gb|EDM43257.1| hypothetical protein SCB49_00842 [unidentified eubacterium SCB49]
Length = 219
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 101/205 (49%), Gaps = 16/205 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ V+LVAVSK + A GQ IF ENK+QE K + K D+ IG +Q N
Sbjct: 16 EGVTLVAVSKTKPVSDLMEAYEAGQRIFGENKIQEMASKHEEMPK--DIAWHMIGHVQRN 73
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV + ++I V K ++ E K +R + +Q+ E K GI ++
Sbjct: 74 KVKYMAPFVNLIHAVDSLKLLKEINKEAAKNNRTINCLLQIKIAEEDSKFGI--SKADAT 131
Query: 146 VILCRQKYQ----LNVEGLMCIPPAMGNP---KPHFYLLSE----IARECK-LTKLSMGM 193
+L + Q + + GLM + + + F L E I +E + LT+LSMGM
Sbjct: 132 ALLASEIVQDLKNVKIIGLMGMATFTEDKVQIRSEFKSLKEYFNTIKKEHRNLTQLSMGM 191
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ DF LAI G+T VRIGS IFGER
Sbjct: 192 SGDFTLAIEEGSTMVRIGSSIFGER 216
>gi|77735663|ref|NP_001029529.1| proline synthase co-transcribed bacterial homolog protein [Bos
taurus]
gi|115311845|sp|Q3T0G5|PROSC_BOVIN RecName: Full=Proline synthase co-transcribed bacterial homolog
protein
gi|74267697|gb|AAI02406.1| Proline synthetase co-transcribed homolog (bacterial) [Bos taurus]
gi|296472322|gb|DAA14437.1| proline synthetase co-transcribed bacterial homolog protein [Bos
taurus]
Length = 273
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 123/243 (50%), Gaps = 28/243 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A S GQ F EN
Sbjct: 11 LGIGFALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQRTFGEN 68
Query: 57 KLQEA-KKKWIP--LRKEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSL 111
+QE +K P L +++ FIG LQ V++++++ ++ETV K A ++
Sbjct: 69 YVQELLEKASNPQILSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETVDSVKLADKVNS 128
Query: 112 EMIKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAMG 168
K+ L V +Q+NT E K G+ P + V K L GLM I + G
Sbjct: 129 AWQKKGSPERLKVMVQINTSGEASKHGLPPAEMAALVEHINAKCPSLEFVGLMTIG-SFG 187
Query: 169 N-----PKPHFYLLSEIARE-CK-------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ P P F +L + E C+ +LSMGM+ DF+ AI G+T+VRIGS IF
Sbjct: 188 HDLSQGPNPDFQVLLSLREELCRKLGAPPEQVELSMGMSVDFQHAIEVGSTNVRIGSTIF 247
Query: 216 GER 218
GER
Sbjct: 248 GER 250
>gi|224419125|ref|ZP_03657131.1| hypothetical protein HcanM9_07617 [Helicobacter canadensis MIT
98-5491]
gi|253828061|ref|ZP_04870946.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313142632|ref|ZP_07804825.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|253511467|gb|EES90126.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313131663|gb|EFR49280.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
Length = 223
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 110/228 (48%), Gaps = 42/228 (18%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK- 70
+KIE + I R + V LVAVSK +++I+ CGQ F ENK+Q+ +K L
Sbjct: 13 EKIEKARIAVDRHR-IVRLVAVSKYSTTQEIQALYECGQRAFGENKVQDLTQKANTLESL 71
Query: 71 --EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR--------FL 120
EW FIG+LQSNK++ ++ L + SL SLE+ KQ + +L
Sbjct: 72 PLEW----HFIGNLQSNKINALLKLKPFM-------FHSLHSLELAKQLQKRLEQEHIYL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL-----NVE--GLMCIPPAMGNPK-- 171
+Q+N+ E KSG+MP + + YQ+ NV+ GLM I +
Sbjct: 121 KTLLQINSAKESTKSGVMPEEAIEIY------YQILEECPNVKLCGLMSIGAHSTDCNLI 174
Query: 172 ----PHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L E + LSMGM+ DFELAI G+ VR+GS +F
Sbjct: 175 QKSFETTRALFEKLQNFGANTLSMGMSGDFELAIRCGSNCVRLGSTLF 222
>gi|159114248|ref|XP_001707349.1| Hypothetical protein, enzyme with a TIM-barrel fold [Giardia
lamblia ATCC 50803]
gi|157435453|gb|EDO79675.1| hypothetical protein, enzyme with a TIM-barrel fold [Giardia
lamblia ATCC 50803]
Length = 230
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 101/201 (50%), Gaps = 16/201 (7%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-EWDVQLRFIGSLQSNKVS 88
L+AVSK + I A + GQ +F EN +QE KK ++ D++ FIG LQ+NK
Sbjct: 20 LIAVSKTKPVEAILEAYAAGQRLFGENYVQELVKKAEAVQGVASDIEWHFIGHLQTNKAR 79
Query: 89 EIVSLFD-VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
++ + + V++TV ++ A LS + L V IQ+N E+ KSG +
Sbjct: 80 DVAFIPNCVVQTVDSDRLARRLSELRPDELGPLRVMIQINISGELTKSGCTVEDAIELAQ 139
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE-------IARECKLTK---LSMGMTRDF 197
L +L + GLM I G P Y I + KL + LSMGM+ D+
Sbjct: 140 LISALPRLRLIGLMTI----GAPDASEYSFRALVDARNVIEQAVKLEEKLELSMGMSSDY 195
Query: 198 ELAIASGATSVRIGSGIFGER 218
+LA+ GA VR+GS IFGER
Sbjct: 196 QLAVKMGADYVRVGSAIFGER 216
>gi|313675306|ref|YP_004053302.1| alanine racemase domain protein [Marivirga tractuosa DSM 4126]
gi|312942004|gb|ADR21194.1| alanine racemase domain protein [Marivirga tractuosa DSM 4126]
Length = 220
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 100/204 (49%), Gaps = 16/204 (7%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
LVAVSK ++ + A GQ ENK+QE K L K D++ IG LQ NKV
Sbjct: 18 HLVAVSKTKPNEDLMAAYDAGQRALGENKVQEMTDKAEVLPK--DIEWHMIGHLQRNKVK 75
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI- 147
I +I +V + ++ + K R +PV +Q++ E K G+ ++ + +
Sbjct: 76 YIAPFVHLIHSVDSVRLLKEINKQGKKIDRVIPVLLQIHIAEEENKYGLDEDELHELLSS 135
Query: 148 -LCRQKYQLNVEGLMCIPPAMGNP----------KPHFYLLSEIARECKLT--KLSMGMT 194
++ + V+GLM + + K F +E + KL +LSMGM+
Sbjct: 136 EAFKEMNHVAVQGLMGMATFTDDTEKIRREFKSLKKLFDKTAEQYNDEKLNLKELSMGMS 195
Query: 195 RDFELAIASGATSVRIGSGIFGER 218
D+E+AI G+T VRIGS IFGER
Sbjct: 196 GDYEIAIEEGSTMVRIGSKIFGER 219
>gi|291519441|emb|CBK74662.1| Predicted enzyme with a TIM-barrel fold [Butyrivibrio fibrisolvens
16/4]
Length = 164
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 17/160 (10%)
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
D+ IG LQ NKV IV +I +V + A ++++ K+ +P+ I+VN E
Sbjct: 4 DIDWHLIGHLQRNKVKYIVDQVKLIHSVDSYRLAEEINIQAKKKGVVVPILIEVNAANEA 63
Query: 133 QKSGIMPNQTKDFVILCRQKYQLN---VEGLMCIPPAMGNPKPHFYLLSEIA-------- 181
K G+ +T LC + L+ + GLM I P + P+ + + +I
Sbjct: 64 TKFGVKVEETAQ---LCEEIAHLDAVHIMGLMTIAPNVVVPEENRAIFHKIKALSVDIAS 120
Query: 182 ---RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGMT DFE+AI GAT VR+G+ IFGER
Sbjct: 121 KNIDNVDMRILSMGMTNDFEVAIEEGATHVRVGTAIFGER 160
>gi|255554799|ref|XP_002518437.1| proline synthetase associated protein, putative [Ricinus communis]
gi|223542282|gb|EEF43824.1| proline synthetase associated protein, putative [Ricinus communis]
Length = 270
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 108/221 (48%), Gaps = 16/221 (7%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
Q+++ +A + R + +VAVSK I G F EN +QE +K L +
Sbjct: 46 QRVQQAAERSGRGAQQIRVVAVSKTKPVSLIHQVYDAGHRCFGENYVQELVEKAPQLPE- 104
Query: 72 WDVQLRFIGSLQSNKVSEIVSL---FDVIETVSREKTASLLSLEMIKQSR-FLPVYIQVN 127
D++ FIG+LQSNKV +++ V+E+V +K A+ L + R L V +QVN
Sbjct: 105 -DIEWHFIGNLQSNKVKPLLAAVPNLAVVESVDDQKIANHLDRAVGNLGRKPLKVLVQVN 163
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGNPKP-HFYLLSEIARE-C 184
T E K G+ P + Q L GLM I + P +F L+ E C
Sbjct: 164 TSGEESKYGVEPAGCVELAKHVTQSCPNLEFCGLMTIGMLDYSSTPENFKTLANCRSEVC 223
Query: 185 KL-------TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K +LSMGM+ DFE AI G+T+VRIGS IFG R
Sbjct: 224 KTLGIPEEQCELSMGMSNDFEQAIEMGSTNVRIGSTIFGPR 264
>gi|302496453|ref|XP_003010228.1| hypothetical protein ARB_03580 [Arthroderma benhamiae CBS 112371]
gi|291173769|gb|EFE29588.1| hypothetical protein ARB_03580 [Arthroderma benhamiae CBS 112371]
Length = 301
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 109/233 (46%), Gaps = 47/233 (20%)
Query: 28 VSLVAVSKMVDSKKIRVALS--CGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQ 83
V LVAVSK+ + I S + F EN +QE K K +P W FIG LQ
Sbjct: 68 VRLVAVSKLKPASDILALHSPPTSHLHFGENYMQELLEKSKALPPEIRW----HFIGGLQ 123
Query: 84 SNK----VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF--------------LPVYIQ 125
SNK E+ L+ +E+V EK ASLL +++ F L V++Q
Sbjct: 124 SNKCVTLAREVRGLW-AVESVDTEKKASLLDKGWGERAEFKQKENGANEPPDRRLRVFVQ 182
Query: 126 VNTGYEIQKSGIMPNQ-TKDFVILCRQK-YQLNVEGLMCI-------PPAMGNPKPHFYL 176
VNT E KSGI P + T + R+K +L ++GLM I N F
Sbjct: 183 VNTSGEENKSGIQPGEPTLELCRFIREKCPRLKLQGLMTIGAIARSKATTPENENEDFAC 242
Query: 177 LSEIARECKLTKLS----------MGMTRDFELAIASGATSVRIGSGIFGERP 219
L + R+ + KLS MGM+ DFE AIA G+ VR+GS IFG RP
Sbjct: 243 LRDT-RDMVVEKLSLKGEDTLELSMGMSNDFEGAIAMGSNQVRVGSTIFGARP 294
>gi|159038975|ref|YP_001538228.1| alanine racemase domain-containing protein [Salinispora arenicola
CNS-205]
gi|157917810|gb|ABV99237.1| alanine racemase domain protein [Salinispora arenicola CNS-205]
Length = 248
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 102/233 (43%), Gaps = 21/233 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + ++ ++ A R VS+VAV+K + + + G EN+ QEA
Sbjct: 16 LAAGLTRVRTRVADACAAAGRDLGEVSMVAVTKTYPASDVIALVGLGATEVGENRDQEAS 75
Query: 63 KKWIPLRK-----EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS-LEMIKQ 116
K + W FIG LQ NK +V DV+++V + A L +
Sbjct: 76 AKATEVAAAGVTPRW----HFIGQLQRNKARSVVRYADVVQSVDSVRLARALDRASATVR 131
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQT------KDFVILCRQKYQLNVEGLMCIPPAMGNP 170
R L V++QV+ + G +P + + L + GLM + P P
Sbjct: 132 DRPLEVFVQVSIDGAGARGGALPGSADPEAGLEPVAEMVAGMDGLRLAGLMAVAPLGWEP 191
Query: 171 KPHFYLLSEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ F L+E+A R + T LS GM+ D E+AI GAT VR+GS + G R
Sbjct: 192 ERAFARLAEVAAGFRVRHPQATLLSAGMSGDLEVAIRYGATHVRVGSALLGMR 244
>gi|326511339|dbj|BAJ87683.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326532008|dbj|BAK01380.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 243
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 108/223 (48%), Gaps = 22/223 (9%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+ + +A R +SV +VAVSK IR G F EN +QE K L +
Sbjct: 20 RAQQAAARTGRSPESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELIDKAPQLPE-- 77
Query: 73 DVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQVNT 128
D++ FIG+LQSNK + V D++E+V EK A+ L + R L V +QVNT
Sbjct: 78 DIEWHFIGNLQSNKAKALLAGVPNLDMVESVDDEKIANRLDRVVADLGRKPLKVLVQVNT 137
Query: 129 GYEIQKSGIMPNQ----TKDFVILCRQKYQLNVEGLMCIPPAMGNPKP-HFYLLSEIARE 183
E K G+ P+ K + C L GLM I + P +F L+ +E
Sbjct: 138 SGEESKFGVDPSGCVGLAKHVKLSCPN---LVFSGLMTIGMLDYSSTPENFKALTSCRKE 194
Query: 184 C--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +LSMGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 195 VCDELGIPEEQCELSMGMSADFEQAIEMGSTNVRVGSTIFGAR 237
>gi|315041367|ref|XP_003170060.1| YggS family pyridoxal phosphate enzyme [Arthroderma gypseum CBS
118893]
gi|311345094|gb|EFR04297.1| YggS family pyridoxal phosphate enzyme [Arthroderma gypseum CBS
118893]
Length = 296
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 109/234 (46%), Gaps = 47/234 (20%)
Query: 27 SVSLVAVSKMVDSKKIRVALS--CGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSL 82
SV LVAVSK+ + I S + F EN +QE K K +P W FIG L
Sbjct: 63 SVRLVAVSKLKPASDILALHSPPTSHLHFGENYMQELLEKSKALPPEIRW----HFIGGL 118
Query: 83 QSNK----VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF--------------LPVYI 124
QSNK E+ L+ +E+V EK ASLL +++ F L V++
Sbjct: 119 QSNKCVTLAREVRGLW-AVESVDTEKKASLLDKGWGERAEFKDKDSDADEHANRPLRVFV 177
Query: 125 QVNTGYEIQKSGIMPNQ-TKDFVILCRQK-YQLNVEGLMCI-------PPAMGNPKPHFY 175
QVNT E KSGI P + T + R+K +L ++GLM I N F
Sbjct: 178 QVNTSGEENKSGIQPGEPTLELCRYIREKCPRLKLQGLMTIGAIARSKATTPENENEDFA 237
Query: 176 LLSEIARECKLTKLS----------MGMTRDFELAIASGATSVRIGSGIFGERP 219
L + R+ + KLS MGM+ DFE AI G+ VR+GS IFG RP
Sbjct: 238 CLRDT-RDMVVEKLSLKGEDTLELSMGMSNDFEGAITMGSNQVRVGSTIFGARP 290
>gi|262341190|ref|YP_003284045.1| alanine racemase domain-containing protein [Blattabacterium sp.
(Blattella germanica) str. Bge]
gi|262272527|gb|ACY40435.1| alanine racemase domain-containing protein [Blattabacterium sp.
(Blattella germanica) str. Bge]
Length = 218
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 107/217 (49%), Gaps = 17/217 (7%)
Query: 14 IENSAILAKR--PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
IEN +R PK+ + +VAVSK + I G F EN +QE K+ L K
Sbjct: 2 IENRFFSIRRLIPKN-IKIVAVSKNQNVSSIEKLYKLGHKDFGENYVQEMMDKYKKLPK- 59
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
D++ IG +QSNK+ I+ +I +V + + L++ +K R + +Q+ E
Sbjct: 60 -DIRWHMIGRIQSNKLKYIIPFIHLIHSVQKLEQIQLINKIALKYGRRINCLLQIKICNE 118
Query: 132 IQKSGIMPNQTKDFVILCRQKYQ----LNVEGLMCIPPAMGNPKPH--FYLLSEIARECK 185
KSGI + D IL + YQ + + G+M + K H F L + +C+
Sbjct: 119 KSKSGITDQEFYD--ILENKTYQSMKNVKIVGIMGMASFQELTKIHNEFGYLRKFYDKCQ 176
Query: 186 ----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+RD+ +AI G+T VR+G+ IFG R
Sbjct: 177 KKYGFYILSMGMSRDYNIAIQYGSTIVRLGTSIFGNR 213
>gi|312889194|ref|ZP_07748751.1| alanine racemase domain protein [Mucilaginibacter paludis DSM
18603]
gi|311298356|gb|EFQ75468.1| alanine racemase domain protein [Mucilaginibacter paludis DSM
18603]
Length = 229
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 20/205 (9%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
LVAVSK ++ ++ A GQ IF EN +QE +K+ L K D+Q IG LQ+NKV
Sbjct: 21 LVAVSKTKPAEDLQEAYDAGQRIFGENMVQELVEKYEKLPK--DIQWHLIGHLQTNKVKY 78
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
I +IE+V K ++ + K R + +QV E K G+ ++ + +L
Sbjct: 79 IAPFISLIESVDSLKLLQEINKQAEKNKRVIDCLLQVYIADEETKFGLSYDELIE--LLR 136
Query: 150 RQKY----QLNVEGLMCIPPAMGNPK---PHFYLLSEIARECKLT---------KLSMGM 193
+Y + V GLM I N K F+ L + K++ +LSMGM
Sbjct: 137 SDEYTALKNIRVVGLMGIATNTDNEKQINDEFHELRVLFDGIKVSFFRKDEFFKELSMGM 196
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D+++A+ G+T +R+GS IFG+R
Sbjct: 197 SSDYKIALEQGSTMIRVGSTIFGQR 221
>gi|225713478|gb|ACO12585.1| Proline synthetase co-transcribed bacterial homolog protein
[Lepeophtheirus salmonis]
Length = 228
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 104/216 (48%), Gaps = 14/216 (6%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
EN + + ++V+LVAVSK I+ A GQ +F ENK+QE K+ L K D+
Sbjct: 11 ENLLQIKNKLPENVTLVAVSKTKPIADIQEAYDAGQRVFGENKIQEMVTKFDALPK--DI 68
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
+ IG LQ NKV + D+I V KT + + K +R + +Q E K
Sbjct: 69 EWHMIGHLQRNKVKYMAHFVDLIHGVDSFKTLKEIDKQAKKHNRVIKCLLQARIAKEETK 128
Query: 135 SGIMPNQTKDFVILCRQKY--QLNVEGLMCIPPAMGNP---KPHF-----YLLSEIARE- 183
G+ ++ + + +N+ GLM + N + F + ++I +
Sbjct: 129 FGLSFSEIGEIISSEEISELKNINIVGLMGMATFTDNQEQLQEEFVSLKRFFDAQITEKD 188
Query: 184 -CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
C L LS GM+ D+ LAI +G+T VRIGS IFG R
Sbjct: 189 NCNLQTLSTGMSGDYSLAIENGSTMVRIGSAIFGVR 224
>gi|262282739|ref|ZP_06060507.1| YggS family pyridoxal phosphate enzyme [Streptococcus sp.
2_1_36FAA]
gi|262262030|gb|EEY80728.1| YggS family pyridoxal phosphate enzyme [Streptococcus sp.
2_1_36FAA]
Length = 223
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 18/223 (8%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
NK QVF E + A RP++SVS+VAV+K VDS + + G EN++ + +K
Sbjct: 6 NKDQVFAAVAEATK-KANRPENSVSIVAVTKYVDSSTAKELVKTGVNHIGENRVDKFLEK 64
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF-LPVY 123
+ L+ E ++ IG+LQ KV E+++ D + K L+ E+ K++ + +
Sbjct: 65 YQYLKDE-ELTWHLIGTLQRRKVKEVINFVDYFHALDSLK----LAEEIEKRAEHTIKCF 119
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEI 180
+QVN E K G ++ + + + L + G+M + P + F E+
Sbjct: 120 LQVNVSGEESKHGFAVDEIEAVLPALEKLEHLEIVGIMTMAPIDAGEEDLEKIFQATHEL 179
Query: 181 ARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + +++SMGM+RDF AIA+G+T VRIG+ F
Sbjct: 180 QKKLQDKQITNMPFSEISMGMSRDFATAIANGSTFVRIGTSFF 222
>gi|238795052|ref|ZP_04638645.1| alanine racemase [Yersinia intermedia ATCC 29909]
gi|238725600|gb|EEQ17161.1| alanine racemase [Yersinia intermedia ATCC 29909]
Length = 192
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 87/188 (46%), Gaps = 11/188 (5%)
Query: 42 IRVALSCGQVIFAENKLQEAKKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE 98
I A++ GQ F EN +QE K + D++ FIG LQSNK + F
Sbjct: 4 IEEAIAAGQYAFGENYVQEGVDKIHYFANNAHSTDLEWHFIGPLQSNKSRLVAENFAWCH 63
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
TV R K A LS + L + IQVN E KSGI + + L++
Sbjct: 64 TVDRLKIAQRLSTQRPAAMAALNILIQVNISDEQSKSGIALTELPALAASISELPNLSLR 123
Query: 159 GLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSMGMTRDFELAIASGATSVRI 210
GLM IP + + + ++ A ++ LSMGMT D AI++G+T VRI
Sbjct: 124 GLMAIPAPESDYQRQLVVFEQMNQAFLTLKASYPQIDTLSMGMTDDMAAAISAGSTLVRI 183
Query: 211 GSGIFGER 218
G+ IFG R
Sbjct: 184 GTAIFGTR 191
>gi|315658525|ref|ZP_07911397.1| YggS family pyridoxal phosphate enzyme [Staphylococcus lugdunensis
M23590]
gi|315496854|gb|EFU85177.1| YggS family pyridoxal phosphate enzyme [Staphylococcus lugdunensis
M23590]
Length = 222
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 115/235 (48%), Gaps = 31/235 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDS-VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M + + L +Q+IE+ K DS ++++AV+K V ++ + A G F EN+L+
Sbjct: 1 MDVKSNLAHIQQEIESHK--KKSTIDSHINVIAVTKYVTIERAKEAFDAGLRHFGENRLE 58
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
KK +P D + FIGSLQS KV ++++ D + R A ++ + +
Sbjct: 59 GFLEKKAALP----EDAVMHFIGSLQSRKVKDVINEVDYFHALDRMSLAKEINK---RAN 111
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
+ ++QVN E K GI N+ F+ + + + GLM + P + + +
Sbjct: 112 HTISCFLQVNVSGEASKHGIHLNEVDKFIDDIKAYENIKIVGLMTMAPFTDDTQ----YI 167
Query: 178 SEIARECKL---------------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E+ ++ +L T+LSMGM+ D+ +A+ GAT +RIG+ + GE
Sbjct: 168 QELFKKLRLKRDDIQQRQLTYAPCTELSMGMSNDYPVAVEEGATYIRIGTKLVGE 222
>gi|114778110|ref|ZP_01452997.1| hypothetical protein SPV1_00592 [Mariprofundus ferrooxydans PV-1]
gi|114551528|gb|EAU54082.1| hypothetical protein SPV1_00592 [Mariprofundus ferrooxydans PV-1]
Length = 227
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 10/196 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQS 84
D VS++A+SK ++ + GQ F E++ Q + + LR W D Q IG LQ
Sbjct: 29 DGVSMLAISKYAPDSAVQALIDQGQRCFGESRPQALRDR--ALR--WPDCQWHMIGPLQK 84
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK + + + TA+ ++ + R LPV IQVN + G+ P +
Sbjct: 85 NKAKYVARHAAMWHSCEDIDTAAAVARHL--DGRRLPVLIQVNIAANPAQHGVNPAALQT 142
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC---KLTKLSMGMTRDFELAI 201
F L + GLM + P G+ F + ++ E + LSMGM+ D+ A+
Sbjct: 143 FAAELNAIDGLELRGLMAMAPLDGDVGEAFTAMRDLRDELFGGSVGLLSMGMSHDYRAAV 202
Query: 202 ASGATSVRIGSGIFGE 217
A+GA VR+GS +FG+
Sbjct: 203 AAGANMVRLGSTLFGD 218
>gi|326526139|dbj|BAJ93246.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 108/223 (48%), Gaps = 22/223 (9%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+ + +A R +SV +VAVSK IR G F EN +QE K L +
Sbjct: 20 RAQQAAARTGRSPESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELIDKAPQLPE-- 77
Query: 73 DVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQVNT 128
D++ FIG+LQSNK + V D++E+V EK A+ L + R L V +QVNT
Sbjct: 78 DIEWHFIGNLQSNKAKALLAGVPNLDMVESVDDEKIANRLDRVVADLGRKPLKVLVQVNT 137
Query: 129 GYEIQKSGIMPNQ----TKDFVILCRQKYQLNVEGLMCIPPAMGNPKP-HFYLLSEIARE 183
E K G+ P+ K + C L GLM I + P +F L+ +E
Sbjct: 138 SGEESKFGVDPSGCVGLAKHVKLSCPN---LVFSGLMTIGMLDYSSTPENFKALTSCRKE 194
Query: 184 C--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +LSMGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 195 VCDELGIPEEQCELSMGMSADFEQAIEMGSTNVRVGSTIFGAR 237
>gi|325674381|ref|ZP_08154069.1| alanine racemase domain protein [Rhodococcus equi ATCC 33707]
gi|325554641|gb|EGD24315.1| alanine racemase domain protein [Rhodococcus equi ATCC 33707]
Length = 242
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 102/232 (43%), Gaps = 15/232 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L + +++ + A R V+L+ V+K + +RV G F E++ EA
Sbjct: 7 VASALTRVRARLDAACRDAGREPSEVALLPVTKFFPASDVRVLYDLGCRAFGESREPEAS 66
Query: 63 KKWIPLRKEWDV----QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS------LE 112
K + DV + IG LQ NKV +V D + ++ + LS L+
Sbjct: 67 TKVAEFSADPDVTEPVRWHMIGRLQRNKVKSVVRWADTVHSLDSGRLTDALSGAVAAALD 126
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
++SR + V +QV+ + + G+ + L + GLM +PP +P
Sbjct: 127 AGERSRAVEVLVQVSLDGDPSRGGVPVADLESLADRVASAPGLELAGLMAVPPLGADPDA 186
Query: 173 HFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L E+ + LS GMT D E A+ G+T VR+G+ + G RP
Sbjct: 187 AFAQLHEVHADLMRVHPGAGTLSAGMTGDLESAVRHGSTCVRVGTALLGSRP 238
>gi|218283235|ref|ZP_03489296.1| hypothetical protein EUBIFOR_01884 [Eubacterium biforme DSM 3989]
gi|218215990|gb|EEC89528.1| hypothetical protein EUBIFOR_01884 [Eubacterium biforme DSM 3989]
Length = 205
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 13/208 (6%)
Query: 16 NSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQ 75
N ++ + ++VAVSK ++I G F EN++QE K+ P + W +
Sbjct: 2 NKELIEELKAQDFNVVAVSKTRTKEEIDEVAKMGLTTFGENRVQEFIDKYDP-KYTWHI- 59
Query: 76 LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKS 135
IG LQ+NKV IV DVIE++ K A + + K V +++ + K+
Sbjct: 60 ---IGHLQTNKVKYIVGKVDVIESLDSLKLAEEIEKQANKHGIIQKVLVELKISEDPNKT 116
Query: 136 GIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN--------PKPHFYLLSEIARECKLT 187
G K+F+ ++ + ++G+MC+ N + H L + ++
Sbjct: 117 GYPFKDAKNFISQLQEFKHIQIKGIMCVASKTDNQELVESEFEQMHTLYLELKEQYSEID 176
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIF 215
LSMGM++D++LA+ G+ +VRIG IF
Sbjct: 177 TLSMGMSQDYKLAVKHGSNTVRIGRAIF 204
>gi|209527933|ref|ZP_03276419.1| alanine racemase domain protein [Arthrospira maxima CS-328]
gi|209491623|gb|EDZ91992.1| alanine racemase domain protein [Arthrospira maxima CS-328]
Length = 223
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 100/205 (48%), Gaps = 17/205 (8%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V LVAV+K V + IR+A G F EN++QEA+ K + L+ D+ IG LQSNK
Sbjct: 20 VRLVAVTKTVSVEAIRLAYEAGVRDFGENRVQEAEAKQLQLQDLRDITWHLIGHLQSNKA 79
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG-IMPNQTKDFV 146
+ ++ FD + +V K A L +QSR + +QV + K G +P D
Sbjct: 80 ATAIAHFDWLHSVDSWKLAQRLDRLAREQSRCPRICLQVKILPDPNKYGWTVPELLADLP 139
Query: 147 IL--CRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARE--------CKLTKLSMGM 193
L C LN++GLM IPP + F ++A E K+ +LSM
Sbjct: 140 QLNACE---SLNIQGLMTIPPQGLTETQTRSVFEKTRQLAAEIGAQNWSHIKMAELSMVC 196
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ LA+ +GAT +R G IFG R
Sbjct: 197 QGTYLLAVEAGATMIRPGQIIFGPR 221
>gi|116610245|gb|ABK02969.1| Protein of unknown function UPF0001 [Arthrobacter sp. FB24]
Length = 242
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 17/234 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ +G++L +++I + A RP + L+ V+K + +R + G EN+ QE
Sbjct: 10 IDIGSRLAAVRRRITAATEAAGRPDNPPELIVVTKFHPAADVRRLAALGVTDVGENRDQE 69
Query: 61 AKKKWIPLRKEWDVQLR--FIGSLQSNKVSEIVSLFDVIETVSREK----TASLLSLEMI 114
A +K L D++LR F+G LQSNK +V I +V R + A ++ E
Sbjct: 70 ASEKAASL---SDLRLRWHFVGQLQSNKAKSVVRYAHAIHSVDRPQLAAALAKSIAAEQE 126
Query: 115 KQSRF-LPVYIQVNTGYEI--QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171
+ R L +IQV+ + + G + L + G+M + P +P
Sbjct: 127 RTGRAPLECFIQVSLDEDAGSHRGGASRLEVAPLADQLAGSPGLVLAGVMAVAPLGSDPD 186
Query: 172 PHFYLLSEIA----RECKLTK-LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L+EI+ RE K +S GM++D E AI +GAT +RIGS I G RP
Sbjct: 187 AAFGKLAEISAQLLREHPSAKGISAGMSQDLESAIRAGATHLRIGSDILGSRPA 240
>gi|331269356|ref|YP_004395848.1| hypothetical protein CbC4_1171 [Clostridium botulinum BKT015925]
gi|329125906|gb|AEB75851.1| conserved hypothetical protein [Clostridium botulinum BKT015925]
Length = 220
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 102/215 (47%), Gaps = 14/215 (6%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
EN + K + +L+AVSK +++ C F ENK+QE +K DV
Sbjct: 5 ENVDKIKKSIPEGTTLIAVSKTRLLEELEEVYKCDIRDFGENKVQELIEKIDNFHD--DV 62
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
IG LQ+NKV IV +I ++ + + + V IQ+N G + K
Sbjct: 63 HWHLIGHLQTNKVKYIVGKVHLIHSLDNIRLLKEIEKRYSMCDKVANVLIQINIGRDPNK 122
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH----------FYLLSEIARE- 183
SG++ +D + C + + V+G+M + P GN + + LS+ E
Sbjct: 123 SGVLLEDLQDLINECEKCKYVKVKGIMTVIPK-GNQDTNREYFKEMKNIYNFLSKNKYEN 181
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +SMGMT D+++A+ G+ VRIG GIFG+R
Sbjct: 182 VNMEFISMGMTGDYKIALEEGSNMVRIGEGIFGKR 216
>gi|312278127|gb|ADQ62784.1| Predicted enzyme with a TIM-barrel fold [Streptococcus thermophilus
ND03]
Length = 227
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 112/231 (48%), Gaps = 30/231 (12%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
NK V+ Q ++ + A R + V+++AV+K V S+ + G AEN++ + K
Sbjct: 6 NKNDVY-QAVKRACEKANRSSEEVNIIAVTKYVSSEIAEELVETGIKHIAENRVDKFLDK 64
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ L+K +D+ IGSLQ KV ++++L D + K A + + + ++
Sbjct: 65 YQALKK-YDLTWHLIGSLQRRKVKDVINLVDYFHALDSVKLAEEIQK---RADHTINCFL 120
Query: 125 QVNTGYEIQKSGIMP-------NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
QVN E K G P NQ K+ +C + GLM + P N + +
Sbjct: 121 QVNVSGEESKHGFSPEELDTVLNQIKNLDKIC-------IVGLMTMAPIDANTQELDKIF 173
Query: 178 SEIA------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E ++ KL +LSMGM+RD+++AI +G+T VRIGS F E
Sbjct: 174 AETNELRQSIQDKKLKNVPCDQLSMGMSRDYDMAIQNGSTFVRIGSAFFKE 224
>gi|282879843|ref|ZP_06288570.1| pyridoxal phosphate enzyme, YggS family [Prevotella timonensis CRIS
5C-B1]
gi|281306237|gb|EFA98270.1| pyridoxal phosphate enzyme, YggS family [Prevotella timonensis CRIS
5C-B1]
Length = 222
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 16/205 (7%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V LVA+SK ++ I A +CGQ +F E++ QE +K L K D+Q FIG LQ+NKV
Sbjct: 19 VKLVAISKFHPAESIAEAYACGQRVFGESREQELSRKVEMLPK--DIQWHFIGHLQTNKV 76
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
I +IE V EK + + + R + V ++++ E K G + ++
Sbjct: 77 RLIAPYITMIEAVDSEKLLLEIEKQAARHQRVIDVLLELHIAEEATKYGFSLSDCSQWLA 136
Query: 148 --LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK---------LTKLSMGM 193
R + + GLM + + + + L S E K + S GM
Sbjct: 137 KGQWRSLEHVRICGLMMMASNVDDEAQIREEMTLASRFFDEVKSQYFADAPYFKERSWGM 196
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D+ +A+ G+T VR+GS IFGER
Sbjct: 197 SHDYRIAVECGSTMVRVGSAIFGER 221
>gi|237740280|ref|ZP_04570761.1| proline synthetase associated protein [Fusobacterium sp. 2_1_31]
gi|229422297|gb|EEO37344.1| proline synthetase associated protein [Fusobacterium sp. 2_1_31]
Length = 223
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 104/201 (51%), Gaps = 11/201 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR-KEWDVQLRFIGSLQS 84
+ V L+AV+K + I L GQ I ENK+Q K K + K D++ FIG+LQ
Sbjct: 22 EKVKLIAVTKYSTVEDIEEFLKTGQNICGENKVQVVKDKIEYFKNKNTDIKWHFIGNLQK 81
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV I+ I +V++ A ++ + + + + V +++N E K G ++ K
Sbjct: 82 NKVKYIIDDVVAIHSVNKLSLAQEINKKAEQSGKTMDVLLEINVYGEESKQGYSLDELKC 141
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR----------ECKLTKLSMGMT 194
++ + LN+ G+M + P + K + SE+ + + LT+LSMGM+
Sbjct: 142 DIMELKNLKNLNIIGVMTMAPFTDDEKILRMVFSELRKIKDELNKEYFDNNLTELSMGMS 201
Query: 195 RDFELAIASGATSVRIGSGIF 215
D+++A+ G+T +R+G+ IF
Sbjct: 202 NDYKIALQEGSTYIRVGTKIF 222
>gi|304570632|ref|YP_831069.2| hypothetical protein Arth_1575 [Arthrobacter sp. FB24]
Length = 248
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 17/234 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ +G++L +++I + A RP + L+ V+K + +R + G EN+ QE
Sbjct: 16 IDIGSRLAAVRRRITAATEAAGRPDNPPELIVVTKFHPAADVRRLAALGVTDVGENRDQE 75
Query: 61 AKKKWIPLRKEWDVQLR--FIGSLQSNKVSEIVSLFDVIETVSREK----TASLLSLEMI 114
A +K L D++LR F+G LQSNK +V I +V R + A ++ E
Sbjct: 76 ASEKAASL---SDLRLRWHFVGQLQSNKAKSVVRYAHAIHSVDRPQLAAALAKSIAAEQE 132
Query: 115 KQSRF-LPVYIQVNTGYEI--QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171
+ R L +IQV+ + + G + L + G+M + P +P
Sbjct: 133 RTGRAPLECFIQVSLDEDAGSHRGGASRLEVAPLADQLAGSPGLVLAGVMAVAPLGSDPD 192
Query: 172 PHFYLLSEIA----RECKLTK-LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L+EI+ RE K +S GM++D E AI +GAT +RIGS I G RP
Sbjct: 193 AAFGKLAEISAQLLREHPSAKGISAGMSQDLESAIRAGATHLRIGSDILGSRPA 246
>gi|296327467|ref|ZP_06870013.1| YggS family pyridoxal phosphate enzyme [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
gi|296155293|gb|EFG96064.1| YggS family pyridoxal phosphate enzyme [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
Length = 223
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 106/202 (52%), Gaps = 13/202 (6%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD--VQLRFIGSLQ 83
+ V LVAV+K + I L Q I ENK+Q K K I KE + ++ FIG+LQ
Sbjct: 22 EKVKLVAVTKYSSVEDIEKFLETRQNICGENKVQVIKDK-IEYFKEKNKKIKWHFIGNLQ 80
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NKV I+ D+I +V++ A ++ + + S+ + V +++N E K G ++ K
Sbjct: 81 KNKVKYIIDDVDLIHSVNKLSLAQEINKKAEQSSKIMDVLLEINVYGEESKQGYSLDELK 140
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR----------ECKLTKLSMGM 193
+I + LN+ G+M + P + K + SE+ + LT+LSMGM
Sbjct: 141 CDIIELQNLKNLNIIGVMTMAPFTDDEKILRMVFSELRKIKDELNKEYFNNNLTELSMGM 200
Query: 194 TRDFELAIASGATSVRIGSGIF 215
+ D+++A+ G+T +R+G+ IF
Sbjct: 201 SNDYKIALQEGSTFIRVGTKIF 222
>gi|2308994|dbj|BAA21689.1| hypothetical protein similar to YPI1 or YPT5 [Corynebacterium
glutamicum]
Length = 221
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81
RP+ SV L+ V+K + I++ G EN+ QEA+ K + L D+ IG
Sbjct: 13 NRPEGSVRLLPVTKFHPVEDIKILQELGVTAVGENREQEARAKALELP---DMDFHMIGQ 69
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLL----SLEMIKQSRF---LPVYIQVNTGYEIQK 134
+QS K + I + +V EK A L +L + + R LP +IQ++ + +
Sbjct: 70 IQSKKANSIARWSAAVHSVDSEKIAEALGRGVALALERGDRTSDELPCFIQLSLDGDPSR 129
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY----LLSEIARECKLT-KL 189
G +Q L EGLMC+PP +P+ F +LS + + +
Sbjct: 130 GGTPLSQVTQLADCISDTTHLRFEGLMCVPPLGWDPEKAFSQARDVLSGLEEHFDRSLEF 189
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERP 219
S GM+ D AI G+T VR+G+ I G RP
Sbjct: 190 SAGMSGDLVAAIKHGSTIVRVGTEILGNRP 219
>gi|289435372|ref|YP_003465244.1| hypothetical protein lse_2011 [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171616|emb|CBH28162.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 229
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 112/228 (49%), Gaps = 15/228 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ L+ ++IE + + R K V+LVAV+K +D+ ++ G F EN+
Sbjct: 1 MTKQANLEKVTKQIELACTESNRDKTDVTLVAVTKTIDATEMTELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L + D+ +IGSLQ+ KV +++ D + ++ R ASL + ++ +
Sbjct: 61 FLEKTTQLANKDDICWHYIGSLQTRKVKDVLPKIDYLHSLDR---ASLAKEIEKRATKLV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-KPH--FYLL 177
++QVN E K G + F+ KY + + GLM + P + + H F+ L
Sbjct: 118 KCFLQVNISGEETKHGFSKEEALSFLQEADFKY-IEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ +E T+LSMGMT DF +AI GAT +R+G + +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDFGIAITEGATFIRVGRALVSD 224
>gi|323345163|ref|ZP_08085387.1| cell division protein YlmE [Prevotella oralis ATCC 33269]
gi|323094433|gb|EFZ37010.1| cell division protein YlmE [Prevotella oralis ATCC 33269]
Length = 224
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 103/214 (48%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+LA P + V LVAVSK + I A + GQ +F E+ QE KK L K D++ F
Sbjct: 12 VLAGLP-EGVRLVAVSKFHPDEYIEAAYAEGQRVFGESHEQELSKKAATLPK--DIEWHF 68
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NKV IV +I+ V K + + + R + V ++++ E K G
Sbjct: 69 IGHLQTNKVKHIVPYISMIDAVDSLKLLREIDKQAARCGRVIRVMLELHIAEEETKYGFS 128
Query: 139 PNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEIARECK-------- 185
D + R+ + + + GLM + + + F +++ RE K
Sbjct: 129 RQDCLDMLAGGAWRELHNVQICGLMMMASNVDDEAQIAKEFDEAADLFREVKQRFFADDD 188
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ S GM+ D+ +A+ G+T VR+G+GIFG R
Sbjct: 189 AFCERSWGMSHDYRIAVKHGSTMVRVGTGIFGPR 222
>gi|239826536|ref|YP_002949160.1| alanine racemase domain protein [Geobacillus sp. WCH70]
gi|239806829|gb|ACS23894.1| alanine racemase domain protein [Geobacillus sp. WCH70]
Length = 226
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 106/233 (45%), Gaps = 28/233 (12%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + ++ IE + R + +VAV+K V K+ R AL G EN+
Sbjct: 2 MTVRDNLAIIRENIEAACQRVGRNPADIRIVAVTKYVSVKRAREALEAGITDLGENRDDG 61
Query: 61 AKKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
KK+ L E W FIG+LQS KV I+ D I ++ R A + K+
Sbjct: 62 LLKKYEALGAEPTW----HFIGTLQSRKVKNIIDKVDYIHSLDRMSLAKEIEKRATKR-- 115
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+ ++QVN E K G+ + F+ + + V GLM + P + +L
Sbjct: 116 -VKCFVQVNVSGEATKHGLAKEEVIPFIQQLQDFSHIEVIGLMTMAPYTDDES----ILR 170
Query: 179 EIARECKL---------------TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
R+ KL T+LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 171 TCFRQLKLLQENVQALHIPNAPCTELSMGMSNDYVIAIEEGATFIRLGTSLVG 223
>gi|239636335|ref|ZP_04677337.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus warneri
L37603]
gi|239597690|gb|EEQ80185.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus warneri
L37603]
Length = 223
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 105/217 (48%), Gaps = 20/217 (9%)
Query: 16 NSAILAKRPKDSVS----LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
NS I R K ++S ++AV+K V ++ + A G F EN+L+ K+K L K
Sbjct: 12 NSEINEHREKSNISTQPNVIAVTKYVTIERAKEAYQAGIRHFGENRLEGFKEKKEALPK- 70
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
D L FIGSLQS KV ++++ D + R A ++ + + ++QVN E
Sbjct: 71 -DAVLHFIGSLQSRKVKDVINDVDYFHALDRMSLAKEINK---RAEHTISCFLQVNVSGE 126
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLSEIARECK--- 185
K GI ++ F+ +Q + + GLM + P G + F L E K
Sbjct: 127 SSKHGISLDEVNAFIDEIKQFENIKIVGLMTMAPYTDDEGYIQSLFRKLRTKRDEIKQLN 186
Query: 186 -----LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+LSMGM+ D+ +AI GAT VRIG+ + GE
Sbjct: 187 LEYAPCEELSMGMSNDYPIAIEEGATFVRIGTKLVGE 223
>gi|229816835|ref|ZP_04447117.1| hypothetical protein BIFANG_02083 [Bifidobacterium angulatum DSM
20098]
gi|229785851|gb|EEP21965.1| hypothetical protein BIFANG_02083 [Bifidobacterium angulatum DSM
20098]
Length = 286
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 102/241 (42%), Gaps = 43/241 (17%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK---WIPLRKEWDVQL- 76
A R + SV L+A +K D +I A+ G + EN+ QE + K + L E L
Sbjct: 43 AGRKEGSVRLLAATKTRDVGEIMAAIDAGIRMIGENRPQEVQVKAPGLLRLAAERGFALG 102
Query: 77 ---------------------------RFIGSLQSNKVSEIVSLFDVIETVSREKTASLL 109
IG LQSNK+ +I+ D IE+V + A +
Sbjct: 103 VGGDATADASNAAASNTAAATNGMIPFHLIGQLQSNKIGKILPFVDTIESVDSIELAEKI 162
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
+ + + + V ++VN E KSG + D L ++GLM I + +
Sbjct: 163 ARRAVMRGITVGVLLEVNESGEASKSGCPASHAIDLAQRIGNMGGLQLQGLMTIGAHVSD 222
Query: 170 PK------PHF------YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
H L S T+LSMGMT D ELAIA GAT VR+G+GIFGE
Sbjct: 223 ETTIRAGFAHLRKTRDQILASGAPGTEHCTELSMGMTGDMELAIAEGATIVRVGTGIFGE 282
Query: 218 R 218
R
Sbjct: 283 R 283
>gi|315186193|gb|EFU19955.1| alanine racemase domain protein [Spirochaeta thermophila DSM 6578]
Length = 230
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 107/223 (47%), Gaps = 23/223 (10%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA--KKKWIPLR 69
++ + A R + V ++AV+K+ + I A G +F EN+LQEA K++ P
Sbjct: 13 DEVRERCVKAGRRPEEVRVMAVTKLHGPEAIADAYRAGIRLFGENRLQEAASKREAFP-- 70
Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
D +L IG LQ NK + V LF I +V R L + LPV ++VN
Sbjct: 71 --PDAELHLIGHLQRNKARKAVELFSCIHSVDRIPLIEALEKAWGDREGRLPVLVEVNLS 128
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQ----LNVEGLMCIPPAMGNPK---PHFYLLSEIAR 182
E K G +T++ V ++ L V G M + P + + F L E+A
Sbjct: 129 GEETKYGF---RTEEEVAQALERLAASPALEVRGFMTMAPYTDDERVIRAVFGGLRELAS 185
Query: 183 ECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L +LSMGM+ D+ +AI G+T +R+G+ +FGER
Sbjct: 186 RMQKAFPSLPLAELSMGMSNDYPIAIEEGSTILRLGTVLFGER 228
>gi|312864654|ref|ZP_07724885.1| pyridoxal phosphate enzyme, YggS family [Streptococcus downei
F0415]
gi|311099781|gb|EFQ57994.1| pyridoxal phosphate enzyme, YggS family [Streptococcus downei
F0415]
Length = 225
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 24/228 (10%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
NK V++Q + +A A R +S+VAV+K VDS + G EN++ + K
Sbjct: 7 NKDFVYEQ-VAQAASQAGRQVSDISIVAVTKYVDSHIAEQLVDLGVKHIGENRVDKFLDK 65
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ L+ + DV IGSLQ KV +I++ D + K A+ + + + ++
Sbjct: 66 YQALKGK-DVTWHLIGSLQRRKVKDIINYVDYFHALDSVKLAAEIQK---RADHTIKCFL 121
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVN E K G P Q + + +L + GLM + P + + L EI R+
Sbjct: 122 QVNVSGEESKHGFAPEQVNEALEELASFDKLEIVGLMTMAPIDADEQE----LDEIFRQT 177
Query: 185 K---------------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
LSMGM+RDF +AI++G+T VRIG+ F E
Sbjct: 178 NALRQELKERKIKNMPFDDLSMGMSRDFPIAISNGSTFVRIGTSFFKE 225
>gi|304440207|ref|ZP_07400097.1| YggS family pyridoxal phosphate enzyme [Peptoniphilus duerdenii
ATCC BAA-1640]
gi|304371256|gb|EFM24872.1| YggS family pyridoxal phosphate enzyme [Peptoniphilus duerdenii
ATCC BAA-1640]
Length = 228
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 96/205 (46%), Gaps = 13/205 (6%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ V L+AV+K I+ A+ G ENK+QE K+ L DV IG+LQSN
Sbjct: 25 EKVELIAVTKTHGIDIIKEAIELGVTDIGENKVQEFTTKYEKLGN--DVNFHMIGTLQSN 82
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV I +I ++ R A + + + + +QVN E K G+ ++T+ F
Sbjct: 83 KVKYIYDKAKLIHSLDRMSLAKEIERKAQASNIIVNCLVQVNISNEESKGGVSFSETEKF 142
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKP------HFYLLSEIAR-----ECKLTKLSMGMT 194
+ L + GLM I + Y L E + E ++ LSMGM+
Sbjct: 143 IESLLDFKNLKIVGLMGIAKNTDDLSEIRDSFRRLYNLKEKIKKQNIEELEMKYLSMGMS 202
Query: 195 RDFELAIASGATSVRIGSGIFGERP 219
DFE+AI G+ VRIGS IFG+R
Sbjct: 203 SDFEMAIEEGSNMVRIGSSIFGKRD 227
>gi|220906661|ref|YP_002481972.1| alanine racemase domain-containing protein [Cyanothece sp. PCC
7425]
gi|219863272|gb|ACL43611.1| alanine racemase domain protein [Cyanothece sp. PCC 7425]
Length = 228
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 99/210 (47%), Gaps = 20/210 (9%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
DSV L+AVSK V IR A + G F EN++QEA K L+ D+ IG LQSN
Sbjct: 21 DSVRLIAVSKGVSGDAIRQAYAAGVRDFGENRVQEAIAKQDELQDLNDIHWHLIGHLQSN 80
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP-VYIQVNTGYEIQKSGIMP-NQTK 143
K + FD I +V K A L + Q P V +QV + K G P + +
Sbjct: 81 KARIALQHFDWIHSVDSLKLAQ--HLNHLSQDLSPPQVLLQVKLRNDPNKYGWNPVDLLQ 138
Query: 144 DFVILCRQKYQLNVEGLMCIPP----------AMGNPKPHFYLLSEIARECK-----LTK 188
D L Q L V GLM I P G + + RE + +T+
Sbjct: 139 DLPQLA-QCSHLQVAGLMVILPLGLSETERLSTFGQARQLQLQIQAQMREQQWQNMPMTE 197
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D+ A+ +G+T VR+G +FGER
Sbjct: 198 LSMGMSDDYLQAVKAGSTMVRLGRILFGER 227
>gi|6723446|emb|CAB66326.1| putative YPT5 protein [Corynebacterium glutamicum]
Length = 221
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81
RP+ SV L+ V+K + I++ G EN+ QEA+ K + L D+ IG
Sbjct: 13 NRPEGSVRLLPVTKFHPVEDIKILQELGVTAVGENREQEARAKALELP---DMDFHMIGQ 69
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLL----SLEMIKQSRF---LPVYIQVNTGYEIQK 134
+QS K + I + +V EK A L +L + + R LP +IQ++ + +
Sbjct: 70 IQSKKANSIARWAAAVHSVDSEKIAEALGRGVALALERGDRTGDELPCFIQLSLDGDPSR 129
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY----LLSEIARECKLT-KL 189
G +Q L EGLMC+PP +P+ F +LS + + +
Sbjct: 130 GGTPLSQVTQLADCISDTTHLRFEGLMCVPPLGWDPEKAFSQARDVLSGLEEHFDRSLEF 189
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERP 219
S GM+ D AI G+T VR+G+ I G RP
Sbjct: 190 SAGMSGDLIAAIKHGSTIVRVGTEILGNRP 219
>gi|312378867|gb|EFR25319.1| hypothetical protein AND_09463 [Anopheles darlingi]
Length = 255
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 114/235 (48%), Gaps = 29/235 (12%)
Query: 12 QKIENSAILAKRPKDSVS---LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP- 67
QKI+ AK P + LVAVSK + I A S GQ F EN +QE +K
Sbjct: 15 QKID-QVYAAKSPTSNAPKPLLVAVSKTKPIELILDAYSVGQRHFGENYVQELVEKANDE 73
Query: 68 --LRKEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLS-------LEMIKQ 116
L + D++ FIG LQSNK+++I++L +I+TV K A L+ E +
Sbjct: 74 RILEQCKDIRWHFIGHLQSNKINKILNLPNLHMIQTVHSTKLAEGLNKAWEKLKTEHPET 133
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCI----PPAMGNPK 171
L V +Q+NT E +K+G+ P + + + Q L+ +G+M I P
Sbjct: 134 QAKLNVLVQINTSGEDEKNGVQPGDAVELYRYVLEQCPNLSCDGVMTIGRFGHDYSTGPN 193
Query: 172 PHFYLLSE--------IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P F L + R+ ++SMGM+ DF AI G+T VR+GS IFG R
Sbjct: 194 PDFGTLMKCHEQICCTFERDPAEVQVSMGMSDDFVQAIEEGSTIVRVGSSIFGAR 248
>gi|242794148|ref|XP_002482313.1| alanine racemase family protein, putative [Talaromyces stipitatus
ATCC 10500]
gi|218718901|gb|EED18321.1| alanine racemase family protein, putative [Talaromyces stipitatus
ATCC 10500]
Length = 340
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 114/258 (44%), Gaps = 66/258 (25%)
Query: 22 KRPKDS-VSLVAVSKMVDSKKIRVALSCG-------------------QVIFAENKLQE- 60
RP D V LVAVSK+ + I S Q+ F EN QE
Sbjct: 82 HRPADKPVRLVAVSKLKPASDILALYSPSSFPSDETPTATTTTPSATQQLHFGENYFQEL 141
Query: 61 -AKKKWIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLL------- 109
K + +P W FIG LQSNK + + V +E+V EK A LL
Sbjct: 142 LEKSRILPRGIRW----HFIGGLQSNKCTSLARDVRGLWAVESVDTEKKAKLLDKGWGER 197
Query: 110 ---SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ----LNVEGLMC 162
SL +Q + L V++QVNT E KSG+ P T LCR L ++GLM
Sbjct: 198 DFTSLSTEEQQQKLRVFVQVNTSGEENKSGVEPALTP---ALCRYIRDNCPGLKLQGLMT 254
Query: 163 IPPAMGNPKP--------HFYLLSE----IARECKLTK-------LSMGMTRDFELAIAS 203
I A+ K F L E + RE LT+ LSMGM+ DFE AIA
Sbjct: 255 IG-AIARSKETTADKENEDFVTLIETREVVVRELGLTEQEADDFELSMGMSSDFEGAIAL 313
Query: 204 GATSVRIGSGIFGERPCQ 221
G+ VR+G+ IFGERP +
Sbjct: 314 GSDQVRVGTTIFGERPVK 331
>gi|184153776|ref|YP_001842117.1| hypothetical protein LAR_1121 [Lactobacillus reuteri JCM 1112]
gi|183225120|dbj|BAG25637.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
Length = 160
Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 78/154 (50%), Gaps = 14/154 (9%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
IG LQ NKV I +I++V K + + E K R +P+ I+VN G E K G+
Sbjct: 1 MIGHLQRNKVKYIADYVTMIQSVDSLKLMNTIEKEGRKHDRIIPILIEVNVGEEESKFGV 60
Query: 138 MPNQTKDFVILCRQKYQL---NVEGLMCIPPAMGNP---KPHFYLLSEIARE-------C 184
P +D + L QL + GLM P +P +P F L E+ E
Sbjct: 61 KPT-LQDCMELAEASLQLPHVKLRGLMTSAPYYDDPEKTRPIFRRLRELRDEMNNQNDQL 119
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
KL LSMGMT D+E+A+ G+T VR+G+ IFG R
Sbjct: 120 KLDVLSMGMTHDYEIAVEEGSTCVRVGTAIFGPR 153
>gi|289551029|ref|YP_003471933.1| hypothetical protein SLGD_01715 [Staphylococcus lugdunensis
HKU09-01]
gi|289180561|gb|ADC87806.1| protein of unknown function [Staphylococcus lugdunensis HKU09-01]
Length = 222
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 115/235 (48%), Gaps = 31/235 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDS-VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M + + L +Q+IE+ K DS ++++AV+K V ++ + A G F EN+L+
Sbjct: 1 MDVKSNLAHIQQEIESHK--KKSTIDSHINVIAVTKYVTIERAKEAYDAGLRHFGENRLE 58
Query: 60 E--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
KK +P D + FIGSLQS KV ++++ D + R A ++ + +
Sbjct: 59 GFLEKKAALP----EDAVMHFIGSLQSRKVKDVINEVDYFHALDRMSLAKEINK---RAN 111
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
+ ++QVN E K GI N+ F+ + + + GLM + P + + +
Sbjct: 112 HTISCFLQVNVSGEASKHGIHLNEVDKFIDDIKAYENIKIVGLMTMAPFTDDTQ----YI 167
Query: 178 SEIARECKL---------------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E+ ++ +L T+LSMGM+ D+ +A+ GAT +RIG+ + GE
Sbjct: 168 QELFKKLRLKRDDIQQRQLTYAPCTELSMGMSNDYPVAVEEGATYIRIGTKLVGE 222
>gi|33865194|ref|NP_896753.1| hypothetical protein SYNW0660 [Synechococcus sp. WH 8102]
gi|33638878|emb|CAE07175.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 220
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 7/207 (3%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL 76
+A+ A P + L+AVSK + IR GQ F E++LQEA K L + +Q
Sbjct: 10 TALQAALPA-TAQLLAVSKGHPAAVIRELAGSGQRAFGESRLQEALPKQEQL-ADLALQW 67
Query: 77 RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG 136
FIG LQSNKV +V F VI +V A +S ++ ++ V +QV + K G
Sbjct: 68 HFIGRLQSNKVRSVVRAFPVIHSVDSLPLAQRVSRIAGEEEQWPEVLLQVKLRPDTNKGG 127
Query: 137 IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG----NPKPHFYLLSEIARECKLTKLSMG 192
+ ++ + V GLM + P MG + + F E+A + +L + SMG
Sbjct: 128 FLRDELLSAWTELAALPSMTVIGLMTMAP-MGCDADDRRALFQECRELADQLELRECSMG 186
Query: 193 MTRDFELAIASGATSVRIGSGIFGERP 219
M+ D++ A A+G+T +R+GS +FG RP
Sbjct: 187 MSGDWQDAAAAGSTWLRLGSVLFGPRP 213
>gi|313837213|gb|EFS74927.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL037PA2]
gi|314927769|gb|EFS91600.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL044PA1]
gi|314971984|gb|EFT16082.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL037PA3]
Length = 198
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 25/196 (12%)
Query: 45 ALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLRFIGSLQSNKVSEIVSLFDVIET 99
A G +F ENK+Q+A K + EW + IG LQ+NK + +
Sbjct: 5 AYQAGYRLFGENKVQDALAKSELMDADHPGLEWAI----IGGLQTNKAKYVARFAAEFQA 60
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ K A L + ++ L V +QVN+ E QKSGI P++ +F L+V G
Sbjct: 61 LDSLKVAHELDKRLQQEGHQLRVLVQVNSSAEPQKSGIAPDEAVEFARELAAFDSLDVRG 120
Query: 160 LMCIPPAMGNPKPH-----FYLLS--------EIARECKLTKLSMGMTRDFELAIASGAT 206
LM + A+ +P F L++ E ++LSMGM+ D E+AIA G+T
Sbjct: 121 LMTV--ALNSPDQQAVADCFDLVAATQEKLRQEAGDISSWSELSMGMSGDLEIAIAHGST 178
Query: 207 SVRIGSGIFGER-PCQ 221
VRIG+ IFG R P Q
Sbjct: 179 QVRIGTDIFGARDPAQ 194
>gi|295662246|ref|XP_002791677.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
gi|226279803|gb|EEH35369.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
Length = 303
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 113/244 (46%), Gaps = 53/244 (21%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCG-QVIFAENKLQE--AKKKWIPLRKEWDVQLRF 78
+RP V LVAVSK+ + I++ + ++ F EN LQE K K +P W F
Sbjct: 59 QRP---VRLVAVSKLKPASDIQILHNHDPRLHFGENYLQELLEKSKVLPCGIRW----HF 111
Query: 79 IGSLQSNK---VSEIVSLFDVIETVSREKTASLLSL-----------------EMIKQSR 118
IG LQSNK ++ V +E+V EK ASLL + I
Sbjct: 112 IGGLQSNKCVTLARDVRGLWAVESVDTEKKASLLDRGWGERDVDVNEEGGKKGQSINAGD 171
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCI-------PPAMGNP 170
L V++QVNT E KSG+ P + R+K +L ++GLM I + N
Sbjct: 172 RLRVFVQVNTSGEESKSGVKPAEAVSLCRFIREKCPRLKLQGLMTIGAIARSKATTVENE 231
Query: 171 KPHFYLLSE----IARECKL-----------TKLSMGMTRDFELAIASGATSVRIGSGIF 215
F L E + +E +L +LSMGM+ DFE AIA G+ VRIGS IF
Sbjct: 232 NEDFVCLRETRDMVEKELELVADEGEGGAEGLELSMGMSEDFEGAIAMGSNQVRIGSTIF 291
Query: 216 GERP 219
G RP
Sbjct: 292 GARP 295
>gi|306836482|ref|ZP_07469455.1| YggS family pyridoxal phosphate enzyme [Corynebacterium accolens
ATCC 49726]
gi|304567645|gb|EFM43237.1| YggS family pyridoxal phosphate enzyme [Corynebacterium accolens
ATCC 49726]
Length = 232
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 110/233 (47%), Gaps = 24/233 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L K+ I SAI A+ + S L+ V+K ++ I + G AEN+ QEA+
Sbjct: 8 LADNLAATKEHI--SAIAAEHDRPSPQLLVVTKFHPAEDIALLAELGVEDVAENREQEAR 65
Query: 63 KKWIPLRKEWDVQLRF--IGSLQSNKVSEIVSLFDVIETVSREKTASLL------SLEMI 114
K L QLRF IG +Q+ K + + + +V K A+ L + E
Sbjct: 66 AKAQKLD-----QLRFHMIGQIQTKKANHVARWAASVHSVDSVKLANALDRGVSLAKERG 120
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
++ LP++IQV+ + + G++ + + + L GLM +PP + + F
Sbjct: 121 QRESNLPIFIQVSADGDTSRGGVVREELDEVIEAVEAAEHLEFAGLMVVPPLDADAQEVF 180
Query: 175 YL-------LSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LSE R + KLS GM+ D + AIA+G VR+G+ I G+RP
Sbjct: 181 STVRADVVRLSE--RLGRQLKLSAGMSADMDAAIAAGTDIVRVGTSIMGKRPV 231
>gi|296129029|ref|YP_003636279.1| alanine racemase domain protein [Cellulomonas flavigena DSM 20109]
gi|296020844|gb|ADG74080.1| alanine racemase domain protein [Cellulomonas flavigena DSM 20109]
Length = 255
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 105/239 (43%), Gaps = 24/239 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL-----------SCGQV 51
+ +L ++++ + A R D V ++ SK +D +R AL + V
Sbjct: 13 VARRLAQVQERVAAACAAAARRPDEVRVLLASKTMDVATVRAALLADTAARTAGATHAPV 72
Query: 52 IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
+ EN++QE K P + + IG LQSNKV+ + +E+V+ + A LS
Sbjct: 73 LLGENRVQELVTK-APALADLEPTWHVIGPLQSNKVNAALRWAAAVESVADDALARRLSG 131
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP- 170
+ + L V++Q N E K G+ P+ D + L + GLM + +
Sbjct: 132 RAQGREQPLDVWVQANVSGEPTKHGVAPDAAADLAVRVAALPGLRLAGLMTVGARSDDER 191
Query: 171 --KPHFYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ F L + E LSMGM+ D E A+A GAT VRIG+ +FG R
Sbjct: 192 VVRAGFARLRAVRDEVVASGEPGTEHAHGLSMGMSGDLEAAVAEGATVVRIGTAVFGLR 250
>gi|308173500|ref|YP_003920205.1| hypothetical protein BAMF_1609 [Bacillus amyloliquefaciens DSM 7]
gi|307606364|emb|CBI42735.1| conserved hypothetical protein [Bacillus amyloliquefaciens DSM 7]
gi|328553569|gb|AEB24061.1| hypothetical protein BAMTA208_09470 [Bacillus amyloliquefaciens
TA208]
gi|328911639|gb|AEB63235.1| hypothetical protein LL3_01695 [Bacillus amyloliquefaciens LL3]
Length = 230
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 113/232 (48%), Gaps = 26/232 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++L+ ++I + + R + V+++AV+K V +++ + A+ G EN+ E
Sbjct: 1 MRVADQLRHINERINEACNRSGRSPEDVTVIAVTKYVSAERAQEAVDAGITSLGENRDTE 60
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS- 117
K+ I EW FIGSLQ+ KV +V I ++ R L+ E+ K++
Sbjct: 61 LIRKQDVIKGSPEW----HFIGSLQTRKVKAVVDRVSYIHSLDRLS----LAKEIEKRAP 112
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP------- 170
+ ++QVNT E K G+ + F+ ++VEGLM + P +
Sbjct: 113 HAVRCFVQVNTSREPSKHGLKTEEVIPFIRELSDFRNISVEGLMTMAPLTDDTETIRACF 172
Query: 171 ------KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ L++ C+ +LSMGM+ D+E+A+ GAT +RIGS + G
Sbjct: 173 RQLRDLRDQVQQLNQTNAPCR--ELSMGMSNDYEIAVEEGATFIRIGSSLVG 222
>gi|299069052|emb|CBJ40303.1| Putative predicted enzyme with a tim-barrel fold protein (fragment)
[Ralstonia solanacearum CMR15]
Length = 129
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + + ++ I+++AI + R D+V+LVA SK V+S +I+ A+ G +F EN++QEA
Sbjct: 4 TLEDNIGRIRKAIQHAAIDSGRRADAVTLVAASKTVESHRIQQAIDLGLTVFGENRVQEA 63
Query: 62 KKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK 104
KW LR + ++L IG LQSNKV + V LFDVIE+V R +
Sbjct: 64 VSKWPELRSRNPGIELHLIGPLQSNKVRQAVGLFDVIESVDRSR 107
>gi|172040880|ref|YP_001800594.1| hypothetical protein cur_1200 [Corynebacterium urealyticum DSM
7109]
gi|171852184|emb|CAQ05160.1| conserved hypothetical protein [Corynebacterium urealyticum DSM
7109]
Length = 236
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 102/230 (44%), Gaps = 21/230 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ +Q+I + L+ ++K + I + + G EN+ QEAK
Sbjct: 17 LAENLRAVRQRIAVAG--------GADLLPITKFHPVEDIELLRAGGIHAVGENREQEAK 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK------TASLLSLEMIKQ 116
+K L V++ +G +Q+NK + + + T E+ + L+LE +
Sbjct: 69 RKATEL--AGSVEIHMVGQIQTNKANSVARWAAAVHTADSERLITALERGAGLALERGDR 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY- 175
+ LPV +Q + + Q+ G +Q L L + GLM +PP +P F
Sbjct: 127 AEKLPVLVQFSADGDPQRGGAPEDQIDQLADLVAGSEHLELRGLMTVPPLGSDPAEVFAR 186
Query: 176 ---LLSEIA-RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
LL I+ R S GM+ D E+AI G+T VR+G+ I G RP +
Sbjct: 187 GRTLLDGISDRVLGAPVYSAGMSHDLEIAIGEGSTLVRVGTDIMGSRPVR 236
>gi|302790652|ref|XP_002977093.1| hypothetical protein SELMODRAFT_106172 [Selaginella moellendorffii]
gi|300155069|gb|EFJ21702.1| hypothetical protein SELMODRAFT_106172 [Selaginella moellendorffii]
Length = 244
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 108/227 (47%), Gaps = 18/227 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ +++ +A + R V++VAVSK IR G F EN +QE K
Sbjct: 15 LRSVYERVRVAAERSGRSASQVNVVAVSKTKPVSLIREVYDAGHRHFGENYVQEFIDKAP 74
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVS----LFDVIETVSREKTASLLSLEM-IKQSRFLP 121
L D++ FIG LQSNK +V+ L+ ++E + K ASLL + + Q L
Sbjct: 75 QLPS--DIRWHFIGHLQSNKAKSLVANVPQLY-MVEGIDNFKVASLLDRAVSLLQRNPLK 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +QVNT E KSG+ P+ + + L GLM I P +
Sbjct: 132 VLVQVNTSGEESKSGVEPSACVELAKQIKADCPNLEFSGLMTIGMQDYTSTPENFKALVN 191
Query: 181 ARE--CKL-------TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
RE CK +LSMGM+ DFE AI G+T+VRIGS IFG R
Sbjct: 192 CREDVCKALEIPQSSCELSMGMSGDFEQAIEMGSTNVRIGSTIFGAR 238
>gi|156405523|ref|XP_001640781.1| predicted protein [Nematostella vectensis]
gi|156227917|gb|EDO48718.1| predicted protein [Nematostella vectensis]
Length = 297
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 117/243 (48%), Gaps = 30/243 (12%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
++G L+ QKI + + KRP++ LVAVSK + I A + GQ F EN
Sbjct: 5 NIGLALKTVLQKI--NEVAEKRPENLQKLVPRLVAVSKTKPIECIIEAYNNGQRHFGENY 62
Query: 58 LQE--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLL--SL 111
+QE K LR ++ FIG LQ NK + +V + ++ +ETV EK A+ L S
Sbjct: 63 VQELVGKSNDPRLRNLVGLRWHFIGHLQRNKCNNLVGVPNLYMVETVDSEKLAATLNNSW 122
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMP---NQTKDFVILCRQKYQLNVEGLMCIPP--- 165
L V ++VNT E K G +P Q +FV + L + GLM I
Sbjct: 123 GKFPNREPLKVMVEVNTSEEKSKKGCLPAEATQLTEFVF--NECPHLRLSGLMTIGQYNY 180
Query: 166 --AMGNPKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIF 215
P P F L EI + L +LSMGM+ D+E AI G+T+VR+GS IF
Sbjct: 181 DWEKHGPNPDFLRLIRCREEICGKLNLPLERFELSMGMSSDYEKAITMGSTNVRVGSTIF 240
Query: 216 GER 218
G R
Sbjct: 241 GVR 243
>gi|29832668|ref|NP_827302.1| hypothetical protein SAV_6126 [Streptomyces avermitilis MA-4680]
gi|29609788|dbj|BAC73837.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 239
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 115/235 (48%), Gaps = 24/235 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I + A R ++ V+L+ V+K + +R+ G AENK Q+A
Sbjct: 8 LAANLAKVEDRIAAACAAAGRGREEVTLIVVTKTYPAIDVRILSELGVRDVAENKDQDAA 67
Query: 63 KKW-----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K +PL+ W F+G LQ+NKV +V DV+++V R K + LS E ++
Sbjct: 68 PKAAECSDLPLK--W----HFVGQLQTNKVRSVVGYADVVQSVDRPKLVTALSKEAVRAG 121
Query: 118 RFLPVYIQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---- 169
R + IQV + ++ G+ P ++ L + L ++GLM + P G
Sbjct: 122 REVGCLIQVALDAQEYGRGERGGVGPGGLEELGDLVAEAPGLRLDGLMTVAPLTGEYAGR 181
Query: 170 PKPHFYLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ F L +++ + + +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 182 QRAAFDRLMDLSTDLRRAHPAANMVSAGMSADLEEAVAAGATHVRVGTAVLGVRP 236
>gi|156836871|ref|XP_001642476.1| hypothetical protein Kpol_264p4 [Vanderwaltozyma polyspora DSM
70294]
gi|156113010|gb|EDO14618.1| hypothetical protein Kpol_264p4 [Vanderwaltozyma polyspora DSM
70294]
Length = 270
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 107/217 (49%), Gaps = 22/217 (10%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
KD V L+AVSK+ + +++ G F EN +QE +K I L K D+ FIG LQS
Sbjct: 55 KDQVMLLAVSKLKPASDVQLLYDHGIRHFGENYVQELIEKSIALPK--DINWHFIGGLQS 112
Query: 85 NKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRFLP---VYIQVNTGYEIQKSGIMP 139
NK ++ + ++ +ETV K A+ L+ K + P +IQ+NT E QKSG+
Sbjct: 113 NKCKDLAKIPNLYAVETVDSLKKANKLNEARSKYNPDSPPINCFIQINTSNEEQKSGLSD 172
Query: 140 NQTKDFVILCRQKYQ---LNVEGLMCIPP--AMGNPKPHFYLL---------SEIARECK 185
+I +N+ GLM I N P + L S+I +
Sbjct: 173 ESEIFEIIEFFFNSNTKNINLIGLMTIGSWETSHNNDPDYINLDFENLVNWKSKIDSKYN 232
Query: 186 LT-KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
KLSMGM+ DF+ AI G + VR+G+ IFG RP +
Sbjct: 233 TNLKLSMGMSADFKQAIKQGTSEVRVGTDIFGVRPAK 269
>gi|325845144|ref|ZP_08168453.1| pyridoxal phosphate enzyme, YggS family [Turicibacter sp. HGF1]
gi|325488809|gb|EGC91209.1| pyridoxal phosphate enzyme, YggS family [Turicibacter sp. HGF1]
Length = 216
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 107/209 (51%), Gaps = 27/209 (12%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFI 79
+R ++ V +VA +K V+ ++++ CG I EN++ KK + L EW FI
Sbjct: 18 QRDREKVRIVAATKYVNVEQMKRLYDCGITIMGENRVDALLEKKAQLHLPIEW----HFI 73
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSL-EMIKQSRFLPV--YIQVNTGYEIQKSG 136
G+LQS KV E+++ DV+ ++ R LSL + I++ R P+ IQVN E K G
Sbjct: 74 GTLQSRKVKEVINEIDVLHSLDR------LSLAKEIEKYRDKPLKCLIQVNISGEKTKHG 127
Query: 137 IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA----------RECKL 186
+ ++ F+ ++ V GLM + P N SE+ + C+
Sbjct: 128 LAKDEVVTFIEQLNSFSKIEVIGLMTMAPNTENELTLRRCFSELKQLQLDLEKNYKSCQ- 186
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIF 215
+LSMGM+ D+ +A+ GAT VR+GS +F
Sbjct: 187 -ELSMGMSNDYLIAVEEGATYVRLGSILF 214
>gi|167381023|ref|XP_001735540.1| proline synthetase associated protein [Entamoeba dispar SAW760]
gi|165902419|gb|EDR28257.1| proline synthetase associated protein, putative [Entamoeba dispar
SAW760]
Length = 228
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 110/209 (52%), Gaps = 11/209 (5%)
Query: 20 LAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQEAKKKWIPLRKEW-DVQLR 77
L+ + + V L+AVSK + ++ + +F EN +QE +K L + +++
Sbjct: 16 LSSQREKPVCLIAVSKTKPKEAVQHLYNKYNHYVFGENYIQELHEKATELEEVCPNIEWH 75
Query: 78 FIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKS 135
FIG LQSNK+ ++S I+T+ + A L+ I ++ + V +Q+N+ E QK
Sbjct: 76 FIGRLQSNKLKLLISTPHLKCIQTIHSLEIAEKLNKACINANKVIDVMVQINSSGEEQKG 135
Query: 136 GIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKLTKL 189
G+ + + V + L+ G+M I +G+ K +F + ++A + ++
Sbjct: 136 GVSVEEALNVVKEVMKYSNLHFIGIMTIG-MVGDSKKNFTTMKQLADIICSQEHLESIEI 194
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMGM+ D+ELAI GAT VR+G+ +FG R
Sbjct: 195 SMGMSSDYELAIELGATMVRVGTALFGAR 223
>gi|331001802|ref|ZP_08325324.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412776|gb|EGG92159.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae oral taxon
107 str. F0167]
Length = 226
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 119/225 (52%), Gaps = 17/225 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKK 64
L+ + ++ N+ + R D ++L+AVSK ++ I A G F ENK+QE KK+
Sbjct: 6 LKNIRDEMNNACERSNRNLDDITLIAVSKTKPNELIMEAYESGVRDFGENKVQELLRKKE 65
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+P DV+ IG LQ+NKV +++ +I ++ + A + E K+ + +
Sbjct: 66 ELP----DDVRWHMIGHLQTNKVRQLLGNTVLIHSIDSIRLADTIDTEARKKGIHVDGLL 121
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA 181
++N E K G + + ++ + + + L+++GLM I P + N + +F L +++
Sbjct: 122 EINIAKEASKYGFIEEELEEILPIFARYKNLHIKGLMTIAPNVENSEENRKNFKKLKKLS 181
Query: 182 RE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ LSMGM+ D+ +A+ GA +R+G+GIFG+R
Sbjct: 182 VDIIDKNYDNVEVEFLSMGMSGDYIVALEEGANLLRVGTGIFGKR 226
>gi|21903490|sp|O24748|Y2153_CORGL RecName: Full=UPF0001 protein Cgl2153/cg2364
gi|21324923|dbj|BAB99546.1| Predicted enzyme with a TIM-barrel fold [Corynebacterium glutamicum
ATCC 13032]
Length = 221
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 96/210 (45%), Gaps = 15/210 (7%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81
RP+ SV L+ V+K + I++ G EN+ QEA+ K + L D+ IG
Sbjct: 13 NRPEGSVRLLPVTKFHPVEDIKILQEFGVTAVGENREQEARAKALELP---DMDFHMIGQ 69
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLL----SLEMIKQSRF---LPVYIQVNTGYEIQK 134
+QS K + I + +V EK A L +L + + R LP +IQ++ + +
Sbjct: 70 IQSKKANSIARWAAAVHSVDSEKIAEALGRGVALALDRGDRTSDELPCFIQLSLDGDPSR 129
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY----LLSEIARECKLT-KL 189
G +Q L EGLMC+PP P+ F +LS + + +
Sbjct: 130 GGTPLSQVTQLADCISDTTHLRFEGLMCVPPLGWGPEKAFSQARDVLSGLEEHFDRSLEF 189
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERP 219
S GM+ D AI G+T VR+G+ I G RP
Sbjct: 190 SAGMSGDLVAAIKHGSTIVRVGTEILGNRP 219
>gi|260592419|ref|ZP_05857877.1| pyridoxal phosphate enzyme, YggS family [Prevotella veroralis
F0319]
gi|260535655|gb|EEX18272.1| pyridoxal phosphate enzyme, YggS family [Prevotella veroralis
F0319]
Length = 223
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 100/207 (48%), Gaps = 16/207 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
D V LVA+SK + I VA GQ IF E+ QE K L + D++ FIG LQ+N
Sbjct: 17 DGVKLVAISKFHPKEYIEVAYREGQRIFGESHEQELAGKVQSLPQ--DIEWHFIGHLQTN 74
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV I S +IE V K ++ + K +R + V ++++ E K G PN ++F
Sbjct: 75 KVKYIASYISMIEAVDTVKLLKEINKQAAKYNRVINVLLELHIAEEESKYGFTPNACREF 134
Query: 146 VIL--CRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLTKL---------SM 191
+ R+ +++ GLM + + + + S + E K + S
Sbjct: 135 LKSGEWRELKNVHISGLMMMASNVEDQEQIRKEMIFASNLFDELKASYFSDDPEFKERSW 194
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D+ +A+ +T VR+G+ IFG R
Sbjct: 195 GMSHDYPIAVECHSTMVRVGTAIFGPR 221
>gi|314933364|ref|ZP_07840729.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus caprae C87]
gi|313653514|gb|EFS17271.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus caprae C87]
Length = 224
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 110/229 (48%), Gaps = 19/229 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSV-SLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS+ L+ +QKI S L K + ++AV+K V ++ + A G F EN+L+
Sbjct: 1 MSVKQNLRQIEQKI--SEHLEKSSNSAHPHVIAVTKYVTIERAKEAYEAGIRHFGENRLE 58
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K+K L D FIGSLQS KV E+++ D + R A ++ +
Sbjct: 59 GFKEKKATLPD--DAVFHFIGSLQSRKVKEVINEVDYFHALDRLSLAKEINK---RADHV 113
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ ++QVN E K GI ++ +F+ + + V GLM + P + K F
Sbjct: 114 ISCFLQVNVSGEESKHGIALDEVNEFLKELKAYENIKVIGLMTMAPLTDDSAYIKSIFND 173
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
L E + T+LSMGM+ D+++A+ GAT VRIG+ + GE
Sbjct: 174 LRHKKEEIQQFNLEHAPCTELSMGMSNDYQIAVEEGATFVRIGTKLVGE 222
>gi|223043759|ref|ZP_03613802.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus capitis
SK14]
gi|222442856|gb|EEE48958.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus capitis
SK14]
Length = 224
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 111/229 (48%), Gaps = 19/229 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSV-SLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS+ L+ +Q+I S L K + ++AV+K V ++ + A G F EN+L+
Sbjct: 1 MSVKQNLKQIEQEI--SEHLEKSSNSAHPHVIAVTKYVTIERAKEAYEAGIRHFGENRLE 58
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K+K L DV FIGSLQS KV E+++ D + R A ++ +
Sbjct: 59 GFKEKKAALPD--DVVFHFIGSLQSRKVKEVINEVDYFHALDRLSLAKEINK---RADHV 113
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ ++QVN E K GI ++ +F+ + + V GLM + P + K F
Sbjct: 114 VSCFLQVNVSGEESKHGIALDEVNEFLKELKAYENIKVIGLMTMAPLTDDSVYIKSIFND 173
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
L E + T+LSMGM+ D+++A+ GAT VRIG+ + GE
Sbjct: 174 LRHKKEEIQQFNLEHAPCTELSMGMSNDYQIAVEEGATFVRIGTKLVGE 222
>gi|229815118|ref|ZP_04445455.1| hypothetical protein COLINT_02160 [Collinsella intestinalis DSM
13280]
gi|229809348|gb|EEP45113.1| hypothetical protein COLINT_02160 [Collinsella intestinalis DSM
13280]
Length = 245
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 109/224 (48%), Gaps = 23/224 (10%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL--- 68
Q+++ S + R +D LVAVSK V ++ A+ G +F EN+ QE +K L
Sbjct: 18 QRVDASLAVGGRTRDEAELVAVSKTVGLMQVLAAIDAGYRVFGENRPQELHRKLEGLELV 77
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVI---------ETVSREKTASLLSLEMIKQSRF 119
++ V+ IG+LQ+NK++ ++ ++I E VS L + E+ R
Sbjct: 78 QETRPVRFDMIGNLQTNKINAVLGRVELIHSIGTMHLAEAVSNRALRRLDAGELAAPQR- 136
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH--FYLL 177
V I+VN E K G P++ + + + + +EGLM + P + F L
Sbjct: 137 --VLIEVNVSGEETKGGFSPDELRRSMDGLQNLCGIRIEGLMTMAPRGDKSRARECFAGL 194
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ E + L +LS GM+ D+E+A+ G+T VR+G +F
Sbjct: 195 RELRDELRVSSGLELRELSCGMSEDYEIALEEGSTIVRLGRVVF 238
>gi|194746150|ref|XP_001955547.1| GF16195 [Drosophila ananassae]
gi|190628584|gb|EDV44108.1| GF16195 [Drosophila ananassae]
Length = 249
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 110/216 (50%), Gaps = 24/216 (11%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNK 86
LVAVSK + + A GQ F EN +QE ++K + + D++ FIG +QSNK
Sbjct: 35 LVAVSKTKPADAVIEAYQAGQRDFGENYVQELEEKSRHPDIVAQCPDIRWHFIGHMQSNK 94
Query: 87 VSEIVSLFDV--IETVSREKTASLLSLEMIK----QSRFLPVYIQVNTGYEIQKSGIMPN 140
+++++++ ++ I+TV +K A+ L K + L V IQ+NT E KSGI P
Sbjct: 95 INKVLAVPNLYMIQTVDSQKLATKLDAAWSKVQPPKDEPLKVLIQINTSGEDVKSGIEPK 154
Query: 141 QTKD-FVILCRQKYQLNVEGLMCIPPAMG-----NPKPHFYLLSEIARE-CKLTKL---- 189
+ F + L + G+M I A G P P F L ++ R C+ L
Sbjct: 155 EAPALFEFIKSNLKHLKLMGIMTIG-AYGFDYSNGPNPDFVSLMQVHRSICEGNSLAPES 213
Query: 190 ---SMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
SMGM+ D++ AI G+T VR+G+ IFG R +
Sbjct: 214 VLVSMGMSNDYDRAIEMGSTVVRVGTSIFGYRAAKA 249
>gi|158255706|dbj|BAF83824.1| unnamed protein product [Homo sapiens]
Length = 275
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 122/246 (49%), Gaps = 34/246 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 11 LGVGCALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 68
Query: 57 KLQE-----AKKKWIPLRKEWDVQLRFIGSLQS---NKVSEIVSLFDVIETVSREKTASL 108
+Q + K + L E ++ FIG LQ NK+ + +LF ++ETV K A
Sbjct: 69 YVQALLEKASNPKILSLCPE--IKWHFIGHLQKQNVNKLMAVPNLF-MLETVDSVKLADK 125
Query: 109 L--SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPP 165
+ S + L V +Q+NT E K G+ P++T V K L GLM I
Sbjct: 126 VNSSWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIG- 184
Query: 166 AMGN-----PKPHFYLLSEIARE-CK-------LTKLSMGMTRDFELAIASGATSVRIGS 212
+ G+ P P F LL + E CK +LSMGM+ DF+ A+ G+T+VRIGS
Sbjct: 185 SFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGS 244
Query: 213 GIFGER 218
IFGER
Sbjct: 245 TIFGER 250
>gi|321315303|ref|YP_004207590.1| hypothetical protein BSn5_19795 [Bacillus subtilis BSn5]
gi|320021577|gb|ADV96563.1| hypothetical protein BSn5_19795 [Bacillus subtilis BSn5]
Length = 230
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ ++I + + R D V+++AV+K V ++ + A+ G EN+ E
Sbjct: 1 MRVVDNLRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAE 60
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K++ + EW FIGSLQS K +V+ I ++ R L+ E+ K++
Sbjct: 61 LLRKQELMKGNPEW----HFIGSLQSRKAKSVVNAVSYIHSLDRLS----LAKEIEKRAE 112
Query: 119 -FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
+ ++QVNT E K G+ + F+ + V GLM + P + + F
Sbjct: 113 GIVRCFVQVNTSLEPSKHGMKKEEVIPFIQELSGFEHILVAGLMTMAPLTDDQDQIRSCF 172
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L E+ + + T+LSMGM+ DFE+AI GAT +RIGS + G
Sbjct: 173 RSLRELRDQVQKLNQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVG 222
>gi|227495281|ref|ZP_03925597.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
gi|226831151|gb|EEH63534.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
Length = 276
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 89/181 (49%), Gaps = 13/181 (7%)
Query: 50 QVIFAENKLQEAKKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS 107
+ + A N++QEA+ LR IG+LQ NK++ V +FD IE+V A
Sbjct: 96 RALLAHNRVQEAQATTPILRDGPLSSFHSVLIGNLQRNKINAAVRVFDEIESVDSLALAR 155
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM 167
LS + + + LP+ +QVNT E+ KSG++P + + L V G M I
Sbjct: 156 ALS-QRLDPTEQLPIMLQVNTSRELSKSGLVPEVALETALEIADLPGLLVTGFMTIGAHT 214
Query: 168 GNPK---PHFYLLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ F L I E K LSMGM+ DFELAIA G+T +RIG+ +FG
Sbjct: 215 TDQALIGKSFANLRAIRDEAIKHPSLKKAINLSMGMSSDFELAIAEGSTRIRIGNAVFGP 274
Query: 218 R 218
R
Sbjct: 275 R 275
>gi|281355307|ref|ZP_06241801.1| alanine racemase domain protein [Victivallis vadensis ATCC BAA-548]
gi|281318187|gb|EFB02207.1| alanine racemase domain protein [Victivallis vadensis ATCC BAA-548]
Length = 226
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 100/209 (47%), Gaps = 19/209 (9%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R D V L+AVSK ++ IR G +F E++ E +K L D++ FIG L
Sbjct: 24 RSADEVRLLAVSKTFPAEMIRELYEHGVRLFGESRAPELAEKAAALPA--DIEWHFIGRL 81
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q+NKV ++V L VI +V + + + ++ R V ++ N E K+G+ +
Sbjct: 82 QANKVRKVVQLAGVIHSVDTPELLTRIDRIAGEEGRRPVVLLEANVSGEESKAGVPVGEL 141
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK-------------L 189
+ F ++ +G M + P P + ++ I KLT+ L
Sbjct: 142 EAFARQAASLPNVDFQGFMTMAPFDAEP----FRIAAIFELLKLTRDELEGKLNRQLPIL 197
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMGM+ DFE+A G+T VR+GS IFG R
Sbjct: 198 SMGMSGDFEIAARHGSTLVRVGSLIFGAR 226
>gi|85077550|ref|XP_956018.1| hypothetical protein NCU03579 [Neurospora crassa OR74A]
gi|28881125|emb|CAD70296.1| conserved hypothetical protein [Neurospora crassa]
gi|28917059|gb|EAA26782.1| hypothetical protein NCU03579 [Neurospora crassa OR74A]
Length = 262
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 124/247 (50%), Gaps = 39/247 (15%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQV---IFAENKL 58
+L ++LQ + +I A+ RP V LVAVSK+ + I QV F EN
Sbjct: 15 ALVSQLQSVQDRI--LAVAKGRP---VRLVAVSKLKPANDILALHQAPQVQHAHFGENYA 69
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNK---VSEIVSLFDV--IETVSREKTASLLSLEM 113
QE ++K L + +Q FIG LQ+ ++ I +L+ V ++T+ + +T + + E+
Sbjct: 70 QELQQKAELLPR--SIQWHFIGGLQTTHCKSLARIPNLWAVSSLDTLKKAQTLNRVRGEV 127
Query: 114 IKQSRFLP---VYIQVNTGYEIQKSGIMPNQTKDFVILCR----QKYQLNVEGLMCI--- 163
I +P V++QVNT E KSG P Q + V LC+ + LN+ GLM I
Sbjct: 128 ISSDPSIPKLNVHVQVNTSGEESKSGCSPGQ--ETVDLCKAIVTECPHLNLLGLMTIGAI 185
Query: 164 ----PPAMGNPKPHFYLLSE----IARECKLTK----LSMGMTRDFELAIASGATSVRIG 211
N F +L E + +E L K LSMGM+ DFE AIA G+ VR+G
Sbjct: 186 ARSKATTPENENEDFVVLREQRDLVEKELGLDKGSLELSMGMSEDFEGAIAMGSGEVRVG 245
Query: 212 SGIFGER 218
S IFGER
Sbjct: 246 STIFGER 252
>gi|257067989|ref|YP_003154244.1| pyridoxal phosphate enzyme, YggS family [Brachybacterium faecium
DSM 4810]
gi|256558807|gb|ACU84654.1| pyridoxal phosphate enzyme, YggS family [Brachybacterium faecium
DSM 4810]
Length = 252
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 97/217 (44%), Gaps = 21/217 (9%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSC-----GQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
R ++++ +KM +I VA+ +V EN+ QE K PL + V
Sbjct: 38 RDSREITVLLATKMRTPPEIAVAIELLRERGRRVAVGENRAQEISKHADPLLADNGVPRH 97
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
FIG LQ+NK ++V+ + I +V R+ A L V +QVNT E K G
Sbjct: 98 FIGRLQTNKARDVVAFAETIHSVDRDGIADALERRAETAGVQRDVLVQVNTSGEESKGGF 157
Query: 138 MPNQTKDFVILCRQKYQ----LNVEGLMCI---PPAMGNPKPHFYLLSEIARECK----- 185
P T + + Q+ L GLM I G + LL + +
Sbjct: 158 AP--TAEAIAPMVQRLLASPVLRPVGLMTIGANTSDAGAVRDSLQLLRRLRDAVREQTGA 215
Query: 186 --LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L +LSMGM+ D E+A+ GAT VR+GS IFG RP
Sbjct: 216 EHLAELSMGMSGDLEIAVEEGATIVRVGSAIFGARPA 252
>gi|332705066|ref|ZP_08425151.1| pyridoxal phosphate enzyme, YggS family [Lyngbya majuscula 3L]
gi|332356243|gb|EGJ35698.1| pyridoxal phosphate enzyme, YggS family [Lyngbya majuscula 3L]
Length = 240
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 99/203 (48%), Gaps = 9/203 (4%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
K +V L+AVSK V +K+R A G F EN+LQEA K L+ + FIG LQ
Sbjct: 37 KPNVRLIAVSKTVSVEKMREAYGAGIRDFGENRLQEACAKQEQLKDLEGISWHFIGHLQK 96
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK V D I +V K A L+ + ++ V +Q+ + K G Q +
Sbjct: 97 NKAKLAVQTMDWIHSVDDLKLAQSLNRRANELNKRPKVCLQIKILPDPNKYGWSVEQLLE 156
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR---------ECKLTKLSMGMTR 195
+ L+++GLM I P + F E+A+ + L ++SMGM+
Sbjct: 157 TLPELEACDSLDIQGLMTILPLELSEAEIFDAFVEVAKFKEQLNQTTQLNLKEVSMGMSG 216
Query: 196 DFELAIASGATSVRIGSGIFGER 218
D+ AI +GAT +R+GS IFG+R
Sbjct: 217 DYLQAIKAGATMIRLGSKIFGKR 239
>gi|302763195|ref|XP_002965019.1| hypothetical protein SELMODRAFT_83798 [Selaginella moellendorffii]
gi|300167252|gb|EFJ33857.1| hypothetical protein SELMODRAFT_83798 [Selaginella moellendorffii]
Length = 244
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 108/227 (47%), Gaps = 18/227 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ +++ +A + R V++VAVSK IR G F EN QE +K
Sbjct: 15 LRSVYERVRVAAERSGRSASQVNVVAVSKTKPVSLIREVYDAGHRHFGENYAQEFIEKAP 74
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVS----LFDVIETVSREKTASLLSLEM-IKQSRFLP 121
L D++ FIG LQSNK +V+ L+ ++E + K ASLL + + Q L
Sbjct: 75 QLPS--DIRWHFIGHLQSNKAKSLVANVPQLY-MVEGIDNFKVASLLDRAVSLLQRNPLK 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +QVNT E KSG+ P+ + + L GLM I P +
Sbjct: 132 VLVQVNTSGEESKSGVEPSACVELAKQIKADCPNLEFSGLMTIGMQDYTSTPENFKALLN 191
Query: 181 ARE--CKL-------TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
RE CK +LSMGM+ DFE AI G+T+VRIGS IFG R
Sbjct: 192 CREDVCKALEIPQSSCELSMGMSGDFEQAIEMGSTNVRIGSTIFGAR 238
>gi|255084663|ref|XP_002508906.1| predicted protein [Micromonas sp. RCC299]
gi|226524183|gb|ACO70164.1| predicted protein [Micromonas sp. RCC299]
Length = 249
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 106/222 (47%), Gaps = 29/222 (13%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRF 78
A+ + LVAVSK +++R GQ F EN +QE K +P W F
Sbjct: 23 ARASTNPARLVAVSKTKPVEQLRECYDAGQRCFGENYVQEIVEKAPQMPPDTVW----HF 78
Query: 79 IGSLQSNKVSEIVS---LFDVIETVSREKTASLLSLE----MIKQSRF----LPVYIQVN 127
IG LQSNKV +V+ V+ETV K A+ L+ + +++R L V +QVN
Sbjct: 79 IGHLQSNKVKALVTGVPSLAVVETVDTVKLANKLNTAVGEFLEERARVGAGKLGVMVQVN 138
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCI--PPAMGNPKPHFYLLSE----- 179
T E K G+ PN R + L GLM I P P+ +F L+
Sbjct: 139 TSGEESKFGVEPNDCLPLARHIRDECSNLAFRGLMTIGMPDYTSRPE-NFQTLAACRDEV 197
Query: 180 ---IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K +LSMGM+ DFE AI G+ +VR+GS IFG R
Sbjct: 198 CAGLGLDAKDVELSMGMSGDFESAIEMGSDNVRVGSTIFGAR 239
>gi|163788570|ref|ZP_02183015.1| hypothetical protein FBALC1_10052 [Flavobacteriales bacterium
ALC-1]
gi|159875807|gb|EDP69866.1| hypothetical protein FBALC1_10052 [Flavobacteriales bacterium
ALC-1]
Length = 219
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 98/204 (48%), Gaps = 14/204 (6%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ V+LVAVSK + A + GQ IF ENK+QE K+ + K D++ IG +Q N
Sbjct: 16 EHVTLVAVSKTKPISDLMEAYNAGQRIFGENKIQEMVDKYGQMPK--DIEWHMIGHVQRN 73
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN----- 140
KV + +I V K ++ + K +R + +Q+ E K G+
Sbjct: 74 KVKYMAEFVSLIHGVDSFKLLKEINKQAKKHNRVINCLLQIKIAEEDSKFGMSAEDASTL 133
Query: 141 -QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE-----CKLTKLSMGMT 194
Q+ +F L + + V G+ MG + F L ++ KL +SMGM+
Sbjct: 134 LQSDEFSEL-QHTNVVGVMGMATFTNNMGQIEKEFKFLKSTFQKLKTLNSKLATISMGMS 192
Query: 195 RDFELAIASGATSVRIGSGIFGER 218
D++LAI G+T +R+GS IFG R
Sbjct: 193 GDYQLAIECGSTMIRVGSSIFGSR 216
>gi|227833486|ref|YP_002835193.1| hypothetical protein cauri_1662 [Corynebacterium aurimucosum ATCC
700975]
gi|262184474|ref|ZP_06043895.1| hypothetical protein CaurA7_10813 [Corynebacterium aurimucosum ATCC
700975]
gi|227454502|gb|ACP33255.1| hypothetical protein cauri_1662 [Corynebacterium aurimucosum ATCC
700975]
Length = 236
Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 16/224 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + I+ A A+RP + L+ V+K ++ I + G AEN+ QEA+ K
Sbjct: 16 LERTRADIQRFAEAARRP--APQLLPVTKFHPAEDIALLAELGITDVAENREQEARAKAE 73
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS------LLSLEMIKQSRFL 120
L +++ IG +Q+ K + + + ++ EK A L+ E ++ L
Sbjct: 74 AL---PEMRFHMIGQVQTKKANHVARWAHSVHSLDSEKLARGLDRGVALAQERGQRQDSL 130
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
PVYIQV+ + + G V + L + G M +PP P F + +
Sbjct: 131 PVYIQVSADGDTARGGCPLEDVPALVEVVDDLENLQLCGFMVVPPLESEPAEVFAQVRAL 190
Query: 181 AREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E + K+S GM+ D E AIASG VR+G+GI GERP
Sbjct: 191 TDEAAAKLGRDLKMSAGMSADMEAAIASGTDIVRVGTGIMGERP 234
>gi|167752132|ref|ZP_02424259.1| hypothetical protein ALIPUT_00374 [Alistipes putredinis DSM 17216]
gi|167660373|gb|EDS04503.1| hypothetical protein ALIPUT_00374 [Alistipes putredinis DSM 17216]
Length = 221
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 99/203 (48%), Gaps = 15/203 (7%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V LVAVSK +++I A GQ IF EN+ QE +K+ L K D++ IG LQ+NKV
Sbjct: 18 VELVAVSKTYPAQRIMEAYEAGQRIFGENRPQEMAQKYEELPK--DIEWHLIGHLQTNKV 75
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV- 146
+V +I ++ + A + R + V ++++ E KSG + +++V
Sbjct: 76 KMVVPFVAMIHSLDSVRLAEAIQKAAAAAGRTIDVLLEIHVADEESKSGWEWAELQEYVR 135
Query: 147 --ILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAREC------KLTKLSMGMTR 195
R L V G+M + G+ + F L E + LS+GM+
Sbjct: 136 SGAFARLP-NLRVRGVMGVATNTGDEQVIRRDFAALQRYKSELSPYFGPEFDTLSIGMSH 194
Query: 196 DFELAIASGATSVRIGSGIFGER 218
D+ +A+ GAT VRIGS IFG R
Sbjct: 195 DYRIALEYGATLVRIGSLIFGAR 217
>gi|116627606|ref|YP_820225.1| hypothetical protein STER_0778 [Streptococcus thermophilus LMD-9]
gi|116100883|gb|ABJ66029.1| Predicted enzyme with a TIM-barrel fold [Streptococcus thermophilus
LMD-9]
Length = 227
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 30/231 (12%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
NK V+ Q ++ + A R + V+++AV+K V S+ + G AEN++ + K
Sbjct: 6 NKNDVY-QAVKRACEKANRSSEEVNIIAVTKYVSSEIAEELVETGIKHIAENRVDKFLDK 64
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ L+K +D+ IG+LQ KV ++++L D + K A + + + ++
Sbjct: 65 YQTLKK-YDLTWHLIGTLQRRKVKDVINLVDYFHALDSVKLAEEIQK---RADHTINCFL 120
Query: 125 QVNTGYEIQKSGIMP-------NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
QVN E K G P NQ K+ +C + GLM + P N + +
Sbjct: 121 QVNVSGEESKHGFSPEELDTVLNQIKNLDKIC-------IVGLMTMAPIDANTQELDKIF 173
Query: 178 SEIA------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E ++ KL +LSMGM+RD+++AI +G+T VRIGS F E
Sbjct: 174 AETNELRQSIQDKKLKNVPCDQLSMGMSRDYDMAIQNGSTFVRIGSAFFKE 224
>gi|225682299|gb|EEH20583.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
gi|226289680|gb|EEH45164.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 302
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 112/244 (45%), Gaps = 53/244 (21%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVI-FAENKLQE--AKKKWIPLRKEWDVQLRF 78
+RP V LVAVSK+ + I++ S + F EN LQE K K +P W F
Sbjct: 58 QRP---VRLVAVSKLKPASDIQILHSHDPSLHFGENYLQELLEKSKILPCGIRW----HF 110
Query: 79 IGSLQSNK---VSEIVSLFDVIETVSREKTASLLSL-----------------EMIKQSR 118
IG LQSNK ++ V +E+V EK ASLL + +
Sbjct: 111 IGGLQSNKCVTLARDVRGLWAVESVDTEKKASLLDRGWGERDVDVNEEGGEKGQSVNAGN 170
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCI-------PPAMGNP 170
L V++QVNT E KSG+ P + R+K +L ++GLM I + N
Sbjct: 171 RLRVFVQVNTSGEESKSGVKPAEAVSLCRFIREKCPRLKLQGLMTIGAIARSKATTVENE 230
Query: 171 KPHFYLLSE----IARECKL-----------TKLSMGMTRDFELAIASGATSVRIGSGIF 215
F L E + +E +L +LSMGM+ DFE AIA G+ VR+GS IF
Sbjct: 231 NEDFVCLRETRDMVEKELELVADEGEGEAEGLELSMGMSEDFEGAIAMGSNQVRVGSTIF 290
Query: 216 GERP 219
G RP
Sbjct: 291 GVRP 294
>gi|318042389|ref|ZP_07974345.1| hypothetical protein SCB01_11801 [Synechococcus sp. CB0101]
Length = 224
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 101/210 (48%), Gaps = 12/210 (5%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL 76
+AI A+ P S L+AVSK + IR GQ F E++LQEA K L +
Sbjct: 11 AAIRAQLPA-STQLLAVSKGHPAAAIRELAGLGQRSFGESRLQEAAPKQDELADLPGLDW 69
Query: 77 RFIGSLQSNKVSEIVSLFDVIETVSR----EKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
FIG LQ+NKV ++ F + +V E+ A + E + V +QV +
Sbjct: 70 HFIGRLQANKVRPVLQRFAWLHSVDSLPLAERVARIAQEEGVSPK----VLLQVKLRPDP 125
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECKLTKL 189
K G P + + L + GLM + P + F+ + +ARE L +L
Sbjct: 126 AKGGFEPEALRQAWPQLQALPALQLVGLMTMAPLGLDAAERQSLFHDCAALARELGLEQL 185
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERP 219
SMGM+ D+ A A+G++ VRIGS +FG +P
Sbjct: 186 SMGMSGDWREAAAAGSSWVRIGSALFGPKP 215
>gi|254414846|ref|ZP_05028610.1| conserved hypothetical protein TIGR00044 [Microcoleus
chthonoplastes PCC 7420]
gi|196178335|gb|EDX73335.1| conserved hypothetical protein TIGR00044 [Microcoleus
chthonoplastes PCC 7420]
Length = 223
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 103/206 (50%), Gaps = 12/206 (5%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
P D V L+AV+K V + IR A G F E+++QEA K L+ D+ IG LQ
Sbjct: 17 PPD-VRLIAVTKRVSVEAIREAYQAGVRDFGESQVQEAAAKQDELQDLPDITWHLIGHLQ 75
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
SNK + ++ F I + K A L+ + + + +QV + K G +
Sbjct: 76 SNKAKKALTQFQWIHSCDSLKLAQRLNQLACELAVSPQICLQVKIMPDPHKYGWTIPELL 135
Query: 144 DFVILCRQKYQLNVEGLMCIPP-------AMGNPKPHFYLLSEIARE----CKLTKLSMG 192
+ + Q L ++GLM IPP +G + L +EI ++ ++ +LSMG
Sbjct: 136 EALPELDQCKALQIQGLMTIPPLGLSRQETLGVFERTRDLANEIGQQNWSNLRMHQLSMG 195
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D+ LAI +GAT VR+G IFGER
Sbjct: 196 MSEDYALAIQAGATMVRLGRIIFGER 221
>gi|55820802|ref|YP_139244.1| hypothetical protein stu0736 [Streptococcus thermophilus LMG 18311]
gi|55822703|ref|YP_141144.1| hypothetical protein str0736 [Streptococcus thermophilus CNRZ1066]
gi|55736787|gb|AAV60429.1| conserved hypothetical protein [Streptococcus thermophilus LMG
18311]
gi|55738688|gb|AAV62329.1| conserved hypothetical protein [Streptococcus thermophilus
CNRZ1066]
Length = 227
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 30/231 (12%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
NK V+ Q ++ + A R + V+++AV+K V S+ + G AEN++ + K
Sbjct: 6 NKNDVY-QAVKRACEKANRSSEEVNIIAVTKYVSSEIAEELVETGIKHIAENRVDKFLDK 64
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ L+K +D+ IG+LQ KV ++++L D + K A + + + ++
Sbjct: 65 YQALKK-YDLTWHLIGTLQRRKVKDVINLVDYFHALDSVKLAEEIQK---RADHTINCFL 120
Query: 125 QVNTGYEIQKSGIMP-------NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
QVN E K G P NQ K+ +C + GLM + P N + +
Sbjct: 121 QVNVSGEESKHGFSPEELDTVLNQIKNLDKIC-------IVGLMTMAPIDANTQELDKIF 173
Query: 178 SEIA------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E ++ KL +LSMGM+RD+++AI +G+T VRIGS F E
Sbjct: 174 AETNELRQSIQDKKLKNVPCDQLSMGMSRDYDIAIQNGSTFVRIGSAFFKE 224
>gi|242089533|ref|XP_002440599.1| hypothetical protein SORBIDRAFT_09g003850 [Sorghum bicolor]
gi|241945884|gb|EES19029.1| hypothetical protein SORBIDRAFT_09g003850 [Sorghum bicolor]
Length = 243
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 101/210 (48%), Gaps = 24/210 (11%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SV +VAVSK IR G F EN +QE K L + D++ FIG+LQSNK
Sbjct: 34 SVRVVAVSKTKPVPVIRGVYDAGHRCFGENYVQELIDKAPQLPE--DIEWHFIGNLQSNK 91
Query: 87 VSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FLPVYIQVNTGYEIQKSGIMPNQT 142
+ V D++E+V EK AS L + R L V +QVNT E K G+ P+
Sbjct: 92 ARALLAGVPNLDMVESVDDEKIASRLDRVVADLGRKPLKVLVQVNTSGEESKFGVDPSGC 151
Query: 143 KDFVILCRQKYQLNV-----EGLMCIPPAMGNPKPHFYLLSEIARE--CK-------LTK 188
+ + +LN GLM I + P + RE CK +
Sbjct: 152 VELA----KHVKLNCPNLVFSGLMTIGMLDYSSTPENFKTLANCREGVCKELGIPEEQCE 207
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 208 LSMGMSADFEQAIEMGSTNVRVGSTIFGAR 237
>gi|239931813|ref|ZP_04688766.1| hypothetical protein SghaA1_26572 [Streptomyces ghanaensis ATCC
14672]
gi|291440182|ref|ZP_06579572.1| alanine racemase domain-containing protein [Streptomyces ghanaensis
ATCC 14672]
gi|291343077|gb|EFE70033.1| alanine racemase domain-containing protein [Streptomyces ghanaensis
ATCC 14672]
Length = 239
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 24/212 (11%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW-----IPLRKEWDVQLRFIG 80
D V+L+ V+K + +R+ G AEN+ Q+A K +PL W F+G
Sbjct: 31 DEVTLIVVTKTFPASDVRLLSELGVRHVAENRDQDAAPKAAQCADLPL--TW----HFVG 84
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV----NTGYEIQKSG 136
LQ+NKV +V V+ +V R + + LS E ++ R + +QV G ++ G
Sbjct: 85 QLQTNKVRSVVGYAGVVHSVDRARLVTALSREAVRSGREVGCLVQVALDAGEGGRGERGG 144
Query: 137 IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPHFYLLSEIA---RECKLTK- 188
+ P + L L ++GLM + P G + F L +++ R+ T
Sbjct: 145 VAPGGVAELAALVAGAEGLRLDGLMTVAPLTGEYAGRQQAAFERLVDLSTALRKAHPTAN 204
Query: 189 -LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+S GM+ D E A+A+GAT VR+GS + G RP
Sbjct: 205 MVSAGMSTDLEQAVAAGATHVRVGSAVLGVRP 236
>gi|291484089|dbj|BAI85164.1| hypothetical protein BSNT_02539 [Bacillus subtilis subsp. natto
BEST195]
Length = 230
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ ++I + + R D V+++AV+K V ++ + A+ G EN+ E
Sbjct: 1 MRVVDNLRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAE 60
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K++ + EW FIGSLQS K +V+ I ++ R L+ E+ K++
Sbjct: 61 LLRKQELMKGNPEW----HFIGSLQSRKAKSVVNAVSYIHSLDRLS----LAKEIEKRAE 112
Query: 119 -FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
+ ++QVNT E K G+ + F+ + V GLM + P + + F
Sbjct: 113 GTVRCFVQVNTSLEPSKHGMKKEEVIPFIQELSGFEHILVAGLMTMAPLTDDQDQIRSCF 172
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L E+ + + T+LSMGM+ DFE+AI GAT +RIGS + G
Sbjct: 173 RSLRELRDQVQKLNQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVG 222
>gi|254584384|ref|XP_002497760.1| ZYRO0F12870p [Zygosaccharomyces rouxii]
gi|238940653|emb|CAR28827.1| ZYRO0F12870p [Zygosaccharomyces rouxii]
Length = 274
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 111/217 (51%), Gaps = 29/217 (13%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSN 85
V L+AVSK+ + I++ G F EN +QE K K +P D+Q FIG LQ+N
Sbjct: 60 VLLLAVSKLKPASDIQILYDHGVRHFGENYVQELIEKSKLLP----QDIQWHFIGGLQTN 115
Query: 86 KVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
K ++ + ++ +ET+ K A L+ ++ + + IQ+NT E QKSG + N+ +
Sbjct: 116 KCKDLAKVTNIRYVETIDSLKKAKKLNETRVEGAPVILCNIQINTSDESQKSG-LSNEKE 174
Query: 144 DF----VILCRQKYQLNVEGLMCI---------PPAMGNPKPHFYLL----SEIARECKL 186
F L + + +EGL+ I P + N F L S+I + +
Sbjct: 175 IFELVEFFLSPESKNVQLEGLLTIGSWDSSHSDDPNVDNAD--FSTLAHWKSKIDEKFGI 232
Query: 187 T-KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
KLSMGM+ DF+ A+ G++ +RIG+ IFG RP +
Sbjct: 233 NLKLSMGMSADFKQAVRQGSSEIRIGTDIFGTRPAKA 269
>gi|327458763|gb|EGF05111.1| cell division protein YlmE [Streptococcus sanguinis SK1057]
Length = 223
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 19/228 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ E ++ IGSLQ KV ++++ D + K A + + +
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDK---RAEHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKP---HFY 175
++QVN E K G + + + V+L + NV+ GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFLIEELE--VVLPELEKLENVQIVGLMTMAPFEASHEELNQMFE 174
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 175 KAHQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|332659862|gb|AEE85262.1| putative pyridoxal phosphate-dependent enzyme, YBL036C type
[Arabidopsis thaliana]
Length = 254
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 100/220 (45%), Gaps = 26/220 (11%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R + V ++ VSK IR G F EN +QE K L + D++ F+G L
Sbjct: 30 RDPERVRVLPVSKTKPVSLIRQIYDAGHRCFGENYVQEIIDKAPQLPE--DIEWHFVGHL 87
Query: 83 QSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQVNTGYEIQKSGIM 138
QSNK + V ++ V EK A+ L + R L V +QVNT E+ KSGI
Sbjct: 88 QSNKAKTLLTGVPNLAMVHGVDGEKVANHLDRAVSNLGRHPLKVLVQVNTSGEVSKSGIE 147
Query: 139 PNQTKDFVILCRQK-YQLNVEGLMCI--PPAMGNP----------KPHFYLLSEIARECK 185
P+ + + L GLM I P P KP L + A CK
Sbjct: 148 PSSVVELARHVKHHCPNLVFSGLMTIGMPDYTSTPENFRVYSFPHKPGQTLSNCRADVCK 207
Query: 186 LT-------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ DFELAI G+T+VR+GS IFG R
Sbjct: 208 ALGMAEDQFELSMGMSGDFELAIEMGSTNVRVGSTIFGPR 247
>gi|296331114|ref|ZP_06873588.1| hypothetical protein BSU6633_08431 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305674269|ref|YP_003865941.1| hypothetical protein BSUW23_07920 [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296151758|gb|EFG92633.1| hypothetical protein BSU6633_08431 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305412513|gb|ADM37632.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 230
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 109/224 (48%), Gaps = 22/224 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKK 64
L+ ++I + + R D V+++AV+K V ++ + A+ G EN+ E K++
Sbjct: 7 LRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAELLRKQE 66
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR-FLPVY 123
I EW FIGSLQS K +V+ I ++ R L+ E+ K++ + +
Sbjct: 67 MIKGDPEW----HFIGSLQSRKAKAVVNSVSYIHSLDRLS----LAKEIEKRAEGTVQCF 118
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVNT E K G+ + F+ + V GLM + P + + F L E+
Sbjct: 119 VQVNTSLEPSKHGMKKEEVIPFIQELSGFEHIVVAGLMTMAPLTDDQDEIRSCFRALREL 178
Query: 181 ARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ + T+LSMGM+ DFE+AI GAT +RIGS + G
Sbjct: 179 RDQVQELKQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVG 222
>gi|295399727|ref|ZP_06809708.1| alanine racemase domain protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|312111754|ref|YP_003990070.1| alanine racemase domain protein [Geobacillus sp. Y4.1MC1]
gi|294978130|gb|EFG53727.1| alanine racemase domain protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|311216855|gb|ADP75459.1| alanine racemase domain protein [Geobacillus sp. Y4.1MC1]
Length = 225
Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 107/233 (45%), Gaps = 28/233 (12%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + ++ IE + R + +VAV+K V ++ + AL G EN+
Sbjct: 1 MTVRDNLAIIRENIEAACQRVGRDPADIRIVAVTKYVSVERAKEALEAGITDLGENRDDG 60
Query: 61 AKKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K+ L E W FIG+LQS KV I+ D I ++ R A + K+
Sbjct: 61 LLQKYEALGNEPTW----HFIGTLQSRKVKHIIDKVDYIHSLDRMSLAKEIEKRATKR-- 114
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+ ++QVN E K G+ + F+ R ++ V GLM + P + +L
Sbjct: 115 -MKCFVQVNVSGEATKHGLAKEEVIPFIEQLRDFSRIEVIGLMTMAPYTDDES----VLR 169
Query: 179 EIARECKL---------------TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
R+ KL T+LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 170 SCFRQLKLLQENVQALHIPNAPCTELSMGMSNDYVIAIEEGATFIRLGTSLVG 222
>gi|253577873|ref|ZP_04855145.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850191|gb|EES78149.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 192
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 93/192 (48%), Gaps = 8/192 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +KL + K+ IE + A R V+L+AVSK + ++ A G +F ENK+QE
Sbjct: 2 LADKLNLVKKNIEEACDTAGRSPQEVTLIAVSKTKPVEMLKEAYDAGARVFGENKVQEIV 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ + DVQ IG LQ NKV I+ +I +V + A + E K+ +PV
Sbjct: 62 DKYDQMPS--DVQWHMIGHLQRNKVKYIIDKVSMIHSVDSVRLAEAIEKEAAKKDICMPV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN E K G+ + F+ L V+GLM I P + NP+ + +
Sbjct: 120 LIEVNVAGEESKFGLSVEEVLPFLEEISSYEHLQVKGLMTIAPFVANPEENREVFQ---- 175
Query: 183 ECKLTKLSMGMT 194
KL KLS+ +
Sbjct: 176 --KLKKLSVDIA 185
>gi|269219750|ref|ZP_06163604.1| pyridoxal phosphate enzyme, YggS family [Actinomyces sp. oral taxon
848 str. F0332]
gi|269210992|gb|EEZ77332.1| pyridoxal phosphate enzyme, YggS family [Actinomyces sp. oral taxon
848 str. F0332]
Length = 299
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 31/244 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN---KLQ 59
+ + + + K+ +A A R +++VS++ +K + +++ AL G + N +L+
Sbjct: 52 IAGRWESLRDKVAAAASRAGREENAVSILLAAKFQEPERVAAALRAGGSLIGHNYIQQLE 111
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL---------S 110
E ++ L + ++ IG +Q+NK + + D IETV K A+ L +
Sbjct: 112 EGERALTELGAPFH-RVHVIGHVQANKAGKAIRAADCIETVDSPKLAARLDRLQGERISA 170
Query: 111 LEMIKQSRFL---PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM 167
E+ K L V IQVN+ + G+ P+ D L + GLM I
Sbjct: 171 GELRKDGSPLGPFDVMIQVNSAGSESQHGVDPSGVVDLAGAVADLPNLRLVGLMLIGA-- 228
Query: 168 GNPKPHFYLLSEIARECKL------------TKLSMGMTRDFELAIASGATSVRIGSGIF 215
N + + AR +L T+LSMGMT D E+AIA G+T VRIG+ +F
Sbjct: 229 -NTDDVAAVAASHARVRELRDAVQAAGVASCTELSMGMTGDMEIAIAEGSTEVRIGTAVF 287
Query: 216 GERP 219
G RP
Sbjct: 288 GPRP 291
>gi|25028604|ref|NP_738658.1| hypothetical protein CE2048 [Corynebacterium efficiens YS-314]
gi|259507662|ref|ZP_05750562.1| pyridoxal-5-phosphate dependent enzyme [Corynebacterium efficiens
YS-314]
gi|23493890|dbj|BAC18858.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259164709|gb|EEW49263.1| pyridoxal-5-phosphate dependent enzyme [Corynebacterium efficiens
YS-314]
Length = 234
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 17/227 (7%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L K++I+++ + A RP SVSL+ V+K + IR+ G EN+ QEA+ K
Sbjct: 10 NLDRVKKRIDDATVAAGRPPGSVSLLPVTKFHPVRDIRILHELGITAVGENREQEARAK- 68
Query: 66 IPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS----LEMIKQSRF- 119
+E+ ++ IG +Q+ K + + + +V + A L L + + R
Sbjct: 69 ---HQEFPAMEFHMIGQIQTKKANAVARWAAAVHSVDSVRLAEALDRGVGLALERGDRSV 125
Query: 120 --LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
LP +IQ++ + + G+ + + + L + GLMC+PP +P F
Sbjct: 126 DKLPCFIQLSLDGDTSRGGVAADTAMEVAQALEEAPHLTLTGLMCVPPLGWDPLTAFSQA 185
Query: 178 SEI--ARECKLTK---LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E+ E + S GM+ D AI G+T VR+G+ I G RP
Sbjct: 186 REVLTGMEQHFDRDMEFSAGMSGDLAEAILHGSTIVRVGTEILGSRP 232
>gi|160942923|ref|ZP_02090162.1| hypothetical protein FAEPRAM212_00400 [Faecalibacterium prausnitzii
M21/2]
gi|158445824|gb|EDP22827.1| hypothetical protein FAEPRAM212_00400 [Faecalibacterium prausnitzii
M21/2]
gi|295103910|emb|CBL01454.1| pyridoxal phosphate enzyme, YggS family [Faecalibacterium
prausnitzii SL3/3]
Length = 239
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 24/226 (10%)
Query: 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69
++K+ +A A R +V L A K ++ I + + +F EN +QE L
Sbjct: 16 IREKMAAAAREAGRDPAAVQLCAACKTRTAQTIAASAALPIDVFGENHVQE-------LC 68
Query: 70 KEWDVQL------RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
+D FIG LQ+NK+ +++ +I++V E + E K +
Sbjct: 69 ANYDAGAYCGKPSHFIGHLQTNKIKKVLGRASLIQSVDSEHLLLAIEKEAAKAGIVQDIL 128
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR- 182
++VN G E K+G P + + + V+GLM IPP + + L+++ +
Sbjct: 129 LEVNIGGEESKTGAAPELLWPLLDTAAAQQHIRVKGLMAIPPVNDDDAQNRRYLAQVYQL 188
Query: 183 ----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGM+ DFE AI GAT VRIG+ I+G R
Sbjct: 189 FVRAGERGYHNVEMQTLSMGMSGDFENAIREGATLVRIGTAIYGAR 234
>gi|328957130|ref|YP_004374516.1| hypothetical protein CAR_c08060 [Carnobacterium sp. 17-4]
gi|328673454|gb|AEB29500.1| hypothetical protein CAR_c08060 [Carnobacterium sp. 17-4]
Length = 224
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 19/206 (9%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL--RFIG 80
R + SV ++AV+K V S++ + G AEN+ + + K L D+QL +IG
Sbjct: 24 RERSSVQVIAVTKSVSSEQAIAVIEEGYTHLAENRPEGLEAKLEELN---DLQLVWHYIG 80
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+LQ+ KV ++++ D + R A +E Q R + ++QVN E+ KSG+ P+
Sbjct: 81 NLQTRKVKKVINKIDYFHALDRLALAE--EIEKRAQKR-ISCFVQVNVTGEVSKSGVSPD 137
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPK------PHFYLLSEIARECKL-----TKL 189
+ +F+ + ++ V GLM + P H L + +E T+L
Sbjct: 138 ELDEFISNLSKYSKIKVVGLMTMAPLNAEETVVRTAFAHLRGLQQTIQEKSFSHAPCTEL 197
Query: 190 SMGMTRDFELAIASGATSVRIGSGIF 215
SMGM++D+ +A GAT +RIG+ F
Sbjct: 198 SMGMSKDYTIAAEEGATFIRIGTSFF 223
>gi|229829073|ref|ZP_04455142.1| hypothetical protein GCWU000342_01158 [Shuttleworthia satelles DSM
14600]
gi|229792236|gb|EEP28350.1| hypothetical protein GCWU000342_01158 [Shuttleworthia satelles DSM
14600]
Length = 235
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 106/233 (45%), Gaps = 16/233 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ ++ I + A R V+LVAVSK I+ G F EN +QE
Sbjct: 2 LAENLKTVRENITEACRRANRDPSEVTLVAVSKTKPEADIQEIYGQGVRDFGENYVQELV 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD---VIETVSREKTASLLSLEMIKQSRF 119
+K L D++ IG LQ NKV + D +I +V + A ++++ K R
Sbjct: 62 EKIDHL--PGDIRWHMIGHLQRNKVKYLARRADSIALIHSVDTYRLAEEINIQAKKNKRI 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ + ++VN E K GI + +++ GLM P + N + +F
Sbjct: 120 IDILVEVNIADEDSKFGISREDALSLIQDIAGLDGIHIRGLMTSAPNVKNAEENRAYFRS 179
Query: 177 LSEIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ +A + ++ LSMGMT D+++AI G+T VR+G+ IFG R
Sbjct: 180 IKALAVDINSRNIDNVEMDILSMGMTNDYQIAIEEGSTMVRVGTAIFGARDYH 232
>gi|148238907|ref|YP_001224294.1| TIM-barrel fold family protein [Synechococcus sp. WH 7803]
gi|147847446|emb|CAK22997.1| Predicted enzyme with a TIM-barrel fold [Synechococcus sp. WH 7803]
Length = 216
Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 3/199 (1%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V+L+AVSK + IR ++CGQ+ F E+++QEA K L ++ FIG LQ+NK
Sbjct: 18 GVNLLAVSKGHPADAIRDLVACGQLDFGESRVQEALPKQNALADLPQIRWHFIGRLQANK 77
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V +V F I ++ A S +++ + +QV + K G + KD
Sbjct: 78 VRAVVKAFRWIHSIDSLALAERTSRIALEEQQQPTALLQVKLRDDPAKGGWEIDALKDAW 137
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTKLSMGMTRDFELAIAS 203
+ L + GLM + P + L E +A L SMGM+ D+ A A+
Sbjct: 138 PELQALQGLQISGLMTMAPLGVGAEDRSALFRECRHLADALGLEHCSMGMSGDWREAAAA 197
Query: 204 GATSVRIGSGIFGERPCQT 222
GAT VR+GS +FG R T
Sbjct: 198 GATWVRLGSVLFGPRQLPT 216
>gi|327469025|gb|EGF14497.1| cell division protein YlmE [Streptococcus sanguinis SK330]
Length = 223
Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 118/229 (51%), Gaps = 21/229 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
K+ L+ E ++ IGSLQ KV ++++ D + K A E+ K+++
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAK----EIDKRAQHV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPH---F 174
+ ++QVN E K G + + + V+L + NV+ GLM + P + + F
Sbjct: 116 IKCFLQVNISKEESKHGFLIEELE--VVLPELEKLENVQIVGLMTMAPFEASHEELNQIF 173
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 174 EKAHQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|306829912|ref|ZP_07463099.1| YggS family pyridoxal phosphate enzyme [Streptococcus mitis ATCC
6249]
gi|304427923|gb|EFM31016.1| YggS family pyridoxal phosphate enzyme [Streptococcus mitis ATCC
6249]
Length = 223
Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 25/231 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L ++ Q+I ++++ A R D+VS++AV+K VD + L G EN++ +
Sbjct: 1 MNLKKNTELVFQQIADASLEANRALDAVSVIAVTKYVDIQTAEALLPLGVRHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
+K+ L K++ V IG+LQ KV E++ D + K L+ E+ K++
Sbjct: 61 FLEKYQAL-KDYPVTWHLIGTLQRRKVKEVIPYVDYFHALDSLK----LAQEIQKRTDHV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ ++QVN E K G + + + + Q+ GLM + P + + L E
Sbjct: 116 IKCFLQVNISGEKSKHGFSKEELLELLPELAKLDQIEYVGLMTMAPFEADSEK----LKE 171
Query: 180 IARECK---------------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
I +E + +T+LSMGM+RDF+ AI G+T VRIG+ F
Sbjct: 172 IFKETQALQAEIREKQIPNMPMTELSMGMSRDFKEAIQFGSTFVRIGTAFF 222
>gi|237785348|ref|YP_002906053.1| hypothetical protein ckrop_0752 [Corynebacterium kroppenstedtii DSM
44385]
gi|237758260|gb|ACR17510.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM
44385]
Length = 249
Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 19/237 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++L ++I +A A R + L+ V+K + ++ CG + EN+ QEA+
Sbjct: 11 LSSRLDEVSRRIARAAESAGRDPKDIELLPVTKFHPYEDLQALADCGVTVVGENREQEAR 70
Query: 63 KKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ----S 117
K L ++ + + IG +QS K + I + TV R K L M +
Sbjct: 71 DKARRLGEDGVGLHIDMIGQVQSKKTNHIARWAHRVHTVDRLKIVHGLDNGMKRALDAGD 130
Query: 118 RF---------LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG 168
R LPV+IQ + + + G + L +EGLM +PP
Sbjct: 131 RVSTQHENVDELPVFIQWSADGDPSRGGAKEDDLDSLADAVNSSQYLTLEGLMVVPPRDD 190
Query: 169 NPKPHFYLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ F +E++ + LS GM+ D E AIA+G+T VR+G+ I G RP
Sbjct: 191 DSAQVFARAAELSEAIRQKHEGRGGLSAGMSGDLENAIAAGSTVVRVGTAILGSRPV 247
>gi|169351607|ref|ZP_02868545.1| hypothetical protein CLOSPI_02387 [Clostridium spiroforme DSM 1552]
gi|169291829|gb|EDS73962.1| hypothetical protein CLOSPI_02387 [Clostridium spiroforme DSM 1552]
Length = 220
Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 11/199 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ V L+A +K V +I + G + F EN++Q +K+ + + + IG+LQ N
Sbjct: 23 NDVKLIAATKYVGIDEINKLENLGVMYFGENRVQAFLEKY--QKYNGNCKFHMIGTLQPN 80
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV I+ D+I +V + + K + + V IQVN E K G + ++
Sbjct: 81 KVKYIIDKVDLIHSVDSYSLIKEIEKQANKHNLVMKVLIQVNISKEESKHGFKVEEIEEV 140
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKP--HFYLLSEIARECK-------LTKLSMGMTRD 196
+ + V+GLM + P + K +F L ++ + K LT+LSMGM+ D
Sbjct: 141 FDTLKNYPHIEVKGLMMMAPNIEAEKTREYFKLTQDLFNQLKIKYPEYSLTELSMGMSND 200
Query: 197 FELAIASGATSVRIGSGIF 215
+++A+ GAT VRIGS +F
Sbjct: 201 YKIALEYGATMVRIGSSLF 219
>gi|212275792|ref|NP_001130828.1| hypothetical protein LOC100191932 [Zea mays]
gi|194690222|gb|ACF79195.1| unknown [Zea mays]
Length = 243
Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 103/210 (49%), Gaps = 24/210 (11%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SV +VAVSK IR G F EN +QE K L + D++ FIG+LQSNK
Sbjct: 34 SVRVVAVSKTKPVPVIRGVYDAGHRCFGENYVQELIDKAPQLPE--DIEWHFIGNLQSNK 91
Query: 87 VSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FLPVYIQVNTGYEIQKSGIMPNQT 142
+ V D++E+V EK A+ L + R L V +QVNT E K G+ P+
Sbjct: 92 ARALLAGVPNLDMVESVDDEKIANRLDRVVADLGRKPLKVLVQVNTSGEESKFGVDPSGC 151
Query: 143 KDFVILCRQKYQLNV-----EGLMCIPPAMGNPKP-HFYLLSEIARE-CK-------LTK 188
+ + +LN GLM I + P +F L+ E CK +
Sbjct: 152 MELA----KHVKLNCPNLVFSGLMTIGMLDYSSTPENFKALANCREEVCKELGIPEEQCE 207
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 208 LSMGMSADFEQAIEMGSTNVRVGSTIFGAR 237
>gi|260655189|ref|ZP_05860677.1| pyridoxal phosphate enzyme, YggS family [Jonquetella anthropi E3_33
E1]
gi|260630111|gb|EEX48305.1| pyridoxal phosphate enzyme, YggS family [Jonquetella anthropi E3_33
E1]
Length = 230
Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 104/222 (46%), Gaps = 19/222 (8%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVI-FAENKLQEAKKKWIPLRK 70
+I +A + R + V+LVAVSK I A+ G + EN++QE +K IP
Sbjct: 13 DRISQAAARSGRKRGDVTLVAVSKTKPLDMIIRAVQTGLITDLGENRVQEGMEK-IP--- 68
Query: 71 EWD-----VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
W V+ IG LQ NK + + LF I++V K A L + PV ++
Sbjct: 69 AWPAGLPPVKWHLIGQLQRNKARKALELFHSIQSVDSVKLAQRLQDIAAELGVRRPVLLE 128
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
VNT E KSG Q +L+ +GLM + P + + F L + A
Sbjct: 129 VNTSLEESKSGCALADAPIIADALVQCGRLDWQGLMTVGPLTDDKDQIRRSFAALRDCAE 188
Query: 183 ECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D+ELAI G+T VR+G+ IFG R
Sbjct: 189 GLRKRTGLSLPVLSMGMSGDYELAIEEGSTMVRVGTAIFGAR 230
>gi|256545127|ref|ZP_05472493.1| YlmE protein [Anaerococcus vaginalis ATCC 51170]
gi|256399168|gb|EEU12779.1| YlmE protein [Anaerococcus vaginalis ATCC 51170]
Length = 224
Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 109/231 (47%), Gaps = 26/231 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + + K+ +EN +L+AV+K KI + G F ENK+QE
Sbjct: 1 MSIKDNIDDLKKDLENY---------DANLLAVTKTHGIDKIMEVYNYGLRDFGENKVQE 51
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
KK+ +P D+ IG LQ+NKV++IV +I +V K ++ S
Sbjct: 52 LIEKKEKMP----EDINWHLIGHLQTNKVNKIVGEVSLIHSVDSLKILKKINSRAKSLSI 107
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-------- 170
IQVN E KSG ++ + + +N++GLM + P +
Sbjct: 108 VQDCLIQVNISKEETKSGFFVDEIDKVIEEASKLDNINIKGLMTMAPNTEDENLIRNCFR 167
Query: 171 --KPHFYLLSEIA-RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K F LS ++ ++ LSMGMT D+++A+ GA +R+GS IFG+R
Sbjct: 168 ELKKIFEKLSNLSYNNIEMKYLSMGMTHDYKIALEEGANIIRVGSKIFGKR 218
>gi|257056711|ref|YP_003134543.1| pyridoxal phosphate enzyme, YggS family [Saccharomonospora viridis
DSM 43017]
gi|256586583|gb|ACU97716.1| pyridoxal phosphate enzyme, YggS family [Saccharomonospora viridis
DSM 43017]
Length = 244
Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 106/232 (45%), Gaps = 17/232 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ +IE + R D V L+AV+K + L G EN+ QEA
Sbjct: 9 LATALRKITDRIEQACRRVGRSPDEVRLIAVTKTFPATDAAALLDLGVRNLGENRDQEAV 68
Query: 63 KKWIP---LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS------LEM 113
K LR + DV+ +G LQ NK + +++V + A L+ LE
Sbjct: 69 AKVREVGQLRPDADVRWHMVGRLQRNKARSVARWAAEVQSVDSLRLADALTKAVRAALEA 128
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIPPAMGNPK 171
++ R L V +Q + + + G + + VI R Y L + G+M + P +P+
Sbjct: 129 GERDRPLDVLVQASLDDDPSRGGCPIDDLSELADVIAQRGDY-LRLRGVMAVAPLGVDPE 187
Query: 172 PHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P F L+ +A + T++S GM+ D + AIA G+T VR+G+ + G R
Sbjct: 188 PAFERLAAVAERLRKDHPEATEISAGMSGDLDQAIAYGSTCVRVGTALLGGR 239
>gi|313203129|ref|YP_004041786.1| alanine racemase domain protein [Paludibacter propionicigenes WB4]
gi|312442445|gb|ADQ78801.1| alanine racemase domain protein [Paludibacter propionicigenes WB4]
Length = 222
Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 99/205 (48%), Gaps = 16/205 (7%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V LV VSK ++ I A G+ IF E+K+QE K+ L K D+ FIG LQ+NK+
Sbjct: 18 VRLVCVSKFNPNESILEAYETGERIFGESKVQELCGKYETLPK--DIVWHFIGHLQTNKI 75
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
IV +I V K + + + K + + +QV+ E K G+ P++ +
Sbjct: 76 RYIVPFISLIHGVDSYKLLTEIDKQAAKAGKTVHCLLQVHIAQEETKFGLSPDELLEMFE 135
Query: 148 LCRQKYQLNVE--GLMCIPPAMGNP---KPHFYLLSEI---------ARECKLTKLSMGM 193
K N++ GLM + N + F L + + E +LSMGM
Sbjct: 136 AGAWKQLKNIQICGLMGMATYTVNKDQIRREFNGLKTLFDQVKQQYFSNETSFCELSMGM 195
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ DF++AI G+T VR+GS IFG R
Sbjct: 196 SDDFQIAIEEGSTLVRVGSSIFGHR 220
>gi|22536659|ref|NP_687510.1| ylmE protein [Streptococcus agalactiae 2603V/R]
gi|22533498|gb|AAM99382.1|AE014213_21 ylmE protein, putative [Streptococcus agalactiae 2603V/R]
Length = 224
Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 109/223 (48%), Gaps = 18/223 (8%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
NK +F + A+ A R +SV +VAV+K V+ + + G EN++ + +K
Sbjct: 7 NKTAIF-DNVSKLALKAGRAHESVHIVAVTKYVNCQTTEALIRTGVNHIGENRVDKFLEK 65
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RFLPVY 123
+ L+ E + IGSLQ KV ++++ D + K A+ E+ K + + + +
Sbjct: 66 YQALKDE-KLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAA----EIQKHAQKLIKCF 120
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--- 180
+QVN E K G Q D + L + ++ + G+M + P + + E
Sbjct: 121 LQVNISREDSKHGFTIEQIDDALNLISRYDKIELIGIMTMAPLKATKEEISSIFEETESL 180
Query: 181 -----ARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
AR + T+LSMGM+RD+++AI +G+T VRIG+ F
Sbjct: 181 RKRLQARNIERMPFTELSMGMSRDYDIAIQNGSTFVRIGTSFF 223
>gi|299535879|ref|ZP_07049199.1| hypothetical protein BFZC1_07645 [Lysinibacillus fusiformis ZC1]
gi|298728631|gb|EFI69186.1| hypothetical protein BFZC1_07645 [Lysinibacillus fusiformis ZC1]
Length = 255
Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 106/211 (50%), Gaps = 24/211 (11%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
R + V ++AV+K V K+ + A+ G + EN+ + +K + +V +IG
Sbjct: 43 GNREGEKVQIIAVTKEVSVKRTQEAIEAGLIHLGENRPEGLHRKITDIHA--NVHWHYIG 100
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSL-EMIKQSRFLPV--YIQVNTGYEIQKSGI 137
SLQ+ KV ++++ D + ++ R LSL E I++ PV ++QVN E K G+
Sbjct: 101 SLQTRKVKQVINSIDYLHSLDR------LSLAEEIEKRAEQPVKCFVQVNVSGEESKHGL 154
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK------------ 185
+ FV + ++ V GLM + P N + ++ ++C+
Sbjct: 155 TIEEVLPFVEALKGFTKIQVVGLMTMAPNTENEAIIRSVFKQL-KQCQQQIAEQGFAHAP 213
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
T+LSMGM+ DFE+A+ GAT VR+G+ + G
Sbjct: 214 CTELSMGMSNDFEIAVEEGATFVRVGTALVG 244
>gi|288802419|ref|ZP_06407858.1| pyridoxal phosphate enzyme, YggS family [Prevotella melaninogenica
D18]
gi|288334947|gb|EFC73383.1| pyridoxal phosphate enzyme, YggS family [Prevotella melaninogenica
D18]
Length = 223
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 106/214 (49%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+L P D V LVA+SK ++ + VA GQ IF E+++QE +K L K D++ F
Sbjct: 11 VLGNLP-DGVKLVAISKFHPNEYLEVAYREGQRIFGESQVQELSRKVETLPK--DIEWHF 67
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NKV I ++E V K ++ + K +R + V ++++ E K G
Sbjct: 68 IGHLQTNKVKYIAPYISMVEAVDSLKLLKEINKQAAKYNRVINVLLELHIAEEETKYGFT 127
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNP---KPHFYLLSEIARECK-------- 185
P+ ++ + K NV GLM + + + K L +++ E K
Sbjct: 128 PDACRELLESGEWKELKNVHISGLMMMASNVDDRNQIKKEMMLAADLFDELKAKYFADDP 187
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ S GM+ D+++A+ +T VR+G+ IFG R
Sbjct: 188 EFKERSWGMSHDYDIAVECRSTMVRVGTTIFGPR 221
>gi|16078602|ref|NP_389421.1| hypothetical protein BSU15380 [Bacillus subtilis subsp. subtilis
str. 168]
gi|221309412|ref|ZP_03591259.1| hypothetical protein Bsubs1_08506 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313737|ref|ZP_03595542.1| hypothetical protein BsubsN3_08442 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318661|ref|ZP_03599955.1| hypothetical protein BsubsJ_08376 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322934|ref|ZP_03604228.1| hypothetical protein BsubsS_08482 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|3183467|sp|O31727|YLME_BACSU RecName: Full=UPF0001 protein ylmE
gi|2633911|emb|CAB13412.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. 168]
Length = 230
Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ ++I + + R D V+++AV+K V ++ + A+ G EN+ E
Sbjct: 1 MRVVDNLRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAE 60
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K++ + EW FIGSLQS K +V+ I ++ R L+ E+ K++
Sbjct: 61 LLRKQELMKGNPEW----HFIGSLQSRKAKSVVNSVSYIHSLDRLS----LAKEIEKRAE 112
Query: 119 -FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
+ ++QVNT E K G+ + F+ + V GLM + P + + F
Sbjct: 113 GTVRCFVQVNTSLEPSKHGMKKEEVIPFIQELSGFEHILVAGLMTMAPLTDDQDQIRSCF 172
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L E+ + + T+LSMGM+ DFE+AI GAT +RIGS + G
Sbjct: 173 RSLRELRDQVQKLNQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVG 222
>gi|295839436|ref|ZP_06826369.1| YggS family pyridoxal phosphate enzyme [Streptomyces sp. SPB74]
gi|197698751|gb|EDY45684.1| YggS family pyridoxal phosphate enzyme [Streptomyces sp. SPB74]
Length = 244
Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 104/236 (44%), Gaps = 26/236 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R + V+L+AV+K + +R+ S G EN+ QEA
Sbjct: 11 LAANLAKVEERIAKACAAAGRSRGDVTLIAVTKTYPASDVRLLSSLGVEQAGENRDQEAA 70
Query: 63 KKW-----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K +PL W FIG LQ+NK + + +V R + A L ++
Sbjct: 71 PKAAACADLPL--TW----HFIGQLQTNKARSVARYASYVHSVDRARLAEALGAAAAREG 124
Query: 118 RFLPVYIQV------NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AM 167
R L +QV + + G P + + L GLM + P
Sbjct: 125 RELGALVQVALDAEGDPAAHAGRGGAHPEEVPALMDRIAATEGLRPAGLMTVAPLAGRYA 184
Query: 168 GNPKPHFYLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
G+P+ F L+E+A + T +S GM+ D E AIA+GAT VRIGS I G R
Sbjct: 185 GDPRAAFTRLAELASLVRATHPAATMVSAGMSGDLEAAIAAGATHVRIGSAILGTR 240
>gi|329117481|ref|ZP_08246198.1| pyridoxal phosphate enzyme, YggS family [Streptococcus parauberis
NCFD 2020]
gi|326907886|gb|EGE54800.1| pyridoxal phosphate enzyme, YggS family [Streptococcus parauberis
NCFD 2020]
Length = 223
Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 113/226 (50%), Gaps = 24/226 (10%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N+ QV K + +AI A R + ++++AV+K VD+ + G AEN++ + K
Sbjct: 6 NRDQVLKD-VGTAAIEAHRNPEDINVIAVTKYVDAGIAGALMETGLTHIAENRVDKFLDK 64
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSL---FDVIETVSREKTASLLSLEMIKQSRF-L 120
+ L+ + D+ IGSLQ KV +++L F +++VS L+ E+ K+++ +
Sbjct: 65 YESLKNK-DLTWHLIGSLQRRKVKSVINLVDYFHALDSVS-------LAEEIQKRAKHPI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---------- 170
++QVN E K G ++ + Q Q+ + GLM + P +
Sbjct: 117 KCFLQVNISEEESKHGFTISELPQVIEELAQLNQIQLVGLMTMAPLGASEGTIRDIFKKA 176
Query: 171 -KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
K L SE + T+LSMGM+ D+++AI GAT VRIGS F
Sbjct: 177 NKLRLKLESENRKNMPFTELSMGMSGDYKIAIQEGATFVRIGSSFF 222
>gi|302346534|ref|YP_003814832.1| pyridoxal phosphate enzyme, YggS family [Prevotella melaninogenica
ATCC 25845]
gi|302150942|gb|ADK97203.1| pyridoxal phosphate enzyme, YggS family [Prevotella melaninogenica
ATCC 25845]
Length = 223
Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 106/214 (49%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+L P D V LVA+SK ++ + VA GQ IF E+++QE +K L K D++ F
Sbjct: 11 VLGNLP-DGVKLVAISKFHPNEYLEVAYREGQRIFGESQVQELSRKVETLPK--DIEWHF 67
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NKV I ++E V K ++ + K +R + V ++++ E K G
Sbjct: 68 IGHLQTNKVKYIAPYISIVEAVDSLKLLKEINKQAAKFNRIINVLLELHIAEEETKYGFT 127
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNP---KPHFYLLSEIARECK-------- 185
P+ ++ + K NV GLM + + + K L +++ E K
Sbjct: 128 PDACRELLEGGEWKELKNVHISGLMMMASNVDDRNQIKKEMMLAADLFDELKAKYFADDP 187
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ S GM+ D+++A+ +T VR+G+ IFG R
Sbjct: 188 EFKERSWGMSHDYDIAVECRSTMVRVGTTIFGPR 221
>gi|325694120|gb|EGD36038.1| cell division protein YlmE [Streptococcus sanguinis SK150]
Length = 223
Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 21/229 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
K+ L+ E ++ IGSLQ KV ++++ D + K A E+ K++
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAK----EIDKRAEHV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPH---F 174
+ ++QVN E K G + + + V+L + NV+ GLM + P + + F
Sbjct: 116 IKCFLQVNISKEESKHGFLIEELE--VVLPELEKLENVQIVGLMTMAPFEASDEELNQIF 173
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 174 EKAHQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|163784800|ref|ZP_02179590.1| hypothetical protein HG1285_05093 [Hydrogenivirga sp. 128-5-R1-1]
gi|159879927|gb|EDP73641.1| hypothetical protein HG1285_05093 [Hydrogenivirga sp. 128-5-R1-1]
Length = 181
Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 3/163 (1%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
E SA + R + V ++ SK +K+ A G F EN++QE K L++ D+
Sbjct: 15 EKSAKKSGRKLEDVIILGASKTQPVEKLIEAYKAGLRYFGENRVQEGIDKIEKLKEYKDI 74
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
IG LQ+NK V F++I ++ R+ A L K + V I+VN G E K
Sbjct: 75 HWHLIGGLQTNKAKYAVKYFEMIHSLDRKPLADELDKRAKKIGKKQDVLIEVNIGGEESK 134
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHF 174
G+ P K+ QK LN+ GLMCIPP N +P+F
Sbjct: 135 YGVQPENLKELFEYSMQKENLNILGLMCIPPYSENKEDSRPYF 177
>gi|67479513|ref|XP_655138.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56472254|gb|EAL49752.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
Length = 229
Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 11/209 (5%)
Query: 20 LAKRPKDSVSLVAVSKMVDSKKIRVALSC-GQVIFAENKLQEAKKKWIPLRKEW-DVQLR 77
LA + + V L+AVSK + I+ + +F EN +QE +K L + D++
Sbjct: 16 LASQREKPVCLIAVSKTKPKEAIQHLYNVYNHRVFGENYIQELHEKATELEEVCPDIEWH 75
Query: 78 FIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKS 135
FIG LQSNK+ +VS ++TV + A L+ I ++ + V +Q+N+ E QK
Sbjct: 76 FIGRLQSNKLKLLVSTPHLKCVQTVHSIEIAEKLNKACINANKTIDVMVQINSSGEEQKG 135
Query: 136 GIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE-CKLTKL----- 189
G+ + V + L+ G+M I +G+ K +F + ++A C L
Sbjct: 136 GVSVEEAISVVKEVMKCSNLHFIGIMTIG-MVGDSKKNFTTMKQLADTICSQEHLGSIEI 194
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMGM+ D+E AI GAT VR+G+ +FG R
Sbjct: 195 SMGMSSDYEQAIELGATMVRVGTALFGAR 223
>gi|198282580|ref|YP_002218901.1| alanine racemase domain-containing protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218665726|ref|YP_002424770.1| conserved hypothetical protein TIGR00044 [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198247101|gb|ACH82694.1| alanine racemase domain protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218517939|gb|ACK78525.1| conserved hypothetical protein TIGR00044 [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 222
Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 93/205 (45%), Gaps = 25/205 (12%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
L+A SK V + +R A + G F EN LQEA K LR + FIG +Q NK +
Sbjct: 22 LLAASKHVTAATLRDAYALGLRHFGENFLQEALDKQTALRDLDGIIWHFIGRIQRNKTAL 81
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRF----LPVYIQVNTGYEIQKSGIMPNQTKDF 145
+ FD +E+V R A E + +R L V I+V E K G P +
Sbjct: 82 LARHFDWVESVDRPLIA-----ERLHAARAGMEPLNVLIEVAISGEETKGGCAPEDVPEL 136
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPH------------FYLLSEIARECKLTKLSMGM 193
++ + L + GLM A+ +P+P F L + L LSMG
Sbjct: 137 ALVISRLSHLRLRGLM----ALVHPQPELAEADFRRMAELFLALRQTQVHADLDTLSMGT 192
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D+ A+ GAT +R+G+ +FG R
Sbjct: 193 SADYLQALQQGATEIRLGTILFGAR 217
>gi|125717512|ref|YP_001034645.1| pyridoxal 5'-phosphate dependent enzymes class III [Streptococcus
sanguinis SK36]
gi|125497429|gb|ABN44095.1| PyridoxaL 5'-phosphate Dependent Enzymes class III, putative
[Streptococcus sanguinis SK36]
gi|324993405|gb|EGC25325.1| cell division protein YlmE [Streptococcus sanguinis SK405]
gi|324995283|gb|EGC27195.1| cell division protein YlmE [Streptococcus sanguinis SK678]
gi|327461679|gb|EGF08010.1| cell division protein YlmE [Streptococcus sanguinis SK1]
gi|327489532|gb|EGF21325.1| cell division protein YlmE [Streptococcus sanguinis SK1058]
gi|332366084|gb|EGJ43840.1| cell division protein YlmE [Streptococcus sanguinis SK1059]
Length = 223
Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 19/228 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ E ++ IGSLQ KV ++++ D + K A + + +
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDK---RAEHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPH---FY 175
++QVN E K G + + + V+L + NV+ GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFLIEELE--VVLPELEKLENVQIVGLMTMAPFEASHEELNQIFE 174
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 175 KAHQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|94469206|gb|ABF18452.1| proline synthetase co-transcribed protein-like protein [Aedes
aegypti]
Length = 258
Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 103/213 (48%), Gaps = 24/213 (11%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQE-AKKKWIP--LRKEWDVQLRFIGSLQSNK 86
LVAVSK + I S GQ F EN +QE +K P L D++ FIG LQ+NK
Sbjct: 40 LVAVSKTKPIELILDGYSIGQRDFGENYVQELIEKANDPRILEHCKDIRWHFIGHLQTNK 99
Query: 87 VSEIVSL--FDVIETVSREKTASLLSLEMIK------QSRFLPVYIQVNTGYEIQKSGIM 138
+++IV+L +I+TV K A L+ K + + L V IQ+NT E +K+G
Sbjct: 100 INKIVNLPNLHMIQTVHNAKLAEGLNKAWEKTKAEKPEKQHLNVLIQINTSGEDEKNGTQ 159
Query: 139 PNQTKDFVILCRQKY-QLNVEGLMCI----PPAMGNPKPHFYLL--------SEIARECK 185
P + + +K L G+M I P P F L S R+
Sbjct: 160 PAEAVNLYRFVTEKCPNLKCHGVMTIGRFGHDYSTGPNPDFIELMKCHQDICSTFERDPA 219
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++SMGM+ DF AI G+T VR+GS IFG R
Sbjct: 220 ELQVSMGMSDDFVQAIEMGSTIVRVGSSIFGAR 252
>gi|116071131|ref|ZP_01468400.1| hypothetical protein BL107_15835 [Synechococcus sp. BL107]
gi|116066536|gb|EAU72293.1| hypothetical protein BL107_15835 [Synechococcus sp. BL107]
Length = 220
Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 100/193 (51%), Gaps = 6/193 (3%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
L+AVSK + IR S GQ F E++LQEA +K L + +Q FIG LQ NKV
Sbjct: 22 LLAVSKGHPAASIRAVASLGQQAFGESRLQEAVEK-QALLSDLKLQWHFIGRLQRNKVRG 80
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVIL 148
+V F VI +V A +S +++ V +QV + K G+ P++ + L
Sbjct: 81 VVKAFSVIHSVDSLALAERVSRIAVEEGCCPDVLLQVKFREDPTKGGMEPSELLSAWPQL 140
Query: 149 CRQKYQLNVEGLMCIPPAM--GNPKPHFYL-LSEIARECKLTKLSMGMTRDFELAIASGA 205
C L + GLM + P G + ++ +A + L SMGM+ D+ A+A+G+
Sbjct: 141 CALP-SLRLMGLMTMAPLGLEGEERQSLFVECRSLADQLGLPDCSMGMSGDWTEAVAAGS 199
Query: 206 TSVRIGSGIFGER 218
T +R+GS +FG+R
Sbjct: 200 TWLRLGSAVFGQR 212
>gi|149177443|ref|ZP_01856047.1| hypothetical protein PM8797T_19116 [Planctomyces maris DSM 8797]
gi|148843776|gb|EDL58135.1| hypothetical protein PM8797T_19116 [Planctomyces maris DSM 8797]
Length = 236
Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 111/228 (48%), Gaps = 21/228 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I+ + I A+R +SV+L+ V+K + + G AE++ Q+
Sbjct: 8 LHKNLTGIQNRIQAACIRAQRAPESVTLIGVTKYARLEWASELIKLGCRDLAESRTQQLA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK---TASLLSLEMIKQSRF 119
++ L D+ FIG LQ NKV + +I +V EK T ++ E + R
Sbjct: 68 ERAGLLPS--DLHWHFIGPLQRNKVRRTIQYSWLIHSVDSEKLLKTIDRVAGESKQNPRI 125
Query: 120 LPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
L I+VN E K G + + + LCR + + GLM + P + +P +P F
Sbjct: 126 L---IEVNLSGEANKKGFQKTELLRLWPSLCRTSHA-QISGLMTMAPHVDDPELARPVFR 181
Query: 176 LLSEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
LSE+ + +L +LSMGM+ DFE+ I GAT VR+GS +F
Sbjct: 182 ELSELRDSLQAISPEQIRLQELSMGMSGDFEVGIEEGATLVRVGSALF 229
>gi|323352737|ref|ZP_08087707.1| cell division protein YlmE [Streptococcus sanguinis VMC66]
gi|322121773|gb|EFX93519.1| cell division protein YlmE [Streptococcus sanguinis VMC66]
Length = 223
Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 21/229 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K +D + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYIDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
K+ L+ E ++ IGSLQ KV ++++ D + K A E+ K++
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAK----EIDKRAEHV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKP---HF 174
+ ++QVN E K G + + + V+L + NV+ GLM + P + + F
Sbjct: 116 IKCFLQVNISKEESKHGFLIEELE--VVLPELEKLDNVQIVGLMTMAPFEASHEELNQMF 173
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 174 EKAHQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|313632496|gb|EFR99508.1| pyridoxal phosphate enzyme, YggS family [Listeria seeligeri FSL
N1-067]
Length = 229
Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 112/229 (48%), Gaps = 15/229 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ L+ ++IE + + R K V+LVAV+K +D+ ++ G F EN+
Sbjct: 1 MTKQANLEKVTKQIELACTESNRDKTDVTLVAVTKTIDATEMTELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L + D+ +IGSLQ+ KV +++ D + ++ R ASL + ++ +
Sbjct: 61 FLEKTTQLANKDDICWHYIGSLQTRKVKDVLPKIDYLHSLDR---ASLAKEIEKRATKPV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-KPH--FYLL 177
++QVN E K G + F+ KY + + GLM + P + + H F+ L
Sbjct: 118 KCFLQVNISGEETKHGFSKEEALSFLQEADFKY-IEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ +E T+LSMGMT DF +AI GAT +R+G + +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDFGIAITEGATFIRVGRALVSDE 225
>gi|50304253|ref|XP_452076.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641208|emb|CAH02469.1| KLLA0B12265p [Kluyveromyces lactis]
Length = 258
Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 107/216 (49%), Gaps = 25/216 (11%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQS 84
+V L+AVSK + I++ G F EN +QE K + +P D++ FIG LQS
Sbjct: 48 NVELLAVSKYKPAADIKILYDYGVRHFGENYVQEMITKSEILPQ----DIKWHFIGGLQS 103
Query: 85 NK---VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY---IQVNTGYEIQKSGIM 138
NK +++I +L+ V ETV K A L K + PV +Q+NT E QKSG+
Sbjct: 104 NKCKDLAKIANLYSV-ETVDSLKKAKKLEEARGKWNPDAPVITCNVQINTSGEEQKSGLF 162
Query: 139 PNQTKDFVI--LCRQKYQLNVEGLMCIPP----AMGNPKPH-FYLLSEIARECKLT---- 187
++ L ++ +++ GLM + GN + F L E ++
Sbjct: 163 AEVEVYSIVEYLIKEAKHVSLNGLMTVGSWDVSHSGNEENQDFARLVEWKKKLDAKYGLD 222
Query: 188 -KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
KLSMGMT DF AI G + VRIG+ IFG RP +
Sbjct: 223 LKLSMGMTADFRQAIKQGTSEVRIGTAIFGSRPLKN 258
>gi|270263058|ref|ZP_06191328.1| hypothetical protein SOD_d00730 [Serratia odorifera 4Rx13]
gi|270042746|gb|EFA15840.1| hypothetical protein SOD_d00730 [Serratia odorifera 4Rx13]
Length = 235
Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 104/228 (45%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + +I +A R + ++L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDVRSRIATAAQGCARAPEEITLLAVSKTKPVAAIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + + FIG LQSNK + F TV R + A LS +
Sbjct: 63 VDKVQHFATQPEGATLDWHFIGPLQSNKSRLVAEHFAWCHTVDRLRIAQRLSDQRPAGMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQ+N E KSGI+ + L + GLM IP + + +
Sbjct: 123 PLNVLIQINISDEQSKSGIVLAELPALAEAVAALPNLRLRGLMAIPAPEEDYQRQLAVFG 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+++ ++ LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 183 QMSDAFLALQQHYPQVDTLSMGMTDDMAAAIAAGSTLVRIGTAIFGAR 230
>gi|269957163|ref|YP_003326952.1| alanine racemase domain-containing protein [Xylanimonas
cellulosilytica DSM 15894]
gi|269305844|gb|ACZ31394.1| alanine racemase domain protein [Xylanimonas cellulosilytica DSM
15894]
Length = 245
Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 106/242 (43%), Gaps = 28/242 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC-------GQVIFA 54
+ +++ + + +++A A R V ++ +K D+ + A++ G V+
Sbjct: 7 GIASRIAAVRSRADDAARTAGRDPREVRVLLATKTQDAATVLDAVAAAAGTPGWGPVLVG 66
Query: 55 ENKLQEAKKKWIPLRKE---WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
EN++QE K L V++ IG LQSNKV+ ++ +ETV A+ L+
Sbjct: 67 ENRVQELVAKAPALAPLVAAGTVEVHLIGHLQSNKVNPALATSSCVETVDSLAIATALAT 126
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171
+ R L V +QVN E KSG+ P L + G M I +
Sbjct: 127 RCERAGRVLDVMVQVNVSGEESKSGVAPESAVALAGEVAALPGLRLVGFMTI---GARSR 183
Query: 172 PHFYLLSEIAR---------------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ + AR + +LSMGMT D E AIA GAT VR+G+GIFG
Sbjct: 184 DDAVVRAGYARLRAIRDAVVGSGAPGTAEARELSMGMTDDLEAAIAEGATIVRVGTGIFG 243
Query: 217 ER 218
R
Sbjct: 244 PR 245
>gi|126304071|ref|XP_001381845.1| PREDICTED: similar to proline synthetase co-transcribed homolog
(bacterial), [Monodelphis domestica]
Length = 394
Score = 85.1 bits (209), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 125/243 (51%), Gaps = 28/243 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L K++++ SA A+R +D LVAVSK + + A + GQ F EN
Sbjct: 130 LGVGLALLAVKERVQQSA--ARRSRDLPAIQPRLVAVSKTKPADMVIEAYAHGQRSFGEN 187
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSL 111
+QE +K L +++ FIG LQ V++++++ ++ +ETV K A ++
Sbjct: 188 YVQELLEKASNTKILSSCPEIKWHFIGHLQKQNVNKLIAVPNLYMLETVDSVKLADKVNN 247
Query: 112 EMIKQ--SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMG 168
K+ S L V +Q+NT E K G+ P++T V K L GLM I + G
Sbjct: 248 SWQKRGSSERLKVMVQINTSGEESKHGLPPSETMATVQHINAKCPNLEFVGLMTIG-SFG 306
Query: 169 N-----PKPHFYLLSEIARE-CK-------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ P P F L + +E C+ +LSMGM+ DF+ AI G+T+VRIGS IF
Sbjct: 307 HDLSKGPNPDFQALLCLRKELCEKLGLPIDQVELSMGMSMDFQHAIEMGSTNVRIGSTIF 366
Query: 216 GER 218
GER
Sbjct: 367 GER 369
>gi|111018096|ref|YP_701068.1| hypothetical protein RHA1_ro01083 [Rhodococcus jostii RHA1]
gi|110817626|gb|ABG92910.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length = 241
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 97/227 (42%), Gaps = 14/227 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +++ + A R VSL+ V+K R+ G F E++ QEA K
Sbjct: 11 LGTVRARLDAACRDAGRDPADVSLLPVTKFFPESDARILYDLGCREFGESREQEATAKIA 70
Query: 67 PLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK------TASLLSLEMIKQS 117
R + V+ IG LQ NK + I +V E+ A+ +LE ++
Sbjct: 71 EFRTVVTDSSVRWHMIGHLQRNKAKAVAHWAYAIHSVDSERLVGALGRAATTALEAGERP 130
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V +QV+ + Q+ G + + L GLM +PP +P F L
Sbjct: 131 EPLRVLLQVSLDGDPQRGGAAIADLERLAAQVQSSPGLEYRGLMAVPPIDADPDAAFEEL 190
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+I + T LS GMT D E A+ G+T VR+G+ + G RP
Sbjct: 191 QKIHARLRRDHPDATDLSAGMTNDLEHAVRHGSTCVRVGTALLGSRP 237
>gi|169827022|ref|YP_001697180.1| hypothetical protein Bsph_1446 [Lysinibacillus sphaericus C3-41]
gi|168991510|gb|ACA39050.1| UPF0001 protein [Lysinibacillus sphaericus C3-41]
Length = 238
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 107/209 (51%), Gaps = 24/209 (11%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R ++V ++AV+K V ++ + A+ G EN+ + +K ++ DV +IGSL
Sbjct: 28 REANNVQIIAVTKEVSVERTQEAIEAGLTHLGENRPEGLNRKISAIQA--DVNWHYIGSL 85
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSL-EMIKQSRFLPV--YIQVNTGYEIQKSGIMP 139
Q+ KV ++++ D + ++ R LSL E I++ PV +IQVN E K G+
Sbjct: 86 QTRKVKQVINSIDFLHSLDR------LSLAEEIEKRAVKPVKCFIQVNVSGEESKHGLSM 139
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK------------LT 187
+ FV R ++ V GLM + P + + ++ ++C+ T
Sbjct: 140 EEVLPFVESLRSFTKVQVVGLMTMAPNTEDEALIRSVFKQL-KQCQQQIAEQGFAHAPCT 198
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+LSMGM+ DFE+A+ GAT VR+G+ + G
Sbjct: 199 ELSMGMSNDFEIAVEEGATFVRVGTALVG 227
>gi|302667847|ref|XP_003025502.1| hypothetical protein TRV_00264 [Trichophyton verrucosum HKI 0517]
gi|291189616|gb|EFE44891.1| hypothetical protein TRV_00264 [Trichophyton verrucosum HKI 0517]
Length = 303
Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 107/235 (45%), Gaps = 51/235 (21%)
Query: 28 VSLVAVSKMVDSKKIRVALS--CGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQ 83
V LVAVSK+ I S + F EN +QE K K +P W FIG LQ
Sbjct: 70 VRLVAVSKLKPVSDILALHSPPTSHLHFGENYMQELLEKSKALPPEIRW----HFIGGLQ 125
Query: 84 SNK----VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF--------------LPVYIQ 125
SNK E+ L+ +E+V EK ASLL +++ F L V++Q
Sbjct: 126 SNKCVTLAREVRGLW-AVESVDTEKKASLLDKGWGERAEFKQKENDANQPLDRRLRVFVQ 184
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCR----QKYQLNVEGLMCI-------PPAMGNPKPHF 174
VNT E KSGI P + + LCR +L ++GLM I N F
Sbjct: 185 VNTSGEENKSGIQPGEPT--LELCRFIRENCPRLKLQGLMTIGAIARSKATTPENENEDF 242
Query: 175 YLLSEIARECKLTKLS----------MGMTRDFELAIASGATSVRIGSGIFGERP 219
L + R+ + KLS MGM+ DFE AIA G+ VR+GS IFG RP
Sbjct: 243 ACLRDT-RDMVVEKLSLKGEETLELSMGMSNDFEGAIAMGSNQVRVGSTIFGARP 296
>gi|327398334|ref|YP_004339203.1| hypothetical protein Hipma_0165 [Hippea maritima DSM 10411]
gi|327180963|gb|AEA33144.1| protein of unknown function UPF0001 [Hippea maritima DSM 10411]
Length = 223
Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 17/221 (7%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
E + L + + V + A +K + +I + G + +N +++ + + + K+
Sbjct: 5 ERTEALLREIPEGVIVEAAAKTRTADEILQVIDAGITVIGQNYIKDLRAVYDKIGKK--A 62
Query: 75 QLRFIGSLQSNK----VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
+ FIGS+++ K ++ + + ++IET+ + A LS + S+ +P+ I++N+
Sbjct: 63 KWHFIGSVKNQKNELFRTKYLKIINMIETIDSFEDAERLSKKCEAISKVMPILIEINSAE 122
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECK-- 185
E QKSG+MP+ + + + VEGLM + A P+ +F L +I E K
Sbjct: 123 EPQKSGVMPDDAINLIKHISLLKNIRVEGLMTMGKATEEPEDARIYFKLTKQIFDEVKRL 182
Query: 186 ------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGMT +++AI GA VRIG+ IFG R
Sbjct: 183 GIDNVEMKYLSMGMTDTYKIAIQEGANIVRIGTAIFGPRKA 223
>gi|332361767|gb|EGJ39571.1| cell division protein YlmE [Streptococcus sanguinis SK1056]
Length = 223
Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 118/229 (51%), Gaps = 21/229 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
K+ L+ E ++ IGSLQ KV ++++ D + K A E+ K+++
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAK----EIDKRAQHV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPH---F 174
+ ++QVN E K G + + + V+L + NV+ GLM + P + + F
Sbjct: 116 IKCFLQVNISKEESKHGFLIEELE--VVLPELEKLENVQIVGLMTMAPFEASHEELNQIF 173
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 174 EKAHQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAYGSTYVRIGTAFF 222
>gi|325954051|ref|YP_004237711.1| hypothetical protein Weevi_0414 [Weeksella virosa DSM 16922]
gi|323436669|gb|ADX67133.1| protein of unknown function UPF0001 [Weeksella virosa DSM 16922]
Length = 213
Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 106/216 (49%), Gaps = 23/216 (10%)
Query: 16 NSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQ 75
N + K ++V+LVAVSK ++I A S GQ +F ENK+QE +K L K D++
Sbjct: 6 NLQTIKKTLPENVTLVAVSKTHSIEEILEAYSAGQRVFGENKVQELTQKQELLPK--DIE 63
Query: 76 LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKS 135
IG LQ NKV + +I V + ++ + K +R + V +Q E K
Sbjct: 64 WHMIGHLQRNKVKYLAPFVSLIHGVDSLRLLVEINKQAQKNNRIIKVLLQKYIAEEESKF 123
Query: 136 GIMPNQTKDFVILCRQKYQL-NVE--GLMCIPPAMGNPKPHFYLLSEIARECK------- 185
G+ + ++ IL +L NVE GLM M + + ++ E R K
Sbjct: 124 GMDAEEIEE--ILSNHAQELSNVEIVGLM----GMASFTDQYEIVREEFRTLKKTFDRLS 177
Query: 186 -----LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
LT LSMGM+ D+ +AI G+T VRIGS IFG
Sbjct: 178 KNYPKLTILSMGMSGDYPIAIEEGSTMVRIGSAIFG 213
>gi|327441146|dbj|BAK17511.1| predicted enzyme with a TIM-barrel fold [Solibacillus silvestris
StLB046]
Length = 222
Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 24/223 (10%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+++++ KQ++ + +V ++AV+K VD + A+ G + EN+ + K
Sbjct: 13 HQIEIAKQRV--------NAQQTVEIIAVTKEVDVNRTEEAIEAGLIHLGENRPEGLLNK 64
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ V +IGSLQ+ KV +++ D + ++ R A + K+ + ++
Sbjct: 65 LDSINSA--VSWHYIGSLQTRKVKQVIDQIDYLHSLDRLSLAEEIEKRATKR---VKCFV 119
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA 181
QVN E K G+ Q DFV Q ++ V GLM + P + + F L ++
Sbjct: 120 QVNVSGEESKHGLTREQALDFVKQLEQFPKIEVVGLMTMAPFTEDETMIRQVFKQLKQLQ 179
Query: 182 RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+E T+LSMGM+ D+E+A+ GAT VRIG+ + G
Sbjct: 180 QEVSQLNIPNVPCTELSMGMSNDYEIAVEEGATFVRIGTALVG 222
>gi|110639046|ref|YP_679255.1| hypothetical protein CHU_2661 [Cytophaga hutchinsonii ATCC 33406]
gi|110281727|gb|ABG59913.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406]
Length = 220
Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 98/206 (47%), Gaps = 16/206 (7%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+ +L+AV+K + ++ A S G IF ENK+QE K L K D+Q IG LQSNK
Sbjct: 17 NTTLIAVTKTHPVEVLQQAYSSGLRIFGENKVQELISKAEVLPK--DIQWHLIGHLQSNK 74
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V I +I +V K ++ E K R + +QV E K G+ + + +
Sbjct: 75 VKYIAPFIYMIHSVDSFKLLQEINKEAKKNKRVIACLLQVYIANEDTKFGLDTQELTNLL 134
Query: 147 IL--CRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLT---------KLSMG 192
+ Q + ++GLM + + + F L + + T ++SMG
Sbjct: 135 LHPELEQLENIQIQGLMGMATNTNDQEQVRKEFRYLKNLFKSLAETIEKKNVAWKEISMG 194
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
MT D+ LA+ G+T VRIGS IFG R
Sbjct: 195 MTSDYRLAVEEGSTMVRIGSAIFGNR 220
>gi|126654877|ref|ZP_01726411.1| hypothetical protein CY0110_10587 [Cyanothece sp. CCY0110]
gi|126623612|gb|EAZ94316.1| hypothetical protein CY0110_10587 [Cyanothece sp. CCY0110]
Length = 218
Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 106/210 (50%), Gaps = 12/210 (5%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
IL + P SV LVAV+K I A + G FAE+++QEA +K L+ D+ F
Sbjct: 10 ILGQIP-SSVRLVAVTKKKSVAAIEEAYNYGIRDFAESRVQEALEKQEQLQNYQDICWHF 68
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG +Q+NK +++ F I +V K A L K S V +QV ++ K G
Sbjct: 69 IGHIQTNKAKQVLKNFHWIHSVDSLKLAKYLDKLADKNSISPHVCLQVKILHDPNKYGWK 128
Query: 139 PNQT-KDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARE------CKLTK 188
+ +D L KY + ++GLM I P + F E+A + +L +
Sbjct: 129 VEEIWQDLSKLESLKY-IKIDGLMTILPLGLSQNECLDTFAKTKELASKITEKSSLQLKE 187
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D+ LA+ GAT +R+G+ IFGER
Sbjct: 188 LSMGMSNDYLLAVEKGATMIRLGTIIFGER 217
>gi|145507578|ref|XP_001439744.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406939|emb|CAK72347.1| unnamed protein product [Paramecium tetraurelia]
Length = 226
Score = 84.7 bits (208), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 108/201 (53%), Gaps = 15/201 (7%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V+LVAVSK + I+ A GQ F EN + E +K PL D+ FIG LQ+NKV
Sbjct: 27 VTLVAVSKTKPVELIKEAYEGGQKHFGENYVNELIEKA-PLLPN-DISWHFIGHLQTNKV 84
Query: 88 SEIVSL--FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
S I+ + + I++V K A + K R + +++Q+ E K+G ++ K
Sbjct: 85 STIMKIQNLEFIQSVDSLKLAQKIEKHCEKLGRNINIFVQIKLSEEESKTGAEIDEAKLI 144
Query: 146 V--ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR----ECKLT--KLSMGMTRDF 197
+ I+ + K+ + + GLM I P +GN K F L ++A+ E L LSMGM+ D+
Sbjct: 145 IQEIITKFKF-IKLIGLMTIGP-IGN-KEIFQQLVDLAKKFENEFNLQPLNLSMGMSGDY 201
Query: 198 ELAIASGATSVRIGSGIFGER 218
AI GA VR+GS IFGER
Sbjct: 202 LDAIKYGADYVRVGSAIFGER 222
>gi|325846632|ref|ZP_08169547.1| pyridoxal phosphate enzyme, YggS family [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325481390|gb|EGC84431.1| pyridoxal phosphate enzyme, YggS family [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 224
Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 103/218 (47%), Gaps = 18/218 (8%)
Query: 15 ENSAILAKRPKD-SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKE 71
+N L K KD L+AV+K KI + G F ENK+QE KK +P
Sbjct: 5 DNIDDLKKDMKDYDAMLLAVTKTHGVDKIMEVYNYGLRDFGENKVQELLDKKDELP---- 60
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
D+ IG LQ+NKV++IV +I +V K ++ K S +Q+N E
Sbjct: 61 DDINWHLIGHLQTNKVNKIVGEIRLIHSVDSLKILKKINNRAKKLSIVQDCLLQINISKE 120
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP----------KPHFYLLSEIA 181
KSG +D + ++ + + GLM + P + K F LS ++
Sbjct: 121 ESKSGFYEEDIEDIINQAKELENVKIRGLMTMAPNTEDVSVIRSCFKGLKKIFDNLSNLS 180
Query: 182 -RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGMT D+++A+ GA +R+GS IFG+R
Sbjct: 181 YNNIEMEYLSMGMTHDYKIALEEGANIIRVGSKIFGKR 218
>gi|315639615|ref|ZP_07894755.1| cell division protein YlmE [Enterococcus italicus DSM 15952]
gi|315484576|gb|EFU75032.1| cell division protein YlmE [Enterococcus italicus DSM 15952]
Length = 223
Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 115/228 (50%), Gaps = 19/228 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-- 60
+ L+ +Q+++ + LA R ++SV+LVAV+K VD + ++ G AEN+++
Sbjct: 2 ISENLRKVEQEVQKACALASRQRESVTLVAVTKTVDLETTIEVVTNGVTDCAENRVEPFL 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
AKK+ + K+ +V FIG+LQ KV +++ D + A+ + K+ R
Sbjct: 62 AKKEAM---KDLNVTWHFIGNLQRRKVKHVINEVDYFHALESLSLANEIQKRATKKIR-- 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
+I+VN E K GI P++ FV + ++ + GLM + P F L
Sbjct: 117 -CFIEVNVSGEESKQGIKPSELSSFVEQLSEFDKVEIVGLMTMAPFQSTKSEQRDVFLQL 175
Query: 178 SEIAREC---KLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ + +LT +LSMGM+ D+ +AI GAT +R+G+ + E
Sbjct: 176 RNLQKSIEAQQLTYAPCHELSMGMSNDYTVAIEEGATFIRVGTALVKE 223
>gi|16332078|ref|NP_442806.1| hypothetical protein slr0556 [Synechocystis sp. PCC 6803]
gi|1723173|sp|P52056|Y556_SYNY3 RecName: Full=UPF0001 protein slr0556
gi|1001387|dbj|BAA10877.1| slr0556 [Synechocystis sp. PCC 6803]
Length = 218
Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 103/211 (48%), Gaps = 10/211 (4%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL 76
S I+A P SV LVAV+K I A G FAE+++QEA K L D+
Sbjct: 8 SEIIATLPP-SVRLVAVTKTKAIADIEAAYGAGIRDFAESRIQEALPKIEALANYQDINW 66
Query: 77 RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG 136
FIG LQSNK ++V F I +V A L + ++F +Q+ + KSG
Sbjct: 67 HFIGRLQSNKARKVVENFTYIHSVDNLAIAVKLDRIAEELNKFPQGLLQIKLLPDENKSG 126
Query: 137 IMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIA------RECKLT 187
+ K + L + GLM I P + G+ + F L +A LT
Sbjct: 127 WTREELKLDLPQLELLKNLKICGLMTILPLGLSPGDRQLTFGELKNLATAINQQSSLSLT 186
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ AIA+GAT +R+G+ +FG+R
Sbjct: 187 ELSMGMSGDYPEAIAAGATMIRLGTILFGDR 217
>gi|70982173|ref|XP_746615.1| alanine racemase family protein [Aspergillus fumigatus Af293]
gi|66844238|gb|EAL84577.1| alanine racemase family protein, putative [Aspergillus fumigatus
Af293]
gi|159122150|gb|EDP47272.1| alanine racemase family protein, putative [Aspergillus fumigatus
A1163]
Length = 286
Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 119/255 (46%), Gaps = 46/255 (18%)
Query: 7 LQVFKQKIENSAILAKRPKD-SVSLVAVSKMVDSKKIRVALS---CGQVIFAENKLQE-- 60
L +I +A+ A RP + L+AVSK+ + I +AL + F EN LQE
Sbjct: 34 LSSVTSRISTAALNANRPATKPIRLIAVSKLKPAADI-LALHNPPTNHLHFGENYLQELL 92
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K K +P W FIG LQSNK ++ V +E+V EK ASLL ++S
Sbjct: 93 EKSKLLPPSIRW----HFIGGLQSNKCVTLARDVRGLWAVESVDSEKKASLLDRGWGERS 148
Query: 118 R---------FLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQK-YQLNVEGLMCI--- 163
L V++QVNT E K+G+ P R+K +L ++G+M I
Sbjct: 149 EEVRGVALEDRLRVFVQVNTSGEENKAGVDPVAGAVPLARFIREKCPRLKLQGVMTIGAI 208
Query: 164 ------PPAMGNPKPHFYLLSE----IARECKLT------KLSMGMTRDFELAIASGATS 207
P N F L E I RE L +LSMGM+ DFE AI G+
Sbjct: 209 ARSKATTPETENED--FVCLRETRDRIVRELGLQGDDAELELSMGMSEDFEGAIKLGSDE 266
Query: 208 VRIGSGIFGERPCQT 222
VR+G+ IFGERP ++
Sbjct: 267 VRVGTTIFGERPPKS 281
>gi|332362880|gb|EGJ40673.1| cell division protein YlmE [Streptococcus sanguinis SK49]
Length = 223
Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 21/229 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
K+ L+ E ++ IGSLQ KV ++++ D + K A E+ K++
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAK----EIDKRAEHV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPH---F 174
+ ++QVN E K G + + V+L + NV+ GLM + P + + F
Sbjct: 116 IKCFLQVNISKEESKHGFLVEDLE--VVLPELEKLENVQIVGLMTMAPFEASHEELNQIF 173
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 174 EKAHQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|312863618|ref|ZP_07723856.1| pyridoxal phosphate enzyme, YggS family [Streptococcus vestibularis
F0396]
gi|322517033|ref|ZP_08069921.1| cell division protein YlmE [Streptococcus vestibularis ATCC 49124]
gi|311101154|gb|EFQ59359.1| pyridoxal phosphate enzyme, YggS family [Streptococcus vestibularis
F0396]
gi|322124401|gb|EFX95901.1| cell division protein YlmE [Streptococcus vestibularis ATCC 49124]
Length = 228
Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 99/208 (47%), Gaps = 15/208 (7%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R + V+++AV+K V S+ + G AEN++ + K+ L+K +D+ IG
Sbjct: 22 ANRSSEEVNIIAVTKYVSSEIAEELVETGIKHIAENRVDKFLDKYQALKK-YDLTWHLIG 80
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
SLQ KV ++++L D + K A + + + ++QVN E K G P
Sbjct: 81 SLQRRKVKDVINLVDYFHALDSVKLAEEIQK---RADHTINCFLQVNVSGEESKHGFPPE 137
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA-----------RECKLTKL 189
+ + ++ + GLM + P N + + +E + +L
Sbjct: 138 ELDTVLNHIENLDKICIVGLMTMAPIDANAQELDKIFAETNELRQSIQDKKIKNVPCDQL 197
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGE 217
SMGM+RD+++AI +G+T VRIGS F E
Sbjct: 198 SMGMSRDYDMAIQNGSTFVRIGSAFFKE 225
>gi|258649210|ref|ZP_05736679.1| pyridoxal phosphate enzyme, YggS family [Prevotella tannerae ATCC
51259]
gi|260850475|gb|EEX70344.1| pyridoxal phosphate enzyme, YggS family [Prevotella tannerae ATCC
51259]
Length = 223
Score = 84.7 bits (208), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 92/205 (44%), Gaps = 16/205 (7%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V LVAVSK +IR GQ F E+ QE + K L K D+ FIG LQ+NKV
Sbjct: 19 VDLVAVSKFHPIAEIRDCYELGQRCFGESHEQELRIKQEELPK--DIAWHFIGHLQANKV 76
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
I +IE V + ++ K +R + ++V+ E K G P + +
Sbjct: 77 KYIAPYIFMIEAVDTFRLLKEINKHAAKHNRIIDCLLEVHIAQEETKYGFTPEACRQLLA 136
Query: 148 LCRQKY--QLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLTKLS---------MGM 193
K + + GLMC+ + + F L ++ E K T S GM
Sbjct: 137 DGEWKALKHIRLRGLMCMATNTDDTSQIRREFQLALQLFEELKSTYFSDKDYFNVKSWGM 196
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
T D++LAI G+ +R+G+ IFG R
Sbjct: 197 THDYKLAIEEGSNHIRVGTAIFGPR 221
>gi|23465017|ref|NP_695620.1| hypothetical protein BL0419 [Bifidobacterium longum NCC2705]
gi|23325620|gb|AAN24256.1| hypothetical protein in upf0001 [Bifidobacterium longum NCC2705]
Length = 294
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 101/244 (41%), Gaps = 36/244 (14%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
+I ++ A R SV L+A +K D +I A+ G + EN+ QE K L K
Sbjct: 49 DRIASAESAAGRAAGSVQLLAATKTRDVGEILAAIDAGIRVIGENRPQEITVKADGLAKR 108
Query: 72 W------------------------DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS 107
+ IG LQ+NK+ +++ + D IE+V + A
Sbjct: 109 LGERGYSLGVIDAAEADTANAAAATHIPFHLIGQLQANKIGKVLPVVDTIESVDSIELAE 168
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM 167
++ + + V ++VN E KSG P+ D L ++GLM I +
Sbjct: 169 KIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQGLMTIGAHV 228
Query: 168 GNPK------PHF------YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + H L S T+LSMGMT D AI G+T VR+G+ IF
Sbjct: 229 DDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMAYAIEEGSTIVRVGTAIF 288
Query: 216 GERP 219
GER
Sbjct: 289 GERA 292
>gi|89101245|ref|ZP_01174068.1| hypothetical protein B14911_01990 [Bacillus sp. NRRL B-14911]
gi|89084038|gb|EAR63216.1| hypothetical protein B14911_01990 [Bacillus sp. NRRL B-14911]
Length = 223
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 111/239 (46%), Gaps = 38/239 (15%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ ++KI+ + + R V+++AV+K V +++ + A+S G EN+
Sbjct: 1 MKVEENLKSIQEKIDEACKRSGRNPGEVTIIAVTKYVSTERAKEAVSAGIGNLGENRDDG 60
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
AK + I +W FIGSLQ+ KV I+ + D I ++ R L+ E+ K++
Sbjct: 61 MLAKHEEIGHAAKW----HFIGSLQTRKVKNIIGIADYIHSLDRLS----LAKEIDKRAE 112
Query: 119 -FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
+ IQVN E K G+ P + FV ++ GLM + P +
Sbjct: 113 ETVQCLIQVNASGEESKQGLSPEEVIPFVKDLEAYPYISAAGLMTMAPLTDD-------- 164
Query: 178 SEIARECKLT-------------------KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E+ R C T +LSMGM+ DF +A+ GAT VRIG+ + GE
Sbjct: 165 EEVLRHCFRTLKTLQKNIQDLNLAHAPCRELSMGMSNDFGIAVEEGATMVRIGTALVGE 223
>gi|325697070|gb|EGD38957.1| cell division protein YlmE [Streptococcus sanguinis SK160]
Length = 223
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 113/227 (49%), Gaps = 17/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
K+ L+ E ++ IGSLQ KV ++++ D + K A E+ K++
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAK----EIDKRAEHV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
+ ++QVN E K G + + + + + + GLM + P + + F
Sbjct: 116 IKCFLQVNISKEESKHGFLVEDLEVVLPELEKLENIQIVGLMTMTPFEASHEELNQIFEK 175
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 176 AHQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|194476540|ref|YP_002048719.1| hypothetical protein PCC_0050 [Paulinella chromatophora]
gi|171191547|gb|ACB42509.1| hypothetical protein PCC_0050 [Paulinella chromatophora]
Length = 225
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 96/194 (49%), Gaps = 5/194 (2%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
S L+AVSK K+ GQ+ F E+KLQE K L ++ FIG LQSNK
Sbjct: 28 SSHLLAVSKNYSVDKVHYMAMLGQISFGESKLQEGLLKQKQLLDFPNLDWHFIGRLQSNK 87
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDF 145
+ ++++ F I +VS A L I++ + +Q+ ++ K G + + +
Sbjct: 88 IRKVINNFHTIHSVSSLALAQKLQQSAIEEEYQPQILLQIKLISDVNKVGFSYTELIESW 147
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS---EIARECKLTKLSMGMTRDFELAIA 202
IL K LN+ GLMCI P PK L + E+ + L + SMGM+ D+ A+
Sbjct: 148 HILTLLK-PLNLIGLMCIAPLDLQPKYRRKLFAKCRELVKILGLKECSMGMSNDWREAVI 206
Query: 203 SGATSVRIGSGIFG 216
G+ VRIGS +F
Sbjct: 207 EGSHYVRIGSALFN 220
>gi|332363496|gb|EGJ41278.1| cell division protein YlmE [Streptococcus sanguinis SK355]
Length = 223
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 19/228 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ E + IGSLQ KV ++++ D + K A + + +
Sbjct: 61 FLEKYHALKDE-KLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDK---RAEHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPH---FY 175
++QVN E K G + + + V+L + NV+ GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFLIEELE--VVLPELEKLENVQIVGLMTMAPFEASHEELNQIFE 174
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 175 KAHQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|73662892|ref|YP_301673.1| hypothetical protein SSP1583 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495407|dbj|BAE18728.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 224
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 22/202 (10%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQ--EAKKKWIPLRKEWDVQLRFIGSLQSNK 86
++AV+K V + A + G F EN+L+ + KK +P DV + FIGSLQ+ K
Sbjct: 28 DVIAVTKYVTIDRANDAYNVGIRHFGENRLEGFQQKKAALP----DDVVMHFIGSLQTRK 83
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQVNTGYEIQKSGIMPNQTKDF 145
V ++++ D + R K L+ E+ K++ + ++QVN E K G+ ++ + F
Sbjct: 84 VKDVINEIDYFHALDRLK----LAKEINKRAEHKIKCFVQVNVSGESSKQGVSLSEVETF 139
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKL--------TKLSMGMT 194
+ +Q + + GLM + P + K F LL E K T+LSMGM+
Sbjct: 140 IKELKQYENIEIIGLMTMAPLTDDESYIKRLFQLLKLKRDEIKALNLNYAPCTELSMGMS 199
Query: 195 RDFELAIASGATSVRIGSGIFG 216
DF LA GA+ VRIG+ + G
Sbjct: 200 NDFHLAAEEGASFVRIGTKLVG 221
>gi|329940938|ref|ZP_08290218.1| hypothetical protein SGM_5710 [Streptomyces griseoaurantiacus M045]
gi|329300232|gb|EGG44130.1| hypothetical protein SGM_5710 [Streptomyces griseoaurantiacus M045]
Length = 239
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 102/212 (48%), Gaps = 24/212 (11%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW-----IPLRKEWDVQLRFIG 80
+ V+L+ V+K + +R+ G AEN+ Q+A K +PL W F+G
Sbjct: 31 EEVTLIVVTKTYPASDVRLLAELGVRHVAENRDQDAAPKAAACSDLPL--TW----HFVG 84
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR----FLPVYIQVNTGYEIQKSG 136
LQ+NKV ++ ++++V R + LS E ++ R L V + ++ G
Sbjct: 85 QLQTNKVRSVLGYASLVQSVDRARLVMALSREAVRTGREVGCLLQVALDAGESGRGERGG 144
Query: 137 IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPHFYLLSEIARECKLTK---- 188
+ P+ + L + L ++GLM + P G + F L +++ + T
Sbjct: 145 VGPDGVGELAALVEEAPGLRLDGLMTVAPLTGEYAGRQQAAFERLMDLSTVLRKTHPAAN 204
Query: 189 -LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+S GM+RD E A+A+GAT VR+G+ + G RP
Sbjct: 205 MVSAGMSRDLEEAVAAGATHVRVGTAVLGVRP 236
>gi|108760438|ref|YP_629997.1| hypothetical protein MXAN_1747 [Myxococcus xanthus DK 1622]
gi|108464318|gb|ABF89503.1| conserved hypothetical protein TIGR00044 [Myxococcus xanthus DK
1622]
Length = 212
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 89/189 (47%), Gaps = 11/189 (5%)
Query: 41 KIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETV 100
+IR+A + G ENK+QEA K + D++ IG LQ+NK + + +
Sbjct: 5 RIRMAYAAGCRELGENKVQEALGKAEAMADLTDLRWSVIGHLQTNKAKVVARFASEFQAL 64
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ A L + + R L V +QVNT E K G+ P++ F L V GL
Sbjct: 65 DSLRVAEALDRRLQVEGRALDVLVQVNTSGEASKFGLPPDEVARFFRDLPAFSSLRVRGL 124
Query: 161 MCIPPAMGNP---KPHFYLLSEIARE--------CKLTKLSMGMTRDFELAIASGATSVR 209
M + +P +P F LL E+ + +LSMGM+ DFE A+ GAT VR
Sbjct: 125 MTLALLSADPARVRPCFTLLRELRARLREEAPAGVTMNELSMGMSGDFEWAVEEGATIVR 184
Query: 210 IGSGIFGER 218
+G IFG R
Sbjct: 185 VGQAIFGPR 193
>gi|314936650|ref|ZP_07843997.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus hominis
subsp. hominis C80]
gi|313655269|gb|EFS19014.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus hominis
subsp. hominis C80]
Length = 224
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 105/207 (50%), Gaps = 22/207 (10%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSL 82
K + +++AV+K V + + A G F EN+++ KK+ +P DV + FIGSL
Sbjct: 24 KTAPNVIAVTKYVTIDRAKEAYDAGLRHFGENRVEGFLEKKQALP----KDVTMHFIGSL 79
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
QS KV ++++ D + + R A ++ + + + +IQVN E K GI ++
Sbjct: 80 QSRKVKDVINDIDYLHALDRLSLAKEINK---RATHTISCFIQVNVSGEETKHGIALSEV 136
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR----ECKLTKL--------S 190
DF+ + + + GLM + P + K + + L + R E K KL S
Sbjct: 137 NDFIEQIKAFDNIKIVGLMTMAP-YTDDKDYIHQLFKQLRLKRDEIKNLKLNYAPCEYLS 195
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGE 217
MGM+ D+ +A+ GAT +RIG+ + GE
Sbjct: 196 MGMSNDYTIAVEEGATFIRIGTKLVGE 222
>gi|293376230|ref|ZP_06622473.1| pyridoxal phosphate enzyme, YggS family [Turicibacter sanguinis
PC909]
gi|292645122|gb|EFF63189.1| pyridoxal phosphate enzyme, YggS family [Turicibacter sanguinis
PC909]
Length = 216
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 106/209 (50%), Gaps = 27/209 (12%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFI 79
+R + V +VA +K V+ ++++ CG I EN++ KK + L EW FI
Sbjct: 18 QRDCEKVRIVAATKYVNVEQMKRLYDCGITIMGENRVDALLEKKAQLHLPIEW----HFI 73
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSL-EMIKQSRFLPV--YIQVNTGYEIQKSG 136
G+LQS KV E+++ DV+ ++ R LSL + I++ R P+ IQVN E K G
Sbjct: 74 GTLQSRKVKEVINEIDVLHSLDR------LSLAKEIEKYRDKPLKCLIQVNISGEKTKHG 127
Query: 137 IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA----------RECKL 186
+ ++ F+ ++ V GLM + P N SE+ + C+
Sbjct: 128 LAKDEVVTFIEQLNSFSKIEVIGLMTMAPNTENELTLRRCFSELKQLQLDLEKNYKSCQ- 186
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIF 215
+LSMGM+ D+ +A+ GAT VR+GS +F
Sbjct: 187 -ELSMGMSNDYLIAVEEGATYVRLGSILF 214
>gi|312133424|ref|YP_004000763.1| tim-barrel fold containing enzyme [Bifidobacterium longum subsp.
longum BBMN68]
gi|291517553|emb|CBK71169.1| pyridoxal phosphate enzyme, YggS family [Bifidobacterium longum
subsp. longum F8]
gi|311772653|gb|ADQ02141.1| Hypothetical TIM-Barrel fold containing enzyme [Bifidobacterium
longum subsp. longum BBMN68]
Length = 277
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 101/244 (41%), Gaps = 36/244 (14%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
+I ++ A R SV L+A +K D +I A+ G + EN+ QE K L K
Sbjct: 32 DRIASAESAAGRAAGSVQLLAATKTRDVGEILAAIDAGIRVIGENRPQEITVKADGLAKR 91
Query: 72 W------------------------DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS 107
+ IG LQ+NK+ +++ + D IE+V + A
Sbjct: 92 LGERGYSLGVIDAAEADTANAAAATHIPFHLIGQLQANKIGKVLPVVDTIESVDSIELAE 151
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM 167
++ + + V ++VN E KSG P+ D L ++GLM I +
Sbjct: 152 KIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQGLMTIGAHV 211
Query: 168 GNPK------PHF------YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + H L S T+LSMGMT D AI G+T VR+G+ IF
Sbjct: 212 DDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMAYAIEEGSTIVRVGTAIF 271
Query: 216 GERP 219
GER
Sbjct: 272 GERA 275
>gi|139437185|ref|ZP_01771345.1| Hypothetical protein COLAER_00324 [Collinsella aerofaciens ATCC
25986]
gi|133776832|gb|EBA40652.1| Hypothetical protein COLAER_00324 [Collinsella aerofaciens ATCC
25986]
Length = 267
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 109/217 (50%), Gaps = 26/217 (11%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV-QLRF- 78
A RP D+ SL+AVSK V + A+ G FAEN+ QE +K L + ++ ++RF
Sbjct: 48 AGRPHDAASLIAVSKTVGVDETVAAIQAGYRHFAENRPQELVRKLTGLAEHPELPEVRFD 107
Query: 79 -IGSLQSNKVSEIVSLFDVIETVSREKTASLLSL---------EMIKQSRFLPVYIQVNT 128
IG+LQ+NK++ ++ ++I +V A +S E++ R L I+VN
Sbjct: 108 MIGNLQTNKINAVLGSAELIHSVGSLHLAQAISSRAVRKIEAGELVGPQRVL---IEVNV 164
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIARECK 185
E K G P++ + + + V+GLM + P GN + F L E+ E +
Sbjct: 165 SGEESKRGFSPDEIRAAAGELAELEGICVQGLMTMAP-RGNKDVARRTFAGLRELRDELE 223
Query: 186 -------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L +LS GM+ DFE A+ G+T VR+G +F
Sbjct: 224 AAHPDLNLPELSCGMSEDFESALEEGSTLVRLGRVVF 260
>gi|322688386|ref|YP_004208120.1| hypothetical protein BLIF_0195 [Bifidobacterium longum subsp.
infantis 157F]
gi|320459722|dbj|BAJ70342.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis 157F]
Length = 273
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 101/244 (41%), Gaps = 36/244 (14%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
+I ++ A R SV L+A +K D +I A+ G + EN+ QE K L K
Sbjct: 28 DRIASAESAAGRAAGSVQLLAATKTRDVGEILAAIDAGIRVIGENRPQEITVKADGLAKR 87
Query: 72 W------------------------DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS 107
+ IG LQ+NK+ +++ + D IE+V + A
Sbjct: 88 LGERGYSLGVIDAAEADTANAAAATHIPFHLIGQLQANKIGKVLPVVDTIESVDSIELAE 147
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM 167
++ + + V ++VN E KSG P+ D L ++GLM I +
Sbjct: 148 KIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQGLMTIGAHV 207
Query: 168 GNPK------PHF------YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + H L S T+LSMGMT D AI G+T VR+G+ IF
Sbjct: 208 DDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMTYAIEEGSTIVRVGTAIF 267
Query: 216 GERP 219
GER
Sbjct: 268 GERA 271
>gi|317482742|ref|ZP_07941754.1| alanine racemase domain-containing protein [Bifidobacterium sp.
12_1_47BFAA]
gi|316915777|gb|EFV37187.1| alanine racemase domain-containing protein [Bifidobacterium sp.
12_1_47BFAA]
Length = 273
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 101/244 (41%), Gaps = 36/244 (14%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
+I ++ A R SV L+A +K D +I A+ G + EN+ QE K L K
Sbjct: 28 DRIASAESAAGRAAGSVQLLAATKTRDVGEILAAIDAGIRVIGENRPQEITVKADGLAKR 87
Query: 72 W------------------------DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS 107
+ IG LQ+NK+ +++ + D IE+V + A
Sbjct: 88 LGERGYSLGVIDAAEADTANAAAATHIPFHLIGQLQANKIGKVLPVVDTIESVDSIELAE 147
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM 167
++ + + V ++VN E KSG P+ D L ++GLM I +
Sbjct: 148 KIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQGLMTIGAHV 207
Query: 168 GNPK------PHF------YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + H L S T+LSMGMT D AI G+T VR+G+ IF
Sbjct: 208 DDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMAYAIEEGSTIVRVGTAIF 267
Query: 216 GERP 219
GER
Sbjct: 268 GERA 271
>gi|238878824|gb|EEQ42462.1| hypothetical protein CAWG_00673 [Candida albicans WO-1]
Length = 277
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 110/214 (51%), Gaps = 27/214 (12%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSN 85
V+LVAVSK+ S I S G F EN +QE AK + +P D++ FIG LQS
Sbjct: 63 VNLVAVSKLKPSSDIMALYSIGVRHFGENYVQELIAKSQELP----NDIKWHFIGGLQSG 118
Query: 86 KVSEI---VSLFDVIETVSREKTASLLSLEMIK-QSRFLPVYIQVNTGYEIQKSGIMPNQ 141
K ++ V+ +ET+ K L +K + + V++Q+NT E QKSG Q
Sbjct: 119 KAKDLSKHVANLYAVETIDSLKKCKQLDNTRVKVEGDDINVFLQINTSGEEQKSGFQNLQ 178
Query: 142 ----TKDFVILCRQKYQLNVEGLMCIPP-----AMGNPKPH--FYLLSEIAR--ECKLT- 187
T +F++ K +L GLM I + N K + F L E+ + + K
Sbjct: 179 DIESTVEFLLSSDCK-KLKFLGLMTIGSFNESISNENDKENQDFKKLVEMKQILDSKYNL 237
Query: 188 --KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+LSMGM+ DF+ AI G+TSVR+G+ IFG RP
Sbjct: 238 NLELSMGMSNDFQQAIKQGSTSVRVGTTIFGSRP 271
>gi|154488149|ref|ZP_02029266.1| hypothetical protein BIFADO_01720 [Bifidobacterium adolescentis
L2-32]
gi|154083622|gb|EDN82667.1| hypothetical protein BIFADO_01720 [Bifidobacterium adolescentis
L2-32]
Length = 272
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 101/231 (43%), Gaps = 35/231 (15%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWI------------ 66
A R SV L+A +K D +I VA+ G + EN+ QE AK K +
Sbjct: 41 AGREAGSVRLLAATKTRDIGEIMVAIDAGVRMIGENRPQEVTAKAKGLARRCAERGFSLG 100
Query: 67 -----PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
P + IG LQSNK+ +++ + D IE+V A +S + + +
Sbjct: 101 VAGVAPDAAAEHIPFHLIGQLQSNKIGKVLPVVDTIESVDSIDLAEKISRRAVARGITVG 160
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK------PHFY 175
V ++VN E KSG P + ++GLM I + + H
Sbjct: 161 VLLEVNESGEESKSGCDPAHAIRIAQKIGTLDGIELQGLMTIGAHVHDETVIRRGFSHLR 220
Query: 176 LLSEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ C+ +LSMGMT D ELAIA G+T VR+G+ IFGER
Sbjct: 221 KTRDLILASGEPGTDRCR--ELSMGMTGDMELAIAEGSTIVRVGTAIFGER 269
>gi|218437552|ref|YP_002375881.1| alanine racemase domain protein [Cyanothece sp. PCC 7424]
gi|218170280|gb|ACK69013.1| alanine racemase domain protein [Cyanothece sp. PCC 7424]
Length = 219
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 101/202 (50%), Gaps = 11/202 (5%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V L+AV+K V +R A G F EN+LQEA K L+ D+ FIG LQ+NK
Sbjct: 17 HVRLIAVTKQVSPDIMRQAYQAGIRDFGENRLQEALSKQEHLQDLPDICWHFIGHLQTNK 76
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG-IMPNQTKDF 145
+++ F I +V L ++ S V +QV + K G +P +D
Sbjct: 77 AKKVLDSFQWIHSVDSLSLLQRLEGYSVELSNPPQVCLQVKVLPDPNKYGWTIPELLQDL 136
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARE------CKLTKLSMGMTRD 196
+ Q Q+ ++GLM I P + F ++A+E +L +LSMGM+ D
Sbjct: 137 PRI-EQCTQVKIQGLMTILPWGLDETETLKAFETTRDLAQELNERSQLQLRELSMGMSGD 195
Query: 197 FELAIASGATSVRIGSGIFGER 218
+ LAI +GAT +R+G+ +FGER
Sbjct: 196 YHLAIKAGATMIRLGTILFGER 217
>gi|307719387|ref|YP_003874919.1| pyridoxal 5'-phosphate-dependent enzyme [Spirochaeta thermophila
DSM 6192]
gi|306533112|gb|ADN02646.1| predicted pyridoxal 5'-phosphate-dependent enzyme [Spirochaeta
thermophila DSM 6192]
Length = 230
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 106/223 (47%), Gaps = 23/223 (10%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA--KKKWIPLR 69
++ + A R + V ++AV+K+ + I A G +F EN+LQEA K++ P
Sbjct: 13 DEVRERCVKAGRRPEEVRVMAVTKLHGPEAIADAYRAGIRLFGENRLQEAASKREAFP-- 70
Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
D +L IG LQ NK + V LF I +V R L + LPV ++VN
Sbjct: 71 --PDAELHLIGHLQRNKARKAVELFSCIHSVDRIPLIEALEKAWGDRGGRLPVLVEVNIS 128
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQ----LNVEGLMCIPPAMGNPK---PHFYLLSEIAR 182
E K G +T++ V ++ L G M + P + + F L E+A
Sbjct: 129 GEETKYGF---RTEEEVGQALERLAASPALEPRGFMTMAPYTDDERVIRAVFGGLRELAS 185
Query: 183 ECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L +LSMGM+ D+ +AI G+T +R+G+ +FGER
Sbjct: 186 RMQKAFPSLPLAELSMGMSNDYPIAIEEGSTILRLGTVLFGER 228
>gi|149280232|ref|ZP_01886355.1| hypothetical protein PBAL39_19280 [Pedobacter sp. BAL39]
gi|149229069|gb|EDM34465.1| hypothetical protein PBAL39_19280 [Pedobacter sp. BAL39]
Length = 229
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 116/239 (48%), Gaps = 33/239 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L +K ++++ + V L+AVSK +++ + A GQ +F EN +QE
Sbjct: 1 MSIADNLLKYKSELDS---------EQVQLIAVSKFNEAEAVLEAYEAGQRVFGENIVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L K D++ IG LQ+NKV I +I++V K + + K R +
Sbjct: 52 LVDKQAQLPK--DIEWHLIGHLQTNKVKYIAPFISLIQSVDSLKLLIEIDKQAAKHKRVI 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQ------TKDFVILCRQKYQLNVEGLMCIPPAMGNPK--- 171
+Q+ E K G+ ++ +++F +L + + GLM I + K
Sbjct: 110 DCLLQIYIADEDTKFGLGFDEAVELLRSEEFAVLKN----VRIVGLMGIASNNASEKQTN 165
Query: 172 PHFYLLSEIARECKLT---------KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L + KL+ +LSMGM+ D+++AI +G+T VRIGS IFG+R +
Sbjct: 166 DEFTELKVLFDGIKLSFFRKDDAFKELSMGMSGDYKIAIEAGSTMVRIGSSIFGKRKIK 224
>gi|24379034|ref|NP_720989.1| hypothetical protein SMU.553 [Streptococcus mutans UA159]
gi|290580945|ref|YP_003485337.1| hypothetical protein SmuNN2025_1419 [Streptococcus mutans NN2025]
gi|24376929|gb|AAN58295.1|AE014900_3 conserved hypothetical protein [Streptococcus mutans UA159]
gi|254997844|dbj|BAH88445.1| hypothetical protein [Streptococcus mutans NN2025]
Length = 223
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 24/227 (10%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
NK VF Q++ A + R KD V+++AV+K VDS + G AEN++ +
Sbjct: 5 ANKEHVF-QEVAAYAQKSGRSKDDVTVIAVTKYVDSDTAEKLVEAGVKHIAENRVDKFLD 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K+ L K +D+ IGSLQ KV ++++ D + K A+ + Q + +
Sbjct: 64 KYRAL-KSYDLTWHLIGSLQRRKVKDVINFVDYFHALDSVKLAAEIQKRADHQ---IKCF 119
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--- 180
+QVN E K G ++ + + ++ V GLM + P + + L++I
Sbjct: 120 LQVNISEEASKHGFRLSEVDKALEEIQHFDKIKVIGLMTMAPIDASEQE----LTDIFQK 175
Query: 181 -------ARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIF 215
+E KL LSMGM+ DF +AI +G+T VRIGS F
Sbjct: 176 ANALRKNLKERKLKNMPFDDLSMGMSGDFPIAIRNGSTFVRIGSAFF 222
>gi|4455209|emb|CAB36532.1| putative Proline synthetase associated protein [Arabidopsis
thaliana]
gi|7269539|emb|CAB79541.1| putative Proline synthetase associated protein [Arabidopsis
thaliana]
Length = 262
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 101/228 (44%), Gaps = 34/228 (14%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R + V ++ VSK IR G F EN +QE K L + D++ F+G L
Sbjct: 30 RDAERVRVLPVSKTKPVSLIRQIYDAGHRCFGENYVQEIIDKAPQLPE--DIEWHFVGHL 87
Query: 83 QSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQVNTGYEIQKSGIM 138
QSNK + V ++ V EK A+ L + R L V +QVNT E+ KSGI
Sbjct: 88 QSNKAKTLLTGVPNLAMVHGVDGEKVANHLDRAVSNLGRHPLKVLVQVNTSGEVSKSGIE 147
Query: 139 PNQTKDFVILCRQKY-QLNVEGLMCI--PPAMGNPKPH----------FYLLSEIARECK 185
P+ + + L GLM I P P+ FY+ S + +
Sbjct: 148 PSSVVELARHVKHHCPNLVFSGLMTIGMPDYTSTPENFRVFYYLIGYLFYVFSGYSYKFY 207
Query: 186 LTK---------------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + LSMGM+ DFELAI G+T+VR+GS IFG R
Sbjct: 208 LPRADVCKALGMAEDQFELSMGMSGDFELAIEMGSTNVRVGSTIFGPR 255
>gi|256425243|ref|YP_003125896.1| alanine racemase [Chitinophaga pinensis DSM 2588]
gi|256040151|gb|ACU63695.1| alanine racemase domain protein [Chitinophaga pinensis DSM 2588]
Length = 225
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 101/210 (48%), Gaps = 22/210 (10%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK--WIPLRKEWDVQLRFIGSLQS 84
+ LVAVSK+ + I+ GQ IF EN +QE ++K +P EW FIG LQS
Sbjct: 19 NAKLVAVSKIKPASDIQALYDAGQRIFGENYVQELQEKQPLLPADIEW----HFIGHLQS 74
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV I ++ V K +S + K +R + +QV+ E K G+ + +
Sbjct: 75 NKVKYIAPFVSMVHAVDSLKLLEEISKQAAKHNRMIRCLLQVHIATEETKFGLDEKELLE 134
Query: 145 FVILCRQK----YQLNVEGLMCIP---PAMGNPKPHFYLLSEIARECK---------LTK 188
+ +Q+ + + GLM + M + F L + + K LT+
Sbjct: 135 LLEAYKQQEARFANIRIAGLMGMATNTDDMQQVRNEFRHLHALQQNMKQRFFSDTDALTE 194
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LS+GM+ D+ +A+ G+T VRIGS +FG R
Sbjct: 195 LSVGMSGDYTIALEEGSTMVRIGSMLFGAR 224
>gi|121603196|ref|YP_980525.1| alanine racemase domain-containing protein [Polaromonas
naphthalenivorans CJ2]
gi|120592165|gb|ABM35604.1| alanine racemase domain protein [Polaromonas naphthalenivorans CJ2]
Length = 259
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 108/245 (44%), Gaps = 33/245 (13%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L++ +I + + A R V L+AVSK + + A++ GQ F EN + E
Sbjct: 19 TIAHHLRLVHDRINVACLAAGRDPCGVRLLAVSKTFGADAVADAVAAGQQAFGENYIAEG 78
Query: 62 KKKWIPLRKEWD-------------VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASL 108
+K + LR+ W ++ IG +QSNK + FD +++V R K A
Sbjct: 79 VEKILALRR-WQAEEAARSGVAAAALEWHCIGPIQSNKTRPVAEHFDWVQSVDRLKIAQR 137
Query: 109 LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG 168
LS + L + +QVN KSG+ P + +L + GLM IP
Sbjct: 138 LSEQRPPGLAPLQICLQVNIDGGANKSGLAPEDVLALAEEVARLPRLVLRGLMAIP---- 193
Query: 169 NPKPHFYLLSEIARECK---------------LTKLSMGMTRDFELAIASGATSVRIGSG 213
P F I K + LS+GMT D E AI +G+T VR+G+
Sbjct: 194 EPAIDFVAACAIHASAKAIFDHINAAGVLAVPMDTLSLGMTADLEAAIHAGSTMVRVGTA 253
Query: 214 IFGER 218
IFG R
Sbjct: 254 IFGGR 258
>gi|328945578|gb|EGG39729.1| cell division protein YlmE [Streptococcus sanguinis SK1087]
Length = 223
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 21/229 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A R KDSV+++AV+K VD + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAHRLKDSVNIIAVTKYVDCETTQELARTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
K+ L+ E ++ IGSLQ KV ++++ D + K A E+ K++
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAK----EIDKRAEHV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPH---F 174
+ ++QVN E K G + + + V+L + NV+ GLM + P + + F
Sbjct: 116 IKCFLQVNISKEESKHGFLIEELE--VVLPELEKLENVQIVGLMTMAPFEASHEELNQIF 173
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 174 EKAHQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|68488827|ref|XP_711760.1| hypothetical protein CaO19.10312 [Candida albicans SC5314]
gi|68488872|ref|XP_711736.1| hypothetical protein CaO19.2794 [Candida albicans SC5314]
gi|46433058|gb|EAK92514.1| hypothetical protein CaO19.2794 [Candida albicans SC5314]
gi|46433083|gb|EAK92538.1| hypothetical protein CaO19.10312 [Candida albicans SC5314]
Length = 277
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 110/214 (51%), Gaps = 27/214 (12%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSN 85
V+LVAVSK+ S I S G F EN +QE AK + +P D++ FIG LQS
Sbjct: 63 VNLVAVSKLKPSSDIMALYSIGVRHFGENYVQELIAKSQELP----NDIKWHFIGGLQSG 118
Query: 86 KVSEI---VSLFDVIETVSREKTASLLSLEMIK-QSRFLPVYIQVNTGYEIQKSGIMPNQ 141
K ++ V+ +ET+ K L +K + + V++Q+NT E QKSG Q
Sbjct: 119 KAKDLSKHVANLYAVETIDSLKKCKQLDNTRVKVEGDDINVFLQINTSGEEQKSGFQNLQ 178
Query: 142 ----TKDFVILCRQKYQLNVEGLMCIPP-----AMGNPKPH--FYLLSEIAR--ECKLT- 187
T +F++ K +L GLM I + N K + F L E+ + + K
Sbjct: 179 DIESTVEFLLSSDCK-KLKFLGLMTIGSFNESISNENDKENQDFKKLVEMKQILDSKYNL 237
Query: 188 --KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+LSMGM+ DF+ AI G+TSVR+G+ IFG RP
Sbjct: 238 NLELSMGMSNDFQQAIKQGSTSVRVGTTIFGSRP 271
>gi|311068059|ref|YP_003972982.1| hypothetical protein BATR1942_05485 [Bacillus atrophaeus 1942]
gi|310868576|gb|ADP32051.1| hypothetical protein BATR1942_05485 [Bacillus atrophaeus 1942]
Length = 230
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 26/232 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ ++I + + R D V+++AV+K V +++ + A+ G EN+ E
Sbjct: 1 MRVIDNLRHINERINEACNRSGRCSDEVTIIAVTKYVSAERAQEAVDAGISSLGENRDAE 60
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL-EMIKQS 117
K+ + +W FIGSLQS KV +V+ I ++ R LSL I++
Sbjct: 61 LLRKQDIVKGNPDW----HFIGSLQSRKVKAVVNNVSHIHSLDR------LSLANEIEKR 110
Query: 118 RFLPV--YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KP 172
PV ++QVNT E K G+ + V + V+GLM + P + +
Sbjct: 111 ATGPVRCFVQVNTSLEPSKHGMKQEEVIPLVQELAGFEHIIVDGLMTMAPLTEDTEKIRS 170
Query: 173 HFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
F L E+ + + T+LSMGM+ DFE+AI GAT +RIGS + G
Sbjct: 171 CFRALRELRDQVQKLKQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVG 222
>gi|156064729|ref|XP_001598286.1| hypothetical protein SS1G_00372 [Sclerotinia sclerotiorum 1980]
gi|154691234|gb|EDN90972.1| hypothetical protein SS1G_00372 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 265
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 108/226 (47%), Gaps = 37/226 (16%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQV-IFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQ 83
+V LVAVSK+ + I V F EN QE K + +P +W FIG LQ
Sbjct: 32 NVRLVAVSKLKPATDILALHEQANVEHFGENYAQELMEKAEILPRNIKW----HFIGGLQ 87
Query: 84 SNK---VSEIVSLFDVIETVSREKTASLLSL---------EMIKQSRFLPVYIQVNTGYE 131
SNK ++ +S ++ +V +K AS LS+ + L ++IQVNT E
Sbjct: 88 SNKCKPLASTISNLYLVSSVDSQKKASQLSIGRSLLPVPADSSSHPSPLNIHIQVNTSGE 147
Query: 132 IQKSGIMPNQTKDFVILCRQKYQ----LNVEGLMCIPPAM------GNPKPHFYLLSE-- 179
KSG+ P K+ LC+ + L + GLM I G F +L E
Sbjct: 148 SSKSGVTPG--KETTELCKYVIEECPFLKLVGLMTIGAIARSQMKEGEENEDFIVLREER 205
Query: 180 --IARECKLT--KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ +E L +LSMGM+ DFE AI G+ VR+GS IFG+RP +
Sbjct: 206 DRVEKELGLEGLELSMGMSEDFEEAIRQGSGEVRVGSTIFGQRPAK 251
>gi|322379239|ref|ZP_08053630.1| UPF0001 protein [Helicobacter suis HS1]
gi|322380918|ref|ZP_08054991.1| TIM-barrel fold-containing protein [Helicobacter suis HS5]
gi|321146655|gb|EFX41482.1| TIM-barrel fold-containing protein [Helicobacter suis HS5]
gi|321148379|gb|EFX42888.1| UPF0001 protein [Helicobacter suis HS1]
Length = 231
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 114/230 (49%), Gaps = 43/230 (18%)
Query: 10 FKQKIENSAILAKRPKDS---VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
F++K+E I ++ S V L+AVSK ++I+ +CGQ F ENK+Q+ + K
Sbjct: 19 FRKKLEQLLIRIEKASHSNHPVQLIAVSKYATIEQIKALYACGQCAFGENKIQDYQTKSN 78
Query: 67 PLRK---EWDVQLRFIGSLQSNKVSEIVSL-------------FDVIETVSREKTASLLS 110
L+ EW +G LQ NK++++++L + I+T ++E +LL
Sbjct: 79 ALQDLPLEW----HMLGVLQHNKINKLLALKPTLLHSLHSLELAEAIQTRAKEPLNALL- 133
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
QVN E KSGI PN + ++ + + Q++++GLM I P
Sbjct: 134 --------------QVNIAEESSKSGISPNLALQTYLTISQTCPQIHLKGLMVIGPLNAT 179
Query: 170 ---PKPHFYLLSEIARECKLTK-LSMGMTRDFELAIASGATSVRIGSGIF 215
+ F ++ + + LSMGM+ DFE+AIA G+ VRIG+ +F
Sbjct: 180 RVQTESVFKKAKKLFDQLPHAQILSMGMSGDFEIAIACGSNMVRIGNALF 229
>gi|259483672|tpe|CBF79253.1| TPA: alanine racemase family protein, putative (AFU_orthologue;
AFUA_4G04300) [Aspergillus nidulans FGSC A4]
Length = 272
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 116/236 (49%), Gaps = 49/236 (20%)
Query: 20 LAKRPKDSVSLVAVSKMVDSKKIRVALS---CGQVIFAENKLQE--AKKKWIPLRKEWDV 74
L K P+ LVAVSK+ + I +AL F EN LQE K + +P +W
Sbjct: 42 LPKEPR----LVAVSKLKPASDI-LALHNPPTAHSHFGENYLQELQEKARLLPPTIKW-- 94
Query: 75 QLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLLS-------LEMIKQSRFLPVYI 124
FIG LQSNK ++ +E+V EK A+LL EM + + L V++
Sbjct: 95 --HFIGGLQSNKCVSLARDTRALWAVESVDSEKKATLLDKGWGERKAEMGGEEK-LRVFV 151
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCR----QKYQLNVEGLMCI------PPAMGNPKPHF 174
QVNT E KSG+ P + + V LCR + +L ++GLM I +
Sbjct: 152 QVNTSGEENKSGVDPGE--EVVRLCRFIMDKCPRLRLQGLMTIGAIARSKATTAETENED 209
Query: 175 YLLSEIARE-----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ + ARE +L +LSMGM+ DFE AIA G+ VR+G+ IFG+RP
Sbjct: 210 FICLKQARERVNEALGLEGDARL-ELSMGMSEDFEGAIALGSDEVRVGTTIFGDRP 264
>gi|157136630|ref|XP_001663798.1| proline synthetase associated protein [Aedes aegypti]
gi|108880984|gb|EAT45209.1| proline synthetase associated protein [Aedes aegypti]
Length = 258
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 103/213 (48%), Gaps = 24/213 (11%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQE-AKKKWIP--LRKEWDVQLRFIGSLQSNK 86
LVAVSK + I S GQ F EN +QE +K P L D++ FIG LQ+NK
Sbjct: 40 LVAVSKTKPIELILDGYSIGQRDFGENYVQELIEKANDPRILEHCKDIRWHFIGHLQTNK 99
Query: 87 VSEIVSL--FDVIETVSREKTASLLSLEMIK------QSRFLPVYIQVNTGYEIQKSGIM 138
+++IV+L +I+TV K A L+ K + + L V IQ+NT E +K+G
Sbjct: 100 INKIVNLPNLHMIQTVHNAKLAEGLNKAWEKTKVEKPEKQQLNVLIQINTSGEDEKNGTQ 159
Query: 139 PNQTKDFVILCRQKY-QLNVEGLMCI----PPAMGNPKPHFYLL--------SEIARECK 185
P + + +K L G+M I P P F L S R+
Sbjct: 160 PAEAVNLYRFVTEKCPNLKCHGVMTIGRFGHDYSTGPNPDFIELMKCHQDICSTFERDPA 219
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++SMGM+ DF AI G+T VR+GS IFG R
Sbjct: 220 ELQVSMGMSDDFVQAIEMGSTIVRVGSSIFGAR 252
>gi|302561130|ref|ZP_07313472.1| YggS family pyridoxal phosphate enzyme [Streptomyces griseoflavus
Tu4000]
gi|302478748|gb|EFL41841.1| YggS family pyridoxal phosphate enzyme [Streptomyces griseoflavus
Tu4000]
Length = 239
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 24/210 (11%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW-----IPLRKEWDVQLRFIGSL 82
V+LV V+K + +R G AEN+ Q+A K +PL W F+G L
Sbjct: 33 VTLVVVTKTYPADDVRALAELGVRHVAENRDQDAAPKAAACADLPL--TW----HFVGQL 86
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV----NTGYEIQKSGIM 138
Q+NKV +V D +++V R + + LS E ++ R + IQV G ++ G+
Sbjct: 87 QTNKVRSVVGYADFVQSVDRSRLVTALSKEAVRAGREIGCLIQVALDAGEGGRGERGGVA 146
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPHFYLLSEIARECKLTK-----L 189
P + L + L + GLM + P G + F L +++ + + T +
Sbjct: 147 PGGVAELAGLIARSEGLRLGGLMTVAPLTGEYAGREQAAFGRLMDLSTDLRRTHPTANMV 206
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERP 219
S GM+ D E A+A+GAT VR+GS + G RP
Sbjct: 207 SAGMSADLEQAVAAGATHVRVGSAVLGVRP 236
>gi|323356547|ref|YP_004222943.1| hypothetical protein MTES_0099 [Microbacterium testaceum StLB037]
gi|323272918|dbj|BAJ73063.1| predicted enzyme with a TIM-barrel fold [Microbacterium testaceum
StLB037]
Length = 227
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 99/225 (44%), Gaps = 7/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L ++L +I ++A A R ++ + V+K +R + G EN+ QE
Sbjct: 4 ALADRLADVDARIADAARSAGRDLSGITRIVVTKFHPVSLVRELRALGVRDVGENRQQEL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D+ FIG Q+NK + + DV+ +V R + A +L+ L
Sbjct: 64 TAKRDELADVVDLHWHFIGQAQTNKARAVRAAADVVHSVDRPRIAD--ALDAAGSGDPLD 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V +QVN + + G+ P + L V G+M + P P F L A
Sbjct: 122 VLLQVNLTDDAGRGGVAPRDVEALATHVAGLSTLRVRGVMAVAPLDEEPARAFERLRGSA 181
Query: 182 RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ T +S GMT DF A+A GAT +RIGS I G RP +
Sbjct: 182 DAVRTVVPDATWISAGMTGDFPEAVAMGATHLRIGSAITGPRPVR 226
>gi|226224637|ref|YP_002758744.1| hypothetical protein Lm4b_02052 [Listeria monocytogenes Clip81459]
gi|225877099|emb|CAS05811.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
Length = 229
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 15/228 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQPEDVTLVAVTKTIDVAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K + L + D+ +IGSLQ+ KV +++ D + ++ R A + KQ +
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDRSSLAKEIEKRATKQ---V 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-KPH--FYLL 177
++QVN E K G + F+ + + + GLM + P + + H F+ L
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQEANFTF-IEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ +E T+LSMGMT D+ +AI GAT +R+G + +
Sbjct: 177 KQLQQEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVGRALVSD 224
>gi|302874635|ref|YP_003843268.1| alanine racemase domain-containing protein [Clostridium
cellulovorans 743B]
gi|307690753|ref|ZP_07633199.1| alanine racemase domain-containing protein [Clostridium
cellulovorans 743B]
gi|302577492|gb|ADL51504.1| alanine racemase domain protein [Clostridium cellulovorans 743B]
Length = 220
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 106/209 (50%), Gaps = 21/209 (10%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
PKD+V +VA SK ++I A + G F ENK+QE +K+ D+ FIG LQ
Sbjct: 15 PKDTV-IVAASKTRTLEEIEKAYNAGLRDFGENKVQEFVEKYEKCN--LDINWHFIGHLQ 71
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL----PVYIQVNTGYEIQKSGIMP 139
SNKV +V +I ++ + +LL+ E+ K+S+ L V IQVN E +K G
Sbjct: 72 SNKVKYLVGKNVLIHSID---SIALLN-EIEKKSQALGIETNVLIQVNIAKEQRKYGFYE 127
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLSEIARECK--------LTKL 189
+ K+ + + V+GLM I P + + +F + +I E K + L
Sbjct: 128 EELKEVLKTVEGFTNIKVKGLMTILPIESHEENRKYFRKVKDIFDEIKDINYINSEMKYL 187
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMGM+ D+ A+ G +R+G IFG+R
Sbjct: 188 SMGMSSDYIDAVKEGTNMIRVGEAIFGKR 216
>gi|296412370|ref|XP_002835897.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629694|emb|CAZ80054.1| unnamed protein product [Tuber melanosporum]
Length = 264
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 114/246 (46%), Gaps = 40/246 (16%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKI-RVALSCGQVIFAENKLQE- 60
L LQ Q+I + +A P +SV LVAVSK+ + + + G F EN E
Sbjct: 23 LAENLQAVLQRISS---VAHSP-NSVRLVAVSKLKPATDVLAIHERTGHTHFGENYSHEL 78
Query: 61 -AKKKWIPLRKEWDVQLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLLS------ 110
K +P W FIG+LQ+NK ++E + +E+V K A L
Sbjct: 79 LEKAASLPTALNW----HFIGALQTNKCKHLAERIPNLWAVESVDTVKKADALEKGRAAL 134
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT----KDFVILCRQKYQLNVEGLMCIPPA 166
L + L VY+QVNT E KSG P K + C+ L ++GLM I
Sbjct: 135 LSTSPSTPKLRVYVQVNTSGEESKSGCQPTAAPVLAKHILEECKH---LTLQGLMTIGAI 191
Query: 167 MGN-----PKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSG 213
+ P F L E+A+ + +LSMGM+ DFE A++ G ++VR+G+
Sbjct: 192 ARSRESDIPNEDFLTLKRVRDEVAQRVGIDSDQLELSMGMSEDFEQAVSLGTSNVRVGTI 251
Query: 214 IFGERP 219
IFG+RP
Sbjct: 252 IFGQRP 257
>gi|255322257|ref|ZP_05363403.1| pyridoxal phosphate enzyme, YggS family [Campylobacter showae
RM3277]
gi|255300630|gb|EET79901.1| pyridoxal phosphate enzyme, YggS family [Campylobacter showae
RM3277]
Length = 211
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 33/226 (14%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
KL ++IEN+ R ++V L+AVSK V +K++ L GQ F EN++QE K K
Sbjct: 2 KLAQILERIENA-----RTGEAVKLIAVSKNVTTKEVLELLEQGQTSFGENRVQELKNKS 56
Query: 66 IPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLP 121
L EW FIG LQSNK++ +++L + ++ + A + ++ + LP
Sbjct: 57 EILSNLPIEW----HFIGRLQSNKINHLLALKPALWQSCESVEAALAVDKRLVCE---LP 109
Query: 122 VYIQVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKP-------- 172
+Q+N+ +E K GI P +D F+ + ++ L G+M I + + K
Sbjct: 110 CLLQINSAHEDSKQGISPEAAQDAFLQIAQECKFLKPIGVMSIGAHVDDEKVVKKSFETT 169
Query: 173 ---HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ L S+ A+ C SMGM+ DFELAI G+ +R+GS ++
Sbjct: 170 RKIYENLQSKGAQIC-----SMGMSGDFELAIKCGSNMIRLGSILY 210
>gi|154322825|ref|XP_001560727.1| hypothetical protein BC1G_00755 [Botryotinia fuckeliana B05.10]
gi|150848089|gb|EDN23282.1| hypothetical protein BC1G_00755 [Botryotinia fuckeliana B05.10]
Length = 265
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 106/226 (46%), Gaps = 37/226 (16%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQV-IFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQ 83
+V LVAVSK+ + I V F EN QE K + +P +W FIG LQ
Sbjct: 32 NVRLVAVSKLKPATDILALHEQANVEHFGENYAQELMEKAEILPRSIKW----HFIGGLQ 87
Query: 84 SNKVSEIVSL---FDVIETVSREKTASLLSL-----EMIKQSRFLP----VYIQVNTGYE 131
SNK + S ++ ++ +K AS LSL M S P ++IQ+NT E
Sbjct: 88 SNKCKPLASTVFNLHLVSSIDSQKKASQLSLGRSLLPMPADSNSPPSPLNIHIQLNTSGE 147
Query: 132 IQKSGIMPNQTKDFVILCRQKYQ----LNVEGLMCIPPAM------GNPKPHFYLLSE-- 179
KSG+ P KD LC+ + L + G M I G F +L E
Sbjct: 148 SSKSGVSPG--KDTTELCKYVIEECPYLKLVGFMTIGAIARSQMKEGEENEDFKVLREER 205
Query: 180 --IARECKLT--KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ +E L +LSMGM+ DFE AI G+ VR+GS IFG+RP +
Sbjct: 206 DRVEKELGLEGLELSMGMSEDFEEAIRQGSGEVRVGSTIFGQRPAK 251
>gi|152976261|ref|YP_001375778.1| alanine racemase domain-containing protein [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152025013|gb|ABS22783.1| alanine racemase domain protein [Bacillus cytotoxicus NVH 391-98]
Length = 224
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L V +++++ + A R V LVAV+K V +K + G EN+ +
Sbjct: 1 MTVQENLAVIQEEMKQACERAGRSIHDVKLVAVTKTVGIEKTNEVVEAGIADLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + V FIGSLQ+ KV EI+S D + ++ R LSL Q R
Sbjct: 61 FLQKYEHFGSQ--VNWHFIGSLQTRKVKEIISHIDYLHSLDR------LSLAREIQKRAT 112
Query: 121 -PV--YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP----- 172
PV +IQV T E K G+ + +FV ++ ++ V GLM + P +
Sbjct: 113 KPVKCFIQVKTSREESKQGLQVEELIEFVHALKEFDKIEVVGLMTMAPFTEDEAEIRGCF 172
Query: 173 -HFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+L + +E +L+ +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 173 KTLRMLQQQVQELRLSYAPCKELSMGMSNDYTIAIEEGATYIRLGTILVG 222
>gi|330686339|gb|EGG97944.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus epidermidis
VCU121]
Length = 223
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 104/217 (47%), Gaps = 20/217 (9%)
Query: 16 NSAILAKRPKDSVS----LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
N I R K ++S ++AV+K V ++ + A G F EN+L+ K+K L K
Sbjct: 12 NLEINEHREKSNISTQPNVIAVTKYVTIERAKEAYQAGIRHFGENRLEGFKEKKEALPK- 70
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
D L FIGSLQS KV ++++ D + R A ++ + + ++QVN E
Sbjct: 71 -DAVLHFIGSLQSRKVKDVINDVDYFHALDRMSLAKEINK---RAEHTISCFLQVNVSGE 126
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK--- 185
K GI ++ F+ +Q + + GLM + P + + F L E K
Sbjct: 127 SSKHGISLDEVNAFIEEIKQFENIKIVGLMTMAPYTDDNAYIQSLFRKLRTKRDEIKKLN 186
Query: 186 -----LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+LSMGM+ D+ +AI GAT VRIG+ + GE
Sbjct: 187 LEYAPCEELSMGMSNDYPIAIEEGATFVRIGTKLVGE 223
>gi|257468458|ref|ZP_05632552.1| proline synthetase associated protein [Fusobacterium ulcerans ATCC
49185]
gi|317062721|ref|ZP_07927206.1| proline synthetase associated protein [Fusobacterium ulcerans ATCC
49185]
gi|313688397|gb|EFS25232.1| proline synthetase associated protein [Fusobacterium ulcerans ATCC
49185]
Length = 225
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 99/199 (49%), Gaps = 14/199 (7%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW--DVQLRFIGSLQSNKV 87
+AV+K V +++ + CG +F ENK Q K K + DV+ FIG+LQ NKV
Sbjct: 27 FIAVTKYVGPEEMLPIIDCGVKVFGENKAQVMKDKQEKFNEMGIKDVEWHFIGNLQKNKV 86
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFV 146
I +I +V++ A + + +R + V +++N E K G + K+
Sbjct: 87 KYIAEYVKMIHSVNKLSLAQEIDKRAEQYNRVIDVLLEINIAGEESKEGYDLEELYKELP 146
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAREC-------KLTKLSMGMTRD 196
L K +N+ GLM + P + + + F L EI E KL +LSMGMT D
Sbjct: 147 QLMELK-NINIIGLMTMAPFVEDEELLRSVFKRLREIKDELNEKWFKGKLVELSMGMTND 205
Query: 197 FELAIASGATSVRIGSGIF 215
+++A+ GAT +R+G IF
Sbjct: 206 YKIALEEGATLIRVGRKIF 224
>gi|255994435|ref|ZP_05427570.1| pyridoxal phosphate enzyme, YggS family [Eubacterium saphenum ATCC
49989]
gi|255993148|gb|EEU03237.1| pyridoxal phosphate enzyme, YggS family [Eubacterium saphenum ATCC
49989]
Length = 230
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 94/209 (44%), Gaps = 28/209 (13%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V L V+K +IR A+ G++ ENK+QE K+ V IG LQ+NKV
Sbjct: 32 VMLCTVTKTRSISEIREAVDAGEIHLGENKVQEITDKFEHFNG---VNFHMIGHLQTNKV 88
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
I+ +I ++ K A + + V +QVN E K G+ P++ +F+
Sbjct: 89 KYIIDKVFLIHSLDSIKLAKEIDKRAKQHGITANVLVQVNISNEESKYGLSPDEVDEFIE 148
Query: 148 LCRQKYQ-LNVEGLMCIPPAMGNPKPHFYLLSEIARE----------------CKLTKLS 190
Y + V+GLM + P + SE ARE + LS
Sbjct: 149 SVTADYDNILVKGLMSMAPIVKK--------SEDAREYFEKTKKMFDNYRQKYSQFEYLS 200
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERP 219
MGM+ D+E+AI GA VR+G+ IFG R
Sbjct: 201 MGMSGDYEVAIECGANIVRVGTSIFGPRS 229
>gi|322690406|ref|YP_004219976.1| hypothetical protein BLLJ_0214 [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320455262|dbj|BAJ65884.1| conserved hypothetical protein [Bifidobacterium longum subsp.
longum JCM 1217]
Length = 277
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 104/246 (42%), Gaps = 40/246 (16%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
+I ++ A R SV L+A +K D +I A+ G + EN+ QE K L K
Sbjct: 32 DRIASAESAAGRAAGSVQLLAATKTRDVGEILAAIDAGIRVIGENRPQEITVKADGLAKR 91
Query: 72 W------------------------DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS 107
+ IG LQ+NK+ +++ + D IE+V + A
Sbjct: 92 LGERGYSLGVIDAAEADTANAAAATHIPFHLIGQLQANKIGKVLPVVDTIESVDSIELAE 151
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM 167
++ + + V ++VN E KSG P+ D L ++GLM I +
Sbjct: 152 KIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQGLMTIGAHV 211
Query: 168 GNPK---PHFYLL-----------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSG 213
+ + F L +E +C T+LSMGMT D AI G+T VR+G+
Sbjct: 212 DDERTIRAGFAHLRRTRDQIIASGAEGTADC--TELSMGMTHDMTYAIEEGSTIVRVGTA 269
Query: 214 IFGERP 219
IFGER
Sbjct: 270 IFGERA 275
>gi|313157824|gb|EFR57235.1| pyridoxal phosphate enzyme, YggS family [Alistipes sp. HGB5]
Length = 221
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 14/206 (6%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
P+D V+LVAVSK + IR A G +F E++ QE ++K+ L + D++ IG LQ
Sbjct: 15 PED-VTLVAVSKTHPVEAIREAYDAGHRVFGESRPQELREKYEALPQ--DIEWHMIGHLQ 71
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
+NK+ I +I +V + A + E K R + + ++++ E KSG +
Sbjct: 72 TNKIKYIAPFVSLIHSVDSARLAEAIQREAAKCGRTIEILLEIHVADEETKSGWEIGELM 131
Query: 144 DFVILC--RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR---------ECKLTKLSMG 192
+V + + V G+M I + + +E+ R + LSMG
Sbjct: 132 RYVGTAPFARMPDVCVRGVMGIATNTDDGEVIRRDFTELKRCFDLLQPYFGARFNVLSMG 191
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D+ A+ G+ VR+GS IFGER
Sbjct: 192 MSHDYPFAVECGSNMVRVGSLIFGER 217
>gi|157823503|ref|NP_001100790.1| proline synthase co-transcribed bacterial homolog protein [Rattus
norvegicus]
gi|149057846|gb|EDM09089.1| proline synthetase co-transcribed (predicted) [Rattus norvegicus]
Length = 275
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 123/243 (50%), Gaps = 28/243 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ S +A+RP+ LVAVSK ++ + A GQ F EN
Sbjct: 11 LGVGLALRAVNERVQQS--VARRPRGLPAIQPRLVAVSKTKPTEMVIEAYGHGQRTFGEN 68
Query: 57 KLQEAKKKW---IPLRKEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSL 111
+QE +K L +++ FIG LQ V++++++ ++ET+ K A ++
Sbjct: 69 YVQELLEKASNPTLLSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETIDSVKLADKVNS 128
Query: 112 EMIKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAMG 168
K+ L V +Q+NT E K G++P++T V + L GLM I + G
Sbjct: 129 SWQKKGSPERLKVMVQINTSGEDSKHGLLPSETVAVVEHIKASCPNLEFVGLMTIG-SFG 187
Query: 169 N-----PKPHFYLLSEIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ P P F L + +E + +LSMGM+ DF+ AI G+T++R+GS IF
Sbjct: 188 HDLSQGPNPDFQRLLSLRQELCEKLGLPVEQVELSMGMSVDFQHAIEVGSTNIRVGSTIF 247
Query: 216 GER 218
GER
Sbjct: 248 GER 250
>gi|270292374|ref|ZP_06198585.1| YlmE protein [Streptococcus sp. M143]
gi|270278353|gb|EFA24199.1| YlmE protein [Streptococcus sp. M143]
Length = 223
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 17/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + Q++ ++ A R SVS++AV+K VD K L G EN++ +
Sbjct: 1 MDLKKNTEFVFQQVAEASREANRDPASVSIIAVTKYVDVKTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
+K+ L KE+ V IG+LQ KV E++ D + K L+ E+ K++
Sbjct: 61 FLEKYQTL-KEFPVTWHLIGTLQRRKVKEVIPFVDYFHALDSLK----LAQEIQKRTDHV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ ++QVN E K G + + + Q Q+ GLM + P + K F
Sbjct: 116 IKCFLQVNISGEESKHGFSKKELLELLPDLAQLDQIEYVGLMTMAPFEADSDELKQIFKK 175
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ E + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 176 TQELQAEIREKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTAFF 222
>gi|241949269|ref|XP_002417357.1| conserved hypothetical protein [Candida dubliniensis CD36]
gi|223640695|emb|CAX45006.1| conserved hypothetical protein [Candida dubliniensis CD36]
Length = 246
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 108/213 (50%), Gaps = 26/213 (12%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSN 85
V+LVAVSK+ S I S G F EN +QE +K + +P +W FIG LQS
Sbjct: 34 VNLVAVSKLKPSSDIMALYSIGVRHFGENYVQELISKSQELPPDIKW----HFIGGLQSG 89
Query: 86 KVSEI---VSLFDVIETVSREKTASLL--SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
K ++ V +ET+ K L + I S + V++QVNT E QKSG
Sbjct: 90 KAKDLSKHVKNLYAVETIDSLKKCKQLDNTRNKIDGSDDINVFLQVNTSGEEQKSGFQNL 149
Query: 141 Q----TKDFVILCRQKYQLNVEGLMCI---PPAMGNPKPH--FYLLSEIAR--ECKLT-- 187
Q T +F++ K +L GLM I ++ N + F L E+ + + K
Sbjct: 150 QDIESTVEFLLSSDCK-KLKFLGLMTIGSFNESISNEGENQDFKKLVEMKQILDSKYNLN 208
Query: 188 -KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+LSMGM+ DFE AI G+TSVR+G+ IFG RP
Sbjct: 209 LELSMGMSSDFEQAIKQGSTSVRVGTTIFGSRP 241
>gi|212696214|ref|ZP_03304342.1| hypothetical protein ANHYDRO_00750 [Anaerococcus hydrogenalis DSM
7454]
gi|212676843|gb|EEB36450.1| hypothetical protein ANHYDRO_00750 [Anaerococcus hydrogenalis DSM
7454]
Length = 224
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 104/223 (46%), Gaps = 21/223 (9%)
Query: 10 FKQKIENSAILAKRPKD-SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWI 66
K I+N L K KD L+AV+K KI + G F ENK+QE KK +
Sbjct: 3 IKDNIDN---LKKDMKDYDAMLLAVTKTHGVDKIMEVYNYGLRDFGENKVQELLDKKDKL 59
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
P W IG LQ+NKV++IV +I +V K ++ K S +Q+
Sbjct: 60 PDDINW----HLIGHLQTNKVNKIVGEVCLIHSVDSLKILKKINNRAKKLSIVQDCLLQI 115
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP----------KPHFYL 176
N E KSG +D + ++ + + GLM + P + K F
Sbjct: 116 NISKEESKSGFYEEDIEDIINQAKELENVKIRGLMTMAPNTEDVSVIKSCFKGLKKIFDN 175
Query: 177 LSEIA-RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LS ++ ++ LSMGMT D+++A+ GA +R+GS IFG+R
Sbjct: 176 LSNLSYNNIEMEYLSMGMTHDYKIALEEGANIIRVGSKIFGKR 218
>gi|328872372|gb|EGG20739.1| hypothetical protein DFA_00602 [Dictyostelium fasciculatum]
Length = 229
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 99/196 (50%), Gaps = 12/196 (6%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL 76
AI +K +V+LVAVSK S IR GQ F EN +QE + K L D++
Sbjct: 35 DAIKSKITNPNVTLVAVSKTKPSFMIRALYEHGQRHFGENYIQELQTKSDELSDLVDIKW 94
Query: 77 RFIGSLQSNKVS--EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
FIGS+QSNK+ E V VIET+ ++ TA L+ Q+ + + +QVNT E K
Sbjct: 95 HFIGSIQSNKLKLLETVKSLHVIETIEKQSTADKLAKSWPHQTP-INIMVQVNTSGEDSK 153
Query: 135 SGIMP----NQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-KPHFYLLSE----IARECK 185
SG P N K + + K +L V GLM I +P +P F L E I++E
Sbjct: 154 SGCEPGEIVNIVKHLITDEKCKQKLKVIGLMTIGSPNASPDQPDFKKLVECKENISKELG 213
Query: 186 LTKLSMGMTRDFELAI 201
+ K S+G+ EL +
Sbjct: 214 IDKESIGLIPMLELVV 229
>gi|316964562|gb|EFV49608.1| pyridoxal phosphate enzyme, YggS family [Trichinella spiralis]
Length = 256
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 100/214 (46%), Gaps = 27/214 (12%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNK 86
LVAVSK I A + GQ F EN +QE +K L D++ FIG LQ NK
Sbjct: 35 LVAVSKRKPVVDICAAYAAGQRHFGENYVQELIEKANDEQLLVACPDIRWHFIGHLQLNK 94
Query: 87 VS---EIVSLFDVIETVSREKTASLLSLEMIKQSRF-------LPVYIQVNTGYEIQKSG 136
V E V V+ETV K A +L + + R + V +QVNT EIQK G
Sbjct: 95 VRKLIENVPNLHVVETVDSVKLAE--TLNRVARGRVDQTLLGKINVMLQVNTSGEIQKHG 152
Query: 137 IMPNQTKDFVILCRQKYQ-LNVEGLM-------CIPPAMGNPKPHFYLLSEIAR----EC 184
P Q + Q L + GLM C A G F + ++I E
Sbjct: 153 CEPEQVLQLARMVVQDCPFLQLIGLMTIGTASSCAEVARGEFSKLFQIRNQICTDLDWEV 212
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ DF+ AI G++SVR+GS IFG R
Sbjct: 213 GQLELSMGMSNDFQEAICCGSSSVRVGSAIFGSR 246
>gi|187607726|ref|NP_001119881.1| proline synthase co-transcribed bacterial homolog protein [Danio
rerio]
gi|169642405|gb|AAI60662.1| Prosc protein [Danio rerio]
Length = 283
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 122/242 (50%), Gaps = 28/242 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+G K+Q +++ N A+ ++RPK LVAVSK + + A GQ F EN +
Sbjct: 11 VGKKVQAVVERV-NQAV-SRRPKTLPCIPPRLVAVSKTKPPEMVVEAYKHGQRNFGENYV 68
Query: 59 QE-AKKKWIP--LRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEM 113
E +K P L +++ FIG LQ V++++ + ++ +ET+ K A ++
Sbjct: 69 NELVEKASNPQILSSCPEIKWHFIGHLQKGNVNKLLGVPNLYMVETIDSVKLAEKVNSSW 128
Query: 114 IK----QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV-ILCRQKYQLNVEGLMCIP---- 164
K + L + +Q+NT E K G+ P++T + V + Q L++ GLM I
Sbjct: 129 QKLRAANTHRLKIMVQINTSGEDSKHGLPPDETVNMVKHVVSQCPALDLAGLMTIGRYGY 188
Query: 165 PAMGNPKPHFYLL----SEIARECKL----TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
P P F LL E+ K+ +LSMGM+ DFE AI G+T++R+GS IFG
Sbjct: 189 DLNDGPNPDFQLLLKCRVEVCESLKIPLEQVELSMGMSTDFEHAIEVGSTNIRVGSTIFG 248
Query: 217 ER 218
R
Sbjct: 249 TR 250
>gi|33862479|ref|NP_894039.1| hypothetical protein PMT0206 [Prochlorococcus marinus str. MIT
9313]
gi|33640592|emb|CAE20381.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 225
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 97/202 (48%), Gaps = 3/202 (1%)
Query: 20 LAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFI 79
L R D V L+AVSK + IR GQ F E++LQEA K L ++ FI
Sbjct: 10 LVDRLADGVHLLAVSKGHPATLIRQLAELGQQDFGESRLQEALPKLEALADLKGLRWHFI 69
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G LQ+NKV +V F VI +V A +S +++ V +QV + K G
Sbjct: 70 GRLQANKVRGVVRSFAVIHSVDSLALAERISRIAVEEQCCPQVMLQVKFRDDPSKGGFSQ 129
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECKLTKLSMGMTRD 196
Q K Q L + GLM + P ++ + F E+A + L SMGM+ D
Sbjct: 130 EQLKQAWPDLIQLSHLQLIGLMTMAPIGLSLEQRQELFGQCRELADQLGLPDCSMGMSGD 189
Query: 197 FELAIASGATSVRIGSGIFGER 218
+ A+ +GAT +R+GS +FG R
Sbjct: 190 WLEAMHAGATWLRLGSLLFGAR 211
>gi|119486907|ref|XP_001262373.1| alanine racemase family protein, putative [Neosartorya fischeri
NRRL 181]
gi|119410530|gb|EAW20476.1| alanine racemase family protein, putative [Neosartorya fischeri
NRRL 181]
Length = 267
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 117/255 (45%), Gaps = 46/255 (18%)
Query: 7 LQVFKQKIENSAILAKRPKD-SVSLVAVSKMVDSKKIRVALS---CGQVIFAENKLQE-- 60
L ++ +A+ A RP + L+AVSK+ + I +AL + F EN LQE
Sbjct: 15 LSSVTSRVSTAALNANRPATKPIRLIAVSKLKPAADI-LALHNPPTNHLHFGENYLQELL 73
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLLS------- 110
K K +P W FIG LQSNK ++ V +E++ EK ASLL
Sbjct: 74 EKSKLLPPSIRW----HFIGGLQSNKCVTLARDVRGLWAVESIDSEKKASLLDRGWGERS 129
Query: 111 --LEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQK-YQLNVEGLMCI--- 163
+ + L V +QVNT E K+G+ P R+K +L ++G+M I
Sbjct: 130 EEVRGVAHEDRLRVLVQVNTSGEENKAGVDPVAGAVPLARFIREKCPRLKLQGVMTIGAI 189
Query: 164 ------PPAMGNPKPHFYLLSE----IARECKLT------KLSMGMTRDFELAIASGATS 207
P N F L E I RE L +LSMGM+ DFE AI G+
Sbjct: 190 ARSKATTPETENED--FVCLRETRDRIVRELGLQGDDAELELSMGMSEDFEGAIKLGSDE 247
Query: 208 VRIGSGIFGERPCQT 222
VR+G+ IFGERP ++
Sbjct: 248 VRVGTTIFGERPPKS 262
>gi|58581040|ref|YP_200056.1| hypothetical protein XOO1417 [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58425634|gb|AAW74671.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 176
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 77/172 (44%), Gaps = 15/172 (8%)
Query: 58 LQEAKKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
+QEA K LR EW IG LQSNK FD ++TV R K LL+
Sbjct: 1 MQEADAKIAQLRALGLEW----HLIGHLQSNKAELASQCFDWVQTVDRAKLIPLLARHRP 56
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPK 171
L V IQVN E K G P + +L + GLM IP P
Sbjct: 57 DDCAPLNVLIQVNIDDEDSKHGCAPEAIDSLAAAIALQPRLQLRGLMAIPAPFPDQARRG 116
Query: 172 PHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F + + + K + LSMGM+ DF AIA+GAT VR+G+ +FG R
Sbjct: 117 AAFTRMQVLFEQLKTRYRQVDTLSMGMSSDFAEAIAAGATMVRMGTALFGAR 168
>gi|321475478|gb|EFX86441.1| hypothetical protein DAPPUDRAFT_313114 [Daphnia pulex]
Length = 316
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 105/210 (50%), Gaps = 20/210 (9%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSN 85
+LVAVSK + A GQ F EN + E K L + D++ IG LQSN
Sbjct: 36 TLVAVSKTKPVDDVIEAYHGGQRHFGENYIPELGGKSTDPKILEECPDIRWHMIGHLQSN 95
Query: 86 KVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQ 141
K+ ++ S+ ++ +ET+ K A L+ IK ++ L V +QV T E KSG+ P++
Sbjct: 96 KMKKLASVQNLYMVETIDSVKIADALNKSWIKLNKMEKLKVMVQVKTSDEETKSGVEPSE 155
Query: 142 TKDFVILCRQKY-QLNVEGLMCIPPAMGN----PKPHFYLLSEIARECKLT--------K 188
+K +L GLM I + + P P F + E +E +
Sbjct: 156 AIKLAKFIIEKCPELEFCGLMTIGASNYDVSLGPNPDFLKMIECHKEITCIPDLPKESLE 215
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D+E AI G+T+VR+GS IFG+R
Sbjct: 216 LSMGMSSDYEHAIELGSTNVRVGSLIFGQR 245
>gi|294942693|ref|XP_002783649.1| proline synthetase associated protein, putative [Perkinsus marinus
ATCC 50983]
gi|239896151|gb|EER15445.1| proline synthetase associated protein, putative [Perkinsus marinus
ATCC 50983]
Length = 246
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 108/219 (49%), Gaps = 22/219 (10%)
Query: 20 LAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
L+K + V L+AVSK + A CGQ F EN +QE +K + K D+Q
Sbjct: 26 LSKGRDEEVKLLAVSKTKPMDMLMEAYEKCGQRHFGENYVQELMEKAREMPK--DIQWHM 83
Query: 79 IGSLQSNKVSEI---------VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
IG LQ NKV+ + V D I+ + A+ +++ +S L V+I+V T
Sbjct: 84 IGHLQRNKVAPLLKAVPHLYAVESVDSIKLADKLNAAAATAMDEGLRSEPLNVFIEVMTS 143
Query: 130 YEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSEI----AR 182
EI K+G+ ++ D + + L + GLM + P + + +F L+ I +
Sbjct: 144 DEITKTGVEKDEDIDALAEHIATHCQGLKLFGLMTVANPDLEIARENFERLAAIRERLEK 203
Query: 183 ECKLT---KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LT +LSMGMT D +AI G+T VR+GS IFG R
Sbjct: 204 NLSLTYKLELSMGMTHDMPIAIECGSTEVRVGSAIFGAR 242
>gi|228476819|ref|ZP_04061464.1| pyridoxal phosphate enzyme, YggS family [Streptococcus salivarius
SK126]
gi|228251393|gb|EEK10538.1| pyridoxal phosphate enzyme, YggS family [Streptococcus salivarius
SK126]
Length = 227
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 108/224 (48%), Gaps = 16/224 (7%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
NK V+ Q ++ + A R D V+++AV+K V S + G AEN++ + K
Sbjct: 6 NKNNVY-QAVKKACEKANRSSDDVNIIAVTKYVPSDVAEDLVKTGIKHIAENRVDKFLDK 64
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ L K +D+ IG+LQ KV ++++L D + K A + + + ++
Sbjct: 65 YQAL-KNYDLTWHLIGTLQRRKVKDVINLVDYFHALDSVKLAEEIQK---RADHTINCFL 120
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA--- 181
QVN E K G P + + ++ + GLM + P + + + +E
Sbjct: 121 QVNVSGEESKHGFSPEELDTVLKQIEILDKICIVGLMTMAPIDADAQELDKIFAETNELR 180
Query: 182 ---RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E KL +LSMGM+RD+++AI +G+T VRIGS F E
Sbjct: 181 QSIQEKKLKNVPCDQLSMGMSRDYDMAIQNGSTFVRIGSAFFKE 224
>gi|67541707|ref|XP_664621.1| hypothetical protein AN7017.2 [Aspergillus nidulans FGSC A4]
gi|40742473|gb|EAA61663.1| hypothetical protein AN7017.2 [Aspergillus nidulans FGSC A4]
Length = 349
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 116/236 (49%), Gaps = 49/236 (20%)
Query: 20 LAKRPKDSVSLVAVSKMVDSKKIRVALS---CGQVIFAENKLQE--AKKKWIPLRKEWDV 74
L K P+ LVAVSK+ + I +AL F EN LQE K + +P +W
Sbjct: 119 LPKEPR----LVAVSKLKPASDI-LALHNPPTAHSHFGENYLQELQEKARLLPPTIKW-- 171
Query: 75 QLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLLS-------LEMIKQSRFLPVYI 124
FIG LQSNK ++ +E+V EK A+LL EM + + L V++
Sbjct: 172 --HFIGGLQSNKCVSLARDTRALWAVESVDSEKKATLLDKGWGERKAEMGGEEK-LRVFV 228
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCR----QKYQLNVEGLMCI------PPAMGNPKPHF 174
QVNT E KSG+ P + + V LCR + +L ++GLM I +
Sbjct: 229 QVNTSGEENKSGVDPGE--EVVRLCRFIMDKCPRLRLQGLMTIGAIARSKATTAETENED 286
Query: 175 YLLSEIARE-----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ + ARE +L +LSMGM+ DFE AIA G+ VR+G+ IFG+RP
Sbjct: 287 FICLKQARERVNEALGLEGDARL-ELSMGMSEDFEGAIALGSDEVRVGTTIFGDRP 341
>gi|330918264|ref|XP_003298159.1| hypothetical protein PTT_08769 [Pyrenophora teres f. teres 0-1]
gi|311328814|gb|EFQ93739.1| hypothetical protein PTT_08769 [Pyrenophora teres f. teres 0-1]
Length = 269
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 114/254 (44%), Gaps = 52/254 (20%)
Query: 8 QVFKQKIENSAILAKR----PKDS--VSLVAVSKMVDSKKIRVALSCG----QVIFAENK 57
Q KQ EN A ++ R KD V L+AVSK+ + I +AL F EN
Sbjct: 10 QRAKQLAENIATISSRIKAVSKDGKQVRLIAVSKLKPANDI-LALHQKPDPIHTHFGENY 68
Query: 58 LQE--AKKKWIPLRKEWDVQLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLLS-- 110
+QE K K +P W IG LQSNK ++E + + +V EK A+ L
Sbjct: 69 VQELIEKSKLLPRTIRW----HMIGGLQSNKCKQLAEQIPNLWCVSSVDSEKKANELEKG 124
Query: 111 ----LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ----LNVEGLMC 162
E L V +QVNT E +KSG+ P+ D + LCR + L + GLM
Sbjct: 125 RKALSEKDNSEEKLRVKVQVNTSGEKEKSGVEPS---DAITLCRHIIEKCPHLQLSGLMT 181
Query: 163 I-------PPAMGNPKPHFYLLSEIARECKLTK----------LSMGMTRDFELAIASGA 205
I N F L E K+TK LSMGM+ DFE AI G+
Sbjct: 182 IGAIARSKATTPENENEDFVALRETRD--KVTKELGWEEGQLELSMGMSADFEGAIRMGS 239
Query: 206 TSVRIGSGIFGERP 219
VR+GS IFGERP
Sbjct: 240 DEVRVGSEIFGERP 253
>gi|320539546|ref|ZP_08039213.1| pyridoxal phosphate enzyme [Serratia symbiotica str. Tucson]
gi|320030399|gb|EFW12411.1| pyridoxal phosphate enzyme [Serratia symbiotica str. Tucson]
Length = 207
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 101/206 (49%), Gaps = 19/206 (9%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK---WIPLRKEWDVQLRFIGSLQS 84
++L+AVSK I A++ GQ F EN +QE K + L + ++ FIG LQS
Sbjct: 1 MTLLAVSKTKPVAVIAEAIAAGQRTFGENYVQEGVDKIQHFAALPEGTALEWHFIGPLQS 60
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI----MPN 140
NK + F +TV R + A L+ + L V IQ+N E KSGI +P
Sbjct: 61 NKSRLVAEHFAWCQTVDRLRIAERLNNQRPATMAPLNVLIQINISDEQSKSGIVLDALPA 120
Query: 141 QTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKP-------HFYLLSEIARECKLTKLSMG 192
+ V L L + GLM IP P + P+ + L+ R ++ LSMG
Sbjct: 121 LAEAIVALP----NLMLRGLMAIPAPEVVYPRQLAVFGQMNDAFLALRQRYPQVDTLSMG 176
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
MT D AIA+G+T VRIG+ IFG R
Sbjct: 177 MTDDMAAAIAAGSTMVRIGTAIFGHR 202
>gi|148241568|ref|YP_001226725.1| TIM-barrel fold family protein [Synechococcus sp. RCC307]
gi|147849878|emb|CAK27372.1| Predicted enzyme with a TIM-barrel fold [Synechococcus sp. RCC307]
Length = 212
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 100/203 (49%), Gaps = 6/203 (2%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
AIL + P V L+AVSK + +IR GQ F E+++QEA K L D+ +
Sbjct: 10 AILQELPP-GVKLLAVSKGRSAAEIRALYGLGQRSFGESRVQEAALKQQELADLADIDWQ 68
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP-VYIQVNTGYEIQKSG 136
FIG LQ+NKV ++ F I V A+ +S + + P +Y+Q+ + K+G
Sbjct: 69 FIGRLQANKVRPVLKAFTTIHAVDSFNLAARVS-RIAGELGLCPQLYLQLKLRPDANKAG 127
Query: 137 IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI---ARECKLTKLSMGM 193
+ + + + ++ +G+M IPP + L +E A L SMGM
Sbjct: 128 LSWAEAQSLWPQLQNLPHVHWQGVMVIPPRELAEQDLGALFAEAVGHADALGLAGRSMGM 187
Query: 194 TRDFELAIASGATSVRIGSGIFG 216
+ D+ LA G+T VR+GS +FG
Sbjct: 188 SGDWPLAAQQGSTVVRVGSALFG 210
>gi|154175245|ref|YP_001408198.1| hypothetical protein CCV52592_1134 [Campylobacter curvus 525.92]
gi|112802459|gb|EAT99803.1| conserved hypothetical protein [Campylobacter curvus 525.92]
Length = 211
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 109/200 (54%), Gaps = 13/200 (6%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
++V+LVAVSK V S +++ + GQ +F EN++QE KK L + D++ IG LQ+
Sbjct: 15 NENVTLVAVSKNVSSTEVKALYAQGQRVFGENRVQELAKKCSELGEFTDIKWHMIGRLQN 74
Query: 85 NKVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRF-LPVYIQVNTGYEIQKSGI-MPNQ 141
NK+++++SL + ++ + AS E+ K+ F L +Q+N+ E K G+ N
Sbjct: 75 NKINQLLSLRPALWQSCDSFERAS----EVNKRLNFTLDTLLQINSANEDSKQGVSYENA 130
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HF---YLLSEIARECKLTKLSMGMTR 195
++ ++ + Q +N++G+M I + + F Y + E R SMGM+
Sbjct: 131 SEIYMRIKEQCKNINLKGVMSIGAHSDDEREVQKSFELSYKIFENLRAHGAQICSMGMSS 190
Query: 196 DFELAIASGATSVRIGSGIF 215
DF LAI G+ +R+GS ++
Sbjct: 191 DFRLAIKCGSNMIRLGSLLY 210
>gi|76788184|ref|YP_329214.1| hypothetical protein SAK_0582 [Streptococcus agalactiae A909]
gi|76798290|ref|ZP_00780537.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
18RS21]
gi|77405597|ref|ZP_00782687.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
H36B]
gi|76563241|gb|ABA45825.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
A909]
gi|76586362|gb|EAO62873.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
18RS21]
gi|77175819|gb|EAO78598.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
H36B]
Length = 224
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 110/223 (49%), Gaps = 18/223 (8%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
NK +F + A+ A R +SV +VAV+K V+ + + G EN++ + +K
Sbjct: 7 NKTAIF-DNVSKLALKAGRAHESVHIVAVTKYVNCQTTEALIRTGVNHIGENRVDKFLEK 65
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RFLPVY 123
+ L+ E + IGSLQ KV ++++ D + K A+ E+ K++ + + +
Sbjct: 66 YQALKDE-KLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAA----EIQKRAQKPIKCF 120
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--- 180
+QVN E K G Q D + L + ++ + G+M + P + + E
Sbjct: 121 LQVNISREDSKHGFTIEQIDDALNLISRYDKIELIGIMTMAPLKATKEEISSIFEETESL 180
Query: 181 -----ARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
AR + T+LSMGM+RD+++AI +G+T VRIG+ F
Sbjct: 181 RKRLQARNIERMPFTELSMGMSRDYDIAIQNGSTFVRIGTSFF 223
>gi|306824768|ref|ZP_07458112.1| YggS family pyridoxal phosphate enzyme [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|304432979|gb|EFM35951.1| YggS family pyridoxal phosphate enzyme [Streptococcus sp. oral
taxon 071 str. 73H25AP]
Length = 223
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 111/231 (48%), Gaps = 25/231 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L ++ Q+I +++ A R D+VS++AV+K VD + L G EN++ E
Sbjct: 1 MNLKKNTELVFQQIADASQKANRNLDAVSVIAVTKYVDVQTAEALLPLGIHHIGENRVDE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
+K+ L K++ V IG+LQ KV E++ D + K L+ E+ K++
Sbjct: 61 FLEKYQAL-KDYPVTWHLIGTLQRRKVKEVIPYVDYFHALDSLK----LAQEIQKRTDHV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ ++QVN E K G + + + + Q+ GLM + P L E
Sbjct: 116 IKCFLQVNISGEESKHGFSKEELLELLPELAKLDQIEYVGLMTMAPFEAGSDE----LKE 171
Query: 180 IARECK---------------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
I ++ + +T+LSMGM+RDF+ AI G+T VRIG+ F
Sbjct: 172 IFKDTQALQAEIREKQIPNMPMTELSMGMSRDFKEAIQFGSTFVRIGTAFF 222
>gi|66357680|ref|XP_626018.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|46227312|gb|EAK88262.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 245
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 105/211 (49%), Gaps = 27/211 (12%)
Query: 30 LVAVSKMVDSKKIRVALS-CGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNK 86
L+ VSK + I++ Q IF EN +QE K + +P +W FIG LQSNK
Sbjct: 37 LLVVSKYQSEENIKLLHEKTDQKIFGENYVQELMEKSRNLPKSIKW----HFIGHLQSNK 92
Query: 87 VSEIVSL--FDVIETVSREKTASLLSLEMIKQSR-FLPVYIQVNTGYEIQKSGIMPNQTK 143
V ++S+ +VIETV K A +L+ E Q R L V IQV T E+ KSG ++
Sbjct: 93 VKTLLSIDNLEVIETVDSIKLAQVLNKECQLQGRSVLKVMIQVKTSNEVNKSGAQISEAI 152
Query: 144 D-FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL----LSEIARECKLTK---------- 188
+ F + + L +GLM + + N + L I E K++K
Sbjct: 153 NIFEYIISECRNLKFQGLMTMGDSDVNLTSECFNKMVNLRNIINE-KISKNGNYDQSIEC 211
Query: 189 -LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMG TRD E+AI + VRIGS IFG++
Sbjct: 212 RLSMGTTRDMEIAIKNHTNEVRIGSAIFGDK 242
>gi|195395082|ref|XP_002056165.1| GJ10370 [Drosophila virilis]
gi|194142874|gb|EDW59277.1| GJ10370 [Drosophila virilis]
Length = 254
Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 108/226 (47%), Gaps = 28/226 (12%)
Query: 20 LAKRPKDSVS----LVAVSKMVDSKKIRVALSCGQVIFAENKLQE-AKKKWIP--LRKEW 72
L RPK+ + LVAVSK + + A GQ F EN +QE +K P L +
Sbjct: 26 LQSRPKEINAPKPLLVAVSKTKPVECVIAAYKAGQRHFGENYVQELVEKSQHPDILAQCP 85
Query: 73 DVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIK----QSRFLPVYIQV 126
D++ IG LQSNK++ ++ L +++TV EK A+ + K S L V +Q+
Sbjct: 86 DIKWHLIGHLQSNKINHVLKLPNLHMVQTVDSEKLANKIDAAWAKLQPTPSEPLRVLVQI 145
Query: 127 NTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMG-----NPKPHFYLLSEI 180
NT E KSGI + F + L G+M I A G P P F L +
Sbjct: 146 NTSGEDVKSGIDASAAPSLFKYISANLKHLQPVGIMTIG-AYGFDYSNGPNPDFVALMQA 204
Query: 181 ARE-CKLTKL-------SMGMTRDFELAIASGATSVRIGSGIFGER 218
R C+ + SMGM+ D++ AI G+T VR+G+ IFG R
Sbjct: 205 HRAICEANDMPPDALQVSMGMSNDYDKAIEMGSTIVRVGTAIFGHR 250
>gi|70726728|ref|YP_253642.1| hypothetical protein SH1727 [Staphylococcus haemolyticus JCSC1435]
gi|68447452|dbj|BAE05036.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 222
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 28/206 (13%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNK 86
+++AV+K V + + A G F EN+L+ KK +P DV + FIGSLQS K
Sbjct: 28 NVIAVTKYVTIDRAKEAYDVGLRHFGENRLEGFLEKKSALP----NDVTMHFIGSLQSRK 83
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V E+++ D + + R A ++ + + +IQVN E K GI N+ F+
Sbjct: 84 VKEVINEIDYLHALDRLSLAKEINK---RADHEIACFIQVNVSGEESKHGIALNEVNHFI 140
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK---------------LSM 191
+Q ++ + GLM + P + + ++ ++ ++ + LSM
Sbjct: 141 EQIQQYDKIKIVGLMTMAPYTEDTA----YIRQLFKQLRVKRDEIKDLNLDYAPCHYLSM 196
Query: 192 GMTRDFELAIASGATSVRIGSGIFGE 217
GM+ D+ +A+ GA+ +RIG+ + GE
Sbjct: 197 GMSNDYAIAVEEGASFIRIGTKLVGE 222
>gi|229019103|ref|ZP_04175938.1| hypothetical protein bcere0030_36140 [Bacillus cereus AH1273]
gi|229025347|ref|ZP_04181765.1| hypothetical protein bcere0029_36480 [Bacillus cereus AH1272]
gi|228735932|gb|EEL86509.1| hypothetical protein bcere0029_36480 [Bacillus cereus AH1272]
gi|228742203|gb|EEL92368.1| hypothetical protein bcere0030_36140 [Bacillus cereus AH1273]
Length = 224
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQGNLAGVNEAIKESCARAGRSMKDIKLVAVTKTVGIEKTSEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
+K+ + V FIGSLQ+ KV EI++ D + ++ R LSL Q R
Sbjct: 61 FSQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDR------LSLAKEIQKRAD 112
Query: 120 --LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP----- 172
+ +IQV T E K G+ +T F+ ++ ++ V GLM + P G +
Sbjct: 113 KKVKCFIQVKTSSEESKQGLAIEETISFIQSLQELDKIEVVGLMTMAPFTGEEEEIRRCF 172
Query: 173 -HFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+L +E +L +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 173 KELRMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTVLVG 222
>gi|322699267|gb|EFY91030.1| alanine racemase family protein (ISS) [Metarhizium acridum CQMa
102]
Length = 287
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 110/227 (48%), Gaps = 41/227 (18%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQV-----IFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
V LVAVSK+ K + L+ Q F EN QE +K L K VQ FIG L
Sbjct: 62 VRLVAVSKL---KPVNDILALHQAPASHRHFGENYTQELTQKAQLLPK--TVQWHFIGGL 116
Query: 83 QSNK---VSEIVSLFDVIETVSREKTASLLSLE---MIKQSRFLP---VYIQVNTGYEIQ 133
QS +++I +LF + +V K A+LL+ ++ LP V++QVNT E
Sbjct: 117 QSGHCKTLAKIPNLF-CVSSVDTLKKANLLNTARGALLASDPSLPKLSVHVQVNTSGEEA 175
Query: 134 KSGIMPNQTKDFVILCRQKY----QLNVEGLMCI-------PPAMGNPKPHFYLLSE--- 179
KSG P K+ V LCR+ L++ GLM I N F L E
Sbjct: 176 KSGCAPG--KETVALCREIIGNCPNLHLLGLMTIGAIARSKATTAENENEDFIALKEQRD 233
Query: 180 -IARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ARE L +LSMGM+ DFE A+ G+ VR+GS IFG RP +
Sbjct: 234 LVARELALDHGRLELSMGMSEDFEGAVVLGSGEVRVGSTIFGTRPAK 280
>gi|227548919|ref|ZP_03978968.1| alanine racemase [Corynebacterium lipophiloflavum DSM 44291]
gi|227079008|gb|EEI16971.1| alanine racemase [Corynebacterium lipophiloflavum DSM 44291]
Length = 241
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 103/234 (44%), Gaps = 18/234 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS----CGQVIFAENKL 58
L LQ +++I + A RP SV L+ VSK I VAL G + EN+
Sbjct: 7 LAANLQRVREQIGEAVEAAGRPAGSVRLIPVSKFHPVTDI-VALGELGELGVDLVGENRE 65
Query: 59 QEAKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM---- 113
QEA+ K L + V++ IG +QS K + + + +V K AS L M
Sbjct: 66 QEARAKAEELAQAGSAVRIAMIGQIQSKKANAVARWAAEVHSVDSVKLASGLDRGMELAL 125
Query: 114 ---IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
+ + L +QV+ + + G+ + L + GLM +PP +
Sbjct: 126 ERGDRTTTLLRCLVQVSDDGDTARGGVAYGGLDEVADAIESAQHLELGGLMVVPPLGADE 185
Query: 171 KPHFYLLSEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F E A R + LS GM+ DFE AIA G+ VR+G+G+FG RP
Sbjct: 186 TAVFSRARERADALGQRFGRPMDLSAGMSGDFEKAIACGSDIVRVGTGVFGARP 239
>gi|158338463|ref|YP_001519640.1| hypothetical protein AM1_5365 [Acaryochloris marina MBIC11017]
gi|158308704|gb|ABW30321.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
Length = 228
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 15/206 (7%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SV L+AVSK + + IR A G F E+++QEA +K L+ ++ IG LQSNK
Sbjct: 23 SVRLIAVSKYMPAALIREAYDAGLRDFGESRVQEAIQKQAELQDLSELTWHLIGHLQSNK 82
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP-VYIQVNTGYEIQKSGIMPNQTKDF 145
V FD I +V A L+ +++ + P + +QV + K G K
Sbjct: 83 AKLAVRHFDWIHSVDSLALAQRLN-RLVESEQHSPQLCLQVKPLPDPDKFGWTFAGLKAD 141
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPH----FYLLSEIAREC--------KLTKLSMGM 193
+ + L+ GLM I P MG F+ ++A++ L +LSMGM
Sbjct: 142 LPALKACAHLHWRGLMTILP-MGLSSHEILNAFHETQQLAQDITQQFPEDFTLHELSMGM 200
Query: 194 TRDFELAIASGATSVRIGSGIFGERP 219
+ D++LA+ +GAT VR+G +FG+RP
Sbjct: 201 SNDYQLAVQAGATMVRVGRRLFGDRP 226
>gi|157372264|ref|YP_001480253.1| alanine racemase domain-containing protein [Serratia proteamaculans
568]
gi|157324028|gb|ABV43125.1| alanine racemase domain protein [Serratia proteamaculans 568]
Length = 235
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 106/229 (46%), Gaps = 13/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + +I +A R + V+L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDVRNRIAAAAQGCARAPEEVTLLAVSKTKPVAAIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + + FIG LQSNK + F TV R + AS L+ +
Sbjct: 63 VDKVQHFAAQPEGATLDWHFIGPLQSNKSRLVAENFAWCHTVDRLRIASRLNEQRPADMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQ+N E KSGI+ + L + GLM IP + + +
Sbjct: 123 PLNVLIQINISDEQSKSGIVLAELPALAEAVAALPNLRLRGLMAIPAPQEDYQSQLAVFG 182
Query: 179 EIAREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ R+ ++ LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 183 QM-RDAFLALQQQYPQVDTLSMGMTDDMTAAIAAGSTMVRIGTAIFGAR 230
>gi|283456835|ref|YP_003361399.1| hypothetical protein BDP_2003 [Bifidobacterium dentium Bd1]
gi|283103469|gb|ADB10575.1| Conserved hypothetical protein with alanine racemase, N-terminal
domain [Bifidobacterium dentium Bd1]
Length = 280
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 98/238 (41%), Gaps = 39/238 (16%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE--------- 71
A R SV L+A +K D +I A+ G + EN+ QE K L K+
Sbjct: 41 AGREVGSVKLLAATKTRDVGEIMTAIDAGVRMIGENRPQEVMAKAEGLLKQCAQRGFTLG 100
Query: 72 ------------------WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
+ IG LQSNK+ +++ + + IE+V A +S
Sbjct: 101 AATAEAVAGGAVAGDADGTHIPFHLIGQLQSNKIGKVLPVINTIESVDSVDLAEKISRRA 160
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP- 172
+ + + V ++VN E KSG P L ++GLM I + N
Sbjct: 161 VARGITVGVLLEVNESGEASKSGCDPAHAIRIAQKIGTLDGLELQGLMTIGAHVDNETTI 220
Query: 173 -----------HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L S+ + +LSMGMT D ELAIA G+T VR+G+ IFGER
Sbjct: 221 RKCFAHLRKTRDLILASKTPGTERCLELSMGMTGDMELAIAEGSTIVRVGTAIFGERA 278
>gi|229168641|ref|ZP_04296363.1| hypothetical protein bcere0007_35980 [Bacillus cereus AH621]
gi|228614797|gb|EEK71900.1| hypothetical protein bcere0007_35980 [Bacillus cereus AH621]
Length = 224
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 111/234 (47%), Gaps = 30/234 (12%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK--- 57
M++ L + I+ S + A R + LVAV+K V +K + G + EN+
Sbjct: 1 MTVQGNLVDVNEAIKESCVRAGRSMKDIKLVAVTKTVGIEKTSEVIETGIIDLGENRNEG 60
Query: 58 -LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
LQ K ++ + W FIGSLQ+ KV EI++ D + ++ R LSL Q
Sbjct: 61 FLQ--KYEYFSSKVNW----HFIGSLQTRKVKEIINEIDYLHSLDR------LSLAKEIQ 108
Query: 117 SRF---LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP- 172
R + +IQV T E K G+ +T F+ ++ ++ V GLM + P G +
Sbjct: 109 KRADKKVKCFIQVKTSSEESKQGLAIEETISFIQSLQELDKIEVVGLMTMAPFTGEEEEI 168
Query: 173 -----HFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+L +E +L +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 169 RRCFKELRMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTVLVG 222
>gi|171742035|ref|ZP_02917842.1| hypothetical protein BIFDEN_01139 [Bifidobacterium dentium ATCC
27678]
gi|171277649|gb|EDT45310.1| hypothetical protein BIFDEN_01139 [Bifidobacterium dentium ATCC
27678]
Length = 319
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 98/238 (41%), Gaps = 39/238 (16%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE--------- 71
A R SV L+A +K D +I A+ G + EN+ QE K L K+
Sbjct: 80 AGREVGSVKLLAATKTRDVGEIMTAIDAGVRMIGENRPQEVMAKAEGLLKQCAQRGFTLG 139
Query: 72 ------------------WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
+ IG LQSNK+ +++ + + IE+V A +S
Sbjct: 140 AATAEAVAGGAVAGDADGTHIPFHLIGQLQSNKIGKVLPVINTIESVDSVDLAEKISRRA 199
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP- 172
+ + + V ++VN E KSG P L ++GLM I + N
Sbjct: 200 VARGITVGVLLEVNESGEASKSGCDPAHAIRIAQKIGTLDGLELQGLMTIGAHVDNETTI 259
Query: 173 -----------HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L S+ + +LSMGMT D ELAIA G+T VR+G+ IFGER
Sbjct: 260 RKCFAHLRKTRDLILASKTPGTERCLELSMGMTGDMELAIAEGSTIVRVGTAIFGERA 317
>gi|118474783|ref|YP_892034.1| hypothetical protein CFF8240_0859 [Campylobacter fetus subsp. fetus
82-40]
gi|118414009|gb|ABK82429.1| conserved hypothetical protein [Campylobacter fetus subsp. fetus
82-40]
Length = 205
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 103/206 (50%), Gaps = 30/206 (14%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
S L+AVSK V ++ + GQ+ F EN++QE K+K + K+ ++ FIG LQ+NK
Sbjct: 12 STKLIAVSKNVTENEVLELYNQGQIDFGENRVQELKRK-KEILKDLNLNWHFIGRLQANK 70
Query: 87 VSEIVSL----------FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG 136
++ +++L F + E V + + LP +Q+N+ +E K G
Sbjct: 71 INHLLALHPNLWQSCESFSMAEAVDK------------RLDYILPTLLQINSAHEESKQG 118
Query: 137 IMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPK------PHFYLLSEIARECKLTKL 189
+ PN ++F+ + + LN+ G+M I + K Y + E +E
Sbjct: 119 VDPNAACEEFLRIKQSCKNLNLIGVMSIGAHSDDIKEIQKSFESTYKIYENLQEHGAKIC 178
Query: 190 SMGMTRDFELAIASGATSVRIGSGIF 215
SMGM+ D+ELAI G+ +R+G+ ++
Sbjct: 179 SMGMSSDYELAIKCGSNMIRLGTILY 204
>gi|313637029|gb|EFS02599.1| pyridoxal phosphate enzyme, YggS family [Listeria seeligeri FSL
S4-171]
Length = 229
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 15/228 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ L+ ++IE + + R K V+LVAV+K +D+ ++ F EN+
Sbjct: 1 MTKQANLEKVTKQIELACTESNRDKTDVTLVAVTKTIDATEMTELYDLRIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L + D+ +IGSLQ+ KV +++ D + ++ R ASL + ++ +
Sbjct: 61 FLEKTTQLANKDDICWHYIGSLQTRKVKDVLPKIDYLHSLDR---ASLAKEIEKRATKLV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-KPH--FYLL 177
++Q+N E K G + F+ KY + + GLM + P + + H F+ L
Sbjct: 118 KCFLQINISGEETKHGFSKEEALSFLQEADFKY-IEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ +E T+LSMGMT DF +AI GAT +R+G + +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDFGIAITEGATFIRVGRALVSD 224
>gi|323464725|gb|ADX76878.1| conserved hypothetical protein [Staphylococcus pseudintermedius
ED99]
Length = 224
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 103/233 (44%), Gaps = 29/233 (12%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L + I + + P ++AV+K V + + A G F EN+++
Sbjct: 1 MSVKTNLAEIEHTITENVTFREDPTRP-HVIAVTKYVTINRAKEAYEAGIRHFGENRIEG 59
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
KK +P DV + FIGSLQS KV E+++ D + + R+ A +S +
Sbjct: 60 FLEKKAALP----DDVHMHFIGSLQSRKVKEVINDIDYLHALDRQSLAKEISK---RAEH 112
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+ ++QVN E K GI + F+ + V GLM + P N L
Sbjct: 113 EIKCFVQVNVSGEASKHGIALEEVIPFIEKLVDYDHIRVVGLMTMAPYTDNEAE----LE 168
Query: 179 EIARECK---------------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+I + K T+LSMGM+ D+ +A GAT VRIG+ + G
Sbjct: 169 DIFEKLKNKRDEVQSLNLTYAPCTELSMGMSNDYHIATKKGATFVRIGTRLVG 221
>gi|221194697|ref|ZP_03567754.1| pyridoxal phosphate enzyme, YggS family [Atopobium rimae ATCC
49626]
gi|221185601|gb|EEE17991.1| pyridoxal phosphate enzyme, YggS family [Atopobium rimae ATCC
49626]
Length = 241
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 103/215 (47%), Gaps = 15/215 (6%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW- 72
+ +A + R + L+AVSK V+ + + A G F EN+ QE +K I K W
Sbjct: 18 VSEAAKCSGRDASEIELIAVSKTVEPEAVHDAYQAGYRTFGENRPQELGRK-IEALKTWP 76
Query: 73 ---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
DV+ IG+LQ+NK++ ++ +I ++S E A +S+ + V +++N
Sbjct: 77 DMADVRFDMIGNLQTNKINHVIGKARLIHSISSEHLARAVSMRAEAKDCICQVLLEINVS 136
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIARECK- 185
E KSG P + + +++ GLM + P G+ + F L E+
Sbjct: 137 GEESKSGFSPQEVQRAADNLMSLSGISICGLMTMAP-QGDAYRARKTFAGLRELQGTLSK 195
Query: 186 -----LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L+ LS GM+ DF LA+ G+T VR+G +F
Sbjct: 196 QMGLPLSVLSCGMSDDFPLAVREGSTMVRLGRLVF 230
>gi|227545702|ref|ZP_03975751.1| possible TIM-barrel fold protein [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|227213818|gb|EEI81657.1| possible TIM-barrel fold protein [Bifidobacterium longum subsp.
infantis ATCC 55813]
Length = 292
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 101/242 (41%), Gaps = 34/242 (14%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK- 70
+I + +A R SV L+A +K D +I A+ G EN+ QE K L +
Sbjct: 49 DRIAEAESVAGREAGSVHLLAATKTRDVGEILAAIDAGVHRIGENRPQEIIVKAPGLARL 108
Query: 71 ---------------------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL 109
+ IG LQ+NK+S+++ + D IE+V + A +
Sbjct: 109 LAERGYSLGVVETEGGAAADAAHHIPFHLIGQLQANKISKVLPVVDTIESVDSIELAEKI 168
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
+ + + V ++VN E KSG P+ D L ++GLM I + +
Sbjct: 169 ARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQGLMTIGAHVDD 228
Query: 170 PK------PHF------YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ H L S T+LSMGMT D AI G+T VR+G+ IFGE
Sbjct: 229 ERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMTYAIEEGSTIVRVGTAIFGE 288
Query: 218 RP 219
R
Sbjct: 289 RA 290
>gi|229086465|ref|ZP_04218637.1| hypothetical protein bcere0022_30490 [Bacillus cereus Rock3-44]
gi|228696782|gb|EEL49595.1| hypothetical protein bcere0022_30490 [Bacillus cereus Rock3-44]
Length = 222
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 108/223 (48%), Gaps = 20/223 (8%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L ++I+ + A+R + + LVAV+K V +K + G EN+ + +K+
Sbjct: 5 LAFVNEEIKKACERAERLVEEIKLVAVTKTVGIEKTNEVIEAGLTDLGENRNEGFLEKYE 64
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ V FIGSLQ+ KV EI++ D + ++ R A + KQ R ++QV
Sbjct: 65 HFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRISLAKEIQKRATKQIR---CFVQV 119
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE 183
T E K GI +T F+ ++ ++ V GLM + P G + F L + ++
Sbjct: 120 KTSSEESKQGIAAEETIAFIRALQEFDKIEVVGLMTMAPFTGKEAEIRHCFKTLRSLQKQ 179
Query: 184 ----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
CK +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 180 VQELGLSYAPCK--ELSMGMSNDYTIAIEEGATYIRLGTILVG 220
>gi|284929616|ref|YP_003422138.1| YggS family protein [cyanobacterium UCYN-A]
gi|284810060|gb|ADB95757.1| pyridoxal phosphate enzyme, YggS family [cyanobacterium UCYN-A]
Length = 218
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 102/200 (51%), Gaps = 13/200 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SVSL+ VSK + I+ A + G FAEN+LQEA +K L++ D+ FIG LQ+NK
Sbjct: 17 SVSLIVVSKQQSVESIKEAYNSGIRDFAENRLQEALEKQEELKEYDDISWHFIGHLQTNK 76
Query: 87 VSEIVSLFDVIETVSREKTASLLS--LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
+++ F+ I +V + A L+ +E I S + + +QV + K G +P +
Sbjct: 77 AKKVLENFNWIHSVDSLRLAQHLNQIIEKISASPY--ICLQVKAMPDPDKYGWLPETLWE 134
Query: 145 FVILCRQKYQLNVEGLMCIPP--AMGNPKPH-FYLLSEIARECK------LTKLSMGMTR 195
+ + L + GLM I P N H F + +A++ L +LSMGM+
Sbjct: 135 DLHELEKCKNLMIRGLMTILPLNLSTNESLHAFQKVQTLAQDINEKSSLFLKELSMGMSN 194
Query: 196 DFELAIASGATSVRIGSGIF 215
D+ LAI T +R+G IF
Sbjct: 195 DYLLAIQKNTTMIRLGRTIF 214
>gi|255027924|ref|ZP_05299910.1| pyridoxal phosphate enzyme, YggS family protein [Listeria
monocytogenes FSL J2-003]
Length = 229
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 113/229 (49%), Gaps = 17/229 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R V+LVAV+K +D+ I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQAKEVTLVAVTKTIDAAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRF 119
++K + L + D+ +IGSLQ+ KV +++ D + ++ R S L+ E+ K+ ++
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPQIDYLHSLDR----SSLAKEIEKRATKP 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-KPH--FYL 176
+ ++QVN E K G + F+ + + + GLM + P + + H F+
Sbjct: 117 VKCFLQVNISGEESKHGFSKEEALSFLQEANFTF-IEIVGLMTMAPITNSDIELHHVFHE 175
Query: 177 LSEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
L ++ +E T+LSMGMT D+ +AI GAT +R+G + +
Sbjct: 176 LKQLQQEIHALQLKNIPCTELSMGMTNDYGIAITEGATFIRVGRALVND 224
>gi|260912321|ref|ZP_05918872.1| K+ uptake protein [Prevotella sp. oral taxon 472 str. F0295]
gi|260633622|gb|EEX51761.1| K+ uptake protein [Prevotella sp. oral taxon 472 str. F0295]
Length = 224
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 16/206 (7%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+V LVAVSK ++++ A GQ IF E+ QE +K L K D+ FIG LQSNK
Sbjct: 19 NVKLVAVSKFHPNEELMAAYEQGQRIFGESHEQELSRKAAELPK--DIAWHFIGHLQSNK 76
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V I D+IE V K ++ + + R + V ++++ E K G + ++ +
Sbjct: 77 VKYIAPYIDMIEAVDSLKLLREINKQAERCGRVIDVLLELHVAQEASKFGFTLDACRELL 136
Query: 147 I--LCRQKYQLNVEGLMCIPPAMGNPK-------PHFYLLSEI-----ARECKLTKLSMG 192
R+ + + GLM + + + + + E+ A + + S G
Sbjct: 137 AGGEWRELSHVRICGLMTMASNVDDEQQIRTEMTTTWRFFDEMKSLHFAHDDAFKERSWG 196
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D+ +A+ G+T VR+G+ IFGER
Sbjct: 197 MSHDYPIALQCGSTMVRVGTNIFGER 222
>gi|229013085|ref|ZP_04170250.1| hypothetical protein bmyco0001_35230 [Bacillus mycoides DSM 2048]
gi|229061506|ref|ZP_04198850.1| hypothetical protein bcere0026_35910 [Bacillus cereus AH603]
gi|229134710|ref|ZP_04263519.1| hypothetical protein bcere0014_36190 [Bacillus cereus BDRD-ST196]
gi|228648756|gb|EEL04782.1| hypothetical protein bcere0014_36190 [Bacillus cereus BDRD-ST196]
gi|228717740|gb|EEL69390.1| hypothetical protein bcere0026_35910 [Bacillus cereus AH603]
gi|228748339|gb|EEL98199.1| hypothetical protein bmyco0001_35230 [Bacillus mycoides DSM 2048]
Length = 224
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S + A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQGNLADVNEVIKESCVRAGRSMKDIKLVAVTKTVGIEKTSEVIETGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
+K+ + V FIGSLQ+ KV EI++ D + ++ R LSL Q R
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDR------LSLAKEIQKRAD 112
Query: 120 --LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP----- 172
+ +IQV T E K G+ +T F+ ++ ++ V GLM + P G +
Sbjct: 113 KKVKCFIQVKTSSEESKQGLAIEETISFIQSLQELDKIEVVGLMTMAPFTGEEEEIRRCF 172
Query: 173 -HFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+L +E +L +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 173 KELRMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTVLVG 222
>gi|228475001|ref|ZP_04059729.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus hominis
SK119]
gi|228270986|gb|EEK12374.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus hominis
SK119]
Length = 224
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 22/207 (10%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSL 82
K + +++AV+K V + + A G F EN+++ KK+ +P DV + FIGSL
Sbjct: 24 KTAPNVIAVTKYVTIDRAKEAYDAGLRHFGENRVEGFLEKKQALP----KDVTMHFIGSL 79
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
QS KV +++ D + + R A ++ + + + +IQVN E K GI ++
Sbjct: 80 QSRKVKYVINDIDYLHALDRLSLAKEINK---RATHTISCFIQVNVSGEETKHGIALSEV 136
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR----ECKLTKL--------S 190
DF+ + + + GLM + P + K + + L + R E K KL S
Sbjct: 137 NDFIEQIKAFDNIKIVGLMTMAP-YTDDKDYIHQLFKQLRLKRDEIKNLKLNYAPCEYLS 195
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGE 217
MGM+ D+ +A+ GAT +RIG+ + GE
Sbjct: 196 MGMSNDYTIAVEEGATFIRIGTKLVGE 222
>gi|302335875|ref|YP_003801082.1| alanine racemase domain protein [Olsenella uli DSM 7084]
gi|301319715|gb|ADK68202.1| alanine racemase domain protein [Olsenella uli DSM 7084]
Length = 243
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 107/224 (47%), Gaps = 14/224 (6%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
G + ++ +++ + + + R D V L+ VSK V ++ +A G F EN+ QE K+
Sbjct: 15 GRRAEIL-ERLAAACVRSGRRADDVLLLGVSKTVGIDEVALAWEAGYRAFGENRPQELKR 73
Query: 64 KWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K K DV+ IG+LQ+NKV+ ++ +I +VS A +S + +
Sbjct: 74 KLSACATSPKLADVRFDMIGNLQTNKVNMVIGNVSLIHSVSSTHLAEAISKRSVARGIRS 133
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V ++VN E KSG P+ + ++V GLM + P +P + F L
Sbjct: 134 RVLLEVNVSGEESKSGFTPDGATTALDALLSLPGIDVRGLMTMAP-RDDPDAARRTFSGL 192
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ + L LS GM+ DFE A+ G+T VR+G +F
Sbjct: 193 RELRDALRGSHGLPLDVLSCGMSDDFESAVEEGSTLVRLGRTVF 236
>gi|47097620|ref|ZP_00235144.1| conserved hypothetical protein TIGR00044 [Listeria monocytogenes
str. 1/2a F6854]
gi|254899271|ref|ZP_05259195.1| pyridoxal phosphate enzyme, YggS family protein [Listeria
monocytogenes J0161]
gi|254912590|ref|ZP_05262602.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254936916|ref|ZP_05268613.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|47014007|gb|EAL05016.1| conserved hypothetical protein TIGR00044 [Listeria monocytogenes
str. 1/2a F6854]
gi|258609516|gb|EEW22124.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|293590581|gb|EFF98915.1| conserved hypothetical protein [Listeria monocytogenes J2818]
Length = 229
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 113/229 (49%), Gaps = 17/229 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R V+LVAV+K +D+ I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQAKEVTLVAVTKTIDAAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRF 119
++K + L + D+ +IGSLQ+ KV +++ D + ++ R S L+ E+ K+ ++
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPQIDYLHSLDR----SSLAKEIEKRATKP 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-KPH--FYL 176
+ ++QVN E K G + F+ + + + GLM + P + + H F+
Sbjct: 117 VKCFLQVNISGEESKHGFSKEEALSFLQEANFTF-IEIVGLMTMAPITNSDIELHHVFHE 175
Query: 177 LSEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
L ++ +E T+LSMGMT D+ +AI GAT +R+G + +
Sbjct: 176 LKQLQQEIHALQLKNIPCTELSMGMTNDYGIAITEGATFIRVGRALVSD 224
>gi|226500772|ref|NP_001152502.1| proline synthetase-like protein [Zea mays]
gi|195656949|gb|ACG47942.1| proline synthetase-like protein [Zea mays]
Length = 245
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 94/196 (47%), Gaps = 26/196 (13%)
Query: 42 IRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL---FDV 96
+R G F+EN +QE K +P W FIG LQSNKV +++ D+
Sbjct: 49 LRQLYDAGHRCFSENYVQEFVTKAPQLPQDTRW----HFIGHLQSNKVKPLLAAVPNLDM 104
Query: 97 IETVSREKTASLLSLEMIKQSR-FLPVYIQVNTGYEIQKSGIMPNQTKDFV----ILCRQ 151
+E V EK A+ L + R L V +QVNT E KSGI P++ D + C
Sbjct: 105 VEGVDNEKIANHLDRAVNSLGRQPLKVLVQVNTSGEESKSGIDPSKCVDLAKHVKLACPH 164
Query: 152 KYQLNVEGLMCIPPAMGNPKP-HFYLLSEIARE-CKLT-------KLSMGMTRDFELAIA 202
L GLM I + P +F L E CK +LSMGM+ DFE AI
Sbjct: 165 ---LIFSGLMTIGMKDYSSTPENFKALVNCKLEVCKALDIPTEQFELSMGMSGDFEQAIE 221
Query: 203 SGATSVRIGSGIFGER 218
G+T+VRIGS IFG R
Sbjct: 222 MGSTNVRIGSTIFGPR 237
>gi|325688222|gb|EGD30241.1| cell division protein YlmE [Streptococcus sanguinis SK72]
Length = 223
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 116/229 (50%), Gaps = 21/229 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
K+ L+ E ++ IGSLQ KV ++++ D + K A E+ K++
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAK----EIDKRAEHV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPH---F 174
+ ++QVN E K G + + + V+L + NV+ GLM + P + + F
Sbjct: 116 IKCFLQVNISKEESKHGFLIEELE--VVLPELEKLENVQIVGLMTMAPFEASHEELNQIF 173
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+
Sbjct: 174 EKAHQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFL 222
>gi|324990667|gb|EGC22603.1| cell division protein YlmE [Streptococcus sanguinis SK353]
Length = 223
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 114/228 (50%), Gaps = 19/228 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQDNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ E ++ IGSLQ KV ++++ D + K A + + +
Sbjct: 61 FLDKYHALKDE-NLIWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDK---RAEHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPH---FY 175
++QVN E K G + + + V+L + NV+ GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFLIEELE--VVLPELEKLENVQIVGLMTMAPFEASHEELNQIFE 174
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 175 KAHQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|296453405|ref|YP_003660548.1| alanine racemase domain-containing protein [Bifidobacterium longum
subsp. longum JDM301]
gi|296182836|gb|ADG99717.1| alanine racemase domain protein [Bifidobacterium longum subsp.
longum JDM301]
Length = 275
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 100/242 (41%), Gaps = 34/242 (14%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK- 70
+I S +A R SV L+A +K D +I A+ G EN+ QE K L +
Sbjct: 32 DRIAESESVAGREAGSVHLLAATKTRDVGEILAAIDAGVHRIGENRPQEIVVKAPGLARL 91
Query: 71 ---------------------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL 109
+ IG LQ+NK+ +++ D IE+V + A +
Sbjct: 92 LAERGYSLGVVETEGGAAADAAHHIPFHLIGQLQANKIGKVLPAVDTIESVDSIELAEKI 151
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
+ + + V ++VN E KSG P+ D L+++GLM I + +
Sbjct: 152 ARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLHLQGLMTIGAHVDD 211
Query: 170 PK------PHF------YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ H L S T+LSMGMT D AI G+T VR+G+ IFGE
Sbjct: 212 ERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMAYAIEEGSTIVRVGTAIFGE 271
Query: 218 RP 219
R
Sbjct: 272 RA 273
>gi|255729862|ref|XP_002549856.1| hypothetical protein CTRG_04153 [Candida tropicalis MYA-3404]
gi|240132925|gb|EER32482.1| hypothetical protein CTRG_04153 [Candida tropicalis MYA-3404]
Length = 276
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 107/213 (50%), Gaps = 25/213 (11%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQS 84
+V L+AVSK+ S I S G F EN +QE +K + +P D+ FIG LQS
Sbjct: 58 NVQLIAVSKLKPSSDIMALYSIGVRHFGENYVQELISKSQELP----QDINWHFIGGLQS 113
Query: 85 NK---VSEIVSLFDVIETVSREKTASLLSLEMIK-QSRFLPVYIQVNTGYEIQKSGIMP- 139
K +S+ V +ET+ K L+ K + VY+Q+NT E QKSG +
Sbjct: 114 GKCKDLSKHVKNLYSVETIDSFKKCKQLNNSRDKIDGDVINVYLQINTSEEEQKSGFLKI 173
Query: 140 ---NQTKDFVILCRQKYQLNVEGLMCIPP-----AMGNPKPHFYLLSEIAR--ECKLT-- 187
+T +++I K +L + GLM I + F L EI + + K
Sbjct: 174 EDIQETIEYLISDECK-KLKILGLMTIGSFNESVSSDGENKDFKKLVEIKKVLDEKYNLD 232
Query: 188 -KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+L+MGM+ DFE AI G+T+VR+G+ IFG RP
Sbjct: 233 LQLNMGMSNDFEQAIKQGSTNVRVGTTIFGARP 265
>gi|319892176|ref|YP_004149051.1| YggS [Staphylococcus pseudintermedius HKU10-03]
gi|317161872|gb|ADV05415.1| YggS [Staphylococcus pseudintermedius HKU10-03]
Length = 224
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 103/233 (44%), Gaps = 29/233 (12%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L + I + + P ++A++K V + + A G F EN+++
Sbjct: 1 MSVKTNLAEIEHTITENVTFREDPTRP-HVIAITKYVTINRAKEAYEAGIRHFGENRIEG 59
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
KK +P DV + FIGSLQS KV E+++ D + + R+ A +S +
Sbjct: 60 FLEKKAALP----DDVHMHFIGSLQSRKVKEVINDIDYLHALDRQSLAKEISK---RAEH 112
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+ ++QVN E K GI + F+ + V GLM + P N L
Sbjct: 113 EIKCFVQVNVSGEASKHGIALEEVIPFIEKLVDYDHIRVVGLMTMAPYTDNEAE----LE 168
Query: 179 EIARECK---------------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+I + K T+LSMGM+ D+ +A GAT VRIG+ + G
Sbjct: 169 DIFEKLKNKRDEVQSLNLTYAPCTELSMGMSNDYHIATKKGATFVRIGTRLVG 221
>gi|319947485|ref|ZP_08021717.1| cell division protein YlmE [Streptococcus australis ATCC 700641]
gi|319746425|gb|EFV98686.1| cell division protein YlmE [Streptococcus australis ATCC 700641]
Length = 222
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 106/222 (47%), Gaps = 17/222 (7%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
NK ++F Q + A+ D ++++AV+K V + + + G EN++ + +K
Sbjct: 6 NKERIFSQVAQ--AMETANRTDQMNVIAVTKYVGIDQAKALVDTGVRHIGENRVDKFLEK 63
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ L+ E + IGSLQ KV E+++ D + K A + + S + +I
Sbjct: 64 YQALKDEG-LTWHLIGSLQRRKVKEVINFVDYFHALDSMKLAQEIQK---RASHPIKCFI 119
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIA 181
QVN E K G P + + L + GLM + P + + F ++
Sbjct: 120 QVNISGEESKHGFAPEELDALLPEIEALDNLQIVGLMTMAPFEASQDELQAIFAATHQLQ 179
Query: 182 RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+E + T+LSMGM+RD+++AIA+GAT VRIG+ F
Sbjct: 180 KELQKKQLKNMPFTELSMGMSRDYDVAIANGATFVRIGTSFF 221
>gi|212535840|ref|XP_002148076.1| alanine racemase family protein, putative [Penicillium marneffei
ATCC 18224]
gi|210070475|gb|EEA24565.1| alanine racemase family protein, putative [Penicillium marneffei
ATCC 18224]
Length = 314
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 99/207 (47%), Gaps = 42/207 (20%)
Query: 50 QVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNK---VSEIVSLFDVIETVSREK 104
Q+ F EN QE K + +P +W FIG LQSNK ++ V +E+V EK
Sbjct: 103 QLHFGENYFQELLEKSRILPRGIKW----HFIGGLQSNKCVSLARDVRGLWAVESVDTEK 158
Query: 105 TASLL----------SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR---- 150
A LL +L ++++ L V++QVNT E KSG+ P T LCR
Sbjct: 159 KAKLLDKGWGERDISALSEEERTQKLRVFVQVNTSGEEAKSGVEPVATP---ALCRYIRE 215
Query: 151 QKYQLNVEGLMCI-----PPAMGNPKPHFYLLSEI-----------ARECKLTKLSMGMT 194
Q +L ++GLM I N F L E +E +LSMGM+
Sbjct: 216 QCPRLKLQGLMTIGAIARSKESTNENADFVSLIETREAIIKALGMSEQEADDFELSMGMS 275
Query: 195 RDFELAIASGATSVRIGSGIFGERPCQ 221
DFE AIA G+ VR+G+ IFGERP +
Sbjct: 276 SDFEGAIALGSDQVRVGTTIFGERPVK 302
>gi|67594591|ref|XP_665811.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54656651|gb|EAL35580.1| hypothetical protein Chro.50329 [Cryptosporidium hominis]
Length = 238
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 105/211 (49%), Gaps = 27/211 (12%)
Query: 30 LVAVSKMVDSKKIRVALS-CGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNK 86
L+ VSK + I++ Q IF EN +QE K + +P +W FIG LQSNK
Sbjct: 30 LLVVSKYQSEENIKLLHEKTDQKIFGENYVQELMEKSRNLPKSIKW----HFIGHLQSNK 85
Query: 87 VSEIVSL--FDVIETVSREKTASLLSLEMIKQSR-FLPVYIQVNTGYEIQKSGIMPNQTK 143
V ++S+ +VIETV K A +L+ E Q R L V IQV T E+ KSG ++
Sbjct: 86 VKTLLSIDNLEVIETVDSIKLAQVLNKECQLQGRSVLKVMIQVKTSNEVNKSGAKISEAL 145
Query: 144 D-FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL----LSEIARECKLTK---------- 188
+ F + + L +GLM + + N + L I E K++K
Sbjct: 146 NIFEYIISECRNLKFQGLMTMGDSDVNLTSECFNKMVNLRNIINE-KISKNGNYDQSIEC 204
Query: 189 -LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMG TRD E+AI + +RIGS IFG++
Sbjct: 205 RLSMGTTRDMEIAIKNHTNEIRIGSAIFGDK 235
>gi|315613573|ref|ZP_07888480.1| YggS family pyridoxal phosphate enzyme [Streptococcus sanguinis
ATCC 49296]
gi|315314264|gb|EFU62309.1| YggS family pyridoxal phosphate enzyme [Streptococcus sanguinis
ATCC 49296]
Length = 223
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 25/231 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L ++ Q+I +++ A R D+VS++AV+K VD + L G EN++ +
Sbjct: 1 MNLKKNTELVFQQIADASQEANRALDAVSVIAVTKYVDVQTAEALLPLGVRHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
+K+ L K++ V IG+LQ KV E++ D + K L+ E+ K++
Sbjct: 61 FLEKYQAL-KDYPVTWHLIGTLQRRKVKEVIPYVDYFHALDSLK----LAQEIQKRTDHV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ ++QVN E K G + + + + Q+ GLM + P + L E
Sbjct: 116 IKCFLQVNISGEESKHGFSKEELLELLPELAKLDQIEYVGLMTMAPFEADSDD----LKE 171
Query: 180 IARECK---------------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
I ++ + +T+LSMGM+RDF+ AI G+T VRIG+ F
Sbjct: 172 IFKDTQALQAEIREKQIPNIPMTELSMGMSRDFKEAIQFGSTFVRIGTAFF 222
>gi|213691153|ref|YP_002321739.1| alanine racemase domain protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|213522614|gb|ACJ51361.1| alanine racemase domain protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|320457211|dbj|BAJ67832.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 278
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 99/245 (40%), Gaps = 37/245 (15%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
+I + +A R SV L+A +K D +I A+ G EN+ QE K L K
Sbjct: 32 DRIAEAEAVAGRRSGSVRLLAATKTRDVGEILAAIDAGVRCIGENRPQEVTVKAPGLAKR 91
Query: 72 W-------------------------DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA 106
V IG LQ+NK+ +++ D IE+V + A
Sbjct: 92 LAERGYALGVVRDAASGDDALAGAGRHVPFHLIGQLQANKIGKVLPAVDTIESVDSIELA 151
Query: 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA 166
++ + + V ++VN E KSG P+ D L ++GLM I
Sbjct: 152 EKIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQGLMTIGAH 211
Query: 167 MGNPK------PHF------YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ + + H L S T+LSMGMT D AI G+T VR+G+ I
Sbjct: 212 VDDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMAYAIEEGSTIVRVGTAI 271
Query: 215 FGERP 219
FGER
Sbjct: 272 FGERA 276
>gi|16804070|ref|NP_465555.1| hypothetical protein lmo2031 [Listeria monocytogenes EGD-e]
gi|16411501|emb|CAD00109.1| lmo2031 [Listeria monocytogenes EGD-e]
Length = 229
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 17/229 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE++ + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIEHACEESNRQSEDVTLVAVTKTIDVTGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRF 119
+K + L + D+ +IGSLQ+ KV +++ D + ++ R S L+ E+ K+ ++
Sbjct: 61 FLEKTVELADKDDICWHYIGSLQTRKVKDVLPQIDYLHSLDR----SSLAKEIEKRATKP 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-KPH--FYL 176
+ ++QVN E K G + F+ + + + GLM + P + + H F+
Sbjct: 117 VKCFLQVNISGEESKHGFSKEEALSFLQEANFTF-IEIVGLMTMAPITNSDIELHHVFHE 175
Query: 177 LSEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
L ++ +E T+LSMGMT D+ +AI GAT +RIG + +
Sbjct: 176 LKQLQQEIHALQLKNIPCTELSMGMTNDYGIAITEGATFIRIGRALVND 224
>gi|152967138|ref|YP_001362922.1| alanine racemase domain protein [Kineococcus radiotolerans
SRS30216]
gi|151361655|gb|ABS04658.1| alanine racemase domain protein [Kineococcus radiotolerans
SRS30216]
Length = 238
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 11/204 (5%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+++LVAV+K + +R+ G EN+ QEA K L D+ FIG +Q+NK
Sbjct: 32 TLTLVAVTKFFPASDVRLLAGLGVRDAGENRDQEASAKAAELADLPDLHWHFIGQVQTNK 91
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------QKSGIMPN 140
V +V + +V R + A L R L ++QV+ + + G
Sbjct: 92 VRSVVRYAGSVHSVDRVRLADALGRAAAGAGRELGCFVQVDLAEALGLPADSGRGGAAGE 151
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK-----LTKLSMGMTR 195
+ L + GLM + P P F L+ A+ + +LS GM+
Sbjct: 152 EVLRVADAVAGADALRLRGLMAVAPLGVEPAAAFDALARTAQRVREHHPGALELSAGMSG 211
Query: 196 DFELAIASGATSVRIGSGIFGERP 219
D E A+A+GAT +R+GS I G RP
Sbjct: 212 DLEQAVAAGATHLRVGSAILGSRP 235
>gi|310828910|ref|YP_003961267.1| hypothetical protein ELI_3342 [Eubacterium limosum KIST612]
gi|308740644|gb|ADO38304.1| hypothetical protein ELI_3342 [Eubacterium limosum KIST612]
Length = 220
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 97/213 (45%), Gaps = 14/213 (6%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
EN A + K ++V+LV V+K ++ + + G ENK+QE K ++ V
Sbjct: 8 ENIAAIKKDIPENVTLVGVTKHRSVEETQAVVDAGVYDLGENKVQEFLAKVDEVK--GPV 65
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
+ FIG LQ NKV ++ +I +V + E K V IQ N E K
Sbjct: 66 RWHFIGHLQRNKVKYLMGKVSLIHSVHSVPLLKTIEKESAKHGVKTNVLIQFNLAKEDSK 125
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPP-AMGNPKPH--FYLLSEI---------AR 182
SG M + + + L V+GLMCI P + + H F L E+
Sbjct: 126 SGFMAEEYEMVMKEVGNCPHLEVQGLMCIGPMTKKSDEIHKVFKHLKELYDTIEKEYHGE 185
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
K+ LSMGMT D+ +AI GAT VRIG IF
Sbjct: 186 NIKMQYLSMGMTDDYPIAIEEGATIVRIGRKIF 218
>gi|87303083|ref|ZP_01085881.1| hypothetical protein WH5701_06251 [Synechococcus sp. WH 5701]
gi|87282250|gb|EAQ74210.1| hypothetical protein WH5701_06251 [Synechococcus sp. WH 5701]
Length = 215
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 15/221 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L +L+ ++++ A L+AVSK + ++R A++ G F E++LQEA
Sbjct: 5 ALAQRLETLQEQLPPQA----------RLLAVSKGQPAARLREAVALGLRSFGESRLQEA 54
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L + + FIG LQ+NK ++ F I +V A L + + + P
Sbjct: 55 QAKQAELAELEPLDWHFIGRLQANKARGVLRHFGTIHSVDSLPLAERLQ-RIAAEEQLSP 113
Query: 122 -VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
V+ QV + K+G P + + R L GLM I P F L +
Sbjct: 114 RVFFQVKLRPDPGKTGFEPRELEQCWPRLRALEPLVPVGLMTIAPLGLEADQRFGLFQDC 173
Query: 180 --IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A L +LSMGM+ D+ A+ +G+T VR+GS +FG R
Sbjct: 174 AALAATLGLKELSMGMSSDWPEAVRAGSTWVRLGSALFGPR 214
>gi|322375674|ref|ZP_08050186.1| pyridoxal phosphate enzyme, YggS family [Streptococcus sp. C300]
gi|321279382|gb|EFX56423.1| pyridoxal phosphate enzyme, YggS family [Streptococcus sp. C300]
Length = 223
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 25/231 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L ++ Q+I +++ A R D+VS++AV+K VD + L G EN++ +
Sbjct: 1 MNLKKNTELVFQQIADASQEANRALDAVSVIAVTKYVDVQTAEALLPLGVRHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
+K+ L K++ V IG+LQ KV E++ D + K L+ E+ K++
Sbjct: 61 FLEKYQAL-KDYPVTWHLIGTLQRRKVKEVIPYVDYFHALDSLK----LAQEIQKRTDHV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ ++QVN E K G + + + + Q+ GLM + P + L E
Sbjct: 116 IKCFLQVNISGEESKHGFSKEELLELLPELAKLDQIEYVGLMTMAPFEADSDE----LKE 171
Query: 180 IARECK---------------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
I ++ + +T+LSMGM+RDF+ AI G+T VRIG+ F
Sbjct: 172 IFKDTQALQAEIREKQIPNIPMTELSMGMSRDFKEAIQFGSTFVRIGTAFF 222
>gi|168704574|ref|ZP_02736851.1| hypothetical protein GobsU_33869 [Gemmata obscuriglobus UQM 2246]
Length = 235
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 100/225 (44%), Gaps = 18/225 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + K +I + A R D V+LVAV+K V + G E++ QE
Sbjct: 10 LSERFAAVKGRIAEACRRAGRTPDGVTLVAVTKTVSPAVAALVPPLGVRALGESRPQELW 69
Query: 63 KKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K + +W IG LQ NK+ V L ++ +V + L +L Q R P
Sbjct: 70 RKAEAVAGADW----HLIGHLQRNKIDRTVPLVSLVHSVDSARV--LDALNAFGQKRGAP 123
Query: 122 VYI--QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
V + +VN E K G P + ++V GLM + +P +P F
Sbjct: 124 VAVLLEVNCSGEESKGGFSPAEVPALGDTLAGLGGVDVRGLMTMAAYSDDPASARPTFAR 183
Query: 177 LSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L E+ + + L +LSMGM+ DFE+ + GAT VR+G+ +F
Sbjct: 184 LRELRDQLRARTGLALNELSMGMSNDFEIGVEEGATLVRVGTTLF 228
>gi|77408380|ref|ZP_00785120.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
COH1]
gi|77413550|ref|ZP_00789738.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
515]
gi|77160379|gb|EAO71502.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
515]
gi|77172983|gb|EAO76112.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
COH1]
gi|319744577|gb|EFV96930.1| cell division protein YlmE [Streptococcus agalactiae ATCC 13813]
Length = 224
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 111/224 (49%), Gaps = 20/224 (8%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
NK +F + A+ A R +SV +VAV+K V+ + + G EN++ + +K
Sbjct: 7 NKTAIF-DNVSKLALKAGRAPESVHIVAVTKYVNCQTTEALIRTGVNHIGENRVDKFLEK 65
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV-- 122
+ L+ E + IGSLQ KV ++++ D + K A+ E+ K+++ PV
Sbjct: 66 YQALKDE-KLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAA----EIQKRAQ-KPVKC 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-- 180
++QVN E K G Q D + L + ++ + G+M + P + + E
Sbjct: 120 FLQVNISREDSKHGFTIEQIDDALNLISRYDKIELIGIMTMAPLKATKEEISSIFEETES 179
Query: 181 ------ARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
AR + T+LSMGM+RD+++AI +G+T VRIG+ F
Sbjct: 180 LRKRLQARNIERMPFTELSMGMSRDYDIAIQNGSTFVRIGTSFF 223
>gi|217963824|ref|YP_002349502.1| pyridoxal phosphate enzyme, YggS family [Listeria monocytogenes
HCC23]
gi|217333094|gb|ACK38888.1| pyridoxal phosphate enzyme, YggS family [Listeria monocytogenes
HCC23]
gi|307571605|emb|CAR84784.1| conserved hypothetical protein [Listeria monocytogenes L99]
Length = 229
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 113/229 (49%), Gaps = 17/229 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R V+LVAV+K +D+ I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQAKDVTLVAVTKTIDAAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRF 119
++K + L + D+ +IGSLQ+ KV +++ D + ++ R S L+ E+ K+ ++
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDR----SSLAKEIEKRATKP 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-KPH--FYL 176
+ ++QVN E K G + F+ + + + GLM + P + + H F+
Sbjct: 117 VKCFLQVNISGEESKHGFSKEEALSFLQEANFTF-IEIVGLMTMAPITNSDIELHHVFHE 175
Query: 177 LSEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
L ++ +E T+LSMGMT D+ +AI GAT +R+G + +
Sbjct: 176 LKQLQQEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVGRALVSD 224
>gi|325690197|gb|EGD32201.1| cell division protein YlmE [Streptococcus sanguinis SK115]
Length = 223
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 114/229 (49%), Gaps = 21/229 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A R KDSV+++AV+K VD + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAHRLKDSVNIIAVTKYVDCETTQELARTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
K+ L+ E ++ IGSLQ KV ++++ D + K A E+ K++
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAK----EIDKRAEHV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPH---F 174
+ ++Q+N E K G + + V+L + NV+ GLM + P + + F
Sbjct: 116 IKCFLQLNISKEESKHGFLVEDLE--VVLPELEKLENVQIVGLMTMAPFEASHEELNQIF 173
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 174 EKAHQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|253581436|ref|ZP_04858661.1| proline synthetase associated protein [Fusobacterium varium ATCC
27725]
gi|251836506|gb|EES65041.1| proline synthetase associated protein [Fusobacterium varium ATCC
27725]
Length = 225
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 102/202 (50%), Gaps = 12/202 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW--DVQLRFIGSLQ 83
+ +AV+K V ++++ ++CG +F ENK Q K+K + DV+ FIG+LQ
Sbjct: 23 ERARFIAVTKYVGAEEMIPIVNCGVKVFGENKAQIMKEKQEKFNEMGIKDVEWHFIGNLQ 82
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NKV I +I +V++ A + + +R + V +++N E K G +
Sbjct: 83 KNKVKYIAEYVKMIHSVNKLSLAQEIDKRAKQYNRIIDVLLEINIAGEESKEGYELEELY 142
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAREC-------KLTKLSMGM 193
+ + + +N+ GLM + P + + + F L EI E KL +LSMGM
Sbjct: 143 EELPQLMELKNINIVGLMTMAPFVNDEELLRSVFRRLREIKDELNEKWFKGKLVELSMGM 202
Query: 194 TRDFELAIASGATSVRIGSGIF 215
T D+++A+ GAT +R+G IF
Sbjct: 203 TNDYKIALEEGATLIRVGRKIF 224
>gi|239622623|ref|ZP_04665654.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|239514620|gb|EEQ54487.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
Length = 271
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 101/242 (41%), Gaps = 34/242 (14%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK- 70
+I + +A R SV L+A +K D +I A+ G EN+ QE K L +
Sbjct: 28 DRIAEAESVAGREAGSVHLLAATKTRDVGEILAAIDAGVHRIGENRPQEIIVKAPGLARL 87
Query: 71 ---------------------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL 109
+ IG LQ+NK+S+++ + D IE+V + A +
Sbjct: 88 LAERGYSLGVVETEGGAAADAAHHIPFHLIGQLQANKISKVLPVVDTIESVDSIELAEKI 147
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
+ + + V ++VN E KSG P+ D L ++GLM I + +
Sbjct: 148 ARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMDGLRLQGLMTIGAHVDD 207
Query: 170 PK------PHF------YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ H L S T+LSMGMT D AI G+T VR+G+ IFGE
Sbjct: 208 ERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMTYAIEEGSTIVRVGTAIFGE 267
Query: 218 RP 219
R
Sbjct: 268 RA 269
>gi|157737116|ref|YP_001489799.1| hypothetical protein Abu_0870 [Arcobacter butzleri RM4018]
gi|157698970|gb|ABV67130.1| conserved hypothetical protein [Arcobacter butzleri RM4018]
Length = 226
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 108/206 (52%), Gaps = 25/206 (12%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V ++ +SK ++ I+ GQ F ENK+Q+ K+K L E ++ F+G+LQ NK+
Sbjct: 30 VKVIGISKYSTTQDIKTLYEAGQRAFGENKVQDLKQKSEELD-ELPIEWHFVGTLQKNKI 88
Query: 88 SEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
+ ++ L +I ++ A L+ ++ +++ L +Q+N+ E KSG+ + KD V
Sbjct: 89 NNLIDLNPTLIHSLDSLDLAQELNKKLEAKNKKLSCLLQINSANEDTKSGV---EAKDAV 145
Query: 147 ILCRQKYQ----LNVEGLMCIPPAMGNPK---PHFYLLSEI--------ARECKLTKLSM 191
+ ++ + + ++G+MCI + K F + I A+ C SM
Sbjct: 146 KIYKEILETCPNIILKGVMCIGANSTDIKLIKESFKITKNIFDELVPFGAKYC-----SM 200
Query: 192 GMTRDFELAIASGATSVRIGSGIFGE 217
GM+ DFELAIA G+ +R+GS +F E
Sbjct: 201 GMSSDFELAIACGSNMIRVGSTLFKE 226
>gi|25010596|ref|NP_734991.1| hypothetical protein gbs0527 [Streptococcus agalactiae NEM316]
gi|23094949|emb|CAD46171.1| Unknown [Streptococcus agalactiae NEM316]
Length = 223
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 111/224 (49%), Gaps = 20/224 (8%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
NK +F + A+ A R +SV +VAV+K V+ + + G EN++ + +K
Sbjct: 6 NKTAIF-DNVSKLALKAGRAPESVHIVAVTKYVNCQTTEALIRTGVNHIGENRVDKFLEK 64
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV-- 122
+ L+ E + IGSLQ KV ++++ D + K L+ E+ K+++ PV
Sbjct: 65 YQALKDE-KLTWHLIGSLQRRKVKDVINYVDYFHALDSVK----LAAEIQKRAQ-KPVKC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-- 180
++QVN E K G Q D + L + ++ + G+M + P + + E
Sbjct: 119 FLQVNISREDSKHGFTIEQIDDALNLISRYDKIELIGIMTMAPLKATKEEISSIFEETES 178
Query: 181 ------ARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
AR + T+LSMGM+RD+++AI +G+T VRIG+ F
Sbjct: 179 LRKRLQARNIERMPFTELSMGMSRDYDIAIQNGSTFVRIGTSFF 222
>gi|293365889|ref|ZP_06612592.1| cell division protein YlmE [Streptococcus oralis ATCC 35037]
gi|307702293|ref|ZP_07639251.1| alanine racemase, N-terminal domain protein [Streptococcus oralis
ATCC 35037]
gi|331265953|ref|YP_004325583.1| hypothetical protein SOR_0580 [Streptococcus oralis Uo5]
gi|291315567|gb|EFE56017.1| cell division protein YlmE [Streptococcus oralis ATCC 35037]
gi|307624096|gb|EFO03075.1| alanine racemase, N-terminal domain protein [Streptococcus oralis
ATCC 35037]
gi|326682625|emb|CBZ00242.1| conserved hypothetical protein [Streptococcus oralis Uo5]
Length = 223
Score = 82.4 bits (202), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 25/231 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L ++ Q+I +++ A R D+VS++AV+K VD + L G EN++ +
Sbjct: 1 MNLKKNTELVFQQIADASQEANRALDAVSVIAVTKYVDVQTAEALLPLGVRHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
+K+ L K++ V IG+LQ KV E++ D + K L+ E+ K++
Sbjct: 61 FLEKYQAL-KDYPVTWHLIGTLQRRKVKEVIPYVDYFHALDSLK----LAQEIQKRTDHV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ ++QVN E K G + + + + Q+ GLM + P + L E
Sbjct: 116 IKCFLQVNISGEESKHGFSKEELLELLPELAKLDQIEYVGLMTMAPFEADSDE----LKE 171
Query: 180 IARECK---------------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
I ++ + +T+LSMGM+RDF+ AI G+T VRIG+ F
Sbjct: 172 IFKDTQALQAEIREKQIPNMPMTELSMGMSRDFKEAIQFGSTFVRIGTAFF 222
>gi|290892177|ref|ZP_06555173.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|290558300|gb|EFD91818.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
Length = 229
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 113/229 (49%), Gaps = 17/229 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R V+LVAV+K +D+ I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQAKEVTLVAVTKTIDAAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRF 119
++K + L + D+ +IGSLQ+ KV +++ D + ++ R S L+ E+ K+ ++
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDR----SSLAKEIEKRATKP 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-KPH--FYL 176
+ ++QVN E K G + F+ + + + GLM + P + + H F+
Sbjct: 117 VKCFLQVNISGEESKHGFSKEEALSFLQEANFTF-IEIVGLMTMAPITNSDIELHHVFHE 175
Query: 177 LSEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
L ++ +E T+LSMGMT D+ +AI GAT +R+G + +
Sbjct: 176 LKQLQQEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVGRALVSD 224
>gi|149011473|ref|ZP_01832720.1| ylmE protein [Streptococcus pneumoniae SP19-BS75]
gi|147764463|gb|EDK71394.1| ylmE protein [Streptococcus pneumoniae SP19-BS75]
Length = 223
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 112/227 (49%), Gaps = 17/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD LS G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLSLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
+K+ L K+ DV IG+LQ KV +++ D + K A E+ K+S R
Sbjct: 61 FLEKYEAL-KDRDVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAG----EIQKRSDRV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ ++QVN E K G + + + + ++ GLM + P + K F
Sbjct: 116 IKCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKA 175
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 176 AQDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|260063098|ref|YP_003196178.1| hypothetical protein RB2501_15954 [Robiginitalea biformata
HTCC2501]
gi|88784667|gb|EAR15837.1| hypothetical protein RB2501_15954 [Robiginitalea biformata
HTCC2501]
Length = 219
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 93/203 (45%), Gaps = 12/203 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
D V+LVAVSK D I A G +F EN++QE K+ L K D+Q IG LQ N
Sbjct: 18 DGVTLVAVSKTKDDSAIMEAYEAGHRVFGENRVQELTAKYERLPK--DIQWHMIGHLQRN 75
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV + +I+ V + + + R + +QV+ E K G + ++
Sbjct: 76 KVKYLAPFVSLIQGVDSPRLLREIDKRGRQAGRVIDCLLQVHIAEEDSKFGFDREELEEL 135
Query: 146 VI--LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI-----ARECKLTKLSMGMTR 195
+ R+ + V G+M + N + F L + + + LSMGM+
Sbjct: 136 LAGGSLREMEHVRVRGMMGMATFTDNTAQVRREFASLKALYDRWLEADPRADILSMGMSG 195
Query: 196 DFELAIASGATSVRIGSGIFGER 218
D+ +A+ G+ VRIGS IFG R
Sbjct: 196 DYRIALEEGSNMVRIGSSIFGAR 218
>gi|307152198|ref|YP_003887582.1| alanine racemase domain-containing protein [Cyanothece sp. PCC
7822]
gi|306982426|gb|ADN14307.1| alanine racemase domain protein [Cyanothece sp. PCC 7822]
Length = 218
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 103/202 (50%), Gaps = 11/202 (5%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V L+AV+K V ++ +R A G FAEN+LQEA K L+ D+ FIG LQSNK
Sbjct: 17 HVRLIAVTKQVPTEAMREAYQAGIRDFAENRLQEALVKQEQLQDLPDLCWHFIGHLQSNK 76
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDF 145
+++ F+ I +V + L + S + +QV + K G +P +D
Sbjct: 77 AKKVLESFEWIHSVDSLELLQRLDRLAKELSNVPRICLQVKVLPDPNKYGWPIPEFLQD- 135
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA------RECKLTKLSMGMTRD 196
+ + QL ++GLM I P N K F ++A + ++ +LSMGM+ D
Sbjct: 136 IPQIEKCCQLKIQGLMTILPLGLNEAEIKAAFETTRKLALQVNGQSQLEIRELSMGMSDD 195
Query: 197 FELAIASGATSVRIGSGIFGER 218
++ A+ GAT +R+G +FGER
Sbjct: 196 YQWAVGEGATMIRLGRILFGER 217
>gi|225352554|ref|ZP_03743577.1| hypothetical protein BIFPSEUDO_04178 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225156748|gb|EEG70142.1| hypothetical protein BIFPSEUDO_04178 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 274
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 106/243 (43%), Gaps = 37/243 (15%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLR 69
+I ++ A R SV L+A +K D +I A+ G + EN+ QE AK + + R
Sbjct: 32 DRIASAEQHAGRDAGSVRLLAATKTRDVGEIMAAIDAGVRMIGENRPQEVMAKAEGLMAR 91
Query: 70 -------------------KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS 110
+ IG LQSNK+ +++ + + IE+V A +S
Sbjct: 92 CGERGFALGVADDAGASTIAGEHIPFHLIGQLQSNKIGKVLPVVNTIESVDSLDLAEKIS 151
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN- 169
+ + + V ++VN E KSG P+ L ++GLM I + +
Sbjct: 152 RRAVARGITVGVLLEVNESGEASKSGCDPSHAIRIAQKIGTLDGLELQGLMTIGAHVDDE 211
Query: 170 ------------PKPHFYLLSEIARE-CKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ H E + C+ +LSMGMT D ELA+A G+T VR+G+ IFG
Sbjct: 212 TAIRKGFEHLRKTRDHILESGEPGTQSCR--ELSMGMTGDMELAVAEGSTIVRVGTAIFG 269
Query: 217 ERP 219
ER
Sbjct: 270 ERA 272
>gi|77411425|ref|ZP_00787771.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
CJB111]
gi|77162511|gb|EAO73476.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
CJB111]
Length = 224
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 110/223 (49%), Gaps = 18/223 (8%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
NK +F + A+ A R +SV +VAV+K V+ + + G EN++ + +K
Sbjct: 7 NKTAIF-DNVSKLALKAGRAPESVHIVAVTKYVNCQTTEALIRTGVNHIGENRVDKFLEK 65
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RFLPVY 123
+ L+ E + IGSLQ KV ++++ D + K A+ E+ K++ + + +
Sbjct: 66 YQALKDE-KLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAA----EIQKRAQKPIKCF 120
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--- 180
+QVN E K G Q D + L + ++ + G+M + P + + E
Sbjct: 121 LQVNISREDSKHGFTIEQIDDALNLISRYDKIELIGIMTMAPLKATKEEISSIFEETESL 180
Query: 181 -----ARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
AR + T+LSMGM+RD+++AI +G+T VRIG+ F
Sbjct: 181 RKRLQARNIERMPFTELSMGMSRDYDIAIQNGSTFVRIGTSFF 223
>gi|145248690|ref|XP_001400684.1| alanine racemase family protein [Aspergillus niger CBS 513.88]
gi|134081351|emb|CAK41854.1| unnamed protein product [Aspergillus niger]
Length = 271
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 107/243 (44%), Gaps = 46/243 (18%)
Query: 16 NSAILAKRPKDSVSLVAVSKMVDSKKI---RVALSCGQVIFAENKLQE--AKKKWIPLRK 70
N+A + LVAVSK+ + I Q F EN LQE K + +P
Sbjct: 28 NTATTSSPKSTPPRLVAVSKLKPASDILTLHTNPPAHQTHFGENYLQELQEKARLLPTTI 87
Query: 71 EWDVQLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLLS---------LEMIKQSR 118
+W FIG LQSNK ++ +E+V K ASLL ++
Sbjct: 88 KW----HFIGGLQSNKCVTLARDTPALWAVESVDSTKKASLLDKGWGERSAEVKETNHEE 143
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR----QKYQLNVEGLMCI-------PPAM 167
L V++QVNT E KSG+ P + LCR + +L ++G+M I
Sbjct: 144 RLRVFVQVNTSGEENKSGVEPGDGA--LELCRFIRDKCPRLRLQGVMTIGAIARSKATTP 201
Query: 168 GNPKPHFYLLSE-----------IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
N F L E + E L +LSMGM+ DFE AIA G+ VR+G+ IFG
Sbjct: 202 ENENEDFVCLRETRDRVVKELGLLGEEAAL-ELSMGMSEDFEGAIALGSDEVRVGTTIFG 260
Query: 217 ERP 219
+RP
Sbjct: 261 DRP 263
>gi|123455783|ref|XP_001315632.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121898315|gb|EAY03409.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 227
Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 107/215 (49%), Gaps = 25/215 (11%)
Query: 20 LAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLR 77
+ K + LV VSK + ++ G IF EN + E K +P D Q
Sbjct: 16 IVKNLSSTAHLVCVSKTKPIEDLKQVFEAGGRIFGENYVDEIITKGPQLP-----DAQFH 70
Query: 78 FIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKS 135
IG LQSNKV+++ + ++ I+++ ++ A+ + + + + + L V IQ+NT E QKS
Sbjct: 71 MIGHLQSNKVAKLCKVENLVMIQSIDSKELATKVDKQYVNR-KPLEVLIQINTSAEPQKS 129
Query: 136 GIM----PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE----IARECKLT 187
GI ++ F++ + L G+M I G F L E IA E +
Sbjct: 130 GIANGAEASELAKFIV--ENCHNLKFRGVMTIGET-GEASRDFACLVEERRRIAGELGMK 186
Query: 188 ----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ELA+ GAT VR+GS IFG R
Sbjct: 187 PEDLELSMGMSADYELALKMGATFVRVGSSIFGPR 221
>gi|296125213|ref|YP_003632465.1| alanine racemase domain protein [Brachyspira murdochii DSM 12563]
gi|296017029|gb|ADG70266.1| alanine racemase domain protein [Brachyspira murdochii DSM 12563]
Length = 231
Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 17/204 (8%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCG-QVIFAENKLQEAKKKWIPLRKEWD-VQLRFIGSLQS 84
VSLVAVSK + I+ LS + E+K Q + + + K D V+ FIG +QS
Sbjct: 29 DVSLVAVSKYSSIETIKEFLSLNIDLPLGESKAQSLRDRVGEIGKIKDNVKWHFIGRIQS 88
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV IV D+I++V + A ++ E +K ++ + +Q N E+QK G + D
Sbjct: 89 NKVKYIVKYADLIQSVDSIEIAECINKEALKNNKVQDILLQFNISDEVQKGGFTAD---D 145
Query: 145 FVILCRQKYQL---NVEGLMCIPPAMGNP---KPHFYLLSEIARECK------LTKLSMG 192
++ + ++ +V+GLM I + + F L+ I +E L+ LSMG
Sbjct: 146 YIGVYENIMKMPNISVKGLMAIGKDTEDSYVIEEEFEHLNLIYKEINKKYNNTLSILSMG 205
Query: 193 MTRDFELAIASGATSVRIGSGIFG 216
M+ D+ELAI G+ VRIGS G
Sbjct: 206 MSSDYELAIKHGSNMVRIGSSFLG 229
>gi|331238864|ref|XP_003332086.1| alanine racemase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
gi|309311076|gb|EFP87667.1| alanine racemase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
Length = 264
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 106/222 (47%), Gaps = 34/222 (15%)
Query: 28 VSLVAVSKMVDSKKI-RVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V LVAVSK+ + I + + G + F EN + E ++K L D++ FIG+LQSNK
Sbjct: 40 VRLVAVSKLKPASDILTLYRTTGHLHFGENYVSELQEKVKAL--PGDIKWHFIGALQSNK 97
Query: 87 ---VSEIVSLFDVIETVSREKTASLL-----SLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
+ I +LF +ETV A LL L Q L VY+QVNT E K+G +
Sbjct: 98 CKILGAIPNLF-AVETVDSLHKAQLLEKSRSGLASSVQVNPLEVYLQVNTSEEASKAGFI 156
Query: 139 PNQTKDFV---ILCRQKY------QLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK- 188
+ + + KY L + GLM I ++G K + R +L
Sbjct: 157 TPSNEPILSSNLHSTAKYIKEECRWLKLAGLMTIG-SIGQSKSDQGTNKDFERLVQLRDQ 215
Query: 189 -----------LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
LSMGM+ DF LAI G+ +VR+GS IFGERP
Sbjct: 216 LSESLGGLELGLSMGMSADFALAIKMGSDNVRVGSSIFGERP 257
>gi|224501168|ref|ZP_03669475.1| hypothetical protein LmonFR_01385 [Listeria monocytogenes FSL
R2-561]
gi|284802478|ref|YP_003414343.1| hypothetical protein LM5578_2234 [Listeria monocytogenes 08-5578]
gi|284995620|ref|YP_003417388.1| hypothetical protein LM5923_2185 [Listeria monocytogenes 08-5923]
gi|284058040|gb|ADB68981.1| hypothetical protein LM5578_2234 [Listeria monocytogenes 08-5578]
gi|284061087|gb|ADB72026.1| hypothetical protein LM5923_2185 [Listeria monocytogenes 08-5923]
Length = 229
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 113/229 (49%), Gaps = 17/229 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE++ + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIEHACEESNRQSEDVTLVAVTKTIDVTGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRF 119
+K + L + D+ +IGSLQ+ KV +++ D + ++ R S L+ E+ K+ ++
Sbjct: 61 FLEKTVELADKDDICWHYIGSLQTRKVKDVLPQIDYLHSLDR----SSLAKEIEKRATKP 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-KPH--FYL 176
+ ++QVN E K G + F+ + + + GLM + P + + H F+
Sbjct: 117 VKCFLQVNISGEESKHGFSKEEALSFLQEANFTF-IEIVGLMTMAPITNSDIELHHVFHE 175
Query: 177 LSEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
L ++ +E T+LSMGMT D+ +AI GAT +R+G + +
Sbjct: 176 LKQLQQEIHALQLKNIPCTELSMGMTNDYGIAITEGATFIRVGRALVND 224
>gi|107099380|ref|ZP_01363298.1| hypothetical protein PaerPA_01000392 [Pseudomonas aeruginosa PACS2]
Length = 197
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 76/171 (44%), Gaps = 6/171 (3%)
Query: 53 FAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
F EN LQEA K L + + FIG +QSNK I F + +V R K A LS +
Sbjct: 21 FGENYLQEALGKQAEL-ADLPLNWHFIGPIQSNKTRPIAEHFQWVHSVDRLKIAQRLSEQ 79
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPK 171
L V +QVN E KSG P +Q L + GLM IP P
Sbjct: 80 RPAGLPPLNVCLQVNVSGEASKSGCAPEDLPALAEAVKQLPNLRLRGLMAIPEPTAERAA 139
Query: 172 PHFYL----LSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
H + L LSMGM+ D E AI GAT VRIG+ +FG R
Sbjct: 140 QHAAFARLRELLLDLNLGLDTLSMGMSDDLEAAIGEGATWVRIGTALFGAR 190
>gi|315636798|ref|ZP_07892024.1| TIM-barrel fold protein [Arcobacter butzleri JV22]
gi|315478924|gb|EFU69631.1| TIM-barrel fold protein [Arcobacter butzleri JV22]
Length = 226
Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 108/206 (52%), Gaps = 25/206 (12%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V ++ +SK ++ I+ GQ F ENK+Q+ K+K L E ++ F+G+LQ NK+
Sbjct: 30 VKIIGISKYSTTQDIKTLYEAGQRAFGENKVQDLKQKSEEL-DELPIEWHFVGTLQKNKI 88
Query: 88 SEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
+ ++ L +I ++ A L+ ++ +++ L +Q+N+ E KSG+ + KD +
Sbjct: 89 NNLIDLNPTLIHSLDSLDLAQELNKKLEAKNKNLSCLLQINSANEDTKSGV---EAKDAI 145
Query: 147 ILCRQKYQ----LNVEGLMCIPPAMGNPK---PHFYLLSEI--------ARECKLTKLSM 191
+ ++ + + ++G+MCI + K F + + A+ C SM
Sbjct: 146 KIYKEILETCPNIILKGVMCIGANSTDIKLIKESFKITKNVFDELVPFGAKYC-----SM 200
Query: 192 GMTRDFELAIASGATSVRIGSGIFGE 217
GM+ DFELAIA G+ +R+GS +F E
Sbjct: 201 GMSSDFELAIACGSNMIRVGSTLFKE 226
>gi|213510984|ref|NP_001135276.1| proline synthase co-transcribed bacterial homolog protein [Salmo
salar]
gi|209155828|gb|ACI34146.1| Proline synthetase co-transcribed bacterial homolog protein [Salmo
salar]
Length = 282
Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 115/242 (47%), Gaps = 28/242 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+G LQ ++ +A A+RPK LVAVSK + A G F EN +
Sbjct: 10 VGKALQAVVDRVNQAA--ARRPKTLPVVPPRLVAVSKTKPPDMVIEAYRKGHRNFGENYV 67
Query: 59 QE-AKKKWIP--LRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEM 113
E K P L +++ FIG LQ N V++++ + ++ +ETV K A ++
Sbjct: 68 NELVDKASNPQILESCPEIEWHFIGHLQKNNVNKLLGVPNLFMVETVDSVKLADKVNSSW 127
Query: 114 IK----QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIP---- 164
++ ++ L + +Q+NT E K G+ P++T V K L+ GLM I
Sbjct: 128 LRLRTASTQTLKIMVQINTSGEESKHGLPPDETVTTVKHILSKCSALHFSGLMTIGRYGY 187
Query: 165 PAMGNPKPHF-YLLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
P P F LLS C + +LSMGM+ DFE AI G+T+VR+GS IFG
Sbjct: 188 DLADGPNPDFQALLSRRQEVCASLQLPLEDVELSMGMSTDFEHAIEVGSTNVRVGSTIFG 247
Query: 217 ER 218
R
Sbjct: 248 NR 249
>gi|242059919|ref|XP_002459105.1| hypothetical protein SORBIDRAFT_03g045890 [Sorghum bicolor]
gi|241931080|gb|EES04225.1| hypothetical protein SORBIDRAFT_03g045890 [Sorghum bicolor]
Length = 248
Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 93/187 (49%), Gaps = 22/187 (11%)
Query: 49 GQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL---FDVIETVSREKT 105
G F EN +QE K L + DV+ FIG LQSNKV +++ D++E V EK
Sbjct: 59 GHRCFGENYVQEFVTKAPQLPE--DVRWHFIGHLQSNKVKPLLAAVPNLDMVEGVDNEKI 116
Query: 106 ASLLSLEMIKQSRF-LPVYIQVNTGYEIQKSGIMPNQTKDFV----ILCRQKYQLNVEGL 160
A+ L + R L V +QVNT E KSGI P++ D + C L GL
Sbjct: 117 ANHLDRAVNSLGREPLKVLVQVNTSGEESKSGIDPSKCVDLAKHVKLACPH---LIFSGL 173
Query: 161 MCIPPAMGNPKP-HFYLLSEIARE-CKLT-------KLSMGMTRDFELAIASGATSVRIG 211
M I + P +F L E CK +LSMGM+ DFE AI G+T+VRIG
Sbjct: 174 MTIGMKDYSSTPENFKALVNCKLEVCKALDIPTEQFELSMGMSGDFEQAIEMGSTNVRIG 233
Query: 212 SGIFGER 218
S IFG R
Sbjct: 234 STIFGPR 240
>gi|322372689|ref|ZP_08047225.1| pyridoxal phosphate enzyme, YggS family [Streptococcus sp. C150]
gi|321277731|gb|EFX54800.1| pyridoxal phosphate enzyme, YggS family [Streptococcus sp. C150]
Length = 227
Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 16/225 (7%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
NK V+ Q ++ + A R D V+++AV+K V S + G AEN++ + K
Sbjct: 6 NKNNVY-QAVKAACEKANRSSDEVNIIAVTKYVSSDIAEELVKTGIKHIAENRVDKFLDK 64
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ L +D+ IG+LQ KV ++++L D + K A + + + + ++
Sbjct: 65 YQALNN-YDLTWHLIGTLQRRKVKDVINLVDYFHALDSVKLAEEIQK---RANHTIKCFL 120
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA--- 181
QVN E K G P + + + + + GLM + P + + + S+
Sbjct: 121 QVNVSGEESKHGFSPEELDTVLDQIKNLDNICIVGLMTMAPIDADNQELDEIFSQTNELR 180
Query: 182 ---RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E K+ +LSMGM+RDF+ AI +G+T VRIGS F E
Sbjct: 181 KSIQEKKIKNVPCDQLSMGMSRDFDEAIQNGSTFVRIGSAFFKEN 225
>gi|304382896|ref|ZP_07365378.1| YggS family pyridoxal phosphate enzyme [Prevotella marshii DSM
16973]
gi|304335921|gb|EFM02169.1| YggS family pyridoxal phosphate enzyme [Prevotella marshii DSM
16973]
Length = 225
Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 97/205 (47%), Gaps = 16/205 (7%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V LVA+SK ++ I A GQ IF E+ QE KK L K D+ FIG LQ+NKV
Sbjct: 21 VKLVAISKYHPNEYIETAYREGQRIFGESHEQELAKKHDALPK--DIAWHFIGHLQTNKV 78
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
IV +IE V K ++ + K R + V +++ E K G+ N + +
Sbjct: 79 KYIVPYISMIEAVDSLKLLKEINKQAAKHERVVKVLLELRVAQEATKYGLSFNDCRALLE 138
Query: 148 L--CRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEIARECK---------LTKLSMGM 193
R+ + + GLM + + + K F ++ E K + S GM
Sbjct: 139 AGEWREMKHVKLCGLMTMASHVSDEKQITEEFTRAADFFDEVKSRYFKEDADFKERSWGM 198
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
++D+ +AI +T VR+G+ IFGER
Sbjct: 199 SQDYPIAIKCRSTMVRVGTRIFGER 223
>gi|47094013|ref|ZP_00231745.1| conserved hypothetical protein TIGR00044 [Listeria monocytogenes
str. 4b H7858]
gi|254826213|ref|ZP_05231214.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|254854032|ref|ZP_05243380.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|254933459|ref|ZP_05266818.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|254992794|ref|ZP_05274984.1| hypothetical protein LmonocytoFSL_06864 [Listeria monocytogenes FSL
J2-064]
gi|300765466|ref|ZP_07075447.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
gi|47017618|gb|EAL08419.1| conserved hypothetical protein TIGR00044 [Listeria monocytogenes
str. 4b H7858]
gi|258607424|gb|EEW20032.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|293585020|gb|EFF97052.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|293595454|gb|EFG03215.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|300513777|gb|EFK40843.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
gi|328466094|gb|EGF37264.1| hypothetical protein LM1816_05288 [Listeria monocytogenes 1816]
gi|328472680|gb|EGF43538.1| hypothetical protein LM220_03462 [Listeria monocytogenes 220]
gi|332312481|gb|EGJ25576.1| YggS family pyridoxal phosphate enzyme [Listeria monocytogenes str.
Scott A]
Length = 229
Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 113/229 (49%), Gaps = 17/229 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQPEDVTLVAVTKTIDVAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRF 119
++K + L + D+ +IGSLQ+ KV +++ D + ++ R S L+ E+ K+ ++
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDR----SSLAKEIEKRATKP 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-KPH--FYL 176
+ ++QVN E K G + F+ + + + GLM + P + + H F+
Sbjct: 117 VKCFLQVNISGEESKHGFSKEEALSFLQEANFTF-IEIVGLMTMAPITNSDIELHHVFHE 175
Query: 177 LSEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
L ++ +E T+LSMGMT D+ +AI GAT +R+G + +
Sbjct: 176 LKQLQQEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVGRALVSD 224
>gi|170090438|ref|XP_001876441.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647934|gb|EDR12177.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 270
Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 113/242 (46%), Gaps = 44/242 (18%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
A + P + +LVAVSK+ + I GQ+ F EN +QE ++K L D++
Sbjct: 27 AASSSSPGHTPTLVAVSKIKPASDILACYEAGQLDFGENYVQELEEKARVLPA--DIRWH 84
Query: 78 FIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIKQSRF-LPVYIQVNTGYEIQK 134
FIG+LQSNK + S+ ++T++ K AS L+ + + L V+IQVNT E K
Sbjct: 85 FIGTLQSNKAKTLASIPNLHAVQTLNSTKAASALNKALPSDRPYPLRVFIQVNTSGETSK 144
Query: 135 SGI------MPNQTKDFVILCR----QKYQLNVEGLMCI-------PPAMGNPKPHFYLL 177
SG+ + + L R + +L +EGLM I + F L
Sbjct: 145 SGLDTLSSASDLDSSELAQLARYVLTECPKLRLEGLMTIGALELSLSASEVEKNADFERL 204
Query: 178 SEI-------------------ARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
E R+ LT LSMGM+ DFE A+ +G+ VR+G+GIFG
Sbjct: 205 KETRDVLDGYLGGLSGDGEKSWGRQGWGGLT-LSMGMSSDFEAALKAGSDIVRVGTGIFG 263
Query: 217 ER 218
+R
Sbjct: 264 QR 265
>gi|254827081|ref|ZP_05231768.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|258599464|gb|EEW12789.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
Length = 229
Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 113/229 (49%), Gaps = 17/229 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE++ + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIEHACEESNRQSEDVTLVAVTKTIDVTGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRF 119
+K + L + D+ +IGSLQ+ KV +++ D + ++ R S L+ E+ K+ ++
Sbjct: 61 FLEKTVELADKDDICWHYIGSLQTRKVKDVLPQIDYLHSLDR----SSLAKEIEKRATKP 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-KPH--FYL 176
+ ++QVN E K G + F+ + + + GLM + P + + H F+
Sbjct: 117 VKCFLQVNISGEESKHGFSKEEALSFLQEANFTF-IEIVGLMTMAPITNSDIELHHVFHE 175
Query: 177 LSEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
L ++ +E T+LSMGMT D+ +AI GAT +R+G + +
Sbjct: 176 LKQLQQEIHALQLKNIPCTELSMGMTNDYGIAITEGATFIRVGRALVSD 224
>gi|295706359|ref|YP_003599434.1| hypothetical protein BMD_4254 [Bacillus megaterium DSM 319]
gi|294804018|gb|ADF41084.1| conserved hypothetical protein [Bacillus megaterium DSM 319]
Length = 227
Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 112/229 (48%), Gaps = 22/229 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ L+ +Q I + R ++ V L+AV+K V +K+ A+ G + EN+ +
Sbjct: 4 SVSENLEAVQQAIAEACKKVNRNREDVELIAVTKYVSTKRAAEAVDAGILHLGENRDEGL 63
Query: 62 KKKW--IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-R 118
+K+ I + W FIGSLQ+ KV ++ D I ++ R L+ E+ K++
Sbjct: 64 LEKYESIGEKATW----HFIGSLQTRKVKNVIDKVDYIHSLDRVS----LAKEIDKRAGH 115
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+ ++QVN E K G++ F+ + + V GLM + P + + F
Sbjct: 116 RIKCFVQVNVAEEQSKHGLVVEDVIPFIKSLEEFTNIQVVGLMTMAPHTDDESTLRSCFQ 175
Query: 176 LLSEIA---RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L ++ +E L T+LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 176 GLKKLQSRIQELNLPYAPCTELSMGMSNDYAIAIEEGATFIRLGTTLVG 224
>gi|116873461|ref|YP_850242.1| hypothetical protein lwe2045 [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742339|emb|CAK21463.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 229
Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 23/212 (10%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
+ R ++ V+LVAV+K +D+ I + G F EN+ +K I L + D+ +IG
Sbjct: 21 SNRQQEDVTLVAVTKTIDTAGITELYNLGIRHFGENRADVFLEKTIELADKEDICWHYIG 80
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRFLPVYIQVNTGYEIQKSGIMP 139
SLQ+ KV +++ D + ++ R S L+ E+ K+ ++ + ++QVN E K G
Sbjct: 81 SLQTRKVKDVLPKIDYLHSLDR----SSLAKEIEKRATKPVKCFLQVNISGEESKHGFSK 136
Query: 140 NQTKDFVILCRQKYQLN---VEGLMCIPPAMGNP-KPH--FYLLSEIARECKL------- 186
+ F+ Q+ N + GLM + P + + H F+ L ++ +E
Sbjct: 137 EEALSFL----QEADFNFIEIVGLMTMAPITNSDIELHHVFHELKQLQQEIHALQLKNIP 192
Query: 187 -TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
T+LSMGMT D+ +AI GAT +R+G + +
Sbjct: 193 CTELSMGMTNDYGIAITEGATFIRVGRALVND 224
>gi|311272383|ref|XP_003133416.1| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like isoform 1 [Sus scrofa]
Length = 234
Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 109/211 (51%), Gaps = 24/211 (11%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEA-KKKWIP--LRKEWDVQLRFIGSLQS-- 84
+ A SK + + A + GQ IF EN +QE +K P L +++ FIG LQ
Sbjct: 1 MSACSKTKPADMVIEAYNHGQRIFGENYVQELLEKASNPKILSSCPEIKWHFIGHLQKQN 60
Query: 85 -NKVSEIVSLFDVIETVSREKTASLLSLEMIKQS--RFLPVYIQVNTGYEIQKSGIMPNQ 141
NK+ + +LF ++ETV K A ++ K+ L V +QVNT E K G++P++
Sbjct: 61 VNKLMAVPNLF-MLETVDSMKLADKVNSSWQKKGSPERLKVMVQVNTSGEESKHGLLPSE 119
Query: 142 TKDFVILCRQKY-QLNVEGLMCIPPAMGN-----PKPHFYLLSEIARE-CK-------LT 187
T V + K L GLM I + G+ P P F +L + E C+
Sbjct: 120 TVAMVEHVKAKCPSLEFVGLMTIG-SFGHDLSQGPNPDFQVLVSLREELCQKLHIPVDQV 178
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ DF+ AI G+T+VRIGS IFGER
Sbjct: 179 ELSMGMSVDFQHAIEVGSTNVRIGSTIFGER 209
>gi|317503300|ref|ZP_07961351.1| proline synthetase associated protein [Prevotella salivae DSM
15606]
gi|315665579|gb|EFV05195.1| proline synthetase associated protein [Prevotella salivae DSM
15606]
Length = 224
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 101/214 (47%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
++ PK V LVA+SK + I A + GQ F E+ QE K+K L K D+Q F
Sbjct: 12 VIGNLPK-GVELVAISKYHPCEYIEAAYAEGQRRFGESHEQELKQKVEQLPK--DIQWHF 68
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NKV I +IE V K ++ + K R + V ++++ E K G+
Sbjct: 69 IGHLQTNKVKYIAPYISMIEAVDSLKLLKEINKQAAKHDRVIKVLLELHIAEEETKYGLT 128
Query: 139 PNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPK---PHF----YLLSEI-----AREC 184
+ + R+ + + GLM + N K F EI ++E
Sbjct: 129 IEDCRALLEEGTWRELEHVKICGLMMMASNTDNQKQIAAEFDTAKQFFDEIKNQYFSKEK 188
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ S GM+ D+++A+ G+T VR+G+ IFG R
Sbjct: 189 DFKECSWGMSHDYKIAVEHGSTMVRVGTTIFGPR 222
>gi|309801688|ref|ZP_07695808.1| pyridoxal phosphate enzyme, YggS family [Bifidobacterium dentium
JCVIHMP022]
gi|308221630|gb|EFO77922.1| pyridoxal phosphate enzyme, YggS family [Bifidobacterium dentium
JCVIHMP022]
Length = 276
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 98/238 (41%), Gaps = 39/238 (16%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE--------- 71
A R SV L+A +K D +I A+ G + EN+ QE K L K+
Sbjct: 37 AGREVGSVKLLAATKTRDVGEIMTAIDAGVRMIGENRPQEVTAKAEGLLKQCAQRGFTLG 96
Query: 72 ------------------WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
+ IG LQSNK+ +++ + + IE+V A +S
Sbjct: 97 AATAEVVAGGAVAGDADGTHIPFHLIGQLQSNKIGKVLPVVNTIESVDSVDLAEKISRRA 156
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP- 172
+ + + V ++VN E KSG P L ++GLM I + +
Sbjct: 157 VARGITVGVLLEVNESGEASKSGCDPAHAIRIAQKIGTLDGLELQGLMTIGAHVDDETTI 216
Query: 173 -----------HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L S+ + +LSMGMT D ELAIA G+T VR+G+ IFGER
Sbjct: 217 RKCFAHLRKTRDLILASKTPGTERCLELSMGMTGDMELAIAEGSTIVRVGTAIFGERA 274
>gi|46908267|ref|YP_014656.1| hypothetical protein LMOf2365_2063 [Listeria monocytogenes serotype
4b str. F2365]
gi|46881538|gb|AAT04833.1| conserved hypothetical protein TIGR00044 [Listeria monocytogenes
serotype 4b str. F2365]
Length = 229
Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 113/229 (49%), Gaps = 17/229 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQPEDVTLVAVTKTIDVAGITEFYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRF 119
++K + L + D+ +IGSLQ+ KV +++ D + ++ R S L+ E+ K+ ++
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDR----SSLAKEIEKRATKP 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-KPH--FYL 176
+ ++QVN E K G + F+ + + + GLM + P + + H F+
Sbjct: 117 VKCFLQVNISGEESKHGFSKEEALSFLQEANFTF-IEIVGLMTMAPITNSDIELHHVFHE 175
Query: 177 LSEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
L ++ +E T+LSMGMT D+ +AI GAT +R+G + +
Sbjct: 176 LKQLQQEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVGRALVSD 224
>gi|306824218|ref|ZP_07457588.1| YggS family pyridoxal phosphate enzyme [Bifidobacterium dentium
ATCC 27679]
gi|304552421|gb|EFM40338.1| YggS family pyridoxal phosphate enzyme [Bifidobacterium dentium
ATCC 27679]
Length = 319
Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 98/238 (41%), Gaps = 39/238 (16%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE--------- 71
A R SV L+A +K D +I A+ G + EN+ QE K L K+
Sbjct: 80 AGREVGSVKLLAATKTRDVGEIMTAIDAGVRMIGENRPQEVTAKAEGLLKQCAQRGFTLG 139
Query: 72 ------------------WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
+ IG LQSNK+ +++ + + IE+V A +S
Sbjct: 140 AATAEVVAGGAVAGDADGTHIPFHLIGQLQSNKIGKVLPVVNTIESVDSVDLAEKISRRA 199
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP- 172
+ + + V ++VN E KSG P L ++GLM I + +
Sbjct: 200 VARGITVGVLLEVNESGEASKSGCDPAHAIRIAQKIGTLDGLELQGLMTIGAHVDDETTI 259
Query: 173 -----------HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L S+ + +LSMGMT D ELAIA G+T VR+G+ IFGER
Sbjct: 260 RKCFAHLRKTRDLILASKTPGTERCLELSMGMTGDMELAIAEGSTIVRVGTAIFGERA 317
>gi|126649716|ref|ZP_01721952.1| hypothetical protein BB14905_16000 [Bacillus sp. B14905]
gi|126593435|gb|EAZ87380.1| hypothetical protein BB14905_16000 [Bacillus sp. B14905]
Length = 255
Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 106/209 (50%), Gaps = 24/209 (11%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R ++V ++AV+K V ++ + A+ G EN+ + +K ++ V +IGSL
Sbjct: 45 REANNVQIIAVTKEVSVERTQEAIEAGLTHLGENRPEGLNRKLSAIQAH--VNWHYIGSL 102
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSL-EMIKQSRFLPV--YIQVNTGYEIQKSGIMP 139
Q+ KV ++++ D + ++ R LSL E I++ PV +IQVN E K G+
Sbjct: 103 QTRKVKQVINSIDYLHSLDR------LSLAEEIEKRAVKPVKCFIQVNVSGEESKHGLSM 156
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK------------LT 187
+ FV + ++ V GLM + P + + ++ ++C+ T
Sbjct: 157 EEVLPFVESLKSFTKVEVVGLMTMAPNTEDEALIRTVFKQL-KQCQQQIAEQGFAHAPCT 215
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+LSMGM+ DFE+A+ GAT VR+G+ + G
Sbjct: 216 ELSMGMSNDFEIAVEEGATFVRVGTALVG 244
>gi|254459216|ref|ZP_05072638.1| conserved hypothetical protein TIGR00044 [Campylobacterales
bacterium GD 1]
gi|207084109|gb|EDZ61399.1| conserved hypothetical protein TIGR00044 [Campylobacterales
bacterium GD 1]
Length = 224
Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 103/197 (52%), Gaps = 13/197 (6%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V VA+SK + I + GQ F ENK+Q+ K K L +E ++ F+G+LQ NK+
Sbjct: 30 VKTVAISKYSTAADIAKLYNIGQRAFGENKVQDLKAKATEL-EELPLEWHFVGNLQKNKI 88
Query: 88 SEIV----SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQT 142
+ ++ +LF ++++ + A L ++ + L +Q+N+ E K G MP + +
Sbjct: 89 NNLLEINPTLFHALDSM---ELAEELQKKLEAKDMILDALLQINSAKEESKHGFMPEDAS 145
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-LTKLSMGMTRDFE 198
+ + + R+ +N++G+M I + K F EI + T SMGM+ DFE
Sbjct: 146 EAYARIQRECPNINLKGVMSIGAHSDDRDVIKKSFETTYEIYKNLDGATICSMGMSGDFE 205
Query: 199 LAIASGATSVRIGSGIF 215
LAI G+ VR+GS +F
Sbjct: 206 LAIECGSNMVRLGSIMF 222
>gi|148984102|ref|ZP_01817397.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
gi|147923391|gb|EDK74504.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
gi|301800476|emb|CBW33115.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141]
Length = 223
Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 111/227 (48%), Gaps = 17/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSANRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
+K+ L K+ DV IG+LQ KV +++ D + K A E+ K+S R
Sbjct: 61 FLEKYEAL-KDRDVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAG----EIQKRSDRV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ ++QVN E K G + + + + ++ GLM + P + K F
Sbjct: 116 IKCFLQVNISKEESKHGFSREELMEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKA 175
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 176 TQDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|221117858|ref|XP_002154810.1| PREDICTED: similar to proline synthetase co-transcribed
bacterial-like protein [Hydra magnipapillata]
Length = 174
Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 86/164 (52%), Gaps = 19/164 (11%)
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRF--LPVYIQVNT 128
D++ FIGSLQ NKV+ ++ + ++ + TV K A L K++ L V+IQVNT
Sbjct: 12 DIRWHFIGSLQRNKVNNLLDVENLFAVHTVGSIKLADALDKSWAKKNTGTQLNVFIQVNT 71
Query: 129 GYEIQKSGIMPNQ----TKDFVILCRQK--YQLNVEGLMCIPPAMGNPKPHFYLLS---- 178
E K G PN+ K + C+ Y L GL + G P P F LS
Sbjct: 72 SAEENKGGCEPNECVSLAKHILNSCKSLSLYGLMTIGLFDYDYSQG-PNPDFLCLSKCRQ 130
Query: 179 EIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ C + + LSMGM+ D++ AI++G+T VRIGS IFG R
Sbjct: 131 DVCTSCGIEENNLMLSMGMSNDYQEAISAGSTHVRIGSLIFGAR 174
>gi|124002828|ref|ZP_01687680.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
gi|123992056|gb|EAY31443.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
Length = 226
Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 102/224 (45%), Gaps = 23/224 (10%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
Q IEN I K + LVAVSK ++ I+ G F ENK+QE +K L K
Sbjct: 5 QNIEN--INTKLTPTNTKLVAVSKTKPAEMIQKTYDTGWRRFGENKVQEMVEKHEILPK- 61
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
D++ IG LQSNKV I +I V K ++ + K R + +Q++ E
Sbjct: 62 -DIEWHLIGHLQSNKVKYIAPFVSLIHGVDSMKLLKEINKQAAKNERVIQCLLQLHIAEE 120
Query: 132 IQKSGIMPNQTKDFVILCRQK-------YQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
K G+ + K+ IL Q+ + + V G+ + F L E
Sbjct: 121 DTKFGLSFAEAKE--ILASQELTTLKNVHVVGVMGMATFTDDKTQVRNEFRNLKTFFDEI 178
Query: 185 K----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K L ++SMGM+ D+E+AI G+T VR+GS IFG R
Sbjct: 179 KTEVGHLTNVDLQEVSMGMSGDYEIAIEEGSTMVRVGSAIFGTR 222
>gi|327473400|gb|EGF18820.1| cell division protein YlmE [Streptococcus sanguinis SK408]
Length = 223
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 21/229 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K V + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVGCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
K+ L+ E ++ IGSLQ KV ++++ D + K A E+ K++
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAK----EIDKRAEHV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPH---F 174
+ ++QVN E K G + + V+L + NV+ GLM + P + + F
Sbjct: 116 IKCFLQVNISKEESKHGFLVEDLE--VVLPELEKLENVQIVGLMTMAPFEASHEELNQIF 173
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 174 EKAHQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|319760385|ref|YP_004124323.1| pyridoxal phosphate enzyme [Candidatus Blochmannia vafer str. BVAF]
gi|318039099|gb|ADV33649.1| pyridoxal phosphate enzyme [Candidatus Blochmannia vafer str. BVAF]
Length = 237
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 104/225 (46%), Gaps = 19/225 (8%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK- 64
+L +I +A R ++ L+AV+K I+ ++ GQ F EN +QEA KK
Sbjct: 7 QLNHIHNQIHIAAHNVNRNPQNIQLIAVTKNQSINTIKKSIFYGQRNFGENYVQEALKKI 66
Query: 65 -W----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
W IP + W FIGS+QSNK+ I FD T+S EK+ L+ K+
Sbjct: 67 CWFRTHIPDKISW----HFIGSIQSNKIRIIAENFDWCHTISNEKSIYHLNKHRPKKLSQ 122
Query: 120 LPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKYQLNVEGL--MCIPPA-----MGNPK 171
L IQ+N KSGI+ Q Q +L + G+ M IP + M K
Sbjct: 123 LNTLIQINISGNHNKSGIITIEQMLKLATTIYQCSKLKLRGIMSMSIPKSEFKQQMIQFK 182
Query: 172 PHFYLLSEIAREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + C + LS+GM+ D AI SG+ +RIG+ IF
Sbjct: 183 KVYTFFKRLQNICPHVDTLSLGMSNDILPAIYSGSNLLRIGTSIF 227
>gi|163941640|ref|YP_001646524.1| hypothetical protein BcerKBAB4_3727 [Bacillus weihenstephanensis
KBAB4]
gi|163863837|gb|ABY44896.1| conserved hypothetical cytosolic protein [Bacillus
weihenstephanensis KBAB4]
Length = 224
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S + A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQGNLADVNEVIKESCVRAGRSMKDIKLVAVTKTVGIEKTSEVIETGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
+K+ + V FIGSLQ+ KV EI++ D + ++ R LSL Q R
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDR------LSLAKEIQKRAD 112
Query: 120 --LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP----- 172
+ +IQV T E K G+ +T F+ ++ ++ V GLM + P G +
Sbjct: 113 KKVKCFIQVKTSSEESKQGLAIEETIFFIQSLQELDKIEVVGLMTMAPFTGEEEEIRRCF 172
Query: 173 -HFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+L +E +L +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 173 KELRMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTVLVG 222
>gi|225718710|gb|ACO15201.1| Proline synthetase co-transcribed bacterial homolog protein
[Caligus clemensi]
Length = 248
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 105/212 (49%), Gaps = 19/212 (8%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGS 81
R K+ +L+AVSK + I A + GQ F EN +QE +K L ++ FIGS
Sbjct: 36 RSKNLPNLIAVSKTKPKENIIEAYNAGQRHFGENYVQELLEKSTELESTCPEISWHFIGS 95
Query: 82 LQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIKQSRFLP---VYIQVNTGYEIQKSG 136
LQS VS+++ + V+ T+S A L+ Q+R +P V +QVN E K G
Sbjct: 96 LQSKNVSKLLKVRNLSVLHTLSSRSLAD--KLQNATQARDIPSLSVLVQVNVSGEANKGG 153
Query: 137 IM--PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC--------KL 186
+ P + + +L+ GLM I A G K F + ++ R+ +
Sbjct: 154 VAFGPEVSALVSYILSSCPRLHFLGLMAIG-APGEEKADFSRMRDLRRDVAQEHGINEES 212
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LS+GM+ D E A+ G+T +R+G IFGER
Sbjct: 213 LRLSIGMSGDMETAVEYGSTDLRMGRQIFGER 244
>gi|332884068|gb|EGK04348.1| YggS family pyridoxal phosphate enzyme [Dysgonomonas mossii DSM
22836]
Length = 222
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 16/207 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
++V LVAVSK + I+ GQ +F E+++QE +K+ L + D++ FIG LQ+N
Sbjct: 16 ETVKLVAVSKFHPVEAIQKLYDTGQRVFGESRMQEVDQKYNKLPQ--DIEWHFIGHLQTN 73
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV I+ I +V K + + + ++ + ++++ E K G+ + +
Sbjct: 74 KVKAIIPYVHTIHSVDSWKLLQEIDKQATRVNKRICCLLEIHIAEEDSKYGLSFDACRQM 133
Query: 146 VI--LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK---------LTKLSM 191
+ L +Q + G+M + N + F L + K +++SM
Sbjct: 134 LNEGLWKQLKYAYIGGVMGMATFTDNVDLIRTEFRSLKLFYDKLKADYFQDFDSFSEISM 193
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D+E+A+ GAT VR+GS IFG+R
Sbjct: 194 GMSDDYEIAVEEGATIVRVGSSIFGQR 220
>gi|260578081|ref|ZP_05846003.1| alanine racemase, N- domain protein [Corynebacterium jeikeium ATCC
43734]
gi|258603821|gb|EEW17076.1| alanine racemase, N- domain protein [Corynebacterium jeikeium ATCC
43734]
Length = 251
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 92/207 (44%), Gaps = 16/207 (7%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF--IGSLQS 84
L+ ++K ++ +++ G EN+ QEA+ K L D LRF +G +Q+
Sbjct: 47 GADLLPITKFHPAEDVKLLAQLGVTAVGENREQEARDKHAQL---ADAGLRFHMVGQVQT 103
Query: 85 NKVSEIVSLFDVIETVSREK------TASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
K + + + TV K + L+LE + LPV +Q + + Q+ G +
Sbjct: 104 KKANSVARWAAAVHTVDSLKLLNALDRGAALALERGDRHERLPVLLQFSADGDPQRGGAV 163
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY----LLSEIA-RECKLTKLSMGM 193
+ L + GLM +PP +P F L+ IA R S GM
Sbjct: 164 EADIDELADAVAAAENLELRGLMTVPPLDADPAVVFARGRKLVERIADRAIGAPVYSAGM 223
Query: 194 TRDFELAIASGATSVRIGSGIFGERPC 220
+ D E+AIA G+T VR+G+ I G RP
Sbjct: 224 SGDLEIAIAEGSTLVRVGTDIMGARPV 250
>gi|119026489|ref|YP_910334.1| hypothetical protein BAD_1471 [Bifidobacterium adolescentis ATCC
15703]
gi|118766073|dbj|BAF40252.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
Length = 272
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 98/232 (42%), Gaps = 35/232 (15%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-------- 72
A R SV L+A +K D +I A+ G + EN+ QE K L +
Sbjct: 41 AGREAGSVRLLAATKTRDIGEIMAAIDAGVRMIGENRPQEVTAKAEGLARRCAERGFSLG 100
Query: 73 -----------DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ IG LQSNK+ +++ + D IE+V A +S + + +
Sbjct: 101 VAGAAPDAAAEHIPFHLIGQLQSNKIGKVLPVVDTIESVDSIDLAEKISRRAVARGITVG 160
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK------PHFY 175
V ++VN E KSG P + ++GLM I + + H
Sbjct: 161 VLLEVNESGEESKSGCDPAHAIRIAQKIGTLDGIELQGLMTIGAHVHDETVIRRGFSHLR 220
Query: 176 LLSEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ C+ +LSMGMT D ELAIA G+T VR+G+ IFGER
Sbjct: 221 KTRDLILASGEPGTDRCR--ELSMGMTGDMELAIAEGSTIVRVGTAIFGERA 270
>gi|322710536|gb|EFZ02110.1| alanine racemase family protein (ISS) [Metarhizium anisopliae ARSEF
23]
Length = 256
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 110/225 (48%), Gaps = 37/225 (16%)
Query: 28 VSLVAVSKMVDSKKIRVALS---CGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V LVAVSK+ + I +AL F EN QE +K L K +Q FIG LQS
Sbjct: 31 VRLVAVSKLKPANDI-LALHQAPASHRHFGENYTQELTQKAQLLPKT--IQWHFIGGLQS 87
Query: 85 NK---VSEIVSLFDVIETVSREKTASLLSL---EMIKQSRFLP---VYIQVNTGYEIQKS 135
+++I +LF + +V K A+LL+ ++ LP V++QVNT E KS
Sbjct: 88 GHCKTLAKIPNLF-CVSSVDTLKKAALLNTTRGALLASDPSLPKLSVHVQVNTSGEEAKS 146
Query: 136 GIMPNQTKDFVILCRQKY----QLNVEGLMCI-------PPAMGNPKPHFYLLSE----I 180
G P + + V LCR+ L++ GLM I N F L + +
Sbjct: 147 GCAPGE--ETVALCREIITNCPNLHLLGLMTIGAIARSKATTADNENDDFIALKQQRDLV 204
Query: 181 ARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
AR+ L +LSMGM+ DFE A+ G+ VR+GS IFG RP +
Sbjct: 205 ARQLALDDARLELSMGMSEDFEGAVVLGSGEVRVGSTIFGTRPAK 249
>gi|124023841|ref|YP_001018148.1| hypothetical protein P9303_21481 [Prochlorococcus marinus str. MIT
9303]
gi|123964127|gb|ABM78883.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
str. MIT 9303]
Length = 225
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 96/202 (47%), Gaps = 3/202 (1%)
Query: 20 LAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFI 79
L R D V L+AVSK + IR GQ F E++LQEA K L ++ FI
Sbjct: 10 LVDRLADGVHLLAVSKGHPATLIRQLAELGQQDFGESRLQEALPKLEDLADLKGLRWHFI 69
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G LQ+NKV +V F VI +V A ++ ++ V +QV + K G
Sbjct: 70 GRLQANKVRGVVRSFAVIHSVDSLALAERIARIAAEEQCCPQVMLQVKFRDDPSKGGFSQ 129
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECKLTKLSMGMTRD 196
Q K Q L + GLM + P ++ + F E+A + L SMGM+ D
Sbjct: 130 EQLKQAWPDLIQLSHLQLIGLMTMAPIGLSLEQRQELFRQCRELADQLGLPDCSMGMSGD 189
Query: 197 FELAIASGATSVRIGSGIFGER 218
+ A+ +GAT +R+GS +FG R
Sbjct: 190 WLEAMHAGATWLRLGSILFGAR 211
>gi|56808759|ref|ZP_00366476.1| COG0325: Predicted enzyme with a TIM-barrel fold [Streptococcus
pyogenes M49 591]
Length = 223
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 115/226 (50%), Gaps = 20/226 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L NK ++F + I S A R DSVS++AV+K VDS + G AEN++ +
Sbjct: 4 LTNKKKIF-ETIRLSTEAANRTNDSVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDKFL 62
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ L K V+ IG+LQ KV E+++ D + + L+LE+ K++ PV
Sbjct: 63 EKYDAL-KYMPVKWHLIGTLQRRKVKEVINYVDYFHALDSVR----LALEINKRADH-PV 116
Query: 123 --YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K G ++ + + + ++ + GLM + PA + + F
Sbjct: 117 KCFLQVNISKEESKHGFNISEIDEAIEEMGKMEKIQLVGLMTMAPANASKESIITIFRQA 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ + +L T+LSMGM+ D+ +AI G+T +RIG F
Sbjct: 177 NQLRKNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFF 222
>gi|327539691|gb|EGF26298.1| pyridoxal phosphate-dependent enzyme, YBL036C type [Rhodopirellula
baltica WH47]
Length = 253
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 108/220 (49%), Gaps = 17/220 (7%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
K + +A R DSV +V V+K VD++ + G EN+ Q + K+ L
Sbjct: 29 KSAVSETAQRCGRSPDSVRVVGVTKYVDAEITSWLVEAGCHDLGENRPQLLESKFQTLDD 88
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
+++ IG+LQ NKV ++ ++ ++ E+ + L E + QSR + I++N
Sbjct: 89 S-NIRWHQIGNLQRNKVRRLLPAEPLVHAIASERLLNALHNECLLQSRSIDGLIEINVSE 147
Query: 131 EIQKSGIMPNQTKDFVILCRQ-----KYQLNVEGLMCIPPAMGNPKP----HFYLLSEIA 181
E K+G+ +Q + ++ R+ LN+ GLM + G + F L E+
Sbjct: 148 EAAKTGLPIDQLEPLLVHWRELAGSSNAGLNITGLMAM-AGWGTDETAAARQFAKLRELR 206
Query: 182 RECK------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + L +LSMGM+ D+ AIA GAT VRIG+ +F
Sbjct: 207 DQMESPTGISLPELSMGMSGDYPAAIAEGATLVRIGTRLF 246
>gi|146318137|ref|YP_001197848.1| hypothetical protein [Streptococcus suis 05ZYH33]
gi|146320324|ref|YP_001200034.1| TIM-barrel fold family protein [Streptococcus suis 98HAH33]
gi|253751322|ref|YP_003024463.1| hypothetical protein SSUSC84_0419 [Streptococcus suis SC84]
gi|253753223|ref|YP_003026363.1| hypothetical protein SSU0435 [Streptococcus suis P1/7]
gi|253755046|ref|YP_003028186.1| hypothetical protein SSUBM407_0422 [Streptococcus suis BM407]
gi|145688943|gb|ABP89449.1| Predicted enzyme with a TIM-barrel fold [Streptococcus suis
05ZYH33]
gi|145691130|gb|ABP91635.1| Predicted enzyme with a TIM-barrel fold [Streptococcus suis
98HAH33]
gi|251815611|emb|CAZ51197.1| conserved hypothetical protein [Streptococcus suis SC84]
gi|251817510|emb|CAZ55254.1| conserved hypothetical protein [Streptococcus suis BM407]
gi|251819468|emb|CAR44987.1| conserved hypothetical protein [Streptococcus suis P1/7]
gi|292557895|gb|ADE30896.1| Predicted enzyme with a TIM-barrel fold [Streptococcus suis GZ1]
gi|319757607|gb|ADV69549.1| TIM-barrel fold family protein [Streptococcus suis JS14]
Length = 223
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 103/226 (45%), Gaps = 24/226 (10%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
NK +F + +A A RP +SV ++AV+K VDS ++ G EN++ + +K
Sbjct: 6 NKDAIF-SAVAKAAEKAGRPSESVKVIAVTKYVDSSIANQLVNTGITHIGENRVDQFLEK 64
Query: 65 WIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ L D QL IG+LQ KV +I+ D + K A + + ++ +
Sbjct: 65 YNALA---DKQLTWHLIGTLQRRKVKDIIPFVDYFHALDSVKLAQEIDK---RATKIVKC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPH---FYLL 177
++QVN E K G ++ L N+E GLM + P F +
Sbjct: 119 FLQVNVSGEESKHGFAVSEID--AALAEISLLENIELVGLMTMAPIDATDDELDEIFSKM 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
EI E T+LSMGM+ DFE AIA GAT VRIGS F
Sbjct: 177 QEIQEELATRNLPRMPFTELSMGMSGDFERAIAHGATYVRIGSAFF 222
>gi|255532810|ref|YP_003093182.1| alanine racemase domain-containing protein [Pedobacter heparinus
DSM 2366]
gi|255345794|gb|ACU05120.1| alanine racemase domain protein [Pedobacter heparinus DSM 2366]
Length = 229
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 116/234 (49%), Gaps = 29/234 (12%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L +K +++ + V L+AVSK ++ + A + GQ IF EN +QE
Sbjct: 1 MSIADNLLKYKSELDPAG---------VKLIAVSKYQEADAVLEAYNAGQRIFGENIVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + D++ IG LQ+NKV I +I++V K + ++ + K R +
Sbjct: 52 LVDKQAKLPQ--DIEWHLIGHLQTNKVKYIAPFISLIQSVDSLKLLAEINKQAAKNKRVI 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ----LNVEGLMCIPPAMGNPK---PH 173
+Q+ E K G+ ++ + +L ++++ + + G+M I K
Sbjct: 110 DCLLQIYIADEDTKFGLGFDEAIE--LLRSEEFEAMKNVRITGVMGIASNHALEKQTSDE 167
Query: 174 FYLLSEIARECKLT---------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F+ L + KL+ ++SMGM+ D++LA+ G+T VRIGS IFG+R
Sbjct: 168 FHELKVLFDGIKLSFFRKTAHFKEISMGMSGDYKLAVEQGSTMVRIGSSIFGKR 221
>gi|19746469|ref|NP_607605.1| hypothetical protein spyM18_1536 [Streptococcus pyogenes MGAS8232]
gi|71903849|ref|YP_280652.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS6180]
gi|94990773|ref|YP_598873.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS10270]
gi|94994751|ref|YP_602849.1| Pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS10750]
gi|139473459|ref|YP_001128175.1| hypothetical protein SpyM50604 [Streptococcus pyogenes str.
Manfredo]
gi|209559683|ref|YP_002286155.1| hypothetical protein Spy49_1172c [Streptococcus pyogenes NZ131]
gi|306827035|ref|ZP_07460333.1| YggS family pyridoxal phosphate enzyme [Streptococcus pyogenes ATCC
10782]
gi|19748673|gb|AAL98104.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|71802944|gb|AAX72297.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS6180]
gi|94544281|gb|ABF34329.1| Pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS10270]
gi|94548259|gb|ABF38305.1| Pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS10750]
gi|134271706|emb|CAM29939.1| conserved hypothetical protein [Streptococcus pyogenes str.
Manfredo]
gi|209540884|gb|ACI61460.1| hypothetical protein Spy49_1172c [Streptococcus pyogenes NZ131]
gi|304430781|gb|EFM33792.1| YggS family pyridoxal phosphate enzyme [Streptococcus pyogenes ATCC
10782]
Length = 223
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 115/226 (50%), Gaps = 20/226 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L NK ++F + I S A R DSVS++AV+K VDS + G AEN++ +
Sbjct: 4 LTNKKKIF-ETIRLSTEAANRTNDSVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDKFL 62
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ L K V+ IG+LQ KV E+++ D + + L+LE+ K++ PV
Sbjct: 63 EKYDAL-KYMPVKWHLIGTLQRRKVKEVINYVDYFHALDSVR----LALEINKRADH-PV 116
Query: 123 --YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K G ++ + + + ++ + GLM + PA + + F
Sbjct: 117 KCFLQVNISKEESKHGFNISEIDEAIEEIGKMEKIQLVGLMTMAPANASKESIITIFRQA 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ + +L T+LSMGM+ D+ +AI G+T +RIG F
Sbjct: 177 NQLRKNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFF 222
>gi|328858513|gb|EGG07625.1| hypothetical protein MELLADRAFT_62402 [Melampsora larici-populina
98AG31]
Length = 262
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 111/227 (48%), Gaps = 40/227 (17%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCG--QVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSL 82
+V LVAVSK+ + I + L G + F EN + E K K +P D++ FIG+L
Sbjct: 37 NVRLVAVSKLKPASDI-LGLYEGIQHLHFGENYVSELVEKAKLLP----QDIKWHFIGAL 91
Query: 83 QSNK---VSEIVSLFDVIETVSREKTASLL--SLEMIKQSRFLPV-----YIQVNTGYEI 132
Q+NK + I +LF +ETV K A L S + Q+ P+ YIQ+NT E+
Sbjct: 92 QTNKCKILGSIPNLF-AVETVDTIKKAEALNKSRSQLSQTSCNPIAKLKIYIQINTSNEL 150
Query: 133 QKSGIMPNQ-----TKDFVILCRQKYQ----LNVEGLMCI-----PPAMGNPKPHFYLLS 178
KSGI Q T + ++L + L + GLM I + F+ L
Sbjct: 151 NKSGIKVEQESIEDTSELILLSNYIKEDCESLELSGLMTIGSFKESTTDSDFNEDFHRLI 210
Query: 179 EIAR------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+I K LSMGM+ DF LAI G+ +VR+GS IFGERP
Sbjct: 211 KIRNLLEDKIGIKPLGLSMGMSSDFSLAIRMGSDNVRVGSKIFGERP 257
>gi|320528155|ref|ZP_08029320.1| pyridoxal phosphate enzyme, YggS family [Solobacterium moorei
F0204]
gi|320131503|gb|EFW24068.1| pyridoxal phosphate enzyme, YggS family [Solobacterium moorei
F0204]
Length = 218
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 14/204 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+ L VSK ++I+ G+ IFAEN+ E K L K D+ +IG LQ NK
Sbjct: 15 DIDLCVVSKHHSIEEIQSYYDAGERIFAENRATELIFKAGTLPK--DIAWHYIGHLQRNK 72
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE-IQKSGIMPNQTKDF 145
V EI+ + I+++ A ++ E K +R + V I+++ E KSG+ P F
Sbjct: 73 VKEILPIVSCIQSLDNIALAKVIEKEATKLNRTVNVLIELHLADEDTNKSGLDPADVDMF 132
Query: 146 V-ILCRQKYQLNVEGLMCIPP----------AMGNPKPHFYLLSEIARECKLTKLSMGMT 194
L ++ ++++GLM + P + F L E + LSMGM+
Sbjct: 133 TNFLLQECPHISIQGLMTMGPHTEDTARIHEVFAKAQDIFKHLQETFGKQYFHTLSMGMS 192
Query: 195 RDFELAIASGATSVRIGSGIFGER 218
D+ +AI G+T +RIG+ +F E
Sbjct: 193 HDYPIAIEHGSTMLRIGTYLFEEN 216
>gi|15675419|ref|NP_269593.1| hypothetical protein SPy_1519 [Streptococcus pyogenes M1 GAS]
gi|71911061|ref|YP_282611.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS5005]
gi|13622607|gb|AAK34314.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|71853843|gb|AAZ51866.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS5005]
Length = 223
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 115/226 (50%), Gaps = 20/226 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L NK ++F + I S A R DSVS++AV+K VDS + G AEN++ +
Sbjct: 4 LTNKKKIF-ETIRLSTEAANRTNDSVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDKFL 62
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ L K V+ IG+LQ KV E+++ D + + L+LE+ K++ PV
Sbjct: 63 EKYDAL-KYMPVKWHLIGTLQRRKVKEVINYVDYFHALDSVR----LALEINKRADH-PV 116
Query: 123 --YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G ++ + + + ++ + GLM + PA + + F
Sbjct: 117 KCFLQVNISKEESKHGFNISEIDEAIGEIGKMEKIQLVGLMTMAPANASKESIITIFRQA 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ + +L T+LSMGM+ D+ +AI G+T +RIG F
Sbjct: 177 NQLRKNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFF 222
>gi|169629098|ref|YP_001702747.1| hypothetical protein MAB_2011 [Mycobacterium abscessus ATCC 19977]
gi|169241065|emb|CAM62093.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length = 239
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 12/221 (5%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
++++ +A +A R + L+ V+K + + G F E++ QEA K L +
Sbjct: 15 RERVRRAAEIAGRDPGEIQLLPVTKFFPASDVEELYRLGCREFGESRDQEAAAKVALLDQ 74
Query: 71 --EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP--VYIQV 126
D++ +G+LQ NK + + +V + + L + P +Y+QV
Sbjct: 75 AGHADIRWHMVGNLQRNKAKSVAHWAHSVHSVDNARLVTALDGARGAGEKREPLGIYLQV 134
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQ---KYQLNVEGLMCIPPAMGNPKPHFYLLSEIA-- 181
+ + + G+ + LC Q L + GLM +PP +P F L +
Sbjct: 135 SLDGDNARGGVDIAAADEIDQLCAQVVASEHLELAGLMALPPREADPDQAFRRLQQEHER 194
Query: 182 ---RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
R + +LS GM+ D E AI G+T VR+G+ + G+RP
Sbjct: 195 VRDRYPQANRLSAGMSNDLEAAIKYGSTCVRVGTALMGQRP 235
>gi|281420372|ref|ZP_06251371.1| pyridoxal phosphate enzyme, YggS family [Prevotella copri DSM
18205]
gi|281405517|gb|EFB36197.1| pyridoxal phosphate enzyme, YggS family [Prevotella copri DSM
18205]
Length = 224
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 16/205 (7%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V LVA+SK ++ I A + GQ IF E+ QE KK L + D++ FIG LQ+NKV
Sbjct: 20 VRLVAISKFHPNEYIEEAYAEGQRIFGESHEQELAKKVASLPE--DIEWHFIGHLQTNKV 77
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
I +IE+V K + + K R + V ++++ E KSG+ + ++ +
Sbjct: 78 KYIAPYISMIESVDSLKLLKEIEKQAAKHDRVVKVLLELHLAEEDTKSGLSLDACRELLE 137
Query: 148 L--CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR------------ECKLTKLSMGM 193
R+ + + G+M + + + E AR + + S GM
Sbjct: 138 AGEWREMKHVQICGIMMMASNTDDEQQIAQEFDEAARFFDEIKARYFADDEAFCERSWGM 197
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D+ +A+ G+T VR+G+ IFG R
Sbjct: 198 SHDYHIAVKHGSTMVRVGTTIFGPR 222
>gi|303255986|ref|ZP_07342014.1| hypothetical protein CGSSpBS455_10830 [Streptococcus pneumoniae
BS455]
gi|302597045|gb|EFL64163.1| hypothetical protein CGSSpBS455_10830 [Streptococcus pneumoniae
BS455]
Length = 223
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 17/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
+K+ L K DV IG+LQ KV +++ D + K A E+ K+S R
Sbjct: 61 FLEKYEAL-KARDVAWHLIGTLQRRKVKDVIQFVDYFHALDSVKLAG----EIQKRSDRV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ ++QVN E K G + D + + ++ GLM + P + K F
Sbjct: 116 IKCFLQVNISKEESKHGFSREELLDILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKA 175
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 176 TQDLQKEIQEEQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|229006183|ref|ZP_04163869.1| hypothetical protein bmyco0002_31030 [Bacillus mycoides Rock1-4]
gi|228755024|gb|EEM04383.1| hypothetical protein bmyco0002_31030 [Bacillus mycoides Rock1-4]
Length = 224
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 20/229 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L +KI+ + A+R V LVAV+K V +K + G EN+ +
Sbjct: 1 MVVQENLAFVNEKIKIACERAERSAQEVKLVAVTKTVGIEKTNEVIEAGLTDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + V FIGSLQ+ KV EI++ D + ++ R A + KQ R
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRISLAKEIQKRTTKQVR-- 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLL 177
++QV T E K GI +T F+ ++ ++ V GLM + P + F L
Sbjct: 117 -CFVQVKTSSEESKQGIAAEETIAFIRALQEFDKIEVVGLMTMAPFTEEEAEIRHCFKKL 175
Query: 178 SEIARE----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ ++ CK +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 176 RGLQKQVQELGLSYAPCK--ELSMGMSNDYTIAIEEGATYIRLGTILVG 222
>gi|254431565|ref|ZP_05045268.1| conserved hypothetical protein TIGR00044 [Cyanobium sp. PCC 7001]
gi|197626018|gb|EDY38577.1| conserved hypothetical protein TIGR00044 [Cyanobium sp. PCC 7001]
Length = 220
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 101/209 (48%), Gaps = 6/209 (2%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
AI A+ P S L+AVSK + IR A++ GQ F E++LQEA K L +
Sbjct: 3 AIRAQLPP-SCRLLAVSKGHPAAAIRAAVAAGQRSFGESRLQEAMAKQDALADLGPLDWH 61
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
FIG LQ+NK ++ F I ++ A L+ ++ R V QV + K+G
Sbjct: 62 FIGRLQANKARGVLRRFGTIHSLDSVALAQRLARIAAEEERSPAVLFQVKFRPDPAKTGF 121
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMG----NPKPHFYLLSEIARECKLTKLSMGM 193
P + L GLM I P MG + F + +A E L + SMGM
Sbjct: 122 EPEALRARWQELSALPALRPVGLMTIAP-MGLEAAERRALFQECAALAAELGLPERSMGM 180
Query: 194 TRDFELAIASGATSVRIGSGIFGERPCQT 222
+ D+ A+ +G+T VR+GS +FG+RP Q
Sbjct: 181 SGDWPEAVTAGSTWVRLGSSLFGDRPSQN 209
>gi|223933926|ref|ZP_03625887.1| alanine racemase domain protein [Streptococcus suis 89/1591]
gi|302023462|ref|ZP_07248673.1| hypothetical protein Ssui0_02136 [Streptococcus suis 05HAS68]
gi|330832328|ref|YP_004401153.1| alanine racemase domain-containing protein [Streptococcus suis ST3]
gi|223897403|gb|EEF63803.1| alanine racemase domain protein [Streptococcus suis 89/1591]
gi|329306551|gb|AEB80967.1| alanine racemase domain protein [Streptococcus suis ST3]
Length = 223
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 103/226 (45%), Gaps = 24/226 (10%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
NK +F + +A A RP +SV ++AV+K VDS ++ G EN++ + +K
Sbjct: 6 NKDAIF-SAVAKAAEKAGRPSESVKVIAVTKYVDSSIANQLVNTGITHIGENRVDQFLEK 64
Query: 65 WIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ L D QL IG+LQ KV +I+ D + K A + + ++ +
Sbjct: 65 YNALA---DKQLTWHLIGTLQRRKVKDIIPFVDYFHALDSVKLAQEIDK---RATKIVKC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNPKPH---FYLL 177
++QVN E K G ++ L N+E GLM + P F +
Sbjct: 119 FLQVNVSGEESKHGFAVSEID--AALAEISLLENIELVGLMTMAPIDATDDELDEIFSKI 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
EI E T+LSMGM+ DFE AIA GAT VRIGS F
Sbjct: 177 QEIQEELATRNLPRMPFTELSMGMSGDFERAIAHGATYVRIGSAFF 222
>gi|296273661|ref|YP_003656292.1| alanine racemase domain-containing protein [Arcobacter nitrofigilis
DSM 7299]
gi|296097835|gb|ADG93785.1| alanine racemase domain protein [Arcobacter nitrofigilis DSM 7299]
Length = 226
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 106/199 (53%), Gaps = 15/199 (7%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V ++A+SK S+++ GQ + ENK+Q+ K+K L +E ++ F+G LQ NK+
Sbjct: 31 VKIIAISKYSLSEEVATLYGAGQRAYGENKVQDLKEKMEKL-EELPLEWHFVGRLQKNKI 89
Query: 88 SEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT---- 142
+ ++ L +++++ A + ++ +++ + +Q+N+ YE K+G+MP +
Sbjct: 90 NNLIDLNPTLVQSIDSLDLAIEFNKKLAAKNKKINALLQINSAYEESKAGVMPEEAIETY 149
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK---LTKLSMGMTRD 196
K + C +N++G+M I + + K F +I E SMGM+ D
Sbjct: 150 KKIIDTCAN---INLKGVMSIGAHVADEDIIKKSFETTKKIFDELAPLGAKYCSMGMSGD 206
Query: 197 FELAIASGATSVRIGSGIF 215
FELAI+ G+ +R+GS +F
Sbjct: 207 FELAISCGSNMIRVGSSLF 225
>gi|261879479|ref|ZP_06005906.1| K+ uptake protein [Prevotella bergensis DSM 17361]
gi|270333904|gb|EFA44690.1| K+ uptake protein [Prevotella bergensis DSM 17361]
Length = 224
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 104/216 (48%), Gaps = 21/216 (9%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+L P + V LVA+SK ++ I A + GQ IF E++ QE + K L K D+Q F
Sbjct: 12 VLGNLP-EGVQLVAISKFHPNEYIEAAYAAGQRIFGESREQELRLKAEQLPK--DIQWHF 68
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ NKV I +IE+V K ++ + K +R + + ++++ E K G
Sbjct: 69 IGHLQGNKVKSIAPYISMIESVDTFKLMKEINKQAEKNNRVIDILLELHVADEETKFGFS 128
Query: 139 PNQTKDFV--ILCRQKYQLNVEGLMCIPPAMG---------NPKPHFYLLSEIAREC--- 184
+ + L +Q + + GLM + + N F+ E+ R+
Sbjct: 129 FEACRSMLAEALWKQMANIRIRGLMMMASNVEDENQIASEMNKAADFF--DEVKRDYFAD 186
Query: 185 --KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ S GM+ D+++A+ +T VR+G+ IFG R
Sbjct: 187 ADYFSERSWGMSHDYQIAVKCRSTMVRVGTTIFGAR 222
>gi|42782993|ref|NP_980240.1| hypothetical protein BCE_3945 [Bacillus cereus ATCC 10987]
gi|42738920|gb|AAS42848.1| conserved hypothetical protein TIGR00044 [Bacillus cereus ATCC
10987]
Length = 224
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 108/230 (46%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQTNLTTVNESIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
+K+ + V FIGSLQ+ KV EI++ D + ++ R LSL Q R
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDR------LSLAKEIQKRAD 112
Query: 120 --LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP----- 172
+ +IQV T E K G+ +T F+ ++ ++ V GLM + P K
Sbjct: 113 KKVKCFIQVKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEKEIRRCF 172
Query: 173 -HFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+L +E +L +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 173 KTLRMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVG 222
>gi|307721258|ref|YP_003892398.1| alanine racemase domain-containing protein [Sulfurimonas
autotrophica DSM 16294]
gi|306979351|gb|ADN09386.1| alanine racemase domain protein [Sulfurimonas autotrophica DSM
16294]
Length = 224
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 102/201 (50%), Gaps = 19/201 (9%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---EWDVQLRFIGSLQS 84
V +VAVSK ++ I+ + GQ F ENK+Q+ K K L EW FIG+LQ
Sbjct: 30 VKIVAVSKYSTAEDIKRLYNIGQRAFGENKVQDLKAKAKELEDLPLEW----HFIGNLQK 85
Query: 85 NKVSEIV----SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
NK++ ++ SLF ++++ + A L ++ ++ L +Q+N+ E K G MP
Sbjct: 86 NKINNLLDINPSLFQALDSL---ELAEELQKKLKAKNMTLECLMQINSAKEESKHGFMPE 142
Query: 141 QT-KDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAREC-KLTKLSMGMTR 195
T + + + +N++G+M I + K F I ++ T SMGM+
Sbjct: 143 DTISAYTQIISECPNINLKGVMSIGAHSDDKQVVKKSFETTHAIYKQLPNATICSMGMSG 202
Query: 196 DFELAIASGATSVRIGSGIFG 216
DFELAI G+ VR+GS +F
Sbjct: 203 DFELAIECGSNMVRLGSIMFN 223
>gi|261187897|ref|XP_002620366.1| alanine racemase [Ajellomyces dermatitidis SLH14081]
gi|239593483|gb|EEQ76064.1| alanine racemase [Ajellomyces dermatitidis SLH14081]
gi|239608462|gb|EEQ85449.1| alanine racemase [Ajellomyces dermatitidis ER-3]
gi|327356074|gb|EGE84931.1| alanine racemase [Ajellomyces dermatitidis ATCC 18188]
Length = 297
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 108/239 (45%), Gaps = 45/239 (18%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVI-FAENKLQEAKKKWIPLRK-EWDVQLRFI 79
+RP+ V L+AVSK+ + +++ + F EN QE +K L+ +V+ FI
Sbjct: 50 QRPQRPVRLLAVSKIKPASDVQILHEHNPTLHFGENYFQELLEKSRALKALSPEVRWHFI 109
Query: 80 GSLQSNK----VSEIVSLFDVIETVSREKTASLLS-----------LEMIKQSRFLPVYI 124
G LQSNK ++ LF +E+V EK A+LL+ L VY+
Sbjct: 110 GGLQSNKCVSLARDVPGLF-AVESVDTEKKANLLNRGWGERLAAAGDADADAENRLRVYV 168
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQ----LNVEGLMCI-------PPAMGNPKPH 173
QVNT E KSG+ P + LCR + L + GLM I + N
Sbjct: 169 QVNTSGEANKSGVEPVEA---TRLCRHIRENCPRLKLVGLMTIGALARSQATTLENENED 225
Query: 174 FYLLSEIARECK-------------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L E + +LSMGMT+D+E AI G+ VR+G+ IFG RP
Sbjct: 226 FLCLRETRDRVEKELGLAGEDGEGEGLELSMGMTQDYEGAIKMGSDQVRVGAEIFGPRP 284
>gi|257784296|ref|YP_003179513.1| alanine racemase domain-containing protein [Atopobium parvulum DSM
20469]
gi|257472803|gb|ACV50922.1| alanine racemase domain protein [Atopobium parvulum DSM 20469]
Length = 244
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 101/214 (47%), Gaps = 13/214 (6%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW- 72
+ ++A + R + +VAVSK V + + A G +F EN+ QE K L +
Sbjct: 23 VADAAKKSGRSASEIEIVAVSKTVPVEAVLAAYKAGYRVFGENRPQELTHKLTCLSETSF 82
Query: 73 --DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
++ IG+LQ NK++++V I ++S E A +S + V ++VN
Sbjct: 83 GSEITFDMIGNLQKNKINQVVGKVRYIHSISSEHLAEAVSKRAEAKGSQESVLLEVNVSA 142
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE---- 183
E KSG P + + + + ++V GLM + P +P K F L E+
Sbjct: 143 EASKSGFSPEEVSESIQKVVELSHISVVGLMTMAP-RDDPERAKRTFAGLRELRDRLSQQ 201
Query: 184 --CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
KL LS GM+ DF AI G+T++R+G +F
Sbjct: 202 VGLKLDVLSCGMSDDFTYAIEEGSTTIRLGRILF 235
>gi|312947482|gb|ADR28309.1| putative enzyme [Escherichia coli O83:H1 str. NRG 857C]
Length = 169
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 78/160 (48%), Gaps = 20/160 (12%)
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
EW FIG LQSNK + FD T+ R + A+ L+ + + L V IQ+N
Sbjct: 13 EW----HFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISD 68
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC------ 184
E KSGI + + + +L + GLM IP P+ + E+AR+
Sbjct: 69 ENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPA----PESEYVRQFEVARQMAVAFAG 124
Query: 185 ------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 125 LKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 164
>gi|320592368|gb|EFX04807.1| alanine racemase family [Grosmannia clavigera kw1407]
Length = 287
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 118/269 (43%), Gaps = 62/269 (23%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCG---QVIFAENKLQ 59
L +Q +++I +A A RP V LVAVSK+ + I VAL G QV F EN Q
Sbjct: 20 LAANIQAVQERIAAAA--AGRP---VRLVAVSKLKPANDI-VALHEGPAKQVHFGENYAQ 73
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLL-------- 109
E + K + L + +Q FIG LQS + + ++ + ++ K A LL
Sbjct: 74 ELRDKAVLLPRS--IQWHFIGGLQSGHCKGLARIPNLWCVSSIDSAKKAKLLEAARAAFV 131
Query: 110 ----SLEMIKQSRFLP---VYIQVNTGYEIQKSGIMPNQTKDFVILCR----QKYQLNVE 158
+L S LP V++QVNT E KSG P D V LCR + L +
Sbjct: 132 REQQTLSSSSSSSVLPPIHVHVQVNTSGEESKSGCAPGD--DTVALCRTIVDECPHLRLL 189
Query: 159 GLMCIPP------------AMGNPKPHFYLLSE--------IARECKLT--------KLS 190
GLM I A G P F L E + T +LS
Sbjct: 190 GLMTIGAIARSRATDADAAAAGIENPDFVALREQRDLVQAALPMSTSTTDQPAAGPLELS 249
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERP 219
MGM+ DF AI SG+ VR+GS IFG RP
Sbjct: 250 MGMSDDFVGAITSGSGEVRVGSTIFGLRP 278
>gi|257463045|ref|ZP_05627447.1| proline synthetase associated protein [Fusobacterium sp. D12]
gi|317060649|ref|ZP_07925134.1| proline synthetase associated protein [Fusobacterium sp. D12]
gi|313686325|gb|EFS23160.1| proline synthetase associated protein [Fusobacterium sp. D12]
Length = 226
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 105/207 (50%), Gaps = 21/207 (10%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW-----IPLRK--EWDVQLRF 78
+ V ++AVSK ++++++ L G V EN+ Q ++K+ P K EW F
Sbjct: 23 EKVKVIAVSKYLNAEEMLPYLETGIVTLGENRAQVIQEKYELLSSYPFAKSLEW----HF 78
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG+LQ NKV IV +I +V++ A ++ +M +R +PV I+VN E K G
Sbjct: 79 IGNLQKNKVKYIVDKVAMIHSVNKLSLAEEINKKMGSLNRKMPVLIEVNVSGEESKEGYD 138
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIAREC-------KLTK 188
+ + + + + + GLM + P + + F L + E KLT+
Sbjct: 139 VLEAEQDIPALLKLENIRICGLMTMAPFTEDAEEQRKVFRKLRILKEEWNKKYFQDKLTE 198
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIF 215
LSMGM+ D+++A+ GAT +R+G IF
Sbjct: 199 LSMGMSNDYKIALQEGATMIRLGRKIF 225
>gi|223040193|ref|ZP_03610472.1| pyridoxal phosphate enzyme, YggS family [Campylobacter rectus
RM3267]
gi|222878554|gb|EEF13656.1| pyridoxal phosphate enzyme, YggS family [Campylobacter rectus
RM3267]
Length = 211
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 114/223 (51%), Gaps = 27/223 (12%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
KL ++IEN+ R ++V L+AVSK V +K++ GQ F EN++QE K K
Sbjct: 2 KLAQILERIENA-----RTGEAVKLIAVSKNVTTKEVLELFEQGQTSFGENRVQELKNKS 56
Query: 66 IPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLP 121
L EW FIG LQSNK++ +++L + ++ + A + +I + LP
Sbjct: 57 EILSNLPIEW----HFIGRLQSNKINHLLALKPALWQSCESVEAALAVDKRLICE---LP 109
Query: 122 VYIQVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
+Q+N+ +E K GI P +D F+ + ++ L G+M I + + F
Sbjct: 110 CLLQINSAHEDTKQGISPEAAQDAFLQIAQECKFLKPIGVMSIGAHAIDERVVQKSFETT 169
Query: 178 SEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+I R K+ SMGM+ DFELAI SG+ +R+GS ++
Sbjct: 170 RKIYENLQPRGAKIC--SMGMSGDFELAIKSGSNMIRLGSILY 210
>gi|149021241|ref|ZP_01835487.1| ylmE protein [Streptococcus pneumoniae SP23-BS72]
gi|225861493|ref|YP_002743002.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
Taiwan19F-14]
gi|307127875|ref|YP_003879906.1| hypothetical protein SP670_1752 [Streptococcus pneumoniae 670-6B]
gi|147930342|gb|EDK81326.1| ylmE protein [Streptococcus pneumoniae SP23-BS72]
gi|225726653|gb|ACO22504.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
Taiwan19F-14]
gi|306484937|gb|ADM91806.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B]
gi|327389851|gb|EGE88196.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae GA04375]
gi|332072833|gb|EGI83314.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae GA17545]
Length = 223
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 111/227 (48%), Gaps = 17/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
+K+ L K+ DV IG+LQ KV +I+ D + K A E+ K+S R
Sbjct: 61 FLEKYEAL-KDRDVTWHLIGTLQRRKVKDIIQYVDYFHALDSVKLAG----EIQKRSDRV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ ++QVN E K G + + + + ++ GLM + P + K F
Sbjct: 116 IKCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKA 175
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 176 AQDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|325962954|ref|YP_004240860.1| hypothetical protein Asphe3_15570 [Arthrobacter phenanthrenivorans
Sphe3]
gi|323469041|gb|ADX72726.1| conserved hypothetical protein TIGR00044 [Arthrobacter
phenanthrenivorans Sphe3]
Length = 244
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 102/232 (43%), Gaps = 17/232 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L + +I ++A A R +L+ V+K + IR S G EN+ QEA
Sbjct: 14 LAGRLTAVQGRISSAAAAAGRVGPLPTLIVVTKFHPAGDIRRLASLGVTDVGENRDQEAA 73
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR----EKTASLLSLEMIKQSR 118
K L + + F+G LQ+ K + + +V R E A + E + R
Sbjct: 74 AKAE-LLADCGLTWHFVGQLQTKKAKSVARYASAVHSVDRLQLVEALAKAVQKEQERTGR 132
Query: 119 -----FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH 173
F+ V ++ + G + G MP + L + G+M + P P+P
Sbjct: 133 APLDCFIQVSLEDDAG--THRGGAMPAEVPLLADAIAAAEGLRLAGVMAVAPLGAPPEPA 190
Query: 174 FYLLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L+ + A+ T +S GM++D E AIA GAT +RIGS I G RP
Sbjct: 191 FEKLAGVSAQLVAQHPAATAISAGMSQDLEAAIAFGATHLRIGSDILGSRPA 242
>gi|312196226|ref|YP_004016287.1| alanine racemase [Frankia sp. EuI1c]
gi|311227562|gb|ADP80417.1| alanine racemase domain protein [Frankia sp. EuI1c]
Length = 291
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 102/266 (38%), Gaps = 57/266 (21%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +++I +A A R ++LVAVSK + + V G FAEN+ QEA +K
Sbjct: 26 NLGDVRERITAAARAAGRDPAELTLVAVSKTWPAADVVVLRGLGVTHFAENREQEAARKV 85
Query: 66 IPLRKE---------------------------------------WDVQLRFIGSLQSNK 86
+ + W ++G LQ NK
Sbjct: 86 VEVHARLGLLPAGANGVAAGSGLAADAGRGGDSCHAGTSGTDGTIW----HYVGQLQRNK 141
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV---------NTGYEIQKSGI 137
+ + D ++ V R + + L+ R L V +QV N + G
Sbjct: 142 ANAVARWADWVQCVDRPELVASLARAAATAGRELTVCLQVSLDTSPGGPNGAPTAGRGGA 201
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK-----LSMG 192
P L L + G+M + P P+P F L E+A + +S G
Sbjct: 202 APADVPGLADLVAAAGWLRLAGVMAVAPRGQPPRPAFARLREVAERLRQIHPDACVISAG 261
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D E A+A GAT +RIG+ +FGER
Sbjct: 262 MSGDLEAAVAEGATHLRIGTALFGER 287
>gi|307705385|ref|ZP_07642244.1| conserved hypothetical protein [Streptococcus mitis SK597]
gi|307621048|gb|EFO00126.1| conserved hypothetical protein [Streptococcus mitis SK597]
Length = 223
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 110/227 (48%), Gaps = 17/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVNK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
+K+ L K DV IG+LQ KV +++ D + K A E+ K+S R
Sbjct: 61 FLEKYEAL-KNRDVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAE----EIQKRSDRV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ +IQVN E K G + + + + ++ GLM + P + K F
Sbjct: 116 IKCFIQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKA 175
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 176 TQDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTAFF 222
>gi|254831727|ref|ZP_05236382.1| hypothetical protein Lmon1_10248 [Listeria monocytogenes 10403S]
Length = 229
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 112/229 (48%), Gaps = 17/229 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE+ + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIEHVCEESNRQSEDVTLVAVTKTIDVTGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRF 119
+K + L + D+ +IGSLQ+ KV +++ D + ++ R S L+ E+ K+ ++
Sbjct: 61 FLEKTVELADKDDICWHYIGSLQTRKVKDVLPQIDYLHSLDR----SSLAKEIEKRATKP 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-KPH--FYL 176
+ ++QVN E K G + F+ + + + GLM + P + + H F+
Sbjct: 117 VKCFLQVNISGEESKHGFSKEEALSFLQEANFTF-IEIVGLMTMAPITNSDIELHHVFHE 175
Query: 177 LSEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
L ++ +E T+LSMGMT D+ +AI GAT +R+G + +
Sbjct: 176 LKQLQQEIHALQLKNIPCTELSMGMTNDYGIAITEGATFIRVGRALVND 224
>gi|228992635|ref|ZP_04152561.1| hypothetical protein bpmyx0001_33740 [Bacillus pseudomycoides DSM
12442]
gi|228766967|gb|EEM15604.1| hypothetical protein bpmyx0001_33740 [Bacillus pseudomycoides DSM
12442]
Length = 222
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 106/223 (47%), Gaps = 20/223 (8%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +KI+ + A+R V LVAV+K V +K + G EN+ + +K+
Sbjct: 5 LAFVNEKIKIACERAERSAQEVKLVAVTKTVGIEKTNEVIEAGLTDLGENRNEGFLQKYE 64
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ V FIGSLQ+ KV EI++ D + ++ R A + KQ R ++QV
Sbjct: 65 HFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRISLAKEIQRRTTKQVR---CFVQV 119
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARE 183
T E K GI +T F+ ++ ++ V GLM + P + F L + ++
Sbjct: 120 KTSSEESKQGIAAEETIAFIRALQEFDKIEVVGLMTMAPFTEEEAEIRHCFKKLRGLQKQ 179
Query: 184 ----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
CK +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 180 VQELGLSYAPCK--ELSMGMSNDYTIAIEEGATYIRLGTILVG 220
>gi|297184144|gb|ADI20263.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
Length = 218
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 95/203 (46%), Gaps = 13/203 (6%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
++ V LVAVSK + + A GQ F ENK+QE K + K D++ IG +Q+
Sbjct: 16 QEGVQLVAVSKTKPVELLFEAYEAGQRDFGENKVQEMALKAEAMPK--DIRWHMIGHVQT 73
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK+ + ++ V REK L K R + +QV+ E K G + ++
Sbjct: 74 NKIKYMAPFVHMVHGVDREKVLRELDKHAKKVDRTINCLLQVHIAQEETKFGWSIAELEE 133
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPK---------PHFYLLSEIARECKLTKLSMGMTR 195
+ + V GLM + N +FY + A++ LS+GM+
Sbjct: 134 VLPTLSVYSNIKVCGLMGMASNTDNKDQIGKEFSGLSNFY--NAHAQKQGWNTLSIGMSG 191
Query: 196 DFELAIASGATSVRIGSGIFGER 218
D+ +A+A GAT VRIGS IFG R
Sbjct: 192 DYTIAMAHGATHVRIGSSIFGAR 214
>gi|300727951|ref|ZP_07061329.1| pyridoxal phosphate enzyme, YggS family [Prevotella bryantii B14]
gi|299774793|gb|EFI71407.1| pyridoxal phosphate enzyme, YggS family [Prevotella bryantii B14]
Length = 224
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 103/214 (48%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+L P+D V LVA+SK ++ I A GQ IF E+ QE KK L K D++ F
Sbjct: 12 VLDNLPQD-VRLVAISKYHPNEYIEAAYQEGQRIFGESHEQELAKKVESLPK--DIEWHF 68
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NKV I +IE V K ++ + K R + V ++++ E K G+
Sbjct: 69 IGHLQTNKVKYIAPYISMIEAVDSFKLLKEINKQAAKHDRIINVLLELHIAEEETKYGLT 128
Query: 139 PNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEIARECK-------- 185
+ ++ + ++ + + GLM + + + F + ++ E K
Sbjct: 129 LDDCRNLLAEGTWKELEHVQICGLMMMASNTDDTQLIEKEFDIAAKFFDEIKQKYFTNDN 188
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ S GM+ D++LAI +T VR+G+ IFG R
Sbjct: 189 HFCERSWGMSNDYQLAIKHQSTMVRVGTFIFGPR 222
>gi|196038758|ref|ZP_03106066.1| conserved hypothetical protein TIGR00044 [Bacillus cereus
NVH0597-99]
gi|196030481|gb|EDX69080.1| conserved hypothetical protein TIGR00044 [Bacillus cereus
NVH0597-99]
Length = 224
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQTNLTTVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
+K+ + V FIGSLQ+ KV EI++ D + ++ R LSL Q R
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDR------LSLAKEIQKRAN 112
Query: 120 --LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP----- 172
+ +IQV T E K G+ +T F+ ++ ++ V GLM + P +
Sbjct: 113 KKVKCFIQVKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCF 172
Query: 173 -HFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+L + +E +L +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 173 KELRMLQKEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVG 222
>gi|172057965|ref|YP_001814425.1| hypothetical protein Exig_1956 [Exiguobacterium sibiricum 255-15]
gi|171990486|gb|ACB61408.1| conserved hypothetical protein [Exiguobacterium sibiricum 255-15]
Length = 223
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 105/227 (46%), Gaps = 20/227 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +Q +Q ++ A K V L+ V+K V S+ L+ G EN+ +
Sbjct: 1 MSISENVQQVRQNMKQ-AYEKTDQKKQVQLIGVTKSVSSEVAAELLAAGITALGENRPEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L +E + FIG+LQ+ KV +++ DV+ ++ R A E I +
Sbjct: 60 LTDKQTVLGREA-CEWHFIGTLQTRKVRQVIDRIDVLHSLDRLHLA-----EEINKRAKQ 113
Query: 121 PV--YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-------K 171
PV ++QVN E K GI P F+ Q + V GLM + P + +
Sbjct: 114 PVDCFVQVNVSGEESKQGIDPEDVHSFLHEVGQYPMVRVIGLMTMAPLTEDEQVLRSVFR 173
Query: 172 PHFYLLSEIAR----ECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
L E+A T+LSMGM+ D+++AI GAT VRIG+ +
Sbjct: 174 SLRVLRDEVATRQLPHAPCTELSMGMSSDYQIAIEEGATYVRIGTTL 220
>gi|325855519|ref|ZP_08171856.1| pyridoxal phosphate enzyme, YggS family [Prevotella denticola CRIS
18C-A]
gi|325483802|gb|EGC86761.1| pyridoxal phosphate enzyme, YggS family [Prevotella denticola CRIS
18C-A]
Length = 223
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 98/207 (47%), Gaps = 16/207 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
D V LVA+SK + I A GQ +F E++ QE +K L K D++ FIG LQ+N
Sbjct: 17 DGVRLVAISKFHPVEYIEAAYREGQRVFGESQEQELARKVESLPK--DIEWHFIGHLQTN 74
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV I +IE V K ++ + + R + V ++++ E K G P ++
Sbjct: 75 KVKYIAPYISMIEAVDSLKLLKEINKQAARYDRVINVLLELHIAEEESKYGFTPAACREL 134
Query: 146 VILCRQKYQLNVE--GLMCIPPAMGNP---KPHFYLLSEIARECK---------LTKLSM 191
+ K NV GLM + + N + L +++ E K + S
Sbjct: 135 LENGEWKELRNVHISGLMMMASNVDNRSQIRGEMTLAADLFDELKARFFADDPAFKERSW 194
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D+++A+ +T VR+G+ IFG R
Sbjct: 195 GMSHDYDIAVECRSTMVRVGTAIFGPR 221
>gi|94985526|ref|YP_604890.1| hypothetical protein Dgeo_1426 [Deinococcus geothermalis DSM 11300]
gi|94555807|gb|ABF45721.1| Protein of unknown function UPF0001 [Deinococcus geothermalis DSM
11300]
Length = 219
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 100/218 (45%), Gaps = 25/218 (11%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVA------LSCGQVIFAENKLQEAKKK--- 64
I +A A RP +SV LVAV+K D + IR L G EN+ QE + K
Sbjct: 10 IRAAAERAGRPAESVRLVAVTKGHDLEAIRTQVLRYADLQPGGFPLGENRAQELRDKVAE 69
Query: 65 WIPL---RKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIKQSRF 119
W L EW FIG LQ NKV + V L +E V + A ++ K +
Sbjct: 70 WSALGWPSAEW----HFIGPLQLNKVKYLRPVRLVHSLEDV---RQAQAIADAAAKWGQA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH--FYLL 177
V +Q++ G E QK GI P + Q L V GLM + P F
Sbjct: 123 PDVLLQLHNG-EAQKHGIHPADLRRVYAGVMQT-GLKVRGLMVMAPEGDEAAARRVFAET 180
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ A + L +LSMGM+ D+ LAI GAT VR+G +F
Sbjct: 181 AQRAHDLGLPELSMGMSGDYPLAIEQGATLVRVGRSLF 218
>gi|46190917|ref|ZP_00120889.2| COG0325: Predicted enzyme with a TIM-barrel fold [Bifidobacterium
longum DJO10A]
gi|189440084|ref|YP_001955165.1| hypothetical protein BLD_1222 [Bifidobacterium longum DJO10A]
gi|189428519|gb|ACD98667.1| Hypothetical TIM-barrel fold containing enzyme [Bifidobacterium
longum DJO10A]
Length = 271
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 99/242 (40%), Gaps = 34/242 (14%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK- 70
+I + +A R SV L+A +K D +I A+ G EN+ QE K L +
Sbjct: 28 DRITEAESVAGREAGSVHLLAATKTRDVGEILAAIDAGVHRIGENRPQEIIVKAPGLARL 87
Query: 71 ---------------------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL 109
+ IG LQ+NK+ +++ D IE+V + A +
Sbjct: 88 LAERGYSLGVVETEGGAAADAAHHIPFHLIGQLQANKIGKVLPAVDTIESVDSIELAEKI 147
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
+ + + V ++VN E KSG P+ D L ++GLM I + +
Sbjct: 148 ARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQGLMTIGAHVDD 207
Query: 170 PK------PHF------YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ H L S T+LSMGMT D AI G+T VR+G+ IFGE
Sbjct: 208 ERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMAYAIEEGSTIVRVGTAIFGE 267
Query: 218 RP 219
R
Sbjct: 268 RA 269
>gi|148988712|ref|ZP_01820145.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
gi|168491452|ref|ZP_02715595.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC0288-04]
gi|147925913|gb|EDK76988.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
gi|183574205|gb|EDT94733.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC0288-04]
gi|301794646|emb|CBW37097.1| conserved hypothetical protein [Streptococcus pneumoniae INV104]
Length = 223
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 111/227 (48%), Gaps = 17/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
+K+ L K+ DV IG+LQ KV +++ D + K A E+ K+S R
Sbjct: 61 FLEKYEAL-KDRDVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAG----EIQKRSDRV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ ++QVN E K G + + + + ++ GLM + P + K F
Sbjct: 116 IKCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKA 175
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 176 TQDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|294501010|ref|YP_003564710.1| hypothetical protein BMQ_4266 [Bacillus megaterium QM B1551]
gi|294350947|gb|ADE71276.1| conserved hypothetical protein [Bacillus megaterium QM B1551]
Length = 227
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 110/229 (48%), Gaps = 22/229 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ L+ +Q I + R ++ V L+AV+K V +K+ A+ G + EN+ +
Sbjct: 4 SVSENLEAVQQTIAEACKKVNRNREDVELIAVTKYVSAKRAAEAVDAGILHLGENRDEGL 63
Query: 62 KKKW--IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K+ I + W FIGSLQ+ KV ++ D I ++ R L+ E+ K++
Sbjct: 64 LEKYESIGEKATW----HFIGSLQTRKVKNVIDKVDYIHSLDRLS----LAKEIDKRAEH 115
Query: 120 -LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+ ++QVN E K G+ F+ + V GLM + P + + F
Sbjct: 116 RIKCFVQVNVAEEQSKHGLAVEDVIPFIQSLEAFANIQVVGLMTMAPHTDDESTLRSCFK 175
Query: 176 LLSEIA---RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L ++ +E L T+LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 176 GLKKLQNRIQELNLPYAPCTELSMGMSNDYAIAIEEGATFIRLGTTLVG 224
>gi|228998681|ref|ZP_04158268.1| hypothetical protein bmyco0003_32420 [Bacillus mycoides Rock3-17]
gi|228761149|gb|EEM10108.1| hypothetical protein bmyco0003_32420 [Bacillus mycoides Rock3-17]
Length = 222
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 106/223 (47%), Gaps = 20/223 (8%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +KI+ + A+R V LVAV+K V +K + G EN+ + +K+
Sbjct: 5 LAFVNEKIKIACERAERSAQEVKLVAVTKTVGIEKTNEVIEAGLTDLGENRNEGFLQKYE 64
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ V FIGSLQ+ KV EI++ D + ++ R A + KQ R ++QV
Sbjct: 65 HFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRISLAKEIQKRTTKQVR---CFVQV 119
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARE 183
T E K GI +T F+ ++ ++ V GLM + P + F L + ++
Sbjct: 120 KTSSEESKQGIAAEETIAFIRALQEFDKIEVVGLMTMAPFTEEEAEIRHCFKKLRGLQKQ 179
Query: 184 ----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
CK +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 180 VQELGLSYAPCK--ELSMGMSNDYTIAIEEGATYIRLGTILVG 220
>gi|21910707|ref|NP_664975.1| hypothetical protein SpyM3_1171 [Streptococcus pyogenes MGAS315]
gi|28895603|ref|NP_801953.1| hypothetical protein SPs0691 [Streptococcus pyogenes SSI-1]
gi|94988873|ref|YP_596974.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS9429]
gi|94992763|ref|YP_600862.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS2096]
gi|21904910|gb|AAM79778.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
gi|28810852|dbj|BAC63786.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|94542381|gb|ABF32430.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS9429]
gi|94546271|gb|ABF36318.1| Pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS2096]
Length = 223
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 115/226 (50%), Gaps = 20/226 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L NK ++F + I S A R DSVS++AV+K VDS + G AEN++ +
Sbjct: 4 LTNKKKIF-ETIRLSTEAANRTNDSVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDKFL 62
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ L K V+ IG+LQ KV E+++ D + + L+LE+ K++ PV
Sbjct: 63 EKYDAL-KCMPVKWHLIGTLQRRKVKEVINYVDYFHALDSVR----LALEINKRADH-PV 116
Query: 123 --YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G ++ + + + ++ + GLM + PA + + F
Sbjct: 117 KCFLQVNISKEESKHGFNISEIDEAIEEIGKMEKIQLVGLMTMAPANASKESIITIFRQA 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ + +L T+LSMGM+ D+ +AI G+T +RIG F
Sbjct: 177 NQLRKNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFF 222
>gi|182684607|ref|YP_001836354.1| ylmE protein [Streptococcus pneumoniae CGSP14]
gi|225857281|ref|YP_002738792.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
P1031]
gi|303258594|ref|ZP_07344574.1| ylmE protein [Streptococcus pneumoniae SP-BS293]
gi|303262681|ref|ZP_07348621.1| ylmE protein [Streptococcus pneumoniae SP14-BS292]
gi|303263621|ref|ZP_07349543.1| ylmE protein [Streptococcus pneumoniae BS397]
gi|303266382|ref|ZP_07352271.1| ylmE protein [Streptococcus pneumoniae BS457]
gi|303268255|ref|ZP_07354053.1| ylmE protein [Streptococcus pneumoniae BS458]
gi|182629941|gb|ACB90889.1| ylmE protein [Streptococcus pneumoniae CGSP14]
gi|225725473|gb|ACO21325.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
P1031]
gi|301802367|emb|CBW35121.1| conserved hypothetical protein [Streptococcus pneumoniae INV200]
gi|302636237|gb|EFL66732.1| ylmE protein [Streptococcus pneumoniae SP14-BS292]
gi|302640095|gb|EFL70550.1| ylmE protein [Streptococcus pneumoniae SP-BS293]
gi|302642206|gb|EFL72555.1| ylmE protein [Streptococcus pneumoniae BS458]
gi|302644082|gb|EFL74340.1| ylmE protein [Streptococcus pneumoniae BS457]
gi|302646659|gb|EFL76884.1| ylmE protein [Streptococcus pneumoniae BS397]
Length = 223
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 111/227 (48%), Gaps = 17/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVGEASLSAHRESSSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
+K+ L K+ DV IG+LQ KV +++ D + K A E+ K+S R
Sbjct: 61 FLEKYEAL-KDRDVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAG----EIQKRSDRV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ ++QVN E K G + + + + ++ GLM + P + K F
Sbjct: 116 IKCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKA 175
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 176 TQDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|209736652|gb|ACI69195.1| Proline synthetase co-transcribed bacterial homolog protein [Salmo
salar]
Length = 282
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 113/242 (46%), Gaps = 28/242 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+G L K+ +A A+RPK LVAVSK + A G F EN +
Sbjct: 10 VGKALHAVVDKVNQAA--ARRPKTLPAVPPRLVAVSKTKPPDMVIEAYRKGHRNFGENYV 67
Query: 59 QEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEM 113
E K L+ +++ FIG LQ N V++++ + ++ +ETV K A ++
Sbjct: 68 NELVDKASNLQILESCPEIEWHFIGHLQKNNVNKLLGVPNLFMVETVDSAKLADKVNSSW 127
Query: 114 IK----QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIP---- 164
+ ++ L + +Q+NT E K G+ P +T + V K L+ GLM I
Sbjct: 128 QRLRAASTQTLKIMVQINTSGEESKHGLPPGETVNTVKHILSKCSALHFSGLMTIGRYGY 187
Query: 165 PAMGNPKPHF-YLLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
P P F LLS C + +LSMGM+ DFE AI G+T+VR+GS IFG
Sbjct: 188 DLADGPNPDFQALLSRRQEVCASLQLPLEDVELSMGMSTDFEHAIEVGSTNVRVGSTIFG 247
Query: 217 ER 218
R
Sbjct: 248 NR 249
>gi|15901500|ref|NP_346104.1| ylmE protein [Streptococcus pneumoniae TIGR4]
gi|111658555|ref|ZP_01409218.1| hypothetical protein SpneT_02000311 [Streptococcus pneumoniae
TIGR4]
gi|148993763|ref|ZP_01823190.1| ylmE protein [Streptococcus pneumoniae SP9-BS68]
gi|148997716|ref|ZP_01825280.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
gi|149001949|ref|ZP_01826903.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
gi|168483465|ref|ZP_02708417.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC1873-00]
gi|168486966|ref|ZP_02711474.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC1087-00]
gi|168488621|ref|ZP_02712820.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
SP195]
gi|168493566|ref|ZP_02717709.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC3059-06]
gi|194397968|ref|YP_002038279.1| YlmE protein [Streptococcus pneumoniae G54]
gi|221232402|ref|YP_002511555.1| hypothetical protein SPN23F_16660 [Streptococcus pneumoniae ATCC
700669]
gi|225855095|ref|YP_002736607.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
JJA]
gi|237650671|ref|ZP_04524923.1| pyridoxal phosphate enzyme, YggS family protein [Streptococcus
pneumoniae CCRI 1974]
gi|298230130|ref|ZP_06963811.1| pyridoxal phosphate enzyme, YggS family protein [Streptococcus
pneumoniae str. Canada MDR_19F]
gi|298254431|ref|ZP_06978017.1| pyridoxal phosphate enzyme, YggS family protein [Streptococcus
pneumoniae str. Canada MDR_19A]
gi|298503409|ref|YP_003725349.1| alanine racemase [Streptococcus pneumoniae TCH8431/19A]
gi|307068290|ref|YP_003877256.1| hypothetical protein SPAP_1670 [Streptococcus pneumoniae AP200]
gi|4009471|gb|AAC95441.1| YlmE [Streptococcus pneumoniae G54]
gi|14973156|gb|AAK75744.1| ylmE protein [Streptococcus pneumoniae TIGR4]
gi|147756215|gb|EDK63257.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
gi|147759758|gb|EDK66748.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
gi|147927719|gb|EDK78743.1| ylmE protein [Streptococcus pneumoniae SP9-BS68]
gi|172043110|gb|EDT51156.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC1873-00]
gi|183570133|gb|EDT90661.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC1087-00]
gi|183572682|gb|EDT93210.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
SP195]
gi|183576347|gb|EDT96875.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC3059-06]
gi|194357635|gb|ACF56083.1| YlmE protein [Streptococcus pneumoniae G54]
gi|220674863|emb|CAR69438.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC
700669]
gi|225722717|gb|ACO18570.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
JJA]
gi|298239004|gb|ADI70135.1| alanine racemase [Streptococcus pneumoniae TCH8431/19A]
gi|306409827|gb|ADM85254.1| Predicted enzyme with a TIM-barrel fold [Streptococcus pneumoniae
AP200]
gi|332072494|gb|EGI82977.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae GA17570]
gi|332074000|gb|EGI84478.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae GA41301]
gi|332199694|gb|EGJ13769.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae GA41317]
gi|332200224|gb|EGJ14297.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae GA47368]
gi|332201091|gb|EGJ15162.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae GA47901]
Length = 223
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 111/227 (48%), Gaps = 17/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
+K+ L K+ DV IG+LQ KV +++ D + K A E+ K+S R
Sbjct: 61 FLEKYEAL-KDRDVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAG----EIQKRSDRV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ ++QVN E K G + + + + ++ GLM + P + K F
Sbjct: 116 IKCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKA 175
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 176 AQDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|39961008|ref|XP_364647.1| hypothetical protein MGG_09492 [Magnaporthe oryzae 70-15]
gi|145010990|gb|EDJ95646.1| hypothetical protein MGG_09492 [Magnaporthe oryzae 70-15]
Length = 251
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 116/244 (47%), Gaps = 33/244 (13%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC--GQVIFAENKLQ 59
+L ++L+ ++++++A RP V LVAVSK+ + I S G F EN Q
Sbjct: 10 ALASQLRAVTERLQSAA--KGRP---VRLVAVSKLKPANDILALHSAPVGHTHFGENYAQ 64
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQS 117
E +K L + +Q FIG LQS I + ++ + +V K A LL +
Sbjct: 65 ELSQKAQVLPR--SIQWHFIGGLQSTHCKSIAKIPNLWCVSSVDTLKKAQLLDRARGQAG 122
Query: 118 RF-LPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-----QKYQLNVEGLMCI-------- 163
L +++QVNT E KSG P + + + LCR + L + GLM I
Sbjct: 123 EPPLNIHVQVNTSGEESKSGCAPGE--ETIALCRAVASDECPNLRLLGLMTIGAIARSRA 180
Query: 164 -PPAMGNP-----KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
P N + L+++ +LSMGM+ DFE AI+ G+ VRIGS IFGE
Sbjct: 181 TTPETENEDFVCLREQRDLVAKELALEGELELSMGMSDDFEGAISMGSHEVRIGSTIFGE 240
Query: 218 RPCQ 221
RP +
Sbjct: 241 RPAK 244
>gi|212715372|ref|ZP_03323500.1| hypothetical protein BIFCAT_00267 [Bifidobacterium catenulatum DSM
16992]
gi|212661678|gb|EEB22253.1| hypothetical protein BIFCAT_00267 [Bifidobacterium catenulatum DSM
16992]
Length = 280
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 109/253 (43%), Gaps = 51/253 (20%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLR 69
+I ++ A R SV L+A +K D +I A+ G + EN+ QE AK + + R
Sbjct: 32 DRIASAEQHAGRDAGSVRLLAATKTRDVGEIMAAIDAGVRMIGENRPQEVTAKAEGLMAR 91
Query: 70 ------------------KEWDVQL-------RFIGSLQSNKVSEIVSLFDVIETVSREK 104
D ++ IG LQSNK+ +++ + + IE+V
Sbjct: 92 CAERGFALGVAGDSGIASASGDSEVACERIPFHLIGQLQSNKIGKVLPVVNAIESVDSLD 151
Query: 105 TASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY----QLNVEGL 160
A +S + + + V ++VN E KSG P + I QK L ++GL
Sbjct: 152 LAEKISRRAVARGVTVGVLLEVNESGETSKSGCSPA----YAIRIAQKIGTLDGLELQGL 207
Query: 161 MCIPPAMGNPKPHFYLLSEIAR--------------ECKLTKLSMGMTRDFELAIASGAT 206
M I + + + R C+ +LSMGMT D ELAIA G+T
Sbjct: 208 MTIGAHVSDETAIRRGFEHLRRTRDRILASGEPGTQSCR--ELSMGMTGDMELAIAEGST 265
Query: 207 SVRIGSGIFGERP 219
VR+G+ IFGER
Sbjct: 266 IVRVGTAIFGERA 278
>gi|123967982|ref|YP_001008840.1| TIM-barrel fold family protein [Prochlorococcus marinus str.
AS9601]
gi|123198092|gb|ABM69733.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
str. AS9601]
Length = 190
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 106/194 (54%), Gaps = 13/194 (6%)
Query: 33 VSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS 92
+SK S++I+ + GQ F E+K+QEA +K + L++ + FIG +QSNK+ +IV
Sbjct: 1 MSKGFKSQEIKTIQNIGQNDFGESKVQEAFEKQLTLKELKQINWHFIGRIQSNKIRKIVQ 60
Query: 93 LFDVIETV-SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
F I +V S EK + ++ ++ + + +QV + K G P + +IL
Sbjct: 61 NFKYIHSVDSFEKLQKISNISREEKKKPF-IMLQVKLSDDPTKGGFNP----ESLILKWT 115
Query: 152 KYQ----LNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTKLSMGMTRDFELAIASG 204
+ Q +++ GLM I P +PK + L + +A +L SMGM+ D+E AI +G
Sbjct: 116 EIQELKNISLTGLMTINPKGLSPKENLGLFKKCRALADYLQLPDCSMGMSGDWEEAIDAG 175
Query: 205 ATSVRIGSGIFGER 218
+T +R+G+ IFG R
Sbjct: 176 STWLRLGALIFGGR 189
>gi|240279165|gb|EER42670.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
gi|325089453|gb|EGC42763.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 306
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 111/251 (44%), Gaps = 66/251 (26%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVI-FAENKLQE--AKKKWIPLRKEWDVQLR 77
A+RP+ V LVAVSK+ + I++ + F EN LQE K K +P W
Sbjct: 58 AQRPQCPVRLVAVSKLKPASDIQILHQYNPALHFGENYLQELLEKSKILPPGIRW----H 113
Query: 78 FIGSLQSNK---VSEIVSLFDVIETVSREKTASLLSLEMIKQS----------------- 117
FIG LQSNK ++ V +E+V EK ASLL ++S
Sbjct: 114 FIGGLQSNKCVTLARDVRGLWAVESVDSEKKASLLDRGWGERSTQAGVGEDAATTTAAAS 173
Query: 118 -----------RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR----QKYQLNVEGLMC 162
L V++QVNT E KSG+ P + V LCR Q +L ++GLM
Sbjct: 174 ASEGRDAGADGDRLRVFVQVNTSGEDSKSGVEPAEA---VRLCRYIREQCPRLKLQGLMT 230
Query: 163 I-------PPAMGNPKPHFYLLSE----IARECKLTK----------LSMGMTRDFELAI 201
I M N F L E + +E L + LSMGM+ DFE AI
Sbjct: 231 IGAIARSRATTMENKNEDFLCLRETKERVEKELGLLEGDEEAGEGLELSMGMSGDFEGAI 290
Query: 202 ASGATSVRIGS 212
A G+T VR+GS
Sbjct: 291 AMGSTQVRVGS 301
>gi|269794410|ref|YP_003313865.1| pyridoxal phosphate enzyme, YggS family [Sanguibacter keddieii DSM
10542]
gi|269096595|gb|ACZ21031.1| pyridoxal phosphate enzyme, YggS family [Sanguibacter keddieii DSM
10542]
Length = 273
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 103/224 (45%), Gaps = 34/224 (15%)
Query: 28 VSLVAVSKMVDSKKIRVALSC-------GQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
V L+ +K D+ +R A+ G+V+ EN++QE K P + + + IG
Sbjct: 51 VRLLLATKTQDADDVRAAVLADRAAGRPGEVLVGENRVQELTAK-APALADLALTVHLIG 109
Query: 81 SLQSNKVSEIVSLFD-----VIETVSR----EKTASLL---SLEMIKQSRFLP--VYIQV 126
+LQSNKV+ + +ETV EK S + + E S +P VY+QV
Sbjct: 110 ALQSNKVNHALRALAQHRQACVETVDSIALAEKIGSRVLTAAAEAGDGSTDIPLDVYVQV 169
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEIARE 183
N E K+G+ P + + + L + G M I + + F L E+ E
Sbjct: 170 NVSGEESKAGVSPEAAVELALAVAEVDGLRLSGFMTIGARSSDERLVRAGFARLRELRDE 229
Query: 184 ---------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
T+LSMGM++D E A+A GAT VR+GS +FG R
Sbjct: 230 VLGSGAPGTSAATELSMGMSQDLEWAVAEGATLVRVGSAVFGAR 273
>gi|225555026|gb|EEH03319.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 306
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/251 (33%), Positives = 111/251 (44%), Gaps = 66/251 (26%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVI-FAENKLQE--AKKKWIPLRKEWDVQLR 77
A+RP+ V LVAVSK+ + I++ + F EN LQE K K +P W
Sbjct: 58 AQRPQCPVRLVAVSKLKPASDIQILHQYSPALHFGENYLQELLEKSKILPPGIRW----H 113
Query: 78 FIGSLQSNK---VSEIVSLFDVIETVSREKTASLLSLEMIKQS----------------- 117
FIG LQSNK ++ V +E+V EK ASLL ++S
Sbjct: 114 FIGGLQSNKCVTLARDVRGLWAVESVDSEKKASLLDRGWGERSTQAGVGEDAATTTAAAS 173
Query: 118 -----------RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR----QKYQLNVEGLMC 162
L V++QVNT E KSG+ P + V LCR Q +L ++GLM
Sbjct: 174 ASEGRDAGADGDRLRVFVQVNTSGEDSKSGVEPAEA---VRLCRYIREQCPRLKLQGLMT 230
Query: 163 I-------PPAMGNPKPHFYLLSE----IARECKLTK----------LSMGMTRDFELAI 201
I M N F L E + +E L + LSMGM+ DFE AI
Sbjct: 231 IGAIARSRATTMENKNEDFLCLRETKERVEKELGLLEGDEEAGEGLELSMGMSGDFEGAI 290
Query: 202 ASGATSVRIGS 212
A G+T VR+GS
Sbjct: 291 AMGSTQVRVGS 301
>gi|282859305|ref|ZP_06268418.1| pyridoxal phosphate enzyme, YggS family [Prevotella bivia
JCVIHMP010]
gi|282587930|gb|EFB93122.1| pyridoxal phosphate enzyme, YggS family [Prevotella bivia
JCVIHMP010]
Length = 227
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 21/218 (9%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL 76
++L K P + V L+A+SK ++ I A + GQ +F E+++QE +K L K D++
Sbjct: 13 HSVLNKLP-NGVRLIAISKYHPNEYIEAAYAEGQRVFGESQVQELSQKVETLPK--DIEW 69
Query: 77 RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG 136
FIG LQ+NKV IV +IE V K + + K R + V ++++ E K G
Sbjct: 70 HFIGHLQTNKVKYIVPYISMIEAVDSVKLLREIEKQAAKHDRVVNVLLELHIAQEESKYG 129
Query: 137 IMPNQTKDFVILCRQKY--QLNVEGLMCIPPAMGN---------PKPHFYLLSEI----- 180
+ + + K +++ GLM + +G+ F+ E+
Sbjct: 130 FSFDDCRALLESGEWKKMPHVHISGLMMMASNVGDEAQIRKEMLSAADFF--DEVKQKYF 187
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A + + S GM+ D+++A+ +T VRIG+ IFG R
Sbjct: 188 ADDSAFKERSWGMSHDYQIAVQCRSTMVRIGTTIFGPR 225
>gi|225859420|ref|YP_002740930.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
70585]
gi|225720359|gb|ACO16213.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
70585]
Length = 223
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 111/227 (48%), Gaps = 17/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSANRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
+K+ L K+ DV IG+LQ KV +++ D + K A E+ K+S R
Sbjct: 61 FLEKYEAL-KDRDVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAG----EIQKRSDRV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ ++QVN E K G + + + + ++ GLM + P + K F
Sbjct: 116 IKCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKA 175
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 176 TQDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|47570315|ref|ZP_00240962.1| conserved hypothetical protein protein TIGR00044 [Bacillus cereus
G9241]
gi|47553024|gb|EAL11428.1| conserved hypothetical protein protein TIGR00044 [Bacillus cereus
G9241]
Length = 224
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQKNLTTVNESIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
+K+ + V FIGSLQ+ KV EI++ D + ++ R LSL Q R
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDR------LSLAKEIQKRAD 112
Query: 120 --LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP----- 172
+ +IQV T E K G+ +T F+ ++ ++ V GLM + P +
Sbjct: 113 KKVKCFIQVKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCF 172
Query: 173 -HFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+L +E +L +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 173 KELRMLQAEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVG 222
>gi|296394950|ref|YP_003659834.1| alanine racemase [Segniliparus rotundus DSM 44985]
gi|296182097|gb|ADG99003.1| alanine racemase domain protein [Segniliparus rotundus DSM 44985]
Length = 229
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 10/223 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ +++I ++ + R V+LV V+K + + + G F E++ QEA+
Sbjct: 7 LAGRLEQVRERIASACAKSGRDACEVTLVVVTKFFPASDVALLYELGCREFGESRDQEAR 66
Query: 63 KKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + + IG +Q NK I S V+++V + + K ++ L
Sbjct: 67 AKAAQLAEAAPQARWHMIGQIQRNKAKSIASWAHVVQSVDDSRLVAAFE----KTAQPLD 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V +QV+ + ++SG + + L ++GLM IPP +P F L+ +
Sbjct: 123 VLVQVSLDGDEKRSGAAAERVFELADQVEAASNLRLKGLMAIPPLGADPAQAFAALAALH 182
Query: 182 R-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
T LS GM+ DFE AIA+G++ VR+G+ I G RP
Sbjct: 183 AALKAAHPDATALSAGMSGDFETAIAAGSSCVRVGAAILGSRP 225
>gi|322385900|ref|ZP_08059542.1| cell division protein YlmE [Streptococcus cristatus ATCC 51100]
gi|321270079|gb|EFX52997.1| cell division protein YlmE [Streptococcus cristatus ATCC 51100]
Length = 223
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 17/205 (8%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R KDSV+++AV+K VD + + + G EN++ + +K+ L++E ++ IGSL
Sbjct: 23 RLKDSVNIIAVTKYVDCETAKKLVDTGIKHIGENRVDKFLEKYHALKEE-NLTWHLIGSL 81
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q KV ++++ D + K A ++ + + ++QVN E K G + +
Sbjct: 82 QRRKVKDVINYVDYFHALDSVKLAQEINK---RADHVINCFLQVNISKEESKHGFLVEEL 138
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL------------TKLS 190
+ + + GLM + P + + + SE A + +L + LS
Sbjct: 139 DSVLPELAALENICIVGLMTMAPLEADHQELNQIFSE-AHQLQLNLQSKQLKNMPFSDLS 197
Query: 191 MGMTRDFELAIASGATSVRIGSGIF 215
MGM+RD+ AIA+G+T VRIG+ F
Sbjct: 198 MGMSRDYPEAIANGSTYVRIGTAFF 222
>gi|67921018|ref|ZP_00514537.1| Protein of unknown function UPF0001 [Crocosphaera watsonii WH 8501]
gi|67857135|gb|EAM52375.1| Protein of unknown function UPF0001 [Crocosphaera watsonii WH 8501]
Length = 218
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 107/211 (50%), Gaps = 14/211 (6%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
IL++ P SV LVAV+K I+ A G FAE+++QEA K L+ D+ F
Sbjct: 10 ILSEIP-SSVRLVAVTKKKPVTAIKEAYHYGIRDFAESRVQEAILKQEELQDHKDICWHF 68
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG +Q+NK +I+ F I +V K A L K S + V +QV + K G
Sbjct: 69 IGHIQTNKAKKILENFHWIHSVDSLKLAEHLDKLAAKTSIYPHVCLQVKLLPDPNKYGWE 128
Query: 139 PNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH----FYLLSEIARE------CKLT 187
+ +D L K+ L +EGLM I P +G + F E+A + +L
Sbjct: 129 VMEFWQDLPKLEPLKH-LKIEGLMTILP-LGLSENECLETFEKTKELATKINEKSSLQLK 186
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D+ LA+ GAT +R+GS IFG R
Sbjct: 187 ELSMGMSNDYLLAVEKGATMIRLGSIIFGAR 217
>gi|307709601|ref|ZP_07646054.1| alanine racemase, N-terminal domain protein [Streptococcus mitis
SK564]
gi|307619637|gb|EFN98760.1| alanine racemase, N-terminal domain protein [Streptococcus mitis
SK564]
Length = 223
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 110/223 (49%), Gaps = 18/223 (8%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N +VF++ + +++ A R SVS++AV+K VD L G EN++ + +K
Sbjct: 6 NTERVFRE-VAEASLSAHRESGSVSVIAVTKYVDVLTAEALLPLGVHHIGENRVDKFLEK 64
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RFLPVY 123
+ L K+ DV IG+LQ KV +++ D + K A E+ K+S R + +
Sbjct: 65 YQAL-KDRDVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAE----EIQKRSDRVIKCF 119
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVN E K G + + + + ++ GLM + P + K F ++
Sbjct: 120 LQVNISKEESKHGFSREELLEILPELAKLDKIEYVGLMTMAPFEASSEQLKEIFKATQDL 179
Query: 181 ARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+E + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 180 QKEIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTAFF 222
>gi|227504698|ref|ZP_03934747.1| alanine racemase [Corynebacterium striatum ATCC 6940]
gi|227198708|gb|EEI78756.1| alanine racemase [Corynebacterium striatum ATCC 6940]
Length = 231
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 16/225 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +IE+ A A R + L+ V+K + + + G AEN+ QEA+ K
Sbjct: 11 LERTRAQIEDFARAAGR--EVPQLLPVTKFHPAGDVALLAELGVTDVAENREQEARAKAA 68
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL------SLEMIKQSRFL 120
L V+ IG +Q+ K + + + ++ K A+ L + E + L
Sbjct: 69 ELPA---VRFHMIGQIQTKKANHVARWAHSVHSLDSAKLATALDRGVANAQESGDRDDAL 125
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF----YL 176
PV+IQV+ + + G+ V L + L ++G M +PP + F L
Sbjct: 126 PVFIQVSADGDTARGGVALPDVPSLVELVEELVNLELQGFMVVPPLDSDAAEVFGRVRTL 185
Query: 177 LSEIAREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++AR + K+S GM+ D AIA+G VR+G+GI G RP
Sbjct: 186 TDDVARLLGRPLKMSAGMSADLGEAIAAGTDIVRVGTGIMGPRPV 230
>gi|323127715|gb|ADX25012.1| pyridoxaL 5'-phosphate dependent enzyme class III family protein
[Streptococcus dysgalactiae subsp. equisimilis ATCC
12394]
Length = 223
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 27/212 (12%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A RP+ SVS++AV+K VDS + G AEN++ + K+ L K+ V IG
Sbjct: 21 AHRPEHSVSVIAVTKYVDSTIAGQLIDTGIEHIAENRVDKFLDKYEAL-KDKSVTWHLIG 79
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV--YIQVNTGYEIQKSGIM 138
+LQ KV ++++ D + K AS E+ K++ PV ++QVN E K G
Sbjct: 80 TLQRRKVKDVINFVDYFHALDSVKLAS----EIEKRADH-PVKCFLQVNISEEDSKHGFK 134
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK------------- 185
++ + + + + + GLM + PA + + ++ I RE
Sbjct: 135 VSEIETAIEEIGKMGNIQLVGLMTMAPADASQER----IASIFREANQLRKNLQSKKRKN 190
Query: 186 --LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
T+LSMGM+ D+ +AI G+T VRIG+ F
Sbjct: 191 MPFTELSMGMSGDYSIAIQEGSTFVRIGTSFF 222
>gi|312220182|emb|CBY00124.1| hypothetical protein [Leptosphaeria maculans]
Length = 770
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 116/255 (45%), Gaps = 54/255 (21%)
Query: 8 QVFKQKIENSAILAKRPKDSVS-------LVAVSKMVDSKKIRVALSCG----QVIFAEN 56
Q KQ EN A ++ R D+VS L+AVSK+ + I +AL Q F EN
Sbjct: 511 QRAKQLAENIAGISSR-IDAVSKGGKQVRLIAVSKLKPANDI-LALHQPPNPIQTHFGEN 568
Query: 57 KLQE--AKKKWIPLRKEWDVQLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLLS- 110
+QE K K +P +W IG LQSNK ++E + + +V EK A+ L
Sbjct: 569 YVQELLEKAKLLPRSIQW----HMIGGLQSNKCKALAEQIPNLWCVSSVDTEKKANELEK 624
Query: 111 -----LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ----LNVEGLM 161
L+ + L + IQVNT E KSG+ P T + LC + L + GLM
Sbjct: 625 GRKALLDHDPSAPKLRIKIQVNTSGEASKSGVEPAHT---LALCTHVLEHCPHLQLSGLM 681
Query: 162 CI---------PPAMGNPKPHFYLLSE--------IARECKLTKLSMGMTRDFELAIASG 204
I P N F L E + E +LSMGM+ DFE AI G
Sbjct: 682 TIGAIARSKATTPETENED--FVALRETRNRVAEALGWEQDRLELSMGMSADFEGAIRHG 739
Query: 205 ATSVRIGSGIFGERP 219
+ VR+GS IFGERP
Sbjct: 740 SDEVRVGSQIFGERP 754
>gi|206976698|ref|ZP_03237602.1| conserved hypothetical protein TIGR00044 [Bacillus cereus H3081.97]
gi|217961321|ref|YP_002339889.1| conserved hypothetical protein TIGR00044 [Bacillus cereus AH187]
gi|222097346|ref|YP_002531403.1| hypothetical protein BCQ_3686 [Bacillus cereus Q1]
gi|206745008|gb|EDZ56411.1| conserved hypothetical protein TIGR00044 [Bacillus cereus H3081.97]
gi|217066862|gb|ACJ81112.1| conserved hypothetical protein TIGR00044 [Bacillus cereus AH187]
gi|221241404|gb|ACM14114.1| conserved hypothetical protein [Bacillus cereus Q1]
Length = 224
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQTNLTTVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
+K+ + V FIGSLQ+ KV EI++ D + ++ R LSL Q R
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDR------LSLAKEIQKRAD 112
Query: 120 --LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP----- 172
+ +IQV T E K G+ +T F+ ++ ++ V GLM + P +
Sbjct: 113 KKVKCFIQVKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCF 172
Query: 173 -HFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+L +E +L +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 173 KTLRMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVG 222
>gi|224498518|ref|ZP_03666867.1| hypothetical protein LmonF1_02029 [Listeria monocytogenes Finland
1988]
Length = 229
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 112/229 (48%), Gaps = 17/229 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE++ + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIEHACEESNRQSEDVTLVAVTKTIDVTGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRF 119
+K + L + D+ +IGSLQ+ KV +++ D + ++ R S L+ E+ K+ ++
Sbjct: 61 FLEKTVELADKDDICWHYIGSLQTRKVKDVLPQIDYLHSLDR----SSLAKEIEKRATKP 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-KPH--FYL 176
+ ++QVN E K G + F+ + + + GLM + P + + H F+
Sbjct: 117 VKCFLQVNISGEESKHGFSKEEALSFLQEANFTF-IEIVGLMTMAPITNSDIELHHVFHE 175
Query: 177 LSEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
L ++ +E +LSMGMT D+ +AI GAT +R+G + +
Sbjct: 176 LKQLQQEIHALQLKNIPCIELSMGMTNDYGIAITEGATFIRVGRALVND 224
>gi|308233437|ref|ZP_07664174.1| alanine racemase domain protein [Atopobium vaginae DSM 15829]
gi|328943779|ref|ZP_08241244.1| alanine racemase domain protein [Atopobium vaginae DSM 15829]
gi|327491748|gb|EGF23522.1| alanine racemase domain protein [Atopobium vaginae DSM 15829]
Length = 259
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 106/218 (48%), Gaps = 13/218 (5%)
Query: 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69
++I N+ + R D + L AVSK VD +I A G +F EN+ Q + K + L+
Sbjct: 35 LSERITNAVQKSGRSLDDIQLCAVSKTVDVPEILAASRAGYTLFGENRPQALRDKALSLK 94
Query: 70 ---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
++ ++ IG+LQ NK++ ++ I++VS + A L+ + + +++
Sbjct: 95 SAIQQGSLRFDMIGNLQLNKINMVLDNCCRIQSVSSLELARALNKHAGAKGLRVSCLLEI 154
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH------FYLLSEI 180
N E+ KSG + + +++EGLM + P +P Y L E
Sbjct: 155 NVVGELSKSGFSSKALYECLDELMSMEHIHIEGLMNMAP-RNDPDTARRSFVGLYELHEA 213
Query: 181 ARE---CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
R +L+ LS GM+ DFE+A+ G+T +R+G +F
Sbjct: 214 LRAQTGLELSTLSCGMSDDFEIALEEGSTLIRLGRIVF 251
>gi|50914615|ref|YP_060587.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS10394]
gi|50903689|gb|AAT87404.1| Pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS10394]
Length = 223
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 114/226 (50%), Gaps = 20/226 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L NK ++F + I S A R D VS++AV+K VDS + G AEN++ +
Sbjct: 4 LTNKKKIF-ETIRLSTEAANRTNDGVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDKFL 62
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ L K V+ IG+LQ KV E+++ D + + L+LE+ K++ PV
Sbjct: 63 EKYDAL-KYMPVKWHLIGTLQRRKVKEVINYVDYFHALDSVR----LALEINKRADH-PV 116
Query: 123 --YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K G ++ + + + ++ + GLM + PA + + F
Sbjct: 117 KCFLQVNISKEESKHGFNISEIDEAIEEIGKMEKIQLVGLMTMAPANASKESIITIFRQA 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ + +L T+LSMGM+ D+ +AI G+T +RIG F
Sbjct: 177 NQLRKNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFF 222
>gi|315283070|ref|ZP_07871341.1| pyridoxal phosphate enzyme, YggS family [Listeria marthii FSL
S4-120]
gi|313613278|gb|EFR87151.1| pyridoxal phosphate enzyme, YggS family [Listeria marthii FSL
S4-120]
Length = 229
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 105/208 (50%), Gaps = 18/208 (8%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81
+ PKD V+LVAV+K +D I G F EN+ +K + L + D+ +IGS
Sbjct: 23 REPKD-VTLVAVTKTIDVAGITELYDLGIRHFGENRADVFLEKTVALADKDDICWHYIGS 81
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRFLPVYIQVNTGYEIQKSGIMPN 140
LQ+ KV +++ D + ++ R S L+ E+ K+ ++ + ++QVN E K G
Sbjct: 82 LQTRKVKDVLPKIDYLHSLDR----SSLAKEIEKRATKSVKCFLQVNISGEESKHGFSKE 137
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNP-KPH--FYLLSEIARECKL--------TKL 189
+ F+ + + + GLM + P + + H F+ L ++ +E T+L
Sbjct: 138 EALSFLQEADFTF-IEIVGLMTMAPITNSDIELHHVFHELKQLQQEIHALQLKNIPCTEL 196
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGE 217
SMGMT D+ +AI GAT +R+G + +
Sbjct: 197 SMGMTNDYGIAITEGATFIRVGRALVSD 224
>gi|225703472|gb|ACO07582.1| Proline synthetase co-transcribed bacterial homolog protein
[Oncorhynchus mykiss]
Length = 282
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 113/243 (46%), Gaps = 30/243 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+G LQ ++ +A A+RPK LVAV K + A G F EN +
Sbjct: 10 VGKALQAVVDRVNQAA--ARRPKTLPAVPPRLVAVGKTKPPDMVIEAYRKGHRNFGENYV 67
Query: 59 QE----AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLE 112
E A I L +++ FIG LQ N V++++ + ++ +ETV K A ++
Sbjct: 68 NELVDRASNPQI-LESCPEIEWHFIGHLQKNNVNKLLGVPNLFMVETVDSVKLADKVNSS 126
Query: 113 MIK----QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCI---- 163
++ ++ L + +Q+NT E K G+ P +T V K L+ GLM I
Sbjct: 127 WLRLRTASTQTLKIMVQINTSGEESKHGLPPGETVTTVKHILSKCSALHFSGLMTIGRYG 186
Query: 164 PPAMGNPKPHF-YLLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
P P F LLS C + +LSMGM+ DFE AI G+T+VR+GS IF
Sbjct: 187 HDLADGPNPDFQALLSRRQEVCASLQLPLEDVELSMGMSTDFEHAIEVGSTNVRVGSTIF 246
Query: 216 GER 218
G R
Sbjct: 247 GNR 249
>gi|255715669|ref|XP_002554116.1| KLTH0E14652p [Lachancea thermotolerans]
gi|238935498|emb|CAR23679.1| KLTH0E14652p [Lachancea thermotolerans]
Length = 255
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 110/216 (50%), Gaps = 22/216 (10%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
++ VSL+ VSK+ + I++ G F EN +QE K L K D++ FIG LQ+
Sbjct: 38 RNDVSLLPVSKLKPASDIQLLYDHGLRSFGENYVQELISKAEILPK--DIRWHFIGGLQT 95
Query: 85 NKVSEIVSLFDV--IETVSREKTASLLSLEMIK---QSRFLPVYIQVNTGYEIQKSGIMP 139
NK ++ + ++ +ET+ K A L+ K Q+ + +Q+NT E QKSG +
Sbjct: 96 NKCKDLAKVENLYAVETIDSLKKAKKLNEARAKLHPQANKILCNVQINTSEEAQKSG-LS 154
Query: 140 NQTKDF----VILCRQKYQLNVEGLMCI-----PPAMGNPKPHFYLLSEIAR--ECKLT- 187
++ + F +L + + + GLM I + F +L + + + K +
Sbjct: 155 DEKEIFEVVQFMLSDEATNIELGGLMTIGSWDVSHSETEENHDFAVLCQWKKKIDDKFST 214
Query: 188 --KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
KLSMGM+ DF+ AI G + VRIG+ IFG RP +
Sbjct: 215 DLKLSMGMSSDFKQAINQGTSQVRIGTDIFGTRPSR 250
>gi|326941670|gb|AEA17566.1| putative cytoplasmic protein [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 224
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + + I+ S + A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQENLVIVNEAIKESCVRAGRSLQDIKLVAVTKTVGIEKTNEVIETGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
+K+ + V FIGSLQ+ KV EI++ D + ++ R LSL Q R
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDR------LSLAKEIQKRAD 112
Query: 120 --LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP----- 172
+ +IQV T E K G+ + F+ ++ ++ V GLM + P +
Sbjct: 113 KKVKCFIQVKTSSEESKQGLAIEEVVSFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCF 172
Query: 173 -HFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+L +E +L +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 173 KELRMLQTKVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVG 222
>gi|251782910|ref|YP_002997213.1| pyridoxaL 5'-phosphate dependent enzyme classIII family
[Streptococcus dysgalactiae subsp. equisimilis GGS_124]
gi|242391540|dbj|BAH81999.1| pyridoxaL 5'-phosphate dependent enzyme classIII family
[Streptococcus dysgalactiae subsp. equisimilis GGS_124]
Length = 223
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 27/212 (12%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A RP+ SVS++AV+K VDS + G AEN++ + K+ L K+ V IG
Sbjct: 21 AHRPEHSVSVIAVTKYVDSTIAGQLIDTGIEHIAENRVDKFLDKYEAL-KDKSVTWHLIG 79
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV--YIQVNTGYEIQKSGIM 138
+LQ KV ++++ D + K AS E+ K++ PV ++QVN E K G
Sbjct: 80 TLQRRKVKDVINFVDYFHALDSVKLAS----EIEKRADH-PVKCFLQVNISEEDSKHGFK 134
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK------------- 185
++ + + + + + GLM + PA + + ++ I RE
Sbjct: 135 VSEIEAAIEEIGKMGNIQLVGLMTMAPADASQER----IASIFREANQLRKNLQSKKRKN 190
Query: 186 --LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
T+LSMGM+ D+ +AI G+T VRIG+ F
Sbjct: 191 MPFTELSMGMSGDYSIAIQEGSTFVRIGTSFF 222
>gi|145595724|ref|YP_001160021.1| alanine racemase domain-containing protein [Salinispora tropica
CNB-440]
gi|145305061|gb|ABP55643.1| alanine racemase domain protein [Salinispora tropica CNB-440]
Length = 248
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 100/235 (42%), Gaps = 21/235 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I ++ A R V+++AV+K + + + G EN+ QEA
Sbjct: 16 LAAGLARVRTRIADACAAAGRDPGEVTMIAVTKTYPASDVVALIGLGATEVGENRDQEAA 75
Query: 63 KKWIP-----LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM-IKQ 116
K + W FIG LQ NK +V DV+ +V + A L ++
Sbjct: 76 AKAAEVAAAGVTPRW----HFIGQLQRNKAKSVVRYADVVHSVDSVRLARALDRAAGAER 131
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL------CRQKYQLNVEGLMCIPPAMGNP 170
R L V +QV+ + + G +P L L + GLM + P P
Sbjct: 132 DRPLDVLLQVSIDGAVGRGGALPGSADPDAGLDPLAEVVAGVDGLRLTGLMAVAPLGWEP 191
Query: 171 KPHFYLLSEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L+E+A + + T LS GM+ D E A+ GAT VR+GS + G RP
Sbjct: 192 DRAFARLAEVAAGFRVQHPQATLLSAGMSGDLEPAVRYGATHVRVGSALLGMRPT 246
>gi|217967624|ref|YP_002353130.1| alanine racemase domain protein [Dictyoglomus turgidum DSM 6724]
gi|217336723|gb|ACK42516.1| alanine racemase domain protein [Dictyoglomus turgidum DSM 6724]
Length = 235
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 16/205 (7%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R +S+VAV+K + IR A+ G EN++QEA+KK I L + + +G L
Sbjct: 27 RDPSEISVVAVAKGYPPEYIREAVKIGINKIGENRVQEAEKK-ISLLSDLPCEWHMVGHL 85
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ- 141
Q NKV + V +F +I +V A ++ K+ + + + +Q+N E K G +
Sbjct: 86 QRNKVKKAVKMFFLIHSVDSLDLAEEINKHAGKEGKKVDILLQLNLSKEPTKHGFKEEEF 145
Query: 142 --TKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAREC-KLTKL-----S 190
T + + + LN++GLM I P + + F L I ++ +LTKL S
Sbjct: 146 WRTYEKIFALKN---LNIKGLMTIGPLTQDKDAIREVFRKLYNIWKKLIELTKLDLPYLS 202
Query: 191 MGMTRDFELAIASGATSVRIGSGIF 215
MGM+ DFE+AI G+ +R+G IF
Sbjct: 203 MGMSEDFEIAIEEGSNILRLGRIIF 227
>gi|268679691|ref|YP_003304122.1| alanine racemase domain protein [Sulfurospirillum deleyianum DSM
6946]
gi|268617722|gb|ACZ12087.1| alanine racemase domain protein [Sulfurospirillum deleyianum DSM
6946]
Length = 225
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 102/204 (50%), Gaps = 25/204 (12%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK-----WIPLRKEWDVQLRFIGSL 82
V +VA SK + I GQ F ENK+Q+ K +PL EW FIG L
Sbjct: 30 VKIVAASKSATPQMIEAMYEIGQRSFGENKIQDMSDKVHALSHLPL--EW----HFIGRL 83
Query: 83 QSNKVSEIVSLFD-VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
Q+NK+++++ L ++ ++S + A + + +S+ + +Q+N+ YE QK+G++ +
Sbjct: 84 QTNKINQLIDLDPFLMHSLSSLELAQEIDKRLHVKSKTMSALLQINSAYEEQKAGVLSEE 143
Query: 142 T----KDFVILCRQKYQLNVEGLMCIPPAMGNPKP------HFYLLSEIARECKLTKLSM 191
+ + C+ + ++G+M I + K + L E + SM
Sbjct: 144 ALEIYEQISLTCKH---IQLKGVMSIGAHSEDTKAIQKSFEATHKLFESLQNKGAKYCSM 200
Query: 192 GMTRDFELAIASGATSVRIGSGIF 215
GM+ DFELAIA G+ VR+GS +F
Sbjct: 201 GMSNDFELAIACGSNMVRLGSLLF 224
>gi|32477788|ref|NP_870782.1| enzyme with TIM-barrel fold [Rhodopirellula baltica SH 1]
gi|32448342|emb|CAD77859.1| conserved hypothetical protein-putative enzyme with TIM-barrel fold
[Rhodopirellula baltica SH 1]
Length = 253
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 103/208 (49%), Gaps = 17/208 (8%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R DSV +V V+K VD++ + G EN+ Q + K+ L +++ IG+L
Sbjct: 41 RSPDSVRVVGVTKYVDAEITSWLVEAGCHDLGENRPQLLESKFQTLDDS-NIRWHQIGNL 99
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q NKV ++ ++ ++ E+ L E + QSR + I++N E K+G+ +Q
Sbjct: 100 QRNKVRRLLPAEPLVHAIASERLLDALHNECLLQSRSIDGLIEINVSEEEAKTGLPIDQL 159
Query: 143 KDFVILCRQ-----KYQLNVEGLMCIPPAMGNPKP----HFYLLSEIARECK------LT 187
+ ++ R+ LN+ GLM + G + F L E+ + + L
Sbjct: 160 EPLLVHWRELAGSSNAGLNINGLMAM-AGWGTDETAAARQFAKLRELRDQMESSTGISLP 218
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIF 215
+LSMGM+ D+ AIA GAT VRIG+ +F
Sbjct: 219 ELSMGMSGDYPAAIAEGATLVRIGTRLF 246
>gi|238060244|ref|ZP_04604953.1| alanine racemase [Micromonospora sp. ATCC 39149]
gi|237882055|gb|EEP70883.1| alanine racemase [Micromonospora sp. ATCC 39149]
Length = 250
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 104/229 (45%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I ++ R + V+++AV+K + + S G V EN+ QEA
Sbjct: 18 LAVGLARVRARIADACAAVGRDRTEVTMIAVTKTYPASDVLALASLGVVDMGENRDQEAA 77
Query: 63 KKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETV-SREKTASLLSLEMIKQSRFL 120
K + + FIG LQ NK +V DV+++V S +L + + + R +
Sbjct: 78 GKAAEVAAAGATPRWHFIGQLQRNKCRSVVRYADVVQSVDSVRLARALDAAALTNRDRPV 137
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVIL------CRQKYQLNVEGLMCIPPAMGNPKPHF 174
V++QV+ + + G +P L L + GLM + P P+ F
Sbjct: 138 DVFVQVSVDADPARGGALPGSVDPDAGLGPVAEAVAGAAGLRLAGLMAVAPLGWEPERAF 197
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+E+AR + LS GM+ D E+AI GAT VR+GS + G R
Sbjct: 198 ARLAEVARTFRTAHPEAVALSAGMSGDLEIAIEYGATHVRVGSALLGMR 246
>gi|169833346|ref|YP_001695046.1| YggS family pyridoxal phosphate protein [Streptococcus pneumoniae
Hungary19A-6]
gi|168995848|gb|ACA36460.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
Hungary19A-6]
Length = 223
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 111/227 (48%), Gaps = 17/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLNAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
+K+ L K+ DV IG+LQ KV +++ D + K A E+ K+S R
Sbjct: 61 FLEKYEAL-KDRDVTWHLIGTLQRRKVKDVIQFVDYFHALDSVKLAE----EIQKRSDRV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ ++QVN E K G + + + + ++ GLM + P + K F
Sbjct: 116 IKCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKA 175
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 176 TQDLQKEIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTAFF 222
>gi|295398670|ref|ZP_06808694.1| YggS family pyridoxal phosphate enzyme [Aerococcus viridans ATCC
11563]
gi|294973105|gb|EFG48908.1| YggS family pyridoxal phosphate enzyme [Aerococcus viridans ATCC
11563]
Length = 226
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 20/228 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ N +Q + I N+ + V+L+ VSK + G FAEN+ +
Sbjct: 1 MTIRNNVQSIEGIIANAQQSSALSSSDVTLICVSKYHSIDEANTVYDAGVRHFAENRPEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K + D+ IG+LQ+ KV ++++ D + R K A ++ + + +
Sbjct: 61 FQEKSAAMAD--DIVWHLIGTLQTRKVKDVINEIDYFHALDRIKLAKEINK---RADKVI 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP-HFYL--- 176
++QVN E K GI P + F+ + ++ + GLM + P + + H Y
Sbjct: 116 KCFLQVNVSGEESKHGIAPTEIAAFIEAVAEFPKVKIVGLMTMAPIDASEEEIHGYFANL 175
Query: 177 ---------LSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + C+ LSMGM+ D+ +A+A GA VR+GS IF
Sbjct: 176 RQLRDQVQAMGKAYAPCQ--HLSMGMSGDYPIAVAEGADFVRVGSAIF 221
>gi|30263902|ref|NP_846279.1| hypothetical protein BA_4039 [Bacillus anthracis str. Ames]
gi|47529332|ref|YP_020681.1| hypothetical protein GBAA_4039 [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186750|ref|YP_030002.1| hypothetical protein BAS3751 [Bacillus anthracis str. Sterne]
gi|49478440|ref|YP_037962.1| hypothetical protein BT9727_3642 [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|65321229|ref|ZP_00394188.1| COG0325: Predicted enzyme with a TIM-barrel fold [Bacillus
anthracis str. A2012]
gi|118479120|ref|YP_896271.1| hypothetical protein BALH_3530 [Bacillus thuringiensis str. Al
Hakam]
gi|165872302|ref|ZP_02216939.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0488]
gi|167636418|ref|ZP_02394717.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0442]
gi|167641121|ref|ZP_02399376.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0193]
gi|170688830|ref|ZP_02880033.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0465]
gi|170708807|ref|ZP_02899243.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0389]
gi|177654885|ref|ZP_02936602.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0174]
gi|190565832|ref|ZP_03018751.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis
Tsiankovskii-I]
gi|196035936|ref|ZP_03103338.1| conserved hypothetical protein TIGR00044 [Bacillus cereus W]
gi|196045910|ref|ZP_03113139.1| conserved hypothetical protein TIGR00044 [Bacillus cereus 03BB108]
gi|218905030|ref|YP_002452864.1| conserved hypothetical protein TIGR00044 [Bacillus cereus AH820]
gi|225865882|ref|YP_002751260.1| conserved hypothetical protein TIGR00044 [Bacillus cereus 03BB102]
gi|227813190|ref|YP_002813199.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
CDC 684]
gi|229603782|ref|YP_002868136.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0248]
gi|254683390|ref|ZP_05147250.1| hypothetical protein BantC_06015 [Bacillus anthracis str.
CNEVA-9066]
gi|254721434|ref|ZP_05183223.1| hypothetical protein BantA1_03095 [Bacillus anthracis str. A1055]
gi|254735940|ref|ZP_05193646.1| hypothetical protein BantWNA_12346 [Bacillus anthracis str. Western
North America USA6153]
gi|254739812|ref|ZP_05197505.1| hypothetical protein BantKB_02134 [Bacillus anthracis str. Kruger
B]
gi|254751002|ref|ZP_05203041.1| hypothetical protein BantV_00982 [Bacillus anthracis str. Vollum]
gi|254757940|ref|ZP_05209967.1| hypothetical protein BantA9_06520 [Bacillus anthracis str.
Australia 94]
gi|30258546|gb|AAP27765.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
Ames]
gi|47504480|gb|AAT33156.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
'Ames Ancestor']
gi|49180677|gb|AAT56053.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
Sterne]
gi|49329996|gb|AAT60642.1| conserved hypothetical protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|118418345|gb|ABK86764.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
Hakam]
gi|164711978|gb|EDR17518.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0488]
gi|167510901|gb|EDR86292.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0193]
gi|167528160|gb|EDR90947.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0442]
gi|170126292|gb|EDS95183.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0389]
gi|170667185|gb|EDT17945.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0465]
gi|172080396|gb|EDT65483.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0174]
gi|190562751|gb|EDV16717.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis
Tsiankovskii-I]
gi|195991585|gb|EDX55551.1| conserved hypothetical protein TIGR00044 [Bacillus cereus W]
gi|196023350|gb|EDX62028.1| conserved hypothetical protein TIGR00044 [Bacillus cereus 03BB108]
gi|218537784|gb|ACK90182.1| conserved hypothetical protein TIGR00044 [Bacillus cereus AH820]
gi|225787955|gb|ACO28172.1| conserved hypothetical protein TIGR00044 [Bacillus cereus 03BB102]
gi|227004092|gb|ACP13835.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
CDC 684]
gi|229268190|gb|ACQ49827.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0248]
Length = 224
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 109/232 (46%), Gaps = 26/232 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQTNLTTVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
+K+ + V FIGSLQ+ KV EI++ D + ++ R LSL Q R
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDR------LSLAKEIQKRAN 112
Query: 120 --LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
+ +IQV T E K G+ +T F+ ++ ++ V GLM + P + F
Sbjct: 113 KKVKCFIQVKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCF 172
Query: 175 YLLSEIARE----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L + +E CK +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 173 KELRMLQKEVQGLELLHAPCK--ELSMGMSNDYTIAIEEGATYIRLGTILVG 222
>gi|327314522|ref|YP_004329959.1| pyridoxal phosphate enzyme, YggS family [Prevotella denticola
F0289]
gi|326944751|gb|AEA20636.1| pyridoxal phosphate enzyme, YggS family [Prevotella denticola
F0289]
Length = 223
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 101/214 (47%), Gaps = 17/214 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+L P D V LVA+SK + I A GQ +F E++ QE +K L K D++ F
Sbjct: 11 VLGSLP-DGVRLVAISKFHPVEYIEAAYHEGQRVFGESQEQELARKVESLPK--DIEWHF 67
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NKV I +IE V K ++ + + R + V ++++ E K G
Sbjct: 68 IGHLQTNKVKYIAPYISMIEAVDSLKLLKEINKQAARYGRVINVLLELHIAEEESKYGFT 127
Query: 139 PNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNP---KPHFYLLSEIARECK-------- 185
P ++ + K NV GLM + + + + L +++ E K
Sbjct: 128 PAACRELLENGEWKELRNVHISGLMMMASNVDDRSQIRGEMTLAADLFDELKARFFADDP 187
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ S GM+ D+++A+ +T VR+G+ IFG R
Sbjct: 188 AFKERSWGMSHDYDIAVECRSTMVRVGTAIFGPR 221
>gi|226360225|ref|YP_002778003.1| hypothetical protein ROP_08110 [Rhodococcus opacus B4]
gi|226238710|dbj|BAH49058.1| hypothetical protein [Rhodococcus opacus B4]
Length = 257
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 92/227 (40%), Gaps = 14/227 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +++ + + A R VSL+ V+K R+ G F E++ QEA K
Sbjct: 27 LGAVRARLDAACLQAGRDPAEVSLLPVTKFFPESDARILYDLGCREFGESREQEATAKIA 86
Query: 67 PLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF---- 119
R + V+ IG LQ NK + I +V E+ L
Sbjct: 87 EFRTAVTDPSVRWHMIGHLQRNKAKAVAHWAYAIHSVDSERLVGALGRAAAAALEAGERP 146
Query: 120 --LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V +QV+ + Q+ G + L GLM +PP +P F L
Sbjct: 147 APLRVLLQVSLDGDPQRGGAAIADLDRLAAQVQSSPGLEYRGLMAVPPIDADPDAAFEEL 206
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+I + T+LS GMT D E A+ G+T VR+G+ + G RP
Sbjct: 207 HKIHARLRRDHPDATELSAGMTNDLEHAVRHGSTCVRVGTALLGARP 253
>gi|225703686|gb|ACO07689.1| Proline synthetase co-transcribed bacterial homolog protein
[Oncorhynchus mykiss]
Length = 282
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 113/242 (46%), Gaps = 28/242 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+G L ++ +A A+RPK LVAVSK + A G F EN +
Sbjct: 10 VGKALHAVVDRVNQAA--ARRPKTLPAVPPRLVAVSKTKPPDMVIEAYRKGHRNFGENYV 67
Query: 59 QE-AKKKWIP--LRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEM 113
E K P L +++ FIG LQ N V++++ + ++ +ETV K A ++
Sbjct: 68 NELVDKASNPQILESCPEIEWHFIGHLQKNNVNKLLGVPNLFMVETVDSAKLADKVNSSW 127
Query: 114 IK----QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIP---- 164
+ ++ L + +Q+NT E K G+ P +T + V K L+ GLM I
Sbjct: 128 QRLRAASTQKLKIMVQINTSGEESKHGLPPGETVNTVKHILSKCSALHFSGLMTIGRYGY 187
Query: 165 PAMGNPKPHF-YLLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
P P F LLS C + +LSMGM+ DFE AI G+T+VR+GS IFG
Sbjct: 188 DLADGPNPDFQALLSRRQEVCASLQLPLEDVELSMGMSTDFEHAIEVGSTNVRVGSTIFG 247
Query: 217 ER 218
R
Sbjct: 248 NR 249
>gi|47207637|emb|CAF90890.1| unnamed protein product [Tetraodon nigroviridis]
Length = 276
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 98/193 (50%), Gaps = 24/193 (12%)
Query: 49 GQVIFAENKLQEAKKKW---IPLRKEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSRE 103
GQ F EN + E K + L ++Q FIG LQ N V++++ + ++ETV
Sbjct: 83 GQRSFGENYVNELLDKASDPLILGSCPEIQWHFIGHLQKNNVNKLLGVPNLHLVETVDSV 142
Query: 104 KTASLL--SLEMIKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFV-ILCRQKYQLNVE 158
K A + S + I+ + + L V +QVNT E K G+ P +T D V + L+
Sbjct: 143 KLADKVNSSWQRIRGASPQRLKVMVQVNTSGEQSKHGLPPEETVDAVRHILSHCPALHFS 202
Query: 159 GLMCIPP-----AMGNPKPHF-YLLSEIARECKLTK-------LSMGMTRDFELAIASGA 205
GLM I ++G P P F LLS C+ K LSMGM+ DFE AI GA
Sbjct: 203 GLMTIGRYGYDLSLG-PNPDFQMLLSHRQEVCEALKIPQEEVELSMGMSTDFEHAIEVGA 261
Query: 206 TSVRIGSGIFGER 218
TSVR+GS IFG R
Sbjct: 262 TSVRVGSIIFGNR 274
>gi|324327799|gb|ADY23059.1| hypothetical protein YBT020_19155 [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 224
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQKNLTTVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
+K+ + V FIGSLQ+ KV EI++ D + ++ R LSL Q R
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDR------LSLAKEIQKRAD 112
Query: 120 --LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP----- 172
+ +IQV T E K G+ +T F+ ++ ++ V GLM + P +
Sbjct: 113 KKVKCFIQVKTSSEESKQGLAIEETVSFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCF 172
Query: 173 -HFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+L +E +L +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 173 KTLRMLQTKVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVG 222
>gi|315221955|ref|ZP_07863866.1| pyridoxal phosphate enzyme, YggS family [Streptococcus anginosus
F0211]
gi|315188921|gb|EFU22625.1| pyridoxal phosphate enzyme, YggS family [Streptococcus anginosus
F0211]
Length = 223
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 96/206 (46%), Gaps = 15/206 (7%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R K+SV ++AV+K VDS + + G EN++ + +K+ L+ E V IG
Sbjct: 21 ANRSKNSVEVIAVTKYVDSSTAKELVKAGIHHIGENRVDKFLEKYQALKDER-VIWHLIG 79
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+LQ KV ++++ D + K A ++ + + ++QVN E K G
Sbjct: 80 TLQRRKVKDVINYVDYFHALDSVKLAQEINK---RAEHIIKCFLQVNISKEASKHGFAVE 136
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK-----------LTKL 189
+ + + + + GLM + P + + + + + T L
Sbjct: 137 EIDTILPELEKLENIQIVGLMTMAPIEADEAELNVMFQQAYQLQQRLQRKQLPNMPFTDL 196
Query: 190 SMGMTRDFELAIASGATSVRIGSGIF 215
SMGM+RD+ +AIA+G+T VRIG+ F
Sbjct: 197 SMGMSRDYTIAIANGSTFVRIGTAFF 222
>gi|52141588|ref|YP_085241.1| hypothetical protein BCZK3659 [Bacillus cereus E33L]
gi|51975057|gb|AAU16607.1| conserved hypothetical protein [Bacillus cereus E33L]
Length = 224
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 109/232 (46%), Gaps = 26/232 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQTNLTTVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
+K+ + V FIGSLQ+ KV EI++ D + ++ R LSL Q R
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDR------LSLAKEIQKRAN 112
Query: 120 --LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
+ +IQV T E K G+ +T F+ ++ ++ V GLM + P + F
Sbjct: 113 KKVKCFIQVKTSSEESKQGLAIEETVTFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCF 172
Query: 175 YLLSEIARE----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L + +E CK +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 173 KELRMLQKEVQGLELLHAPCK--ELSMGMSNDYTIAIEEGATYIRLGTILVG 222
>gi|149006734|ref|ZP_01830420.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
gi|147761649|gb|EDK68613.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
Length = 223
Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 17/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSANRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
+K+ L K+ DV IG+LQ KV +++ D + K A E+ K+S R
Sbjct: 61 FLEKYEAL-KDRDVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAG----EIQKRSDRV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ ++QVN E K G + + + ++ GLM + P + K F
Sbjct: 116 IKCFLQVNISKEESKHGFSREELLEILPELAGLDKIEYVGLMTMAPFEASSEQLKEIFKA 175
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 176 AQDLQREIQEKQIPNIPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|302674964|ref|XP_003027166.1| hypothetical protein SCHCODRAFT_61244 [Schizophyllum commune H4-8]
gi|300100852|gb|EFI92263.1| hypothetical protein SCHCODRAFT_61244 [Schizophyllum commune H4-8]
Length = 280
Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 122/271 (45%), Gaps = 65/271 (23%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC----GQVIFAEN 56
+ L + LQ + +++ +A A P +LVAVSK + + L+C GQ F EN
Sbjct: 12 LELLDNLQDIRDRVK-AASGASNP----TLVAVSKYKPASDV---LACFEHAGQRDFGEN 63
Query: 57 KLQE--AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLS-- 110
+QE K K +P W FIG+LQSNK +V++ I+T++ K A+LL+
Sbjct: 64 YVQELVDKAKQLPAEIRW----HFIGTLQSNKSKTLVAIPNLHTIQTLTSTKAANLLNKA 119
Query: 111 -LEMIKQSRFLPVYIQVNTGYEIQKSGIMP-------------NQTKDFVILCRQKYQ-- 154
E R L V IQVNT E KSG+ P T + V L +
Sbjct: 120 LSEAGDAQRRLNVLIQVNTSGEENKSGLPPLTSTDATLTQTDAADTHELVKLAVHVLEHC 179
Query: 155 --LNVEGLMCIPP------AMGNPKPHFY---LLSEIARECKLTK--------------- 188
L ++GLM I A + H + L + A + L
Sbjct: 180 PFLRLQGLMTIGSIEQSINAKEGEENHDFKTLLATRDALQAHLGARFADKTAAYGEEGRL 239
Query: 189 -LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+SMGM+ DFE A+ +G+ VR+G+GIFG R
Sbjct: 240 LVSMGMSADFEAALRAGSDIVRVGTGIFGGR 270
>gi|315453855|ref|YP_004074125.1| Alanine racemase domain-containing protein [Helicobacter felis ATCC
49179]
gi|315132907|emb|CBY83535.1| Alanine racemase domain protein [Helicobacter felis ATCC 49179]
Length = 218
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 111/239 (46%), Gaps = 45/239 (18%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L+ Q IE A LA V L+AVSK ++++ +CGQ F EN +QE
Sbjct: 1 MELKKRLENLLQCIE-KARLAYSRHHIVQLIAVSKNATIEQVQGLYACGQRAFGENYIQE 59
Query: 61 AKKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSL-------------FDVIETVSREK 104
+ K L EW + +G LQ NK+++++ L I T ++E
Sbjct: 60 LQHKSTTLENLPLEWHM----LGPLQHNKINKLLELKPALLHSLHSLELAQAINTRAKEP 115
Query: 105 TASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCI 163
+LL QVN E QKSG+ + + ++ +++++GLM I
Sbjct: 116 LKALL---------------QVNIAGETQKSGVSAERALEIYAQIQETCPKISLQGLMVI 160
Query: 164 PPAMGNPKPHFYLLSEIAR------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
P G + + S+ + K+ LSMGM+ DFELAIA GA VRIGS +F
Sbjct: 161 GPLGGMEAQNEKVFSQAKNLFDKLPDAKV--LSMGMSGDFELAIAYGANLVRIGSLLFA 217
>gi|288926315|ref|ZP_06420239.1| pyridoxal phosphate enzyme, YggS family [Prevotella buccae D17]
gi|288336920|gb|EFC75282.1| pyridoxal phosphate enzyme, YggS family [Prevotella buccae D17]
Length = 222
Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 101/216 (46%), Gaps = 17/216 (7%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL 76
+L P + V LVAVSK +++I A + GQ +F E+ QE + K L + D++
Sbjct: 10 HTVLGSLP-EGVRLVAVSKYHPTERIFEAYNEGQRLFGESHEQELRHKVEALPR--DIEW 66
Query: 77 RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG 136
FIG LQ+NKV I +IE V + + + + R + V ++++ E K G
Sbjct: 67 HFIGHLQTNKVKYIAPYIAMIEAVDSLRLLREIEKQAARCDRTIRVLLELHIAEEATKYG 126
Query: 137 IMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLTKL-- 189
+ + + + R+ + + GLM + + F L + E K
Sbjct: 127 LSLDDCRALLDGGEWREMTHVQICGLMMMASNTDDKLRIAREFDLAARFFDEVKARHFAG 186
Query: 190 -------SMGMTRDFELAIASGATSVRIGSGIFGER 218
S GM+ D+ +AI G+T VR+G+GIFGER
Sbjct: 187 NDNFCERSWGMSHDYRIAIDHGSTLVRVGTGIFGER 222
>gi|225870031|ref|YP_002745978.1| hypothetical protein SEQ_0622 [Streptococcus equi subsp. equi 4047]
gi|225699435|emb|CAW92926.1| conserved hypothetical protein [Streptococcus equi subsp. equi
4047]
Length = 223
Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 103/208 (49%), Gaps = 19/208 (9%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A RP++SVS++AV+K VD + G AEN++ + K+ L K+ V FIG
Sbjct: 21 ANRPENSVSVIAVTKYVDKAVAGQLIDMGIEHIAENRIDKFLDKYEAL-KDRQVTWHFIG 79
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV--YIQVNTGYEIQKSGIM 138
+LQ KV E+++ D + K L+LE+ K++ PV ++QVN E K G
Sbjct: 80 TLQRRKVKEVINKVDYFHALDSVK----LALEIEKRADH-PVKCFLQVNISEEESKHGFK 134
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP-----------HFYLLSEIARECKLT 187
+ + + +L++ G+M + P + + L S+ + T
Sbjct: 135 IAELDAAIEEISKMEKLHLVGIMTMAPIDASQQELRSIFQKANQLRKNLQSKKRKNMPFT 194
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIF 215
+LSMGM+ D+ +AI G+T VRIG+ F
Sbjct: 195 ELSMGMSNDYPIAIQEGSTFVRIGTSFF 222
>gi|50287463|ref|XP_446161.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525468|emb|CAG59085.1| unnamed protein product [Candida glabrata]
Length = 265
Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 105/214 (49%), Gaps = 26/214 (12%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQS 84
SV L+AVSK+ + +++ G F EN +QE K + +P D++ FIG LQ+
Sbjct: 49 SVLLLAVSKLKPASDVQILYDHGVRDFGENYVQELIEKAELLPT----DIRWHFIGGLQT 104
Query: 85 NK---VSEIVSLFDVIETVSREKTASLLSLEMIK---QSRFLPVYIQVNTGYEIQKSGIM 138
NK ++++ +LF V ETV K A L+ K + + IQ+NT E QKSG++
Sbjct: 105 NKCKDLAKVPNLFSV-ETVDSLKKAKKLNEARGKYQPDANAISCNIQINTSQEDQKSGLV 163
Query: 139 P-NQTKDFV--ILCRQKYQLNVEGLMCI-----PPAMGNPKPHFYLLSEIARECKLT--- 187
++ + V L + + GLM I G F L E +
Sbjct: 164 DEDEVYEIVKFFLSEDAKFVKLNGLMTIGSWEVSHEEGEENKDFSKLVEWKSKIDSKFGT 223
Query: 188 --KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
KLSMGM+ DF+ AI G + VRIG+ IFG RP
Sbjct: 224 DLKLSMGMSADFKQAIRQGTSEVRIGTDIFGTRP 257
>gi|167755110|ref|ZP_02427237.1| hypothetical protein CLORAM_00614 [Clostridium ramosum DSM 1402]
gi|237733463|ref|ZP_04563944.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|167705160|gb|EDS19739.1| hypothetical protein CLORAM_00614 [Clostridium ramosum DSM 1402]
gi|229383498|gb|EEO33589.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 213
Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 92/198 (46%), Gaps = 11/198 (5%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+ LVA +K V ++I G F EN++Q +K+ + + IG+LQ NK
Sbjct: 17 NAKLVAATKYVGIEEINELEKLGVKYFGENRVQAFLEKYEKYHGAQEFHM--IGTLQPNK 74
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V I+ +I ++ + + K +P+ IQVN E K G + +D
Sbjct: 75 VKYIIDKVSLIHSIDSYSLIKEVEKQAKKHDLKMPILIQVNVAKEESKHGFAVEEIEDVF 134
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYL---------LSEIARECKLTKLSMGMTRDF 197
++ L V+GLM + P + + Y L+ E ++T+LSMGM+ D+
Sbjct: 135 DYLKECPHLIVKGLMMMAPHIDSNDTAVYFKQTKELFDQLNCKYSEFEMTELSMGMSNDY 194
Query: 198 ELAIASGATSVRIGSGIF 215
A+ GAT +R+GS +F
Sbjct: 195 HEALKYGATMIRVGSALF 212
>gi|225704980|gb|ACO08336.1| Proline synthetase co-transcribed bacterial homolog protein
[Oncorhynchus mykiss]
Length = 282
Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 112/242 (46%), Gaps = 28/242 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+G L ++ +A A+RPK LVAVSK + A G F EN +
Sbjct: 10 VGKALHAVVDRVNQAA--ARRPKTLPAVPPRLVAVSKTKPPDMVIEAYRKGHRNFGENYV 67
Query: 59 QE-AKKKWIP--LRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEM 113
E K P L +++ FIG LQ N V+ ++ + ++ +ETV K A ++
Sbjct: 68 NELVDKASNPQILESCPEIEWHFIGHLQKNNVNRLLGVPNLFMVETVDSAKLADKVNSSW 127
Query: 114 IK----QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ-LNVEGLMCIP---- 164
+ ++ L + +Q+NT E K G+ P +T + V K L+ GLM I
Sbjct: 128 QRLRAASTQKLKIMVQINTSGEESKHGLPPGETVNTVKHILSKCSVLHFSGLMTIGRYGY 187
Query: 165 PAMGNPKPHF-YLLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
P P F LLS C + +LSMGM+ DFE AI G+T+VR+GS IFG
Sbjct: 188 DLADGPNPDFQALLSRRQEVCASLQLPLEDVELSMGMSTDFEHAIEVGSTNVRVGSTIFG 247
Query: 217 ER 218
R
Sbjct: 248 NR 249
>gi|195977733|ref|YP_002122977.1| pyridoxaL 5'-phosphate dependent enzyme class III family
[Streptococcus equi subsp. zooepidemicus MGCS10565]
gi|195974438|gb|ACG61964.1| pyridoxaL 5'-phosphate dependent enzyme class III family
[Streptococcus equi subsp. zooepidemicus MGCS10565]
Length = 224
Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 103/208 (49%), Gaps = 19/208 (9%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A RP++SVS++AV+K VD + G AEN++ + K+ L K+ V FIG
Sbjct: 22 ANRPENSVSVIAVTKYVDKAVAGQLIDMGIEHIAENRIDKFLDKYEAL-KDRQVTWHFIG 80
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV--YIQVNTGYEIQKSGIM 138
+LQ KV E+++ D + K L+LE+ K++ PV ++QVN E K G
Sbjct: 81 TLQRRKVKEVINKVDYFHALDSVK----LALEIEKRADH-PVKCFLQVNISEEESKHGFK 135
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP-----------HFYLLSEIARECKLT 187
+ + + +L++ G+M + P + + L S+ + T
Sbjct: 136 IAELDAAIEEISKMEKLHLVGIMTMAPIDASQQELRSIFQKANQLRKNLQSKKRKNMPFT 195
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIF 215
+LSMGM+ D+ +AI G+T VRIG+ F
Sbjct: 196 ELSMGMSNDYPIAIQEGSTFVRIGTSFF 223
>gi|206970984|ref|ZP_03231935.1| conserved hypothetical protein TIGR00044 [Bacillus cereus AH1134]
gi|206733756|gb|EDZ50927.1| conserved hypothetical protein TIGR00044 [Bacillus cereus AH1134]
Length = 224
Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQENLVIVNEAIKESCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
+K+ + V FIGSLQ+ KV EI++ D + ++ R LSL Q R
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDR------LSLAKEIQKRAD 112
Query: 120 --LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP----- 172
+ +IQV T E K G+ + F+ ++ ++ V GLM + P +
Sbjct: 113 KKVKCFIQVKTSSEESKQGLAIEEVVSFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCF 172
Query: 173 -HFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+L +E +L +LSMGM+ D+++AI GAT +R+G+ + G
Sbjct: 173 KELRMLQTEVQELELLHAPCKELSMGMSNDYKIAIEEGATYIRLGTILVG 222
>gi|302868921|ref|YP_003837558.1| alanine racemase domain-containing protein [Micromonospora
aurantiaca ATCC 27029]
gi|302571780|gb|ADL47982.1| alanine racemase domain protein [Micromonospora aurantiaca ATCC
27029]
Length = 248
Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 92/215 (42%), Gaps = 21/215 (9%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLR 77
R +D V+LVAV+K + + G EN+ QEA K + W
Sbjct: 36 RQRDEVTLVAVTKTYPAADVVALAGLGVSDVGENRDQEAAPKAEAVAAAGAAPRW----H 91
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK-QSRFLPVYIQVNTGYEIQKSG 136
FIG LQ NK +V DV+++V + A+ L + R L V +QV+ + + G
Sbjct: 92 FIGQLQRNKARSVVRYADVVQSVDSVRLAAALDAAAGAVRDRPLDVLVQVSIDGDPARGG 151
Query: 137 IMPNQTK------DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL---- 186
+P L + GLM + P P F L+E+A +
Sbjct: 152 ALPGAADPQRGLDPVAAAVAGADGLRLAGLMAVAPLGWEPDRAFARLAEVAAALRADHPD 211
Query: 187 -TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
T LS GM+ D E AI GAT VR+GS + G RP
Sbjct: 212 ATVLSAGMSGDLESAIGHGATHVRVGSALLGMRPA 246
>gi|15903552|ref|NP_359102.1| hypothetical protein spr1509 [Streptococcus pneumoniae R6]
gi|116516370|ref|YP_816934.1| YlmE protein [Streptococcus pneumoniae D39]
gi|15459170|gb|AAL00313.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076946|gb|ABJ54666.1| YlmE protein [Streptococcus pneumoniae D39]
Length = 223
Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 17/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVIKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
+K+ L K+ DV IG+LQ KV +++ D + K A E+ K+S R
Sbjct: 61 FLEKYEAL-KDRDVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAG----EIQKRSDRV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ ++QVN E K G + + + + ++ GLM + P + K F
Sbjct: 116 IKCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKA 175
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 176 AQDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|302927051|ref|XP_003054417.1| hypothetical protein NECHADRAFT_75105 [Nectria haematococca mpVI
77-13-4]
gi|256735358|gb|EEU48704.1| hypothetical protein NECHADRAFT_75105 [Nectria haematococca mpVI
77-13-4]
Length = 259
Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 105/223 (47%), Gaps = 35/223 (15%)
Query: 27 SVSLVAVSKMVDSKKIRVALS---CGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
+V LVAVSK+ + I +AL Q F EN QE +K L VQ FIG
Sbjct: 37 NVRLVAVSKLKPANDI-LALHKAPTSQTHFGENYAQELTQKAALLPNT--VQWHFIGG-H 92
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLE----MIKQSRF--LPVYIQVNTGYEIQKSGI 137
+++I +LF + +V K A LL+ + Q L V++QVNT E KSG
Sbjct: 93 CKSLAKIPNLF-CVSSVDTSKKAQLLNTTRGNLLASQPDLSKLGVHVQVNTSGEEAKSGC 151
Query: 138 MPNQTKDFVILCRQKY----QLNVEGLMCI-------PPAMGNPKPHFYLLSE----IAR 182
P D V LCR+ L + GLM I N F L +A+
Sbjct: 152 APG--ADTVALCREIVDTCPNLQLLGLMTIGAIARSKATTAENENEDFLTLKAQRDLVAK 209
Query: 183 ECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E L++ LSMGM+ DFE A+ G+ VR+GS IFG+RP +
Sbjct: 210 ELGLSEESLELSMGMSEDFEGAVRLGSNEVRVGSTIFGQRPAK 252
>gi|329313856|gb|AEB88269.1| Possible enzyme with a TIM-barrel fold [Staphylococcus aureus
subsp. aureus T0131]
Length = 224
Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 104/209 (49%), Gaps = 34/209 (16%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNK 86
+++AV+K V ++ + A G F EN+L+ KK+ +P D + FIGSLQS K
Sbjct: 28 NVIAVTKYVTIERAKEAYEAGIRHFGENRLEGFFQKKEALP----SDAVIHFIGSLQSRK 83
Query: 87 VSEIVSLFDVIETVSREKTASLLSL--EMIKQSRF-LPVYIQVNTGYEIQKSGIMPNQTK 143
V ++++ D + R LSL E+ K++ + ++QVN E K GI
Sbjct: 84 VKDVINDVDYFHALDR------LSLAKEINKRAEHKIKYFLQVNVSGEASKHGIALEDVD 137
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK--------------- 188
F+ ++ ++ + GLM + P + Y+ S + ++ +L K
Sbjct: 138 QFIDDLKKYDKIEIVGLMTMAPLTDDEA---YIRS-LFKQLRLKKEEIQRLNLEYAPCDE 193
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGE 217
LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 194 LSMGMSNDYLIAVEEGATFVRIGTKLVGE 222
>gi|82750795|ref|YP_416536.1| hypothetical protein SAB1052 [Staphylococcus aureus RF122]
gi|82656326|emb|CAI80741.1| conserved hypothetical protein [Staphylococcus aureus RF122]
Length = 224
Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 104/209 (49%), Gaps = 34/209 (16%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNK 86
+++AV+K V ++ + A G F EN+L+ KK+ +P D + FIGSLQS K
Sbjct: 28 NVIAVTKYVTIERAKEAYEAGIRHFGENRLEGFFQKKEALP----SDAVIHFIGSLQSRK 83
Query: 87 VSEIVSLFDVIETVSREKTASLLSL--EMIKQSRF-LPVYIQVNTGYEIQKSGIMPNQTK 143
V ++++ D + R LSL E+ K++ + ++QVN E K GI
Sbjct: 84 VKDVINYVDYFHALDR------LSLAKEINKRAEHKIKCFLQVNVSGEASKHGIALEDVD 137
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK--------------- 188
F+ ++ ++ + GLM + P + Y+ S + ++ +L K
Sbjct: 138 QFIDDLKKYDKVEIVGLMTMAPLTDDEA---YIRS-LFKQLRLKKEEIQRLNLEYAPCDE 193
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGE 217
LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 194 LSMGMSNDYLIAVDEGATFVRIGTKLVGE 222
>gi|68535830|ref|YP_250535.1| hypothetical protein jk0755 [Corynebacterium jeikeium K411]
gi|68263429|emb|CAI36917.1| conserved hypothetical protein [Corynebacterium jeikeium K411]
Length = 251
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 12/205 (5%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
L+ ++K + +++ G EN+ QEA+ K L + +Q +G +Q+ K
Sbjct: 47 GADLLPITKFHPVEDVKLLAQLGVTAVGENREQEARDKHAQL-ADTGLQFHMVGQVQTKK 105
Query: 87 VSEI------VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+ + V D ++ ++ + L+LE ++ LPV +Q + + Q+ G +
Sbjct: 106 ANSVARWAAAVHTLDSLKLLNALDRGAALALERGDRNDRLPVLLQFSADGDPQRGGAVEA 165
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY----LLSEIA-RECKLTKLSMGMTR 195
+ L + GLM +PP +P F L+ I R S GM+
Sbjct: 166 DIDELADAVAAAENLELRGLMTVPPLDADPAAVFARGRKLVERITDRAVGAPVYSAGMSG 225
Query: 196 DFELAIASGATSVRIGSGIFGERPC 220
D E+AIA G+T VR+G+ I G RP
Sbjct: 226 DLEIAIAEGSTLVRVGTDIMGARPV 250
>gi|315504609|ref|YP_004083496.1| alanine racemase domain protein [Micromonospora sp. L5]
gi|315411228|gb|ADU09345.1| alanine racemase domain protein [Micromonospora sp. L5]
Length = 248
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 92/215 (42%), Gaps = 21/215 (9%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-----EWDVQLR 77
R +D V+LVAV+K + + G EN+ QEA K + W
Sbjct: 36 RQRDEVTLVAVTKTYPAADVVALAGLGVSDVGENRDQEAAPKAEAVAAAGAAPRW----H 91
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK-QSRFLPVYIQVNTGYEIQKSG 136
FIG LQ NK +V DV+++V + A+ L + R L V +QV+ + + G
Sbjct: 92 FIGQLQRNKARSVVRYADVVQSVDSVRLAAALDAAAGAVRDRPLDVLVQVSIDGDPARGG 151
Query: 137 IMPNQTK------DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL---- 186
+P L + GLM + P P F L+E+A +
Sbjct: 152 ALPGAADPQRGLDPVAAAVAGADGLRLAGLMAVAPLGWEPDRAFARLAEVAAALRADHPD 211
Query: 187 -TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
T LS GM+ D E AI GAT VR+GS + G RP
Sbjct: 212 ATVLSAGMSGDLESAIGHGATHVRVGSALLGMRPA 246
>gi|325270978|ref|ZP_08137565.1| proline synthetase associated protein [Prevotella multiformis DSM
16608]
gi|324986775|gb|EGC18771.1| proline synthetase associated protein [Prevotella multiformis DSM
16608]
Length = 223
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 16/207 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
D V LVA+SK ++ I A GQ +F E++ QE +K L K D++ FIG LQ+N
Sbjct: 17 DGVKLVAISKFHPAEYIEAAYREGQRLFGESQEQELARKVECLPK--DIEWHFIGHLQTN 74
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV I +IE V K ++ + + R + V ++++ E K G P ++
Sbjct: 75 KVKYIAPYISMIEAVDSLKLLKEINKQAARHGRVIRVLLELHIAEEESKYGFSPAACREL 134
Query: 146 VI--LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK---------LTKLSM 191
+ R +++ GLM + + + + L +++ E K + S
Sbjct: 135 LENGEWRALRNVHISGLMMMASNVEDRSQIRREMTLAADLFDELKAKYFADDPEFKERSW 194
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D+++A+ +T VR+G+ IFG R
Sbjct: 195 GMSHDYDIAVECRSTMVRVGTAIFGPR 221
>gi|315304082|ref|ZP_07874486.1| pyridoxal phosphate enzyme, YggS family [Listeria ivanovii FSL
F6-596]
gi|313627548|gb|EFR96277.1| pyridoxal phosphate enzyme, YggS family [Listeria ivanovii FSL
F6-596]
Length = 229
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 115/230 (50%), Gaps = 19/230 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ L+ ++IE + + R + +V+LVAV+K +D+ ++ G F EN+
Sbjct: 1 MTKQANLEKVTKQIELACAESNREESNVTLVAVTKTIDATEMIELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRF 119
K L + D+ +IGSLQ+ KV +++ + + ++ R + L+ E+ K+ ++
Sbjct: 61 FLDKTTQLADKNDICWHYIGSLQTRKVKDVLPQINYLHSLDR----ATLAKEIEKRATKP 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ-LNVEGLMCIPPAMGNPKP-H--FY 175
+ ++QVN E K G + F L +Q + + GLM + P + + H F+
Sbjct: 117 VKCFLQVNISGEESKHGFSREEALSF--LQEANFQFIEIVGLMTMAPITNSEQELHHVFH 174
Query: 176 LLSEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
L ++ +E T+LSMGMT DF +AI GAT +R+G + +
Sbjct: 175 ELKQLQQEIHALQLKNIPCTELSMGMTNDFGIAITEGATFIRVGRALVSD 224
>gi|322412243|gb|EFY03151.1| pyridoxaL 5'-phosphate dependent enzyme class III family protein
[Streptococcus dysgalactiae subsp. dysgalactiae ATCC
27957]
Length = 223
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 103/212 (48%), Gaps = 27/212 (12%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A RP+ SVS++AV+K VDS + G AEN++ + K+ L K+ V IG
Sbjct: 21 AHRPEHSVSVIAVTKYVDSTIAGQLIDTGIEHIAENRVDKFLDKYEAL-KDRSVTWHLIG 79
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV--YIQVNTGYEIQKSGIM 138
+LQ KV E+++ D + K AS E+ K++ PV ++QVN E K G
Sbjct: 80 TLQRRKVKEVINSVDYFHALDSVKLAS----EIEKRADH-PVKCFLQVNISEEDSKHGFK 134
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK------------- 185
++ + + + + + GLM + PA + + ++ I RE
Sbjct: 135 VSEIEVAIEEISKMENIQLVGLMTMAPADASQER----IASIFREANQLRKNLQSKKRKN 190
Query: 186 --LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
T+LSMGM+ D+ +AI G+T VRIG+ F
Sbjct: 191 MPFTELSMGMSGDYLIAIQEGSTFVRIGTSFF 222
>gi|225868961|ref|YP_002744909.1| hypothetical protein SZO_13950 [Streptococcus equi subsp.
zooepidemicus]
gi|225702237|emb|CAW99985.1| conserved hypothetical protein [Streptococcus equi subsp.
zooepidemicus]
Length = 223
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 103/208 (49%), Gaps = 19/208 (9%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A RP++SVS++AV+K VD + G AEN++ + K+ L K+ V FIG
Sbjct: 21 ANRPENSVSVIAVTKYVDKAVAGQLIDMGIEHIAENRIDKFLDKYEAL-KDRQVTWHFIG 79
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV--YIQVNTGYEIQKSGIM 138
+LQ KV E+++ D + K L+LE+ K++ PV ++QVN E K G
Sbjct: 80 TLQRRKVKEVINKVDYFHALDSVK----LALEIEKRADH-PVKCFLQVNISEEESKHGFK 134
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP-----------HFYLLSEIARECKLT 187
+ + + +L++ G+M + P + + L S+ + T
Sbjct: 135 IAELDAAIEEISKVEKLHLVGIMTMAPIDASQQELRSIFQKANQLRKNLQSKKRKNMPFT 194
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIF 215
+LSMGM+ D+ +AI G+T VRIG+ F
Sbjct: 195 ELSMGMSNDYPIAIQEGSTFVRIGTSFF 222
>gi|198414039|ref|XP_002124883.1| PREDICTED: similar to Proline synthetase co-transcribed bacterial
homolog protein [Ciona intestinalis]
Length = 250
Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 98/207 (47%), Gaps = 19/207 (9%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQE-AKKKWIPLRKEW--DVQLRFIGSLQSNK 86
LVAVSK I+ A GQ F EN L+E K P E D++ +IG+ Q
Sbjct: 37 LVAVSKTKPLSLIKQAYDAGQRHFGENYLKELVVKSNSPDMAELCPDIKWHYIGTFQKKM 96
Query: 87 VSEI--VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
S + VS ++ET++ K A ++ K + L V +QVNT E KSG+ ++ +
Sbjct: 97 ASVLMRVSNLHMLETLNGAKEADAVNSRW-KSTEPLQVLVQVNTSGEESKSGVTASECTE 155
Query: 145 FV-ILCRQKYQLNVEGLMCIPP----AMGNPKPHFYLLSEIAREC--------KLTKLSM 191
+ R L + GLM I P P F L+E + K +LSM
Sbjct: 156 LAGHIHRNCSNLKLAGLMTIGSFGYDCTQGPNPDFTKLAECRKTVCKELGIPEKDLQLSM 215
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D+ AI G+T VR+G+ IFG R
Sbjct: 216 GMSHDYTHAIEMGSTMVRVGTAIFGAR 242
>gi|315194074|gb|EFU24467.1| hypothetical protein CGSSa00_05193 [Staphylococcus aureus subsp.
aureus CGS00]
Length = 224
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 104/209 (49%), Gaps = 34/209 (16%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNK 86
+++AV+K V ++ + A G F EN+L+ KK+ +P D + FIGSLQS K
Sbjct: 28 NVIAVTKYVTIERAKEAYEAGIRHFGENRLEGFFQKKEALP----SDAVIHFIGSLQSRK 83
Query: 87 VSEIVSLFDVIETVSREKTASLLSL--EMIKQSRF-LPVYIQVNTGYEIQKSGIMPNQTK 143
V ++++ D + R LSL E+ K++ + ++QVN E K GI
Sbjct: 84 VKDVINDVDYFHALDR------LSLAKEINKRAEHKIKCFLQVNVSGETSKHGIALEDVD 137
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK--------------- 188
F+ ++ ++ + GLM + P + Y+ S + ++ +L K
Sbjct: 138 QFIDDLKKYDKIEIVGLMTMAPLTDDEA---YIRS-LFKQLRLKKEEIQRLNLEYAPCDE 193
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGE 217
LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 194 LSMGMSNDYLIAVEEGATFVRIGTKLVGE 222
>gi|118377078|ref|XP_001021721.1| conserved hypothetical protein [Tetrahymena thermophila]
gi|89303487|gb|EAS01475.1| conserved hypothetical protein [Tetrahymena thermophila SB210]
Length = 262
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 107/211 (50%), Gaps = 13/211 (6%)
Query: 16 NSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQ 75
NSAI ++V SK + ++ A G F EN + E K L + D++
Sbjct: 17 NSAIKNSTKTSRCTIVGASKTKPLELLQQAYDAGLRHFGENYVDEIVTKAPKLPQ--DIK 74
Query: 76 LRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ 133
+IG LQ+NK+ +++ +L+ ++ET+ K A+ ++ E K S+ L V IQV T E +
Sbjct: 75 WHYIGHLQTNKIKQVLVPNLY-MLETIDSIKLATKVNKECQKLSKKLKVLIQVKTSTEDR 133
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLS-EIARECKLTK--- 188
S +F++ Q L GLM I N Y L EI + KL K
Sbjct: 134 VSTEDAPALVEFIMT--QCPNLEFSGLMTIGYEGDENAFIQLYDLKIEICEKFKLNKDEI 191
Query: 189 -LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM++DFE AI G+T+VRIG+ IFG R
Sbjct: 192 ELSMGMSQDFEKAILYGSTNVRIGTTIFGAR 222
>gi|225619384|ref|YP_002720610.1| hypothetical protein BHWA1_00441 [Brachyspira hyodysenteriae WA1]
gi|225214203|gb|ACN82937.1| hypothetical protein BHWA1_00441 [Brachyspira hyodysenteriae WA1]
Length = 231
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 111/226 (49%), Gaps = 14/226 (6%)
Query: 5 NKLQVFKQKIENSAILAKRPKD---SVSLVAVSKMVDSKKIRVALSCG-QVIFAENKLQE 60
NK+ +I N+ +AK+ + ++++AVSK I+ LS + E+K Q
Sbjct: 4 NKILERYNEISNNINIAKQKYNIEYDINIIAVSKYSSIDTIKEFLSLDIDLPLGESKAQS 63
Query: 61 AKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+ + + + + +V+ FIG +QSNKV IV D+I++V + A ++ E +K ++
Sbjct: 64 LRDRAGEIAQFKNNVKWHFIGRIQSNKVKYIVRYADLIQSVDSIEIAECINKEALKNNKI 123
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ +Q N E QK G N D + ++++GLM I N + F
Sbjct: 124 QDILLQFNISDEDQKGGFNLNDYLDVYKNIIKMSNISIKGLMGIGKDSENSLLIEEEFEK 183
Query: 177 LSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L+ I + L+ LSMGM+ D+ELAI G+ +RIGS G
Sbjct: 184 LNTIYKSINNQYNNPLSILSMGMSSDYELAIKHGSNMIRIGSSFLG 229
>gi|315609071|ref|ZP_07884041.1| YggS family pyridoxal phosphate enzyme [Prevotella buccae ATCC
33574]
gi|315249275|gb|EFU29294.1| YggS family pyridoxal phosphate enzyme [Prevotella buccae ATCC
33574]
Length = 222
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 17/216 (7%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL 76
+L P + V LVAVSK +++I A + GQ +F E+ QE + K L + D++
Sbjct: 10 HTVLGSLP-EGVRLVAVSKYHPAERIFEAYNEGQRLFGESHEQELRHKVEALPR--DIEW 66
Query: 77 RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG 136
FIG LQ+NKV I +IE V + + + + R + V ++++ E K G
Sbjct: 67 HFIGHLQTNKVKYIAPYIAMIEAVDSLRLLREIEKQAARCDRTIRVLLELHIAEEATKYG 126
Query: 137 IMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLTKL-- 189
+ + + + R+ + + GLM + + F L + E K
Sbjct: 127 LSLDDCRALLDGGEWREMTHVQICGLMMMASNTDDKLRIAREFDLAARFFDEVKARHFAG 186
Query: 190 -------SMGMTRDFELAIASGATSVRIGSGIFGER 218
S GM+ D+ +A+ G+T VR+G+GIFGER
Sbjct: 187 NDNFCERSWGMSHDYRIAVDHGSTLVRVGTGIFGER 222
>gi|298373203|ref|ZP_06983193.1| pyridoxal phosphate enzyme, YggS family [Bacteroidetes oral taxon
274 str. F0058]
gi|298276107|gb|EFI17658.1| pyridoxal phosphate enzyme, YggS family [Bacteroidetes oral taxon
274 str. F0058]
Length = 225
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 19/214 (8%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
IL P + V LV VSK + I A GQ F E+++QE +K L K D++ F
Sbjct: 9 ILGDLP-EGVRLVCVSKFHPVEAICEAYEQGQRDFGESRVQELVQKQPNLPK--DIRWHF 65
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK+ IV +I++V + + + + R + + ++++ E QK G
Sbjct: 66 IGPLQTNKIKYIVPFVHLIQSVENMRQMAEIQKCAARIERRVSILLEIHIAQEEQKHGFS 125
Query: 139 PNQTKDFVILCRQKY----QLNVEGLMCIPP----------AMGNPKPHFYLLSEIAREC 184
++ +F + Y + + G+M I K F + I +
Sbjct: 126 QSELLEF--FGEKTYLQYPNIKICGIMTIATLTDDQKQISEEFARAKGIFESVKAIYPDS 183
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LS+GM+ D+ LAI G+T VRIGS IFG+R
Sbjct: 184 DFCQLSIGMSDDYRLAIEQGSTMVRIGSKIFGQR 217
>gi|169335055|ref|ZP_02862248.1| hypothetical protein ANASTE_01461 [Anaerofustis stercorihominis DSM
17244]
gi|169257793|gb|EDS71759.1| hypothetical protein ANASTE_01461 [Anaerofustis stercorihominis DSM
17244]
Length = 231
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 101/203 (49%), Gaps = 14/203 (6%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
++V L+AV+K +++I+ + G ENK++E K+ + + ++ FIG LQ N
Sbjct: 27 ENVKLLAVTKFRTNEEIKEVIDYGIKDLGENKVKEFLGKYEYFKGQ-NINWHFIGHLQRN 85
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV +IV +I +V + ++ + K+ + I+ N G E K G ++ ++
Sbjct: 86 KVKDIVGKVHLIHSVDSIRLMEEINKQSEKKDIITNILIEFNIGKEENKYGFDESEVEEA 145
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEIARECK----------LTKLSMG 192
+ +NV G+MC+ P + F L +I C+ L+ +SMG
Sbjct: 146 FNKSIEFKNINVMGVMCMAPFTKDKDVLVNVFRKLRKIYDNCRNMYNKCDNINLSVISMG 205
Query: 193 MTRDFELAIASGATSVRIGSGIF 215
M+ D+++AI G+ VRIG+ IF
Sbjct: 206 MSNDYQVAIDEGSNIVRIGTSIF 228
>gi|30021989|ref|NP_833620.1| putative cytoplasmic protein [Bacillus cereus ATCC 14579]
gi|218235156|ref|YP_002368700.1| conserved hypothetical protein TIGR00044 [Bacillus cereus B4264]
gi|218899054|ref|YP_002447465.1| hypothetical protein BCG9842_B1240 [Bacillus cereus G9842]
gi|296504394|ref|YP_003666094.1| hypothetical protein BMB171_C3564 [Bacillus thuringiensis BMB171]
gi|29897545|gb|AAP10821.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579]
gi|218163113|gb|ACK63105.1| conserved hypothetical protein TIGR00044 [Bacillus cereus B4264]
gi|218542197|gb|ACK94591.1| conserved hypothetical protein TIGR00044 [Bacillus cereus G9842]
gi|296325446|gb|ADH08374.1| putative cytoplasmic protein [Bacillus thuringiensis BMB171]
Length = 224
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 108/230 (46%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQENLVIVNEAIKESCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
+K+ + V FIGSLQ+ KV EI++ D + ++ R LSL Q R
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDR------LSLAKEIQKRAD 112
Query: 120 --LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP----- 172
+ +IQV T E K G+ + F+ ++ ++ V GLM + P +
Sbjct: 113 KKVKCFIQVKTSSEESKQGLAIEEVVSFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCF 172
Query: 173 -HFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+L +E +L +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 173 KELRMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVG 222
>gi|257452084|ref|ZP_05617383.1| proline synthetase associated protein [Fusobacterium sp. 3_1_5R]
gi|317058633|ref|ZP_07923118.1| proline synthetase associated protein [Fusobacterium sp. 3_1_5R]
gi|313684309|gb|EFS21144.1| proline synthetase associated protein [Fusobacterium sp. 3_1_5R]
Length = 226
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 105/208 (50%), Gaps = 23/208 (11%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW-----IPLRK--EWDVQLRF 78
+ V ++AVSK + ++++ L G + EN++Q ++K+ P K EW F
Sbjct: 23 EKVKVIAVSKYLTAQEMLPYLETGIITLGENRVQVIQEKYEELSTYPFAKSLEW----HF 78
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI- 137
IG+LQ NKV I +I +V++ A ++ +M + +PV I+VN E K G
Sbjct: 79 IGNLQKNKVKYIADKVSMIHSVNKLSLAEEINKKMEALGKKMPVLIEVNVSGEESKEGYE 138
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIARECK-------LT 187
+ KD L K +++ GLM + P + + F+ L + + LT
Sbjct: 139 VLEAEKDLPKLLNLK-NISICGLMTMAPFTEDIEEQRRVFHKLRTLKEDWNEKYFQGSLT 197
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIF 215
+LSMGM+ D+++A+ GAT +R+G IF
Sbjct: 198 ELSMGMSNDYKIALQEGATMIRLGRKIF 225
>gi|222619875|gb|EEE56007.1| hypothetical protein OsJ_04770 [Oryza sativa Japonica Group]
Length = 244
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 93/194 (47%), Gaps = 22/194 (11%)
Query: 42 IRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL---FDVIE 98
+R G F EN +QE K L + D++ FIG LQSNKV +++ ++E
Sbjct: 49 VRELYDAGHRCFGENYVQEFVTKAPQLPE--DIRWHFIGHLQSNKVKSLLAAVPNLHMVE 106
Query: 99 TVSREKTASLLSLEMIKQSRF-LPVYIQVNTGYEIQKSGIMPNQ----TKDFVILCRQKY 153
V K A+ L + R L V +QVNT E KSGI P++ K + C
Sbjct: 107 GVDNVKIANHLDRAVSSLGRDPLKVLVQVNTSGEESKSGIDPSRCVELAKHVKLACPH-- 164
Query: 154 QLNVEGLMCIPPAMGNPKP-HFYLLSEIARE-CKLT-------KLSMGMTRDFELAIASG 204
L GLM I + P +F L E CK +LSMGM+ DFE AI G
Sbjct: 165 -LIFSGLMTIGMKDYSSTPENFKALVNCKLEVCKAIDMPAEQFELSMGMSGDFEQAIEMG 223
Query: 205 ATSVRIGSGIFGER 218
+TSVRIGS IFG R
Sbjct: 224 STSVRIGSTIFGPR 237
>gi|218189740|gb|EEC72167.1| hypothetical protein OsI_05211 [Oryza sativa Indica Group]
Length = 244
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 93/194 (47%), Gaps = 22/194 (11%)
Query: 42 IRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL---FDVIE 98
+R G F EN +QE K L + D++ FIG LQSNKV +++ ++E
Sbjct: 49 VRELYDAGHRCFGENYVQEFVTKAPQLPE--DIRWHFIGHLQSNKVKSLLAAVPNLHMVE 106
Query: 99 TVSREKTASLLSLEMIKQSRF-LPVYIQVNTGYEIQKSGIMPNQ----TKDFVILCRQKY 153
V K A+ L + R L V +QVNT E KSGI P++ K + C
Sbjct: 107 GVDNVKIANHLDRAVSSLGRDPLKVLVQVNTSGEESKSGIDPSRCVELAKHVKLACPH-- 164
Query: 154 QLNVEGLMCIPPAMGNPKP-HFYLLSEIARE-CKLT-------KLSMGMTRDFELAIASG 204
L GLM I + P +F L E CK +LSMGM+ DFE AI G
Sbjct: 165 -LIFSGLMTIGMKDYSSTPENFKALVNCKLEVCKAIDMPAEQFELSMGMSGDFEQAIEMG 223
Query: 205 ATSVRIGSGIFGER 218
+TSVRIGS IFG R
Sbjct: 224 STSVRIGSTIFGPR 237
>gi|326803768|ref|YP_004321586.1| pyridoxal phosphate enzyme, YggS family [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651070|gb|AEA01253.1| pyridoxal phosphate enzyme, YggS family [Aerococcus urinae
ACS-120-V-Col10a]
Length = 222
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 20/205 (9%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQ 83
+ V+L+ VSK ++ CG FAEN +Q AKK +P DV IG LQ
Sbjct: 25 NKVTLICVSKYHSPEEAMAVYHCGIRHFAENYVQGLLAKKAAMPD----DVIWHLIGPLQ 80
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
S KV E+++ D + R K A + K+ + +++VN E K G+ +T
Sbjct: 81 SRKVKEVINEIDYYHALDRIKIAKEIDKRAAKE---IKCFVEVNISGETSKHGLTKEETL 137
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR-----------ECKLTKLSMG 192
F+ + ++ V GLM + P+ + + ++A T+LSMG
Sbjct: 138 PFIKQLAEFKKIKVVGLMTMAPSAASDSEVQEIFRQLASLRDQVADQQWMHAPCTELSMG 197
Query: 193 MTRDFELAIASGATSVRIGSGIFGE 217
M++D+ LAI A+ +R+G+ F +
Sbjct: 198 MSQDYPLAIKERASFIRVGAAFFKD 222
>gi|45187572|ref|NP_983795.1| ADL301Cp [Ashbya gossypii ATCC 10895]
gi|44982310|gb|AAS51619.1| ADL301Cp [Ashbya gossypii ATCC 10895]
Length = 268
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 111/236 (47%), Gaps = 29/236 (12%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQEAKKKWIP 67
V +++ S R + V L+AVSK+ + + + G F EN +QE K
Sbjct: 38 VVDERVSRSMEECGRRRSEVLLLAVSKLKPASDVAILYEEMGLRHFGENYVQELVGKAAE 97
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRFLP---- 121
L D+Q FIG+LQSNK ++ + ++ +ET+ K A L +++F P
Sbjct: 98 LPG--DIQWHFIGALQSNKCKDLAKVVNLHAVETIDSLKKARKLEE---ARAKFQPDAPA 152
Query: 122 --VYIQVNTGYEIQKSGIMPN----QTKDFVILCRQKYQLNVEGLMCI-----PPAMGNP 170
I+VNT E QK+G+ + +F L + + GLM I A
Sbjct: 153 ILCSIEVNTSGEAQKAGVSDEAELCELVEF-FLSEDAKHVRLRGLMTIGSWDASHAADGE 211
Query: 171 KPHFYLLSEIAR--ECKLT---KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
P F L++ R + K +LSMGM+ DF A+ G++ VRIG+ IFG RP +
Sbjct: 212 NPEFAALAKWKRVLDGKYGLNLELSMGMSADFAAAMRQGSSEVRIGTDIFGARPAR 267
>gi|15924178|ref|NP_371712.1| hypothetical protein SAV1188 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15926771|ref|NP_374304.1| hypothetical protein SA1031 [Staphylococcus aureus subsp. aureus
N315]
gi|49483351|ref|YP_040575.1| hypothetical protein SAR1164 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|57651758|ref|YP_186064.1| hypothetical protein SACOL1201 [Staphylococcus aureus subsp. aureus
COL]
gi|151221310|ref|YP_001332132.1| hypothetical protein NWMN_1098 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156979509|ref|YP_001441768.1| hypothetical protein SAHV_1178 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509362|ref|YP_001575021.1| hypothetical protein USA300HOU_1125 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221140640|ref|ZP_03565133.1| hypothetical protein SauraJ_03256 [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253314958|ref|ZP_04838171.1| hypothetical protein SauraC_02035 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|255005975|ref|ZP_05144576.2| hypothetical protein SauraM_05880 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257425242|ref|ZP_05601667.1| YlmE protein [Staphylococcus aureus subsp. aureus 55/2053]
gi|257427902|ref|ZP_05604300.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430535|ref|ZP_05606917.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257433296|ref|ZP_05609654.1| YlmE protein [Staphylococcus aureus subsp. aureus E1410]
gi|257436138|ref|ZP_05612185.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus M876]
gi|257795756|ref|ZP_05644735.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9781]
gi|258415980|ref|ZP_05682250.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|258419727|ref|ZP_05682694.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9719]
gi|258438769|ref|ZP_05689922.1| YlmE protein [Staphylococcus aureus A9299]
gi|258444525|ref|ZP_05692854.1| YlmE protein [Staphylococcus aureus A8115]
gi|258447642|ref|ZP_05695786.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A6300]
gi|258449484|ref|ZP_05697587.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A6224]
gi|258451886|ref|ZP_05699907.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A5948]
gi|258454863|ref|ZP_05702827.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A5937]
gi|262048761|ref|ZP_06021643.1| hypothetical protein SAD30_1591 [Staphylococcus aureus D30]
gi|262051688|ref|ZP_06023907.1| hypothetical protein SA930_1515 [Staphylococcus aureus 930918-3]
gi|269202803|ref|YP_003282072.1| hypothetical protein SAAV_1159 [Staphylococcus aureus subsp. aureus
ED98]
gi|282892674|ref|ZP_06300909.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A8117]
gi|282903740|ref|ZP_06311628.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus C160]
gi|282905504|ref|ZP_06313359.1| pyridoxal phosphate enzyme YggS family protein [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282908480|ref|ZP_06316310.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282910761|ref|ZP_06318564.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282913964|ref|ZP_06321751.1| YlmE protein [Staphylococcus aureus subsp. aureus M899]
gi|282916438|ref|ZP_06324200.1| pyridoxal phosphate enzyme [Staphylococcus aureus subsp. aureus
D139]
gi|282918886|ref|ZP_06326621.1| pyridoxal phosphate enzyme [Staphylococcus aureus subsp. aureus
C427]
gi|282919969|ref|ZP_06327698.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9765]
gi|282924009|ref|ZP_06331685.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus C101]
gi|282929233|ref|ZP_06336808.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A10102]
gi|283770250|ref|ZP_06343142.1| YlmE [Staphylococcus aureus subsp. aureus H19]
gi|283957931|ref|ZP_06375382.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus A017934/97]
gi|284024112|ref|ZP_06378510.1| hypothetical protein Saura13_05954 [Staphylococcus aureus subsp.
aureus 132]
gi|293500997|ref|ZP_06666848.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus 58-424]
gi|293509955|ref|ZP_06668664.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus M809]
gi|293526544|ref|ZP_06671229.1| YlmE protein [Staphylococcus aureus subsp. aureus M1015]
gi|295427674|ref|ZP_06820306.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|296276136|ref|ZP_06858643.1| hypothetical protein SauraMR_07292 [Staphylococcus aureus subsp.
aureus MR1]
gi|297591368|ref|ZP_06950006.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus MN8]
gi|304381252|ref|ZP_07363905.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|4009493|gb|AAC95460.1| YlmE [Staphylococcus aureus]
gi|13700987|dbj|BAB42283.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14246958|dbj|BAB57350.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|49241480|emb|CAG40166.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|57285944|gb|AAW38038.1| conserved hypothetical protein TIGR00044 [Staphylococcus aureus
subsp. aureus COL]
gi|150374110|dbj|BAF67370.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156721644|dbj|BAF78061.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|160368171|gb|ABX29142.1| hypothetical protein USA300HOU_1125 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|257271699|gb|EEV03837.1| YlmE protein [Staphylococcus aureus subsp. aureus 55/2053]
gi|257274743|gb|EEV06230.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278663|gb|EEV09282.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257281389|gb|EEV11526.1| YlmE protein [Staphylococcus aureus subsp. aureus E1410]
gi|257284420|gb|EEV14540.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus M876]
gi|257789728|gb|EEV28068.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9781]
gi|257839316|gb|EEV63790.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|257844312|gb|EEV68694.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9719]
gi|257848028|gb|EEV72021.1| YlmE protein [Staphylococcus aureus A9299]
gi|257850018|gb|EEV73971.1| YlmE protein [Staphylococcus aureus A8115]
gi|257853833|gb|EEV76792.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A6300]
gi|257857472|gb|EEV80370.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A6224]
gi|257860494|gb|EEV83321.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A5948]
gi|257863246|gb|EEV86010.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A5937]
gi|259160423|gb|EEW45448.1| hypothetical protein SA930_1515 [Staphylococcus aureus 930918-3]
gi|259163217|gb|EEW47777.1| hypothetical protein SAD30_1591 [Staphylococcus aureus D30]
gi|262075093|gb|ACY11066.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ED98]
gi|269940682|emb|CBI49061.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282313981|gb|EFB44373.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus C101]
gi|282316696|gb|EFB47070.1| pyridoxal phosphate enzyme [Staphylococcus aureus subsp. aureus
C427]
gi|282319878|gb|EFB50226.1| pyridoxal phosphate enzyme [Staphylococcus aureus subsp. aureus
D139]
gi|282322032|gb|EFB52356.1| YlmE protein [Staphylococcus aureus subsp. aureus M899]
gi|282325366|gb|EFB55675.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282327542|gb|EFB57825.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282330796|gb|EFB60310.1| pyridoxal phosphate enzyme YggS family protein [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282589192|gb|EFB94289.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A10102]
gi|282594685|gb|EFB99669.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9765]
gi|282595358|gb|EFC00322.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus C160]
gi|282764671|gb|EFC04796.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A8117]
gi|283460397|gb|EFC07487.1| YlmE [Staphylococcus aureus subsp. aureus H19]
gi|283790080|gb|EFC28897.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus A017934/97]
gi|285816870|gb|ADC37357.1| protein of unknown function [Staphylococcus aureus 04-02981]
gi|290920616|gb|EFD97679.1| YlmE protein [Staphylococcus aureus subsp. aureus M1015]
gi|291096002|gb|EFE26263.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus 58-424]
gi|291467405|gb|EFF09922.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus M809]
gi|295128032|gb|EFG57666.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|297576254|gb|EFH94970.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus MN8]
gi|302332793|gb|ADL22986.1| alanine racemase [Staphylococcus aureus subsp. aureus JKD6159]
gi|302751011|gb|ADL65188.1| alanine racemase [Staphylococcus aureus subsp. aureus str. JKD6008]
gi|304340235|gb|EFM06176.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|312438435|gb|ADQ77506.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus TCH60]
gi|312829582|emb|CBX34424.1| alanine racemase, N-terminal domain protein [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|315130979|gb|EFT86963.1| hypothetical protein CGSSa03_05529 [Staphylococcus aureus subsp.
aureus CGS03]
gi|315196918|gb|EFU27261.1| hypothetical protein CGSSa01_04090 [Staphylococcus aureus subsp.
aureus CGS01]
gi|329725028|gb|EGG61524.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus 21189]
gi|329727366|gb|EGG63822.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus 21172]
Length = 224
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 104/209 (49%), Gaps = 34/209 (16%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNK 86
+++AV+K V ++ + A G F EN+L+ KK+ +P D + FIGSLQS K
Sbjct: 28 NVIAVTKYVTIERAKEAYEAGIRHFGENRLEGFFQKKEALP----SDAVIHFIGSLQSRK 83
Query: 87 VSEIVSLFDVIETVSREKTASLLSL--EMIKQSRF-LPVYIQVNTGYEIQKSGIMPNQTK 143
V ++++ D + R LSL E+ K++ + ++QVN E K GI
Sbjct: 84 VKDVINDVDYFHALDR------LSLAKEINKRAEHKIKCFLQVNVSGEASKHGIALEDVD 137
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK--------------- 188
F+ ++ ++ + GLM + P + Y+ S + ++ +L K
Sbjct: 138 QFIDDLKKYDKIEIVGLMTMAPLTDDEA---YIRS-LFKQLRLKKEEIQRLNLEYAPCDE 193
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGE 217
LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 194 LSMGMSNDYLIAVEEGATFVRIGTKLVGE 222
>gi|301055391|ref|YP_003793602.1| hypothetical protein BACI_c38560 [Bacillus anthracis CI]
gi|300377560|gb|ADK06464.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
str. CI]
Length = 224
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 109/232 (46%), Gaps = 26/232 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQTNLTNVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF- 119
+K+ + V FIGSLQ+ KV EI++ D + ++ R LSL Q R
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDR------LSLAKEIQKRAN 112
Query: 120 --LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
+ +IQV T E K G+ +T F+ ++ ++ V GLM + P + F
Sbjct: 113 KKVKCFIQVKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCF 172
Query: 175 YLLSEIARE----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L + +E CK +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 173 KELRMLQKEVQGLELLHAPCK--ELSMGMSNDYTIAIEEGATYIRLGTILVG 222
>gi|258423768|ref|ZP_05686654.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9635]
gi|257846000|gb|EEV70028.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9635]
Length = 224
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 104/209 (49%), Gaps = 34/209 (16%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNK 86
+++AV+K V ++ + A G F EN+L+ KK+ +P D + FIGSLQS K
Sbjct: 28 NVIAVTKYVTIERAKEAYEAGIRHFGENRLEGFFQKKEALP----SDAVIHFIGSLQSRK 83
Query: 87 VSEIVSLFDVIETVSREKTASLLSL--EMIKQSRF-LPVYIQVNTGYEIQKSGIMPNQTK 143
V ++++ D + R LSL E+ K++ + ++QVN E K GI
Sbjct: 84 VKDVINDVDYFHALDR------LSLAKEINKRAEHKIKCFLQVNVSGEASKHGIALEDVD 137
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK--------------- 188
F+ ++ ++ + GLM + P + Y+ S + ++ +L K
Sbjct: 138 QFIDDLKKYDKIEIVGLMTMAPLTDDEA---YIRS-LFKQLRLKKEEIQRLNLEYAPCDE 193
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGE 217
LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 194 LSMGMSNDYLIAVEEGATFVRIGTKLVGE 222
>gi|227488535|ref|ZP_03918851.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51867]
gi|227091429|gb|EEI26741.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51867]
Length = 233
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ +Q+I + A R D V L+ V+K + + + S G EN+ QEAKKK
Sbjct: 11 LQRVRQRIAEAKAAAGR-TDEVRLLPVTKFHPASDVEILHSLGIEAVGENRDQEAKKKAA 69
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM-------IKQSRF 119
+ +G +Q+ K + + +++V L M + +
Sbjct: 70 EFPS---MAFHMLGQIQTKKANSVARWASAVQSVDSLTLVQALDRGMQLALDRGDRTTET 126
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L VY+Q++ + + G++ V L + GLMC+PP + F +
Sbjct: 127 LDVYVQLSLDGDESRGGVIAADVPFLVEAIEGSTHLRLVGLMCVPPVASDADEAFATALD 186
Query: 180 I-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ AR + S GM+ D E+AI +G+T VR+G+ I G R
Sbjct: 187 VKQDLDARAGHPLEFSAGMSADLEVAIKNGSTLVRVGTDILGPR 230
>gi|87160902|ref|YP_493779.1| hypothetical protein SAUSA300_1082 [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88194894|ref|YP_499694.1| hypothetical protein SAOUHSC_01153 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148267680|ref|YP_001246623.1| alanine racemase domain-containing protein [Staphylococcus aureus
subsp. aureus JH9]
gi|150393738|ref|YP_001316413.1| alanine racemase domain-containing protein [Staphylococcus aureus
subsp. aureus JH1]
gi|253731807|ref|ZP_04865972.1| hypothetical protein HMPREF0776_2189 [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|294848181|ref|ZP_06788928.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9754]
gi|295407126|ref|ZP_06816927.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A8819]
gi|297245988|ref|ZP_06929847.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A8796]
gi|87126876|gb|ABD21390.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202452|gb|ABD30262.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147740749|gb|ABQ49047.1| alanine racemase domain protein [Staphylococcus aureus subsp.
aureus JH9]
gi|149946190|gb|ABR52126.1| alanine racemase domain protein [Staphylococcus aureus subsp.
aureus JH1]
gi|253724457|gb|EES93186.1| hypothetical protein HMPREF0776_2189 [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|294824981|gb|EFG41403.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9754]
gi|294967979|gb|EFG44007.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A8819]
gi|297177152|gb|EFH36406.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A8796]
gi|320140997|gb|EFW32844.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320143053|gb|EFW34843.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus MRSA177]
Length = 222
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 104/209 (49%), Gaps = 34/209 (16%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNK 86
+++AV+K V ++ + A G F EN+L+ KK+ +P D + FIGSLQS K
Sbjct: 26 NVIAVTKYVTIERAKEAYEAGIRHFGENRLEGFFQKKEALP----SDAVIHFIGSLQSRK 81
Query: 87 VSEIVSLFDVIETVSREKTASLLSL--EMIKQSRF-LPVYIQVNTGYEIQKSGIMPNQTK 143
V ++++ D + R LSL E+ K++ + ++QVN E K GI
Sbjct: 82 VKDVINDVDYFHALDR------LSLAKEINKRAEHKIKCFLQVNVSGEASKHGIALEDVD 135
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK--------------- 188
F+ ++ ++ + GLM + P + Y+ S + ++ +L K
Sbjct: 136 QFIDDLKKYDKIEIVGLMTMAPLTDDEA---YIRS-LFKQLRLKKEEIQRLNLEYAPCDE 191
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGE 217
LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 192 LSMGMSNDYLIAVEEGATFVRIGTKLVGE 220
>gi|227543139|ref|ZP_03973188.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51866]
gi|227181127|gb|EEI62099.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51866]
Length = 233
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 97/224 (43%), Gaps = 16/224 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ +Q+I + A R D V L+ V+K + + + S G EN+ QEAKKK
Sbjct: 11 LQRVRQRIAEAKAAAGR-TDEVCLLPVTKFHPASDVEILHSLGIEAVGENRDQEAKKKAA 69
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM-------IKQSRF 119
+ +G +Q+ K + + +++V L M + +
Sbjct: 70 EFPS---MAFHMLGQIQTKKANSVARWASAVQSVDSLTLVQALDRGMQLALDRGDRTTET 126
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L VY+Q++ + + G++ V L + GLMC+PP + F +
Sbjct: 127 LDVYVQLSLDGDESRGGVIAADVPFLVEAIEGSTHLRLVGLMCVPPVASDADEAFATALD 186
Query: 180 I-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ AR + S GM+ D E+AI +G+T VR+G+ I G R
Sbjct: 187 VKQDLDARAGHPLEFSAGMSADLEVAIKNGSTLVRVGTDILGPR 230
>gi|319939624|ref|ZP_08013983.1| YggS family pyridoxal phosphate enzyme [Streptococcus anginosus
1_2_62CV]
gi|319811213|gb|EFW07519.1| YggS family pyridoxal phosphate enzyme [Streptococcus anginosus
1_2_62CV]
Length = 223
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 95/206 (46%), Gaps = 15/206 (7%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R K+SV ++AV+K VDS + + G EN++ + +K+ L+ E V IG
Sbjct: 21 ANRSKNSVEVIAVTKYVDSSTAKELVKAGIHHIGENRVDKFLEKYQALKDER-VTWHLIG 79
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+LQ KV ++++ D + K A ++ + + ++QVN E K G
Sbjct: 80 TLQRRKVKDVINYVDYFHALDSVKLAQEINK---RAEHIIKCFLQVNISKEASKHGFAIE 136
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK-----------LTKL 189
+ + + + + GLM + P + + + + + T L
Sbjct: 137 EIDTILPELEKLENIQIVGLMTMAPIEADEAELNVIFQQAYQLQQRLQRKQLPNMPFTDL 196
Query: 190 SMGMTRDFELAIASGATSVRIGSGIF 215
SMGM+ D+ +AIA+G+T VRIG+ F
Sbjct: 197 SMGMSHDYAIAIANGSTFVRIGTAFF 222
>gi|210634169|ref|ZP_03298031.1| hypothetical protein COLSTE_01953 [Collinsella stercoris DSM 13279]
gi|210158916|gb|EEA89887.1| hypothetical protein COLSTE_01953 [Collinsella stercoris DSM 13279]
Length = 254
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 109/223 (48%), Gaps = 23/223 (10%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+++ + + R ++ +LVAVSK V ++ A+ G +F EN+ QE +K L
Sbjct: 28 RMDAALTASGRAREDATLVAVSKTVRVDEVVTAIDAGYRVFGENRPQELNRKLEGLSLRP 87
Query: 73 DVQ-LRF--IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL--------- 120
DV +RF IG+LQ+NK++ ++ +++ ++ + L + R+L
Sbjct: 88 DVPPVRFDMIGNLQTNKINAVLGRVELVHSIG---SLHLARALAARAERWLEAGELVAPQ 144
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF------ 174
+ I+VN E K G P++ + + + +EGLM + P +
Sbjct: 145 SILIEVNVSGEETKGGFAPSELRAAFGELQSLCGVRIEGLMTMAPRGDKDRARACFSGLR 204
Query: 175 YLLSEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIF 215
L E++RE L +LS GM+ DFE+A+ G+T VR+G +F
Sbjct: 205 ELRDELSRESGLPLRELSCGMSEDFEVALEEGSTIVRLGRVVF 247
>gi|86605564|ref|YP_474327.1| hypothetical protein CYA_0860 [Synechococcus sp. JA-3-3Ab]
gi|86554106|gb|ABC99064.1| conserved hypothetical protein TIGR00044 [Synechococcus sp.
JA-3-3Ab]
Length = 224
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 110/222 (49%), Gaps = 16/222 (7%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67
Q+ +I+ AI A+ P + V ++AVSK IR A G F E+++QEA K
Sbjct: 3 QLIHSRIQ--AIRAQIP-EHVEIMAVSKGYSVNHIRAAYRAGIRHFGESRVQEAAAKQAQ 59
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
L+ D+ IG LQ+NKV + F I++V + A L++ + + + +QV
Sbjct: 60 LQDLTDIVWHLIGHLQTNKVKPALRQFAWIDSVDSLRLAKLINQKAWELHLTPKLCLQVK 119
Query: 128 TGYEIQKSG-IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL---LSEIA-- 181
+ K G ++P+ + L Q Q+ + GLM I P + + L L+E+A
Sbjct: 120 LAPDPHKFGWLIPDLLQSLPQL-NQLLQVQIVGLMTILPLGLSSEAALELFRKLAELADH 178
Query: 182 ------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+L LSMGM+ D+ LA+A+G+ +R+G +F +
Sbjct: 179 IQRSGYEHLQLHTLSMGMSDDYPLAVAAGSNLIRLGRALFAD 220
>gi|257466117|ref|ZP_05630428.1| proline synthetase associated protein [Fusobacterium gonidiaformans
ATCC 25563]
gi|315917274|ref|ZP_07913514.1| proline synthetase associated protein [Fusobacterium gonidiaformans
ATCC 25563]
gi|313691149|gb|EFS27984.1| proline synthetase associated protein [Fusobacterium gonidiaformans
ATCC 25563]
Length = 226
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 105/208 (50%), Gaps = 23/208 (11%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW-----IPLRK--EWDVQLRF 78
+ V ++AVSK + ++++ L G + EN++Q ++K+ P K EW F
Sbjct: 23 EKVKVIAVSKYLTAQEMLPYLETGIITLGENRVQVIQEKYEELSTYPFAKSLEW----HF 78
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI- 137
IG+LQ NKV IV +I +V++ A ++ +M + +PV I+VN E K G
Sbjct: 79 IGNLQKNKVKYIVDKVSMIHSVNKLSLAEEINKKMEALGKKMPVLIEVNVSGEESKEGYE 138
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIARECK-------LT 187
+ KD L K +++ GLM + P + + F L + + LT
Sbjct: 139 VLEAEKDLPKLLNLK-NISICGLMTMAPFTEDIEEQRRVFQKLRTLKEDWNEKYFQGSLT 197
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIF 215
+LSMGM+ D+++A+ GAT +R+G IF
Sbjct: 198 ELSMGMSNDYKIALQEGATMIRLGRKIF 225
>gi|325279347|ref|YP_004251889.1| hypothetical protein Odosp_0626 [Odoribacter splanchnicus DSM
20712]
gi|324311156|gb|ADY31709.1| protein of unknown function UPF0001 [Odoribacter splanchnicus DSM
20712]
Length = 227
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 99/222 (44%), Gaps = 24/222 (10%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
EN + K + V L+AVSK + I A + GQ F EN+ QE K+ L K D+
Sbjct: 7 ENIEEIVKTLPEGVRLIAVSKTKPVEYIEEAYAGGQRAFGENRPQEMAAKYRQLPK--DI 64
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
+ IG LQ V I S +I +V K + E +K R + ++ + E K
Sbjct: 65 EWHMIGQLQEKNVKYIASFVKLIHSVDSLKLLQKIDREALKNERMIDCLLEFHIAEEETK 124
Query: 135 SGIMPNQ------TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR------ 182
SG+ + + +F +L + + G+M I + + E+ R
Sbjct: 125 SGLNWEEACRLLESDEFKVL----EHIRIVGVMGIATYTEDREQIRKEFRELHRIFGLLK 180
Query: 183 ------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E +LSMGM+ D+ +A+ G+T VR+GS +FG R
Sbjct: 181 ATYFQEEESFKELSMGMSGDYPIAVEEGSTMVRVGSAVFGAR 222
>gi|6319435|ref|NP_009517.1| hypothetical protein YBL036C [Saccharomyces cerevisiae S288c]
gi|586419|sp|P38197|YBD6_YEAST RecName: Full=UPF0001 protein YBL036C
gi|157830174|pdb|1B54|A Chain A, Crystal Structure Of A Yeast Hypothetical Protein-A
Structure From Bnl's Human Proteome Project
gi|463272|emb|CAA55058.1| YBL0413 [Saccharomyces cerevisiae]
gi|536047|emb|CAA84856.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285810298|tpg|DAA07083.1| TPA: hypothetical protein YBL036C [Saccharomyces cerevisiae S288c]
Length = 257
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 106/212 (50%), Gaps = 28/212 (13%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNKV 87
L+ VSK+ + I++ G F EN +QE K K +P D++ FIG LQ+NK
Sbjct: 44 LLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPD----DIKWHFIGGLQTNKC 99
Query: 88 SEIVSLFDV--IETVSREKTASLLSLEMIK-QSRFLPVY--IQVNTGYEIQKSGIMPNQT 142
++ + ++ +ET+ K A L+ K Q P+ +Q+NT +E QKSG + N+
Sbjct: 100 KDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSG-LNNEA 158
Query: 143 K-----DFVILCRQKYQLNVEGLMCIPP---AMGNPKPH--FYLLSEIARECKLT----- 187
+ DF + KY + + GLM I + + K + F L E ++
Sbjct: 159 EIFEVIDFFLSEECKY-IKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTSL 217
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
KLSMGM+ DF AI G VRIG+ IFG RP
Sbjct: 218 KLSMGMSADFREAIRQGTAEVRIGTDIFGARP 249
>gi|300780837|ref|ZP_07090691.1| YggS family pyridoxal phosphate enzyme [Corynebacterium genitalium
ATCC 33030]
gi|300532544|gb|EFK53605.1| YggS family pyridoxal phosphate enzyme [Corynebacterium genitalium
ATCC 33030]
Length = 235
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 106/229 (46%), Gaps = 15/229 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ ++ + + A R SV+++ V+K + + + G EN+ QEAK
Sbjct: 8 LAANLEGLRKDVRAAERSAGREDGSVAILPVTKFHPASDVALLAELGIATVGENREQEAK 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEI------VSLFDVIETVSREKTASLLSLEM-IK 115
+K L +++ IG +Q+ K + + V D ++ + L+LE +
Sbjct: 68 QKAAEL---PNMRFAMIGQIQTKKANSVARWASEVHSLDSVKLARALDSGVALALERGDR 124
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
S LP IQ++ + + G+ + + V Q + V+G M +PP +P F
Sbjct: 125 TSDQLPCLIQLSFDEDENRGGVRESDLAELVAEAEQLEHVLVDGFMVVPPIDADPARVFE 184
Query: 176 LLSEIARE--CKLTK---LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
IA + +L + LS GM+ DFE AI G+ VR+G+ + G+RP
Sbjct: 185 ASRSIADDYAGRLGRPMLLSAGMSHDFEQAITCGSDIVRVGTRLLGQRP 233
>gi|255325339|ref|ZP_05366445.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium
tuberculostearicum SK141]
gi|255297904|gb|EET77215.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium
tuberculostearicum SK141]
Length = 232
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 93/207 (44%), Gaps = 24/207 (11%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF--IGSLQSNKV 87
L+ V+K + I + G AEN+ QEA+ K L QLRF IG +Q+ K
Sbjct: 33 LLPVTKFHPAADIALLAELGVTDVAENREQEARAKATEL-----PQLRFHMIGQIQTKKA 87
Query: 88 SEIVSLFDVIETVSREKTASLL------SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
+ + + ++ K A L + E ++ LPV+IQV+ + + G+ P
Sbjct: 88 NHVARWAASVHSLDSLKLAHALERGVSLAKERGERESNLPVFIQVSADGDGARGGVSPEA 147
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY--------LLSEIARECKLTKLSMGM 193
+ V + L + GLM +PP + F L SE+ R K S GM
Sbjct: 148 LDELVRAVEEAQHLELAGLMVVPPLDADAGEVFRNVRGEVDRLSSELNRPLKF---SAGM 204
Query: 194 TRDFELAIASGATSVRIGSGIFGERPC 220
+ D AIA+G+ VR+G+ I G RP
Sbjct: 205 SADMAEAIAAGSDIVRVGTSIMGPRPV 231
>gi|298694479|gb|ADI97701.1| hypothetical protein SAOV_1189 [Staphylococcus aureus subsp. aureus
ED133]
gi|323440960|gb|EGA98667.1| hypothetical protein SAO11_0027 [Staphylococcus aureus O11]
gi|323442277|gb|EGA99907.1| hypothetical protein SAO46_1759 [Staphylococcus aureus O46]
Length = 224
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 104/209 (49%), Gaps = 34/209 (16%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNK 86
+++AV+K V ++ + A G F EN+L+ KK+ +P D + FIGSLQS K
Sbjct: 28 NVIAVTKYVTIERAKEAYEAGIRHFGENRLEGFFQKKEALP----SDAVIHFIGSLQSRK 83
Query: 87 VSEIVSLFDVIETVSREKTASLLSL--EMIKQSRF-LPVYIQVNTGYEIQKSGIMPNQTK 143
V ++++ D + R LSL E+ K++ + ++QVN E K GI
Sbjct: 84 VKDVINDVDYFHALDR------LSLAKEINKRAEHKIKCFLQVNVSGEASKHGIALEDVD 137
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK--------------- 188
F+ ++ ++ + GLM + P + Y+ S + ++ +L K
Sbjct: 138 QFIGDLKKYDKIEIVGLMTMAPLTDDEA---YIRS-LFKQLRLKKEEIQRLNLEYAPCDE 193
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGE 217
LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 194 LSMGMSNDYLIAVEEGATFVRIGTKLVGE 222
>gi|51013199|gb|AAT92893.1| YBL036C [Saccharomyces cerevisiae]
Length = 257
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 106/212 (50%), Gaps = 28/212 (13%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNKV 87
L+ VSK+ + I++ G F EN +QE K K +P D++ FIG LQ+NK
Sbjct: 44 LLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPD----DIKWHFIGGLQTNKC 99
Query: 88 SEIVSLFDV--IETVSREKTASLLSLEMIK-QSRFLPVY--IQVNTGYEIQKSGIMPNQT 142
++ + ++ +ET+ K A L+ K Q P+ +Q+NT +E QKSG + N+
Sbjct: 100 KDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSG-LNNEA 158
Query: 143 K-----DFVILCRQKYQLNVEGLMCIPP---AMGNPKPH--FYLLSEIARECKLT----- 187
+ DF + KY + + GLM I + + K + F L E ++
Sbjct: 159 EIFEVIDFFLSEECKY-IKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTSL 217
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
KLSMGM+ DF AI G VRIG+ IFG RP
Sbjct: 218 KLSMGMSADFREAIRQGTAEVRIGTDIFGARP 249
>gi|296818063|ref|XP_002849368.1| alanine racemase family protein [Arthroderma otae CBS 113480]
gi|238839821|gb|EEQ29483.1| alanine racemase family protein [Arthroderma otae CBS 113480]
Length = 280
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 107/238 (44%), Gaps = 60/238 (25%)
Query: 28 VSLVAVSKMVDSKKIRVALS--CGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQ 83
V LVAVSK+ + I S + F EN +QE K K +P W FIG LQ
Sbjct: 51 VRLVAVSKLKPASDILALHSPPTSHLHFGENYVQELLEKSKVLPPEIRW----HFIGGLQ 106
Query: 84 SNK----VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF------------------LP 121
SNK E+ L+ +E+V EK ASLL ++ F L
Sbjct: 107 SNKCVMLAREVRGLW-AVESVDTEKKASLLDKGWGERPEFKDKGTVDTDGTSEQEDRRLR 165
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCR----QKYQLNVEGLMCI-------PPAMGNP 170
V++QVNT E +++ V LCR Q +L ++GLM I N
Sbjct: 166 VFVQVNTSGE---------ESEPSVELCRFIREQCPRLKLQGLMTIGAIARSKATTPENE 216
Query: 171 KPHFYLLSEIAR--ECKLT-------KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L + E KL+ +LSMGM+ DFE AIA G++ VR+GS IFG RP
Sbjct: 217 NEDFACLRDTKDMVEEKLSLEGKDRLELSMGMSNDFEGAIAMGSSQVRVGSTIFGARP 274
>gi|323306047|gb|EGA59781.1| YBL036C-like protein [Saccharomyces cerevisiae FostersB]
Length = 231
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 106/212 (50%), Gaps = 28/212 (13%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNKV 87
L+ VSK+ + I++ G F EN +QE K K +P D++ FIG LQ+NK
Sbjct: 18 LLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPD----DIKWHFIGGLQTNKC 73
Query: 88 SEIVSLFDV--IETVSREKTASLLSLEMIK-QSRFLPVY--IQVNTGYEIQKSGIMPNQT 142
++ + ++ +ET+ K A L+ K Q P+ +Q+NT +E QKSG + N+
Sbjct: 74 KDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSG-LNNEA 132
Query: 143 K-----DFVILCRQKYQLNVEGLMCIPP---AMGNPKPH--FYLLSEIARECKLT----- 187
+ DF + KY + + GLM I + + K + F L E ++
Sbjct: 133 EIFEVIDFFLSEECKY-IKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTSL 191
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
KLSMGM+ DF AI G VRIG+ IFG RP
Sbjct: 192 KLSMGMSADFREAIRQGTAEVRIGTDIFGARP 223
>gi|309812660|ref|ZP_07706404.1| pyridoxal phosphate enzyme, YggS family [Dermacoccus sp. Ellin185]
gi|308433355|gb|EFP57243.1| pyridoxal phosphate enzyme, YggS family [Dermacoccus sp. Ellin185]
Length = 259
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 11/206 (5%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE-----WDVQLRFI 79
D+ +LV V+K + G EN+ QE +K LR E + FI
Sbjct: 51 DDAPTLVVVTKFFPVTDLVALADLGVGDVGENREQELVEKVDALRAERPDLIASPRRHFI 110
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ-KSGIM 138
G +QS K I DV++++ R K LL + L +++QV + + G
Sbjct: 111 GQIQSKKARRIARHADVVQSLDRLKLVPLLDAGAADRENPLDIFVQVALERDGSGRGGAQ 170
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE-----CKLTKLSMGM 193
+ + Q L + GLM + P P F L+ + ++ + T LS GM
Sbjct: 171 ETELHEVAAAVEQAPHLRLCGLMAVAPLGEEPAAAFSRLAHVRQDFLANFPQATSLSAGM 230
Query: 194 TRDFELAIASGATSVRIGSGIFGERP 219
+ D E A+ GAT +R+GS I G RP
Sbjct: 231 SGDLEDAVQIGATHLRVGSAILGSRP 256
>gi|16801203|ref|NP_471471.1| hypothetical protein lin2137 [Listeria innocua Clip11262]
gi|16414651|emb|CAC97367.1| lin2137 [Listeria innocua Clip11262]
Length = 229
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 108/232 (46%), Gaps = 23/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ L+ +I+ S + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLEKVTAQIKQSCEKSNRQQADVTLVAVTKTIDVAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRF 119
K L + D+ +IGSLQ+ KV +++ D + ++ R S L+ E+ K+ ++
Sbjct: 61 FLDKTRELAGKDDICWHYIGSLQTRKVKDVLPEIDYLHSLDR----SSLAKEIEKRATKP 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN---VEGLMCIPPAMGNPKPHFYL 176
+ ++QVN E K G + F+ Q+ N + GLM + P + K ++
Sbjct: 117 IKCFLQVNISGEESKHGFSKEEALSFL----QEADFNFIEIIGLMTMAPITNSDKELHHV 172
Query: 177 LSEIA-----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E+ + T+LSMGMT D+ +AI GAT +R+G + +
Sbjct: 173 FHELKQLQQEIHALQLKNVPCTELSMGMTNDYGIAITEGATFIRVGRALVSD 224
>gi|281492481|ref|YP_003354461.1| pyridoxal-5'-phosphate family protein [Lactococcus lactis subsp.
lactis KF147]
gi|281376145|gb|ADA65636.1| Pyridoxal-5'-phosphate family protein [Lactococcus lactis subsp.
lactis KF147]
Length = 225
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 100/201 (49%), Gaps = 17/201 (8%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SVS+VAV+K VD+ R G AEN+ + +K+ L K+ ++ IGSLQ K
Sbjct: 27 SVSVVAVTKSVDANLAREVFENGVSHLAENRTELFLEKYEAL-KDLEITWHLIGSLQRRK 85
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQVNTGYEIQKSGIMPNQTKDF 145
V ++++ D + K L+ E+ K++ + +I++N E K G N+ +
Sbjct: 86 VKQVINYVDYFHALDSLK----LAQEINKRAEHTIKCFIELNISGEESKHGFSVNELMEI 141
Query: 146 VILCRQKYQLNVEGLMCIPP----------AMGNPKPHFYLLSEIA-RECKLTKLSMGMT 194
+ + + + GLM + P G K +SE+ T+LSMGM+
Sbjct: 142 LPEFSELENIEIVGLMTMAPFDATESECNDIFGRMKKLQVEISEMNLSRIPCTELSMGMS 201
Query: 195 RDFELAIASGATSVRIGSGIF 215
RD+E+AI +GAT VRIG+ F
Sbjct: 202 RDYEIAIKNGATFVRIGTEFF 222
>gi|222823754|ref|YP_002575328.1| hypothetical protein Cla_0749 [Campylobacter lari RM2100]
gi|222538976|gb|ACM64077.1| conserved hypothetical protein [Campylobacter lari RM2100]
Length = 205
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 108/210 (51%), Gaps = 20/210 (9%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE----W 72
+I K K +V L+A SK V ++IR G F EN++Q + L+KE
Sbjct: 4 ESIFEKTIKQNVRLIAASKYVQDEQIRELFKQGIFEFGENQVQA-----LALKKEKLQDL 58
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
+++ FIG+LQSNK++ ++ V+ ++ + K A + + L +++NT E
Sbjct: 59 EIKWHFIGNLQSNKINLLIKQKPVLWQSCNGIKIAKAVDKRL---EYKLDTLLEINTANE 115
Query: 132 IQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPK-----PHFYLLSEIARECK 185
KSGI N+ ++++ + + LN+ G+MCI AM K + + E ++
Sbjct: 116 NSKSGIEQNKAIEEYLQIQEECENLNLVGIMCIG-AMNEEKVQEGFEQTFKIYENLQKHG 174
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
SMGM+ DFELAI G+ VR+GS +F
Sbjct: 175 AKICSMGMSGDFELAIKCGSNMVRLGSILF 204
>gi|157415006|ref|YP_001482262.1| hypothetical protein C8J_0686 [Campylobacter jejuni subsp. jejuni
81116]
gi|157385970|gb|ABV52285.1| hypothetical protein C8J_0686 [Campylobacter jejuni subsp. jejuni
81116]
gi|307747644|gb|ADN90914.1| Putative uncharacterized protein [Campylobacter jejuni subsp.
jejuni M1]
gi|315931921|gb|EFV10876.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
327]
Length = 210
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 104/198 (52%), Gaps = 12/198 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-AKKKWIPLRKEWDVQLRFIGSLQSN 85
+V LVA SK VD+ I G V F EN++Q A+KK K+ D++ FIG+LQSN
Sbjct: 12 NVRLVAASKYVDASTIEKLFDQGIVEFGENQVQALAQKKENLDEKKLDIKWHFIGTLQSN 71
Query: 86 KVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-K 143
K++ ++ ++ + + K A + + L +++N+ E KSG+ PNQ +
Sbjct: 72 KINLLIKQKPILWHSCNGIKIAKAMDKRL---DYKLNTLLEINSANENSKSGLDPNQAVE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKP------HFYLLSEIARECKLTKLSMGMTRDF 197
+++ + + LN+ G+M I + + + + EI ++ SMGM+ DF
Sbjct: 129 EYLQIQEECSNLNLCGVMSIGSHSQDKESIIKSFETTFKIYEILQKHGAKICSMGMSNDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
E+AI G+ VR+GS +F
Sbjct: 189 EIAIKCGSNLVRLGSILF 206
>gi|307707456|ref|ZP_07643938.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
gi|307616408|gb|EFN95599.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
Length = 223
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 109/223 (48%), Gaps = 18/223 (8%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N +VF+Q I++++ A R +SVS+VAV+K VD L G EN++ + +K
Sbjct: 6 NTERVFQQ-IKDASQQAGREANSVSVVAVTKYVDVPTAEALLPLGVHHIGENRVDKFLEK 64
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RFLPVY 123
+ L K+ ++ IG+LQ KV +++ D + K A E+ K+S R + +
Sbjct: 65 YEAL-KDRNITWHLIGTLQRRKVKDVIQYVDYFHALDSLKLAE----EIQKRSDRVVKCF 119
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVN E K G + + + ++ GLM + P + K F ++
Sbjct: 120 LQVNISREESKHGFSREELLELLPELATLDKIEYVGLMTMAPFEASSDELKEIFKATQDL 179
Query: 181 ARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E + +T LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 180 QLEIREKQIPNMPMTDLSMGMSRDYKEAIEFGSTFVRIGTAFF 222
>gi|313617990|gb|EFR90145.1| pyridoxal phosphate enzyme, YggS family [Listeria innocua FSL
S4-378]
Length = 208
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 23/210 (10%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R + V+LVAV+K +D I G F EN+ K L + D+ +IGSL
Sbjct: 2 RQQADVTLVAVTKTIDVAGITELYDLGIRHFGENRADVFLDKTRELADKDDICWHYIGSL 61
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRFLPVYIQVNTGYEIQKSGIMPNQ 141
Q+ KV +++ D + ++ R S L+ E+ K+ ++ + ++QVN E K G +
Sbjct: 62 QTRKVKDVLPEIDYLHSLDR----SSLAKEIEKRATKPIKCFLQVNISGEESKHGFSKEE 117
Query: 142 TKDFVILCRQKYQLN---VEGLMCIPPAMGNPKPHFYLLSEIA-----------RECKLT 187
F+ Q+ N + GLM + P + K ++ E+ + T
Sbjct: 118 ALSFL----QEADFNFIEIIGLMTMAPITNSDKELHHVFHELKQLQQEIHALQLKNVPCT 173
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+LSMGMT D+ +AI GAT +R+G + +
Sbjct: 174 ELSMGMTNDYGIAITEGATFIRVGRALVSD 203
>gi|116512746|ref|YP_811653.1| TIM-barrel fold family protein [Lactococcus lactis subsp. cremoris
SK11]
gi|116108400|gb|ABJ73540.1| Predicted enzyme with a TIM-barrel fold [Lactococcus lactis subsp.
cremoris SK11]
Length = 225
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 97/200 (48%), Gaps = 15/200 (7%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SVS+VAV+K V++ R G AEN+ + +K+ L K+ ++ IG+LQ K
Sbjct: 27 SVSVVAVTKSVEANLAREVFENGISHLAENRTELFLEKYEAL-KDCEITWHLIGNLQRRK 85
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V ++++ D + K A +S + + +I+VN E K G ++ K+ +
Sbjct: 86 VKKVINYVDYFHALDSLKLAQEISK---RAEHLIKCFIEVNISGEESKHGFSVDELKETL 142
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK--------LTKLSMGMTR 195
+ + + GLM + P F + E+ E T+LSMGM+R
Sbjct: 143 ADFSELENIEIVGLMTMAPFDATESECNDIFGRMKELQVEISEMNLPKIPCTELSMGMSR 202
Query: 196 DFELAIASGATSVRIGSGIF 215
D+E+AI +GAT VRIG+ F
Sbjct: 203 DYEIAIKNGATFVRIGTEFF 222
>gi|283458369|ref|YP_003362992.1| hypothetical protein RMDY18_13400 [Rothia mucilaginosa DY-18]
gi|283134407|dbj|BAI65172.1| predicted enzyme with a TIM-barrel fold [Rothia mucilaginosa DY-18]
Length = 278
Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 95/228 (41%), Gaps = 35/228 (15%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK------WIPLRKEWDVQLRFIGS 81
V LV V+K + L G +F EN+ QEA K + R+ FIG
Sbjct: 50 VQLVTVTKFFPASDAAALLDGGVTLFGENRDQEASAKARELAAYCAQREVQPPHWAFIGQ 109
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRF---------------LPVYIQ 125
LQ+NK +V + +V R A L+ Q SRF L +Q
Sbjct: 110 LQTNKAKSVVKYASSVHSVDRPSLADALAKAYANQLSRFEAGEAPAPAAAEHGALTCLVQ 169
Query: 126 VN------TGY--EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF--- 174
V+ G+ E + G ++ + V L G+M + P NP F
Sbjct: 170 VSLAEVATAGHAAEGARGGTSASELLELVERIENHEHLRCGGVMAVAPLGMNPDEAFEKL 229
Query: 175 YLLSEIARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
Y L+ + RE T++S GM+ D E A+ G+T VR+GS I G+RP
Sbjct: 230 YGLASLVREQVPHATEISAGMSGDLEAAVRWGSTCVRVGSDIMGKRPA 277
>gi|289614726|emb|CBI58503.1| unnamed protein product [Sordaria macrospora]
Length = 260
Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 123/250 (49%), Gaps = 47/250 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKI---RVALSCGQVIFAENKL 58
+L ++LQ +++I A+ RP V LVAVSK+ + I A QV F EN
Sbjct: 15 ALVSQLQGVQERI--LAVAKGRP---VRLVAVSKLKPANDILALHQAPQVKQVHFGENYA 69
Query: 59 QEAKKK--WIPLRKEWDVQLRFIGSLQSNK---VSEIVSLFDV--IETVSREKTASLLSL 111
QE ++K +P +W FIG LQS +++I +LF V ++++ + +T + +
Sbjct: 70 QELQQKAELLPRTIKW----HFIGGLQSTHCKPLAKISNLFAVSSLDSLKKAQTLNRVRG 125
Query: 112 EMIKQSRF-------LPVYIQVNTGYEIQKSGIMPNQTKDFVILCR----QKYQLNVEGL 160
E+I S L V++QVNT E KSG P Q + V LC+ + L + GL
Sbjct: 126 ELIASSSTPENQIEKLNVHVQVNTSGEESKSGCSPGQ--ETVDLCKAIVNECPHLKLLGL 183
Query: 161 MCI-------PPAMGNPKPHFYLLSE----IARECKLTK----LSMGMTRDFELAIASGA 205
M I N F +L E + +E L + LSMGM+ DFE AI G+
Sbjct: 184 MTIGAIARSKATTPENENEDFVVLREQRELVEKELGLEEGSLELSMGMSEDFEGAIVMGS 243
Query: 206 TSVRIGSGIF 215
+ VR+GS IF
Sbjct: 244 SEVRVGSTIF 253
>gi|184201123|ref|YP_001855330.1| hypothetical protein KRH_14770 [Kocuria rhizophila DC2201]
gi|183581353|dbj|BAG29824.1| hypothetical protein [Kocuria rhizophila DC2201]
Length = 297
Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 106/256 (41%), Gaps = 40/256 (15%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSV------SLVAVSKMVDSKKIRVALSCGQVIFAEN 56
L +L +++I ++A A+RP+D SLV V+K ++ + G EN
Sbjct: 42 LAQRLSAVRRRILDAA--AQRPEDRSHGGELPSLVVVTKFFPAQDVLRLRELGVRAVGEN 99
Query: 57 KLQEAKKKWIPLRKEWDVQ--------LRFIGSLQSNKVSEIVSLFDVIETVSREKTASL 108
K QEA K + +E ++ F+G LQSNK +V + +V R +
Sbjct: 100 KDQEAGPKAAEVAEELALREPSVTPPVWHFVGQLQSNKAKHVVRYASWVHSVDRPSLVTA 159
Query: 109 LSLEMIKQ---------------SRFLPVYIQVN----TGYEIQKSGIMPNQTKDFVILC 149
L + +R L +QV+ + + G P+ +
Sbjct: 160 LGKAVRNHRDAVAAGDAAPGPCATRDLTCLVQVDVDPHAAEQGGRGGAHPDAVAELADAI 219
Query: 150 RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA-----RECKLTKLSMGMTRDFELAIASG 204
L++ G+M + P P+ F L EI+ R +S GM+ D E A+ +G
Sbjct: 220 AGTEGLSLGGVMTVAPRGARPEEAFERLWEISQRLQRRHPDARAVSAGMSGDLEAAVGAG 279
Query: 205 ATSVRIGSGIFGERPC 220
AT VRIGS + G RP
Sbjct: 280 ATHVRIGSDVLGARPA 295
>gi|323489504|ref|ZP_08094731.1| hypothetical protein GPDM_09165 [Planococcus donghaensis MPA1U2]
gi|323396635|gb|EGA89454.1| hypothetical protein GPDM_09165 [Planococcus donghaensis MPA1U2]
Length = 223
Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 16/202 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
D++ ++AV+K V ++ + A+ G EN+ + KK + + +V +IG+LQ+
Sbjct: 20 DTIQIIAVTKQVGIERTKEAIQAGIHHLGENRPEGLSKKLEAIDE--NVSWHYIGNLQTR 77
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV ++++ D + ++ R SL + +R + ++QVN E KSGI P T +F
Sbjct: 78 KVKDVINEIDYLHSLDR---LSLAKEIQKRATRPVNCFVQVNVSGEESKSGIEPEDTINF 134
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA--------RECKLTKLSMGMT 194
+ + V GLM + P + + F L + T+ SMGM+
Sbjct: 135 IESLEAYDNIKVVGLMTMAPNTSDESVIREAFKGLKSLQLQVSEKNWAHAPCTECSMGMS 194
Query: 195 RDFELAIASGATSVRIGSGIFG 216
D+ +A GA+ VRIG+ + G
Sbjct: 195 NDYLIAAQEGASFVRIGTALVG 216
>gi|307565803|ref|ZP_07628265.1| pyridoxal phosphate enzyme, YggS family [Prevotella amnii CRIS
21A-A]
gi|307345488|gb|EFN90863.1| pyridoxal phosphate enzyme, YggS family [Prevotella amnii CRIS
21A-A]
Length = 223
Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 103/215 (47%), Gaps = 17/215 (7%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
++L + P + V L+AVSK + I A + GQ F E+ +QE KK L K D++
Sbjct: 10 SVLRELP-NGVKLIAVSKYHPIEYIEAAYAEGQRAFGESLVQELSKKVTSLPK--DIEWH 66
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
FIG LQ+NKV IV +IE V K + + K +R + V ++++ E K G
Sbjct: 67 FIGHLQTNKVKYIVPYISMIEAVDSVKLLREIEKQASKYNRVIKVLLELHIAKEESKYGF 126
Query: 138 MPNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNPK-------PHFYLLSEIAR-----E 183
+ F+ R + + GLM + + + + EI + +
Sbjct: 127 SFEDCRAFIDSGEWRNMSHVCISGLMMMASNVSDKEQVRKEMLSASIFFDEIKKKYFSDK 186
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ S GM++D+++A++ +T VRIG+ IFG R
Sbjct: 187 ASFKERSWGMSQDYDVAVSCNSTMVRIGTKIFGPR 221
>gi|311741534|ref|ZP_07715358.1| YggS family pyridoxal phosphate enzyme [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311303704|gb|EFQ79783.1| YggS family pyridoxal phosphate enzyme [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 232
Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 93/207 (44%), Gaps = 24/207 (11%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF--IGSLQSNKV 87
L+ V+K + I + G AEN+ QEA+ K L QLRF IG +Q+ K
Sbjct: 33 LLPVTKFHPAADISLLADLGVTDVAENREQEARAKAAEL-----PQLRFHMIGQIQTKKA 87
Query: 88 SEIVSLFDVIETVSREKTASLL------SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
+ + + ++ K A L + E ++ LPV+IQV+ + + G+ P+
Sbjct: 88 NHVARWAASVHSLDSLKLAHALERGVSLAKERGEREGNLPVFIQVSVDGDGARGGVTPDV 147
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY--------LLSEIARECKLTKLSMGM 193
+ V L + GLM +PP + F L SE+ R K S GM
Sbjct: 148 LDEVVRAVEDAQHLELAGLMVVPPLDADAGEVFRNVRGEVDRLSSELNRPLKF---SAGM 204
Query: 194 TRDFELAIASGATSVRIGSGIFGERPC 220
+ D AIA+G+ VR+G+ I G RP
Sbjct: 205 SADMAEAIAAGSDIVRVGTSIMGPRPV 231
>gi|168575146|ref|ZP_02721109.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
MLV-016]
gi|183578772|gb|EDT99300.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
MLV-016]
Length = 223
Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 25/231 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
+K+ L K+ DV IG+LQ KV +++ D + K A E+ K+S R
Sbjct: 61 FLEKYEAL-KDRDVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAG----EIQKRSDRV 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ ++QVN E K G + + + + ++ GLM + P + + L E
Sbjct: 116 IKCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQ----LKE 171
Query: 180 IARECK---------------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
I + + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 172 IFKAAQDLQIEIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|172037628|ref|YP_001804129.1| hypothetical protein cce_2715 [Cyanothece sp. ATCC 51142]
gi|171699082|gb|ACB52063.1| UPF0001-containing protein [Cyanothece sp. ATCC 51142]
Length = 218
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 102/209 (48%), Gaps = 10/209 (4%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
I+ + P D + LVAV+K I+ A + G FAE+++QEA +K L+ D+ F
Sbjct: 10 IMGQIPSD-IRLVAVTKKKSVAAIKEAYNYGIRDFAESRVQEALEKQEQLQDYQDICWHF 68
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG +Q+NK +++ F I +V K A L K V +QV + K G
Sbjct: 69 IGHIQTNKAKKVLENFHWIHSVDSLKLAEYLDKLAAKTFISPHVCLQVKILPDPNKYGWT 128
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPP-------AMGNPKPHFYLLSEIAREC--KLTKL 189
+ + + ++GLM I P + + L ++I + +L +L
Sbjct: 129 VEELWQDLPELESFKHIKIDGLMTILPLGLSQVECLDTFEKTKKLATKITEKSSLQLKEL 188
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMGM+ D+ LA+ GAT +R+G+ IFGER
Sbjct: 189 SMGMSNDYLLAVEKGATMIRLGTIIFGER 217
>gi|171689970|ref|XP_001909924.1| hypothetical protein [Podospora anserina S mat+]
gi|170944947|emb|CAP71058.1| unnamed protein product [Podospora anserina S mat+]
Length = 268
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 118/254 (46%), Gaps = 49/254 (19%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKI---RVALSCGQVIFAENKL 58
+L ++LQ K KI +A+ RP V LVAVSK+ + I A + F EN
Sbjct: 16 ALISQLQGVKDKI--AAVAKGRP---VRLVAVSKLKPANDILALHEAPETKHLHFGENYS 70
Query: 59 QE--AKKKWIPLRKEWDVQLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLLSLEM 113
QE K + +P +W FIG LQS +++I +LF I ++ K A LL
Sbjct: 71 QELTQKAELLPRTIQW----HFIGGLQSKHTKNLAKIPNLF-CISSIDTLKKAELLDKYR 125
Query: 114 IKQSRF---------LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ----LNVEGL 160
Q + V++QVNT E KSG P Q + V LC++ L + GL
Sbjct: 126 GDQIAAATNPDIFGKIKVHVQVNTSGEESKSGCAPGQ--ETVKLCKKIENECPNLELLGL 183
Query: 161 MCI-------PPAMGNPKPHFYLLSE---IAR------ECKLTKLSMGMTRDFELAIASG 204
M I N F +L E + R E +L +LSMGM+ DFE AIA G
Sbjct: 184 MTIGAIARSRETTPENENEDFQVLREQRDLVRKELGLGEERLLELSMGMSEDFEGAIAMG 243
Query: 205 ATSVRIGSGIFGER 218
+ VR+GS IFG R
Sbjct: 244 SDEVRVGSTIFGAR 257
>gi|332667877|ref|YP_004450665.1| hypothetical protein Halhy_5969 [Haliscomenobacter hydrossis DSM
1100]
gi|332336691|gb|AEE53792.1| protein of unknown function UPF0001 [Haliscomenobacter hydrossis
DSM 1100]
Length = 252
Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 95/214 (44%), Gaps = 32/214 (14%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+ LVAVSK + I GQ IF ENK+QE K+ L K D++ IG LQSNK
Sbjct: 43 TARLVAVSKTQPHEAIMQLYEQGQRIFGENKVQELVPKYEALPK--DIEWHLIGHLQSNK 100
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ-------------VNTGYEIQ 133
V I +I +V K + + + + R + +Q +N Y +
Sbjct: 101 VKFIAPFVAMIHSVDSLKLLAEIDKQAAQHQRTIDCLLQFKINDEETKFGLDINEAYALL 160
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-----AR----EC 184
+S PN + +C V G+ + F L +I AR E
Sbjct: 161 ESATYPNLQH--IRIC------GVMGMASFVEDKAQIQREFKALKQIFDTLKARYFPNEA 212
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++SMGM+ D+ +A+A G+T VRIG+ +FG R
Sbjct: 213 SFKEISMGMSDDYSIAVAEGSTLVRIGTLLFGAR 246
>gi|73669788|ref|YP_305803.1| hypothetical protein Mbar_A2299 [Methanosarcina barkeri str.
Fusaro]
gi|72396950|gb|AAZ71223.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
Length = 214
Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 25/205 (12%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK--KWIPLRKEWDVQLRFIGSLQS 84
V+LVA K +I A+ G N Q+ K + P +++ FIG+LQ
Sbjct: 16 DVTLVAAVKYASKIQIDEAIKVGVTDIGFNHYQQMKDLAPYYP----PEIKTHFIGTLQL 71
Query: 85 NKVSEIVSLFD-VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NK ++V+L +IE+V + A ++ + R + IQV T E + +G+ P
Sbjct: 72 NKAKKVVNLNPYLIESVDSYELAEKINNAAKENKRIQKILIQVKTD-EKKHTGLEPG--- 127
Query: 144 DFVILCRQ----KYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK------LTKLS 190
D + L Q +Y L+ EGLM IPP +P + +F L ++ + + L LS
Sbjct: 128 DLLKLLDQISTLEY-LSFEGLMTIPPKNEDPEDSRKYFKELKDLKDKAEKHLKKHLQYLS 186
Query: 191 MGMTRDFELAIASGATSVRIGSGIF 215
MGMT D+++AI GA+ VRIG IF
Sbjct: 187 MGMTDDYQIAIEEGASIVRIGRKIF 211
>gi|86151834|ref|ZP_01070048.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni 260.94]
gi|86153552|ref|ZP_01071756.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni HB93-13]
gi|121613343|ref|YP_001000415.1| hypothetical protein CJJ81176_0742 [Campylobacter jejuni subsp.
jejuni 81-176]
gi|167005357|ref|ZP_02271115.1| hypothetical protein Cjejjejuni_03810 [Campylobacter jejuni subsp.
jejuni 81-176]
gi|283956128|ref|ZP_06373615.1| hypothetical protein C1336_000100090 [Campylobacter jejuni subsp.
jejuni 1336]
gi|85841463|gb|EAQ58711.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni 260.94]
gi|85843278|gb|EAQ60489.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni HB93-13]
gi|87249354|gb|EAQ72314.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni 81-176]
gi|283792448|gb|EFC31230.1| hypothetical protein C1336_000100090 [Campylobacter jejuni subsp.
jejuni 1336]
Length = 210
Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 104/198 (52%), Gaps = 12/198 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-AKKKWIPLRKEWDVQLRFIGSLQSN 85
+V LVA SK VD+ I G V F EN++Q A+KK K+ D++ FIG+LQSN
Sbjct: 12 NVRLVAASKYVDASIIEKLFDQGIVEFGENQVQALAQKKENLDEKKLDIKWHFIGTLQSN 71
Query: 86 KVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-K 143
K++ ++ ++ + + K A + + L +++N+ E KSG+ PNQ +
Sbjct: 72 KINLLIKQKPILWHSCNGIKIAKAMDKRL---DYKLNTLLEINSANENSKSGLDPNQAVE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKP------HFYLLSEIARECKLTKLSMGMTRDF 197
+++ + + LN+ G+M I + + + + EI ++ SMGM+ DF
Sbjct: 129 EYLQIQEECSNLNLCGVMSIGSHSQDKESIIKSFETTFKIYEILQKHGAKICSMGMSNDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
E+AI G+ VR+GS +F
Sbjct: 189 EIAIKCGSNLVRLGSILF 206
>gi|255326234|ref|ZP_05367320.1| pyridoxal phosphate enzyme, YggS family [Rothia mucilaginosa ATCC
25296]
gi|255296688|gb|EET76019.1| pyridoxal phosphate enzyme, YggS family [Rothia mucilaginosa ATCC
25296]
Length = 277
Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 95/228 (41%), Gaps = 35/228 (15%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK------WIPLRKEWDVQLRFIGS 81
V LV V+K + L G +F EN+ QEA K + R+ FIG
Sbjct: 49 VQLVTVTKFFPASDAAALLDGGVSLFGENRDQEASAKARELAAYCAQREVQPPHWAFIGQ 108
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRF---------------LPVYIQ 125
LQ+NK +V + +V R A L+ Q SRF L +Q
Sbjct: 109 LQTNKAKSVVKYASSVHSVDRPSLADALAKAYANQLSRFEAGEAPAPAAAEQGALTCLVQ 168
Query: 126 VN------TGY--EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF--- 174
V+ G+ E + G ++ + V L G+M + P NP F
Sbjct: 169 VSLAEVATAGHAAEGARGGTSASELLELVERIENHEHLRCGGVMAVAPLGMNPDAAFEKL 228
Query: 175 YLLSEIARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
Y L+ + RE T++S GM+ D E A+ G+T VR+GS I G+RP
Sbjct: 229 YGLASLVREQVPHATEISAGMSGDLEAAVRWGSTCVRVGSDIMGKRPA 276
>gi|57237021|ref|YP_178823.1| hypothetical protein CJE0819 [Campylobacter jejuni RM1221]
gi|86149761|ref|ZP_01067990.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|88596934|ref|ZP_01100170.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni 84-25]
gi|148926684|ref|ZP_01810365.1| hypothetical protein Cj8486_0738c [Campylobacter jejuni subsp.
jejuni CG8486]
gi|218562358|ref|YP_002344137.1| hypothetical protein Cj0719c [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|57165825|gb|AAW34604.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
RM1221]
gi|85839579|gb|EAQ56839.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|88190623|gb|EAQ94596.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni 84-25]
gi|112360064|emb|CAL34856.1| conserved hypothetical protein Cj0719c [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|145845203|gb|EDK22298.1| hypothetical protein Cj8486_0738c [Campylobacter jejuni subsp.
jejuni CG8486]
gi|284925975|gb|ADC28327.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
IA3902]
gi|315058182|gb|ADT72511.1| hypothetical protein CJS3_0770 [Campylobacter jejuni subsp. jejuni
S3]
gi|315926835|gb|EFV06209.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|315930590|gb|EFV09622.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
305]
Length = 210
Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 104/198 (52%), Gaps = 12/198 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-AKKKWIPLRKEWDVQLRFIGSLQSN 85
+V LVA SK VD+ I G V F EN++Q A+KK K+ D++ FIG+LQSN
Sbjct: 12 NVRLVAASKYVDASIIEKLFDQGIVEFGENQVQALAQKKENLDEKKLDIKWHFIGTLQSN 71
Query: 86 KVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-K 143
K++ ++ ++ + + K A + + L +++N+ E KSG+ PNQ +
Sbjct: 72 KINLLIKQKPILWHSCNGIKIAKAMDKRL---DYKLNTLLEINSANENSKSGLDPNQAVE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPK------PHFYLLSEIARECKLTKLSMGMTRDF 197
+++ + + LN+ G+M I + + + + EI ++ SMGM+ DF
Sbjct: 129 EYLQIQEECSNLNLCGVMSIGSHSQDKENIIKSFETTFKIYEILQKHGAKICSMGMSNDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
E+AI G+ VR+GS +F
Sbjct: 189 EIAIKCGSNLVRLGSILF 206
>gi|325110552|ref|YP_004271620.1| hypothetical protein Plabr_4021 [Planctomyces brasiliensis DSM
5305]
gi|324970820|gb|ADY61598.1| protein of unknown function UPF0001 [Planctomyces brasiliensis DSM
5305]
Length = 239
Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 19/214 (8%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE-----W 72
A A R + L+AV+K + + L G+ E++ Q+ K + ++ W
Sbjct: 25 AAYAGRDDERPKLIAVTKYARDEWVEALLQLGECQLGESRPQQLKARSEQFARQTNRPCW 84
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
IG LQ NKV I+ ++ +V + + + + + +QVN E
Sbjct: 85 ----HMIGQLQRNKVRSIIDATAMVHSVDSLRLLNHIDRIAGEVGVTPALLLQVNVSGEE 140
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR---------- 182
KSG P + + + + GLM + P + + + S++ +
Sbjct: 141 SKSGFSPEEIRAAAEQLTDFNNVQISGLMTLAPKTDDEQTARQVFSDLRKMREELQTRNN 200
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ KLT+LSMGMT DFE AI G+T VRIGSG++
Sbjct: 201 QLKLTELSMGMTNDFEWAIQEGSTMVRIGSGLYA 234
>gi|253733573|ref|ZP_04867738.1| possible TIM-barrel fold protein [Staphylococcus aureus subsp.
aureus TCH130]
gi|253728443|gb|EES97172.1| possible TIM-barrel fold protein [Staphylococcus aureus subsp.
aureus TCH130]
Length = 224
Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 103/209 (49%), Gaps = 34/209 (16%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNK 86
+++AV+K V ++ + A G F EN+L+ KK+ +P D + FIGSLQS K
Sbjct: 28 NVIAVTKYVTIERAKEAYEAGIRHFGENRLEGFFQKKEALP----SDAVIHFIGSLQSRK 83
Query: 87 VSEIVSLFDVIETVSREKTASLLSL--EMIKQSRF-LPVYIQVNTGYEIQKSGIMPNQTK 143
V +++ D + R LSL E+ K++ + ++QVN E K GI
Sbjct: 84 VKGVINDVDYFHALDR------LSLAKEINKRAEHKIKCFLQVNVSGEASKHGIALEDVD 137
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK--------------- 188
F+ ++ ++ + GLM + P + Y+ S + ++ +L K
Sbjct: 138 QFIDDLKKYDKIEIVGLMTMAPLTDDEA---YIRS-LFKQLRLKKEEIQRLNLEYAPCDE 193
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGE 217
LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 194 LSMGMSNDYLIAVEEGATFVRIGTKLVGE 222
>gi|213585554|ref|ZP_03367380.1| hypothetical protein SentesTyph_31522 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 189
Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 85/184 (46%), Gaps = 6/184 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLR--KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP P+ + E
Sbjct: 123 LNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPA----PESDYVRQFE 178
Query: 180 IARE 183
+AR+
Sbjct: 179 VARQ 182
>gi|21282800|ref|NP_645888.1| hypothetical protein MW1071 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486028|ref|YP_043249.1| hypothetical protein SAS1122 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|297208170|ref|ZP_06924600.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300912248|ref|ZP_07129691.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus TCH70]
gi|21204238|dbj|BAB94936.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244471|emb|CAG42899.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|296886909|gb|EFH25812.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300886494|gb|EFK81696.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus TCH70]
gi|329728876|gb|EGG65297.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus 21193]
Length = 224
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 103/209 (49%), Gaps = 34/209 (16%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNK 86
+++AV+K V ++ + A G F EN+L+ KK+ +P D + FIGSLQS K
Sbjct: 28 NVIAVTKYVTIERAKEAYEAGIRHFGENRLEGFLQKKEALP----SDAVIHFIGSLQSRK 83
Query: 87 VSEIVSLFDVIETVSREKTASLLSL--EMIKQSRF-LPVYIQVNTGYEIQKSGIMPNQTK 143
V +++ D + R LSL E+ K++ + ++QVN E K GI
Sbjct: 84 VKGVINDVDYFHALDR------LSLAKEINKRAEHKIKCFLQVNVSGEASKHGIALEDVD 137
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK--------------- 188
F+ ++ ++ + GLM + P + Y+ S + ++ +L K
Sbjct: 138 QFIDDLKKYDKIEIVGLMTMAPLTDDEA---YIRS-LFKQLRLKKEEIQRLNLEYAPCDE 193
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGE 217
LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 194 LSMGMSNDYLIAVEEGATFVRIGTKLVGE 222
>gi|205355561|ref|ZP_03222332.1| hypothetical protein Cj8421_0717 [Campylobacter jejuni subsp.
jejuni CG8421]
gi|205346795|gb|EDZ33427.1| hypothetical protein Cj8421_0717 [Campylobacter jejuni subsp.
jejuni CG8421]
Length = 210
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 104/198 (52%), Gaps = 12/198 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-AKKKWIPLRKEWDVQLRFIGSLQSN 85
+V LVA SK VD+ I G V F EN++Q A+KK K+ D++ FIG+LQSN
Sbjct: 12 NVRLVAASKYVDASIIEKLFDQGIVEFGENQVQALAQKKENLDEKKLDIKWHFIGTLQSN 71
Query: 86 KVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-K 143
K++ ++ ++ + + K A + + L +++N+ E KSG+ PNQ +
Sbjct: 72 KINLLIKQKPILWHSCNGIKIAKAMDKRL---DYKLNTLLEINSANENSKSGLDPNQAVE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPK------PHFYLLSEIARECKLTKLSMGMTRDF 197
+++ + + LN+ G+M I + + + + EI ++ SMGM+ DF
Sbjct: 129 EYLQIQEECSNLNLCGVMSIGSHSQDKENIIKSFETTFKIYEILQKHGAKICSMGMSNDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
E+AI G+ VR+GS +F
Sbjct: 189 EIAIKCGSNLVRLGSILF 206
>gi|15673850|ref|NP_268025.1| hypothetical protein L120355 [Lactococcus lactis subsp. lactis
Il1403]
gi|12724900|gb|AAK05966.1|AE006416_11 conserved hypothetical protein [Lactococcus lactis subsp. lactis
Il1403]
gi|326407361|gb|ADZ64432.1| pyridoxal-5'-phosphate family protein [Lactococcus lactis subsp.
lactis CV56]
Length = 225
Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 100/201 (49%), Gaps = 17/201 (8%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SVS+VAV+K VD+ R G AEN+ + +K+ L K+ ++ IG+LQ K
Sbjct: 27 SVSVVAVTKSVDANLAREVFENGVSHLAENRTELFLEKYEAL-KDLEITWHLIGNLQRRK 85
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQVNTGYEIQKSGIMPNQTKDF 145
V ++++ D + K L+ E+ K++ + +I++N E K G N+ +
Sbjct: 86 VKQVINYVDYFHALDSLK----LAQEINKRAEHTIKCFIELNISGEESKHGFSVNELMEI 141
Query: 146 VILCRQKYQLNVEGLMCIPP----------AMGNPKPHFYLLSEIA-RECKLTKLSMGMT 194
+ + + + GLM + P G K +SE+ T+LSMGM+
Sbjct: 142 LPEFSELENIEIVGLMTMAPFDATESECNDIFGRMKKLQVEISEMNLSRIPCTELSMGMS 201
Query: 195 RDFELAIASGATSVRIGSGIF 215
RD+E+AI +GAT VRIG+ F
Sbjct: 202 RDYEIAIKNGATFVRIGTEFF 222
>gi|148273036|ref|YP_001222597.1| hypothetical protein CMM_1855 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830966|emb|CAN01911.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 243
Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 10/204 (4%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R D V+ + V+K +R + G E++ QEA+ K L V F+G
Sbjct: 42 AGRRPDEVTTIVVTKFQPVSLLRALVELGVRDLGESRHQEAQGKAAELEGTG-VAWHFVG 100
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
LQ K ++ VI +V R L+ + +++R V++QVN + + G+ P
Sbjct: 101 QLQGKKARQVRRYASVIHSVDRPSLVDALASDE-QETR---VFLQVNLTDDDGRGGVRPA 156
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK-----LTKLSMGMTR 195
+ + + V G+M + P G P+ F L I+ + + +S GM+
Sbjct: 157 EAEALAEHAAAASGIRVLGVMAVAPDDGEPRRAFARLRGISDDVRRILPGARAISAGMSG 216
Query: 196 DFELAIASGATSVRIGSGIFGERP 219
D A+ GAT +RIGS I G+RP
Sbjct: 217 DLREALLEGATHLRIGSAITGKRP 240
>gi|322377422|ref|ZP_08051913.1| pyridoxal phosphate enzyme, YggS family [Streptococcus sp. M334]
gi|321281622|gb|EFX58631.1| pyridoxal phosphate enzyme, YggS family [Streptococcus sp. M334]
Length = 223
Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 109/223 (48%), Gaps = 18/223 (8%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N +VF+Q +++++ A R +SVS++AV+K VD L G EN++ + +K
Sbjct: 6 NTERVFQQ-VKDASQQAGREDNSVSVLAVTKYVDVPTAEALLPLGVHHIGENRVDKFLEK 64
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RFLPVY 123
+ L K+ ++ IG+LQ KV +++ D + K A E+ K+S R + +
Sbjct: 65 YEAL-KDRNITWHLIGTLQRRKVKDVIQYVDYFHALDSLKLAE----EIQKRSDRVVKCF 119
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVN E K G + + + ++ GLM + P + K F ++
Sbjct: 120 LQVNISREESKHGFSKEELLELLPELATLDKIEYVGLMTMAPFEASSDELKEIFKATQDL 179
Query: 181 ARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E + +T LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 180 QLEIREKQISNMPMTDLSMGMSRDYKEAIEFGSTFVRIGTAFF 222
>gi|213622408|ref|ZP_03375191.1| hypothetical protein SentesTyp_34798 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 186
Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 85/184 (46%), Gaps = 6/184 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLR--KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP P+ + E
Sbjct: 123 LNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPA----PESDYVRQFE 178
Query: 180 IARE 183
+AR+
Sbjct: 179 VARQ 182
>gi|303236490|ref|ZP_07323077.1| pyridoxal phosphate enzyme, YggS family [Prevotella disiens
FB035-09AN]
gi|302483341|gb|EFL46349.1| pyridoxal phosphate enzyme, YggS family [Prevotella disiens
FB035-09AN]
Length = 223
Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ V L+A+SK ++ + A + GQ IF E+ QE K L K D++ FIG LQ+N
Sbjct: 17 EGVRLIAISKFHPNEYLEAAYNEGQRIFGESHEQELSAKASTLPK--DIEWHFIGHLQTN 74
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV I +IE V K ++ + K +R + + ++++ E+ K G + +
Sbjct: 75 KVKYIAPYISMIEAVDSFKLLKEINKQAAKHNRIINILLELHIAEEVSKYGFKIEECRQL 134
Query: 146 VI--LCRQKYQLNVEGLMC----------IPPAMGNPKPHFYLLSE--IARECKLTKLSM 191
+ R+ +++ GLM I M F + E A + + S
Sbjct: 135 LEEGAWRELKNVHISGLMMMASNTDDEQQIRKEMTQAANFFDEVKEKYFANDPAFKERSW 194
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D+ +AI +T +R+G+ IFG R
Sbjct: 195 GMSNDYPIAIECRSTMIRVGTKIFGPR 221
>gi|50955145|ref|YP_062433.1| hypothetical protein Lxx15220 [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50951627|gb|AAT89328.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 214
Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 9/215 (4%)
Query: 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69
++ + ++A A R D ++ + V+K + +R S G EN+ QEA++K + +
Sbjct: 1 MREGVADAARAAGRSPDELTTIVVTKFHPASLVRELASLGVRDVGENRHQEAQEK-VSVL 59
Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
+ ++ F+G LQS K + V+ ++ R SL+ L ++Q+N
Sbjct: 60 ADLELTWHFVGQLQSKKARQARRYAGVVHSIDR---LSLVDALRNDDGTVLGAFVQLNLT 116
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---YLLSEIAREC-- 184
+ + G+ + V L + G+M + P P F + SE R
Sbjct: 117 DDPARGGVAGRDLEPLVDHILAAPGLRLLGVMAVAPLDEEPARAFERVRVASERVRALAP 176
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ +S GM++D+ AIA+GAT +RIG+ I G RP
Sbjct: 177 EAVAISAGMSQDYREAIAAGATHLRIGTAITGNRP 211
>gi|323310167|gb|EGA63359.1| YBL036C-like protein [Saccharomyces cerevisiae FostersO]
Length = 231
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 105/212 (49%), Gaps = 28/212 (13%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNKV 87
L+ VSK+ + I++ G F EN +QE K K +P D++ FIG LQ+NK
Sbjct: 18 LLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPD----DIKWHFIGGLQTNKC 73
Query: 88 SEIVSLFDV--IETVSREKTASLLSLEMIK-QSRFLPVY--IQVNTGYEIQKSGIMPNQT 142
++ + ++ +ET+ K A L+ K Q P+ +Q+NT E QKSG + N+
Sbjct: 74 KDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSXEDQKSG-LNNEA 132
Query: 143 K-----DFVILCRQKYQLNVEGLMCIPP---AMGNPKPH--FYLLSEIARECKLT----- 187
+ DF + KY + + GLM I + + K + F L E ++
Sbjct: 133 EIFEVIDFFLSEECKY-IKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTSL 191
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
KLSMGM+ DF AI G VRIG+ IFG RP
Sbjct: 192 KLSMGMSADFREAIRQGTAEVRIGTDIFGARP 223
>gi|284036036|ref|YP_003385966.1| alanine racemase domain protein [Spirosoma linguale DSM 74]
gi|283815329|gb|ADB37167.1| alanine racemase domain protein [Spirosoma linguale DSM 74]
Length = 219
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 95/206 (46%), Gaps = 15/206 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
D L+AV+K + +R A G F ENK+QE +K L DVQ IG LQ+N
Sbjct: 15 DKAKLIAVTKTKPVELLREAYEAGCRRFGENKVQEMAEKQPQLPD--DVQWHLIGHLQTN 72
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV I +I +V K ++ + K +R + +Q+ E K G+ + +
Sbjct: 73 KVKYIAPFVALIHSVDSLKLLQEINKQAAKSNRVIDCLLQIYIADEETKFGLSAEEAEAL 132
Query: 146 VILCRQKY--QLNVEGLMCIPPAMGNP----------KPHFYLLSEIARE-CKLTKLSMG 192
+ + + GLM + + K + L +I R + ++LSMG
Sbjct: 133 LNAPELDALSHIRIVGLMGLATNTDDTDKVRLEFRGLKELYDKLGQIKRPMIQFSELSMG 192
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D+ LA+ G+T VR+GS IFG R
Sbjct: 193 MSGDYRLAVEEGSTLVRVGSAIFGSR 218
>gi|151946358|gb|EDN64580.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190408862|gb|EDV12127.1| hypothetical protein SCRG_02999 [Saccharomyces cerevisiae RM11-1a]
gi|207347852|gb|EDZ73897.1| YBL036Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272725|gb|EEU07698.1| YBL036C-like protein [Saccharomyces cerevisiae JAY291]
gi|259144811|emb|CAY77750.1| EC1118_1B15_0870p [Saccharomyces cerevisiae EC1118]
gi|323338793|gb|EGA80008.1| YBL036C-like protein [Saccharomyces cerevisiae Vin13]
gi|323349874|gb|EGA84087.1| YBL036C-like protein [Saccharomyces cerevisiae Lalvin QA23]
Length = 257
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 105/212 (49%), Gaps = 28/212 (13%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNKV 87
L+ VSK+ + I++ G F EN +QE K K +P D++ FIG LQ+NK
Sbjct: 44 LLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPD----DIKWHFIGGLQTNKC 99
Query: 88 SEIVSLFDV--IETVSREKTASLLSLEMIK-QSRFLPVY--IQVNTGYEIQKSGIMPNQT 142
++ + ++ +ET+ K A L+ K Q P+ +Q+NT E QKSG + N+
Sbjct: 100 KDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSREDQKSG-LNNEA 158
Query: 143 K-----DFVILCRQKYQLNVEGLMCIPP---AMGNPKPH--FYLLSEIARECKLT----- 187
+ DF + KY + + GLM I + + K + F L E ++
Sbjct: 159 EIFEVIDFFLSEECKY-IKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTSL 217
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
KLSMGM+ DF AI G VRIG+ IFG RP
Sbjct: 218 KLSMGMSADFREAIRQGTAEVRIGTDIFGARP 249
>gi|269121913|ref|YP_003310090.1| alanine racemase domain protein [Sebaldella termitidis ATCC 33386]
gi|268615791|gb|ACZ10159.1| alanine racemase domain protein [Sebaldella termitidis ATCC 33386]
Length = 223
Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 109/219 (49%), Gaps = 26/219 (11%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-- 70
KIEN + V ++ V+K D ++ + ++ G F ENK Q + K +
Sbjct: 14 KIENDIKKYSPYPEKVKILFVTKYFDIEEHQKIVNMGFNYFGENKAQLFRDKIKTIDNPE 73
Query: 71 -EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS----RFLPVYIQ 125
WD FIG LQ NK+ I+ ++I ++ T SLL E+ +++ R + V IQ
Sbjct: 74 LRWD----FIGRLQKNKIKYIIKRVNLIHSID---TISLLE-EVNEKACEIGRKVDVLIQ 125
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-------KPHFYLLS 178
VN +E K+G ++ D V R +N+ GLM + P + + F + +
Sbjct: 126 VNVSHEETKTGFHVSELSD-VFKVRAD-NINIRGLMTMAPLTDDESELRKYFRETFEVKN 183
Query: 179 EIARECKLT--KLSMGMTRDFELAIASGATSVRIGSGIF 215
+I ++ L +LSMGM+ D++ A+ GAT VRIGS +F
Sbjct: 184 DINKKYNLNLDELSMGMSNDYKEALMEGATIVRIGSKLF 222
>gi|183220725|ref|YP_001838721.1| hypothetical protein LEPBI_I1335 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189910826|ref|YP_001962381.1| PLP dependent enzyme [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167775502|gb|ABZ93803.1| PLP dependent enzyme [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167779147|gb|ABZ97445.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 232
Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 99/212 (46%), Gaps = 25/212 (11%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-----DVQLRFIGSLQ 83
+L+AVSK + +R A G F EN L EA +K+ LR+E+ V L IG +Q
Sbjct: 25 TLIAVSKTKPYQVVRDAYMQGIREFGENYLPEAIEKFTKLREEFPESVNTVNLHHIGPVQ 84
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
S + ++ +F V + + L K+ + + ++Q N E K G
Sbjct: 85 SGTLRKLFGIFSYTHGVGTFSSLTELQKRAEKEKKTIRYFLQTNLTAESTKHGF------ 138
Query: 144 DFVILCRQKYQLNV--------EGLMCIPPAMGN---PKPHFYLLSEIARECKLT--KLS 190
L +K +L++ EG M + P+ G+ K F L+ R+ KLS
Sbjct: 139 SLETLLEKKEELSLYQNEFCIWEGFMGMGPSSGDLLQTKEVFSKLTSF-RDTHFPNLKLS 197
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
MGM+ D++LA G+ VRIGS IFG+R T
Sbjct: 198 MGMSGDYQLAAELGSNFVRIGSKIFGDRDYGT 229
>gi|289167470|ref|YP_003445739.1| hypothetical protein smi_0622 [Streptococcus mitis B6]
gi|288907037|emb|CBJ21871.1| conserved hypothetical protein [Streptococcus mitis B6]
Length = 223
Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 18/223 (8%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N +VF+Q I++++ + R +SVS+VAV+K VD L G EN++ + +K
Sbjct: 6 NTERVFQQ-IKDASQQSGREANSVSVVAVTKYVDVPTAEALLPLGVHHIGENRVDKFLEK 64
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RFLPVY 123
+ L K+ ++ IG+LQ KV +++ D + K A E+ K+S R + +
Sbjct: 65 YEAL-KDRNITWHLIGTLQRRKVKDVIQYVDYFHALDSLKLAE----EIQKRSDRVVKCF 119
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVN E K G + + + ++ GLM + P + K F ++
Sbjct: 120 LQVNISREESKHGFSREELLELLPELATLDKIEYVGLMTMAPFEASSDELKEIFKATQDL 179
Query: 181 ARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E + +T LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 180 QLEIREKQIPNMPMTDLSMGMSRDYKEAIKFGSTFVRIGTAFF 222
>gi|152990444|ref|YP_001356166.1| hypothetical protein NIS_0695 [Nitratiruptor sp. SB155-2]
gi|151422305|dbj|BAF69809.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
Length = 225
Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 109/212 (51%), Gaps = 10/212 (4%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
Q++E A + + V +VAV+K V +++I GQ F E+++Q+ K K L +
Sbjct: 15 QRVEK-ARMERSEHHIVQIVAVTKYVGAEEIEALYELGQRAFGESRVQDLKTKSEAL-GD 72
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFD-VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
++ FIG LQ NK++ ++ L +++++ + A + + ++ + + +Q+N+
Sbjct: 73 LPIEWHFIGRLQKNKINHLIDLDPWLMQSLDSLELAIEIDKRLERKGKKMDCLLQINSAK 132
Query: 131 EIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNP---KPHF---YLLSEIARE 183
E K+G++P D ++ + + +N+ G+M I + + F Y + E +
Sbjct: 133 EESKAGVLPEVAYDEYLKIIEETKHINLCGVMTIGAHTDDTTLIQKSFETTYKIFESLQP 192
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
SMGM+ DFELAI G+ VRIGS F
Sbjct: 193 HGAKICSMGMSNDFELAIRCGSNMVRIGSLFF 224
>gi|169610101|ref|XP_001798469.1| hypothetical protein SNOG_08144 [Phaeosphaeria nodorum SN15]
gi|111063300|gb|EAT84420.1| hypothetical protein SNOG_08144 [Phaeosphaeria nodorum SN15]
Length = 269
Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 104/235 (44%), Gaps = 46/235 (19%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCG----QVIFAENKLQE--AKKKWIPLRKEWDV 74
A + +V L+AVSK+ + I +AL F EN +QE K K +P W
Sbjct: 29 ANKSNRNVRLIAVSKLKPANDI-LALHQPPNPLHTHFGENYVQELLEKSKLLPRSIRW-- 85
Query: 75 QLRFIGSLQSNK---VSEIVSLFDVIETVSREKTASLLS------LEMIKQSRFLPVYIQ 125
IG LQSNK ++E + + +V EK A+ L +E L + +Q
Sbjct: 86 --HMIGGLQSNKCKQLAEQIPNLWCVSSVDSEKKANELEKGRKALIEKDNAVEKLRIMVQ 143
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQ----LNVEGLMCI---------PPAMGNPKP 172
VNT E KSG+ P D LC+ + L + GLM I P N
Sbjct: 144 VNTSGEEAKSGVEP---ADTTALCKHVIEKCPHLELIGLMTIGAIARSKETTPETENED- 199
Query: 173 HFYLL--------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L E+ E +LSMGM+ DFE AI G+ VR+GS IFGERP
Sbjct: 200 -FVCLKDVRDKVAQELGWEQDKLELSMGMSADFEGAIKMGSDEVRVGSQIFGERP 253
>gi|226355701|ref|YP_002785441.1| hypothetical protein Deide_08190 [Deinococcus deserti VCD115]
gi|226317691|gb|ACO45687.1| conserved hypothetical protein [Deinococcus deserti VCD115]
Length = 209
Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 101/220 (45%), Gaps = 17/220 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKI-RVALSCGQVIFAENKLQ 59
MSL L +Q S R S LVAV+K D I R L G E + Q
Sbjct: 1 MSLPEVLAAIRQAEAASG----REPGSARLVAVTKGQDFLSIERSVLKYGAFPLGEGRAQ 56
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIKQS 117
E + K D++ F+G LQ NKV + V+L +E + A ++
Sbjct: 57 ELRDK---AAARPDLEWHFLGPLQRNKVKYLRPVTLVHSLEEIW---QAEAIAQAAQSWG 110
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH--FY 175
R V IQV+ G E+QK G+ P + F R+ L V GLM + P + F
Sbjct: 111 RAPDVLIQVHNG-EVQKHGVDPEKLPGFYSSVRET-GLTVRGLMVMAPEADEAQVRRVFE 168
Query: 176 LLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ A + L++LSMGM+ D+ LA+ +G+T VR+G +F
Sbjct: 169 DTARRAHDLGLSELSMGMSGDYPLAVQAGSTLVRVGRSLF 208
>gi|323334742|gb|EGA76115.1| YBL036C-like protein [Saccharomyces cerevisiae AWRI796]
Length = 231
Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 105/212 (49%), Gaps = 28/212 (13%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNKV 87
L+ VSK+ + I++ G F EN +QE K K +P D++ FIG LQ+NK
Sbjct: 18 LLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPD----DIKWHFIGGLQTNKC 73
Query: 88 SEIVSLFDV--IETVSREKTASLLSLEMIK-QSRFLPVY--IQVNTGYEIQKSGIMPNQT 142
++ + ++ +ET+ K A L+ K Q P+ +Q+NT E QKSG + N+
Sbjct: 74 KDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSREDQKSG-LNNEA 132
Query: 143 K-----DFVILCRQKYQLNVEGLMCIPP---AMGNPKPH--FYLLSEIARECKLT----- 187
+ DF + KY + + GLM I + + K + F L E ++
Sbjct: 133 EIFEVIDFFLSEECKY-IKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTSL 191
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
KLSMGM+ DF AI G VRIG+ IFG RP
Sbjct: 192 KLSMGMSADFREAIRQGTAEVRIGTDIFGARP 223
>gi|228902406|ref|ZP_04066560.1| hypothetical protein bthur0014_35820 [Bacillus thuringiensis IBL
4222]
gi|228966854|ref|ZP_04127898.1| hypothetical protein bthur0004_36600 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228792953|gb|EEM40511.1| hypothetical protein bthur0004_36600 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228857150|gb|EEN01656.1| hypothetical protein bthur0014_35820 [Bacillus thuringiensis IBL
4222]
Length = 217
Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 22/222 (9%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
+ + I+ S A R + LVAV+K V +K + G + EN+ + +K+
Sbjct: 2 IVNEAIKESCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHF 61
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF---LPVYIQ 125
+ V FIGSLQ+ KV EI++ D + ++ R LSL Q R + +IQ
Sbjct: 62 GSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDR------LSLAKEIQKRADKKVKCFIQ 113
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP------HFYLLSE 179
V T E K G+ + F+ ++ ++ V GLM + P + +L
Sbjct: 114 VKTSSEESKQGLAIEEVVSFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQT 173
Query: 180 IARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+E +L +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 174 EVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVG 215
>gi|302419101|ref|XP_003007381.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261353032|gb|EEY15460.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 260
Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 114/248 (45%), Gaps = 44/248 (17%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVI-FAENKLQE 60
+L +L+ ++ ++A RP V LVAVSK+ + I V+ F EN QE
Sbjct: 16 ALTTQLEAVTARLTSAA--KGRP---VRLVAVSKLKPANDILALHRDASVVHFGENYAQE 70
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSN---KVSEIVSLFDVIETVSREKTASLLS----- 110
K +P W FIG LQS K++ I +LF + +V K A LL+
Sbjct: 71 LIQKVDLLPSTLRW----HFIGGLQSGHAKKLAHIPNLF-CVSSVDSLKKARLLNNARAD 125
Query: 111 -LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR----QKYQLNVEGLMCIPP 165
L + L V++QVNT E KSG P + V LCR + LN+ GLM I
Sbjct: 126 LLAHGEDVDKLNVHVQVNTSGEEAKSGAAPGD--ETVALCRAIEDECPALNLLGLMTIG- 182
Query: 166 AMGNPKP--------HFYLLSE-------IARECKLTKLSMGMTRDFELAIASGATSVRI 210
A+ K F L E + +LSMGM+ DFE A+A G+ VRI
Sbjct: 183 AIARSKATTAETENEDFLALKEQRDLVRKELGLERELELSMGMSNDFEGAVAMGSDEVRI 242
Query: 211 GSGIFGER 218
GS IFGER
Sbjct: 243 GSTIFGER 250
>gi|15806385|ref|NP_295091.1| hypothetical protein DR_1368 [Deinococcus radiodurans R1]
gi|12230836|sp|Q9RUL6|Y1368_DEIRA RecName: Full=UPF0001 protein DR_1368
gi|6459124|gb|AAF10940.1|AE001983_1 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 209
Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 101/203 (49%), Gaps = 19/203 (9%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRF 78
A R +V LVAV+K +IR L+ G AEN+ QE + K L EW F
Sbjct: 17 AGRAAGTVRLVAVTKGHSLDEIRGQVLAHGDFPLAENRGQELRDKVAGLPGAEW----HF 72
Query: 79 IGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG 136
IG LQ NK+ + V+L IE + + + + E + L +Q + G E QK G
Sbjct: 73 IGPLQRNKIKYLRGVTLVHSIEEPWQAQAIADAAAEWGQAPAVL---LQRHNG-EGQKHG 128
Query: 137 IMPNQTKDFVILCRQ--KYQLNVEGLMCIPPAMGNPKPH--FYLLSEIARECKLTKLSMG 192
++P+ D + R+ L V GLM + P + F + A++ L +LSMG
Sbjct: 129 VLPD---DLPAVLREVRATGLEVRGLMAMAPYDDEARAAQVFADTARQAQDLGLVELSMG 185
Query: 193 MTRDFELAIASGATSVRIGSGIF 215
M+ D+ LA+A+GAT VR+G +F
Sbjct: 186 MSGDYPLAVAAGATLVRVGRSLF 208
>gi|310778064|ref|YP_003966397.1| alanine racemase domain protein [Ilyobacter polytropus DSM 2926]
gi|309747387|gb|ADO82049.1| alanine racemase domain protein [Ilyobacter polytropus DSM 2926]
Length = 226
Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 103/208 (49%), Gaps = 23/208 (11%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ---EAKKKWIPLRKEWDVQLRFIGSL 82
+ V LVAV+K V ++++ L+ G I EN++Q + K+K+ ++ FIG+L
Sbjct: 23 EKVKLVAVTKYVGTEEMTDVLASGVNIVGENRVQVLKDKKEKFDQSELGSKIKWHFIGNL 82
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQ 141
Q NKV I ++I +V++ A ++ R + V +++N E K G +
Sbjct: 83 QKNKVKYISDYIELIHSVNKLSLAKEINKRAEATDRIIEVLLEINIAGEESKEGYKIEKL 142
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--------------LT 187
K+ + + K + V GLM + P + L+ I RE + L
Sbjct: 143 YKELPEILKLK-NIKVTGLMTMAPFTEDTD----LVRRIFRELRKLKDDLSRDYFQGELK 197
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIF 215
+LSMGM+ D+++A+ GAT +RIGS IF
Sbjct: 198 ELSMGMSGDYKIALEEGATLIRIGSKIF 225
>gi|296140337|ref|YP_003647580.1| alanine racemase domain protein [Tsukamurella paurometabola DSM
20162]
gi|296028471|gb|ADG79241.1| alanine racemase domain protein [Tsukamurella paurometabola DSM
20162]
Length = 236
Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 102/228 (44%), Gaps = 14/228 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +++ + A R + V+L+ V+K + I + G F EN+ QEA
Sbjct: 7 LAEGLAATRSRLDAACRAAGRDRTEVALLPVTKFFPASDIALLQELGCTDFGENREQEAA 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL------SLEMIKQ 116
K L +L +G +Q NK + ++ ++ + A L +LE +
Sbjct: 67 AKAAELTG---ARLHMLGHIQRNKAKSVARWAAMVHSLDSIRLAGALERSTEAALEAGVR 123
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ L V IQ++ + + G+ V Q L + G+M +PP +P+ F
Sbjct: 124 AAPLDVLIQISLDGDPARGGVTRADLAALVETVAQSPSLRLRGVMGVPPLEADPERAFTE 183
Query: 177 LSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L+E+ + + S GM+ D ELA+ G+T VR+G+ I G RP
Sbjct: 184 LAELWTDVRRDHPDADVFSAGMSGDLELAVKLGSTCVRVGTAILGRRP 231
>gi|57167731|ref|ZP_00366871.1| conserved hypothetical protein TIGR00044 [Campylobacter coli
RM2228]
gi|305433236|ref|ZP_07402392.1| YggS family pyridoxal phosphate enzyme [Campylobacter coli JV20]
gi|57020853|gb|EAL57517.1| conserved hypothetical protein TIGR00044 [Campylobacter coli
RM2228]
gi|304443937|gb|EFM36594.1| YggS family pyridoxal phosphate enzyme [Campylobacter coli JV20]
Length = 210
Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 106/198 (53%), Gaps = 12/198 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-AKKKWIPLRKEWDVQLRFIGSLQSN 85
++ LVA SK VD+ I + G F EN++Q +KK I +K+ +++ FIG+LQSN
Sbjct: 12 NIRLVAASKYVDANIIEKLFTQGITEFGENQVQALVQKKEILDKKDLNIKWHFIGTLQSN 71
Query: 86 KVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-K 143
K++ ++ ++ + + K A + + + L +++N+ E+ KSG+ P+Q +
Sbjct: 72 KINLLIKQKPILWHSCNGLKIAKAMDKRL---NYKLDTLLEINSANELSKSGLNPDQAIE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKP------HFYLLSEIARECKLTKLSMGMTRDF 197
+++ + + LN+ G+M I + + Y + E ++ SMGM+ DF
Sbjct: 129 EYLQIQEECPNLNLCGVMSIGSHSEDQREIEKSFETTYKIYEKLQKHGAKICSMGMSNDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
E+AI G+ VR+GS +F
Sbjct: 189 EIAIKCGSNMVRLGSILF 206
>gi|296120723|ref|YP_003628501.1| alanine racemase domain protein [Planctomyces limnophilus DSM 3776]
gi|296013063|gb|ADG66302.1| alanine racemase domain protein [Planctomyces limnophilus DSM 3776]
Length = 258
Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 106/243 (43%), Gaps = 34/243 (13%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L+ +Q+I S + R + V+L+AV+K V + I G E++ Q +
Sbjct: 2 NLKSVEQEIIRSCEKSGRLPNEVTLIAVTKYVHAPVIAALYDLGVRDVGESRPQNLALRR 61
Query: 66 IPL------------RKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS 110
+ R E D++ IG LQ NK VS D I + E+ + L
Sbjct: 62 CEVEALFPSTTSGSTRDEGTLADLKWHLIGHLQRNKAELAVSKADAIHSCDSERLLTRLD 121
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF--------VILCRQKYQLNVEGLMC 162
+ R LP+++++N E+ K G P++ + + C + L V GLM
Sbjct: 122 QLLSATPRPLPLFLEINISGEVSKHGFTPDEARAWWRAQAVERPAGCMAQSHLPV-GLMT 180
Query: 163 IPPAMGNPKPHFYLLS----------EIARECKLTKLSMGMTRDFELAIASGATSVRIGS 212
+ P +P + S ++ E +L LSMGM+ DF +AI GAT VR+GS
Sbjct: 181 MAPIDASPAELVQIFSGLKDLKIELEAMSSEHRLPWLSMGMSGDFPIAIECGATHVRVGS 240
Query: 213 GIF 215
++
Sbjct: 241 RLY 243
>gi|229823113|ref|ZP_04449182.1| hypothetical protein GCWU000282_00409 [Catonella morbi ATCC 51271]
gi|229787279|gb|EEP23393.1| hypothetical protein GCWU000282_00409 [Catonella morbi ATCC 51271]
Length = 228
Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 17/204 (8%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQS 84
++ L+AVSK V + +I+ GQ F EN+ +K L + D+ FIG +Q+
Sbjct: 25 NAPQLIAVSKTVGADQIQALYDLGQRHFGENRYPALLEKQAALAQTAPDIVWHFIGRVQT 84
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQVNTGYEIQKSGIMPNQTK 143
+V E ++ D + + R L+ E+ K++ + ++QVN E K+G P Q
Sbjct: 85 RQVKEFINQIDYLHALDRFD----LAKEIQKRADHPIKCFLQVNVSGEESKTGYEPEQVF 140
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMG-NPKPHFYL-----LSEIARECKL-----TKLSMG 192
+ ++ + GLM + PA + HF+ L + +E T+LSMG
Sbjct: 141 AAIEQLAPYDKIEIVGLMTMAPADALEGELHFFFKTLKHLQLLVQEAGYPHAPCTELSMG 200
Query: 193 MTRDFELAIASGATSVRIGSGIFG 216
M++D+ +A GA+ +R+GS +F
Sbjct: 201 MSQDYTIATEEGASFLRVGSALFA 224
>gi|319949991|ref|ZP_08023976.1| alanine racemase domain protein [Dietzia cinnamea P4]
gi|319436344|gb|EFV91479.1| alanine racemase domain protein [Dietzia cinnamea P4]
Length = 242
Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 16/211 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-----DVQLRFIG 80
D V LV V+K + G EN++QEA K L V+ +G
Sbjct: 31 DEVDLVVVTKFHPVTDVVHLARLGVRDVGENRVQEAAAKVDDLAAADAGLAASVRWNMVG 90
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR------FLPVYIQVNTGYEIQK 134
+QSNK + + D + +V K A+ L + + LPV +Q++ + +
Sbjct: 91 HIQSNKAAAVAGWADRVHSVDSVKVANGLERGRARAADERDGVTSLPVLLQLSLDGDTSR 150
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK-----LTKL 189
G+ L + GLM +PP G+P HF +E+A + T+
Sbjct: 151 GGVTREDLPALADHVAGLGHLRLAGLMVVPPLSGDPAAHFADAAEVAAALRRQHPHATEF 210
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERPC 220
S GM+ D E AIA+G+T VR+G+ I G RP
Sbjct: 211 SAGMSGDIEEAIAAGSTCVRVGTAILGPRPV 241
>gi|307707040|ref|ZP_07643837.1| conserved hypothetical protein [Streptococcus mitis SK321]
gi|307617566|gb|EFN96736.1| conserved hypothetical protein [Streptococcus mitis SK321]
Length = 223
Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 107/223 (47%), Gaps = 18/223 (8%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N +VF+Q I+ S + R +SVS+VAV+K VD L G EN++ + +K
Sbjct: 6 NTERVFQQIIDASQ-QSGREANSVSVVAVTKYVDVPTAEALLPLGVHHIGENRVDKFLEK 64
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RFLPVY 123
+ L K+ ++ IG+LQ KV +++ D + K A E+ K+S R + +
Sbjct: 65 YEAL-KDRNITWHLIGTLQRRKVKDVIQYVDYFHALDSLKLAE----EIQKRSDRVVKCF 119
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVN E K G + + + ++ GLM + P + K F ++
Sbjct: 120 LQVNISREESKHGFSREELLELLPELATLDKIEYVGLMTMAPFEASSDELKEIFKATQDL 179
Query: 181 ARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E + +T LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 180 QLEIREKQIPNMPMTDLSMGMSRDYKEAIEFGSTFVRIGTAFF 222
>gi|291455932|ref|ZP_06595322.1| pyridoxal phosphate enzyme, YggS family [Bifidobacterium breve DSM
20213]
gi|291382341|gb|EFE89859.1| pyridoxal phosphate enzyme, YggS family [Bifidobacterium breve DSM
20213]
Length = 295
Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 106/264 (40%), Gaps = 58/264 (21%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK- 70
+I + +A R SV L+A +K D +I A+S G + EN+ QE K L +
Sbjct: 32 DRIAAAESMAGREAGSVQLLAATKTRDVGEIMAAISAGIHLIGENRPQEVTVKAPGLTRL 91
Query: 71 ------------------------------EWD-----------VQLRFIGSLQSNKVSE 89
+ D + IG LQ+NK+ +
Sbjct: 92 LSERGMSLGVIGGAGAFNGAAASGAANGVGDSDSTGASANAANHISFHLIGQLQANKIGK 151
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
++ + + IE+V + A ++ + + V ++VN E KSG P+ D
Sbjct: 152 VLPVVNTIESVDSIELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRI 211
Query: 150 RQKYQLNVEGLMCIPPAMGNP---KPHFYLL-----------SEIARECKLTKLSMGMTR 195
L ++GLM I + + + F L +E CK +LSMGMT
Sbjct: 212 GAMGGLELQGLMTIGAHVDDERAIRAGFAHLRRTRDQILASGAEGTASCK--ELSMGMTH 269
Query: 196 DFELAIASGATSVRIGSGIFGERP 219
D AI G+T VR+G+ IFGER
Sbjct: 270 DMAYAIEEGSTIVRVGTAIFGERA 293
>gi|311087925|gb|ADP68004.1| hypothetical protein CWU_03555 [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 200
Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 9/197 (4%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
+++VAVSK + I A+ G F EN LQE+ K L+K ++ FIG +QSNK
Sbjct: 4 ITIVAVSKNRNINNIEEAIRSGINNFGENYLQESLIKIENLKKYKNITWHFIGKIQSNKT 63
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
+I F +TV REK A LL+ K + V IQ+N E+Q + + +Q ++
Sbjct: 64 KKIAQNFSWCQTVDREKIAVLLNKFRPKNLPPINVLIQINNLKELQNNRYI-DQYQELAQ 122
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA--------RECKLTKLSMGMTRDFEL 199
L LN+ G+M +P N + +I + + LS+G + D +
Sbjct: 123 LILSMPNLNLRGIMAVPSIKTNVIENNLQYEKIKTIFNRFKRQYSSVDTLSLGTSVDIKE 182
Query: 200 AIASGATSVRIGSGIFG 216
++ + + VRIG IF
Sbjct: 183 SLLATSNMVRIGRNIFN 199
>gi|154149419|ref|YP_001406195.1| hypothetical protein CHAB381_0608 [Campylobacter hominis ATCC
BAA-381]
gi|153805428|gb|ABS52435.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381]
Length = 215
Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 103/211 (48%), Gaps = 36/211 (17%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK---WIPLRKEWDVQLRFIGSL 82
++V L+AVSK VD+ + S GQ+ F EN++QE K+K + L +W FIG+L
Sbjct: 21 ENVKLLAVSKNVDTNAVENLFSQGQIDFGENRVQELKRKCEILVDLPLKW----HFIGTL 76
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF---LPVYIQVNTGYEIQKSGIMP 139
Q NK++++++L V+ ++ + L + R L +++N E KSGI
Sbjct: 77 QKNKINQLITLKPVL-----WQSCNSFELAVAVDKRLDYRLDTLLEINVANEDSKSGISA 131
Query: 140 NQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK---------- 188
++ D + + + LN+ G+M I H L EI + +LT
Sbjct: 132 DEAIDTYRKIKAECKNLNLVGVMSIG-------AHSDDLKEIIKSFELTYKIFENLQKSG 184
Query: 189 ---LSMGMTRDFELAIASGATSVRIGSGIFG 216
SMGM+ DFE AI G+ VR+G ++
Sbjct: 185 AAICSMGMSADFETAIKCGSNMVRLGRILYA 215
>gi|300121038|emb|CBK21420.2| unnamed protein product [Blastocystis hominis]
Length = 618
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 108/219 (49%), Gaps = 29/219 (13%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
K + +VAVSK ++ I+ G F EN +QE K L K D++ IG LQS
Sbjct: 397 KTAPRIVAVSKKKPAEAIQELYDYGHRDFGENYVQELLDKAEALPK--DIRWHLIGHLQS 454
Query: 85 NKVSEIVSLFD---VIETVSREKTASLLSLEMIKQSRFLP--VYIQVNTGYE-------- 131
K ++++ VIE+V K A L+ + R P V+++V+T E
Sbjct: 455 GKCNQLIRKIPNLWVIESVDSIKLAEKLNSACLLAERADPLNVFVEVHTSGEETCALFVC 514
Query: 132 --IQKSGIMPNQT---KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI------ 180
+KSG +P + +F++ +L++ GLM + P+P+F L+ +
Sbjct: 515 LTSRKSGCLPEECLPLAEFIL--SNCPKLHLMGLMTVGKLDAPPEPYFEQLNNLRADLLK 572
Query: 181 -ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E +LSMGM+ D+E A+ G+T++R+G+ IFG R
Sbjct: 573 KHPELGSLELSMGMSGDWETAVKMGSTNIRVGTTIFGAR 611
>gi|153840601|ref|ZP_01993268.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
gi|149745736|gb|EDM56866.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
Length = 214
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 11/183 (6%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD---VQLRFIGSLQSNK 86
L+AVSK + I A GQ F EN +QE K + + ++ FIG +QSNK
Sbjct: 1 LLAVSKTKPVEAILEAYQAGQTAFGENYVQEGVSKVQHFAEHYPDNRIEWHFIGPIQSNK 60
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
+ FD + T+ R K A L+ + ++ + L V IQVNT E KSG+ + +
Sbjct: 61 SRLVAEHFDWVHTIDRAKIAQRLNEQRPQELKPLQVLIQVNTSGEDSKSGVSDAEIFELA 120
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA--------RECKLTKLSMGMTRDFE 198
L + L + GLM IP + + ++A + ++ LSMGM+ D
Sbjct: 121 ELISRLPNLTLRGLMSIPANVSDYDAQLREFEKLATLKQTLEQQYPEIDTLSMGMSGDMT 180
Query: 199 LAI 201
AI
Sbjct: 181 AAI 183
>gi|306817808|ref|ZP_07451549.1| YggS family pyridoxal phosphate enzyme [Mobiluncus mulieris ATCC
35239]
gi|304649457|gb|EFM46741.1| YggS family pyridoxal phosphate enzyme [Mobiluncus mulieris ATCC
35239]
Length = 281
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 76/152 (50%), Gaps = 12/152 (7%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
IG+LQ NK IV+ ++++ + A LS + + R L V +QVN E K G+
Sbjct: 121 MIGNLQRNKAKLIVAYAAELQSLDSLRLAETLSRLLGEAGRELDVMVQVNVSGETVKHGV 180
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPH--FYLLSEIARECKL------ 186
P DF L + G M + + G H F L I R+ +
Sbjct: 181 EPGVALDFAGRVAALPGLRLTGFMGVAAPLSVVGESGVHEAFARLRAI-RDAAVVSIPEA 239
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ DFE+AIA G+T VR+GSG+FG+R
Sbjct: 240 SGLSMGMSGDFEIAIAEGSTCVRLGSGLFGQR 271
>gi|269976640|ref|ZP_06183619.1| pyridoxal phosphate enzyme, YggS family [Mobiluncus mulieris 28-1]
gi|307700576|ref|ZP_07637608.1| pyridoxal phosphate enzyme, YggS family [Mobiluncus mulieris
FB024-16]
gi|269935167|gb|EEZ91722.1| pyridoxal phosphate enzyme, YggS family [Mobiluncus mulieris 28-1]
gi|307614221|gb|EFN93458.1| pyridoxal phosphate enzyme, YggS family [Mobiluncus mulieris
FB024-16]
Length = 281
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 76/152 (50%), Gaps = 12/152 (7%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
IG+LQ NK IV+ ++++ + A LS + + R L V +QVN E K G+
Sbjct: 121 MIGNLQRNKAKLIVAYAAELQSLDSLRLAETLSRLLGEAGRELDVMVQVNVSGETVKHGV 180
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPH--FYLLSEIARECKL------ 186
P DF L + G M + + G H F L I R+ +
Sbjct: 181 EPGVALDFAGRVAALPGLRLTGFMGVAAPLSVVGEAGVHEAFARLRAI-RDVAVVSIPEA 239
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ DFE+AIA G+T VR+GSG+FG+R
Sbjct: 240 SGLSMGMSGDFEIAIAEGSTCVRLGSGLFGQR 271
>gi|125624831|ref|YP_001033314.1| hypothetical protein llmg_2059 [Lactococcus lactis subsp. cremoris
MG1363]
gi|4138105|emb|CAA75617.1| hypothetical protein [Lactococcus lactis subsp. cremoris MG1363]
gi|124493639|emb|CAL98626.1| Hypothetical UPF0001 protein PM0112 [Lactococcus lactis subsp.
cremoris MG1363]
gi|300071629|gb|ADJ61029.1| hypothetical protein LLNZ_10600 [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 225
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 96/200 (48%), Gaps = 15/200 (7%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SVS+VAV+K V++ R G AEN+ + +K+ L K+ ++ IG+LQ K
Sbjct: 27 SVSVVAVTKSVEANLAREVFENGISHLAENRTELFLEKYEAL-KDCEITWHLIGNLQRRK 85
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V ++++ D + K A +S + + +I+VN E K G ++ K+ +
Sbjct: 86 VKKVINYVDYFHALDSLKLAQEISK---RAEHLIKCFIEVNISGEESKHGFSVDELKETL 142
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK--------LTKLSMGMTR 195
+ + + GLM + P F + E+ E +LSMGM+R
Sbjct: 143 ADFSELENIEIVGLMTMAPFDATESECNDIFGRMKELQVEISEMNLPKIPCIELSMGMSR 202
Query: 196 DFELAIASGATSVRIGSGIF 215
D+E+AI +GAT VRIG+ F
Sbjct: 203 DYEIAIKNGATFVRIGTEFF 222
>gi|171914425|ref|ZP_02929895.1| predicted enzyme [Verrucomicrobium spinosum DSM 4136]
Length = 164
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 19/160 (11%)
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS-----LEMIKQSRFLPVYIQVN 127
DV+ IG LQSNKV +++ + + I +V A + L ++ Q +Y++VN
Sbjct: 10 DVRWHLIGHLQSNKVRKVLPVVEAIHSVDSLDLARNIHRIAGELGVVSQ-----IYLEVN 64
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIAREC 184
E K G P + + +LN+ GLM +PP + + +F L E+
Sbjct: 65 VSGEASKYGFEPAGLEAELEELLALDRLNLVGLMTVPPIGESGEESRRYFAELRELRDRL 124
Query: 185 ------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+L LSMGM+ D+E A+ GAT VR+GS IFG R
Sbjct: 125 ETRSGKRLPGLSMGMSGDYETAVEEGATIVRVGSAIFGGR 164
>gi|15617142|ref|NP_240355.1| hypothetical protein BU549 [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681894|ref|YP_002468280.1| hypothetical protein BUAP5A_542 [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219682449|ref|YP_002468833.1| hypothetical protein BUAPTUC7_543 [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|257471599|ref|ZP_05635598.1| hypothetical protein BaphL_02730 [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|11387310|sp|P57614|Y549_BUCAI RecName: Full=UPF0001 protein BU549
gi|25403647|pir||A84994 hypothetical protein [imported] - Buchnera sp. (strain APS)
gi|10039207|dbj|BAB13241.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
gi|219622182|gb|ACL30338.1| hypothetical protein BUAPTUC7_543 [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624737|gb|ACL30892.1| hypothetical protein BUAP5A_542 [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311086270|gb|ADP66352.1| hypothetical protein CWO_02885 [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086845|gb|ADP66926.1| hypothetical protein CWQ_02920 [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|311087434|gb|ADP67514.1| hypothetical protein CWS_02830 [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
Length = 200
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 95/197 (48%), Gaps = 9/197 (4%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
++++AVSK + I A+ G F EN LQE+ K L+K ++ FIG +QSNK
Sbjct: 4 ITIIAVSKNRNINNIEEAIRSGINNFGENYLQESLIKIENLKKYKNITWHFIGKIQSNKT 63
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
+I F +TV REK A LL+ K + V IQ+N E+Q + + +Q ++
Sbjct: 64 KKIAQNFSWCQTVDREKIAVLLNKFRPKNLPPINVLIQINNLKELQNNRYI-DQYQELAQ 122
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA--------RECKLTKLSMGMTRDFEL 199
L LN+ G+M +P N + +I + + LS+G + D +
Sbjct: 123 LILSMPNLNLRGIMAVPSIKTNVIENNLQYEKIKTIFNRFKRQYSSVDTLSLGTSVDIKE 182
Query: 200 AIASGATSVRIGSGIFG 216
++ + + VRIG IF
Sbjct: 183 SLLATSNMVRIGRNIFN 199
>gi|257791830|ref|YP_003182436.1| alanine racemase domain-containing protein [Eggerthella lenta DSM
2243]
gi|257475727|gb|ACV56047.1| alanine racemase domain protein [Eggerthella lenta DSM 2243]
Length = 234
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 21/194 (10%)
Query: 39 SKKIRVALSCGQVIFAENKLQ--EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV 96
+ ++ A+ G F EN+ E K+ P ++ W FIG++QS ++ +IV +
Sbjct: 39 ADEVAEAIEAGAHDFGENRPDSLEGKRARFP-QQTW----HFIGNIQSRRIPDIVRDAAL 93
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156
+ ++ +++ + V ++VN E KSG+ P++ + C +
Sbjct: 94 VHSLYQQRHVPKFDAAAAASGKVQDVLLEVNVSGEASKSGLAPSEVAGMLEYCAGFPHVR 153
Query: 157 VEGLMCIPPAMGNPKPHFYLLSEIAR---ECKL----------TKLSMGMTRDFELAIAS 203
V GLM + P G+ + +++AR E +L +LSMGM+ D+ AIA
Sbjct: 154 VRGLMTMAP-QGDAQRARACFADLARLRDEVRLGLDGEQAAVFDELSMGMSEDWHEAIAE 212
Query: 204 GATSVRIGSGIFGE 217
GAT VRIG +F +
Sbjct: 213 GATIVRIGRALFDD 226
>gi|229162836|ref|ZP_04290793.1| hypothetical protein bcere0009_36060 [Bacillus cereus R309803]
gi|228620718|gb|EEK77587.1| hypothetical protein bcere0009_36060 [Bacillus cereus R309803]
Length = 222
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 108/229 (47%), Gaps = 27/229 (11%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
GN L + + I+ + A R + LVAV+K V +K + G + EN+ + +
Sbjct: 3 GN-LVIVNEAIKETCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFIQ 61
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF---L 120
K+ + V FIGSLQ+ KV EI++ D + ++ R LSL Q R +
Sbjct: 62 KYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDR------LSLAKEIQKRADKKV 113
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+IQV T E K G+ +T F+ ++ ++ V GLM + P + F L
Sbjct: 114 KCFIQVKTSPEESKQGLAIEETISFIQSLQELDKIEVVGLMTMAPFTEEEEEVRRCFKKL 173
Query: 178 SEIARE----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ E CK +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 174 RVLQTEVQGLGLSYAPCK--ELSMGMSNDYTIAIEEGATYIRLGTILVG 220
>gi|288904815|ref|YP_003430037.1| hypothetical protein GALLO_0604 [Streptococcus gallolyticus UCN34]
gi|306830847|ref|ZP_07464009.1| YggS family pyridoxal phosphate enzyme [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|288731541|emb|CBI13096.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
gi|304426870|gb|EFM29980.1| YggS family pyridoxal phosphate enzyme [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
Length = 224
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 103/205 (50%), Gaps = 17/205 (8%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R K+SV+++AV+K VDS + G EN++ K+ L K+ ++ IGSL
Sbjct: 24 RSKESVNVIAVTKYVDSGVAARLIDTGIEHIGENRVDMFLDKYEAL-KDRNLTWHLIGSL 82
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQVNTGYEIQKSGIMPNQ 141
Q KV +++ D + K AS E+ K++ + ++QVN E K G ++
Sbjct: 83 QRRKVKNVINFVDYFHALDSVKLAS----EIQKRAEHTIKCFLQVNISEEESKHGFKVSE 138
Query: 142 TKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECK--------LTKLS 190
+ + + ++ + GLM + P + + F +++ +E + T+LS
Sbjct: 139 IDEALAAISEFDKVEIVGLMTMAPKEASESEIEEIFGKANQLRQELQARQLPHMPFTELS 198
Query: 191 MGMTRDFELAIASGATSVRIGSGIF 215
MGM+ D+++AI +GAT VRIG+ F
Sbjct: 199 MGMSGDYKIAIRNGATFVRIGTSFF 223
>gi|220912344|ref|YP_002487653.1| alanine racemase domain protein [Arthrobacter chlorophenolicus A6]
gi|219859222|gb|ACL39564.1| alanine racemase domain protein [Arthrobacter chlorophenolicus A6]
Length = 245
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 99/235 (42%), Gaps = 23/235 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ +++I + A R L+ ++K + IR + G EN+ QEA
Sbjct: 15 LAQRLEAVRERIAKAVASAGRGGQPPRLIVITKFHPADDIRRLAALGVTDVGENRDQEAA 74
Query: 63 KKWIPLRKE---WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR- 118
K L W F+G LQ+ K +V + +V R + L+ ++ +
Sbjct: 75 AKAAELAGAGLAW----HFVGQLQTKKAKSVVRYAAAVHSVDRPQLVDALAKAVLNEQAA 130
Query: 119 --------FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
F+ V ++ + G + G +P L + G+M + P P
Sbjct: 131 TGREPLDCFIQVSLEDDAGA--HRGGALPADVPALADRIATAEGLRLAGVMAVAPLGAAP 188
Query: 171 KPHFYLLSEIAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+P F L++++ T +S GM++D E AI GAT +RIGS I G RP
Sbjct: 189 EPAFEKLAKVSELLVRDHPAATGISAGMSQDLEAAIKFGATHLRIGSDILGSRPA 243
>gi|229071400|ref|ZP_04204622.1| hypothetical protein bcere0025_35720 [Bacillus cereus F65185]
gi|229081153|ref|ZP_04213663.1| hypothetical protein bcere0023_37920 [Bacillus cereus Rock4-2]
gi|228702197|gb|EEL54673.1| hypothetical protein bcere0023_37920 [Bacillus cereus Rock4-2]
gi|228711691|gb|EEL63644.1| hypothetical protein bcere0025_35720 [Bacillus cereus F65185]
Length = 200
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 99/204 (48%), Gaps = 22/204 (10%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+ LVAV+K V +K + G + EN+ + +K+ K+ V FIGSLQ+ K
Sbjct: 3 DIKLVAVTKTVGIEKTNEVIEAGVIDLGENRNEGFLQKYEHFCKK--VNWHFIGSLQTRK 60
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF---LPVYIQVNTGYEIQKSGIMPNQTK 143
V EI++ D + ++ R LSL Q R + +IQV T E K G+ +
Sbjct: 61 VKEIINEIDYLHSLDR------LSLAKEIQKRADKKVKCFIQVKTSSEESKQGLAIEEVV 114
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKP------HFYLLSEIARECKL-----TKLSMG 192
F+ ++ ++ V GLM + P + +L +E +L +LSMG
Sbjct: 115 SFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTEVQELELLHAPCKELSMG 174
Query: 193 MTRDFELAIASGATSVRIGSGIFG 216
M+ D+++AI GAT +R+G+ + G
Sbjct: 175 MSNDYKIAIEEGATYIRLGTILVG 198
>gi|108800217|ref|YP_640414.1| hypothetical protein Mmcs_3251 [Mycobacterium sp. MCS]
gi|119869345|ref|YP_939297.1| alanine racemase domain-containing protein [Mycobacterium sp. KMS]
gi|108770636|gb|ABG09358.1| Protein of unknown function UPF0001 [Mycobacterium sp. MCS]
gi|119695434|gb|ABL92507.1| alanine racemase domain protein [Mycobacterium sp. KMS]
Length = 254
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 99/215 (46%), Gaps = 24/215 (11%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD---VQLRFIGSLQS 84
++L+ V+K + IR+ G FAE++ QEA KK L E+ V+ +G +Q
Sbjct: 37 IALLPVTKFFPASDIRILYGLGCREFAESREQEASKKAAELAGEFAGDPVRWHMVGRIQR 96
Query: 85 NKVSEIVSLFDVIETVSREKTASLL------SLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
NK + +V K + L +L ++ L VY+Q++ ++++ G+
Sbjct: 97 NKARAVARWAYAAHSVDSAKLIAALDRGAGDALGDGVRTAPLRVYLQLSLDGDVERGGVD 156
Query: 139 PNQTKDFVILC---RQKYQLNVEGLMCIPPAMGNPKPHFYLLS-----------EIAREC 184
+Q + LC L GLM IPP + + F L EI R
Sbjct: 157 VDQPELIDQLCAAVDSAEALEFVGLMGIPPLGADAESAFARLQSEWRRVRQRRKEIGRGQ 216
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ +LS GM+ D E+A+ G+T VR+G+ + G RP
Sbjct: 217 RF-ELSAGMSGDLEMAVRHGSTCVRVGTALMGPRP 250
>gi|310796209|gb|EFQ31670.1| YggS family pyridoxal phosphate enzyme [Glomerella graminicola
M1.001]
Length = 268
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 84/255 (32%), Positives = 123/255 (48%), Gaps = 51/255 (20%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCG---QVIFAENKL 58
+L ++LQ ++++ +A+ A R +V LVAVSK+ + I +AL QV F EN
Sbjct: 17 ALISQLQAVQERV--AAVAAGR---NVRLVAVSKLKPANDI-LALHQATPPQVHFGENYA 70
Query: 59 QE--AKKKWIPLRKEWDVQLRFIGSLQSN---KVSEIVSLFDVIETVSREKTASLLSL-- 111
QE K + +P +W FIG LQS K+++I +LF + +V K A LL+
Sbjct: 71 QELGQKAEMLPRSIQW----HFIGGLQSTHAKKLAKIPNLF-CVSSVDTLKKAQLLNAAR 125
Query: 112 -EMIKQS---------RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR----QKYQLNV 157
E++ L V++QVNT E KSG+ P + V LCR + L +
Sbjct: 126 AELMSSPPDDGGAAPVEPLGVHVQVNTSGEESKSGVAPG--PETVALCRAVETECPALRL 183
Query: 158 EGLMCI-------PPAMGNPKPHFY-------LLSEIARECKLTKLSMGMTRDFELAIAS 203
GLM I N F L++ + +LSMGM+ DFE A+
Sbjct: 184 LGLMTIGAIARSKATTAENENEDFLCLRAQRELVAGELGLERELELSMGMSEDFEGAVRL 243
Query: 204 GATSVRIGSGIFGER 218
G+ VR+GS IFGER
Sbjct: 244 GSGEVRVGSTIFGER 258
>gi|170781772|ref|YP_001710104.1| hypothetical protein CMS_1377 [Clavibacter michiganensis subsp.
sepedonicus]
gi|169156340|emb|CAQ01488.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
sepedonicus]
Length = 213
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 10/204 (4%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A R D V+ + V+K +R + G E++ QEA+ K L V F+G
Sbjct: 12 AGRRPDEVTTIVVTKFQPVSLLRALVDLGVRDLGESRHQEAQGKAAELEGSG-VAWHFVG 70
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
LQ K ++ VI +V R LS + +++R V++QVN + + G+ P
Sbjct: 71 QLQGKKARQVRRYASVIHSVDRPSLIDALSSDE-QETR---VFLQVNLTADEGRGGVPPA 126
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK-----LTKLSMGMTR 195
+ + + V G+M + P G P+ F L I+ + + +S GM+
Sbjct: 127 EAEALAEHAAAAPGIRVLGVMAVAPDDGEPRRAFARLRGISDDVRRILPDARAISAGMSG 186
Query: 196 DFELAIASGATSVRIGSGIFGERP 219
D A+ GAT +RIGS I G+RP
Sbjct: 187 DLREALLEGATHLRIGSAITGKRP 210
>gi|229174567|ref|ZP_04302097.1| hypothetical protein bcere0006_36580 [Bacillus cereus MM3]
gi|228608872|gb|EEK66164.1| hypothetical protein bcere0006_36580 [Bacillus cereus MM3]
Length = 200
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 22/204 (10%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+ LVAV+K V +K + G + EN+ + +K+ + V FIGSLQ+ K
Sbjct: 3 DIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNESFLQKYEHFGSK--VNWHFIGSLQTRK 60
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF---LPVYIQVNTGYEIQKSGIMPNQTK 143
V EI++ D + ++ R LSL Q R + ++QV T E K G+ +T
Sbjct: 61 VKEIINEIDYLHSLDR------LSLAKEIQKRADKKVKCFVQVKTSSEESKQGLAIEETV 114
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKP------HFYLLSEIARECKL-----TKLSMG 192
F+ ++ ++ V GLM + P + +L +E +L +LSMG
Sbjct: 115 SFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKELCMLQTEVQELELLHAPCKELSMG 174
Query: 193 MTRDFELAIASGATSVRIGSGIFG 216
M+ D+ +AI GAT +R+G+ + G
Sbjct: 175 MSNDYTIAIEEGATYIRLGTILVG 198
>gi|57241930|ref|ZP_00369870.1| conserved hypothetical protein TIGR00044 [Campylobacter upsaliensis
RM3195]
gi|57017122|gb|EAL53903.1| conserved hypothetical protein TIGR00044 [Campylobacter upsaliensis
RM3195]
Length = 209
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 104/198 (52%), Gaps = 12/198 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE-WDVQLRFIGSLQSN 85
+V LVA SK VD+ I+ G F EN+++ +K L+ E ++ FIG+LQSN
Sbjct: 12 NVHLVAASKYVDANTIKEFYHKGISEFGENQVKALSEKKELLKDENLTIKWHFIGTLQSN 71
Query: 86 KVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-K 143
K++ ++ ++ ++ + K A + + + L +++N+ E KSGI N+ +
Sbjct: 72 KINLLIKQRPILWQSCNSLKLAKAVDKRL---NYILDTLLEINSASEENKSGIELNKAFE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPK------PHFYLLSEIARECKLTKLSMGMTRDF 197
+++ + + LN++G+MCI + K Y + E ++ SMGM+ DF
Sbjct: 129 EYLQIQEECKNLNLKGVMCIGTHSNDVKKIQKSFEDTYRIYEKLQKHGANICSMGMSSDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
ELA+ G+ +R+GS +F
Sbjct: 189 ELALKCGSNMLRLGSILF 206
>gi|299749232|ref|XP_001838603.2| proline synthetase associated protein [Coprinopsis cinerea
okayama7#130]
gi|298408344|gb|EAU83204.2| proline synthetase associated protein [Coprinopsis cinerea
okayama7#130]
Length = 268
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 108/242 (44%), Gaps = 59/242 (24%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ--EAKKKWIPLRKEWDVQLRFIGSLQS 84
S +LVAVSK + I G + F EN +Q E K K +P D++ FIG+LQS
Sbjct: 32 SPTLVAVSKYKPAGDILACHELGHLDFGENYVQELEEKAKILP----SDIRWHFIGTLQS 87
Query: 85 NKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRFLP--VYIQVNTGYEIQKSGIMPN 140
NK + + ++ I+T+ K A+ L+ + + R P V +QVNT E KSG+ P
Sbjct: 88 NKAKTLALIPNLYSIQTLGSVKAANALN-KALSSDRTTPLRVLLQVNTSGEDAKSGLPPL 146
Query: 141 QTKDFV----------ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK-- 188
+ + V + R+ L +EGLM I G+ + + SE + +
Sbjct: 147 SSSEDVSASELGKLAAHVIRECPALRLEGLMTI----GSLELSIH-ASETEKNADFERLK 201
Query: 189 -------------------------------LSMGMTRDFELAIASGATSVRIGSGIFGE 217
LSMGM+ DFE A+ +G+ +R+GS IFG
Sbjct: 202 QTRDILKAYLETTFGEDGTKQWGQEGTGKLLLSMGMSSDFETALKAGSDIIRVGSSIFGG 261
Query: 218 RP 219
RP
Sbjct: 262 RP 263
>gi|331696625|ref|YP_004332864.1| hypothetical protein Psed_2811 [Pseudonocardia dioxanivorans
CB1190]
gi|326951314|gb|AEA25011.1| protein of unknown function UPF0001 [Pseudonocardia dioxanivorans
CB1190]
Length = 246
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 104/238 (43%), Gaps = 26/238 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L +++I ++ A R V+++AV+K + ++ + + G F EN+ QEA
Sbjct: 8 LARRLAQVRERIASACAAAGRDPGEVAMLAVTKTIPARDVVLLHGLGLRDFGENRAQEAA 67
Query: 63 KKWIPLRK-----------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
K + + + W F+G LQ NK + +E+V + A L
Sbjct: 68 AKVVEVAELLGNPPAGAAPRW----YFVGGLQRNKARLVAPWVTRVESVDSARLADALDA 123
Query: 112 EMIKQSRF------LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP 165
+ + + LPV +Q + + + G+ + L ++GLM + P
Sbjct: 124 QARRAADDGERDGPLPVLLQYSVDGDPGRGGVARDGLLTLASHVAGCAGLRLDGLMAVAP 183
Query: 166 AMGNPKPHFYLLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+P+ F ++ A T LS GM+ D ++AI G+T VR+G+ + GER
Sbjct: 184 LHADPEEAFADVAAAAEVLRAEHPAATVLSAGMSGDLDVAIRHGSTCVRVGTALVGER 241
>gi|163841224|ref|YP_001625629.1| putative cytoplasmic protein [Renibacterium salmoninarum ATCC
33209]
gi|162954700|gb|ABY24215.1| hypothetical cytosolic protein [Renibacterium salmoninarum ATCC
33209]
Length = 246
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 98/236 (41%), Gaps = 19/236 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
LG L KQ+I A+ A D+ L+ V+K + + + G + EN+ QEA
Sbjct: 10 LGANLDAVKQRIA-VAVSASGRVDTPQLIVVTKFHPAADVALLADLGVMEVGENRDQEAA 68
Query: 63 KKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS------LEMIK 115
K L R D+ FIG LQ+NK + + +V R L+ L
Sbjct: 69 AKQAELARAGIDLHWHFIGQLQTNKAKSVARYAYSVHSVDRPALVQALAKAVTAELAAGH 128
Query: 116 QSRFLPVYIQVNTG-YEI-----QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
+S L +QV+ E+ + G P++ L + G+M + P +
Sbjct: 129 RSTTLGCLVQVDLDPLELVPGSSPRGGARPHEVLAIADEIVAADSLELLGVMAVTPLGAD 188
Query: 170 PKPHFYLLSEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
P F L+ I+ R +S GM+ D AI GAT +R+GS + G RP
Sbjct: 189 PDEAFSRLATISAELVNRHPAAKAISAGMSGDLAAAIKHGATHLRVGSDVLGPRPA 244
>gi|294673995|ref|YP_003574611.1| hypothetical protein PRU_1297 [Prevotella ruminicola 23]
gi|294472457|gb|ADE81846.1| conserved hypothetical protein TIGR00044 [Prevotella ruminicola 23]
Length = 224
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 16/206 (7%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V LVA+SK ++ I A GQ +F E+ QE ++K L + D++ FIG LQ+NK
Sbjct: 19 GVRLVAISKYHPNEYIEAAYEEGQRVFGESHEQELRQKHQSLPQ--DIEWHFIGHLQTNK 76
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V I +IE V K ++ + K R + V ++++ E K G+ + ++ +
Sbjct: 77 VKYIAPYVTMIEAVDSLKLLREINKQAEKCGRRIKVLLELHIAEEATKYGLTLDACRELL 136
Query: 147 IL--CRQKYQLNVEGLMC----------IPPAMGNPKPHFYLLSE--IARECKLTKLSMG 192
R+ + + GLM I M + F + A + + S G
Sbjct: 137 AAGEWREMQHVQICGLMMMASFVNDEAQIRQEMQTARDFFDEVKAQYFADDDAFCERSWG 196
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D+ +A+ +G+T +R+G+ IFG R
Sbjct: 197 MSDDYPIALQTGSTMIRVGTKIFGPR 222
>gi|332671192|ref|YP_004454200.1| alanine racemase domain-containing protein [Cellulomonas fimi ATCC
484]
gi|332340230|gb|AEE46813.1| alanine racemase domain protein [Cellulomonas fimi ATCC 484]
Length = 256
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 86/184 (46%), Gaps = 15/184 (8%)
Query: 51 VIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS 110
V+ EN++QE K P + IG LQSNKV+ + +E+V+ A LS
Sbjct: 75 VLVGENRVQELVAKG-PDLADLRPTTHLIGPLQSNKVNAALRWVSCVESVTSLDLARRLS 133
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAM 167
+ L V +QVN E+ K G+ D + + + G M + P +
Sbjct: 134 DRCADRPVALDVLVQVNVSGEVTKHGVPLTAAADLALAVAALPGVRLAGFMTVGLRSPDV 193
Query: 168 GNPKPHFYLLSEIARECKLT----------KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ L+ + R+ LT +LSMGM+ D E+A+A GAT VR+GS +FG+
Sbjct: 194 AAVGAGYASLAAL-RDEVLTSGAPGTQGARELSMGMSGDLEVAVAHGATLVRVGSAVFGD 252
Query: 218 RPCQ 221
RP +
Sbjct: 253 RPAR 256
>gi|152992349|ref|YP_001358070.1| hypothetical protein SUN_0755 [Sulfurovum sp. NBC37-1]
gi|151424210|dbj|BAF71713.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 227
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 98/196 (50%), Gaps = 9/196 (4%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V LVAV K + + I GQ F EN++Q+ K + L +E ++ IG LQ NK+
Sbjct: 32 VQLVAVGKYTEVENIVTLYKLGQRAFGENQVQQLKARMAAL-EELPLEWHMIGRLQKNKI 90
Query: 88 SEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
+ ++ L +++++ A L+ ++ + + +Q+N+ E KSG+ P + +D
Sbjct: 91 NNLIDLRPSLMQSLDSLSLAEELNKKLDAKEAKMNCLLQINSAREETKSGVTPEEAQDIY 150
Query: 147 ILCRQKY-QLNVEGLMCIPPAMGNPK---PHFYLLSEIARECK---LTKLSMGMTRDFEL 199
+ ++ + ++G+M I + K F I + + T SMGM+ D+ L
Sbjct: 151 LQIKESCPNITLKGVMTIGAHTDDTKLIQQSFETTQSIYEKLEKEGATVCSMGMSSDYAL 210
Query: 200 AIASGATSVRIGSGIF 215
AI G+ +R+GS +F
Sbjct: 211 AIKCGSNLIRVGSALF 226
>gi|320546324|ref|ZP_08040643.1| cell division protein YlmE [Streptococcus equinus ATCC 9812]
gi|320449045|gb|EFW89769.1| cell division protein YlmE [Streptococcus equinus ATCC 9812]
Length = 224
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 108/223 (48%), Gaps = 18/223 (8%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
NK VF+Q + N+ A R ++SV ++AV+K VDS + G EN++ K
Sbjct: 7 NKDLVFEQ-VANATKAANRSQESVKVIAVTKYVDSGVAARLIDTGIEHIGENRVDMFLDK 65
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF-LPVY 123
+ L K+ ++ IG+LQ KV +++ D + K L+ E+ K++ + +
Sbjct: 66 YEAL-KDKNLTWHLIGTLQRRKVKNVINYVDYFHALDSVK----LAAEIQKRAEHPIKCF 120
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+Q+N E K G ++ + + ++ + GLM + P + F ++
Sbjct: 121 LQINISEEESKHGFKVSEIDEALEQISNFDKVEIVGLMTMAPKNASDSEIDDIFGKADQL 180
Query: 181 ARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + T+LSMGM+ DF +AI +GAT VRIGS F
Sbjct: 181 RQDLQERHLPHMPFTELSMGMSGDFPIAIRNGATFVRIGSSFF 223
>gi|229140549|ref|ZP_04269104.1| hypothetical protein bcere0013_36480 [Bacillus cereus BDRD-ST26]
gi|229198012|ref|ZP_04324726.1| hypothetical protein bcere0001_35470 [Bacillus cereus m1293]
gi|228585491|gb|EEK43595.1| hypothetical protein bcere0001_35470 [Bacillus cereus m1293]
gi|228643110|gb|EEK99386.1| hypothetical protein bcere0013_36480 [Bacillus cereus BDRD-ST26]
Length = 200
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 22/204 (10%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+ LVAV+K V +K + G + EN+ + +K+ + V FIGSLQ+ K
Sbjct: 3 DIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSK--VNWHFIGSLQTRK 60
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF---LPVYIQVNTGYEIQKSGIMPNQTK 143
V EI++ D + ++ R LSL Q R + +IQV T E K G+ +T
Sbjct: 61 VKEIINEIDYLHSLDR------LSLAKEIQKRADKKVKCFIQVKTSSEESKQGLAIEETV 114
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKP------HFYLLSEIARECKL-----TKLSMG 192
F+ ++ ++ V GLM + P + +L +E +L +LSMG
Sbjct: 115 SFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKTLRMLQTEVQELELLHAPCKELSMG 174
Query: 193 MTRDFELAIASGATSVRIGSGIFG 216
M+ D+ +AI GAT +R+G+ + G
Sbjct: 175 MSNDYTIAIEEGATYIRLGTILVG 198
>gi|319957195|ref|YP_004168458.1| alanine racemase domain protein [Nitratifractor salsuginis DSM
16511]
gi|319419599|gb|ADV46709.1| alanine racemase domain protein [Nitratifractor salsuginis DSM
16511]
Length = 232
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 108/233 (46%), Gaps = 28/233 (12%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L L+ Q+IE + I V +V VSK + I GQ F EN++Q+
Sbjct: 11 TLARNLEAVIQRIEAARIKVD-EHHIVKMVVVSKYTAIENIATLYDLGQRAFGENQVQQL 69
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIKQ 116
+++ L EW IG LQ NK+++++ L F + S + +L K+
Sbjct: 70 EERVHALEDLPLEW----HMIGRLQKNKINKLIDLDPFLLQSLDSLDLAEALDKRLEAKE 125
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGNP---KP 172
R + +Q+N+ E K+G+ P D ++++ ++++ G+M I + +
Sbjct: 126 KR-MECLLQINSAREESKAGVAPEAAVDVYREIKERFSRIDLRGVMTIGAHTDDKATVRK 184
Query: 173 HFY--------LLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
F L SE A C SMGM+ DFELAI G+ VRIGS +F E
Sbjct: 185 SFETTRRIFDELQSEGAEIC-----SMGMSGDFELAIECGSNMVRIGSALFAE 232
>gi|87311294|ref|ZP_01093416.1| hypothetical protein DSM3645_27246 [Blastopirellula marina DSM
3645]
gi|87286034|gb|EAQ77946.1| hypothetical protein DSM3645_27246 [Blastopirellula marina DSM
3645]
Length = 235
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 98/233 (42%), Gaps = 31/233 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-- 60
L L + KI +A A R D V L+AV+K VD + G E++ Q+
Sbjct: 9 LAENLAEVRGKIAAAADRAGRSSDDVRLIAVTKYVDLETTEALFELGCCDLGESRPQQLW 68
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ---- 116
A+ + R V+ IG LQ+NK + + SL ++K
Sbjct: 69 ARAEQFAARP---VRWHMIGHLQTNKAKRTAPVLSWLHAGD--------SLRLLKAVDAA 117
Query: 117 ---SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---P 170
R + +++N + K GI P+ + + L + GLM + G
Sbjct: 118 ATADRRVQALLEINISGDAAKHGIAPDDAPRVLEEAAKLPHLEIRGLMGMAALAGGVDVA 177
Query: 171 KPHFYLLSEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ +F L E+ +LT+LSMGM+ D++ AI GAT VR+GS +F
Sbjct: 178 RANFAALRELRDRLAADAPDNIELTELSMGMSGDYQAAIEEGATMVRVGSSLF 230
>gi|126435840|ref|YP_001071531.1| alanine racemase domain-containing protein [Mycobacterium sp. JLS]
gi|126235640|gb|ABN99040.1| alanine racemase domain protein [Mycobacterium sp. JLS]
Length = 254
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 98/215 (45%), Gaps = 24/215 (11%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW---DVQLRFIGSLQS 84
++L+ V+K + IR+ G FAE++ QEA KK L E+ V+ +G +Q
Sbjct: 37 IALLPVTKFFPASDIRILYGLGCREFAESREQEASKKAAELAGEFAGDPVRWHMVGRIQR 96
Query: 85 NKVSEIVSLFDVIETVSREKTASLL------SLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
NK + +V K + L +L ++ L VY+Q++ ++++ G+
Sbjct: 97 NKARAVARWAYAAHSVDSAKLIAALDRGAGDALGDGVRTAPLRVYLQLSLDGDVERGGVD 156
Query: 139 PNQTKDFVILC---RQKYQLNVEGLMCIPPAMGNPKPHFYLLS-----------EIAREC 184
+Q + LC L GLM IPP + F L EI R
Sbjct: 157 VDQPELIDQLCAAVDSAEALEFVGLMGIPPLGADAGSAFARLQSEWRRVRQRRKEIGRGQ 216
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ +LS GM+ D E+A+ G+T VR+G+ + G RP
Sbjct: 217 RF-ELSAGMSGDLEMAVRHGSTCVRVGTALMGPRP 250
>gi|86609204|ref|YP_477966.1| hypothetical protein CYB_1746 [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557746|gb|ABD02703.1| conserved hypothetical protein TIGR00044 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 227
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 110/222 (49%), Gaps = 16/222 (7%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67
Q+ +I+ AI A+ P D V ++AVSK + IR A G F E+++QEA K
Sbjct: 6 QLIHSRIQ--AIRAQIP-DHVEIMAVSKGYSADHIRAAYRAGIRHFGESRVQEAAVKQGQ 62
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
L+ + IG LQ+NKV + F I++V + A L++ + + + +QV
Sbjct: 63 LQDLTGIVWHLIGHLQTNKVKPALKQFAWIDSVDSLRLAKLINQKAWELHLTPKLCLQVK 122
Query: 128 TGYEIQKSG-IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL---LSEIA-- 181
+ K G ++P+ + L Q Q+ + GLM I P + + L L+E+A
Sbjct: 123 LAPDPNKFGWLIPDLLQSLPEL-NQLLQVQIVGLMTILPLGLSSEAALDLFRKLAELADY 181
Query: 182 ------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ LSMGM+ D+ LA+A+G+ +R+G +F +
Sbjct: 182 IQRSGYEHLQVHTLSMGMSDDYLLAVAAGSNLIRLGRALFAD 223
>gi|317489830|ref|ZP_07948327.1| alanine racemase domain-containing protein [Eggerthella sp.
1_3_56FAA]
gi|316911079|gb|EFV32691.1| alanine racemase domain-containing protein [Eggerthella sp.
1_3_56FAA]
Length = 234
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 21/194 (10%)
Query: 39 SKKIRVALSCGQVIFAENKLQ--EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV 96
+ ++ A+ G F EN+ E K+ P ++ W FIG++QS ++ +IV +
Sbjct: 39 ADEVAEAIEAGAHDFGENRPDSLEGKRARFP-QQTW----HFIGNIQSRRIPDIVRDAAL 93
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156
+ ++ +++ + V ++VN E KSG+ P++ + C +
Sbjct: 94 VHSLYQQRHVPKFDAAAAASGKVQDVLLEVNVSGEASKSGLAPSEVAGMLEYCAGFPHVR 153
Query: 157 VEGLMCIPPAMGNPKPHFYLLSEIAR-------------ECKLTKLSMGMTRDFELAIAS 203
V GLM + P G+ + +++AR +LSMGM+ D+ AIA
Sbjct: 154 VRGLMTMAP-QGDAQRARACFADLARLRDKVRLGLDGEQAAVFDELSMGMSEDWHEAIAE 212
Query: 204 GATSVRIGSGIFGE 217
GAT VRIG +F +
Sbjct: 213 GATIVRIGRALFDD 226
>gi|193785623|dbj|BAG51058.1| unnamed protein product [Homo sapiens]
Length = 235
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 95/190 (50%), Gaps = 28/190 (14%)
Query: 53 FAENKLQE-----AKKKWIPLRKEWDVQLRFIGSLQS---NKVSEIVSLFDVIETVSREK 104
F EN +QE + K + L E ++ FIG LQ NK+ + +LF ++ETV K
Sbjct: 25 FGENYVQELLEKASNPKILSLCPE--IKWHFIGHLQKQNVNKLMAVPNLF-MLETVDSVK 81
Query: 105 TASLL--SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLM 161
A + S + L V +Q+NT E K G+ P++T V K L GLM
Sbjct: 82 LADKVNSSWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLM 141
Query: 162 CIPPAMGN-----PKPHFYLLSEIARE-CK-------LTKLSMGMTRDFELAIASGATSV 208
I + G+ P P F LL + E CK +LSMGM+ DF+ A+ G+T+V
Sbjct: 142 TIG-SFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNV 200
Query: 209 RIGSGIFGER 218
RIGS IFGER
Sbjct: 201 RIGSTIFGER 210
>gi|171778698|ref|ZP_02919794.1| hypothetical protein STRINF_00646 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282655|gb|EDT48079.1| hypothetical protein STRINF_00646 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 224
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 18/223 (8%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
NK VF+Q + + A R ++SV ++AV+K VDS + G EN++ K
Sbjct: 7 NKDLVFEQ-VAQATKAANRSQESVKIIAVTKYVDSGVAARLIDTGIEHIGENRVDMFLDK 65
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF-LPVY 123
+ L K+ ++ IG+LQ KV +++ D + K L+ E+ K++ + +
Sbjct: 66 YEAL-KDKNLTWHLIGTLQRRKVKNVINYVDYFHALDSVK----LAAEIQKRAEHPIKCF 120
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVN E K G ++ + + ++ + GLM + P + F ++
Sbjct: 121 LQVNISEEESKHGFKVSEIDEALAEISDFDKVEIVGLMTMAPKNASESEIDDIFGKADKL 180
Query: 181 ARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+E + T+LSMGM+ DF +AI +GAT VRIGS F
Sbjct: 181 RQELQARQLAHMPFTELSMGMSGDFPIAIRNGATFVRIGSSFF 223
>gi|300933349|ref|ZP_07148605.1| hypothetical protein CresD4_04720 [Corynebacterium resistens DSM
45100]
Length = 230
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 89/205 (43%), Gaps = 13/205 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
L+ ++K + I V G EN+ QEAK K L + + +G +Q+ K
Sbjct: 27 GADLLPITKFHPVEAIEVLAEFGVGAVGENREQEAKAKHDVLAGRPAIHM--VGQIQTKK 84
Query: 87 VSEIVSLFDVIETVSREK------TASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+ + + TV K + L+LE + LPV +Q + + Q+ G
Sbjct: 85 ANSVARWAAAVHTVDSSKLLHALERGAGLALERGDRHEKLPVLLQWSADGDPQRGGAGGA 144
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY----LLSEIA-RECKLTKLSMGMTR 195
Q + + GLM +PP +P F LL IA R + S GM++
Sbjct: 145 DIDALADEVAQCQHVELRGLMTVPPLDSDPALVFSKGRKLLDAIADRVVGVPVYSAGMSQ 204
Query: 196 DFELAIASGATSVRIGSGIFGERPC 220
D E+AIA G+T VR+G+ I G RP
Sbjct: 205 DLEIAIAEGSTLVRVGTDIMGPRPV 229
>gi|325830003|ref|ZP_08163461.1| pyridoxal phosphate enzyme, YggS family [Eggerthella sp. HGA1]
gi|325488170|gb|EGC90607.1| pyridoxal phosphate enzyme, YggS family [Eggerthella sp. HGA1]
Length = 234
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 21/194 (10%)
Query: 39 SKKIRVALSCGQVIFAENKLQ--EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV 96
+ ++ A+ G F EN+ E K+ P ++ W FIG++QS ++ +IV +
Sbjct: 39 ADEVAEAIEAGAHDFGENRPDSLEGKRARFP-QQTW----HFIGNIQSRRIPDIVRDAAL 93
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156
+ ++ +++ + V ++VN E KSG+ P++ + C +
Sbjct: 94 VHSLYQQRHVPKFDAAAAASGKVQDVLLEVNVSGEASKSGLAPSEVAGMLEYCAGFPHVR 153
Query: 157 VEGLMCIPPAMGNPKPHFYLLSEIAR-------------ECKLTKLSMGMTRDFELAIAS 203
V GLM + P G+ + +++AR +LSMGM+ D+ AIA
Sbjct: 154 VRGLMTMAP-QGDAQRARACFADLARLRDKVRLGLDGEQAAVFDELSMGMSEDWHEAIAE 212
Query: 204 GATSVRIGSGIFGE 217
GAT VRIG +F +
Sbjct: 213 GATIVRIGRALFDD 226
>gi|119583766|gb|EAW63362.1| proline synthetase co-transcribed homolog (bacterial), isoform
CRA_c [Homo sapiens]
Length = 236
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 95/190 (50%), Gaps = 28/190 (14%)
Query: 53 FAENKLQE-----AKKKWIPLRKEWDVQLRFIGSLQS---NKVSEIVSLFDVIETVSREK 104
F EN +QE + K + L E ++ FIG LQ NK+ + +LF ++ETV K
Sbjct: 26 FGENYVQELLEKASNPKILSLCPE--IKWHFIGHLQKQNVNKLMAVPNLF-MLETVDSVK 82
Query: 105 TASLL--SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLM 161
A + S + L V +Q+NT E K G+ P++T V K L GLM
Sbjct: 83 LADKVNSSWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLM 142
Query: 162 CIPPAMGN-----PKPHFYLLSEIARE-CK-------LTKLSMGMTRDFELAIASGATSV 208
I + G+ P P F LL + E CK +LSMGM+ DF+ A+ G+T+V
Sbjct: 143 TIG-SFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNV 201
Query: 209 RIGSGIFGER 218
RIGS IFGER
Sbjct: 202 RIGSTIFGER 211
>gi|283953914|ref|ZP_06371443.1| hypothetical protein C414_000040016 [Campylobacter jejuni subsp.
jejuni 414]
gi|283794519|gb|EFC33259.1| hypothetical protein C414_000040016 [Campylobacter jejuni subsp.
jejuni 414]
Length = 210
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 105/198 (53%), Gaps = 12/198 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-AKKKWIPLRKEWDVQLRFIGSLQSN 85
++ L+A SK VD+ + + G V F EN++Q A+KK K+ +++ FIG+LQSN
Sbjct: 12 NIRLIAASKYVDASMVEKLFNQGVVEFGENQVQALAQKKENLNEKKLNIKWHFIGTLQSN 71
Query: 86 KVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-K 143
K++ ++ ++ + + K A + + L +++N+ E KSG+ PNQ +
Sbjct: 72 KINLLIKQKPILWHSCNGIKIAKAMDKRL---DYKLNTLLEINSANENSKSGLDPNQAIE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPK------PHFYLLSEIARECKLTKLSMGMTRDF 197
+++ + + LN+ G+M I + + + + EI ++ SMGM+ DF
Sbjct: 129 EYLQIQEECPNLNLCGVMSIGSHSQDKENIIKSFETTFKIYEILQKHGAKICSMGMSNDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
E+AI G+ VR+GS +F
Sbjct: 189 EIAIKCGSNLVRLGSILF 206
>gi|209875933|ref|XP_002139409.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209555015|gb|EEA05060.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
Length = 243
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 86/186 (46%), Gaps = 27/186 (14%)
Query: 53 FAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD--VIETVSREKTASLLS 110
F EN ++E K R D+ FIG LQ NKV ++++ + +IE++ + A L+
Sbjct: 63 FGENYVKELVLK--SSRLPEDIMWHFIGHLQRNKVRSLLTVKNLYIIESLDSIELAYLIQ 120
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY------QLNVEGLMCIP 164
+ R++ VYIQ+ T E K+GI ++K V KY +LN G M I
Sbjct: 121 KICEEMKRYVNVYIQIKTSTETTKTGINIEESKKLV-----KYVLDHCPRLNFLGFMTIA 175
Query: 165 PAMGNPKPHFY------------LLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGS 212
N + ++E A LSMGM+ DFE+AI +RIGS
Sbjct: 176 DNDKNKCSECFSKLVDLRARTLNWMTEQAYSTARCDLSMGMSDDFEIAITHKTNEIRIGS 235
Query: 213 GIFGER 218
IFG R
Sbjct: 236 AIFGLR 241
>gi|153951807|ref|YP_001398337.1| hypothetical protein JJD26997_1287 [Campylobacter jejuni subsp.
doylei 269.97]
gi|152939253|gb|ABS43994.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. doylei 269.97]
Length = 210
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 104/198 (52%), Gaps = 12/198 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-AKKKWIPLRKEWDVQLRFIGSLQSN 85
++ LVA SK VD+ I G V F EN++Q A+KK K+ +++ FIG+LQSN
Sbjct: 12 NIRLVAASKYVDASIIEKLFDQGIVEFGENQVQALAQKKENLDEKKLNIKWHFIGTLQSN 71
Query: 86 KVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-K 143
K++ ++ ++ + + K A + + L +++N+ E KSG+ PNQ +
Sbjct: 72 KINLLIKQKPILWHSCNGIKIAKAMDKRL---DYKLNTLLEINSANENSKSGLNPNQAIE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHF------YLLSEIARECKLTKLSMGMTRDF 197
+++ + + LN+ G+M I + + + + EI ++ SMGM+ DF
Sbjct: 129 EYLQIQEECPNLNLCGVMSIGSHSQDRESIIKSFETTFKIYEILQKHGAKICSMGMSNDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
E+AI G+ VR+GS +F
Sbjct: 189 EIAIKCGSNLVRLGSILF 206
>gi|228916538|ref|ZP_04080104.1| hypothetical protein bthur0012_37530 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228928949|ref|ZP_04091981.1| hypothetical protein bthur0010_36410 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935216|ref|ZP_04098042.1| hypothetical protein bthur0009_36680 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228947620|ref|ZP_04109910.1| hypothetical protein bthur0007_37480 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229123414|ref|ZP_04252618.1| hypothetical protein bcere0016_37030 [Bacillus cereus 95/8201]
gi|229186141|ref|ZP_04313310.1| hypothetical protein bcere0004_36880 [Bacillus cereus BGSC 6E1]
gi|228597317|gb|EEK54968.1| hypothetical protein bcere0004_36880 [Bacillus cereus BGSC 6E1]
gi|228660190|gb|EEL15826.1| hypothetical protein bcere0016_37030 [Bacillus cereus 95/8201]
gi|228812140|gb|EEM58471.1| hypothetical protein bthur0007_37480 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228824381|gb|EEM70187.1| hypothetical protein bthur0009_36680 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830756|gb|EEM76361.1| hypothetical protein bthur0010_36410 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228843117|gb|EEM88199.1| hypothetical protein bthur0012_37530 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 200
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 99/206 (48%), Gaps = 26/206 (12%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+ LVAV+K V +K + G + EN+ + +K+ + V FIGSLQ+ K
Sbjct: 3 DIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSK--VNWHFIGSLQTRK 60
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF---LPVYIQVNTGYEIQKSGIMPNQTK 143
V EI++ D + ++ R LSL Q R + +IQV T E K G+ +T
Sbjct: 61 VKEIINEIDYLHSLDR------LSLAKEIQKRANKKVKCFIQVKTSSEESKQGLAIEETV 114
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARE----------CKLTKLS 190
F+ ++ ++ V GLM + P + F L + +E CK +LS
Sbjct: 115 SFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQKEVQGLELLHAPCK--ELS 172
Query: 191 MGMTRDFELAIASGATSVRIGSGIFG 216
MGM+ D+ +AI GAT +R+G+ + G
Sbjct: 173 MGMSNDYTIAIEEGATYIRLGTILVG 198
>gi|315638347|ref|ZP_07893526.1| proline synthetase associated protein [Campylobacter upsaliensis
JV21]
gi|315481558|gb|EFU72183.1| proline synthetase associated protein [Campylobacter upsaliensis
JV21]
Length = 209
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 105/198 (53%), Gaps = 12/198 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE-WDVQLRFIGSLQSN 85
+V LVA SK V++ I+ G F EN+++ +K L+ E ++ FIG+LQSN
Sbjct: 12 NVRLVAASKYVNANTIKEFYHKGISEFGENQVKALSEKKELLKDENLTIKWHFIGTLQSN 71
Query: 86 KVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-K 143
K++ ++ ++ ++ + K A + + + L +++N+ +E KSGI N+ +
Sbjct: 72 KINLLIKQRPILWQSCNSLKLAKAVDKRL---NYTLDTLLEINSAFEENKSGIELNKAFE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPK------PHFYLLSEIARECKLTKLSMGMTRDF 197
+++ + + LN++G+MCI + K Y + E ++ SMGM+ DF
Sbjct: 129 EYLQIQEECKNLNLKGVMCIGTHSDDVKKIQKSFEDTYRIYEKLQKHGANICSMGMSNDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
ELA+ G+ +R+GS +F
Sbjct: 189 ELALKCGSNMLRLGSILF 206
>gi|326932746|ref|XP_003212474.1| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like [Meleagris gallopavo]
Length = 215
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 98/187 (52%), Gaps = 22/187 (11%)
Query: 53 FAENKLQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTAS 107
F EN +QE +K R +++ FIG LQ + V++++++ ++ +ETV K A
Sbjct: 3 FGENYVQELLEKASDSRILSSCPEIKWHFIGHLQKSNVNKLIAVPNLFMLETVDSVKLAD 62
Query: 108 LLSLEMIKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIP 164
++ K+ + L V +QVNT E K G+ P T V K L GLM I
Sbjct: 63 RVNSSWQKKGSPQKLKVMVQVNTSGEDSKHGLPPRDTAAAVEHVINKCPSLEFVGLMTIG 122
Query: 165 PAMGN-----PKPHFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRIG 211
++G+ P P F +L + +E KL +LSMGM+ DF+ AI G+T+VRIG
Sbjct: 123 -SIGHDLSKGPNPDFQVLLSLRQEVCEKLNLPIEKVELSMGMSTDFQHAIEVGSTNVRIG 181
Query: 212 SGIFGER 218
S IFGER
Sbjct: 182 STIFGER 188
>gi|325977745|ref|YP_004287461.1| putative pyridoxal phosphate-dependent enzyme [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|325177673|emb|CBZ47717.1| Predicted pyridoxal phosphate-dependent enzyme [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
Length = 224
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 17/205 (8%)
Query: 23 RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
R K+SV+++AV+K VDS + G EN++ K+ L K+ + IGSL
Sbjct: 24 RSKESVNVIAVTKYVDSGVAARLIDTGIEHIGENRVDMFLDKYEAL-KDRKLTWHLIGSL 82
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQVNTGYEIQKSGIMPNQ 141
Q KV +++ D + K AS E+ K++ + ++QVN E K G ++
Sbjct: 83 QRRKVKNVINFVDYFHALDSVKLAS----EIQKRAEHTIKCFLQVNISEEESKHGFKVSE 138
Query: 142 TKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECK--------LTKLS 190
+ + + ++ + GLM + P + + F +++ +E + T+LS
Sbjct: 139 IDEALAAISEFDKVEIVGLMTMAPKEASESEIEEIFGKANQLRQELQARQLPHMPFTELS 198
Query: 191 MGMTRDFELAIASGATSVRIGSGIF 215
MGM+ D+++AI +GAT VRIG+ F
Sbjct: 199 MGMSGDYKIAIRNGATFVRIGTSFF 223
>gi|27262184|gb|AAN87373.1| hypothetical cytosolic protein [Heliobacillus mobilis]
Length = 182
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 11/150 (7%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G+LQ+NKV I ++I ++ R A + R + ++VN E K G+
Sbjct: 32 GTLQTNKVKYIYDKVELIHSLDRLSLAEAIHKHAGLLQRPIDCLVEVNVSGEESKHGVPK 91
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI------ARECKLTK----- 188
+ F+ +++ GLM + P + N + ++ E+ RE L +
Sbjct: 92 QELVPFLRSLSSLDGVHIRGLMTMAPFVDNSEEIRWVFRELRQLSLEVRELNLARVEMQH 151
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGMT D+E+A+ GAT VR+GSG+FGER
Sbjct: 152 LSMGMTNDYEVAVEEGATIVRVGSGLFGER 181
>gi|257126827|ref|YP_003164941.1| alanine racemase [Leptotrichia buccalis C-1013-b]
gi|257050766|gb|ACV39950.1| alanine racemase domain protein [Leptotrichia buccalis C-1013-b]
Length = 227
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 111/225 (49%), Gaps = 25/225 (11%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67
Q +++ +EN + P + V ++ VSK ++ ++ + + G F EN+ Q + K
Sbjct: 10 QNYEKILENVKKYSPYP-EKVKILFVSKYLNVEEHKAVIDMGYDYFGENRAQLYRDKLNE 68
Query: 68 LRKE------WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
E WD FIG LQ NK+ I++ +++ ++ + ++ + I+ ++ +
Sbjct: 69 FSDEKYKNIKWD----FIGRLQKNKIKYIINSVNLVHSIDSYQLLEEINKKAIENNKTIS 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN---VEGLMCIPPAMGNP---KPHFY 175
IQ+N E K+G+ +DF + + ++ + G M + P + +F
Sbjct: 125 GLIQINVSREESKTGVY---IEDFKKDSEKYFSMSNVKIAGFMTMAPFDASEYEIDNYFS 181
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ E+ E + +T+LSMGM+ D+ A+ +GAT +RIGS +F
Sbjct: 182 KMRELKEEYEKKYDYITELSMGMSNDYIEALKNGATIIRIGSKLF 226
>gi|300784861|ref|YP_003765152.1| pyridoxal-5'-phosphate dependent enzyme class III [Amycolatopsis
mediterranei U32]
gi|299794375|gb|ADJ44750.1| pyridoxal-5'-phosphate dependent enzyme class III [Amycolatopsis
mediterranei U32]
Length = 237
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 19/207 (9%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA--KKKWIPLRKEWDVQLRFIGSLQ 83
D V L+A++K + + + G EN+ QEA K + R W +G LQ
Sbjct: 31 DEVKLIAITKTFPASDVALLAELGVTDVGENRDQEAGPKAAEVAARLRW----HMVGRLQ 86
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF-------LPVYIQVNTGYEIQKSG 136
NK +V +++V + A L+ + + R+ L V IQ + + + G
Sbjct: 87 RNKARSVVGWAHEVQSVDSARLADALA-KAVHTERYSGKREEPLDVLIQASLDDDPGRGG 145
Query: 137 IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK-----LTKLSM 191
+ Q +L + GLM + P +P F L+ + +S
Sbjct: 146 CPLAELPALADHIAQSGELRLRGLMAVAPLGADPAAAFERLARAGESLRKDHPNAADVSA 205
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D E AI G+TSVR+G+ + G R
Sbjct: 206 GMSHDLEQAITHGSTSVRVGTALLGGR 232
>gi|229152098|ref|ZP_04280293.1| hypothetical protein bcere0011_36380 [Bacillus cereus m1550]
gi|228631447|gb|EEK88081.1| hypothetical protein bcere0011_36380 [Bacillus cereus m1550]
Length = 200
Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 22/204 (10%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+ LVAV+K V +K + + G + EN+ + +K+ + V FIGSLQ+ K
Sbjct: 3 DIKLVAVTKTVGIEKTKEVIEAGIIDLGENRNEGFLQKYEHFGSK--VNWHFIGSLQTRK 60
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF---LPVYIQVNTGYEIQKSGIMPNQTK 143
V EI++ D + ++ R LSL Q R + +IQV T E K G+ +
Sbjct: 61 VKEIINEIDYLHSLDR------LSLAKEIQKRADKKVKCFIQVKTSSEESKQGLAIEEVV 114
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKP------HFYLLSEIARECKL-----TKLSMG 192
F+ ++ ++ V GLM + P + +L +E +L +LSMG
Sbjct: 115 SFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTEVQELELLHAPCKELSMG 174
Query: 193 MTRDFELAIASGATSVRIGSGIFG 216
M+ D+ +AI GAT +R+G+ + G
Sbjct: 175 MSNDYTIAIEEGATYIRLGTILVG 198
>gi|228954177|ref|ZP_04116205.1| hypothetical protein bthur0006_35490 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229180176|ref|ZP_04307520.1| hypothetical protein bcere0005_35220 [Bacillus cereus 172560W]
gi|229192070|ref|ZP_04319039.1| hypothetical protein bcere0002_37260 [Bacillus cereus ATCC 10876]
gi|228591396|gb|EEK49246.1| hypothetical protein bcere0002_37260 [Bacillus cereus ATCC 10876]
gi|228603385|gb|EEK60862.1| hypothetical protein bcere0005_35220 [Bacillus cereus 172560W]
gi|228805497|gb|EEM52088.1| hypothetical protein bthur0006_35490 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
Length = 200
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 22/204 (10%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+ LVAV+K V +K + G + EN+ + +K+ + V FIGSLQ+ K
Sbjct: 3 DIKLVAVTKTVGIEKTNEVIEAGVIDLGENRNEGFLQKYEHFGSK--VNWHFIGSLQTRK 60
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF---LPVYIQVNTGYEIQKSGIMPNQTK 143
V EI++ D + ++ R LSL Q R + +IQV T E K G+ +
Sbjct: 61 VKEIINEIDYLHSLDR------LSLAKEIQKRADKKVKCFIQVKTSSEESKQGLAIEEVV 114
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKP------HFYLLSEIARECKL-----TKLSMG 192
F+ ++ ++ V GLM + P + +L +E +L +LSMG
Sbjct: 115 SFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTEVQELELLHAPCKELSMG 174
Query: 193 MTRDFELAIASGATSVRIGSGIFG 216
M+ D+++AI GAT +R+G+ + G
Sbjct: 175 MSNDYKIAIEEGATYIRLGTILVG 198
>gi|227876863|ref|ZP_03994972.1| alanine racemase domain protein [Mobiluncus mulieris ATCC 35243]
gi|227842760|gb|EEJ52960.1| alanine racemase domain protein [Mobiluncus mulieris ATCC 35243]
Length = 281
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 110/266 (41%), Gaps = 54/266 (20%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L ++++ +A + R V ++ VSKM I+ A++ G F EN+ Q+ K
Sbjct: 7 RLVGIQERVAAAARASGREPRDVRILPVSKMHPISMIQAAMAAGAREFGENRPQDLAAKA 66
Query: 66 IPLR----------------------------KEWDVQLR--------------FIGSLQ 83
L + D+ L IG+LQ
Sbjct: 67 QELGANLGQSGSGNTGVLAGLDGVSAQPGIGGRGADLGLAPRESETKPDVPRWVMIGNLQ 126
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NK IV+ ++++ + A LS + + R L V +QVN E K G+ P
Sbjct: 127 RNKAKLIVAYAAELQSLDSLRLAETLSRLLGEAGRELDVMVQVNISGEAVKHGVEPGVAL 186
Query: 144 DFVILCRQKYQLNVEGLMCIPPAM---GNPKPH--FYLLSEIARECKL------TKLSMG 192
DF L + G M + + G H F L I R+ + + LSMG
Sbjct: 187 DFAGRVAALPGLRLTGFMGVAAPLSVVGESGVHEAFARLRAI-RDAAVVSIPEASGLSMG 245
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ DFE+AI G+T VR+GSG+FG+R
Sbjct: 246 MSGDFEIAIVEGSTCVRLGSGLFGQR 271
>gi|188036273|pdb|3CPG|A Chain A, Crystal Structure Of An Unknown Protein From
Bifidobacterium Adolescentis
Length = 282
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 94/232 (40%), Gaps = 35/232 (15%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-------- 72
A R SV L+A +K D +I A+ G EN+ QE K L +
Sbjct: 43 AGREAGSVRLLAATKTRDIGEIXAAIDAGVRXIGENRPQEVTAKAEGLARRCAERGFSLG 102
Query: 73 -----------DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ IG LQSNK+ +++ + D IE+V A +S + + +
Sbjct: 103 VAGAAPDAAAEHIPFHLIGQLQSNKIGKVLPVVDTIESVDSIDLAEKISRRAVARGITVG 162
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK------PHFY 175
V ++VN E KSG P + ++GL I + + H
Sbjct: 163 VLLEVNESGEESKSGCDPAHAIRIAQKIGTLDGIELQGLXTIGAHVHDETVIRRGFSHLR 222
Query: 176 LLSEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ C+ +LS G T D ELAIA G+T VR+G+ IFGER
Sbjct: 223 KTRDLILASGEPGTDRCR--ELSXGXTGDXELAIAEGSTIVRVGTAIFGERA 272
>gi|296221991|ref|XP_002756996.1| PREDICTED: proline synthetase co-transcribed bacterial homolog
protein-like [Callithrix jacchus]
Length = 236
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 96/190 (50%), Gaps = 28/190 (14%)
Query: 53 FAENKLQE-----AKKKWIPLRKEWDVQLRFIGSLQS---NKVSEIVSLFDVIETVSREK 104
F EN +QE + K + L E ++ FIG LQ NK+ + +LF ++ETV K
Sbjct: 26 FGENYVQELLEKASNPKILSLCPE--IKWHFIGHLQKQNVNKLMAVPNLF-MLETVDSVK 82
Query: 105 TASLLSLEMIKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLM 161
A ++ K+ L V +Q+NT E K G+ P++T V L GLM
Sbjct: 83 LADKVNSSWQKKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINTNCPSLEFVGLM 142
Query: 162 CIPPAMGN-----PKPHFYLLSEIARE-CK-------LTKLSMGMTRDFELAIASGATSV 208
I ++G+ P P F LL + E CK +LSMGM+ DF+ AI G+T+V
Sbjct: 143 TIG-SVGHDLSQGPNPDFQLLLSLREELCKKLSIPADQVELSMGMSMDFQHAIEVGSTNV 201
Query: 209 RIGSGIFGER 218
RIGS IFGER
Sbjct: 202 RIGSTIFGER 211
>gi|256372019|ref|YP_003109843.1| alanine racemase domain protein [Acidimicrobium ferrooxidans DSM
10331]
gi|256008603|gb|ACU54170.1| alanine racemase domain protein [Acidimicrobium ferrooxidans DSM
10331]
Length = 230
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 105/223 (47%), Gaps = 12/223 (5%)
Query: 1 MSLGNKLQVFKQKIENS-AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+L +L+ ++ IE A LA P +V V+K + +R A+ G EN
Sbjct: 1 MNLVEQLRERRRAIEAEVATLA--PVRPPRIVCVTKTHPVETVRAAVEAGNRELGENYAS 58
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E +K LR + DV+ FIG LQ ++ ++ V+ET+SR A L+
Sbjct: 59 ELAEKAAALR-DLDVRWHFIGHLQRRQIKQVSGAASVVETLSRVVEAERLAALGFDGE-- 115
Query: 120 LPVYIQVNT-GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNP-KPHFYL 176
V++QV +SG+ P + ++ + L V G+M + P P + F
Sbjct: 116 --VFVQVAPPDAPATRSGV-PREGAPELVAAARSLGLRVVGVMGVALPGEEAPVRTFFRS 172
Query: 177 LSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +A E +L + S GM+ D+ A GAT +R+G+ + G RP
Sbjct: 173 LVALADELELPERSFGMSADWRWATTEGATILRLGTALLGPRP 215
>gi|288923204|ref|ZP_06417346.1| alanine racemase domain protein [Frankia sp. EUN1f]
gi|288345440|gb|EFC79827.1| alanine racemase domain protein [Frankia sp. EUN1f]
Length = 318
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 113/303 (37%), Gaps = 87/303 (28%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++L V + +I +A A R + ++L+AVSK + + S G FAEN+ QEA
Sbjct: 12 LRSRLTVVRDRIVMAARAAGRDPEDLTLIAVSKTWPFEDVVALCSLGVRHFAENREQEAG 71
Query: 63 KK-------------------------------------------WIPLRKEW------- 72
K W P R +
Sbjct: 72 PKVEAVRRVLATLPAPSVAPGPGNAGAGGTPPTGRITLAGPPDGAWFPSRADGLATLGSA 131
Query: 73 ---DVQL-RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN- 127
DV + ++G LQ NK + +++V R + A LS + + V IQV+
Sbjct: 132 VRVDVPVWHYVGQLQRNKARSVAGWAHCVQSVDRVRLAETLSRVATESGSTIAVCIQVSL 191
Query: 128 ---------TGYEIQKS------------------GIMPNQTKDFVILCRQKYQLNVEGL 160
+G + K+ G P L + L + G+
Sbjct: 192 DRVGDVAVPSGAPVDKAFPTRENSAASPPVTAERGGARPEDVPALAELVARAPGLVLAGV 251
Query: 161 MCIPPAMGNPKPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
M + P P+P F L ++ + T +S GM+ D E AIA GAT +RIG+ +F
Sbjct: 252 MAVAPRGVPPRPAFARLRVVSERLRGDFPEATMVSAGMSSDLEDAIAEGATHLRIGTALF 311
Query: 216 GER 218
GER
Sbjct: 312 GER 314
>gi|260891128|ref|ZP_05902391.1| pyridoxal phosphate enzyme, YggS family [Leptotrichia hofstadii
F0254]
gi|260859155|gb|EEX73655.1| pyridoxal phosphate enzyme, YggS family [Leptotrichia hofstadii
F0254]
Length = 227
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 24/207 (11%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE------WDVQLRFI 79
+ V ++ VSK D ++ + + G F EN+ Q + K E WD FI
Sbjct: 27 EKVKILFVSKYFDVEEHKALIEMGYDYFGENRAQLYRDKLNEFSDEKYKNIKWD----FI 82
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G LQ NK+ I++ ++I ++ + ++ + I+ R + IQVN E K+G+
Sbjct: 83 GRLQKNKIKYIINSVNLIHSIDSYELLDEINKKAIENDRIINGLIQVNVSKEESKTGVY- 141
Query: 140 NQTKDFVILCRQKYQL-NVE--GLMCIPPAMGNP---KPHFYLLSEIARECK-----LTK 188
+DF + + + NV+ G M + P + +F + ++ E + +T+
Sbjct: 142 --IEDFKKDSEKYFSMSNVKIIGFMTMAPFEASESEINDYFLNMRKLKEEYQKQHDYVTE 199
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIF 215
+SMGM+ D+ A+ +GAT +RIGS +F
Sbjct: 200 ISMGMSNDYVEALKNGATIIRIGSKLF 226
>gi|149194613|ref|ZP_01871709.1| hypothetical protein CMTB2_01179 [Caminibacter mediatlanticus TB-2]
gi|149135357|gb|EDM23837.1| hypothetical protein CMTB2_01179 [Caminibacter mediatlanticus TB-2]
Length = 222
Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 105/198 (53%), Gaps = 13/198 (6%)
Query: 28 VSLVAVSKMV-DSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V +VAV+K D + ++ GQ F EN++Q+ ++K L E ++ FIG+LQ NK
Sbjct: 23 VQIVAVTKYTNDLEVLKRLYEDGQRAFGENRVQDMEEKVNGL-SELPIEWHFIGNLQKNK 81
Query: 87 VSEIVSLFD-VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
+++++ L +I++++ + A ++ K R L +++N+ E K G+ P + D
Sbjct: 82 INKLLKLNPFMIQSINSYELAQAINKRANKPIRCL---LEINSSKEPTKHGLEPEKAIDT 138
Query: 146 VILCRQKY-QLNVEGLMCIPPAMGNPKP---HFYLLSEIARECKLTKL---SMGMTRDFE 198
+ ++ +N++G+M I + + F L EI + KL SMGM+ DFE
Sbjct: 139 YLQIKESLPNINLQGVMTIGAHTDDEREIRKSFRLTYEIFDKLKLYGAKICSMGMSGDFE 198
Query: 199 LAIASGATSVRIGSGIFG 216
+AI G+ +R+GS +
Sbjct: 199 IAIEEGSNMIRVGSALLN 216
>gi|229031532|ref|ZP_04187532.1| hypothetical protein bcere0028_35860 [Bacillus cereus AH1271]
gi|228729821|gb|EEL80801.1| hypothetical protein bcere0028_35860 [Bacillus cereus AH1271]
Length = 200
Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 98/204 (48%), Gaps = 22/204 (10%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+ LVAV+K V +K + G + EN+ + +K+ + V FIGSLQ+ K
Sbjct: 3 DIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSK--VNWHFIGSLQTRK 60
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF---LPVYIQVNTGYEIQKSGIMPNQTK 143
V EI++ D + ++ R LSL Q R + +IQV T E K G+ +T
Sbjct: 61 VKEIINEIDYLHSLDR------LSLAKEIQKRADKKVKCFIQVKTSSEESKQGLAIEETI 114
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI------ARECKL-----TKLSMG 192
F+ ++ ++ V GLM + P + E+ +E +L +LSMG
Sbjct: 115 SFIQSLQELDKVEVVGLMTMAPFTEEEEEIRRCFKELRKLQTEVQELELLHAPCRELSMG 174
Query: 193 MTRDFELAIASGATSVRIGSGIFG 216
M+ D+ +AI GAT +R+G+ + G
Sbjct: 175 MSNDYTIAIEEGATYIRLGTILVG 198
>gi|322392780|ref|ZP_08066238.1| cell division protein YlmE [Streptococcus peroris ATCC 700780]
gi|321144358|gb|EFX39761.1| cell division protein YlmE [Streptococcus peroris ATCC 700780]
Length = 223
Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 100/222 (45%), Gaps = 16/222 (7%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N QVF+Q + + R SVS++AV+K VD + G EN++ + +K
Sbjct: 6 NTNQVFQQ-VTKAIQETGRKDGSVSVIAVTKYVDIATAANLIDQGVKHIGENRVDKFLEK 64
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ L + DV IGSLQ KV +I+ D + K A + + +R + ++
Sbjct: 65 YHAL-SDRDVTWHLIGSLQRRKVKDIIPYVDYFHALDSLKLAQEIQK---RANRKVKCFL 120
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA--- 181
QVN E K G + + Q+ GLM + P + + E
Sbjct: 121 QVNISGEESKHGFSKEELLTVLQDLSSLDQIEYVGLMTMAPFDAQTEELQKIFKETQELQ 180
Query: 182 ---RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIF 215
RE +L T+LSMGM+RDF+ AI G+T VRIG+ F
Sbjct: 181 QYIREQELPNMPMTELSMGMSRDFKEAIQCGSTFVRIGTAFF 222
>gi|78777433|ref|YP_393748.1| hypothetical protein Suden_1235 [Sulfurimonas denitrificans DSM
1251]
gi|78497973|gb|ABB44513.1| Protein of unknown function UPF0001 [Sulfurimonas denitrificans DSM
1251]
Length = 224
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 103/202 (50%), Gaps = 13/202 (6%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
K V +VA+SK ++I+ GQ F ENK Q+ + K L E ++ F+G+LQ
Sbjct: 26 DKHIVKIVAISKYSTCQEIKALYEIGQRAFGENKAQDLRVKSSEL-DELPLEWHFVGNLQ 84
Query: 84 SNKVSEIV----SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
NK++ ++ SLF ++++ + A + ++ + L +Q+N+ E K G+MP
Sbjct: 85 KNKINNLLDINPSLFQALDSL---ELAHEIQKKLHVRDVKLEALLQINSAKEESKHGVMP 141
Query: 140 -NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEIARECKLTKL-SMGMT 194
+ + + + ++ + + G+M I + K F I +E + + SMGM+
Sbjct: 142 EDAVQIYNQIKKECPNITLRGVMSIGAHTDDKKIIKKSFDTTYGIYKELEDADICSMGMS 201
Query: 195 RDFELAIASGATSVRIGSGIFG 216
DFELAI G+ +R+GS +F
Sbjct: 202 GDFELAIECGSNMIRLGSIMFN 223
>gi|229918555|ref|YP_002887201.1| alanine racemase domain protein [Exiguobacterium sp. AT1b]
gi|229469984|gb|ACQ71756.1| alanine racemase domain protein [Exiguobacterium sp. AT1b]
Length = 217
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 18/196 (9%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
+L+AV+K V + G F EN+ +K + K D + FIG+LQ+ KV
Sbjct: 24 TLIAVTKSVGVDVANALYAEGIRDFGENRPDALLEKVEGMPK--DARFHFIGTLQTRKVR 81
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSR-FLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
+I+ I ++ R L+ E+ K++ + ++QVNT E K G+ + F+
Sbjct: 82 QIIDYVAAIHSLDRLS----LAAEIDKRANGTIDCFVQVNTSGEDSKHGLEIEEVVPFIE 137
Query: 148 LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKL--------TKLSMGMTRD 196
C+Q + + GLM + P + F L + E K T+LSMGM+ D
Sbjct: 138 NCKQYPHIRIIGLMTMAPFTEEESVLRETFRRLRHLRDEVKANAYDHAPCTELSMGMSND 197
Query: 197 FELAIASGATSVRIGS 212
+ +AI GA+ VRIG+
Sbjct: 198 YPIAIEEGASFVRIGT 213
>gi|229075657|ref|ZP_04208639.1| hypothetical protein bcere0024_36220 [Bacillus cereus Rock4-18]
gi|229098371|ref|ZP_04229316.1| hypothetical protein bcere0020_36040 [Bacillus cereus Rock3-29]
gi|229104463|ref|ZP_04235130.1| hypothetical protein bcere0019_36090 [Bacillus cereus Rock3-28]
gi|229117397|ref|ZP_04246773.1| hypothetical protein bcere0017_36750 [Bacillus cereus Rock1-3]
gi|228666007|gb|EEL21473.1| hypothetical protein bcere0017_36750 [Bacillus cereus Rock1-3]
gi|228678905|gb|EEL33115.1| hypothetical protein bcere0019_36090 [Bacillus cereus Rock3-28]
gi|228684988|gb|EEL38921.1| hypothetical protein bcere0020_36040 [Bacillus cereus Rock3-29]
gi|228707433|gb|EEL59624.1| hypothetical protein bcere0024_36220 [Bacillus cereus Rock4-18]
Length = 200
Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 97/206 (47%), Gaps = 26/206 (12%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+ LVAV+K V +K + G + EN+ + +K+ + V FIGSLQ+ K
Sbjct: 3 DIKLVAVTKTVGIEKTNEVMEAGIIDLGENRNEGFLQKYEHFGSK--VNWHFIGSLQTRK 60
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF---LPVYIQVNTGYEIQKSGIMPNQTK 143
V EI++ D + ++ R LSL Q R + +IQV T E K G+ +T
Sbjct: 61 VKEIINEIDYLHSLDR------LSLAKEIQKRADKKVKCFIQVKTSSEESKQGLAIEETV 114
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKP-------------HFYLLSEIARECKLTKLS 190
F+ ++ ++ V GLM + P + L+ + CK +LS
Sbjct: 115 SFIQSLQELDKIEVVGLMTMAPFTEEEEEVRRCFKDLRKLQIEVQELNLLHAPCK--ELS 172
Query: 191 MGMTRDFELAIASGATSVRIGSGIFG 216
MGM+ D+ +AI GAT +R+G+ + G
Sbjct: 173 MGMSNDYTIAIEEGATYIRLGTILVG 198
>gi|256832921|ref|YP_003161648.1| alanine racemase domain-containing protein [Jonesia denitrificans
DSM 20603]
gi|256686452|gb|ACV09345.1| alanine racemase domain protein [Jonesia denitrificans DSM 20603]
Length = 253
Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 105/240 (43%), Gaps = 30/240 (12%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQ------------VIFA 54
L +I+N+A A R ++L+ +K + I A+ + +
Sbjct: 14 LTTVSTRIDNAAHTAHRNPADITLLLATKTQPTPTITDAIHTYRHLVTTQQITNRPLAIG 73
Query: 55 ENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF----DV-IETVSREKTASLL 109
EN++QE K L + IG LQSNK++ ++ D +++VS + A+ L
Sbjct: 74 ENRVQELSNKAADL-SSLRLSAHLIGPLQSNKINHTLTALAHHADAWVDSVSTPQLATKL 132
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
+ + + L V IQ+N + G P+ L + G M I P +
Sbjct: 133 N-DRWSHTHPLNVLIQINVSGAPTQHGCPPSDALTLANHIHTLPHLQLRGFMAIGPRTTD 191
Query: 170 P---KPHFYLLSEIARECKL-------TKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ ++ ++ I R+ L T LSMGM+ D ++A+ GAT VR+G+ +FG RP
Sbjct: 192 QTLLRDSYHSVAAI-RDAALAEGHKHATHLSMGMSNDLDIAVECGATIVRVGTAVFGARP 250
>gi|115385721|ref|XP_001209407.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114187854|gb|EAU29554.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 301
Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 104/224 (46%), Gaps = 46/224 (20%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALS---CGQVIFAENKLQE--AKKKWIPLRKE 71
+A + RP + L+AVSK+ + I +AL G + F EN LQE K K +P
Sbjct: 27 AAAKSDRP---IRLIAVSKLKPASDI-LALHQPPGGHLHFGENYLQELQEKAKLLPASIR 82
Query: 72 WDVQLRFIGSLQSNK----VSEIVSLFDVIETVSREKTASLLS---------LEMIKQSR 118
W FIG LQSNK ++ L+ +E+V EK ASLL L
Sbjct: 83 W----HFIGGLQSNKCVTLARDVRGLW-AVESVDSEKKASLLDKGWGERSAELRASDAED 137
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR----QKYQLNVEGLMCI-------PPAM 167
L V++QVNT E KSG+ P V LCR + +L ++G+M I
Sbjct: 138 RLRVFVQVNTSGEENKSGVDPGDGA--VALCRFIRDKCPRLRLQGVMTIGAIARSKATTP 195
Query: 168 GNPKPHFYLLSE----IARECKLT--KLSMGMTRDFELAIASGA 205
N F L + + +E L +LSMGM+ DFE AIA G+
Sbjct: 196 ENENEDFLCLRDTRDRVVKELGLEGLELSMGMSEDFEGAIALGS 239
>gi|226307034|ref|YP_002766994.1| hypothetical protein RER_35470 [Rhodococcus erythropolis PR4]
gi|226186151|dbj|BAH34255.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length = 249
Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 88/211 (41%), Gaps = 18/211 (8%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-------EWDVQLRFI 79
V+L+ V+K + R+ G F E++ QEA +K + V+ I
Sbjct: 35 DVALLPVTKFFPASDARILYELGCREFGESREQEAVEKVADFDGAAQSGAIDDPVRWHMI 94
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLL------SLEMIKQSRFLPVYIQVNTGYEIQ 133
G LQ NK + I +V + A L +L ++ L V IQV+ +
Sbjct: 95 GQLQRNKARSVAKWAYAIHSVDSARLADALDRAALGALSDGERKAPLRVLIQVSLDGDPA 154
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE-----IARECKLTK 188
+ G+ + L GLM +PP +P F +L + + T+
Sbjct: 155 RGGVPTGELTPLAERIESAEGLEFAGLMAVPPLGSDPDEQFEILRRAHLLILESHPRATE 214
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
LS GMT D E A+ G+T VR+G+ + G RP
Sbjct: 215 LSAGMTGDLEAAVRHGSTCVRVGTALLGSRP 245
>gi|294659120|ref|XP_461459.2| DEHA2F25762p [Debaryomyces hansenii CBS767]
gi|202953632|emb|CAG89878.2| DEHA2F25762p [Debaryomyces hansenii]
Length = 249
Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 113/225 (50%), Gaps = 21/225 (9%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL 76
S + A+ V LVAVSK+ S I + G F EN +QE K L K D++
Sbjct: 27 SNLSAEHSSKPVRLVAVSKLKPSSDIMALYNHGVRHFGENYVQELIGKSQELPK--DIKW 84
Query: 77 RFIGSLQSNKVSE----IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
FIG LQ+ K + + +L+ V S +K L S + + +Y+Q+NT E
Sbjct: 85 HFIGGLQTGKCKDLSKGVENLYAVEAIDSLKKCKKLESCRKNAEGNSINIYLQINTSGED 144
Query: 133 QKSGIMPN------QTKDFVILCRQKYQLNVEGLMCIPP------AMGNP--KPHFYLLS 178
QKSG +T +F++ +Q LN++GLM I GN K L
Sbjct: 145 QKSGYSLEVLDELYETVEFLLDPKQCTLLNIQGLMTIGSFSESISEEGNADFKRLLTLKQ 204
Query: 179 EIARECKLT-KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ + +L +LSMGM+ DF+ AI G++SVR+GS IFG RP ++
Sbjct: 205 KLDDKYRLDLELSMGMSNDFKEAIKQGSSSVRVGSSIFGARPTKS 249
>gi|229490375|ref|ZP_04384216.1| pyridoxal phosphate enzyme, YggS family [Rhodococcus erythropolis
SK121]
gi|229322665|gb|EEN88445.1| pyridoxal phosphate enzyme, YggS family [Rhodococcus erythropolis
SK121]
Length = 244
Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 88/211 (41%), Gaps = 18/211 (8%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-------EWDVQLRFI 79
V+L+ V+K + R+ G F E++ QEA +K + V+ I
Sbjct: 30 DVALLPVTKFFPASDARILYELGCREFGESREQEAVEKVADFDGAAQTGAIDDPVRWHMI 89
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLL------SLEMIKQSRFLPVYIQVNTGYEIQ 133
G LQ NK + I +V + A L +L +++ L IQV+ +
Sbjct: 90 GQLQRNKARSVAKWAYAIHSVDSARLADALDRAALSALSDGERTEPLRALIQVSLDGDPA 149
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE-----IARECKLTK 188
+ G+ + L GLM +PP +P F +L + + T+
Sbjct: 150 RGGVPTGELTPLAERIESAEGLEFAGLMAVPPLGSDPDEQFEILRRAHLLILESHPRATE 209
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
LS GMT D E A+ G+T VR+G+ + G RP
Sbjct: 210 LSAGMTGDLEAAVRHGSTCVRVGTALLGSRP 240
>gi|228922653|ref|ZP_04085953.1| hypothetical protein bthur0011_36380 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228960118|ref|ZP_04121782.1| hypothetical protein bthur0005_35890 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229111370|ref|ZP_04240923.1| hypothetical protein bcere0018_36160 [Bacillus cereus Rock1-15]
gi|229129178|ref|ZP_04258151.1| hypothetical protein bcere0015_36230 [Bacillus cereus BDRD-Cer4]
gi|229146472|ref|ZP_04274843.1| hypothetical protein bcere0012_36150 [Bacillus cereus BDRD-ST24]
gi|228637105|gb|EEK93564.1| hypothetical protein bcere0012_36150 [Bacillus cereus BDRD-ST24]
gi|228654415|gb|EEL10280.1| hypothetical protein bcere0015_36230 [Bacillus cereus BDRD-Cer4]
gi|228672146|gb|EEL27437.1| hypothetical protein bcere0018_36160 [Bacillus cereus Rock1-15]
gi|228799634|gb|EEM46587.1| hypothetical protein bthur0005_35890 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228837082|gb|EEM82423.1| hypothetical protein bthur0011_36380 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 200
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 22/204 (10%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+ LVAV+K V +K + G + EN+ + +K+ + V FIGSLQ+ K
Sbjct: 3 DIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSK--VNWHFIGSLQTRK 60
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF---LPVYIQVNTGYEIQKSGIMPNQTK 143
V EI++ D + ++ R LSL Q R + +IQV T E K G+ +
Sbjct: 61 VKEIINEIDYLHSLDR------LSLAKEIQKRADKKVKCFIQVKTSSEESKQGLAIEEVV 114
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKP------HFYLLSEIARECKL-----TKLSMG 192
F+ ++ ++ V GLM + P + +L +E +L +LSMG
Sbjct: 115 SFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTEVQELELLHAPCKELSMG 174
Query: 193 MTRDFELAIASGATSVRIGSGIFG 216
M+ D+ +AI GAT +R+G+ + G
Sbjct: 175 MSNDYTIAIEEGATYIRLGTILVG 198
>gi|158316849|ref|YP_001509357.1| PLP-binding domain-containing protein [Frankia sp. EAN1pec]
gi|158112254|gb|ABW14451.1| putative enzyme with PLP-binding domain [Frankia sp. EAN1pec]
Length = 319
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 108/300 (36%), Gaps = 84/300 (28%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L V + +I +A A R ++L+AVSK ++ + ++ G FAEN+ QEA
Sbjct: 16 LRERLTVVRDRITVAARDAGRDPAELTLIAVSKTRPAEDVLALVALGVRHFAENREQEAG 75
Query: 63 KK----------------------------------------WIPLRKEWDVQL------ 76
K W P R + L
Sbjct: 76 PKTEAVRLALAAAAAGGSDEHTMWSDDDRFRESSPLADTSGAWRPSRVDQGPTLGPAAGP 135
Query: 77 -----RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN---- 127
F+G LQ NK + +++V R + LS + R + V IQVN
Sbjct: 136 DVPVWHFVGQLQRNKARAVAGWVHCVQSVDRARLVEALSRAATARGRQISVCIQVNLDIA 195
Query: 128 -----TGYEIQKSGI-------------------MPNQTKDFVILCRQKYQLNVEGLMCI 163
G ++ + +P L L + G+M +
Sbjct: 196 EPVGAPGAPAARNALSTRENEPTAGAADGARGGALPADVPALAELVAGSEGLVLTGVMAV 255
Query: 164 PPAMGNPKPHFYLLSEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L E+A T +S GM+ D E A+A GAT +RIG+ +FGER
Sbjct: 256 APRGAPARPAFARLREVADRLLSEHPAATLVSAGMSGDLEDAVAEGATHLRIGTALFGER 315
>gi|228909726|ref|ZP_04073549.1| hypothetical protein bthur0013_38780 [Bacillus thuringiensis IBL
200]
gi|228850015|gb|EEM94846.1| hypothetical protein bthur0013_38780 [Bacillus thuringiensis IBL
200]
Length = 200
Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 22/204 (10%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+ LVAV+K V +K + G + EN+ + +K+ + V FIGSLQ+ K
Sbjct: 3 DIKLVAVTKTVGIEKTNEVIETGIIDLGENRNEGFLQKYEHFGSK--VNWHFIGSLQTRK 60
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF---LPVYIQVNTGYEIQKSGIMPNQTK 143
V EI++ D + ++ R LSL Q R + +IQV T E K G+ +
Sbjct: 61 VKEIINEIDYLHSLDR------LSLAKEIQKRADKKVKCFIQVKTSSEESKQGLAIEEVV 114
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKP------HFYLLSEIARECKL-----TKLSMG 192
F+ ++ ++ V GLM + P + +L +E +L +LSMG
Sbjct: 115 SFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTEVQELELLHAPCKELSMG 174
Query: 193 MTRDFELAIASGATSVRIGSGIFG 216
M+ D+ +AI GAT +R+G+ + G
Sbjct: 175 MSNDYTIAIEEGATYIRLGTILVG 198
>gi|228940989|ref|ZP_04103547.1| hypothetical protein bthur0008_36290 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228973920|ref|ZP_04134495.1| hypothetical protein bthur0003_36750 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228980509|ref|ZP_04140819.1| hypothetical protein bthur0002_36770 [Bacillus thuringiensis Bt407]
gi|228779329|gb|EEM27586.1| hypothetical protein bthur0002_36770 [Bacillus thuringiensis Bt407]
gi|228785786|gb|EEM33790.1| hypothetical protein bthur0003_36750 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818668|gb|EEM64735.1| hypothetical protein bthur0008_36290 [Bacillus thuringiensis
serovar berliner ATCC 10792]
Length = 200
Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 22/204 (10%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+ LVAV+K V +K + G + EN+ + +K+ + V FIGSLQ+ K
Sbjct: 3 DIKLVAVTKTVGIEKTNEVIETGIIDLGENRNEGFLQKYEHFGSK--VNWHFIGSLQTRK 60
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF---LPVYIQVNTGYEIQKSGIMPNQTK 143
V EI++ D + ++ R LSL Q R + +IQV T E K G+ +
Sbjct: 61 VKEIINEIDYLHSLDR------LSLAKEIQKRADKKVKCFIQVKTSSEESKQGLAIEEVV 114
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKP------HFYLLSEIARECKL-----TKLSMG 192
F+ ++ ++ V GLM + P + +L +E +L +LSMG
Sbjct: 115 SFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTKVQELELLHAPCKELSMG 174
Query: 193 MTRDFELAIASGATSVRIGSGIFG 216
M+ D+ +AI GAT +R+G+ + G
Sbjct: 175 MSNDYTIAIEEGATYIRLGTILVG 198
>gi|313622997|gb|EFR93291.1| protein YlmE [Listeria innocua FSL J1-023]
Length = 199
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 23/202 (11%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
VAV+K +D I G F EN+ K L + D+ +IGSLQ+ KV ++
Sbjct: 1 VAVTKTIDVAGITELYDLGIRHFGENRADVFLDKTRELADKDDICWHYIGSLQTRKVKDV 60
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQ-SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
+ D + ++ R S L+ E+ K+ ++ + ++QVN E K G + F+
Sbjct: 61 LPEIDYLHSLDR----SSLAKEIEKRATKPIKCFLQVNISGEESKHGFSKEEALSFL--- 113
Query: 150 RQKYQLN---VEGLMCIPPAMGNPKPHFYLLSEIA-----------RECKLTKLSMGMTR 195
Q+ N + GLM + P + K ++ E+ + T+LSMGMT
Sbjct: 114 -QEADFNFIEIVGLMTMAPITNSDKELHHVFHELKQLQQEIHALQLKNIPCTELSMGMTN 172
Query: 196 DFELAIASGATSVRIGSGIFGE 217
D+ +AI GAT +R+G + +
Sbjct: 173 DYGIAITEGATFIRVGRALVSD 194
>gi|162447564|ref|YP_001620696.1| hypothetical protein ACL_0704 [Acholeplasma laidlawii PG-8A]
gi|161985671|gb|ABX81320.1| conserved hypothetical protein [Acholeplasma laidlawii PG-8A]
Length = 197
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 9/186 (4%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
+ SK +++ + G F EN +Q K L D+ IG LQSNK I
Sbjct: 11 IVASKYFSIDEMKKIYNLGARHFGENYVQSLLDKKSSLNDLKDISWHLIGHLQSNKTKLI 70
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPV--YIQVNTGYEIQKSGIMPNQTKDFVIL 148
++ D + T+ K A MI++ R P+ +IQ+N K GI+ +F+
Sbjct: 71 INEIDYLHTLDSIKLAG-----MIQKYRNTPLNCFIQINLEKNDNKEGILIENLDEFIQE 125
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPH--FYLLSEIARECKLTKLSMGMTRDFELAIASGAT 206
++ ++N+ G M I + F L+++ + L SMGM+ D+ELAI +
Sbjct: 126 IKKYDKINLIGFMAIGAIDDVVRTEEIFKTLNDLKMKYNLNYTSMGMSNDYELAIKYHSD 185
Query: 207 SVRIGS 212
+RIGS
Sbjct: 186 FLRIGS 191
>gi|27904971|ref|NP_778097.1| hypothetical protein bbp497 [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|34222840|sp|Q89A48|Y497_BUCBP RecName: Full=UPF0001 protein bbp_497
gi|27904369|gb|AAO27202.1| hypothetical protein bbp_497 [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 223
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 25/221 (11%)
Query: 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69
KQKI N + K + L+AVSK I+ A+ CGQ F EN +QE++ K I L
Sbjct: 11 LKQKITNISKKFKINTQKIKLLAVSKNRSVNDIKKAILCGQNSFGENYVQESQPK-IKLF 69
Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI-QVNT 128
+++ +IG +QSNK I F T++ +KTA LL +++ P + ++NT
Sbjct: 70 N--NIEWHYIGQIQSNKAHIIAKNFSWCHTITNKKTAVLL-------NKYRPYSLPKLNT 120
Query: 129 GYEIQKSGIMPNQTKDFVIL------CRQKYQLNVEGLMCIP--------PAMGNPKPHF 174
+I N D + LN+ G+M +P H
Sbjct: 121 LIQINIRDNTINIDDDIETIKQLAKTINSLDNLNLRGIMAMPYFKNTYLEQIQSYKYIHL 180
Query: 175 YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
Y + + +S+G + D + A+ SG+T +RIGS IF
Sbjct: 181 YFDILKKKYTYIDTVSLGTSHDIQAALYSGSTLLRIGSSIF 221
>gi|255035778|ref|YP_003086399.1| alanine racemase domain-containing protein [Dyadobacter fermentans
DSM 18053]
gi|254948534|gb|ACT93234.1| alanine racemase domain protein [Dyadobacter fermentans DSM 18053]
Length = 220
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 97/217 (44%), Gaps = 15/217 (6%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
+N A + + + LVAV+K + + A G +F ENK+QE K+ L K D+
Sbjct: 6 DNLAQIEQALRKETRLVAVTKTKPTTLLMEAYEAGARLFGENKVQEMVAKYEELPK--DI 63
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
+ IG LQ+NKV + ++ +V K ++ E K R + +Q+ E K
Sbjct: 64 EWHMIGHLQTNKVKYMAPFVSLVHSVDSFKLLKEINKEARKNDRIIDCLLQIYIAREETK 123
Query: 135 SGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAMGNP---KPHFYLLSEIARECK---- 185
G+ ++ + NV GLM + + + F L K
Sbjct: 124 FGLSEDEALALITSPELATLANVRIAGLMGMASNTDDQEAVRSEFRGLKSTFEAFKNHEN 183
Query: 186 ----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +LSMGM+ D+ +A+ G+T VR+GS IFG R
Sbjct: 184 AQVTMRELSMGMSGDYLIAMEEGSTLVRVGSAIFGSR 220
>gi|326382564|ref|ZP_08204255.1| alanine racemase domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326198683|gb|EGD55866.1| alanine racemase domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
Length = 246
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 101/222 (45%), Gaps = 18/222 (8%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD 73
I+ +A A R V+L+ V+K + + L G+ F E++ EA +K +R D
Sbjct: 23 IDAAAESADRDPGEVTLLVVTKFFPADDVLRLLDLGEREFGESREPEAGRKMAAVRAASD 82
Query: 74 VQL--RFIGSLQSNKVSEI------VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
V+ IGS+Q K I V D + + AS + + ++ L + +Q
Sbjct: 83 VEFAADMIGSVQRKKAGGIARWARRVHSVDSLALIEAFDGASSRAQDSGDRTGPLGMMLQ 142
Query: 126 VNTGYEIQKSGIMPN---QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-- 180
V+ + + G+ + Q D V+ +L+ GLM I P +P L+EI
Sbjct: 143 VSLDGDPDRGGLPVSGLAQAADRVLASPDALRLD--GLMLIAPLGMDPGEAMSRLAEIRS 200
Query: 181 ---ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
R +LS GM+ D E AIA G+T VR+G+ I G RP
Sbjct: 201 HFLDRYPDARELSAGMSGDLESAIAHGSTCVRVGTAIMGARP 242
>gi|332241070|ref|XP_003269712.1| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like [Nomascus leucogenys]
Length = 242
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 112/233 (48%), Gaps = 41/233 (17%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVS----LVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D S LVAVSK + + A GQ F EN
Sbjct: 11 LGVGCALRAVNERVQQA--VARRPQDLPSIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 68
Query: 57 KLQE-----AKKKWIPLRKEWDVQLRFIGSLQS---NKVSEIVSLFDVIETVSREKTASL 108
+QE + K + L E ++ FIG LQ NK+ + +LF ++ETV K A
Sbjct: 69 YVQELLEKASNPKILSLCPE--IKWHFIGHLQKQNVNKLMAVPNLF-MLETVDSVKLADK 125
Query: 109 LSLEMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPP 165
++ K+ L V IQ+NT E K G+ P++T V K L GLM I
Sbjct: 126 VNSSWQKKGSLERLKVMIQINTSGEESKHGVPPSETIAIVEHINAKCPNLEFVGLMTIG- 184
Query: 166 AMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ G+ LS G DF++ + G+T+VR+GS IFGER
Sbjct: 185 SFGH------------------DLSQGPNPDFQIEV--GSTNVRVGSMIFGER 217
>gi|229047585|ref|ZP_04193175.1| hypothetical protein bcere0027_35680 [Bacillus cereus AH676]
gi|228723832|gb|EEL75187.1| hypothetical protein bcere0027_35680 [Bacillus cereus AH676]
Length = 200
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 22/204 (10%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
+ LVAV+K V +K + G + EN+ + +K+ + V FIGSLQ+ K
Sbjct: 3 DIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSK--VNWHFIGSLQTRK 60
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRF---LPVYIQVNTGYEIQKSGIMPNQTK 143
V EI++ D + ++ R LSL Q R + +IQV T E K G+ +
Sbjct: 61 VKEIINEIDYLHSLDR------LSLAKEIQKRADKKVKCFIQVKTSSEESKQGLAIEEVV 114
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKP------HFYLLSEIARECKL-----TKLSMG 192
F+ ++ ++ V GLM + P + +L +E +L +LSMG
Sbjct: 115 PFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTEVQELELLHAPCKELSMG 174
Query: 193 MTRDFELAIASGATSVRIGSGIFG 216
M+ D+ +AI GAT +R+G+ + G
Sbjct: 175 MSNDYTIAIEEGATYIRLGTILVG 198
>gi|260584174|ref|ZP_05851922.1| pyridoxal phosphate enzyme, YggS family [Granulicatella elegans
ATCC 700633]
gi|260158800|gb|EEW93868.1| pyridoxal phosphate enzyme, YggS family [Granulicatella elegans
ATCC 700633]
Length = 219
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 104/211 (49%), Gaps = 14/211 (6%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+I+ S R V + V+K +++I+ S G FAEN++++ ++ +E
Sbjct: 14 RIQQSCDKVSRDVQEVCPIIVTKNRTNEEIQEVYSLGFRHFAENRVEKLLERQEVFPQE- 72
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV--YIQVNTGY 130
D+ IG LQ KV +IV+ + R L +E I++ P+ +++VN
Sbjct: 73 DIVWHLIGPLQKRKVKQIVNRIQYFHAIDR-----LSIMEEIEKRLDSPLKCFLEVNVSG 127
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLT 187
E K G + +Q ++++ G M + P N + +F+ L E++++ + T
Sbjct: 128 EESKHGFTKAGVFEAFEAAKQYEKIDIIGFMTMAPFEANEEEIRHYFHELKEVSKKIQST 187
Query: 188 ---KLSMGMTRDFELAIASGATSVRIGSGIF 215
KLSMGM++D+ +AI GA +RIG+ F
Sbjct: 188 STLKLSMGMSQDYPIAIEEGAHFIRIGTAWF 218
>gi|6137630|pdb|1CT5|A Chain A, Crystal Structure Of Yeast Hypothetical Protein Ybl036c-
Selenomet Crystal
Length = 256
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 103/212 (48%), Gaps = 28/212 (13%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNKV 87
L+ VSK+ + I++ G F EN +QE K K +P D++ FIG LQ+NK
Sbjct: 43 LLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPD----DIKWHFIGGLQTNKC 98
Query: 88 SEIVSLFDV--IETVSREKTASLLSLEMIK-QSRFLPVY--IQVNTGYEIQKSGIMPNQT 142
++ + ++ +ET+ K A L+ K Q P+ +Q+NT +E QKSG + N+
Sbjct: 99 KDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSG-LNNEA 157
Query: 143 K-----DFVILCRQKYQLNVEGLMCIPP---AMGNPKPH--FYLLSEIARECKLT----- 187
+ DF + KY + + GL I + + K + F L E ++
Sbjct: 158 EIFEVIDFFLSEECKY-IKLNGLXTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTSL 216
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
KLS G + DF AI G VRIG+ IFG RP
Sbjct: 217 KLSXGXSADFREAIRQGTAEVRIGTDIFGARP 248
>gi|167837775|ref|ZP_02464658.1| hypothetical protein Bpse38_14897 [Burkholderia thailandensis
MSMB43]
Length = 145
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 5/141 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + ++I+++A A R +V+L+AVSK + +R A + GQ F EN +QE+
Sbjct: 3 DLAARFASVHRRIDDAARAAGRDPRAVTLLAVSKTFPADAVRAAHAAGQRAFGENYVQES 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K LR E ++ FIG LQSNK + FD + TV R K A LS +
Sbjct: 63 IDKIDTLADLRAE--LEWHFIGPLQSNKTRPVAERFDWVHTVDRLKIAQRLSGQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMP 139
L V +QVN E KSG+ P
Sbjct: 121 PLNVCVQVNISGEASKSGVAP 141
>gi|223985287|ref|ZP_03635367.1| hypothetical protein HOLDEFILI_02673 [Holdemania filiformis DSM
12042]
gi|223962743|gb|EEF67175.1| hypothetical protein HOLDEFILI_02673 [Holdemania filiformis DSM
12042]
Length = 213
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 12/201 (5%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
++ L+ VSK +I+ G F EN+ QE +K L + D++ FIG LQ
Sbjct: 13 QNQCELLIVSKHRSVAQIQAYYDRGARDFGENRAQELLEKAPQLPQ--DIRWNFIGHLQR 70
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV ++ + ++ + AS+L E + +R + V + N E K+G+ Q
Sbjct: 71 NKVRAVLPYLYRVCSLDSLELASVLDREAARLNRTIGVLAEFNLAEESTKTGMDKTQAFA 130
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGN----------PKPHFYLLSEIARECKLTKLSMGMT 194
F RQ L EG++ + P + + + F L + + T SMGM+
Sbjct: 131 FFEALRQFEHLIPEGILVMGPHVEDEAAIAAVFHEARALFDQLKAQFGDSRFTICSMGMS 190
Query: 195 RDFELAIASGATSVRIGSGIF 215
D+ +A+ G+T +R+G+ +F
Sbjct: 191 HDYPIALREGSTQLRLGTILF 211
>gi|257483589|ref|ZP_05637630.1| hypothetical protein PsyrptA_10063 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 137
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 70/137 (51%), Gaps = 5/137 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAANREPASVGLLAVSKTKPAGDLREAYTAGLRNFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + L D+ L FIG +QSNK I F + +V R K A LS + +
Sbjct: 63 LGKQLELS---DLPLCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEALEP 119
Query: 120 LPVYIQVNTGYEIQKSG 136
L + IQVN E KSG
Sbjct: 120 LNICIQVNVSGEASKSG 136
>gi|283778808|ref|YP_003369563.1| alanine racemase domain-containing protein [Pirellula staleyi DSM
6068]
gi|283437261|gb|ADB15703.1| alanine racemase domain protein [Pirellula staleyi DSM 6068]
Length = 244
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 17/226 (7%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N LQV + +I ++ A R V LVAV+K V ++ S GQ+ E++ Q+ +K
Sbjct: 14 NLLQV-QARIASACERAGRAPRDVRLVAVTKYVSAEIAAEIASLGQIDLGESRPQQIWEK 72
Query: 65 W-----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
P ++ IG LQ NK+ + L D++ + K L E K
Sbjct: 73 QPILASDPRLAAQPIRWHMIGPLQRNKIRRTLPLVDLLHSGESLKLLESLDEEAAKAGLT 132
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
V ++VN + K G ++ + L ++GLM + G L ++
Sbjct: 133 SHVLLEVNLSGDTTKHGFRADELPALLPQLTALTHLRIDGLMTMAALEGTLDDAQRLFAQ 192
Query: 180 I-----------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ A +L +LSMGM+ DFE AI GAT VR+GS +
Sbjct: 193 LRAVRDKLREQSAGALELPELSMGMSDDFERAILEGATLVRVGSAL 238
>gi|229495772|ref|ZP_04389500.1| pyridoxal phosphate enzyme, YggS family [Porphyromonas endodontalis
ATCC 35406]
gi|229317346|gb|EEN83251.1| pyridoxal phosphate enzyme, YggS family [Porphyromonas endodontalis
ATCC 35406]
Length = 242
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 98/215 (45%), Gaps = 21/215 (9%)
Query: 23 RPK--DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
RP+ + +LV VSK +I+ A G F EN++QE K L + D++ IG
Sbjct: 28 RPQIPSNATLVVVSKYHAVDEIKEAYDAGVRDFGENRVQELVSKVDKLPE--DIRWHLIG 85
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
SLQ NKV I I+++ + + +R + ++V E KSG+ +
Sbjct: 86 SLQRNKVKYIAPFITSIQSIESLALYDEVERRAAQHNRTIDCLVEVYVAQEETKSGVPYD 145
Query: 141 QTKDF--VILCRQ---KYQLNVEGLMC----------IPPAMGNPKPHFYLLSE--IARE 183
+ + F +L RQ + + GLM I + FY L E +++
Sbjct: 146 EVEAFFAALLDRQAEGNAHIRLRGLMGMATHTDSEAEIRAEFAKLRGLFYRLKEGLMSQY 205
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D+ +A++ G+ VRIG+ I G R
Sbjct: 206 PCFDTLSMGMSEDWSIALSEGSNMVRIGTAIMGPR 240
>gi|301166825|emb|CBW26402.1| putative alanine racemase [Bacteriovorax marinus SJ]
Length = 237
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 45/231 (19%)
Query: 16 NSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW--D 73
NS + K K +AV+K I ++ G F EN++ + ++K + K+ D
Sbjct: 15 NSKLQEKTNK--TQFIAVTKYSPVDDIFISYDLGHRDFGENRVLDLQEKALEFEKKGLDD 72
Query: 74 VQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIKQSRF----LPVYIQVN 127
V FIG LQSNK++ ++ + I ++ + SLL + K+ ++ L +++QVN
Sbjct: 73 VHWHFIGHLQSNKINRLLKIPNLKYIHSID---SLSLLEQILAKEDQYRGERLGLFLQVN 129
Query: 128 TGYEIQKSGIMPNQTKDFVI---LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI---A 181
T E QK G + + L ++ ++GLM MG + S+I A
Sbjct: 130 TSAEEQKQGFSTYDSLAGAVNHFLDEHGKRIYLKGLMT----MGKIRT-----SDIEGEA 180
Query: 182 REC--KLTK---------------LSMGMTRDFELAIASGATSVRIGSGIF 215
REC KL + LSMGM+ D+E+AI G+ +R+GS ++
Sbjct: 181 RECFKKLHRFKERLADDFGMTDLCLSMGMSGDYEVAIEEGSDFIRVGSALY 231
>gi|261884824|ref|ZP_06008863.1| hypothetical protein CfetvA_06189 [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 199
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 95/200 (47%), Gaps = 30/200 (15%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
S L+AVSK V ++ + GQ+ F EN++QE K+K + K+ ++ FIG LQ+NK
Sbjct: 12 STKLIAVSKNVTENEVLELYNQGQIDFGENRVQELKRK-KEILKDLNLNWHFIGRLQANK 70
Query: 87 VSEIVSL----------FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG 136
++ +++L F + E V + L+ I LP +Q+N+ +E K G
Sbjct: 71 INHLLALHPNLWQSCESFSMAEAVDKR-------LDYI-----LPTLLQINSAHEESKQG 118
Query: 137 IMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPK------PHFYLLSEIARECKLTKL 189
+ PN ++F+ + + LN+ G+M I + K Y + E +E
Sbjct: 119 VDPNAACEEFLRIKQSCKNLNLIGVMSIGAHSDDIKEIQKSFESTYKIYENLQEHGAKIC 178
Query: 190 SMGMTRDFELAIASGATSVR 209
SMGM+ D+E S R
Sbjct: 179 SMGMSSDYERPAGSRRHQAR 198
>gi|303232631|ref|ZP_07319316.1| pyridoxal phosphate enzyme, YggS family [Atopobium vaginae
PB189-T1-4]
gi|302481117|gb|EFL44192.1| pyridoxal phosphate enzyme, YggS family [Atopobium vaginae
PB189-T1-4]
Length = 266
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 31/225 (13%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---------- 70
+ P+D ++L AVSK + ++K+ AL G +F EN++Q ++K LR
Sbjct: 30 GRNPQD-ITLCAVSKTLPAEKLPCALRAGYRVFGENRVQVLQEKLDMLRTPACQSICAAT 88
Query: 71 ------------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
V IG+LQ NK+++++ I++++ A L+ +
Sbjct: 89 SNAAAAGNPAGACAPVSFDMIGTLQKNKLNKLIGAARRIQSLADVDMARALNERCAVHNV 148
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH--FYL 176
+ V +++N E KSG + + + + L ++GLMC+ PA + F
Sbjct: 149 RMHVLLELNISGEASKSGFSVPELMEHMSGFTELSHLVIDGLMCMAPAHARDEARACFKE 208
Query: 177 LSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L+ + + + LS GM+ DF++AI G+T +R+G +F
Sbjct: 209 LTRVQARLRADYNLSCSVLSCGMSDDFDIAIQEGSTLIRLGRILF 253
>gi|205373283|ref|ZP_03226087.1| hypothetical protein Bcoam_08120 [Bacillus coahuilensis m4-4]
Length = 191
Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 20/160 (12%)
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL-EMIKQSRFLPV--YIQVNTG 129
+V +IG+LQ+ KV +++ D + ++ R LSL + I++ PV ++QVN
Sbjct: 35 NVTWHYIGNLQTRKVKSVINKVDYLHSLDR------LSLAKEIEKRANAPVLCFVQVNVS 88
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK- 185
E K GI P +F+ + V GLM + P + + F L + E K
Sbjct: 89 GEESKQGIAPEHIMEFIKELAHFSNIKVVGLMTMAPYSSDEVLLRTIFQKLRVLRDEIKN 148
Query: 186 -------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ DFELAI GAT +RIG+ + G +
Sbjct: 149 LNLDYAPCQELSMGMSNDFELAIEEGATYIRIGTSLVGNK 188
>gi|311747401|ref|ZP_07721186.1| pyridoxal phosphate enzyme, YggS family [Algoriphagus sp. PR1]
gi|126574685|gb|EAZ79072.1| pyridoxal phosphate enzyme, YggS family [Algoriphagus sp. PR1]
Length = 225
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 92/204 (45%), Gaps = 18/204 (8%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
LVAVSK ++ A + G F ENK+QE + K L + D++ IG LQ NKV
Sbjct: 21 LVAVSKTKPIADLKAAYATGIRDFGENKVQELQDKHPELPE--DIRWHMIGHLQRNKVKY 78
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI----MPNQTKD- 144
I +I V K ++ + K R + V +Q++ E K G + + KD
Sbjct: 79 IAPYVYLIHGVDSFKLLKEINKQGAKIDRVISVLLQIHIAEEESKFGFDKAELESMFKDD 138
Query: 145 -FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE---------CKLTKLSMGMT 194
F L K + + G+ + F L + E K+ +LSMGM+
Sbjct: 139 HFKALTHVKIK-GLMGMATFTQDQNQVRKEFKSLKGLFEELKQQELPDFVKMEELSMGMS 197
Query: 195 RDFELAIASGATSVRIGSGIFGER 218
D+ +A G+T VRIGS IFG R
Sbjct: 198 GDYLIAQEEGSTMVRIGSAIFGAR 221
>gi|32490829|ref|NP_871083.1| hypothetical protein WGLp080 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166035|dbj|BAC24226.1| yggS [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 233
Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 12/224 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + KI N + R +++L+ SK +I+ A Q F EN +QEA KK +
Sbjct: 9 LEKIQNKIYNLSKYYNRNPKNINLLLASKSRSVYEIKFANEYNQNNFGENYVQEAIKKIV 68
Query: 67 PLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
+K ++ IG +QSNK I FD T++ K + L+ + + L V
Sbjct: 69 WFKKNHPKNNLIWHMIGQIQSNKSKLIAKYFDWCHTINNIKISKKLNNYRKIKKKPLKVL 128
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAMGNPKPHFYLLSEI-- 180
IQ+N E + G + + QK L ++G+M P + Y + I
Sbjct: 129 IQININEEKNRYGSSLKEFDNIYEFIFQKCNNLMLKGIMIFPIITDDLNKKIYNFNIIID 188
Query: 181 ------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LS G T D + AI G+T +RIG GIF +
Sbjct: 189 KFNTLKNKNSNFNVLSFGTTSDIDHAIKIGSTLLRIGKGIFENK 232
>gi|311113345|ref|YP_003984567.1| YggS family pyridoxal phosphate enzyme [Rothia dentocariosa ATCC
17931]
gi|310944839|gb|ADP41133.1| YggS family pyridoxal phosphate enzyme [Rothia dentocariosa ATCC
17931]
Length = 273
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 97/225 (43%), Gaps = 33/225 (14%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR---KEWD-VQLRFIGSL 82
+V LV V+K + + + G IF EN+ QEA K LR K D FIG L
Sbjct: 46 TVRLVTVTKFFPASDVAALYTQGVRIFGENRDQEAAPKARALRAIEKPADPAYWTFIGQL 105
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRF---------------LPVYIQV 126
Q+NK +V +++V R L+ Q +R+ L IQV
Sbjct: 106 QTNKAKSVVKYAHQVQSVDRSSLIDSLAKAYRNQVARYEAGEQDAPAALSQGALECLIQV 165
Query: 127 N------TGY--EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+ G+ E + G ++ + + +L G+M + P NP F L
Sbjct: 166 SLEAQATAGHASEGARGGTDQDEILELAERIEAQEELRCGGIMAVAPLGANPDESFEKLW 225
Query: 179 EIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A+ + ++S GM+ D E AI G+T VR+GS I G+R
Sbjct: 226 ELAQGLRAEFPHADQISAGMSADLEAAIRWGSTCVRVGSDIMGKR 270
>gi|300741270|ref|ZP_07071291.1| pyridoxal phosphate enzyme, YggS family [Rothia dentocariosa M567]
gi|300380455|gb|EFJ77017.1| pyridoxal phosphate enzyme, YggS family [Rothia dentocariosa M567]
Length = 273
Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 97/225 (43%), Gaps = 33/225 (14%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR---KEWD-VQLRFIGSL 82
+V LV V+K + + + G IF EN+ QEA K LR K D FIG L
Sbjct: 46 TVRLVTVTKFFPASDVAALYTQGVRIFGENRDQEAAPKARALRAIEKPADPAYWTFIGQL 105
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRF---------------LPVYIQV 126
Q+NK +V +++V R L+ Q +R+ L IQV
Sbjct: 106 QTNKAKSVVKYAHQVQSVDRSSLIDSLAKAYRNQVARYETGEQDAPAALSQGALECLIQV 165
Query: 127 N------TGY--EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+ G+ E + G ++ + + +L G+M + P NP F L
Sbjct: 166 SLEAQATAGHASEGARGGTDQDEILELAERIEAQEELRCGGIMAVAPLGANPDESFEKLW 225
Query: 179 EIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A+ + ++S GM+ D E AI G+T VR+GS I G+R
Sbjct: 226 ELAQGLRAEFPHADQISAGMSADLEAAIRWGSTCVRVGSDIMGKR 270
>gi|239917856|ref|YP_002957414.1| conserved hypothetical protein TIGR00044 [Micrococcus luteus NCTC
2665]
gi|281413651|ref|ZP_06245393.1| hypothetical protein MlutN2_00347 [Micrococcus luteus NCTC 2665]
gi|239839063|gb|ACS30860.1| conserved hypothetical protein TIGR00044 [Micrococcus luteus NCTC
2665]
Length = 262
Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 97/219 (44%), Gaps = 33/219 (15%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR-------KEWDVQLRFIGS 81
+LV V+K ++ + + G EN+ QEA+ K + W F+G
Sbjct: 44 ALVVVTKTHPAEDVVRLAALGVTDVGENRDQEARPKAEAVAAALGADAPRW----HFVGQ 99
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP----------VYIQVNT-GY 130
LQ+NK +V V+E+V R + A LS ++ + P V + V+
Sbjct: 100 LQTNKAKYVVRYASVVESVDRPELAEALSRALLLRREREPEAAIPDLECLVQVDVDDRAD 159
Query: 131 EIQKSGIMPN---QTKDFVILCR---QKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
E + GI P + +D L L + GLMC+ P +P+ F L+ +
Sbjct: 160 EDRPEGIGPRGGARPEDVPALTDAIAGLPGLRLGGLMCVAPRGLDPEDAFRRLAALGAHL 219
Query: 185 K-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ T LSMGM+ D E A+ +GAT VRIGS + G R
Sbjct: 220 RQTHPEATALSMGMSADLEAAVRAGATQVRIGSDVLGAR 258
>gi|224372989|ref|YP_002607361.1| hypothetical protein NAMH_0959 [Nautilia profundicola AmH]
gi|223589859|gb|ACM93595.1| conserved hypothetical protein [Nautilia profundicola AmH]
Length = 219
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 113/214 (52%), Gaps = 14/214 (6%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMV-DSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
Q++E +A L + V +VAV+K +++ +R + GQ F EN++Q+ + K L
Sbjct: 8 QRVE-AARLRRSEHLIVQIVAVTKYTKETEPLRRLYAEGQRAFGENRVQDMEDKVNAL-S 65
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFD-VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
+ ++ FIG+LQ NK+++++ L +I++++ + A ++ K R L +++N+
Sbjct: 66 DLPIEWHFIGNLQKNKINKLLKLNPFMIQSINSYELAEAINKRTDKPVRCL---LEINSA 122
Query: 130 YEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK 185
E K G+ P + + ++ +N++G+M I + + + F L +I + K
Sbjct: 123 KEPTKHGLQPELAIETYLKIKENLPNINLQGVMTIGAHVDDETEIRKSFRLTYDIFEKLK 182
Query: 186 LTKL---SMGMTRDFELAIASGATSVRIGSGIFG 216
SMGM+ DFE+AI G+ +R+GS +
Sbjct: 183 PYGAKICSMGMSGDFEIAIEEGSNMIRVGSALLN 216
>gi|320101819|ref|YP_004177410.1| alanine racemase domain-containing protein [Isosphaera pallida ATCC
43644]
gi|319749101|gb|ADV60861.1| alanine racemase domain protein [Isosphaera pallida ATCC 43644]
Length = 295
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 96/235 (40%), Gaps = 27/235 (11%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+ + + KI + A RP S LVAV+K ++ + + G F EN Q K
Sbjct: 52 NVAMVRGKIAEAESRAGRPAGSARLVAVTKYWPAEWLAPLAALGADTFGENHPQAVWSK- 110
Query: 66 IPLRKEW--------DVQLRFIGSLQSNKVSEIVSLFDVIETVSR-------EKTASLLS 110
+P W + IG LQSNK + + ++I V ++ A+ +
Sbjct: 111 VPALASWRGPDGEILTIHWHLIGHLQSNKARRTLPMVEMIHGVDSLKLLKTLDQLAANVG 170
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN- 169
V +QVN E K G +++ GLM + A+G
Sbjct: 171 TATTTSHPLARVCLQVNLSGEASKHGWSAEGLMADAQEIAALRSISIVGLMTMA-ALGTD 229
Query: 170 ---PKPHFYLLSEI------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+P F L E+ A L +LSMGM+ D+E A+ +G+T VRIGS +
Sbjct: 230 TRTARPTFEALRELRDRFAQASGLTLPELSMGMSNDYEAAVEAGSTLVRIGSALI 284
>gi|52353469|gb|AAU44036.1| unknown protein [Oryza sativa Japonica Group]
Length = 191
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 96/212 (45%), Gaps = 52/212 (24%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRK 70
+ + +A + R +SV +VAVSK IR G F EN +QE K +P
Sbjct: 20 RAQQAAARSGRAPESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELIDKASQLPEDI 79
Query: 71 EWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQV 126
EW FIG+LQSNK + V D++E+V +K A+ L + R L V +Q
Sbjct: 80 EW----HFIGNLQSNKARALLAGVPNLDMVESVDDQKIANRLDRVVADLGRKPLKVLVQA 135
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL 186
+ N K+ +C++ +G P+ +C
Sbjct: 136 -----------LANCRKE---VCKE---------------LGIPE----------EQC-- 154
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 155 -ELSMGMSADFEQAIEMGSTNVRVGSTIFGAR 185
>gi|320334219|ref|YP_004170930.1| hypothetical protein Deima_1616 [Deinococcus maricopensis DSM
21211]
gi|319755508|gb|ADV67265.1| protein of unknown function UPF0001 [Deinococcus maricopensis DSM
21211]
Length = 209
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 13/194 (6%)
Query: 27 SVSLVAVSKMVDSKKI-RVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQS 84
S LVA++K ++I L G EN+ QE + K L ++W FIG LQ
Sbjct: 23 SARLVAITKGHSVEEITEHVLQHGTFPLGENRGQELRDKARALPGQDW----HFIGPLQR 78
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK+ + + ++ T+ A ++ R V +QV+ G E QK G+ +
Sbjct: 79 NKIKYLAPV-TLVHTLEVAWQAEEIARHAEAWGRAPDVLLQVSNG-ERQKHGVSAENLRA 136
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI---ARECKLTKLSMGMTRDFELAI 201
RQ LNV GLM + P +P + ++ A + L++LSMGM+ D+ A+
Sbjct: 137 LYDQVRQT-GLNVRGLMVMAP-YDDPAAARAVFADTQARAHDLGLSELSMGMSDDYPEAV 194
Query: 202 ASGATSVRIGSGIF 215
GAT VR+G +F
Sbjct: 195 RYGATLVRVGRALF 208
>gi|84994852|ref|XP_952148.1| proline synthetase associated protein [Theileria annulata strain
Ankara]
gi|65302309|emb|CAI74416.1| proline synthetase associated protein, putative [Theileria
annulata]
Length = 205
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 96/201 (47%), Gaps = 26/201 (12%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD--VQLRFIGSLQS 84
V L+ V+K + I GQ+ F EN++QE +K +E D ++ FIG LQS
Sbjct: 18 GVELLVVTKNCEKTLINELYKLGQINFGENRVQELYEK----SRELDSTIKWHFIGHLQS 73
Query: 85 NKVSEIVSL--FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
NK +++ + +I+++ + +LL L+ K +R + V IQVNT +T
Sbjct: 74 NKCGKLLEVPNLYMIQSLDSLELCNLLILKTEKLNREINVLIQVNTTL----------KT 123
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE----CKLTK----LSMGMT 194
+V + +L GLM I ++ + E CK +SMGM+
Sbjct: 124 TQYVTRILESQRLKFCGLMTIGDGGIECFQRLNMIKNVLMEQFIQCKGLGDEFIMSMGMS 183
Query: 195 RDFELAIASGATSVRIGSGIF 215
D++LAI G+ +RIGS IF
Sbjct: 184 NDYKLAIQMGSNHIRIGSLIF 204
>gi|323356254|gb|EGA88058.1| YBL036C-like protein [Saccharomyces cerevisiae VL3]
Length = 247
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNKV 87
L+ VSK+ + I++ G F EN +QE K K +P D++ FIG LQ+NK
Sbjct: 44 LLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPD----DIKWHFIGGLQTNKC 99
Query: 88 SEIVSLFDV--IETVSREKTASLLSLEMIK-QSRFLPVY--IQVNTGYEIQKSGIMPNQT 142
++ + ++ +ET+ K A L+ K Q P+ +Q+NT E QKSG + N+
Sbjct: 100 KDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSREDQKSG-LNNEA 158
Query: 143 K-----DFVILCRQKYQLNVEGLMCIPP---AMGNPKPH--FYLLSEIARECKLT----- 187
+ DF + KY + + GLM I + + K + F L E ++
Sbjct: 159 EIFEVIDFFLSEECKY-IKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTSL 217
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIF 215
KLSMGM+ DF AI G VRIG+ IF
Sbjct: 218 KLSMGMSADFREAIRQGTAEVRIGTDIF 245
>gi|145223580|ref|YP_001134258.1| alanine racemase domain-containing protein [Mycobacterium gilvum
PYR-GCK]
gi|145216066|gb|ABP45470.1| alanine racemase domain protein [Mycobacterium gilvum PYR-GCK]
Length = 279
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 105/233 (45%), Gaps = 20/233 (8%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW- 65
L + ++ +A A R + L+ V K + + G FAE++ QEA K
Sbjct: 13 LDALRVRLARAAESAGRDVAEIELLPVIKFFPASDVLALYRLGCDAFAESRDQEATAKIE 72
Query: 66 -----IPLRKEWDVQLRFIGSLQSNKVSEIVSL------FDVIETVSREKTASLLSLEMI 114
+ R++ ++ +G +Q NK + D ++ V+ + ++ +LE
Sbjct: 73 DVARVVGSREDTPIRWHMVGRIQRNKARSVAEWAYAAHSVDSVKVVAALERSASTALEEG 132
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC---RQKYQLNVEGLMCIPPAMGNPK 171
+++ L V+ Q++ + + G+ + T+ LC + L G+M IPP +P
Sbjct: 133 RRTEPLRVFAQLSLDGDEARGGVDVDATERVDELCAAMDRAGGLTFAGMMAIPPLGADPG 192
Query: 172 PHFYLLSE----IARECKLT-KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L + + R+ + LS GM+ D E A+ G+T VR+G+ + G RP
Sbjct: 193 EAFARLRQERDRVQRDYEQRLGLSAGMSGDLEAAVRHGSTCVRVGTALMGSRP 245
>gi|269215871|ref|ZP_06159725.1| pyridoxal phosphate enzyme, YggS family [Slackia exigua ATCC
700122]
gi|269130821|gb|EEZ61897.1| pyridoxal phosphate enzyme, YggS family [Slackia exigua ATCC
700122]
Length = 232
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 103/231 (44%), Gaps = 19/231 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L ++ + ++ ++ + R +V ++ VSK VD + A++ G F EN+ E
Sbjct: 1 MALKDRYDAIRTQVADACAASGRDASAVRIIGVSKTVDVDAVAEAVAAGIHDFGENRPDE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K E W FIG++QS + ++V +I ++ R A +
Sbjct: 61 LARKHDAFPSERW----HFIGNIQSRHLKDVVGRACLIHSLYRPSHADKIDRLADAAGIV 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP--AMGNPKPHFYLL 177
V I+VN G E K G+ ++ + C + V GLM + P + F L
Sbjct: 117 QDVLIEVNDGEE-NKQGLSASELPAMIEHCFGLAHVRVRGLMMMAPKDSPEEADASFARL 175
Query: 178 SEIARECK-----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ I E + L +LSMGM+ D+ AI G+T VRIG IF +
Sbjct: 176 ACIREEMRQRFGAQGLTLDLDELSMGMSDDYLQAIPYGSTMVRIGRAIFSD 226
>gi|289705620|ref|ZP_06502010.1| pyridoxal phosphate enzyme, YggS family [Micrococcus luteus SK58]
gi|289557670|gb|EFD50971.1| pyridoxal phosphate enzyme, YggS family [Micrococcus luteus SK58]
Length = 262
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 33/219 (15%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR-------KEWDVQLRFIGS 81
+LV V+K ++ + + G EN+ QEA+ K + W F+G
Sbjct: 44 ALVVVTKTHPAEDVVRLAALGVTDVGENRDQEARPKAEAVAAALGADAPRW----HFVGQ 99
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP--------VYIQVNTGYEIQ 133
LQ+NK +V V+E+V R A LS ++ + P +QV+
Sbjct: 100 LQTNKAKYVVRYASVVESVDRPDLAEALSRALLLRREREPEAAIPDLECLVQVDVDDRAD 159
Query: 134 ---------KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA--- 181
+ G P + L + GLMC+ P +P+ F L+ +
Sbjct: 160 EDRPEGIGPRGGARPEDVPALADVVAGLPGLRLGGLMCVAPRGLDPEDAFRRLAALGAGL 219
Query: 182 --RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ T LSMGM+ D E A+ +GAT VRIGS + G R
Sbjct: 220 RQTHPEATTLSMGMSADLEAAVRAGATQVRIGSDVLGAR 258
>gi|322388908|ref|ZP_08062500.1| cell division protein YlmE [Streptococcus infantis ATCC 700779]
gi|321140291|gb|EFX35804.1| cell division protein YlmE [Streptococcus infantis ATCC 700779]
Length = 223
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 24/226 (10%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N QVF+Q + + R SVS++AV+K VD + G EN++ + +K
Sbjct: 6 NTNQVFQQ-VTKAIQETGREDGSVSVIAVTKYVDIVTAANLIDQGVKHIGENRVDKFLEK 64
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ L + V IGSLQ KV +++ D + K A + + R + ++
Sbjct: 65 YHALSDKG-VTWHLIGSLQRRKVKDVIPFVDYFHALDSLKLAQEIQK---RADRTVKCFL 120
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVN E K G + + Q+ GLM + P + L +I +E
Sbjct: 121 QVNISGEESKHGFSKEELLTVLPDLSSLDQIEYVGLMTMAPFEAQTEE----LQKIFKET 176
Query: 185 K---------------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QELQQYIREQQFPNMPMTELSMGMSRDYKEAIQCGSTFVRIGTAFF 222
>gi|315443927|ref|YP_004076806.1| pyridoxal phosphate enzyme, YggS family [Mycobacterium sp. Spyr1]
gi|315262230|gb|ADT98971.1| pyridoxal phosphate enzyme, YggS family [Mycobacterium sp. Spyr1]
Length = 279
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 100/219 (45%), Gaps = 20/219 (9%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW------IPLRKEWDV 74
A R + L+ V+K + + G FAE++ QEA K + R++ +
Sbjct: 27 AGRDVAEIELLPVTKFFPASDVLALYRLGCDAFAESRDQEATAKIEDVARVVGSREDTPI 86
Query: 75 QLRFIGSLQSNKVSEIVSL------FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
+ +G +Q NK + D ++ V+ + ++ +LE +++ L V+ Q++
Sbjct: 87 RWHMVGRIQRNKARSVAEWAYAAHSVDSVKVVAALERSASTALEEGRRTEPLRVFAQLSL 146
Query: 129 GYEIQKSGIMPNQTKDFVILC---RQKYQLNVEGLMCIPPAMGNPKPHFYLLSE----IA 181
+ + G+ + T+ LC + L G+M IPP +P F L + +
Sbjct: 147 DGDEARGGVDVDATERVDELCAAMDRAGGLTFAGMMAIPPLGADPGEAFARLRQERDRVQ 206
Query: 182 RECKLT-KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
R+ + LS GM+ D E A+ G+T VR+G+ + G RP
Sbjct: 207 RDYEQRLGLSAGMSGDLEAAVRHGSTCVRVGTALMGSRP 245
>gi|302528453|ref|ZP_07280795.1| pyridoxal-5'-phosphate dependent enzyme [Streptomyces sp. AA4]
gi|302437348|gb|EFL09164.1| pyridoxal-5'-phosphate dependent enzyme [Streptomyces sp. AA4]
Length = 278
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R +D V L+ V+K + + G + AEN+ QEA
Sbjct: 44 LAASLAAVEERIARACAEAGRSRDEVRLLGVTKTFPAADAALLTDLGLLDLAENRDQEAG 103
Query: 63 KKWIP---LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI----- 114
K LR + + +G LQ NK +V +++V + A L+ +
Sbjct: 104 PKAAEVAELRPDVAPRWHMVGRLQRNKARSVVRWAAEVQSVDSARLADALARAVAAAREA 163
Query: 115 -KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH 173
+++ L V +QV+ ++ + G ++ +L + G+M + P +P
Sbjct: 164 GERTGPLDVLVQVSLDGDVARGGTPLDEVGALADRIAHTGELRLRGVMAVAPLGEDPAAA 223
Query: 174 FYLLSEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F LS A R + +S GM+ D + AI G+T VR+G+ + G R
Sbjct: 224 FARLSHAAERVRDRHPEAADVSAGMSHDLDQAIRHGSTCVRVGTALLGGR 273
>gi|149247854|ref|XP_001528315.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448269|gb|EDK42657.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 278
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 113/234 (48%), Gaps = 27/234 (11%)
Query: 11 KQKIENSAILAKRPKD---SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKW 65
K+ I+N + K+ D LVAVSK+ S I + G F EN +QE AK +
Sbjct: 42 KELIDNYNAVLKQVHDLNPKTRLVAVSKLKPSSDIMALYAAGVRHFGENYVQELVAKSQE 101
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQS-RFLP 121
+P D+ FIG +Q K ++ VS +ET+ K L+ +K +
Sbjct: 102 LP----KDICWHFIGGMQLGKAKDLSNKVSNLYAVETIDTFKKCKQLNSTRVKNDGEIIN 157
Query: 122 VYIQVNTGYEIQKSGIMPN----QTKDFVILCRQKYQLNVEGLMCIPP------AMGNPK 171
VY+QVNT E QKSG + +T F++ ++ +L + GLM I A G +
Sbjct: 158 VYLQVNTSGEEQKSGFIDENDMEETIKFLLNDQECSKLKLAGLMTIGSFAESTGAQGENQ 217
Query: 172 PHFYLLSEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + +LSMGM+ DFE AI G++SVR+GS IFG RP +
Sbjct: 218 DFKKLQELKKKLDEQYSLDLELSMGMSNDFEQAIKQGSSSVRVGSSIFGARPTK 271
>gi|283470399|emb|CAQ49610.1| protein YlmE [Staphylococcus aureus subsp. aureus ST398]
Length = 168
Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 28/172 (16%)
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF-L 120
KK+ +P D + FIGSLQS KV ++++ D + R A E+ K++ +
Sbjct: 7 KKEALP----SDAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAK----EINKRAEHKI 58
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K GI F+ ++ ++ + GLM + P + Y+ S +
Sbjct: 59 KCFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEA---YIRS-L 114
Query: 181 ARECKLTK---------------LSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ +L K LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 115 FKQLRLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGE 166
>gi|297603837|ref|NP_001054662.2| Os05g0150000 [Oryza sativa Japonica Group]
gi|255676024|dbj|BAF16576.2| Os05g0150000 [Oryza sativa Japonica Group]
Length = 214
Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 95/207 (45%), Gaps = 26/207 (12%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRK 70
+ + +A + R +SV +VAVSK IR G F EN +QE K +P
Sbjct: 15 RAQQAAARSGRAPESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELIDKASQLPEDI 74
Query: 71 EWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQV 126
EW FIG+LQSNK + V D++E+V +K A+ L + R L V +QV
Sbjct: 75 EW----HFIGNLQSNKARALLAGVPNLDMVESVDDQKIANRLDRVVADLGRKPLKVLVQV 130
Query: 127 NTGYEIQKSGIMPNQ----TKDFVILCRQKYQLNVEGLMCIPPAMGNPKP-HFYLLSEIA 181
NT E K G+ P+ K + C L GLM I + P +F L+
Sbjct: 131 NTSGEESKFGVDPSGCVELAKHVKLGCP---NLVFSGLMTIGMLDYSSTPENFKALANCR 187
Query: 182 RE-CK-------LTKLSMGMTRDFELA 200
+E CK +LSMGM+ DFE A
Sbjct: 188 KEVCKELGIPEEQCELSMGMSADFEQA 214
>gi|29375580|ref|NP_814734.1| hypothetical protein EF0998 [Enterococcus faecalis V583]
gi|227517921|ref|ZP_03947970.1| alanine racemase domain protein [Enterococcus faecalis TX0104]
gi|227555108|ref|ZP_03985155.1| alanine racemase domain protein [Enterococcus faecalis HH22]
gi|229546845|ref|ZP_04435570.1| alanine racemase domain protein [Enterococcus faecalis TX1322]
gi|229548939|ref|ZP_04437664.1| alanine racemase domain protein [Enterococcus faecalis ATCC 29200]
gi|255974067|ref|ZP_05424653.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256617922|ref|ZP_05474768.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256761756|ref|ZP_05502336.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256852651|ref|ZP_05558022.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256957091|ref|ZP_05561262.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256960182|ref|ZP_05564353.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|257077887|ref|ZP_05572248.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|257081251|ref|ZP_05575612.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|257083909|ref|ZP_05578270.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|257086357|ref|ZP_05580718.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|257089407|ref|ZP_05583768.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257415617|ref|ZP_05592611.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
gi|257418588|ref|ZP_05595582.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257421247|ref|ZP_05598237.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|293382547|ref|ZP_06628481.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
R712]
gi|293387852|ref|ZP_06632391.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
S613]
gi|300860004|ref|ZP_07106092.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TUSoD Ef11]
gi|307268078|ref|ZP_07549466.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX4248]
gi|307275481|ref|ZP_07556623.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX2134]
gi|307278951|ref|ZP_07560010.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0860]
gi|307289400|ref|ZP_07569354.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0109]
gi|307290040|ref|ZP_07569964.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0411]
gi|312901043|ref|ZP_07760334.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0470]
gi|312904560|ref|ZP_07763718.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0635]
gi|312906850|ref|ZP_07765847.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
DAPTO 512]
gi|312952730|ref|ZP_07771592.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0102]
gi|312978895|ref|ZP_07790621.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
DAPTO 516]
gi|29343041|gb|AAO80804.1| conserved hypothetical protein TIGR00044 [Enterococcus faecalis
V583]
gi|227074675|gb|EEI12638.1| alanine racemase domain protein [Enterococcus faecalis TX0104]
gi|227175776|gb|EEI56748.1| alanine racemase domain protein [Enterococcus faecalis HH22]
gi|229305960|gb|EEN71956.1| alanine racemase domain protein [Enterococcus faecalis ATCC 29200]
gi|229308010|gb|EEN73997.1| alanine racemase domain protein [Enterococcus faecalis TX1322]
gi|255966939|gb|EET97561.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256597449|gb|EEU16625.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256683007|gb|EEU22702.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256711996|gb|EEU27033.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256947587|gb|EEU64219.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256950678|gb|EEU67310.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256985917|gb|EEU73219.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|256989281|gb|EEU76583.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|256991939|gb|EEU79241.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|256994387|gb|EEU81689.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|256998219|gb|EEU84739.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257157445|gb|EEU87405.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257160416|gb|EEU90376.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257163071|gb|EEU93031.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|291080095|gb|EFE17459.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
R712]
gi|291082699|gb|EFE19662.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
S613]
gi|295113826|emb|CBL32463.1| pyridoxal phosphate enzyme, YggS family [Enterococcus sp. 7L76]
gi|300850822|gb|EFK78571.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TUSoD Ef11]
gi|306498882|gb|EFM68376.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0411]
gi|306499655|gb|EFM69018.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0109]
gi|306504338|gb|EFM73549.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0860]
gi|306507869|gb|EFM76997.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX2134]
gi|306515719|gb|EFM84246.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX4248]
gi|310627104|gb|EFQ10387.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
DAPTO 512]
gi|310629246|gb|EFQ12529.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0102]
gi|310632073|gb|EFQ15356.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0635]
gi|311288332|gb|EFQ66888.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
DAPTO 516]
gi|311291869|gb|EFQ70425.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0470]
gi|315026974|gb|EFT38906.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX2137]
gi|315029687|gb|EFT41619.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX4000]
gi|315031716|gb|EFT43648.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0017]
gi|315034227|gb|EFT46159.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0027]
gi|315144383|gb|EFT88399.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX2141]
gi|315147949|gb|EFT91965.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX4244]
gi|315149521|gb|EFT93537.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0012]
gi|315153074|gb|EFT97090.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0031]
gi|315156847|gb|EFU00864.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0043]
gi|315157633|gb|EFU01650.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0312]
gi|315162937|gb|EFU06954.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0645]
gi|315165137|gb|EFU09154.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX1302]
gi|315168036|gb|EFU12053.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX1341]
gi|315171935|gb|EFU15952.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX1342]
gi|315173288|gb|EFU17305.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX1346]
gi|315574258|gb|EFU86449.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0309B]
gi|315577386|gb|EFU89577.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0630]
gi|315581587|gb|EFU93778.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0309A]
gi|323480237|gb|ADX79676.1| alanine racemase, N-terminal domain protein [Enterococcus faecalis
62]
gi|327534584|gb|AEA93418.1| YggS family pyridoxal phosphate enzyme [Enterococcus faecalis
OG1RF]
Length = 225
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 16/207 (7%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
++R V+++ V+K V ++ + G AEN++ + +K L K D+Q IG
Sbjct: 20 SQRSVADVTMIGVTKSVGIEEAAELVQLGVQNLAENRVDKLLEKKAGLEKFNDIQWHLIG 79
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+LQ KV I++ D + + SL + ++ + +++VN E K G
Sbjct: 80 NLQRRKVKLIINEIDYFHALD---SLSLAKEIQKRATKVIRCFVEVNITGEESKHGFRKE 136
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLT------------K 188
F+ ++ + GLM + P + + E+ +E ++T +
Sbjct: 137 DVLPFIQELADLDKIQIVGLMTMAPFGASEEVLHATFREL-KELQMTVNEKHLSFAPCTE 195
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIF 215
LSMGM+ DF +A+ GAT +RIG+ +F
Sbjct: 196 LSMGMSNDFPIAVEEGATFIRIGTALF 222
>gi|108804324|ref|YP_644261.1| hypothetical protein Rxyl_1487 [Rubrobacter xylanophilus DSM 9941]
gi|108765567|gb|ABG04449.1| Protein of unknown function UPF0001 [Rubrobacter xylanophilus DSM
9941]
Length = 240
Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 98/213 (46%), Gaps = 33/213 (15%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSL 82
+D ++ +K + ++I G + EN+ Q+ K++ EW FIG L
Sbjct: 31 RDRPRVLVATKYYEPEQISALREAGVRLVGENRAQDLIRKQELFGDAFEWH----FIGHL 86
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRFLP-----VYIQVNTGYEIQKSG 136
Q K +V +I +V S+ ++++ +R P V +QVN E K G
Sbjct: 87 QRRKAKLVVPRVSLIHSVD--------SVRLVEELARRAPEGGTDVLVQVNVSGEESKYG 138
Query: 137 IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK----------- 185
+ P + + + ++ V G M + P + +P+ Y+ +++ RE +
Sbjct: 139 VSPGEVERLLEAAAASGKVRVRGFMTLAPLVEDPEDVRYVFAQL-REIRDRLRGSWRPHF 197
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
L++LSMGM+ D+ +A+ GAT VR+G + E
Sbjct: 198 DLSELSMGMSNDYPVAVEEGATLVRVGRTLIEE 230
>gi|87303805|ref|ZP_01086531.1| hypothetical protein WH5701_00110 [Synechococcus sp. WH 5701]
gi|87281679|gb|EAQ73667.1| hypothetical protein WH5701_00110 [Synechococcus sp. WH 5701]
Length = 171
Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 6/165 (3%)
Query: 58 LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+QEA +K L + +Q FIG LQ NKV +V F VI +V A +S +++
Sbjct: 1 MQEAVEK-QALLSDLKLQWHFIGRLQRNKVRGVVKAFSVIHSVDSLALAERVSRIAVEEG 59
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAM--GNPKPHF 174
V +QV + K G+ P++ + LC L + GLM + P G +
Sbjct: 60 CCPDVLLQVKFREDPTKGGMEPSELLSAWPQLCALP-SLRLMGLMTMAPLGLEGEERQSL 118
Query: 175 YL-LSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ +A + L SMGM+ D+ A+A+G+T +R+GS +FG+R
Sbjct: 119 FVECRSLADQLGLPDCSMGMSGDWTEAVAAGSTWLRLGSAVFGQR 163
>gi|259047009|ref|ZP_05737410.1| cell division protein YlmE [Granulicatella adiacens ATCC 49175]
gi|259036328|gb|EEW37583.1| cell division protein YlmE [Granulicatella adiacens ATCC 49175]
Length = 227
Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 14/204 (6%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81
R V + V+K +++ G FAEN++++ ++ +E D+ IG
Sbjct: 23 HRLSTEVCPIVVTKNRSQDEVQEMYDLGFRHFAENRVEKLLERQEQFPQE-DIIWHLIGP 81
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQ KV ++++ D+ + R S++S + + L +++N E K G P +
Sbjct: 82 LQKRKVKQVINHIDLFHALDR---LSIMSEIDKRLEQPLDCLLEINVSGEETKHGFSPEE 138
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLT----------KLSM 191
+Q +++V GLM + P + + + S +A+ K +LSM
Sbjct: 139 AFSAYKESKQYEKIHVAGLMTMAPFEASDEEIRFFFSRLAQLAKKIEEKEKLSQPLQLSM 198
Query: 192 GMTRDFELAIASGATSVRIGSGIF 215
GM+ DF +AI GAT +RIG+ F
Sbjct: 199 GMSGDFPIAIQCGATYIRIGTSWF 222
>gi|256962576|ref|ZP_05566747.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|307272012|ref|ZP_07553278.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0855]
gi|256953072|gb|EEU69704.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|306511307|gb|EFM80311.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0855]
Length = 225
Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 22/210 (10%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
++R V+++ V+K V ++ + G AEN++ + +K L K D+Q IG
Sbjct: 20 SQRSVADVTMIGVTKSVGIEEAAELVQLGVQNLAENRVDKLLEKKAGLEKFNDIQWHLIG 79
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+LQ KV I++ D + + SL + ++ + +++VN E K G
Sbjct: 80 NLQRRKVKLIINEIDYFHALD---SLSLAKEIQKRATKVIRCFVEVNITGEESKHGFRKE 136
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--------------- 185
F+ ++ + GLM + P + + +L RE K
Sbjct: 137 DVLPFIQELAYLDKIQIVGLMTMAPFGASEE----VLHATFRELKELQMTVNEKHLSFAP 192
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
T+LSMGM+ DF +A+ GAT +RIG+ +F
Sbjct: 193 CTELSMGMSNDFPIAVEEGATFIRIGTALF 222
>gi|297571031|ref|YP_003696805.1| alanine racemase [Arcanobacterium haemolyticum DSM 20595]
gi|296931378|gb|ADH92186.1| alanine racemase domain protein [Arcanobacterium haemolyticum DSM
20595]
Length = 230
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 17/157 (10%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL---EMIKQSRF---LPVYIQVNTGYE 131
IG +QSNK+S +++ D I+TV KTA ++ E + + PV IQ+N+
Sbjct: 75 MIGHVQSNKLSSAMTVADRIDTVDSLKTAQRINRRQEERVARGEATGPYPVLIQINSAAA 134
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYLLSEIARECKL-- 186
+ G+ + ++ + G+M I A G N + F ++ E +
Sbjct: 135 DTQFGVAIGDVMQLAVAIADLPRVQIRGVMTIG-ARGSETNIRASFATTRRLSEEMRTLP 193
Query: 187 -----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+SMGM+ D LAI+ GAT VR+G+ +FGER
Sbjct: 194 ALADADVISMGMSNDMHLAISEGATVVRVGTAVFGER 230
>gi|74144222|dbj|BAE22181.1| unnamed protein product [Mus musculus]
Length = 326
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 109/225 (48%), Gaps = 28/225 (12%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ S +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 5 LGVGFALRAVNERVQQS--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 62
Query: 57 KLQEA-KKKWIP--LRKEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSL 111
+QE +K P L +++ FIG LQ V++++++ ++ETV K A ++
Sbjct: 63 YVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETVDSVKLADKVNS 122
Query: 112 EMIKQSRFLP--VYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAMG 168
K+ P V +Q+NT E K G++P++T V + L GLM I + G
Sbjct: 123 SWQKKGPTEPLKVMVQINTSGEDSKHGLLPSETIAVVEHIKASCPSLEFVGLMTI-GSFG 181
Query: 169 N-----PKPHFYLLSEIARE--------CKLTKLSMGMTRDFELA 200
+ P P F L + RE + +LSMGM+ DF+ A
Sbjct: 182 HDLSQGPNPDFQRLLTLRRELCEKLGIPVEQVELSMGMSMDFQHA 226
>gi|289450556|ref|YP_003475004.1| pyridoxal phosphate enzyme, YggS family [Clostridiales genomosp.
BVAB3 str. UPII9-5]
gi|289185103|gb|ADC91528.1| pyridoxal phosphate enzyme, YggS family [Clostridiales genomosp.
BVAB3 str. UPII9-5]
Length = 323
Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 109/278 (39%), Gaps = 62/278 (22%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-- 60
L +L V +QKI + AKR V L+AV+K ++I+ L + EN+ QE
Sbjct: 40 LRERLDVVQQKIVAACAAAKRDPREVRLIAVTKTKSLEEIKPLLELEIYDWGENRCQEML 99
Query: 61 ---------------AKKKWIPLRK------------------EWDVQLRFIGSLQSNKV 87
K+ I LR+ + + IGSLQ NKV
Sbjct: 100 SKQAELTEFDLAAGPGKRAEIELREAASENSGRPGQTQANVVADNPINWHLIGSLQKNKV 159
Query: 88 SEIVSLFDVIETVSREK-----TASLLSLEMIKQSRFL-PVYIQVNTGYEIQKSGIMPNQ 141
V +I +V + A L F PV ++VN E K G P
Sbjct: 160 KYAVGKTCLIHSVDSLELLLAINARAAKLAQAGADAFCQPVLLEVNYSGETSKHGFAPTA 219
Query: 142 TKDFVILCR--QKYQLNVEGLMCIPPAMGNP------------------KPHFYLLS-EI 180
+ + + + ++GLM + P P K H + + E+
Sbjct: 220 IAEILSSLKPGDVSNIRIDGLMTVAPKDAAPAALIEIFNGVRNLRDHLNKSHPWSDTPEL 279
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L +LSMGM+ D+ LAI +GAT +R+G+ + G R
Sbjct: 280 NKAVNLRELSMGMSHDYPLAIEAGATMIRLGTVLLGPR 317
>gi|221054658|ref|XP_002258468.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|193808537|emb|CAQ39240.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 242
Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 46/224 (20%)
Query: 30 LVAVSKMVDSKKIR-VALSCGQVIFAENKLQ--EAKKKWIPLRKEWDVQLRFIGSLQSNK 86
++ V+K V S++I + + F EN L+ E K K +P +W FIG+LQS K
Sbjct: 28 ILIVTKYVGSEEINNIHAYDKKYHFGENSLEALEEKAKKLPDTIKW----HFIGNLQSKK 83
Query: 87 VSEIVSL--FDVIETVSREKTASLLS--LEMIK--------QSRFLPVYIQVNTGYEIQK 134
+ +L ++ET+ ++K A +L+ L+ I Q++ + V +Q+ T + K
Sbjct: 84 CKVLANLKNLHMVETLDKQKKAIMLNNYLKSINETEQRSSNQAKKIRVLMQIKTTDDPNK 143
Query: 135 SGIMPNQTKDF--VILCRQKYQLN------VEGLMCIPP-AMGNPKPHFYLLSEIA---- 181
+GI N D IL Y +N +GLM I + N + F +L++I
Sbjct: 144 TGIGHNNYDDIESTIL----YIINNCEFLIFKGLMTISSLEIANRENSFVILNDIKSRLL 199
Query: 182 ---------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
R+ K +SMGM+ D ELAI T +RIGS IFG
Sbjct: 200 SNAVIRDYFRDRKF-HMSMGMSGDLELAIKHRTTQLRIGSAIFG 242
>gi|229157479|ref|ZP_04285556.1| hypothetical protein bcere0010_36610 [Bacillus cereus ATCC 4342]
gi|228625929|gb|EEK82679.1| hypothetical protein bcere0010_36610 [Bacillus cereus ATCC 4342]
Length = 153
Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 20/154 (12%)
Query: 77 RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF---LPVYIQVNTGYEIQ 133
FIGSLQ+ KV EI++ D + ++ R LSL Q R + +IQV T E
Sbjct: 4 HFIGSLQTRKVKEIINEIDYLHSLDR------LSLAKEIQKRADKKVKCFIQVKTSSEES 57
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP------HFYLLSEIARECKL- 186
K G+ +T F+ ++ ++ V GLM + P + +L +E +L
Sbjct: 58 KQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQAEVQELELL 117
Query: 187 ----TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 118 HAPCKELSMGMSNDYTIAIEEGATYIRLGTILVG 151
>gi|118470091|ref|YP_888497.1| hypothetical protein MSMEG_4220 [Mycobacterium smegmatis str. MC2
155]
gi|118171378|gb|ABK72274.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
155]
Length = 291
Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 17/216 (7%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRF- 78
A R + L+ V+K I + G + F E++ QEA K +R E D +R+
Sbjct: 44 AGRNVGEIELLPVTKFFPGSDIVILNQLGCLSFGESREQEAANKIAEVRAELPDAPIRWH 103
Query: 79 -IGSLQSNKVSEIVSLFDVIETVSREKTASLL------SLEMIKQSRFLPVYIQVNTGYE 131
IG +Q NK + +V + + L +L +S L VY+Q++ +
Sbjct: 104 MIGRIQRNKARAVAGWAYAAHSVDNARLIAALDRGAADALGRGVRSEPLRVYLQISLDGD 163
Query: 132 IQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY-LLSEIARECKLT 187
++ G+ P+ + L GLM IPP + F L +E R K
Sbjct: 164 AERGGVDIGDPDLVDELCAAIDGADGLTFTGLMAIPPLGADADEAFARLAAERDRVQKAY 223
Query: 188 ----KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++S GM+ D E A+ G+T VR+G+ + G RP
Sbjct: 224 PQRLEMSAGMSNDLESAVKHGSTCVRVGTALMGPRP 259
>gi|289640980|ref|ZP_06473150.1| alanine racemase domain protein [Frankia symbiont of Datisca
glomerata]
gi|289509295|gb|EFD30224.1| alanine racemase domain protein [Frankia symbiont of Datisca
glomerata]
Length = 321
Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 8/149 (5%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN---TGYEIQK 134
F+G LQ NK + +++V R + L+ + R + V +QV+ G + +
Sbjct: 169 FVGQLQRNKARPVARWAGWVQSVDRAPLVNALAAGALAHDREIVVCLQVSLDPPGCDTGR 228
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA----REC-KLTKL 189
G P L L + G+M + P +P F L E++ RE + + +
Sbjct: 229 GGARPADVLALGDLVAASRGLVLAGVMGVAPRGLPARPAFARLREVSWMLRREHPEASVI 288
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
S GM+ DF A+A GAT +RIG+ +FG R
Sbjct: 289 SAGMSADFPDAVAEGATHLRIGTALFGPR 317
>gi|228987045|ref|ZP_04147170.1| hypothetical protein bthur0001_37190 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228772639|gb|EEM21080.1| hypothetical protein bthur0001_37190 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 153
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 77/156 (49%), Gaps = 24/156 (15%)
Query: 77 RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF---LPVYIQVNTGYEIQ 133
FIGSLQ+ KV EI++ D + ++ R LSL Q R + +IQV T E
Sbjct: 4 HFIGSLQTRKVKEIINEIDYLHSLDR------LSLAKEIQKRADKKVKCFIQVKTSSEES 57
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARE------- 183
K G+ +T F+ ++ ++ V GLM + P G + F L + E
Sbjct: 58 KQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEGEIRRCFKELRMLQAEVQELELL 117
Query: 184 ---CKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
CK +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 118 HAPCK--ELSMGMSNDYTIAIEEGATYIRLGTILVG 151
>gi|119494577|ref|ZP_01624710.1| hypothetical protein L8106_15824 [Lyngbya sp. PCC 8106]
gi|119452083|gb|EAW33294.1| hypothetical protein L8106_15824 [Lyngbya sp. PCC 8106]
Length = 193
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 2/141 (1%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
DSV +VAV+K V + IR+A + G F EN++ EA +K L+ D+ IG +QSN
Sbjct: 18 DSVRIVAVTKTVSVEAIRIAYAAGIRDFGENRISEAMEKQEQLQDLSDITWHLIGHIQSN 77
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP-VYIQVNTGYEIQKSGIMPNQTKD 144
K + V F I +V K A L + ++S P V +QV + K G ++ +
Sbjct: 78 KAIKAVQHFQWIHSVDSLKLAQRLD-RLAQESDCQPQVCLQVKILTDPNKYGWTVSELLE 136
Query: 145 FVILCRQKYQLNVEGLMCIPP 165
+ Q Q+ ++GLM IPP
Sbjct: 137 DLAELNQCQQIQIKGLMTIPP 157
>gi|167740075|ref|ZP_02412849.1| hypothetical protein Bpse14_18583 [Burkholderia pseudomallei 14]
Length = 152
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +QE+
Sbjct: 4 LAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQESI 63
Query: 63 KK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K LR E ++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 64 DKISTLADLRAE--LEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLPP 121
Query: 120 LPVYIQVNTGYEIQKSGIMP 139
L V +QVN E KSG+ P
Sbjct: 122 LNVCVQVNISGEASKSGVAP 141
>gi|167721105|ref|ZP_02404341.1| hypothetical protein BpseD_19001 [Burkholderia pseudomallei DM98]
Length = 151
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +QE+
Sbjct: 4 LAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQESI 63
Query: 63 KK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K LR E ++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 64 DKISTLADLRAE--LEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLPP 121
Query: 120 LPVYIQVNTGYEIQKSGIMP 139
L V +QVN E KSG+ P
Sbjct: 122 LNVCVQVNISGEASKSGVAP 141
>gi|167825700|ref|ZP_02457171.1| hypothetical protein Bpseu9_18657 [Burkholderia pseudomallei 9]
Length = 155
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 72/141 (51%), Gaps = 5/141 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +QE+
Sbjct: 3 DLAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQES 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K LR E ++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 63 IDKISTLADLRAE--LEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMP 139
L V +QVN E KSG+ P
Sbjct: 121 PLNVCVQVNISGEASKSGVAP 141
>gi|167847186|ref|ZP_02472694.1| hypothetical protein BpseB_18067 [Burkholderia pseudomallei B7210]
Length = 158
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 72/141 (51%), Gaps = 5/141 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +QE+
Sbjct: 3 DLAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQES 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K LR E ++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 63 IDKISTLADLRAE--LEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMP 139
L V +QVN E KSG+ P
Sbjct: 121 PLNVCVQVNISGEASKSGVAP 141
>gi|167895771|ref|ZP_02483173.1| hypothetical protein Bpse7_18666 [Burkholderia pseudomallei 7894]
Length = 151
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +QE+
Sbjct: 4 LAARLASVHRRIDEAARAAGRAPGSVALLAVSKTFPADAVRAAYAAGQRAFGENYVQESI 63
Query: 63 KK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K LR E ++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 64 DKISTLADLRAE--LEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLPP 121
Query: 120 LPVYIQVNTGYEIQKSGIMP 139
L V +QVN E KSG+ P
Sbjct: 122 LNVCVQVNISGEASKSGVAP 141
>gi|71030978|ref|XP_765131.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352087|gb|EAN32848.1| hypothetical protein, conserved [Theileria parva]
Length = 215
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 98/201 (48%), Gaps = 17/201 (8%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V L+ V+K I GQ+ F E++++E +K L + V+ FIG LQ+NK
Sbjct: 18 GVELLVVTKNCTVDAIGQLFKMGQLDFGESRVRELCEKAAQL--DSTVKWHFIGHLQTNK 75
Query: 87 VSEIVSL--FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
++++ + +I++V + + LS K +R + V IQVNT + + GI
Sbjct: 76 CAKLLQIPNLHMIQSVDSMELFNKLSQLTTKLNRQINVLIQVNTTLKPTQYGIDYRNITL 135
Query: 145 FVILCR---QKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK-------LSMGMT 194
+ L R + ++ GLM I K F+ L+ + + + +SMGM+
Sbjct: 136 IISLVRSVMRSERVKFRGLMTIGDG---TKDSFHRLNGVKKRLEEEFGELGEFVMSMGMS 192
Query: 195 RDFELAIASGATSVRIGSGIF 215
D++LAI G+ +RIG+ IF
Sbjct: 193 SDYKLAIQMGSNHIRIGTLIF 213
>gi|296166015|ref|ZP_06848467.1| alanine racemase domain protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898636|gb|EFG78190.1| alanine racemase domain protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 262
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 95/240 (39%), Gaps = 23/240 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + G E++ QEA
Sbjct: 18 LTHALAAVRSRLAAAAEAAGRNVGEIELLPITKFFPATDVVTLSRLGCRAVGESRDQEAS 77
Query: 63 KKWIPLRKEWDVQLR---------FIGSLQSNKVSEIVSLFDVIETVSREKTASLL---- 109
K + K R +G +Q NK + +V S L
Sbjct: 78 AKVSEVTKLLAASSRSDGPALRWHMVGHIQRNKARSVARWAHTAHSVDSLHLVSALDKGV 137
Query: 110 SLEMIKQSRFLP--VYIQVNTGYEIQKSGI---MPNQTKDFVILCRQKYQLNVEGLMCIP 164
S + + R P VYIQ++ + + G+ P + L + GLM IP
Sbjct: 138 SAAIAEGRRADPMRVYIQISLDGDASRGGVDISAPGAVDQLCAQAEEAKHLELAGLMAIP 197
Query: 165 PAMGNPKPHF-YLLSEIAR----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P +P F L +E R LS GM+ DFE+A+ G+T VR+G+ + G RP
Sbjct: 198 PLGSDPDAAFGRLRTEHLRVLQSHPNAVGLSAGMSDDFEIAVKHGSTCVRVGTALLGPRP 257
>gi|156097392|ref|XP_001614729.1| hypothetical protein [Plasmodium vivax SaI-1]
gi|148803603|gb|EDL45002.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 242
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 110/227 (48%), Gaps = 52/227 (22%)
Query: 30 LVAVSKMVDSKKIR-VALSCGQVIFAENKLQ--EAKKKWIPLRKEWDVQLRFIGSLQSNK 86
++ SK V S++I + + + F EN L+ E K + +P +W FIG+LQS K
Sbjct: 28 ILIASKYVGSEEINNIHVYDKKYHFGENSLEALEEKARQLPDTIKW----HFIGNLQSKK 83
Query: 87 VSEIVSL--FDVIETVSREKTASLLS--LEMIK--------QSRFLPVYIQVNTGYEIQK 134
+ +L ++E++ ++K A+LL+ L+ I Q + + V +Q+ T ++ K
Sbjct: 84 CKVLANLKNLHMVESLDKQKKATLLNNYLKSINENEQRSSDQVKKIRVLMQIKTTDDLNK 143
Query: 135 SGIMPNQTKDF--VILCRQKYQLN------VEGLMCI----PPAMGNPKPHFYLLSEIA- 181
+GI +Q D IL Y +N +GLM I P + N F +L++I
Sbjct: 144 TGIAHSQYDDIESTIL----YIINNCEFLIFKGLMTISSLEPSSRENS---FVILNDIKS 196
Query: 182 ------------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
R+ K +SMGM+ D ELAI T +RIGS IFG
Sbjct: 197 RLLSNTAIRDYFRDRKF-HMSMGMSGDLELAIKHRTTQLRIGSAIFG 242
>gi|118466416|ref|YP_881546.1| hypothetical protein MAV_2342 [Mycobacterium avium 104]
gi|118167703|gb|ABK68600.1| conserved hypothetical protein [Mycobacterium avium 104]
Length = 261
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 65/156 (41%), Gaps = 14/156 (8%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLL----SLEMIKQSRFLP--VYIQVNTGYE 131
+G +Q NK + +V S L + + R P VY+QV+ +
Sbjct: 102 MVGHIQRNKARSVARWAHTAHSVDSTHLVSALDRGVAAALADGGRIDPMRVYVQVSLDGD 161
Query: 132 IQKSGI---MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK 188
+ G+ P + L++ GLM IPP +P F L R T
Sbjct: 162 ESRGGVDISRPGAVDEVCAQVAAANNLDLVGLMAIPPLNSDPDEAFDRLQSEHRRVLETH 221
Query: 189 -----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
LS GM+ DFE+A+ G+T VR+G+ + G RP
Sbjct: 222 RNAVGLSAGMSDDFEIAVKHGSTCVRVGTALLGRRP 257
>gi|68065758|ref|XP_674863.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56493711|emb|CAH99590.1| conserved protein, putative [Plasmodium berghei]
Length = 242
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 36/219 (16%)
Query: 30 LVAVSKMVDSKKIRVALSC-GQVIFAENKLQE--AKKKWIPLRKEWDVQLRFIGSLQSNK 86
++ VSK V ++I S + F EN K + +P +W FIG++QSNK
Sbjct: 28 ILIVSKYVGHEEINNIHSYEKKYHFGENNFDSLIEKSQKLPNTIKW----HFIGNIQSNK 83
Query: 87 VSEIVSLFDV--IETVSREKTASLLS--LEMIKQS--------RFLPVYIQVNTGYEIQK 134
I+ + ++ IE++ ++K ASLL+ L I ++ + L V +Q+ T + K
Sbjct: 84 CKNILKVPNLYMIESLDKQKKASLLNSYLNTINENEENNNDNLKKLRVLVQIKTTDDPNK 143
Query: 135 SGIMPNQTKDF----VILCRQKYQLNVEGLMCIPP-AMGNPKPHFYLLSEIAR------- 182
+G+M + +D + + L +GLM I + N + F +L++I
Sbjct: 144 TGMMHDNYEDIENTVLYIINNCNLLIFKGLMTISSLDINNRENSFIILNDIKNKLLNNQT 203
Query: 183 -----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ K +SMGM+ D ELAI + T +RIG IFG
Sbjct: 204 ISNYFQNKKFHMSMGMSDDLELAIKNNTTQLRIGRAIFG 242
>gi|262039205|ref|ZP_06012525.1| pyridoxal phosphate enzyme, YggS family [Leptotrichia goodfellowii
F0264]
gi|261746821|gb|EEY34340.1| pyridoxal phosphate enzyme, YggS family [Leptotrichia goodfellowii
F0264]
Length = 227
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 100/211 (47%), Gaps = 32/211 (15%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE------WDVQLRFI 79
+ V ++ V+K + ++ + + G F ENK Q + K ++ WD FI
Sbjct: 27 EKVKILFVTKYFNFEEQKKIIDMGYNYFGENKAQVYRDKVKNFSEDKYKNLKWD----FI 82
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G LQ NK+ I+ ++I ++ + ++ + + +R + IQ+N E K+G+
Sbjct: 83 GRLQKNKIKYIIKNVNLIHSIDSYELLEEINKKAAENNRIVNGLIQINISKEESKTGV-- 140
Query: 140 NQTKDFVILCRQKYQ-------LNVEGLMCIPPAMGNP---KPHFYLLSEIARECK---- 185
+V ++Y+ + ++G M + P K +F+ + + + +
Sbjct: 141 -----YVESFEKEYEKYFSMDNVKIKGFMTMAPLEAESHEIKEYFFNMLRLKEKYEKKYD 195
Query: 186 -LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L +LSMGM+ D+ A+ SG+T +RIGS +F
Sbjct: 196 YLDELSMGMSNDYIEALESGSTIIRIGSKLF 226
>gi|240168212|ref|ZP_04746871.1| hypothetical protein MkanA1_02797 [Mycobacterium kansasii ATCC
12478]
Length = 258
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 95/239 (39%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 15 LTHALAAVRSRLAAAAEAAGRNVGEIELLPITKFFPATDVVILCRLGCRAVGESREQEAS 74
Query: 63 KKWI---------PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL---- 109
K P + +G +Q NKV + +V + + L
Sbjct: 75 AKAAEVARLLAAPPRAGLGGIHWHMVGRIQRNKVRSLARWAHTAHSVDSPRLVTALDRAV 134
Query: 110 --SLEMIKQSRFLPVYIQVNTGYEIQKSGI---MPNQTKDFVILCRQKYQLNVEGLMCIP 164
+L ++ R L VY+QV+ ++ + G+ P + L + GLM IP
Sbjct: 135 TAALAERRRDRPLRVYVQVSLDGDVSRGGVDITAPGAVDEICAQVDAAPGLELVGLMGIP 194
Query: 165 PAMGNPKPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L + LS GM+ DFE A+ G+T VR+G+ + G R
Sbjct: 195 PLDWDPDEAFDRLQSEHNRVRESFPGAVGLSAGMSADFETAVKHGSTCVRVGTALLGPR 253
>gi|119583767|gb|EAW63363.1| proline synthetase co-transcribed homolog (bacterial), isoform
CRA_d [Homo sapiens]
Length = 265
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 103/241 (42%), Gaps = 69/241 (28%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 46 LGVGCALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 103
Query: 57 KLQE-----AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
+QE + K + L E ++ FIG LQ V++++
Sbjct: 104 YVQELLEKASNPKILSLCPE--IKWHFIGHLQKQNVNKLMG------------------- 142
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGN- 169
K G+ P++T V K L GLM I + G+
Sbjct: 143 ----------------------KHGLPPSETIAIVEHINAKCPNLEFVGLMTIG-SFGHD 179
Query: 170 ----PKPHFYLLSEIARE-CK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
P P F LL + E CK +LSMGM+ DF+ A+ G+T+VRIGS IFGE
Sbjct: 180 LSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFGE 239
Query: 218 R 218
R
Sbjct: 240 R 240
>gi|254775015|ref|ZP_05216531.1| hypothetical protein MaviaA2_10124 [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 261
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 14/156 (8%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLL----SLEMIKQSRFLP--VYIQVNTGYE 131
+G +Q NK + +V S L + + R P VY+QV+ +
Sbjct: 102 MVGHIQRNKARSVARWAHTAHSVDSTHLVSALDRGVAAALADGGRTDPMRVYVQVSLDGD 161
Query: 132 IQKSGIMPNQTKDFVILCRQ---KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK 188
+ G+ ++ +C Q L++ GLM IPP +P F L R T
Sbjct: 162 ESRGGVDISRPGAVDEVCAQVAAANNLDLVGLMAIPPLNSDPDEAFDRLQSEHRRVLETH 221
Query: 189 -----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
LS GM+ DFE+A+ G+T VR+G+ + G RP
Sbjct: 222 RNAVGLSAGMSDDFEIAVKHGSTCVRVGTALLGRRP 257
>gi|41407990|ref|NP_960826.1| hypothetical protein MAP1892c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41396344|gb|AAS04209.1| hypothetical protein MAP_1892c [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 264
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 14/156 (8%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLL----SLEMIKQSRFLP--VYIQVNTGYE 131
+G +Q NK + +V S L + + R P VY+QV+ +
Sbjct: 105 MVGHIQRNKARSVARWAHTAHSVDSTHLVSALDRGVAAALADGGRTDPMRVYVQVSLDGD 164
Query: 132 IQKSGIMPNQTKDFVILCRQ---KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK 188
+ G+ ++ +C Q L++ GLM IPP +P F L R T
Sbjct: 165 ESRGGVDISRPGAVDEVCAQVAAANNLDLVGLMAIPPLNSDPDEAFDRLQSEHRRVLETH 224
Query: 189 -----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
LS GM+ DFE+A+ G+T VR+G+ + G RP
Sbjct: 225 RNAVGLSAGMSDDFEIAVKHGSTCVRVGTALLGRRP 260
>gi|167465829|ref|ZP_02330918.1| hypothetical cytosolic protein [Paenibacillus larvae subsp. larvae
BRL-230010]
Length = 268
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 35/225 (15%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD----VQLRFIGSLQSN 85
L V+K S + S G EN+ QEA K L + D +Q +IG LQ+N
Sbjct: 42 LTVVTKFFPSSDVETLYSLGVRHVGENRDQEASAKATELAEITDAQDPLQWSYIGQLQTN 101
Query: 86 KVSEIVSLFDVIETVSR----EKTASLLSLEMIK-QSRFLPV-----------YIQVN-- 127
K +V + ++ R + A SL++ + +S P +QV+
Sbjct: 102 KAKSVVKYVAEVHSIDRISLAQALAKAYSLQVTRWESEEAPAPFAAVRGGLKCLVQVSLE 161
Query: 128 ------TGY--EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---YL 176
G+ E ++ G + + L G+M + P NP F Y
Sbjct: 162 DHDGSTAGHAAEGKRGGAKLDDLLKIADMLNSSAGLECSGVMAVAPLGMNPDAAFEKLYN 221
Query: 177 LSEIARECKLT--KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+S+ RE + ++S GM+ D E AI G+T+VRIGS I G RP
Sbjct: 222 ISQKLREHHPSAQEISAGMSGDLEAAIRWGSTNVRIGSKIMGARP 266
>gi|183983178|ref|YP_001851469.1| hypothetical protein MMAR_3188 [Mycobacterium marinum M]
gi|183176504|gb|ACC41614.1| conserved protein [Mycobacterium marinum M]
Length = 261
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L V + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 18 LTHALAVVRSRLAAAAEAAGRKVSEIELLPITKFFPATDVAILARLGCRAVGESRDQEAS 77
Query: 63 KKWIPLRKEWD---------VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K L + + +Q +G +Q NKV + + ++ + + L +
Sbjct: 78 AKVAELARLFSAPIRSGSRGIQWHMVGQIQRNKVRSLANWAHTAHSIDTPQLVTALDRAI 137
Query: 114 I------KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ---KYQLNVEGLMCIP 164
++ L VY+QV+ ++ + G+ +C Q L + GLM +P
Sbjct: 138 TTAIADRRRGNPLRVYVQVSLDGDVSRGGVDMTDPGAVDRICAQVSDAQSLELIGLMGVP 197
Query: 165 PAMGNPKPHF-YLLSEIARECK----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P + + F L SE +R + +LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 198 PRDWDQEKAFERLQSEHSRVLESFPTAVRLSAGMSDDLEIAVKHGSTCVRVGTALLGSR 256
>gi|124506942|ref|XP_001352068.1| Pyridoxal 5'-phosphate dependent enzyme class III, putative
[Plasmodium falciparum 3D7]
gi|23505097|emb|CAD51879.1| Pyridoxal 5'-phosphate dependent enzyme class III, putative
[Plasmodium falciparum 3D7]
Length = 242
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 33/245 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC-GQVIFAENKLQ 59
M N L+ +QK++ I +S ++ V+K V ++I S + F EN +
Sbjct: 2 MKYINNLKEIEQKVK--RICDHFSVNSPDILIVTKYVGKEEIHNIHSLDNKYHFGENSVD 59
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLS------- 110
+K L K +++ FIG+LQSNK I+ + ++ IET+ +EK A+LL+
Sbjct: 60 SLIEKSEQLAK--NIKWHFIGNLQSNKCKNILKVKNLYMIETLDKEKKATLLNNYLKIEN 117
Query: 111 --LEMIKQSRFLPVYIQVNTGYEIQKSGIMP---NQTKDFVILCRQKYQ-LNVEGLMCIP 164
++ R L V +Q+ T + K+G+ ++ ++ V+ Q L +GLM I
Sbjct: 118 ELNNNNEELRKLCVLMQIKTTDDETKTGLTHQNYDEIENTVLHIINNCQFLIFKGLMTIS 177
Query: 165 PAMGNPKPH-FYLLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRIG 211
N + + F +L++I R+ K +SMGM+ D ELAI T +RIG
Sbjct: 178 SLDINKRENSFVILNDIKRKLLSNQVINNYFLNKTFHMSMGMSDDMELAIKHETTQLRIG 237
Query: 212 SGIFG 216
IF
Sbjct: 238 RAIFN 242
>gi|253798787|ref|YP_003031788.1| hypothetical protein TBMG_01833 [Mycobacterium tuberculosis KZN
1435]
gi|254364953|ref|ZP_04980999.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|254551185|ref|ZP_05141632.1| hypothetical protein Mtube_12086 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|260187147|ref|ZP_05764621.1| hypothetical protein MtubCP_14083 [Mycobacterium tuberculosis
CPHL_A]
gi|260201262|ref|ZP_05768753.1| hypothetical protein MtubT4_14384 [Mycobacterium tuberculosis T46]
gi|260205443|ref|ZP_05772934.1| hypothetical protein MtubK8_14177 [Mycobacterium tuberculosis K85]
gi|289745421|ref|ZP_06504799.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|297731726|ref|ZP_06960844.1| hypothetical protein MtubKR_11581 [Mycobacterium tuberculosis KZN
R506]
gi|306780176|ref|ZP_07418513.1| hypothetical protein TMBG_00696 [Mycobacterium tuberculosis
SUMu002]
gi|306784921|ref|ZP_07423243.1| hypothetical protein TMCG_00244 [Mycobacterium tuberculosis
SUMu003]
gi|306789288|ref|ZP_07427610.1| hypothetical protein TMDG_00626 [Mycobacterium tuberculosis
SUMu004]
gi|306793616|ref|ZP_07431918.1| hypothetical protein TMEG_02515 [Mycobacterium tuberculosis
SUMu005]
gi|306798007|ref|ZP_07436309.1| hypothetical protein TMFG_01110 [Mycobacterium tuberculosis
SUMu006]
gi|306803886|ref|ZP_07440554.1| hypothetical protein TMHG_01338 [Mycobacterium tuberculosis
SUMu008]
gi|306808458|ref|ZP_07445126.1| hypothetical protein TMGG_00706 [Mycobacterium tuberculosis
SUMu007]
gi|306968282|ref|ZP_07480943.1| hypothetical protein TMIG_00815 [Mycobacterium tuberculosis
SUMu009]
gi|306972511|ref|ZP_07485172.1| hypothetical protein TMJG_00410 [Mycobacterium tuberculosis
SUMu010]
gi|307080220|ref|ZP_07489390.1| hypothetical protein TMKG_00410 [Mycobacterium tuberculosis
SUMu011]
gi|307084801|ref|ZP_07493914.1| hypothetical protein TMLG_03773 [Mycobacterium tuberculosis
SUMu012]
gi|308232048|ref|ZP_07414735.2| hypothetical protein TMAG_00336 [Mycobacterium tuberculosis
SUMu001]
gi|313659061|ref|ZP_07815941.1| hypothetical protein MtubKV_11596 [Mycobacterium tuberculosis KZN
V2475]
gi|134150467|gb|EBA42512.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|253320290|gb|ACT24893.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289685949|gb|EFD53437.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|308215187|gb|EFO74586.1| hypothetical protein TMAG_00336 [Mycobacterium tuberculosis
SUMu001]
gi|308326946|gb|EFP15797.1| hypothetical protein TMBG_00696 [Mycobacterium tuberculosis
SUMu002]
gi|308330381|gb|EFP19232.1| hypothetical protein TMCG_00244 [Mycobacterium tuberculosis
SUMu003]
gi|308334215|gb|EFP23066.1| hypothetical protein TMDG_00626 [Mycobacterium tuberculosis
SUMu004]
gi|308338011|gb|EFP26862.1| hypothetical protein TMEG_02515 [Mycobacterium tuberculosis
SUMu005]
gi|308341698|gb|EFP30549.1| hypothetical protein TMFG_01110 [Mycobacterium tuberculosis
SUMu006]
gi|308345188|gb|EFP34039.1| hypothetical protein TMGG_00706 [Mycobacterium tuberculosis
SUMu007]
gi|308349494|gb|EFP38345.1| hypothetical protein TMHG_01338 [Mycobacterium tuberculosis
SUMu008]
gi|308354124|gb|EFP42975.1| hypothetical protein TMIG_00815 [Mycobacterium tuberculosis
SUMu009]
gi|308358065|gb|EFP46916.1| hypothetical protein TMJG_00410 [Mycobacterium tuberculosis
SUMu010]
gi|308362003|gb|EFP50854.1| hypothetical protein TMKG_00410 [Mycobacterium tuberculosis
SUMu011]
gi|308365635|gb|EFP54486.1| hypothetical protein TMLG_03773 [Mycobacterium tuberculosis
SUMu012]
gi|323719303|gb|EGB28445.1| hypothetical protein TMMG_01428 [Mycobacterium tuberculosis
CDC1551A]
Length = 261
Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 97/239 (40%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 18 LTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEAS 77
Query: 63 KKWIPLRK---------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K L + V +G +Q NK + +V + + L +
Sbjct: 78 AKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVDSSRLVTALDRAV 137
Query: 114 I------KQSRFLPVYIQVNTGYEIQKSGI---MPNQTKDFVILCRQKYQLNVEGLMCIP 164
+ ++ L VY+QV+ + + G+ P ++ L + GLM IP
Sbjct: 138 VAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRICAQVQESEGLELVGLMGIP 197
Query: 165 PAMGNPKPHF-YLLSEIARECKL----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L SE R + LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 198 PLDWDPDEAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 256
>gi|326903765|gb|EGE50698.1| hypothetical protein TBPG_01647 [Mycobacterium tuberculosis W-148]
Length = 262
Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 97/239 (40%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 18 LTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEAS 77
Query: 63 KKWIPLRK---------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K L + V +G +Q NK + +V + + L +
Sbjct: 78 AKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVDSSRLVTALDRAV 137
Query: 114 I------KQSRFLPVYIQVNTGYEIQKSGI---MPNQTKDFVILCRQKYQLNVEGLMCIP 164
+ ++ L VY+QV+ + + G+ P ++ L + GLM IP
Sbjct: 138 VAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRICAQVQESEGLELVGLMGIP 197
Query: 165 PAMGNPKPHF-YLLSEIARECKL----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L SE R + LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 198 PLDWDPDEAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 256
>gi|15841640|ref|NP_336677.1| hypothetical protein MT2207 [Mycobacterium tuberculosis CDC1551]
gi|254232307|ref|ZP_04925634.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|13881892|gb|AAK46491.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
gi|124601366|gb|EAY60376.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length = 264
Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 97/239 (40%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 21 LTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEAS 80
Query: 63 KKWIPLRK---------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K L + V +G +Q NK + +V + + L +
Sbjct: 81 AKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVDSSRLVTALDRAV 140
Query: 114 I------KQSRFLPVYIQVNTGYEIQKSGI---MPNQTKDFVILCRQKYQLNVEGLMCIP 164
+ ++ L VY+QV+ + + G+ P ++ L + GLM IP
Sbjct: 141 VAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRICAQVQESEGLELVGLMGIP 200
Query: 165 PAMGNPKPHF-YLLSEIARECKL----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L SE R + LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 201 PLDWDPDEAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 259
>gi|215446377|ref|ZP_03433129.1| hypothetical protein MtubT_10703 [Mycobacterium tuberculosis T85]
Length = 259
Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 97/239 (40%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 15 LTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEAS 74
Query: 63 KKWIPLRK---------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K L + V +G +Q NK + +V + + L +
Sbjct: 75 AKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVDSSRLVTALDRAV 134
Query: 114 I------KQSRFLPVYIQVNTGYEIQKSGI---MPNQTKDFVILCRQKYQLNVEGLMCIP 164
+ ++ L VY+QV+ + + G+ P ++ L + GLM IP
Sbjct: 135 VAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRICAQVQESEGLELVGLMGIP 194
Query: 165 PAMGNPKPHF-YLLSEIARECKL----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L SE R + LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 195 PLDWDPDEAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 253
>gi|15609285|ref|NP_216664.1| hypothetical protein Rv2148c [Mycobacterium tuberculosis H37Rv]
gi|31793328|ref|NP_855821.1| hypothetical protein Mb2172c [Mycobacterium bovis AF2122/97]
gi|121638030|ref|YP_978254.1| hypothetical protein BCG_2165c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148661964|ref|YP_001283487.1| hypothetical protein MRA_2163 [Mycobacterium tuberculosis H37Ra]
gi|148823357|ref|YP_001288111.1| hypothetical protein TBFG_12178 [Mycobacterium tuberculosis F11]
gi|167967849|ref|ZP_02550126.1| hypothetical protein MtubH3_07376 [Mycobacterium tuberculosis
H37Ra]
gi|215403535|ref|ZP_03415716.1| hypothetical protein Mtub0_07608 [Mycobacterium tuberculosis
02_1987]
gi|215411865|ref|ZP_03420649.1| hypothetical protein Mtub9_11114 [Mycobacterium tuberculosis
94_M4241A]
gi|215431078|ref|ZP_03428997.1| hypothetical protein MtubE_10460 [Mycobacterium tuberculosis
EAS054]
gi|218753872|ref|ZP_03532668.1| hypothetical protein MtubG1_10729 [Mycobacterium tuberculosis GM
1503]
gi|219558127|ref|ZP_03537203.1| hypothetical protein MtubT1_12817 [Mycobacterium tuberculosis T17]
gi|224990524|ref|YP_002645211.1| hypothetical protein JTY_2159 [Mycobacterium bovis BCG str. Tokyo
172]
gi|289443653|ref|ZP_06433397.1| YggS family pyridoxal phosphate enzyme [Mycobacterium tuberculosis
T46]
gi|289447776|ref|ZP_06437520.1| YggS family pyridoxal phosphate enzyme [Mycobacterium tuberculosis
CPHL_A]
gi|289554065|ref|ZP_06443275.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289570264|ref|ZP_06450491.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289574831|ref|ZP_06455058.1| YggS family pyridoxal phosphate enzyme [Mycobacterium tuberculosis
K85]
gi|289754258|ref|ZP_06513636.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289758269|ref|ZP_06517647.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis T85]
gi|289762310|ref|ZP_06521688.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|297634737|ref|ZP_06952517.1| hypothetical protein MtubK4_11471 [Mycobacterium tuberculosis KZN
4207]
gi|298525643|ref|ZP_07013052.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|54040489|sp|P67084|Y2172_MYCBO RecName: Full=UPF0001 protein Mb2172c
gi|54042946|sp|P67083|Y2148_MYCTU RecName: Full=UPF0001 protein Rv2148c/MT2207
gi|2104330|emb|CAB08645.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|31618920|emb|CAD97025.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121493678|emb|CAL72153.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148506116|gb|ABQ73925.1| hypothetical protein MRA_2163 [Mycobacterium tuberculosis H37Ra]
gi|148721884|gb|ABR06509.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|224773637|dbj|BAH26443.1| hypothetical protein JTY_2159 [Mycobacterium bovis BCG str. Tokyo
172]
gi|289416572|gb|EFD13812.1| YggS family pyridoxal phosphate enzyme [Mycobacterium tuberculosis
T46]
gi|289420734|gb|EFD17935.1| YggS family pyridoxal phosphate enzyme [Mycobacterium tuberculosis
CPHL_A]
gi|289438697|gb|EFD21190.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289539262|gb|EFD43840.1| YggS family pyridoxal phosphate enzyme [Mycobacterium tuberculosis
K85]
gi|289544018|gb|EFD47666.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289694845|gb|EFD62274.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289709816|gb|EFD73832.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|289713833|gb|EFD77845.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis T85]
gi|298495437|gb|EFI30731.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|328458550|gb|AEB03973.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length = 258
Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 97/239 (40%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 15 LTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEAS 74
Query: 63 KKWIPLRK---------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K L + V +G +Q NK + +V + + L +
Sbjct: 75 AKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVDSSRLVTALDRAV 134
Query: 114 I------KQSRFLPVYIQVNTGYEIQKSGI---MPNQTKDFVILCRQKYQLNVEGLMCIP 164
+ ++ L VY+QV+ + + G+ P ++ L + GLM IP
Sbjct: 135 VAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRICAQVQESEGLELVGLMGIP 194
Query: 165 PAMGNPKPHF-YLLSEIARECKL----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L SE R + LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 195 PLDWDPDEAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 253
>gi|46107884|ref|XP_381001.1| hypothetical protein FG00825.1 [Gibberella zeae PH-1]
Length = 191
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 84/173 (48%), Gaps = 34/173 (19%)
Query: 74 VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS------LEMIKQSRFLPVYIQVN 127
+ +R G +S + +I +LF + ++ K A LL+ L + + V++QVN
Sbjct: 17 LHIRSSGHCKS--IGKIPNLF-CVSSIDTSKKAQLLNTTRANLLSSEPDAPKIGVHVQVN 73
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQ----LNVEGLMCI---------PPAMGNPKPHF 174
T E KSG P D V LCR+ + L + GLM I P N F
Sbjct: 74 TSGEESKSGCAPGD--DTVALCREIIETCSNLRLLGLMTIGAIARSKATTPETENED--F 129
Query: 175 YLLSE----IARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L E +A+E L +LSMGM+ DFE A+ G++ VR+GS IFG+RP
Sbjct: 130 VSLKEQRDLVAKELGLDPESLELSMGMSEDFEGAVRLGSSEVRVGSTIFGQRP 182
>gi|15827439|ref|NP_301702.1| DNA-binding protein [Mycobacterium leprae TN]
gi|221229916|ref|YP_002503332.1| putative DNA-binding protein [Mycobacterium leprae Br4923]
gi|13092989|emb|CAC31300.1| possible DNA-binding protein [Mycobacterium leprae]
gi|219933023|emb|CAR71014.1| possible DNA-binding protein [Mycobacterium leprae Br4923]
Length = 260
Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 98/236 (41%), Gaps = 22/236 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ ++ A R + L+ +SK + + + G E++ QEA
Sbjct: 18 LMHALATVRSRLAAASQAAGRNVGEIELLPISKFFPATDVAILSRLGCRSVGESRAQEAS 77
Query: 63 KK--------WIPLRKEWDVQLRFIGSLQSNKV------SEIVSLFDVIETVSREKTASL 108
K + ++ + +G +Q NKV + D ++ V+ A
Sbjct: 78 TKAAEFAELLGVSREEKSSIHWHMVGQIQRNKVRSLAQWAHTAHSIDSLQLVAALDRAVA 137
Query: 109 LSLEMIKQSRFLPVYIQVNTGYEIQKSGI---MPNQTKDFVILCRQKYQLNVEGLMCIPP 165
+L ++ + L VY+Q++ +I + G+ P + L + GLM IPP
Sbjct: 138 AALAGGRREQPLQVYVQISLDGDISRGGVNVTAPGAVDRVCAQVEESKSLELVGLMGIPP 197
Query: 166 AMGNPKPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
NP F L R LS GM+ DFE+A+ G+T VR+G+ + G
Sbjct: 198 LGWNPDQAFEQLRLEHRRVLRSHPDAIGLSAGMSNDFEIAVKHGSTCVRVGTALLG 253
>gi|15214403|sp|Q9CCE2|Y919_MYCLE RecName: Full=UPF0001 protein ML0919
Length = 257
Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 22/234 (9%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L + ++ ++ A R + L+ +SK + + + G E++ QEA K
Sbjct: 17 HALATVRSRLAAASQAAGRNVGEIELLPISKFFPATDVAILSRLGCRSVGESRAQEASTK 76
Query: 65 --------WIPLRKEWDVQLRFIGSLQSNKV------SEIVSLFDVIETVSREKTASLLS 110
+ ++ + +G +Q NKV + D ++ V+ A +
Sbjct: 77 AAEFAELLGVSREEKSSIHWHMVGQIQRNKVRSLAQWAHTAHSIDSLQLVAALDRAVAAA 136
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGI---MPNQTKDFVILCRQKYQLNVEGLMCIPPAM 167
L ++ + L VY+Q++ +I + G+ P + L + GLM IPP
Sbjct: 137 LAGGRREQPLQVYVQISLDGDISRGGVNVTAPGAVDRVCAQVEESKSLELVGLMGIPPLG 196
Query: 168 GNPKPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
NP F L R LS GM+ DFE+A+ G+T VR+G+ + G
Sbjct: 197 WNPDQAFEQLRLEHRRVLRSHPDAIGLSAGMSNDFEIAVKHGSTCVRVGTALLG 250
>gi|291301474|ref|YP_003512752.1| alanine racemase domain-containing protein [Stackebrandtia
nassauensis DSM 44728]
gi|290570694|gb|ADD43659.1| alanine racemase domain protein [Stackebrandtia nassauensis DSM
44728]
Length = 249
Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 17/228 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ + I + A R V LV VSK + + G F EN+ QEA
Sbjct: 17 LAENLRATRADIAAACEAAGRDPSGVELVVVSKTHPAADVCALAELGVRGFGENRDQEAA 76
Query: 63 KKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF-L 120
K + +V+ F+G LQ NK +VS ++E+V R + L E Q L
Sbjct: 77 AKAAEVAASGTEVRWHFVGRLQRNKCRSVVSYASMVESVDRSSLVTALDAEARSQRDSPL 136
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDF---VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
V +Q++ + + G+ + ++ C+ L + G+M + P P F +
Sbjct: 137 DVLMQLSVDSDTARGGVAEADDEALAAQILACQG---LRLRGVMAVAPLGWEPGRAFEAV 193
Query: 178 SEIARECKLTKL-------SMGMTRDFELAIASGATSVRIGSGIFGER 218
+ R K+ L S GM+ D+ AI+ GAT +R+GS + G R
Sbjct: 194 AR--RAAKIQALAPNANIVSAGMSADYAEAISFGATEIRLGSKLLGRR 239
>gi|215427527|ref|ZP_03425446.1| hypothetical protein MtubT9_14519 [Mycobacterium tuberculosis T92]
gi|289750744|ref|ZP_06510122.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289691331|gb|EFD58760.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length = 258
Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 97/239 (40%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 15 LTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEAS 74
Query: 63 KKWIPLRK---------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K L + V +G +Q NK + +V + + L +
Sbjct: 75 AKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVDSSRLVTALDRAV 134
Query: 114 I------KQSRFLPVYIQVNTGYEIQKSGI---MPNQTKDFVILCRQKYQLNVEGLMCIP 164
+ ++ L VY+QV+ + + G+ P ++ L + GLM IP
Sbjct: 135 VAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRVCAQVQESEGLELVGLMGIP 194
Query: 165 PAMGNPKPHF-YLLSEIARECKL----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L SE R + LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 195 PLDWDPDEAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 253
>gi|254821929|ref|ZP_05226930.1| hypothetical protein MintA_18497 [Mycobacterium intracellulare ATCC
13950]
Length = 258
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 14/155 (9%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLL------SLEMIKQSRFLPVYIQVNTGYE 131
+G +Q NK + +V + + L +L +++ + +Y+QV+ +
Sbjct: 99 MVGHIQRNKARSVACWAHTAHSVDSTQLVTALDRGVAAALAEGRRTDPMRIYVQVSLDGD 158
Query: 132 IQKSGI---MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC---- 184
+ G+ P + L++ GLM IPP +P F L R
Sbjct: 159 ESRGGVDISRPGAVDQMCAQVEEASNLDLAGLMAIPPLDSDPDEAFDRLQSEHRRVLESH 218
Query: 185 -KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LS GM+ DFE+A+ G+T VR+G+ + G R
Sbjct: 219 RNAVGLSAGMSNDFEIAVKHGSTCVRVGTALLGRR 253
>gi|331084011|ref|ZP_08333118.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
6_1_63FAA]
gi|330402373|gb|EGG81943.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
6_1_63FAA]
Length = 180
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 6/182 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++++E + A R ++ V+L+AVSK I L F ENK+QE
Sbjct: 1 MSVCENYKEVEKRVEEACKRAGRKREEVTLIAVSKTKPVSMIEELLPLNVRDFGENKVQE 60
Query: 61 --AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
AK + +P W IG LQ NKV IV +I +V + A +S K+
Sbjct: 61 LTAKAEILPSALHW----HMIGHLQRNKVKYIVDKACIIHSVDSLRLAEEISKAAQKKQV 116
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+ I+VN E K G+ ++ + + ++GLM I P + NP+ + ++
Sbjct: 117 TAKILIEVNVAEEESKFGVRTSELLPLIEAISLLPNIAIKGLMTIAPYVENPEENRWIFQ 176
Query: 179 EI 180
++
Sbjct: 177 KL 178
>gi|306832981|ref|ZP_07466113.1| YggS family pyridoxal phosphate enzyme [Streptococcus bovis ATCC
700338]
gi|304424880|gb|EFM28014.1| YggS family pyridoxal phosphate enzyme [Streptococcus bovis ATCC
700338]
Length = 191
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 33 VSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS 92
++K VDS + G EN++ K+ L K+ + IGSLQ KV +++
Sbjct: 1 MTKYVDSGVAARLIDTGIEHIGENRVDMFLDKYEAL-KDRKLTWHLIGSLQRRKVKNVIN 59
Query: 93 LFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
D + K AS E+ K++ + ++QVN E K G ++ + + +
Sbjct: 60 FVDYFHALDSIKLAS----EIQKRAEHTIKCFLQVNISEEESKHGFKVSEIDEALTAISE 115
Query: 152 KYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECK--------LTKLSMGMTRDFELA 200
++ + GLM + P + + F +++ +E + T+LSMGM+ D+++A
Sbjct: 116 FDKVEIVGLMTMAPKEASESEIEEIFGKANQLRQELQARQLPHMPFTELSMGMSGDYKIA 175
Query: 201 IASGATSVRIGSGIF 215
I +GAT VRIG+ F
Sbjct: 176 IRNGATFVRIGTSFF 190
>gi|120404490|ref|YP_954319.1| alanine racemase domain-containing protein [Mycobacterium
vanbaalenii PYR-1]
gi|119957308|gb|ABM14313.1| alanine racemase domain protein [Mycobacterium vanbaalenii PYR-1]
Length = 275
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 94/239 (39%), Gaps = 35/239 (14%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW- 65
L + ++ +A A R + L+ V+K + + G F E++ QEA K
Sbjct: 13 LTALRLRVARAAEAAGRDAGDIELLPVTKFFPASDVVALHRLGCSAFGESRDQEAAAKVE 72
Query: 66 --------IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL------SL 111
P+R W +G +Q NK + +V K + L +L
Sbjct: 73 EVGGLVGNDPIR--W----HMVGRIQRNKARSVAQWAYAAHSVDSPKVIAALDRAAEEAL 126
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC---RQKYQLNVEGLMCIPPAMG 168
+ ++ L VY+QV+ + + G+ T LC L GLM IPP
Sbjct: 127 DDGRRPAPLRVYLQVSLDGDEARGGVDVAATDRIDDLCGAVDSARGLEFVGLMAIPPLNA 186
Query: 169 NPKPHFYLLSEIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ F L RE + LS GM+ D E A+ G+T VR+G+ + G RP
Sbjct: 187 DAGEAFARLE---RERDRVQRRFQQRLGLSAGMSGDLEEAVRHGSTCVRVGTALLGSRP 242
>gi|164686340|ref|ZP_02210370.1| hypothetical protein CLOBAR_02778 [Clostridium bartlettii DSM
16795]
gi|164601942|gb|EDQ95407.1| hypothetical protein CLOBAR_02778 [Clostridium bartlettii DSM
16795]
Length = 116
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 12/107 (11%)
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ-LNVEGLMCIPPAMGNPK---PHFYLLSE 179
+QVN E K G+ + +F+ + +KY+ + + GLM + P + + + F L +
Sbjct: 6 VQVNISKEETKHGLYKDDVVEFIKMVSEKYKNIRIRGLMTMAPFVDDEEVIESVFKGLKD 65
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ E + + LSMGM+ D+ +AI +GAT VR+G+ IFG R
Sbjct: 66 LSLEVESLGLENVYMNTLSMGMSHDYHIAIKNGATIVRVGTAIFGPR 112
>gi|56541811|emb|CAD29783.1| putative proline synthetase associated protein [Oryza sativa]
Length = 220
Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
+ + +A + R +SV +VAVSK IR G F EN +QE K L +
Sbjct: 16 RAQQAAARSGRAPESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELIDKASQLPE-- 73
Query: 73 DVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSRF-LPVYIQVNT 128
D++ FIG+LQSNK + V D++E+V +K A+ L + R L V +QVNT
Sbjct: 74 DIEWHFIGNLQSNKARALLAGVPNLDMVESVDDQKIANRLDRVVADLGRKPLKVLVQVNT 133
Query: 129 GYEIQKSGIMPN 140
E K G+ P+
Sbjct: 134 SGEESKFGVNPS 145
>gi|118618790|ref|YP_907122.1| hypothetical protein MUL_3496 [Mycobacterium ulcerans Agy99]
gi|118570900|gb|ABL05651.1| conserved protein [Mycobacterium ulcerans Agy99]
Length = 258
Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 103/239 (43%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 15 LTHALALVRSRLAAAAEAAGRKVSEIELLPITKFFPATDVAILARLGCRAVGESRDQEAS 74
Query: 63 KKWIPLRKEWD---------VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K L + + +Q +G +Q NKV + + ++ + + L +
Sbjct: 75 AKVAELARMFSAPMRSGSRGIQWHMVGQIQRNKVRSLANWAHTAHSIDTPQLVTALDRAI 134
Query: 114 I------KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ---KYQLNVEGLMCIP 164
++ L V++QV+ ++ + G+ +C Q L + GLM +P
Sbjct: 135 TTAIADRRRGNPLRVHVQVSLDGDVSRGGVDMTDPGAVDRICAQVSDSQSLELIGLMGVP 194
Query: 165 PAMGNPKPHF-YLLSEIARECK----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P + + F L SE R + +LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 195 PRDWDQEKAFERLQSEHNRVLESFPTAVRLSAGMSDDLEIAVKHGSTCVRVGTALLGSR 253
>gi|116783162|gb|ABK22817.1| unknown [Picea sitchensis]
Length = 218
Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 85/180 (47%), Gaps = 9/180 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ ++++ +A + R V +VAVSK IR G F EN +QE K
Sbjct: 9 LRTVLRRVQQAAEKSGRQASQVRVVAVSKTKPVSLIREVYEAGHRYFGENYVQEILDKAP 68
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVS----LFDVIETVSREKTASLLSLEMIKQSRF-LP 121
L D+Q FIG LQSNK +++ L+ ++E+V K A+ L + R L
Sbjct: 69 ELPT--DIQWHFIGHLQSNKAKAVIAGVPNLY-MVESVDSSKVANHLDRAVSSIGRKPLK 125
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +QVNT E K G+ P++ + + Q L GLM I + +P + ++E+
Sbjct: 126 VLVQVNTSGEESKYGVEPSECVELAKHVKFQCPNLEFSGLMTIGMLDYSSRPENFEVAEL 185
>gi|295115171|emb|CBL36018.1| pyridoxal phosphate enzyme, YggS family [butyrate-producing
bacterium SM4/1]
Length = 200
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 2/163 (1%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ +++I + + R + V+L++VSK + ++ A G F EN +QE +K
Sbjct: 6 LEGVRERIRLACERSGRRVEDVTLISVSKTKPVEMLQEAYEAGSRDFGENHVQEILEKHG 65
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ + DV+ IG LQ NKV +++ +I +V A + E K+ + + ++V
Sbjct: 66 QMPE--DVRWHMIGHLQKNKVRQVIDKVVLIHSVDTVGLAEQIEKEAAKRDLDIDILLEV 123
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
N E K G P + ++ V ++++GLM I P + N
Sbjct: 124 NVAGEESKFGFCPEEVEEAVRKISLLPHVHIKGLMTIAPFVVN 166
>gi|213028404|ref|ZP_03342851.1| hypothetical protein Salmonelentericaenterica_41345 [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 119
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 4 IAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEGV 63
Query: 63 KKWIPLRKEWDVQ---LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS 110
+K I +E V+ FIG LQSNK + FD T+ R + AS LS
Sbjct: 64 EK-IRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLS 113
>gi|325115060|emb|CBZ50616.1| hypothetical protein NCLIV_010840 [Neospora caninum Liverpool]
Length = 326
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 104/272 (38%), Gaps = 83/272 (30%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V ++AVSK + + A GQ F EN +QE K LR E D++ IG LQSNKV
Sbjct: 55 VRILAVSKHHPAAAVAAAAQAGQRHFGENYVQELVDKAAQLR-ELDLEWHMIGHLQSNKV 113
Query: 88 SEIVSL---FDVIETVSREKTASLL---SLEMIKQSRFLP--VYIQVNTGYEIQKSGIM- 138
++++ +ETV +K A L + ++ Q P V +QVN E KSG+
Sbjct: 114 KQLLTACPRLYAVETVDSKKLAKTLNDAAAAVLPQRNGAPLRVLVQVNASDEESKSGVRL 173
Query: 139 -----PNQ-----TKDFVILCRQKY------QLNVEGLMCIPPAMGNPKPH-----FYLL 177
P++ + D + +Y L GLM I G+P P F L
Sbjct: 174 HANDNPDEKTAGTSGDSAVRELVEYIIDSCPHLRFSGLMTI----GDPDPERTPGTFAKL 229
Query: 178 S-------EIAR-------------------------------ECKLTKLSMGMTRDFEL 199
+ E+ R C + FEL
Sbjct: 230 AKLRLDLLELPRVRQVFAPRAENVHGRAEGKRAVQAEPPEGNEHCGDSDAERDTDERFEL 289
Query: 200 ----------AIASGATSVRIGSGIFGERPCQ 221
AI G+T VRIG+ IFG RP Q
Sbjct: 290 SMGMSGDMAEAIKHGSTEVRIGTAIFGSRPAQ 321
>gi|313223168|emb|CBY43394.1| unnamed protein product [Oikopleura dioica]
Length = 170
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 45/177 (25%)
Query: 73 DVQLRFIGSLQSNKVSEIV-----------SLFDVIETVSREKTASLLSLEMIKQSRFLP 121
D++ FIGS+Q ++ I+ + D+IE V + T+S+
Sbjct: 4 DIRFHFIGSIQKKNINSIIKAPNLVGIQTLASMDIIENVDKRLTSSV------------N 51
Query: 122 VYIQVNTGYEIQKSGIMPNQ----TKDFVILCRQKYQLNVEGLMCIPPAMGN-------- 169
+ +Q NT E K G + + +FV + + +EGLM I +
Sbjct: 52 IMLQCNTSGEENKGGFLEEEELFRAAEFV--KNESNFMKLEGLMTIGSVENSKRAAEENI 109
Query: 170 PKPHFYLLSE----IARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P F L E +A K++ LSMGM+ D+ AI GA+ +R+GS IFG R
Sbjct: 110 PNADFTRLHELRQKVAERLKISPDELSLSMGMSTDYLAAIEQGASVIRVGSKIFGAR 166
>gi|57900473|dbj|BAD87885.1| alanine racemase-like [Oryza sativa Japonica Group]
Length = 192
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 75/183 (40%), Gaps = 52/183 (28%)
Query: 42 IRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL---FDVIE 98
+R G F EN +QE K L + D++ FIG LQSNKV +++ ++E
Sbjct: 49 VRELYDAGHRCFGENYVQEFVTKAPQLPE--DIRWHFIGHLQSNKVKSLLAAVPNLHMVE 106
Query: 99 TVSREKTASLLSLEMIKQSRF-LPVYIQ--VNTGYEIQKSGIMPNQTKDFVILCRQKYQL 155
V K A+ L + R L V +Q VN E+ K+ MP +
Sbjct: 107 GVDNVKIANHLDRAVSSLGRDPLKVLVQALVNCKLEVCKAIDMPAEQ------------- 153
Query: 156 NVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+LSMGM+ DFE AI G+TSVRIGS IF
Sbjct: 154 -------------------------------FELSMGMSGDFEQAIEMGSTSVRIGSTIF 182
Query: 216 GER 218
G R
Sbjct: 183 GPR 185
>gi|238021818|ref|ZP_04602244.1| hypothetical protein GCWU000324_01722 [Kingella oralis ATCC 51147]
gi|237866432|gb|EEP67474.1| hypothetical protein GCWU000324_01722 [Kingella oralis ATCC 51147]
Length = 111
Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--------KPH 173
+ I++N + K GI P + +LN+ GLMC+ N + H
Sbjct: 1 MLIEINISGDPAKHGIAPEELPALAQAIAPLPRLNLRGLMCVASHTDNSDQLRQQFTQMH 60
Query: 174 FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + LSMGM+ D LAI GAT VRIGS IFG+R
Sbjct: 61 SLLAQLRPHAPQADTLSMGMSSDMNLAIECGATMVRIGSAIFGKR 105
>gi|258615779|ref|ZP_05713549.1| hypothetical protein EfaeD_08714 [Enterococcus faecium DO]
Length = 135
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + LQ KQ+I++S L R V+LVAV+K V+S + + G + AEN++ +
Sbjct: 2 IADNLQKIKQEIQDSCALVHRDPKEVTLVAVTKSVESAQAEELVRAGVMNCAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L +++ IG+LQ KV IV+ D + + A + + K+ L
Sbjct: 62 EKKQDLFDFPEIKWHLIGNLQRRKVKLIVNEIDYFHALDSLRLAEEIQKRLEKE---LSC 118
Query: 123 YIQVNTGYEIQKSGIMP 139
+I+VN E K GI P
Sbjct: 119 FIEVNVSGEESKHGISP 135
>gi|71015126|ref|XP_758778.1| hypothetical protein UM02631.1 [Ustilago maydis 521]
gi|46098568|gb|EAK83801.1| hypothetical protein UM02631.1 [Ustilago maydis 521]
Length = 954
Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 46/121 (38%), Positives = 65/121 (53%), Gaps = 16/121 (13%)
Query: 30 LVAVSKMVDSKKIRVAL-SCGQVIFAENKLQEA--KKKWIPLRKEWDVQLRFIGSLQSNK 86
LVA+SK+ I A GQ+ F EN +QE K K +P W F+G LQSNK
Sbjct: 219 LVAISKLHPPSAILAAYRQAGQLHFGENYVQEMVDKAKVLPREIRW----HFVGGLQSNK 274
Query: 87 ---VSEIVSLFDVIETVSREKTASLL-----SLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
++ I +L+ ++ET+ K A++L S + K+ L VY+QVNT E KSG+
Sbjct: 275 GKLLASIPNLY-LLETLDSVKAANVLQKALASPDAAKRDEPLRVYLQVNTSGEEAKSGLA 333
Query: 139 P 139
P
Sbjct: 334 P 334
Score = 38.5 bits (88), Expect = 0.59, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+LSMGM+ D ++A +G+ +VR+G+ FG RP
Sbjct: 443 ELSMGMSADMDVATMAGSDNVRVGTDCFGRRP 474
>gi|167837776|ref|ZP_02464659.1| hypothetical protein Bpse38_14902 [Burkholderia thailandensis
MSMB43]
Length = 84
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Query: 155 LNVEGLMCIPPAMGNPK----PH---FYLLSEI-ARECKLTKLSMGMTRDFELAIASGAT 206
L + GLM IP +P+ PH LL ++ A L LSMGM+ D E A+A GAT
Sbjct: 9 LRLRGLMAIPEPATDPEAKRAPHRALHALLEQLRAGGLALDTLSMGMSDDLEAAVAEGAT 68
Query: 207 SVRIGSGIFGER 218
VRIG+ IFG R
Sbjct: 69 IVRIGTAIFGAR 80
>gi|315124219|ref|YP_004066223.1| hypothetical protein ICDCCJ07001_654 [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|315017941|gb|ADT66034.1| hypothetical protein ICDCCJ07001_654 [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
Length = 159
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 76/140 (54%), Gaps = 6/140 (4%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-AKKKWIPLRKEWDVQLRFIGSLQSN 85
+V LVA SK VD+ I G V F EN++Q A+KK K+ D++ FIG+LQSN
Sbjct: 12 NVRLVAASKYVDASIIEKLFDQGIVEFGENQVQALAQKKENLDEKKLDIKWHFIGTLQSN 71
Query: 86 KVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-K 143
K++ ++ ++ + + K A + + L +++N+ E KSG+ PNQ +
Sbjct: 72 KINLLIKQKPILWHSCNGIKIAKAMDKRL---DYKLNTLLEINSANENSKSGLDPNQAVE 128
Query: 144 DFVILCRQKYQLNVEGLMCI 163
+++ + + LN+ G+M I
Sbjct: 129 EYLQIQEECSNLNLCGVMSI 148
>gi|226328802|ref|ZP_03804320.1| hypothetical protein PROPEN_02702 [Proteus penneri ATCC 35198]
gi|225201988|gb|EEG84342.1| hypothetical protein PROPEN_02702 [Proteus penneri ATCC 35198]
Length = 111
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+ I+ A R + ++L+AVSK + I A++CGQ F EN +QE K
Sbjct: 12 RSHIDTVAQKCGRSSEEITLLAVSKTKPASDIEKAIACGQTEFGENYVQEGVDKIHYFAD 71
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKT 105
+ FIG LQSNK + FD T+ R K
Sbjct: 72 NHTLVWHFIGPLQSNKTRLVAENFDWCHTIDRLKN 106
>gi|226328804|ref|ZP_03804322.1| hypothetical protein PROPEN_02704 [Proteus penneri ATCC 35198]
gi|225201990|gb|EEG84344.1| hypothetical protein PROPEN_02704 [Proteus penneri ATCC 35198]
Length = 115
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + GLM IP +L +
Sbjct: 4 LNVLIQINISDENSKSGISLTELDGLAAQISILSGIKLRGLMAIPAPESKYDKQVEVLEK 63
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ K + LSMGMT D E AIA G+T VRIG+ IFG R T
Sbjct: 64 MHLAFKQLQSQYPDIDTLSMGMTSDMEAAIACGSTLVRIGTAIFGARNYAT 114
>gi|251772207|gb|EES52777.1| conserved protein of unknown function [Leptospirillum
ferrodiazotrophum]
Length = 232
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 12/202 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE-W-DVQLRFIGSLQ 83
D LV V+K + +R + G AEN+ + ++ + W + FIG +Q
Sbjct: 26 DLPRLVGVTKTRSLEDVRALILAGVDHLAENRWESWHERLLAFPGNLWPSIFWHFIGPIQ 85
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
+ IE++ + LS ++ V ++VN ++G++P
Sbjct: 86 GRALKRFYRPLFCIESLDNLSHGTALSRLALESGAPQSVLLEVNVCRAPGRTGVLPENLF 145
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPH-----FYLLSEIARECK-----LTKLSMGM 193
+ L +EGLM + P G+ K F + + +E + + LSMGM
Sbjct: 146 PEIEALAALPGLRLEGLMVMGPIPGDAKSPSSSEVFGEGNALFQEARRLIPSMGTLSMGM 205
Query: 194 TRDFELAIASGATSVRIGSGIF 215
+ D+ AI G+T VRIG +F
Sbjct: 206 SEDYREAIRWGSTEVRIGRSLF 227
>gi|213417290|ref|ZP_03350434.1| hypothetical protein Salmonentericaenterica_04992 [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 108
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQ---LRFIGSLQSNKVSEIVSLFDVIETVSR 102
+K I +E V+ FIG LQSNK + FD T+ R
Sbjct: 63 VEK-IRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDR 105
>gi|167847187|ref|ZP_02472695.1| hypothetical protein BpseB_18072 [Burkholderia pseudomallei B7210]
Length = 89
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 155 LNVEGLMCIPPAMGNPK----PH--FYLLSEIARE--CKLTKLSMGMTRDFELAIASGAT 206
L + GLM IP +P+ PH + L E R L LSMGM+ D E A+A GAT
Sbjct: 14 LRLRGLMAIPEPETDPEAKRAPHRALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGAT 73
Query: 207 SVRIGSGIFGER 218
VRIG+ IFG R
Sbjct: 74 IVRIGTAIFGAR 85
>gi|257483588|ref|ZP_05637629.1| hypothetical protein PsyrptA_10058 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 86
Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 154 QLNVEGLMCIPPAMGNPKPHFYLLSEIAR-----ECKLTKLSMGMTRDFELAIASGATSV 208
+L + GLM IP +P + + L LSMGM+ D E AIA GAT V
Sbjct: 12 RLKLRGLMAIPEPTDDPAAQHASFAAVRTLQEQLNLALDTLSMGMSHDLEAAIAQGATWV 71
Query: 209 RIGSGIFGER 218
RIG+ +FG R
Sbjct: 72 RIGTALFGAR 81
>gi|237756655|ref|ZP_04585165.1| hypothetical protein SULYE_1217 [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237691187|gb|EEP60285.1| hypothetical protein SULYE_1217 [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 126
Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + +++I+ + + ++ V L+A SK +KI A G F ENK+QE
Sbjct: 1 MSIKENVLKIEERIQKACDKVGKKREEVILLAASKTQPVEKIIEAYESGIRYFGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSRE 103
+K L+K D+ IG LQ+NKV V ++ I +V R+
Sbjct: 61 GIEKIEKLKKYSDIHWHLIGGLQTNKVKYAVKYYESIHSVDRQ 103
>gi|331084010|ref|ZP_08333117.1| hypothetical protein HMPREF0992_02041 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330402372|gb|EGG81942.1| hypothetical protein HMPREF0992_02041 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 59
Score = 51.2 bits (121), Expect = 9e-05, Method: Composition-based stats.
Identities = 22/30 (73%), Positives = 26/30 (86%)
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGMT D+E+AI GAT VR+G+GIFGER
Sbjct: 26 LSMGMTGDYEVAIEEGATHVRVGTGIFGER 55
>gi|167721106|ref|ZP_02404342.1| hypothetical protein BpseD_19006 [Burkholderia pseudomallei DM98]
Length = 75
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 157 VEGLMCIPPAMGNPK----PH--FYLLSEIARE--CKLTKLSMGMTRDFELAIASGATSV 208
+ GLM IP +P+ PH + L E R L LSMGM+ D E A+A GAT V
Sbjct: 2 LRGLMAIPEPETDPEAKRAPHRALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATIV 61
Query: 209 RIGSGIFGER 218
RIG+ IFG R
Sbjct: 62 RIGTAIFGAR 71
>gi|289804061|ref|ZP_06534690.1| hypothetical protein Salmonellaentericaenterica_05882 [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 118
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 74 VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ 133
+ FIG LQSNK + FD T+ R + AS LS + L V IQ+N E
Sbjct: 4 LHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPALNVLIQINISDENS 63
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
KSGI + + +L + GLM IP P+ + E+AR+
Sbjct: 64 KSGIPLAELDELAAAVATLPRLRLRGLMAIPA----PESDYVRQFEVARQ 109
>gi|164657386|ref|XP_001729819.1| hypothetical protein MGL_2805 [Malassezia globosa CBS 7966]
gi|159103713|gb|EDP42605.1| hypothetical protein MGL_2805 [Malassezia globosa CBS 7966]
Length = 768
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 63/127 (49%), Gaps = 15/127 (11%)
Query: 20 LAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
L K+P+ L+ VSK+ + A GQ F EN +QE +K L D+Q F
Sbjct: 267 LPKKPR----LLVVSKLQPPSALMAAYDRTGQRHFGENYVQELIEKARVLPD--DIQWHF 320
Query: 79 IGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRF------LPVYIQVNTGY 130
IG LQSNK + ++ ++ +++V EK A L + K L VYIQVNT
Sbjct: 321 IGGLQSNKAKLLAAVPNLYAVQSVDSEKLALGLEKTLAKPEHASLRKAPLYVYIQVNTSG 380
Query: 131 EIQKSGI 137
E KSG+
Sbjct: 381 EAGKSGV 387
Score = 38.5 bits (88), Expect = 0.75, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D AIA G+T VRIG+ FG R
Sbjct: 495 ELSMGMSADMSSAIAMGSTCVRIGNDSFGAR 525
>gi|213024386|ref|ZP_03338833.1| hypothetical protein Salmonelentericaenterica_18511 [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 96
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 16/77 (20%)
Query: 154 QLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLT------------KLSMGMTRDFELAI 201
+L + GLM IP P+ + E+AR+ + LS+GM+ D E AI
Sbjct: 19 RLRLRGLMAIP----APESDYVRQFEVARQMAVAFAGLKARYPDVDTLSLGMSDDMEAAI 74
Query: 202 ASGATSVRIGSGIFGER 218
A+G+T VRIG+ IFG R
Sbjct: 75 AAGSTMVRIGTAIFGAR 91
>gi|157136632|ref|XP_001663799.1| proline synthetase associated protein [Aedes aegypti]
gi|108880985|gb|EAT45210.1| proline synthetase associated protein [Aedes aegypti]
Length = 223
Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQE-AKKKWIP--LRKEWDVQLRFIGSLQSNK 86
LVAVSK + I S GQ F EN +QE +K P L D++ FIG LQ+NK
Sbjct: 40 LVAVSKTKPIELILDGYSIGQRDFGENYVQELIEKANDPRILEHCKDIRWHFIGHLQTNK 99
Query: 87 VSEIVSL--FDVIETVSREKTASLLSLEMIK------QSRFLPVYIQVNTGYEIQKSG 136
+++IV+L +I+TV K A L+ K + + L V IQ+NT E + G
Sbjct: 100 INKIVNLPNLHMIQTVHNAKLAEGLNKAWEKTKVEKPEKQQLNVLIQINTSGEDDRDG 157
>gi|23006220|ref|ZP_00048641.1| COG0325: Predicted enzyme with a TIM-barrel fold [Magnetospirillum
magnetotacticum MS-1]
Length = 156
Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + +++++A A R V L+ +K + +R + G + EN++QE
Sbjct: 14 IAQNLARVRTRVDDAARAAGRAASDVRLLVATKTQPADAVRTVVEAGADLIGENRVQELV 73
Query: 63 KK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K L V++ IG LQ NKV+++++ +E+V A L+ + R
Sbjct: 74 AKAPDLADLVTAGRVEVHMIGHLQRNKVNQVLATATGVESVDSLALAEALAARCARDGRV 133
Query: 120 LPVYIQVNTGYEIQKSGI 137
L V +QVN E KSG+
Sbjct: 134 LDVLVQVNVSGEESKSGV 151
>gi|255522107|ref|ZP_05389344.1| hypothetical protein LmonocFSL_12975 [Listeria monocytogenes FSL
J1-175]
Length = 118
Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQPEDVTLVAVTKTIDVAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA 106
++K + L + D+ +IGSLQ+ KV +++ D + ++ R A
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDRSSLA 106
>gi|316963953|gb|EFV49297.1| proline synthetase [Trichinella spiralis]
Length = 249
Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
I + F+ +++V +T + ++ + Q+ + V +QVNT EIQK G P Q
Sbjct: 4 ICTWFETVDSVKLAETLNRVARGRVDQTLLGKINVMLQVNTSGEIQKHGCEPEQVLQLAR 63
Query: 148 LCRQKYQ-LNVEGLM-------CIPPAMGNPKPHFYLLSEIAR----ECKLTKLSMGMTR 195
+ Q L + GLM C A G F + ++I E +LSMGM+
Sbjct: 64 MVVQDCPFLQLIGLMTIGTASSCAEVARGEFSKLFQIRNQICTDLDWEVGQLELSMGMSN 123
Query: 196 DFELAIASGATSVRI 210
DF+ AI G++SVR+
Sbjct: 124 DFQEAICCGSSSVRM 138
>gi|207108930|ref|ZP_03243092.1| hypothetical protein HpylH_06059 [Helicobacter pylori
HPKX_438_CA4C1]
Length = 134
Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 65/127 (51%), Gaps = 17/127 (13%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-- 70
KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K K L
Sbjct: 14 KIEKARIAYSR-HHIVKIVAVSKNASLEAIQHYYNCSQRAFGENKVQDLKTKMHSLEHLP 72
Query: 71 -EWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV----YI 124
EW IGSLQ NK++ ++SL ++ ++ K L+L++ K+ L V +
Sbjct: 73 LEW----HMIGSLQENKINALLSLKPALLHSLDSLK----LALKIEKRCEILGVNLNALL 124
Query: 125 QVNTGYE 131
QVN+ YE
Sbjct: 125 QVNSAYE 131
>gi|227202822|dbj|BAH56884.1| AT1G11930 [Arabidopsis thaliana]
Length = 121
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
Q++ +A A R D + +VAVSK IR GQ F EN +QE +K L +
Sbjct: 32 QRVNQAAEKAGRGSDQIRVVAVSKTKPVSLIRQVYDAGQRSFGENYVQEIIEKAPQLPE- 90
Query: 72 WDVQLRFIGSLQSNKV 87
D++ FIG+LQSNKV
Sbjct: 91 -DIEWHFIGNLQSNKV 105
>gi|154273182|ref|XP_001537443.1| hypothetical protein HCAG_07752 [Ajellomyces capsulatus NAm1]
gi|150415955|gb|EDN11299.1| hypothetical protein HCAG_07752 [Ajellomyces capsulatus NAm1]
Length = 182
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 50/96 (52%), Gaps = 10/96 (10%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVI-FAENKLQE--AKKKWIPLRKEWDVQLR 77
A+RP+ V LVAVSK+ + I++ + F EN LQE K K +P W
Sbjct: 35 AQRPQCPVRLVAVSKLKPASDIQILHEYNPALHFGENYLQELLEKSKILPPGIRW----H 90
Query: 78 FIGSLQSNK---VSEIVSLFDVIETVSREKTASLLS 110
FIG LQSNK ++ V +E+V EK ASLL
Sbjct: 91 FIGGLQSNKCVTLARDVRGLWAVESVDSEKKASLLD 126
>gi|253577874|ref|ZP_04855146.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850192|gb|EES78150.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 35
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 24/28 (85%)
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGMT D+++A+ GAT VR+G+GIFGER
Sbjct: 1 MGMTNDYQVAVEEGATMVRVGTGIFGER 28
>gi|167825701|ref|ZP_02457172.1| hypothetical protein Bpseu9_18662 [Burkholderia pseudomallei 9]
Length = 66
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 164 PPAMGNPKPHFYLLSEIARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P A P + L E R L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 6 PEAKRAPHRALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGAR 62
>gi|167895772|ref|ZP_02483174.1| hypothetical protein Bpse7_18671 [Burkholderia pseudomallei 7894]
Length = 48
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 24/33 (72%)
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 12 LDTLSMGMSDDLEAAVAEGATIVRIGTAIFGAR 44
>gi|167740076|ref|ZP_02412850.1| hypothetical protein Bpse14_18588 [Burkholderia pseudomallei 14]
Length = 44
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 24/33 (72%)
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 8 LDTLSMGMSDDLEAAVAEGATIVRIGTAIFGAR 40
>gi|34764316|ref|ZP_00145149.1| PROLINE SYNTHETASE ASSOCIATED PROTEIN [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27885907|gb|EAA23250.1| PROLINE SYNTHETASE ASSOCIATED PROTEIN [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 122
Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD--VQLRFIGSLQ 83
+ V LVAV+K + I L GQ I ENK+Q K K I KE + ++ FIG+LQ
Sbjct: 22 EKVKLVAVTKYSSVEDIEEFLETGQNICGENKVQVIKDK-IEYFKEKNKKIKWHFIGNLQ 80
Query: 84 SNKVSEIVSLFDVIETVSR 102
NKV I+ D+I +V++
Sbjct: 81 KNKVKYIIDDVDLIHSVNK 99
>gi|218658706|ref|ZP_03514636.1| alanine racemase domain protein [Rhizobium etli IE4771]
Length = 28
Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 1 MGMSGDYETAIAFGATSVRVGSAIFGAR 28
>gi|34762614|ref|ZP_00143607.1| PROLINE SYNTHETASE ASSOCIATED PROTEIN [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27887694|gb|EAA24770.1| PROLINE SYNTHETASE ASSOCIATED PROTEIN [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 78
Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 10/72 (13%)
Query: 154 QLNVEGLMCIPPAMGNPKPHFYLLSEIAR----------ECKLTKLSMGMTRDFELAIAS 203
LN+ G+M + P + K + SE+ + LT+LSMGM+ D+++A+
Sbjct: 6 NLNIIGVMTMAPFTDDEKILRMVFSELRKIKGELNKEYFNNNLTELSMGMSNDYKIALQE 65
Query: 204 GATSVRIGSGIF 215
G+T +R+G+ IF
Sbjct: 66 GSTFIRVGTKIF 77
>gi|221504298|gb|EEE29973.1| proline synthetase associated protein, putative [Toxoplasma gondii
VEG]
Length = 350
Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 25/36 (69%)
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L +LSMGM+ D AI G+T VRIG+ IFG RP Q
Sbjct: 310 LFELSMGMSGDMAEAIIHGSTEVRIGTAIFGSRPLQ 345
Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V L+AVSK + + A GQ F EN +QE +K L D++ IG LQSNK
Sbjct: 70 VRLLAVSKYQPASAVAAAALAGQRHFGENYVQELVEKATQL-CHLDLKWHMIGHLQSNKA 128
Query: 88 SEIV----SLFDVIETVSREKTASLLS---LEMIKQSRFLP--VYIQVNTGYEIQKSGI 137
+++ L+ +ETV +K A L+ ++ Q P V +QVN E KSG+
Sbjct: 129 KQLLMGCPQLY-AVETVDSKKLAKTLNDAVAAVLSQRNGAPLRVLVQVNASDEASKSGV 186
>gi|221483679|gb|EEE21991.1| proline synthetase associated protein, putative [Toxoplasma gondii
GT1]
Length = 349
Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 25/36 (69%)
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L +LSMGM+ D AI G+T VRIG+ IFG RP Q
Sbjct: 309 LFELSMGMSGDMAEAIIHGSTEVRIGTAIFGSRPLQ 344
Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V L+AVSK + + A GQ F EN +QE +K L D++ IG LQSNK
Sbjct: 69 VRLLAVSKYQPASAVAAAALAGQRHFGENYVQELVEKATQL-CHLDLKWHMIGHLQSNKA 127
Query: 88 SEIV----SLFDVIETVSREKTASLLS---LEMIKQSRFLP--VYIQVNTGYEIQKSGI 137
+++ L+ +ETV +K A L+ ++ Q P V +QVN E KSG+
Sbjct: 128 KQLLMGCPQLY-AVETVDSKKLAKTLNDAVATVLSQRNGAPLRVLVQVNASDEASKSGV 185
>gi|237841025|ref|XP_002369810.1| proline synthetase co-transcribed protein, putative [Toxoplasma
gondii ME49]
gi|211967474|gb|EEB02670.1| proline synthetase co-transcribed protein, putative [Toxoplasma
gondii ME49]
Length = 350
Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 25/36 (69%)
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L +LSMGM+ D AI G+T VRIG+ IFG RP Q
Sbjct: 310 LFELSMGMSGDMAEAIIHGSTEVRIGTAIFGSRPLQ 345
Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V L+AVSK + + A GQ F EN +QE +K L D++ IG LQSNK
Sbjct: 70 VRLLAVSKYQPASAVAAAALAGQRHFGENYVQELVEKATQL-CHLDLKWHMIGHLQSNKA 128
Query: 88 SEIV----SLFDVIETVSREKTASLLS---LEMIKQSRFLP--VYIQVNTGYEIQKSGI 137
+++ L+ +ETV +K A L+ ++ Q P V +QVN E KSG+
Sbjct: 129 KQLLMGCPQLY-AVETVDSKKLAKTLNDAVATVLSQRNGAPLRVLVQVNASDEASKSGV 186
>gi|170090440|ref|XP_001876442.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647935|gb|EDR12178.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 186
Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 58/136 (42%), Gaps = 37/136 (27%)
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTK------DFVILCR----QKYQLNVEGLMCI------ 163
L V+IQVNT E KSG+ P + + L R + +L +EGLM I
Sbjct: 46 LRVFIQVNTSGETSKSGLDPLSSASDLDSSELAQLARYVLTECPKLWLEGLMTIGALELS 105
Query: 164 -PPAMGNPKPHFYLLSEI-------------------ARE-CKLTKLSMGMTRDFELAIA 202
+ F L E RE LSMGM+ DFE A+
Sbjct: 106 LSSSEVEKNADFEKLKETRDVLDEYLGGLSGDGEKRWGREGLGGLALSMGMSSDFEAALK 165
Query: 203 SGATSVRIGSGIFGER 218
+G+ VR+G+GIFG+R
Sbjct: 166 AGSDIVRVGTGIFGQR 181
>gi|289804088|ref|ZP_06534717.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 50
Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 8 ARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 45
>gi|213618819|ref|ZP_03372645.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 60
Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 18 ARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 55
>gi|213582384|ref|ZP_03364210.1| hypothetical protein SentesTyph_14771 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 58
Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 16 ARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 53
>gi|213421344|ref|ZP_03354410.1| hypothetical protein Salmonentericaenterica_27899 [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 53
Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 11 ARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGAR 48
>gi|295115170|emb|CBL36017.1| Predicted enzyme with a TIM-barrel fold [butyrate-producing
bacterium SM4/1]
Length = 36
Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGMT D+E+AI GAT +R+G+GIFG R
Sbjct: 1 MGMTGDYEVAIEEGATMIRVGTGIFGAR 28
>gi|254383751|ref|ZP_04999100.1| hypothetical protein SSAG_03402 [Streptomyces sp. Mg1]
gi|194342645|gb|EDX23611.1| hypothetical protein SSAG_03402 [Streptomyces sp. Mg1]
Length = 75
Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+S GM+ D E AIA+GAT VR+GS I G RP
Sbjct: 39 MSAGMSGDLEAAIAAGATHVRVGSAILGHRP 69
>gi|84872182|ref|NP_001034166.1| proline synthase co-transcribed bacterial homolog protein isoform b
[Mus musculus]
gi|38174599|gb|AAH61045.1| Proline synthetase co-transcribed [Mus musculus]
gi|74188637|dbj|BAE28062.1| unnamed protein product [Mus musculus]
Length = 153
Score = 44.3 bits (103), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 73/145 (50%), Gaps = 13/145 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ S +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 11 LGVGFALRAVNERVQQS--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 68
Query: 57 KLQE-AKKKWIP--LRKEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSL 111
+QE +K P L +++ FIG LQ V++++++ ++ETV K A ++
Sbjct: 69 YVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETVDSVKLADKVNS 128
Query: 112 EMIKQSRFLP--VYIQVNTGYEIQK 134
K+ P V +Q+NT E K
Sbjct: 129 SWQKKGPTEPLKVMVQINTSGEDSK 153
>gi|124515880|gb|EAY57389.1| conserved protein of unknown function [Leptospirillum rubarum]
Length = 230
Score = 44.3 bits (103), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 85/208 (40%), Gaps = 30/208 (14%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL-------RFIG 80
+ +V V+K + + G AEN+ W L D+ L FIG
Sbjct: 32 IRIVGVTKGRSDEDALALFTAGVDHLAENR-------WEFLSGRADLCLSGRSPLWHFIG 84
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP-VYIQVNTGYEIQKSGIMP 139
+LQ + + ++TV R +L+ + +Q++ + ++++ +SG+
Sbjct: 85 ALQRRSLRQNYRPVYSVDTVDRPSVLPVLA-RLAEQAKVRQNILVELDLTGLPGRSGVRE 143
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL----------TKL 189
+ + C +L V+G + MG P ++ R + L
Sbjct: 144 DNLDSLLKECSGWPELEVKGFLV----MGPPPEDRAFSRQVFRRGRALFERFFSGNDHVL 199
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGE 217
SMGM+ D+ A+A G+T VRIG FGE
Sbjct: 200 SMGMSEDYSEAVAEGSTEVRIGRYFFGE 227
>gi|294779252|ref|ZP_06744656.1| conserved domain protein [Enterococcus faecalis PC1.1]
gi|294453619|gb|EFG22017.1| conserved domain protein [Enterococcus faecalis PC1.1]
Length = 119
Score = 43.9 bits (102), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 19/116 (16%)
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
+ ++ + +++VN E K G F+ ++ + GLM + P + +
Sbjct: 5 RATKVIRCFVEVNITGEESKHGFRKEDVLPFIQELADLDKIQIVGLMTMAPFGASEE--- 61
Query: 175 YLLSEIARECK---------------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+L RE K T+LSMGM+ DF +A+ GAT +RIG+ +F
Sbjct: 62 -VLHATFRELKELQMTVNEKHLSFAPCTELSMGMSNDFPIAVEEGATFIRIGTALF 116
>gi|255971452|ref|ZP_05422038.1| LOW QUALITY PROTEIN: predicted protein [Enterococcus faecalis T1]
gi|255962470|gb|EET94946.1| LOW QUALITY PROTEIN: predicted protein [Enterococcus faecalis T1]
Length = 121
Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 19/116 (16%)
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
+ ++ + +++VN E K G F+ ++ + GLM + P + +
Sbjct: 7 RATKVIRCFVEVNITGEESKHGFRKEDVLPFIQELADLDKIQIVGLMTMAPFGASEE--- 63
Query: 175 YLLSEIARECK---------------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+L RE K T+LSMGM+ DF +A+ GAT +RIG+ +F
Sbjct: 64 -VLHATFRELKELQMTVNEKHLSFAPCTELSMGMSNDFPIAVEEGATFIRIGTALF 118
>gi|266625686|ref|ZP_06118621.1| YlmE protein [Clostridium hathewayi DSM 13479]
gi|288862406|gb|EFC94704.1| YlmE protein [Clostridium hathewayi DSM 13479]
Length = 103
Score = 42.7 bits (99), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ ++I + A R ++ V+L+AVSK + A G F ENK+QE +K
Sbjct: 6 LEEVNRRISEACRRAGRNREDVTLIAVSKTKPVSMLEEAYETGIRDFGENKVQELCEKHE 65
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVS 101
L+ D++ IG LQ NKV +++ +I +V
Sbjct: 66 VLQS--DIRWHMIGHLQRNKVRQVIDKTVLIHSVD 98
>gi|84872187|ref|NP_001034167.1| proline synthase co-transcribed bacterial homolog protein isoform c
[Mus musculus]
gi|29126929|gb|AAH47992.1| Proline synthetase co-transcribed [Mus musculus]
Length = 141
Score = 41.6 bits (96), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 19/142 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ S +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 11 LGVGFALRAVNERVQQS--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 68
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMI 114
+ L +++ FIG LQ V++++++ ++ETV K A ++
Sbjct: 69 YI---------LSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETVDSVKLADKVNSSWQ 119
Query: 115 KQSRFLP--VYIQVNTGYEIQK 134
K+ P V +Q+NT E K
Sbjct: 120 KKGPTEPLKVMVQINTSGEDSK 141
>gi|255659976|ref|ZP_05405385.1| alanine racemase [Mitsuokella multacida DSM 20544]
gi|260847728|gb|EEX67735.1| alanine racemase [Mitsuokella multacida DSM 20544]
Length = 369
Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 9/141 (6%)
Query: 43 RVALSCGQVIFAENKLQEAKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVS 101
RVA+ G A L EA I LR+ + V + +G + ++ +IV +DV + V
Sbjct: 50 RVAVEAGASYLAVATLGEA----IELREAGFTVPILLLGLVLPDEARDIVD-YDVTQVVC 104
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161
A +S E ++Q + V+++V TG + + GI P + +Q + +EG+
Sbjct: 105 ELPLAEAISREAVRQHKTAKVHLKVETG--MGRIGIRPEEIGALAAAVKQLPNIEIEGMF 162
Query: 162 CIPPAMGNPKPHFYLLSEIAR 182
AM + K Y ++A+
Sbjct: 163 S-HFAMADSKDKTYTKGQLAK 182
>gi|258615780|ref|ZP_05713550.1| hypothetical protein EfaeD_08719 [Enterococcus faecium DO]
Length = 88
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 25/29 (86%)
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIF 215
++LSMGM++DF++AI GAT +R+G+ +F
Sbjct: 57 SELSMGMSQDFQIAIEEGATFIRVGTALF 85
>gi|329574346|gb|EGG55918.1| hypothetical protein HMPREF9520_01968 [Enterococcus faecalis
TX1467]
Length = 104
Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIF 215
T+LSMGM+ DF +A+ GAT +RIG+ +F
Sbjct: 73 TELSMGMSNDFPIAVEEGATFIRIGTALF 101
>gi|294871581|ref|XP_002765978.1| proline synthetase associated protein, putative [Perkinsus marinus
ATCC 50983]
gi|239866464|gb|EEQ98695.1| proline synthetase associated protein, putative [Perkinsus marinus
ATCC 50983]
Length = 173
Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 73 DVQLRFIGSLQSNKVSEI---------VSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
D+Q IG LQ NKV+ + V D I+ + A+ +++ +S L V+
Sbjct: 39 DIQWHMIGHLQRNKVAPLLKAVPHLYAVESVDSIKLADKLNAAAATAMDEGLRSDPLNVF 98
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSEI 180
I+V T EI K+GI ++ D + + L + GLM + P + + +F L+ I
Sbjct: 99 IEVMTSDEITKTGIEKDEDIDALAEHIATHCQGLKLFGLMTVANPDLAVARENFERLAAI 158
Query: 181 -----ARECKL 186
A CKL
Sbjct: 159 GERVYAHACKL 169
>gi|300771865|ref|ZP_07081736.1| Mur ligase domain protein/alanine racemase [Sphingobacterium
spiritivorum ATCC 33861]
gi|300761251|gb|EFK58076.1| Mur ligase domain protein/alanine racemase [Sphingobacterium
spiritivorum ATCC 33861]
Length = 813
Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 13/127 (10%)
Query: 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA 166
+ +S IK + P++I+V+TG + + G MP++ + + + RQ+ + V+ +
Sbjct: 559 AFISFVRIKDLKNFPIHIKVDTG--MHRLGFMPDEAEALIDILRQQDVVRVQSAFSHLAS 616
Query: 167 MGNPKPHFYLLSEIARECKLTK-----------LSMGMTRDFELAIASGATSVRIGSGIF 215
NP+ + + +I + + K + T EL ++ VR+G G++
Sbjct: 617 AANPQDNAFTAEQILKLDQFAKKLQQELGYSFLRHIAATSGIELWPSAYFDMVRLGIGMY 676
Query: 216 GERPCQT 222
G +T
Sbjct: 677 GVEASRT 683
>gi|206602124|gb|EDZ38606.1| Conserved protein of unknown function [Leptospirillum sp. Group II
'5-way CG']
Length = 230
Score = 39.7 bits (91), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 14/150 (9%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
FIG+LQ + + ++TV R +L+ + + ++++ +SG+
Sbjct: 82 FIGALQRRSLRQNYRPVFSVDTVDRPSVLPVLARLAEQGKTRQNILVELDLTGLPGRSGV 141
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL----------T 187
+ + C + +L V G + MG P L ++ R +
Sbjct: 142 REERLDSLLEECTRWPELVVRGFLV----MGPPPEDRTLSRQVFRRGRALFERFFSGNDH 197
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
LSMGM+ D+ A+A G+T VRIG F E
Sbjct: 198 VLSMGMSEDYPEAVAEGSTEVRIGRYFFEE 227
>gi|229092946|ref|ZP_04224079.1| Alanine racemase domain protein [Bacillus cereus Rock3-42]
gi|228690450|gb|EEL44234.1| Alanine racemase domain protein [Bacillus cereus Rock3-42]
Length = 104
Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIAR 182
+ T E K G+ +T F+ ++ ++ V GLM + P + F L + +
Sbjct: 1 MKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQK 60
Query: 183 E----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
E CK +LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 61 EVQGLELLHAPCK--ELSMGMSNDYTIAIEEGATYIRLGTILVG 102
>gi|225463488|ref|XP_002263539.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|225467157|ref|XP_002269853.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 207
Score = 38.9 bits (89), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L L+ ++ +A + R D V ++AVS+ I G F E+ +QE
Sbjct: 45 MTLARPLRSVIFRVRQTAERSDRRSDQVRVMAVSRTKPVSHIWQVHDVGHRCFGESYVQE 104
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL---FDVIETVSREKTA 106
++ L K D++ FI L+SNK+ ++++ ++E V+ EK A
Sbjct: 105 MNERAPQLPK--DIEWYFIEHLRSNKMKQLLATVLNLAMVEGVNNEKKA 151
>gi|284107226|ref|ZP_06386367.1| Alanine racemase [Candidatus Poribacteria sp. WGA-A3]
gi|283829973|gb|EFC34252.1| Alanine racemase [Candidatus Poribacteria sp. WGA-A3]
Length = 386
Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 12/152 (7%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
+G + +V ++V ++I T+S T LS E+ + R P++++V+TG +++ G
Sbjct: 87 MGGMLPGQVKDLVH-ANLIPTLSDADTMHALSREVSQHDRPYPIHVKVDTG--MRRLGFT 143
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFE 198
+ + + L+ +GLM NP P F LL ++ L R +
Sbjct: 144 TREVLPLLQSPAFSHLLSCQGLMTHLADADNPDPAFTLLQLDRFHETVSSLPANGPRPWR 203
Query: 199 LAIASGA---------TSVRIGSGIFGERPCQ 221
A + A VR G ++G P Q
Sbjct: 204 HAANTAAILWHPRAHLDMVRPGLLLYGYTPAQ 235
>gi|225467453|ref|XP_002263399.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 111
Score = 38.1 bits (87), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
++ +A ++ R + V ++A+SK IR + G F E+ +QE ++ L K
Sbjct: 9 RVRQTAEMSGRRSNQVRVMAISKPKPVSHIRQVHNVGHRCFGESYIQEMNERAPQLPK-- 66
Query: 73 DVQLRFIGSLQSNKVSEIVSL---FDVIETVSREKTA 106
D++ F+ L+SNK+ ++++ ++E V+ EK A
Sbjct: 67 DLEWYFMEHLRSNKMKQLLATVLNLAMVEGVNNEKKA 103
>gi|147779422|emb|CAN72285.1| hypothetical protein VITISV_013531 [Vitis vinifera]
Length = 940
Score = 38.1 bits (87), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L L+ ++ +A + R D V ++AVS+ I G F E+ +QE
Sbjct: 651 MTLARPLRSVIFRVRQTAERSDRRSDQVRVMAVSRTKPVSHIWQVHDVGHRCFGESYVQE 710
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL---FDVIETVSREK 104
++ L K D++ FI L+SNK+ ++++ ++E V+ EK
Sbjct: 711 MNERAPQLPK--DIEWYFIEHLRSNKMKQLLATVLNLAMVEGVNNEK 755
>gi|118464676|ref|YP_879606.1| amino acid ABC transporter ATP-binding protein [Mycobacterium avium
104]
gi|254773328|ref|ZP_05214844.1| amino acid ABC transporter, ATP-binding protein [Mycobacterium
avium subsp. avium ATCC 25291]
gi|118165963|gb|ABK66860.1| amino acid ABC transporter, ATP-binding protein [Mycobacterium
avium 104]
Length = 364
Score = 38.1 bits (87), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
F+GS S K + + + +IE T+ +S++ + S PV +++ GY IQ +G+
Sbjct: 33 FVGSSGSGKTTALRMINRMIE-----PTSGTISIDGVDVSTLDPVKLRLGIGYVIQHAGL 87
Query: 138 MPNQ 141
MP+Q
Sbjct: 88 MPHQ 91
>gi|255522097|ref|ZP_05389334.1| pyridoxal phosphate enzyme, YggS family protein [Listeria
monocytogenes FSL J1-175]
Length = 84
Score = 37.7 bits (86), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
T+LSMGMT D+ +AI GAT +R+G + +
Sbjct: 49 TELSMGMTNDYGVAITEGATFIRVGRALVSD 79
>gi|126659612|ref|ZP_01730742.1| alanine racemase [Cyanothece sp. CCY0110]
gi|126619058|gb|EAZ89797.1| alanine racemase [Cyanothece sp. CCY0110]
Length = 402
Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 73/156 (46%), Gaps = 18/156 (11%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
+G++ + + ++ +++ T+ + A ++S + + + LPV+++++TG + + GI
Sbjct: 98 ILGAINTPEEIAAIAHWNLEPTLCYPEQAMVVSQTLSQCEKVLPVHLKLDTG--MSRLGI 155
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP-HFYLLSEIARE--CKLTKLSMGMT 194
+Q +FV L +Q LN+ + +P P H YL + + L +G
Sbjct: 156 PWHQGTEFVTLVKQLPYLNLRSVYSHLATADDPDPSHMYLQHKRFKSAIANLKTQGIGPP 215
Query: 195 RDFELAIASGATS----------VRIGSGIFGERPC 220
R L A+ A + VR+G G++G P
Sbjct: 216 R---LHFANSAATLIAPQLHYDLVRVGLGLYGLYPA 248
>gi|260461326|ref|ZP_05809574.1| enzyme with a TIM-barrel fold-like protein [Mesorhizobium
opportunistum WSM2075]
gi|319785491|ref|YP_004144967.1| alanine racemase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|259032863|gb|EEW34126.1| enzyme with a TIM-barrel fold-like protein [Mesorhizobium
opportunistum WSM2075]
gi|317171379|gb|ADV14917.1| alanine racemase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 156
Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L +++I + A R + SV L+ V+K V ++ +R A G F ENK+QEA K
Sbjct: 26 TNLASVEERITLACARAGRDRASVRLLPVTKTVPAQILRYAFEVGISTFGENKIQEAMSK 85
>gi|326332058|ref|ZP_08198343.1| phosphoglycerate mutase [Nocardioidaceae bacterium Broad-1]
gi|325950196|gb|EGD42251.1| phosphoglycerate mutase [Nocardioidaceae bacterium Broad-1]
Length = 246
Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 33 VSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS 92
+ +V + +R A++ + L A++ WIP+R++W + R G+LQ SE +
Sbjct: 50 LPDLVHTSLLRRAINTANI-----ALDTAERHWIPVRRDWRLNERHYGALQGKNKSETLK 104
Query: 93 LF 94
F
Sbjct: 105 KF 106
>gi|220931017|ref|YP_002507925.1| alanine racemase [Halothermothrix orenii H 168]
gi|254802366|sp|B8D0W1|ALR_HALOH RecName: Full=Alanine racemase
gi|219992327|gb|ACL68930.1| alanine racemase [Halothermothrix orenii H 168]
Length = 379
Score = 37.0 bits (84), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
E++ +D+I TV RE+TA L+ K + V+I+V+TG + + G+ P + FV
Sbjct: 95 ELLFKYDLIPTVGREETALSLNRLAAKYNVVKKVHIKVDTG--MGRIGVRPREAVGFVKK 152
Query: 149 CRQKYQLNVEGLMC 162
+ +EGLM
Sbjct: 153 VNSLSNIKIEGLMT 166
>gi|119583764|gb|EAW63360.1| proline synthetase co-transcribed homolog (bacterial), isoform
CRA_a [Homo sapiens]
Length = 169
Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 46 LGVGCALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 103
Query: 57 KLQE-----AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS 92
+QE + K + L E ++ FIG LQ V++++
Sbjct: 104 YVQELLEKASNPKILSLCPE--IKWHFIGHLQKQNVNKLMG 142
>gi|39965481|ref|XP_365105.1| hypothetical protein MGG_09950 [Magnaporthe oryzae 70-15]
gi|145013142|gb|EDJ97783.1| hypothetical protein MGG_09950 [Magnaporthe oryzae 70-15]
Length = 937
Score = 36.6 bits (83), Expect = 2.9, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 38 DSKKIRVALSCGQVIFAENKLQ--EAKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLF 94
D++K + L+ QV +AE L EAK+ W KEW Q G SN + +V+LF
Sbjct: 562 DAQKSLITLTPPQVSYAELTLPLPEAKQLWFATTAKEWQTQYLARGEPSSNVLPSLVTLF 621
Query: 95 DVIETVSREK 104
I + R++
Sbjct: 622 QDISALGRDR 631
>gi|297185096|gb|ADI21205.1| hypothetical protein [uncultured gamma proteobacterium EB750_07C09]
Length = 56
Score = 36.2 bits (82), Expect = 3.2, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ LSMGMT D++ AI GAT VRIG+ F
Sbjct: 1 MXTLSMGMTNDYKAAIIEGATMVRIGNRSF 30
>gi|88799227|ref|ZP_01114806.1| Glycine/D-amino acid oxidase deaminating [Reinekea sp. MED297]
gi|88777986|gb|EAR09182.1| Glycine/D-amino acid oxidase deaminating [Reinekea sp. MED297]
Length = 436
Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG--------NPKPHFYLLS 178
N+GY + + + + D + +KY+LN+ G+ + + NP F+ S
Sbjct: 74 NSGYLVDSTLNDGHLSDDGLSRYLEKYRLNLAGVDAVKAFVDQHNVNCDWNPCGKFHATS 133
Query: 179 EIARECKLTKLSMGMTR-DFELAI-ASGATSVRIGSGIF 215
A E KLT+ S +T+ D E +I +S A S R+G+G +
Sbjct: 134 LAANEAKLTQFSDTLTQCDIEHSIVSSDALSSRLGTGFY 172
>gi|304436482|ref|ZP_07396456.1| DNA translocase FtsK [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304370528|gb|EFM24179.1| DNA translocase FtsK [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 875
Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 30/166 (18%)
Query: 32 AVSKMVDSKKI------RVALSCGQVIFAENKLQEAKKKWIPLR--------KEWDVQLR 77
AVS VDS+ I L G ++F+ Q A K P+R +E ++ L
Sbjct: 711 AVSSQVDSRTILDRGGAETLLGKGDMLFSP---QGAPK---PIRVQGAFISDEEVEMLLD 764
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP--VYIQVNTGYEIQKS 135
+I S Q +VSE L D IE SRE +S ++KQ + LP V + ++TG + S
Sbjct: 765 YIRS-QGQEVSENEELIDFIENDSREDDSSEEDEFLVKQDKLLPDAVELVMSTG-QASSS 822
Query: 136 GIMPNQTKDFVILCRQKYQL--NVEGLMCIPPAMGNPKPHFYLLSE 179
I + F + + +L +E L I P+ G KP L+S+
Sbjct: 823 SIQ----RRFRVGYSRAARLVDTMEELRIIGPSGGGNKPREILMSQ 864
>gi|169841847|ref|ZP_02874956.1| hypothetical protein cdivTM_32110 [candidate division TM7
single-cell isolate TM7a]
Length = 47
Score = 36.2 bits (82), Expect = 3.5, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+T LSMGM+ D+ A+ +GAT +RIGS +F
Sbjct: 17 ITTLSMGMSNDYIEALKNGATIIRIGSKLF 46
Searching..................................................done
Results from round 2
>gi|254780801|ref|YP_003065214.1| hypothetical protein CLIBASIA_03460 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040478|gb|ACT57274.1| hypothetical protein CLIBASIA_03460 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 222
Score = 314 bits (805), Expect = 6e-84, Method: Composition-based stats.
Identities = 222/222 (100%), Positives = 222/222 (100%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE
Sbjct: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL
Sbjct: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI
Sbjct: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT
Sbjct: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
>gi|218778253|ref|YP_002429571.1| alanine racemase domain protein [Desulfatibacillum alkenivorans
AK-01]
gi|218759637|gb|ACL02103.1| alanine racemase domain protein [Desulfatibacillum alkenivorans
AK-01]
Length = 233
Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats.
Identities = 83/230 (36%), Positives = 120/230 (52%), Gaps = 12/230 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ +++I+ +A R S+ LVAVSK ++ +R A + G IF EN +QEA
Sbjct: 4 TISKNLQEIQERIQKAAEECGRDPQSIRLVAVSKTKPAEMLRQAAAAGATIFGENYIQEA 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K L + DV+ FIG LQSNK V LF +I +V K A + + K +
Sbjct: 64 REKIAEL-ESLDVEWHFIGHLQSNKAKYAVPLFSLIHSVDSFKLAGEIDKQAAKAGKIQD 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+ +QVN E KSG + V + V+GLM +PP +P +P F L
Sbjct: 123 ILVQVNISGEETKSGTADEEAATLVKEISALENVRVKGLMTMPPFFDDPDRARPFFRRLR 182
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+A+ + + +LSMGMT DFE AI GAT VR+G+ IFG R
Sbjct: 183 ELAQAIQNKGFKNVSMEELSMGMTGDFEAAIEEGATLVRVGTAIFGARNY 232
>gi|253700158|ref|YP_003021347.1| alanine racemase domain protein [Geobacter sp. M21]
gi|251775008|gb|ACT17589.1| alanine racemase domain protein [Geobacter sp. M21]
Length = 230
Score = 303 bits (778), Expect = 9e-81, Method: Composition-based stats.
Identities = 89/232 (38%), Positives = 124/232 (53%), Gaps = 13/232 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L ++++ +A+ A R D+V LVAVSK + I A +CGQ IF EN +QE
Sbjct: 1 MSVAENLGKIRERVRQAALRAGREPDAVRLVAVSKTKPAAAIEEAFACGQQIFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L K D+ FIG+LQSNKV +I + D+I +V R A+ + + +
Sbjct: 61 LVGKQAELPK--DISWHFIGNLQSNKVRQITGMVDLIHSVDRLSLATEIDRQWGALGKVC 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V IQVN E K G + V + L V GLM +PP +P +P+F L
Sbjct: 119 EVLIQVNISQEETKGGTSSEELFQLVRDAAKLPNLRVVGLMTMPPFFDDPEGARPYFREL 178
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ARE ++ +LSMGM+ DFE AI GAT VR+GS +FGER +
Sbjct: 179 RELARELEAAAIPGVEMRELSMGMSGDFEAAIEEGATLVRVGSALFGERQYR 230
>gi|197119080|ref|YP_002139507.1| pyridoxal phosphate-dependent enzyme, class III [Geobacter
bemidjiensis Bem]
gi|197088440|gb|ACH39711.1| pyridoxal phosphate-dependent enzyme, class III [Geobacter
bemidjiensis Bem]
Length = 230
Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats.
Identities = 87/232 (37%), Positives = 124/232 (53%), Gaps = 13/232 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L +++I +A+ A R D+V LVAVSK + I A +CGQ IF EN +QE
Sbjct: 1 MSVAENLGKIRERIRQAALRAGREPDAVRLVAVSKTKPAAAIEEAFACGQQIFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L ++ FIG+LQSNKV +I + D+I +V R A+ + + +
Sbjct: 61 LVGKKGELP--PEISWHFIGNLQSNKVRQIAGMVDLIHSVDRLSLAAEIDRQWGALGKVC 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V IQVN E K G ++ V + L V GLM +PP +P +P+F L
Sbjct: 119 EVLIQVNISQEETKGGTSSDELFQLVRDVAKLSNLRVVGLMTMPPFFDDPEGARPYFREL 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+AR+ + + +LSMGM+ DFE AI GAT VR+GS +FGER +
Sbjct: 179 RELARKLEAAAIPGVSMLELSMGMSGDFEAAIEEGATLVRVGSALFGEREYR 230
>gi|156307500|ref|XP_001617643.1| hypothetical protein NEMVEDRAFT_v1g225918 [Nematostella vectensis]
gi|156194985|gb|EDO25543.1| predicted protein [Nematostella vectensis]
Length = 228
Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats.
Identities = 79/226 (34%), Positives = 111/226 (49%), Gaps = 6/226 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +I +A ++R S+ L+AVSK ++ IR A + G F EN LQEA
Sbjct: 3 TIAENIAKVGVRIREAAQASQRDCGSIGLLAVSKTKPAEAIRQAFAAGTRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K + L + FIG +QSNK I F + +V R K A LS + L
Sbjct: 63 LEKQVELSDLP-LTWHFIGPIQSNKTKPIAEHFAWVHSVDRLKIAQRLSDQRPAHLPALN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+ +QVN E KSG P++ Q L + GLM IP +P + F L
Sbjct: 122 ICLQVNVSGEASKSGCNPDELPALAQAVTQLPNLCLRGLMTIPEPTDDPVEQRAAFARLR 181
Query: 179 EIARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
E+ ++ L LSMGM+ D E AIA GAT VRIG+ +FG R T
Sbjct: 182 ELQQDLNLDLDTLSMGMSHDLEAAIAEGATWVRIGTALFGARDYST 227
>gi|313501070|gb|ADR62436.1| Alanine racemase domain protein [Pseudomonas putida BIRD-1]
Length = 228
Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats.
Identities = 77/226 (34%), Positives = 101/226 (44%), Gaps = 6/226 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + L +I +++ R SV L+AVSK + IR + G F EN LQEA
Sbjct: 3 TLADNLSAISARIASASQAVGRDPASVQLLAVSKTKPASAIREIHAAGVHDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + FIG +QSNK I FD + +V R K A LS + L
Sbjct: 63 LTKQQALSDLPLI-WHFIGPIQSNKTKAIAEHFDWVHSVDRLKIAQRLSEQRPAGLAPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
+ +QVN E KSG P L + GLM IP + + F L
Sbjct: 122 ICLQVNVSGEDSKSGCTPADLPALAKAVAALPNLRLRGLMAIPEPTEDRATQEAAFASLR 181
Query: 179 EIAREC--KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 KLQEGLGFGLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDYGN 227
>gi|145639591|ref|ZP_01795195.1| hypothetical protein CGSHiII_10128 [Haemophilus influenzae PittII]
gi|145271382|gb|EDK11295.1| hypothetical protein CGSHiII_10128 [Haemophilus influenzae PittII]
gi|309750493|gb|ADO80477.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
Length = 237
Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats.
Identities = 79/233 (33%), Positives = 111/233 (47%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQGVNLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V IQ+N E KSGI P + L + GLM IP N F
Sbjct: 121 LNVLIQINISDEESKSGIQPGEMLTLAKHIENLPHLCLRGLMAIPAPTDNIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|16272064|ref|NP_438263.1| hypothetical protein HI0090 [Haemophilus influenzae Rd KW20]
gi|260580606|ref|ZP_05848433.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
gi|1723862|sp|P44506|Y090_HAEIN RecName: Full=UPF0001 protein HI_0090
gi|1573041|gb|AAC21768.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|260092668|gb|EEW76604.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
Length = 237
Score = 299 bits (767), Expect = 2e-79, Method: Composition-based stats.
Identities = 79/233 (33%), Positives = 110/233 (47%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQGINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V IQ+N E KSGI P + L + GLM IP N F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDNIAEQENAFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ E+ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MLELFEQLKQVLPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|167758168|ref|ZP_02430295.1| hypothetical protein CLOSCI_00506 [Clostridium scindens ATCC 35704]
gi|167664065|gb|EDS08195.1| hypothetical protein CLOSCI_00506 [Clostridium scindens ATCC 35704]
Length = 231
Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 117/229 (51%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ + KI+ + R +D V+L+AVSK + ++ A G IF ENK+QE
Sbjct: 2 LKENLEAVESKIQAACHSCGRSRDEVTLIAVSKTKPVETLKEAHDLGVRIFGENKVQELS 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + D+ IG LQ NKV I+ D+I +V + A + E K+ V
Sbjct: 62 DKHDLLPQ--DIHWHMIGHLQRNKVKYIIDKVDLIHSVDSLRLAEAIEKEAAKRDLVANV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
++VN E K G+MP + +F+ + V+GLM I P + NP +P F L +
Sbjct: 120 LLEVNVAKEESKFGLMPEEVFEFIDKIAGFSHIQVKGLMTIAPFVDNPEENRPIFARLRK 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ ++ LSMGMT D+++AI GAT VR+G+GIFG R
Sbjct: 180 LSVDIAEKNVDNITMSILSMGMTNDYQVAIEEGATMVRVGTGIFGARDY 228
>gi|145637682|ref|ZP_01793336.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
PittHH]
gi|145269142|gb|EDK09091.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
PittHH]
Length = 237
Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats.
Identities = 78/233 (33%), Positives = 111/233 (47%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEYFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYL 176
L V IQ+N E KSGI P + L + GLM IP + F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIAEQETVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|89091926|ref|ZP_01164881.1| hypothetical protein MED92_07161 [Oceanospirillum sp. MED92]
gi|89083661|gb|EAR62878.1| hypothetical protein MED92_07161 [Oceanospirillum sp. MED92]
Length = 236
Score = 298 bits (765), Expect = 2e-79, Method: Composition-based stats.
Identities = 83/228 (36%), Positives = 120/228 (52%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ L+ +Q+I ++A+ + R + ++L+AVSK + +R A GQ F EN LQE+
Sbjct: 3 SIAKNLEKVRQQIADTAVQSNRQSNEITLLAVSKTRPADDLRSAYEEGQRHFGENYLQES 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L D+ FIG LQSNK + FD + TV R K A LS + +Q L
Sbjct: 63 LEKIQSLSD-LDICWHFIGPLQSNKTRTVAENFDWMHTVDRLKIAQRLSAQRPEQLAPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
+ IQVN E KSG P Q + Q +++ GLM IP A +PK F +
Sbjct: 122 ICIQVNISNEDSKSGCSPEQVAELADQISQLPNISLRGLMAIPKASSDPKEQAEAFQKMR 181
Query: 179 EIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ E +L LSMGM+ D AI++G+T VR+G+ IFG RP +
Sbjct: 182 LLQLELQQSHPQLDTLSMGMSGDMNEAISAGSTIVRVGTAIFGPRPPK 229
>gi|226942470|ref|YP_002797543.1| alanine racemase domain-containing protein [Azotobacter vinelandii
DJ]
gi|226717397|gb|ACO76568.1| alanine racemase domain protein [Azotobacter vinelandii DJ]
Length = 234
Score = 298 bits (765), Expect = 3e-79, Method: Composition-based stats.
Identities = 79/228 (34%), Positives = 107/228 (46%), Gaps = 10/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + + +I +A + R +V L+AVSK + +R A +CGQ F EN LQEA
Sbjct: 3 SIPESVAKVRARIREAAQASGRDPQNVRLLAVSKTKPASVLREAFACGQRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L ++ FIG +QSNK I F + +V R K A LS + L
Sbjct: 63 LAKQAELAD-LELTWHFIGPIQSNKTRAIAEHFAWVHSVDRAKIAQRLSEQRPAHLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
+ +QVN E KSG P + + + L + GLM IP +P F L
Sbjct: 122 ICLQVNVSGEASKSGCEPEELAELAGAVAELPNLRLRGLMAIPEPSDDPAAQHAPFARLR 181
Query: 179 EIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 ELQESLGQHLGLDLDTLSMGMSHDLEAAIAEGATWVRIGTALFGARDY 229
>gi|145633703|ref|ZP_01789429.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
3655]
gi|145635487|ref|ZP_01791187.1| hypothetical protein CGSHiAA_03736 [Haemophilus influenzae PittAA]
gi|144985463|gb|EDJ92284.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
3655]
gi|145267252|gb|EDK07256.1| hypothetical protein CGSHiAA_03736 [Haemophilus influenzae PittAA]
Length = 237
Score = 298 bits (765), Expect = 3e-79, Method: Composition-based stats.
Identities = 78/233 (33%), Positives = 111/233 (47%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEKNRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYL 176
L V IQ+N E KSGI P + L + GLM IP + F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|323137154|ref|ZP_08072233.1| alanine racemase domain protein [Methylocystis sp. ATCC 49242]
gi|322397512|gb|EFY00035.1| alanine racemase domain protein [Methylocystis sp. ATCC 49242]
Length = 223
Score = 298 bits (765), Expect = 3e-79, Method: Composition-based stats.
Identities = 100/223 (44%), Positives = 136/223 (60%), Gaps = 1/223 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++L K I +A R V+LV V+K ++ + L G +F EN++QE
Sbjct: 1 MTIIDRLNETKASIARAATDCGRDPAEVTLVCVTKTFPAEDVVPLLDAGHRVFGENRVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW LR++ D++L IG LQSNK E V FDVI++V REK A LS EM K R
Sbjct: 61 AMGKWPALREKYPDIELHLIGPLQSNKTQEAVETFDVIQSVDREKIAKALSEEMAKTGRR 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+++QVNTG E QK+G++P + F+ CR+KY L + GLMC+PP PHF LL++
Sbjct: 121 PRLFVQVNTGAEPQKAGVLPEEADAFIAACREKYGLEIAGLMCVPPVGEQASPHFALLAD 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
IA L +LSMGM+ D+ELAI GAT VR+GS I G R T
Sbjct: 181 IAARNGLRELSMGMSSDYELAIQLGATYVRVGSAIMGARDYST 223
>gi|126175227|ref|YP_001051376.1| alanine racemase domain-containing protein [Shewanella baltica
OS155]
gi|125998432|gb|ABN62507.1| alanine racemase domain protein [Shewanella baltica OS155]
Length = 232
Score = 298 bits (765), Expect = 3e-79, Method: Composition-based stats.
Identities = 83/230 (36%), Positives = 122/230 (53%), Gaps = 9/230 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +++I +A R S+ L+AVSK + I A GQ F EN +QE
Sbjct: 3 TIADRLAIAQRRIAQAAQKCARQPSSIRLLAVSKTKPIEDIIAAYQAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L+++ D++ FIG LQSNK + + FD + TVSR+K A L+ + + L
Sbjct: 63 AEKITALKEDFPDIEWHFIGPLQSNKTNIVAQHFDWMHTVSRDKIAQRLNDQRPAELAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
V IQ+N E KSGI Q L Q L + GLM IP A + + F +L
Sbjct: 123 NVCIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALRGLMAIPTATADTELQLKEFSML 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + +E K + LSMGM+ D + AI+ G+T VRIGS IFGER
Sbjct: 183 NNLFQELKSHYPSVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGERNYAA 232
>gi|68248701|ref|YP_247813.1| hypothetical protein NTHI0168 [Haemophilus influenzae 86-028NP]
gi|68056900|gb|AAX87153.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP]
Length = 237
Score = 298 bits (765), Expect = 3e-79, Method: Composition-based stats.
Identities = 78/233 (33%), Positives = 112/233 (48%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK +I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISEILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQGVNLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYL 176
L V IQ+N E KSGI P + L + GLM IP + F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|271501904|ref|YP_003334930.1| alanine racemase domain-containing protein [Dickeya dadantii
Ech586]
gi|270345459|gb|ACZ78224.1| alanine racemase domain protein [Dickeya dadantii Ech586]
Length = 243
Score = 298 bits (765), Expect = 3e-79, Method: Composition-based stats.
Identities = 75/232 (32%), Positives = 109/232 (46%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ +QKI +A R + ++L+AVSK + A++ GQ F EN +QE
Sbjct: 9 TVQQNLQDVRQKISAAAQRCGRAPEEITLLAVSKTKPVSALEEAIAAGQRAFGENYVQEG 68
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + ++ FIG LQSNK + FD T+ R + A LS +
Sbjct: 69 VDKVRHFQTALPDVALEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIAQRLSEQRPAHLP 128
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V +QVN E KSGI+ ++ + L + GLM IP + F
Sbjct: 129 PLNVLLQVNISQEASKSGILVSELPELAASVATLPNLRLRGLMAIPAPQADHAQQLAVFR 188
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++E+ + K L LSMGMT D AI +G+T VRIG+ IFG R +
Sbjct: 189 QMTELFLQLKVDYGTLDTLSMGMTDDMAAAIEAGSTMVRIGTAIFGARDYSS 240
>gi|53804165|ref|YP_113991.1| hypothetical protein MCA1536 [Methylococcus capsulatus str. Bath]
gi|53757926|gb|AAU92217.1| conserved hypothetical protein TIGR00044 [Methylococcus capsulatus
str. Bath]
Length = 229
Score = 298 bits (764), Expect = 4e-79, Method: Composition-based stats.
Identities = 83/225 (36%), Positives = 112/225 (49%), Gaps = 7/225 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ L LQ +Q+I + RP+DSV LVAVSK + +R A GQ F EN LQE
Sbjct: 2 LELQENLQAVRQRIRAAEQACGRPEDSVRLVAVSKTQPAAVLRAAYDLGQREFGENYLQE 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K L + D+ FIG +QSNK + FD + ++ R K A L+ + L
Sbjct: 62 AMEKQD-LLADLDIVWHFIGPIQSNKTRLLAERFDWVHSIDRLKIAQRLNDQRPPGRAPL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQVN G E KSG+ P + +L + GLM IP + + F L
Sbjct: 121 NVCIQVNIGGEPTKSGVTPAAVAELAQAVAALPRLRLRGLMAIPAPTADEREQRAAFRRL 180
Query: 178 SEIARECKL---TKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E+ + LSMGM+ D E A+A G T VR+G+ IFG RP
Sbjct: 181 RELLEGLGMPGLDTLSMGMSDDLEAAVAEGTTLVRVGTAIFGRRP 225
>gi|319775029|ref|YP_004137517.1| hypothetical protein HICON_03630 [Haemophilus influenzae F3047]
gi|329123064|ref|ZP_08251635.1| YggS family pyridoxal phosphate enzyme [Haemophilus aegyptius ATCC
11116]
gi|317449620|emb|CBY85826.1| conserved hypothetical protein [Haemophilus influenzae F3047]
gi|327471995|gb|EGF17435.1| YggS family pyridoxal phosphate enzyme [Haemophilus aegyptius ATCC
11116]
Length = 237
Score = 298 bits (764), Expect = 4e-79, Method: Composition-based stats.
Identities = 79/233 (33%), Positives = 112/233 (48%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K +E +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQEVNLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYL 176
L V IQ+N E KSGI P + L + GLM IP + F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIAEQEAMFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|239996730|ref|ZP_04717254.1| alanine racemase domain protein [Alteromonas macleodii ATCC 27126]
Length = 228
Score = 298 bits (763), Expect = 4e-79, Method: Composition-based stats.
Identities = 76/225 (33%), Positives = 110/225 (48%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L ++ I+ +A A RP +SV L+AVSK I A GQ +F EN +QE
Sbjct: 3 TIAERLDSARKGIDQAATSAHRPPNSVKLLAVSKTKPVSDIMEAYDAGQRMFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L D++ IG +QSNK + FD +++V REK A L+ + L
Sbjct: 63 VEKVQELSHLSDIEWHMIGPIQSNKTKVVAEHFDWVQSVDREKIARRLNEQRPDSMPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
V IQVN E KSG+ ++ V + L + GLM IP P+ + L
Sbjct: 123 VCIQVNIDDEESKSGVALSELDALVEFINSQKHLTLRGLMAIPKADPSEEQQRATLSKLK 182
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ LS+GM+ D AI G+T VRIG+ IFG+R
Sbjct: 183 ELFDHYHTSLSNFDTLSVGMSSDMTEAIQHGSTMVRIGTAIFGKR 227
>gi|163749435|ref|ZP_02156683.1| hypothetical protein KT99_04189 [Shewanella benthica KT99]
gi|161330844|gb|EDQ01771.1| hypothetical protein KT99_04189 [Shewanella benthica KT99]
Length = 242
Score = 298 bits (763), Expect = 4e-79, Method: Composition-based stats.
Identities = 86/226 (38%), Positives = 119/226 (52%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +IE +A ++ R D + L+AVSK + I A + GQ F EN +QE
Sbjct: 14 TIADRLANAQHRIEQAAQISSRNADEIQLLAVSKTKPNADILAAYAAGQRRFGENYVQEG 73
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L+ +++ FIG LQSNK I S FD + TVSREK AS L+ + K L
Sbjct: 74 ESKVNALKDSCPEIEWHFIGPLQSNKTKIIASHFDWMHTVSREKIASRLNDQRPKDLCPL 133
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
+ IQ+N E KSG P + K Q L + GLM IP A + + F L
Sbjct: 134 NICIQINISSETSKSGTTPEELKSLASKIDQMPNLTLRGLMAIPTATSDKELQRDEFQQL 193
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +E K + LSMGM+ D E AI G+T VRIGS IFG R
Sbjct: 194 QALYQELKSLYPQVDTLSMGMSNDLEQAIEQGSTMVRIGSAIFGAR 239
>gi|28899390|ref|NP_798995.1| FkuA protein [Vibrio parahaemolyticus RIMD 2210633]
gi|153839183|ref|ZP_01991850.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
gi|260366261|ref|ZP_05778720.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
K5030]
gi|260878922|ref|ZP_05891277.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
AN-5034]
gi|260898277|ref|ZP_05906773.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
Peru-466]
gi|260903381|ref|ZP_05911776.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
AQ4037]
gi|28807626|dbj|BAC60879.1| FkuA [Vibrio parahaemolyticus RIMD 2210633]
gi|149747285|gb|EDM58269.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
gi|308085861|gb|EFO35556.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
Peru-466]
gi|308090493|gb|EFO40188.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
AN-5034]
gi|308107474|gb|EFO45014.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
AQ4037]
gi|308113535|gb|EFO51075.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
K5030]
gi|328474080|gb|EGF44885.1| FkuA protein [Vibrio parahaemolyticus 10329]
Length = 237
Score = 298 bits (763), Expect = 5e-79, Method: Composition-based stats.
Identities = 72/232 (31%), Positives = 109/232 (46%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +I R +SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITSQIRRDEQKCGRSPESVQLLAVSKTKPVEAILEAYQAGQTAFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + ++ FIG +QSNK + FD + T+ R K A L+ + ++ +
Sbjct: 63 VSKVQHFAEHYPDNRIEWHFIGPIQSNKSRLVAEHFDWVHTIDRAKIAQRLNEQRPQELK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG+ + + L + L + GLM IP + +
Sbjct: 123 PLQVLIQVNTSGEDSKSGVSDAEIFELAELISRLPNLTLRGLMSIPANVSDYDAQLREFE 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++A + ++ LSMGM+ D AI +G+T VRIG+ IFG R T
Sbjct: 183 KLATLKQTLEQQYPEIDTLSMGMSGDMTAAIEAGSTMVRIGTAIFGARDYST 234
>gi|113969537|ref|YP_733330.1| hypothetical protein Shewmr4_1193 [Shewanella sp. MR-4]
gi|113884221|gb|ABI38273.1| Protein of unknown function UPF0001 [Shewanella sp. MR-4]
Length = 238
Score = 298 bits (763), Expect = 5e-79, Method: Composition-based stats.
Identities = 82/228 (35%), Positives = 112/228 (49%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L V + +I +A R S+ L+AVSK + I A GQ F EN +QE
Sbjct: 3 TIADRLAVAQSRIAQAAQKCARLPHSIRLLAVSKTKPIEDIIAAYDAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L+ D++ FIG LQSNK + + FD + T+SREK A L+ + L
Sbjct: 63 VTKIESLKGTHPDIEWHFIGPLQSNKTALVAQHFDWMHTLSREKIAQRLNEQRPAHLAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQ+N E KSGI Q Q L + GLM IP A + LSE+
Sbjct: 123 NVCIQINISDEDTKSGIDAEQMLPLADSISQLPHLQLRGLMAIPSATNDIAQQSRELSEL 182
Query: 181 AR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + LSMGM+ D ++AI G+T VRIGS IFGER
Sbjct: 183 KQLFDTLKQHYPAVDTLSMGMSNDLDVAIECGSTMVRIGSAIFGERDY 230
>gi|15601977|ref|NP_245049.1| hypothetical protein PM0112 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|34223056|sp|Q9CPD5|Y112_PASMU RecName: Full=UPF0001 protein PM0112
gi|12720324|gb|AAK02196.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 233
Score = 298 bits (763), Expect = 5e-79, Method: Composition-based stats.
Identities = 80/232 (34%), Positives = 114/232 (49%), Gaps = 11/232 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L +Q I+++ AKRP+ +V L+AVSK + I A GQ F EN +QE
Sbjct: 1 MTIEQNLAQIQQNIQHAVQQAKRPESAVKLLAVSKTKPVEDIYQAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K K ++ FIG LQSNK + FD ++T+ R+K A L+ + +
Sbjct: 61 GVEKIQYFAQKNIPLEWHFIGPLQSNKTKLVAEHFDWMQTLDRKKIADRLNEQRPHYKKP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
L V IQ+N E KSGI PN+ D + L + GLM IP + + F
Sbjct: 121 LNVLIQINISDEDSKSGIQPNEMLDLAKQIQNLPHLCLRGLMAIPAPTDDLATQEQAFTQ 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + K + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 MHSLFEQLKQALPDAQIDTLSMGMTDDMASAIQCGSTMVRIGTAIFGARDYS 232
>gi|166031848|ref|ZP_02234677.1| hypothetical protein DORFOR_01549 [Dorea formicigenerans ATCC
27755]
gi|166028301|gb|EDR47058.1| hypothetical protein DORFOR_01549 [Dorea formicigenerans ATCC
27755]
Length = 244
Score = 298 bits (763), Expect = 5e-79, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 114/229 (49%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ +QKI+ + + R + V+L+AVSK ++ ++ A G +F ENK+QE
Sbjct: 12 LKENLENVEQKIQAACERSGRDRSEVTLIAVSKTKPAEMVQEAYDLGIRLFGENKVQEIM 71
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L D+ IG LQ NK+ I+ D+I +V + A + E K+ V
Sbjct: 72 DKSEVLPA--DIHWHMIGHLQRNKIKYIIDKVDLIHSVDSLRLAEAIEKEAAKKHVIAKV 129
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
I+VN G E K G +P + DFV + GLM P + NP +P F L +
Sbjct: 130 LIEVNVGREESKFGFLPEELDDFVEKASDFSHIQFMGLMTSAPFVDNPEENRPIFAELRK 189
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ A ++ LSMGMT D+E+AI GAT VR+G+ IFG R
Sbjct: 190 LSVDIARKNAHNMSMSILSMGMTNDYEVAIEEGATMVRVGTAIFGARNY 238
>gi|146309164|ref|YP_001189629.1| alanine racemase domain-containing protein [Pseudomonas mendocina
ymp]
gi|145577365|gb|ABP86897.1| alanine racemase domain protein [Pseudomonas mendocina ymp]
Length = 230
Score = 297 bits (762), Expect = 6e-79, Method: Composition-based stats.
Identities = 75/224 (33%), Positives = 105/224 (46%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +I +A ++R + L+AVSK + IR A + G F EN LQEA
Sbjct: 3 TIAENIAKVGARIREAAQASQRNFADIGLLAVSKTKPADAIREAHAAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L + FIG +QSNK I FD + +V R K A LS + L
Sbjct: 63 LEKQAALSDLPLI-WHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSDQRPAHLAPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
+ +QVN E KSG P + + L + GLM IP + F L
Sbjct: 122 ICLQVNVSGEDSKSGCSPEELPELAQAIAALPNLKLRGLMAIPEPTDDIAAQHAAFARLR 181
Query: 179 EIARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + +L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 QLRDDLGLQLDTLSMGMSHDLEAAIAEGATWVRIGTALFGARDY 225
>gi|218461353|ref|ZP_03501444.1| putative alanine racemase protein [Rhizobium etli Kim 5]
Length = 219
Score = 297 bits (762), Expect = 7e-79, Method: Composition-based stats.
Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I + A RP SV LVAVSK +++ IR A+ GQ +F EN++QE
Sbjct: 1 MELQERLNDVRSRIAAAERAAGRPAGSVRLVAVSKTFEAEAIRPAIEAGQRVFGENRVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E D++L IG LQSNK ++ V+LFDVIE+V REK A L+ EM +Q +
Sbjct: 61 SQGKWPALKAEYPDIELHLIGPLQSNKAADAVALFDVIESVDREKIARALAEEMKRQGKT 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y++VNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 PRLYVEVNTGLEPQKAGIAPDDTPAFVSLCRDELGLSIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LASKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGAR 219
>gi|145642000|ref|ZP_01797572.1| hypothetical protein CGSHiR3021_00702 [Haemophilus influenzae
R3021]
gi|148825633|ref|YP_001290386.1| hypothetical protein CGSHiEE_02835 [Haemophilus influenzae PittEE]
gi|145273271|gb|EDK13145.1| hypothetical protein CGSHiR3021_00702 [Haemophilus influenzae
22.4-21]
gi|148715793|gb|ABQ98003.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
PittEE]
gi|309972778|gb|ADO95979.1| Conserved hypothetical protein [Haemophilus influenzae R2846]
Length = 237
Score = 297 bits (761), Expect = 8e-79, Method: Composition-based stats.
Identities = 78/233 (33%), Positives = 111/233 (47%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEKNRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYL 176
L V IQ+N E KSGI P + L + GLM IP + F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLILAKHIENLPHLCLRGLMAIPAPTDKIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|251788397|ref|YP_003003118.1| alanine racemase domain-containing protein [Dickeya zeae Ech1591]
gi|247537018|gb|ACT05639.1| alanine racemase domain protein [Dickeya zeae Ech1591]
Length = 241
Score = 297 bits (761), Expect = 9e-79, Method: Composition-based stats.
Identities = 77/230 (33%), Positives = 107/230 (46%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ +QKI +A R ++L+AVSK I A++ GQ F EN +QE
Sbjct: 10 TVRQNLQDVRQKISAAAQCCGRDPQEITLLAVSKTKPVSAIEEAIAAGQRAFGENYVQEG 69
Query: 62 KKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + ++ FIG LQSNK + FD T+ R + A LS +
Sbjct: 70 VDKVRYFQTHQPDTALEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIAQRLSEQRPPHLP 129
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V +QVN E KSGI ++ + Q L + GLM IP F
Sbjct: 130 PLNVLLQVNISREASKSGIPADELAELAASVAQLPNLRLRGLMAIPAPETEHARQLAIFR 189
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++E+ + K L LSMGMT D AI +G+T VRIG+ IFG R
Sbjct: 190 QMTELFLQLKADYGTLDTLSMGMTDDMAAAIEAGSTMVRIGTAIFGARDY 239
>gi|330951376|gb|EGH51636.1| hypothetical protein PSYCIT7_08289 [Pseudomonas syringae Cit 7]
Length = 228
Score = 297 bits (761), Expect = 9e-79, Method: Composition-based stats.
Identities = 78/224 (34%), Positives = 109/224 (48%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A+R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAAERDPASVGLLAVSKTKPASDLREAYTAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L + FIG +QSNK I FD + +V R K A LS + + L
Sbjct: 63 LGKQLELSDLP-LCWHFIGPIQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
+ IQVN E KSG P +L + GLM IP +P F +
Sbjct: 122 ICIQVNVSGEASKSGCTPQDLPALAAAISALPRLRLRGLMAIPEPTDDPAAQNASFAAVR 181
Query: 179 EIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E A+A GAT VRIG+ +FG R
Sbjct: 182 TLQEQLHLPLDTLSMGMSHDLEAAVAQGATWVRIGTALFGARDY 225
>gi|319427153|gb|ADV55227.1| PLP-dependent amino acid racemase, YggS [Shewanella putrefaciens
200]
Length = 239
Score = 296 bits (760), Expect = 1e-78, Method: Composition-based stats.
Identities = 86/226 (38%), Positives = 116/226 (51%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + + +I +A R ++ L+AVSK + I A GQ F EN +QE
Sbjct: 10 TIADRLAIAQCRIAQAAQKCARQAHNIRLLAVSKTKPIEDIIAAYHAGQRCFGENYVQEG 69
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L K D++ FIG LQSNK + + FD + TVSR+K A L+ + L
Sbjct: 70 AAKITELSKNYPDIEWHFIGPLQSNKTNIVAQHFDWMHTVSRDKIALRLNEQRPTSMAPL 129
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
V IQ+N E KSGI NQ L Q L + GLM IP A N + F L
Sbjct: 130 NVCIQINISDEDTKSGIDANQMMPLAELISQLPNLKLRGLMAIPTATDNSTLQRQEFTKL 189
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ E K + LSMGM+ D + AIA G+T VRIGS IFGER
Sbjct: 190 KQLFDELKQHYADVDTLSMGMSNDLDTAIACGSTMVRIGSAIFGER 235
>gi|225572134|ref|ZP_03780998.1| hypothetical protein RUMHYD_00428 [Blautia hydrogenotrophica DSM
10507]
gi|225040400|gb|EEG50646.1| hypothetical protein RUMHYD_00428 [Blautia hydrogenotrophica DSM
10507]
Length = 244
Score = 296 bits (760), Expect = 1e-78, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ ++KIE + I + R V+L+AVSK + ++ A G F ENK+QE
Sbjct: 16 LSENLRDVEKKIEGACIRSGRNPKEVTLIAVSKTKPVEMLQEAYDAGAREFGENKVQEIT 75
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L + D+ IG LQ NKV IV +I +V + A + E K++ +PV
Sbjct: 76 AKYDQLPQ--DIHWHMIGHLQRNKVKYIVDKVKMIHSVDSLRLAETIDKEAQKKNVVVPV 133
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN E K G+ + + + + V+GLM + P + NP+ + + + +
Sbjct: 134 LIEVNVAEEDSKFGLSLEEVVSLIEAVSKLPNVRVQGLMTVAPFVENPEENREIFRSLKK 193
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 194 LSVDITAKNINNVTMSVLSMGMTNDYEVAIEEGATMVRVGTGIFGARDYS 243
>gi|238918246|ref|YP_002931760.1| pyridoxal phosphate enzyme, YggS family [Edwardsiella ictaluri
93-146]
gi|238867814|gb|ACR67525.1| pyridoxal phosphate enzyme, YggS family [Edwardsiella ictaluri
93-146]
Length = 236
Score = 296 bits (760), Expect = 1e-78, Method: Composition-based stats.
Identities = 82/232 (35%), Positives = 113/232 (48%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L +Q I +A R ++L+AVSK + I A++ GQ F EN +QE
Sbjct: 4 TIKHNLDAVRQHIARAAEQCGRHPRDITLLAVSKTKPIEDIDAAIAAGQRAFGENYVQEG 63
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K R++ ++ FIG LQSNK + FD I TV R K A L+ + Q +
Sbjct: 64 VSKIQHYRQQPQGDALEWHFIGPLQSNKSRPVAEHFDWIHTVDRVKIAQRLNEQRPAQLK 123
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVN E KSGI Q Q +L + GLM IP +P + +
Sbjct: 124 PLNVLIQVNISDEQSKSGITLEQIDALADAISQLPRLRLRGLMAIPAPEDDPARQLAVCT 183
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+A R +L LS+GMT D E AI +G+T VRIG+ IFG R T
Sbjct: 184 RMAQALSALQRRYPQLDTLSLGMTHDMEAAITAGSTLVRIGTAIFGARDYGT 235
>gi|319896535|ref|YP_004134728.1| hypothetical protein HIBPF01320 [Haemophilus influenzae F3031]
gi|317432037|emb|CBY80385.1| conserved hypothetical protein [Haemophilus influenzae F3031]
Length = 233
Score = 296 bits (760), Expect = 1e-78, Method: Composition-based stats.
Identities = 77/232 (33%), Positives = 111/232 (47%), Gaps = 11/232 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK +I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISEILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEYFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYL 176
L V IQ+N E KSGI P + L + GLM IP + F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIPEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARDYS 232
>gi|268593080|ref|ZP_06127301.1| pyridoxal phosphate enzyme, YggS family [Providencia rettgeri DSM
1131]
gi|291311349|gb|EFE51802.1| pyridoxal phosphate enzyme, YggS family [Providencia rettgeri DSM
1131]
Length = 230
Score = 296 bits (760), Expect = 1e-78, Method: Composition-based stats.
Identities = 75/228 (32%), Positives = 108/228 (47%), Gaps = 8/228 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ N + +IE++A +R ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 1 MTIQNNISDVTARIEHAAAECQRSPQDITLLAVSKTKPCEAISEAIEAGQRQFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D+ FIG LQSNK + FD T+ R K A L+ + + L
Sbjct: 61 GVEKIQYFSHRNDLIWHFIGPLQSNKSRLVAEHFDWFHTLDRAKIAQRLNDQRPSEKSPL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQ+N E KSGI + + L + GLM IP + + F+ +
Sbjct: 121 NVLIQINISDENSKSGITLAEVTELAAQVATMPNLVLRGLMTIPAPETDYERQCAVFHQM 180
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+E + K + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 NEAFEQLKTTYPTVDTLSMGMTDDMRAAIHCGSTLVRIGTAIFGARQY 228
>gi|114046770|ref|YP_737320.1| hypothetical protein Shewmr7_1264 [Shewanella sp. MR-7]
gi|113888212|gb|ABI42263.1| Protein of unknown function UPF0001 [Shewanella sp. MR-7]
Length = 238
Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats.
Identities = 83/228 (36%), Positives = 113/228 (49%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L V + +I +A R S+ L+AVSK + I A GQ F EN +QE
Sbjct: 3 TIADRLAVAQCRIAQAAQKCARLPHSIRLLAVSKTKPIEDIIAAYDAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L+ D++ FIG LQSNK + + FD + T+SREK A L+ + Q L
Sbjct: 63 VTKIETLKSTHPDIEWHFIGPLQSNKTALVAQHFDWMHTLSREKIAQRLNEQRPAQLAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQ+N E KSGI Q Q L + GLM IP A + LSE+
Sbjct: 123 NVCIQINISDEDTKSGIDAEQMLPLAHSISQLPHLQLRGLMAIPSATNDTAQQSRELSEL 182
Query: 181 AR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + LSMGM+ D ++AI G+T VRIGS IFGER
Sbjct: 183 KQLFDTLKQHYPAVDTLSMGMSNDLDVAIECGSTMVRIGSAIFGERDY 230
>gi|153853146|ref|ZP_01994555.1| hypothetical protein DORLON_00540 [Dorea longicatena DSM 13814]
gi|149753932|gb|EDM63863.1| hypothetical protein DORLON_00540 [Dorea longicatena DSM 13814]
Length = 232
Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 116/229 (50%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ ++ I+ + A R +D V+L+AVSK + ++ A G I ENK QE
Sbjct: 2 LKENLEKVEENIQAACDRAGRKRDEVTLIAVSKTKPVEMLQEAYDLGVRINGENKAQELA 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L K D+ IG +Q NKV I+ D+I +V + A + E K +
Sbjct: 62 SKYEVLPK--DIHWHMIGHMQRNKVKYIIDKVDLIHSVDSVRLAETIDKEAEKHGVIANI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
I+VN E K G+MP + +FV + V+GLM I P + NP +P F L +
Sbjct: 120 LIEVNVAKEESKFGLMPEEVPEFVEKIAGFPHIRVKGLMTIAPFVENPEENRPIFAHLRK 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ ++ LSMGMT D+++AI GAT VR+G+GIFG R
Sbjct: 180 LSVDIAKKNIDNITMSILSMGMTNDYQVAIEEGATMVRVGTGIFGARDY 228
>gi|294139814|ref|YP_003555792.1| hypothetical protein SVI_1043 [Shewanella violacea DSS12]
gi|293326283|dbj|BAJ01014.1| conserved hypothetical protein [Shewanella violacea DSS12]
Length = 231
Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats.
Identities = 85/227 (37%), Positives = 121/227 (53%), Gaps = 9/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +IE +A ++ R + + L+AVSK + I A + GQ F EN +QE
Sbjct: 3 TIADRLANAQHRIEQAAQISSRNANEIQLLAVSKTKPNSDILAAYTAGQRRFGENYVQEG 62
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L+ +++ FIG LQSNK I S F + TVSREK AS L+ + K+ L
Sbjct: 63 ESKVNALKDCCPEIEWHFIGPLQSNKTKIIASHFHWMHTVSREKIASRLNEQRPKEMPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
+ IQ+N E KSG P + + Q L + GLM IP A + + F L
Sbjct: 123 NICIQINISGEASKSGATPEELESLASKIEQMPNLILRGLMAIPTATSDKQLQTDEFQQL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ +E K + LSMGM+ D E AIA G+T VRIGS IFGER
Sbjct: 183 QTLYQELKSLYPRVDTLSMGMSNDLEQAIAQGSTMVRIGSAIFGERD 229
>gi|120598147|ref|YP_962721.1| alanine racemase domain-containing protein [Shewanella sp. W3-18-1]
gi|146293781|ref|YP_001184205.1| alanine racemase domain-containing protein [Shewanella putrefaciens
CN-32]
gi|120558240|gb|ABM24167.1| alanine racemase domain protein [Shewanella sp. W3-18-1]
gi|145565471|gb|ABP76406.1| alanine racemase domain protein [Shewanella putrefaciens CN-32]
Length = 232
Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats.
Identities = 86/226 (38%), Positives = 116/226 (51%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + + +I +A R ++ L+AVSK + I A GQ F EN +QE
Sbjct: 3 TIADRLAIAQCRIAQAAQKCARQAHNIRLLAVSKTKPIEDIIAAYHAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L K D++ FIG LQSNK + + FD + TVSR+K A L+ + L
Sbjct: 63 AAKITELSKNYPDIEWHFIGPLQSNKTNIVAQHFDWMHTVSRDKIALRLNEQRPTSMAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
V IQ+N E KSGI NQ L Q L + GLM IP A N + F L
Sbjct: 123 NVCIQINISDEDTKSGIDANQMMPLAELISQLPNLKLRGLMAIPTATDNSTLQRQEFTKL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ E K + LSMGM+ D + AIA G+T VRIGS IFGER
Sbjct: 183 KQLFDELKQHYADVDTLSMGMSNDLDTAIACGSTMVRIGSAIFGER 228
>gi|304410071|ref|ZP_07391690.1| alanine racemase domain protein [Shewanella baltica OS183]
gi|307302217|ref|ZP_07581975.1| alanine racemase domain protein [Shewanella baltica BA175]
gi|304351480|gb|EFM15879.1| alanine racemase domain protein [Shewanella baltica OS183]
gi|306914255|gb|EFN44676.1| alanine racemase domain protein [Shewanella baltica BA175]
Length = 239
Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats.
Identities = 84/230 (36%), Positives = 121/230 (52%), Gaps = 9/230 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +++I +A R S+ L+AVSK + I A GQ F EN +QE
Sbjct: 10 TIADRLAIAQRRIAQAAQKCARQPSSIRLLAVSKTKPIEDIIAAYQAGQRCFGENYVQEG 69
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L+ + D++ FIG LQSNK S + FD + TVSR+K A L+ + + L
Sbjct: 70 AEKITALKGDFPDIEWHFIGPLQSNKTSIVAQHFDWMHTVSRDKIAQRLNDQRPAEFAPL 129
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
V IQ+N E KSGI Q L Q L + GLM IP A + + F +L
Sbjct: 130 NVCIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALRGLMAIPTATADTELQLKEFSML 189
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + +E K + LSMGM+ D + AI+ G+T VRIGS IFGER
Sbjct: 190 NNLFQELKSHYPNVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGERNYAA 239
>gi|217972518|ref|YP_002357269.1| alanine racemase domain-containing protein [Shewanella baltica
OS223]
gi|217497653|gb|ACK45846.1| alanine racemase domain protein [Shewanella baltica OS223]
Length = 239
Score = 296 bits (759), Expect = 2e-78, Method: Composition-based stats.
Identities = 83/230 (36%), Positives = 121/230 (52%), Gaps = 9/230 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +++I +A R S+ L+AVSK + I A GQ F EN +QE
Sbjct: 10 TIADRLAIAQRRIAQAAQKCARQPSSIRLLAVSKTKPIEDIIAAYQAGQRCFGENYVQEG 69
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L+ + D++ FIG LQSNK S + FD + TVSR+K A L+ + + L
Sbjct: 70 AEKITALKGDFPDIEWHFIGPLQSNKTSIVAQHFDWMHTVSRDKIAQRLNEQRPAELAPL 129
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
+ IQ+N E KSGI Q L Q L + GLM IP A + + F +L
Sbjct: 130 NICIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALRGLMAIPTATADTELQLKEFSML 189
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + +E K + LSMGM+ D + AI+ G+T VRIGS IFGER
Sbjct: 190 NNLFQELKSHYPSVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGERNYAA 239
>gi|148827239|ref|YP_001291992.1| hypothetical protein CGSHiGG_03010 [Haemophilus influenzae PittGG]
gi|148718481|gb|ABQ99608.1| hypothetical protein CGSHiGG_03010 [Haemophilus influenzae PittGG]
Length = 233
Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats.
Identities = 77/232 (33%), Positives = 110/232 (47%), Gaps = 11/232 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYL 176
L V IQ+N E KSGI P + L + GLM IP + F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIPEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 MSDLFEQLKQVLPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGTRDYS 232
>gi|186477265|ref|YP_001858735.1| alanine racemase domain-containing protein [Burkholderia phymatum
STM815]
gi|184193724|gb|ACC71689.1| alanine racemase domain protein [Burkholderia phymatum STM815]
Length = 232
Score = 296 bits (758), Expect = 2e-78, Method: Composition-based stats.
Identities = 80/229 (34%), Positives = 110/229 (48%), Gaps = 9/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + L Q+I +A +A R S++L+AVSK ++ +R A GQ F EN +QEA
Sbjct: 3 DLAHNLDAVHQRIALAARIAGRDPGSIALLAVSKTFPAEDVRAAHVAGQRAFGENYVQEA 62
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + FIG LQSNK + FD + +V R K A LS + + L
Sbjct: 63 LTKIGALSDLRASLAWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDTAPAL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---YLL 177
V +QVN E KSG+ P + D +L + GLM IP G+ + L
Sbjct: 123 NVCLQVNISGEASKSGVTPEEALDVARQVAALPRLRLRGLMAIPEPAGDVEQQRVPHRAL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 183 RELFDRLRAQGLDLDTLSMGMSGDLEAAVLEGATIVRVGTAIFGARDYS 231
>gi|315268478|gb|ADT95331.1| alanine racemase domain protein [Shewanella baltica OS678]
Length = 239
Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats.
Identities = 84/230 (36%), Positives = 122/230 (53%), Gaps = 9/230 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +++I +A R S+ L+AVSK + I A GQ F EN +QE
Sbjct: 10 TIADRLAIAQRRIAQAAQKCARQPSSIRLLAVSKTKPIEDIIAAYQAGQRCFGENYVQEG 69
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K I L+ + D++ FIG LQSNK S + FD + TVSR+K A L+ + + L
Sbjct: 70 AEKIIALKGDFPDIEWHFIGPLQSNKTSIVAQHFDWMHTVSRDKIAQRLNDQRPAELAPL 129
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
+ IQ+N E KSGI Q L Q L + GLM IP A + + F +L
Sbjct: 130 NICIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALRGLMAIPTATADTELQLKEFSML 189
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + +E K + LSMGM+ D + AI+ G+T VRIGS IFGER
Sbjct: 190 NNLFQELKSHYPNVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGERNYAA 239
>gi|260581995|ref|ZP_05849790.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
NT127]
gi|260094885|gb|EEW78778.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
NT127]
Length = 237
Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats.
Identities = 77/233 (33%), Positives = 112/233 (48%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ+ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQIAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQGINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIAERLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYL 176
L V IQ+N E KSG+ P + L + GLM IP + F
Sbjct: 121 LNVLIQINISDEESKSGLQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIFGARNYST 233
>gi|225567964|ref|ZP_03776989.1| hypothetical protein CLOHYLEM_04037 [Clostridium hylemonae DSM
15053]
gi|225163252|gb|EEG75871.1| hypothetical protein CLOHYLEM_04037 [Clostridium hylemonae DSM
15053]
Length = 231
Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 120/229 (52%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ KL+ +++I + A R + V+L+AVSK + +R A G +F ENK+QE
Sbjct: 2 MKEKLENVEERIRAACERAGRNRSEVTLIAVSKTKPVETLREAYGLGVRVFGENKVQELV 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L + D+ IG LQ NKV I+ ++I +V + A + E K + +
Sbjct: 62 DKYGALPE--DIHWHMIGHLQRNKVKYIIDKAELIHSVDSLRLAETIEKEAEKHNITANI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSE 179
I+VN E K G+MP + + V LNV+GLM I P + NP+ + F L +
Sbjct: 120 LIEVNVAREESKFGVMPEELDEIVEKIAGFNHLNVKGLMTIAPYVENPEENRAVFARLRK 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ ++ LSMGMT D+E+A+ GAT VR+G+GIFGER
Sbjct: 180 LSVDIASKNVDNMNMSILSMGMTNDYEVAVEEGATMVRVGTGIFGERDY 228
>gi|325294117|ref|YP_004279981.1| alanine racemase protein [Agrobacterium sp. H13-3]
gi|325061970|gb|ADY65661.1| putative alanine racemase protein [Agrobacterium sp. H13-3]
Length = 219
Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats.
Identities = 115/219 (52%), Positives = 153/219 (69%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +L+ +Q+I +A + R VSLVAVSK D+++I+ + GQ +F EN++QE
Sbjct: 1 MEIEARLEDVRQRIAETAEKSGRKATDVSLVAVSKTFDAQEIQPVIDSGQRVFGENRVQE 60
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW L+ K ++L IG LQSNK ++ V+LFDV+++V REK A LS E +KQ R
Sbjct: 61 AQGKWPALKEKTSGIELHLIGPLQSNKAADAVALFDVVQSVDREKIARALSEECVKQGRS 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L Y+QVNTG E QK+GI P +T FV CR + +L+VEGLMCIPPA NP PHF LL++
Sbjct: 121 LRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLSVEGLMCIPPADENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR+C L KLSMGM+ DFE AI GATSVR+GS IFG R
Sbjct: 181 LARQCGLEKLSMGMSGDFETAIEFGATSVRVGSAIFGAR 219
>gi|170725693|ref|YP_001759719.1| alanine racemase domain-containing protein [Shewanella woodyi ATCC
51908]
gi|169811040|gb|ACA85624.1| alanine racemase domain protein [Shewanella woodyi ATCC 51908]
Length = 244
Score = 295 bits (757), Expect = 3e-78, Method: Composition-based stats.
Identities = 83/227 (36%), Positives = 117/227 (51%), Gaps = 9/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +I +A ++ R D + L+AVSK + I A + GQ F EN +QE
Sbjct: 14 TIADRLADAQHRIIQAAQISSRNSDEIQLLAVSKTKPNTDIIAAYTAGQRHFGENYVQEG 73
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L+ ++ FIG LQSNK + SLFD + T+SREK A L+ + + L
Sbjct: 74 EAKVNALKSSCPEIHWHFIGPLQSNKSKIVASLFDWMHTLSREKIAQRLNEQRPDTLQPL 133
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
V IQVN E KSG ++ + +L + GLM IP A + K F L
Sbjct: 134 NVCIQVNISQESSKSGATVDEVHSLASSISKLPKLKLRGLMAIPTATQDVLLQKAEFKKL 193
Query: 178 SEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E+ A + LSMGM+ D E AI G+T VRIGS IFGER
Sbjct: 194 QELYLNLQATYPDIDTLSMGMSNDLEQAIEHGSTMVRIGSAIFGERD 240
>gi|229845488|ref|ZP_04465617.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
6P18H1]
gi|89892365|gb|ABD78959.1| HI0090-like protein [Haemophilus influenzae]
gi|229811591|gb|EEP47291.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
6P18H1]
Length = 233
Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats.
Identities = 78/232 (33%), Positives = 112/232 (48%), Gaps = 11/232 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + QKIE + AKR +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIHQKIETACEEAKRNQNTVKLLAVSKTKPISAILSAYQAGQRTFGENYVQE 60
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K ++ +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQDINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYL 176
L V IQ+N E KSG+ P + L + GLM IP + F
Sbjct: 121 LNVLIQINISDEESKSGLQPEEMLTLAKHIENLPHLCLRGLMAIPAPTNKIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKYGSTMVRIGTAIFGARNYS 232
>gi|66043744|ref|YP_233585.1| hypothetical protein Psyr_0477 [Pseudomonas syringae pv. syringae
B728a]
gi|63254451|gb|AAY35547.1| Protein of unknown function UPF0001 [Pseudomonas syringae pv.
syringae B728a]
Length = 228
Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats.
Identities = 79/224 (35%), Positives = 109/224 (48%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A+R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAAERDPASVGLLAVSKTKPASDLREAYNAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L + FIG +QSNK I FD + +V R K A LS + + L
Sbjct: 63 LGKQLELSDLP-LCWHFIGPIQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
+ IQVN E KSG P +L + GLM IP +P F +
Sbjct: 122 ICIQVNVSGEASKSGCTPQDLPALAATIIALPRLRLRGLMAIPEPTDDPAAQDASFAAVR 181
Query: 179 EIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 ALQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|212709355|ref|ZP_03317483.1| hypothetical protein PROVALCAL_00391 [Providencia alcalifaciens DSM
30120]
gi|212688267|gb|EEB47795.1| hypothetical protein PROVALCAL_00391 [Providencia alcalifaciens DSM
30120]
Length = 230
Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 103/230 (44%), Gaps = 8/230 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L ++I +A R ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 1 MTIQKNLSDVTERIRLAATECHRSPQDITLLAVSKTKPCEAIMEAIEAGQRQFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + D+ FIG LQSNK + FD T+ R K A L+ + + L
Sbjct: 61 GVEKIQYFSERNDLVWHFIGPLQSNKSRLVAEHFDWFHTLDRAKIAQRLNEQRPQDKAPL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQ+N E KSGI + + Q L + GLM IP + + ++
Sbjct: 121 NVLIQINISDENSKSGITLEEVNELAAQVAQLPNLVLRGLMTIPAPETDYERQCAAFRQM 180
Query: 181 ---ARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ K LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 EFAFEQLKASYSTVDTLSMGMTDDMRAAIHCGSTLVRIGTAIFGARQYHN 230
>gi|190893971|ref|YP_001980513.1| alanine racemase [Rhizobium etli CIAT 652]
gi|190699250|gb|ACE93335.1| putative alanine racemase protein [Rhizobium etli CIAT 652]
Length = 219
Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats.
Identities = 118/219 (53%), Positives = 152/219 (69%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I A RP SV LVAVSK +++ IR A+ GQ IF EN++QE
Sbjct: 1 MELQERLNDVRSRIAAGERAAGRPAGSVRLVAVSKTFEAEAIRPAIDAGQRIFGENRVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E D++L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q R
Sbjct: 61 SQGKWPVLKAENPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQDRT 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y+QVNTG E QK+GI P++T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 PRLYVQVNTGLEPQKAGIAPDETPAFVTLCRDELGLSIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+E AIA GATSVRIGS IFG R
Sbjct: 181 LASKCGVEKLSMGMSGDYETAIAFGATSVRIGSAIFGAR 219
>gi|83648989|ref|YP_437424.1| TIM-barrel fold family protein [Hahella chejuensis KCTC 2396]
gi|83637032|gb|ABC32999.1| predicted enzyme with a TIM-barrel fold [Hahella chejuensis KCTC
2396]
Length = 227
Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats.
Identities = 89/227 (39%), Positives = 117/227 (51%), Gaps = 13/227 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + ++ Q+I+N+ A RP DSV+L+AVSK ++ IR A G F EN LQEA
Sbjct: 3 SIADNIKTVSQRIQNATKSAARPADSVTLLAVSKTKPAEAIRAAYDAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L + FIG LQSNK + LF + T+ REK A LS + + + L
Sbjct: 63 QDKIAQL-SNLAITWHFIGPLQSNKTRPVAELFQWVHTLDREKIARRLSEQRPEGTPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNP---------K 171
V IQVN E KSG+ P + + L + GLMCIP P+ G+
Sbjct: 122 VCIQVNINDESSKSGVTPGEIAPLAEIVSALPGLRLRGLMCIPDPSQGDEALASTFKELN 181
Query: 172 PHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
HF L LSMGM+ D E AIA+G+T VRIGS IFG R
Sbjct: 182 RHFAALQSRFDSV--DTLSMGMSDDMEAAIAAGSTIVRIGSAIFGAR 226
>gi|86359693|ref|YP_471585.1| hypothetical protein RHE_CH04115 [Rhizobium etli CFN 42]
gi|86283795|gb|ABC92858.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 219
Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats.
Identities = 117/219 (53%), Positives = 151/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I A RP SV LVAVSK +++ IR A+ GQ IF EN++QE
Sbjct: 1 MDLQERLNDVRSRIAAGERQAGRPAGSVQLVAVSKTFEAEAIRPAIDAGQRIFGENRVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E D++L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q R
Sbjct: 61 SQGKWPVLKAENPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQDRT 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y+QVNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 PRLYVQVNTGLEPQKAGIAPDDTPAFVTLCRDELGLSIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LASKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGAR 219
>gi|187922723|ref|YP_001894365.1| alanine racemase domain protein [Burkholderia phytofirmans PsJN]
gi|187713917|gb|ACD15141.1| alanine racemase domain protein [Burkholderia phytofirmans PsJN]
Length = 232
Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats.
Identities = 80/230 (34%), Positives = 110/230 (47%), Gaps = 9/230 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + L+ +Q+I +A +A R SV L+AVSK ++ +R A + GQ F EN +QEA
Sbjct: 3 DLIHNLEAVQQRIAMAAHVAGRDTRSVHLLAVSKTFPAEDVRAAYAAGQRAFGENYVQEA 62
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L ++ FIG LQSNK + FD + +V R K A LS + L
Sbjct: 63 LTKIEALADLRATLEWHFIGPLQSNKTRPVAEQFDWVHSVDRLKIAQRLSEQRPDNLPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---YLL 177
V +QVN E KSG+ + + +LN+ GLM IP G L
Sbjct: 123 NVCLQVNISGEASKSGVSIPEAVEVAQAIAALPKLNLRGLMAIPEPAGGIDEQRVPHRHL 182
Query: 178 SEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
E+ +L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 183 RELFERLCNDGLELDTLSMGMSSDLEAAVLEGATIVRVGTAIFGARDYSN 232
>gi|332142462|ref|YP_004428200.1| alanine racemase domain protein [Alteromonas macleodii str. 'Deep
ecotype']
gi|327552484|gb|AEA99202.1| alanine racemase domain protein [Alteromonas macleodii str. 'Deep
ecotype']
Length = 232
Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats.
Identities = 74/229 (32%), Positives = 111/229 (48%), Gaps = 8/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L ++ I+ +A A RP +SV L+AVSK I A GQ +F EN +QE
Sbjct: 3 TIAERLNSARKGIDQAANSAHRPPNSVKLLAVSKTKPVSDIIEAYEAGQRMFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L +++ IG +QSNK + FD +++V REK A L+ + + L
Sbjct: 63 VEKVQELSNLDNIEWHMIGPIQSNKTKVVAEHFDWVQSVDREKIARRLNEQRPESLPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
V IQVN E KSG+ ++ V + +L + GLM IP P + L
Sbjct: 123 VCIQVNVDDEDSKSGVSLSELASLVEFVSSQERLCLRGLMAIPKANPDDEQQRQTLSKLK 182
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
E+ LS+GM+ D AI G+T VR+G+ IFG+R
Sbjct: 183 ELFDHYHTSLSNFDTLSVGMSSDMVEAIHHGSTMVRVGTAIFGKRDYPN 231
>gi|325263919|ref|ZP_08130652.1| pyridoxal phosphate enzyme, YggS family [Clostridium sp. D5]
gi|324030957|gb|EGB92239.1| pyridoxal phosphate enzyme, YggS family [Clostridium sp. D5]
Length = 232
Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats.
Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ +QKI+ + A R ++ V+L+AVSK ++ A G IF ENK+QE
Sbjct: 2 LKEQLEEVEQKIQAACDRAGRKREEVTLIAVSKTKPIAVLQEAYDAGVRIFGENKVQELT 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L D+ IG LQ+NKV IV ++I +V K A ++ E K++ +
Sbjct: 62 DKYDALPD--DIHWHMIGHLQTNKVKYIVDKAELIHSVDSLKLAQVIEKEAEKKNCTARI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
I+VN E K G+ ++ F+ + V GLM I P + NP +P F L +
Sbjct: 120 LIEVNVAGEESKFGLNVDEVIPFIEKIASFKHIRVCGLMTIAPFVENPEENRPIFENLHK 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ ++ LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 180 LSVDIKNKNIDNVNVSILSMGMTNDYEVAIEEGATMVRVGTGIFGARDY 228
>gi|237807739|ref|YP_002892179.1| alanine racemase domain-containing protein [Tolumonas auensis DSM
9187]
gi|237500000|gb|ACQ92593.1| alanine racemase domain protein [Tolumonas auensis DSM 9187]
Length = 233
Score = 295 bits (755), Expect = 4e-78, Method: Composition-based stats.
Identities = 78/231 (33%), Positives = 116/231 (50%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ ++L K++I + A A R + + L+AVSK + I+ A GQ +F E+ +QEA
Sbjct: 3 DIESRLLAIKEQITSHARQAGRSPNEIKLLAVSKTKPVEAIQEAYQAGQRLFGESYVQEA 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K L D ++ FIG LQSNK + FD + ++ REKTA L+ +
Sbjct: 63 ITKIQQLNNSSDYAGIEWHFIGPLQSNKTKLVAEHFDWVHSIDREKTAQRLNEQRPANLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFY 175
L V IQVN E KSGI ++ + + L + GLM I + + +F
Sbjct: 123 ALNVCIQVNISGERTKSGITADEVFGLAGIISEFPHLKLRGLMTIAENTDDLDVVRDNFL 182
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ E+ K + LSMGMT D +AI+SG+T VRIG+ IFG R +
Sbjct: 183 HMQELFNRLKNQYPSVDTLSMGMTDDMSVAISSGSTMVRIGTAIFGSREYK 233
>gi|197301725|ref|ZP_03166795.1| hypothetical protein RUMLAC_00451 [Ruminococcus lactaris ATCC
29176]
gi|197299165|gb|EDY33695.1| hypothetical protein RUMLAC_00451 [Ruminococcus lactaris ATCC
29176]
Length = 230
Score = 295 bits (755), Expect = 4e-78, Method: Composition-based stats.
Identities = 77/229 (33%), Positives = 119/229 (51%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++LQ +++I+ + A R ++ V+L+AVSK + ++ A G IF ENK+QE
Sbjct: 2 LKDQLQEVEKRIQAACDRAGRKREEVTLIAVSKTKPVETLQEAYDLGVRIFGENKVQELT 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L K D+ IG LQ+NKV I+ ++I +V K A + E K +
Sbjct: 62 AKYEALPK--DIHWHMIGHLQTNKVKYIIDKAELIHSVDSLKLAETIEKEAAKHDLIADI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSE 179
++VN E K G+ + FV + V GLM I P + +P+ + F L +
Sbjct: 120 LVEVNVAEEESKFGMKMEEVIPFVEKVSAFPHVRVRGLMTIAPFVEDPEENRSIFADLHK 179
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + K ++ LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 180 LYIDIKKKNHDNDTVSVLSMGMTNDYEVAIEEGATMVRVGTGIFGARNY 228
>gi|160876289|ref|YP_001555605.1| alanine racemase domain-containing protein [Shewanella baltica
OS195]
gi|160861811|gb|ABX50345.1| alanine racemase domain protein [Shewanella baltica OS195]
Length = 232
Score = 295 bits (755), Expect = 4e-78, Method: Composition-based stats.
Identities = 84/230 (36%), Positives = 122/230 (53%), Gaps = 9/230 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +++I +A R S+ L+AVSK + I A GQ F EN +QE
Sbjct: 3 TIADRLAIAQRRIAQAAQKCARQPSSIRLLAVSKTKPIEDIIAAYQAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K I L+ + D++ FIG LQSNK S + FD + TVSR+K A L+ + + L
Sbjct: 63 AEKIIALKGDFPDIEWHFIGPLQSNKTSIVAQHFDWMHTVSRDKIAQRLNDQRPAELAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
+ IQ+N E KSGI Q L Q L + GLM IP A + + F +L
Sbjct: 123 NICIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALRGLMAIPTATADTELQLKEFSML 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + +E K + LSMGM+ D + AI+ G+T VRIGS IFGER
Sbjct: 183 NNLFQELKSHYPNVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGERNYAA 232
>gi|317493543|ref|ZP_07951964.1| YggS family pyridoxal phosphate enzyme [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316918486|gb|EFV39824.1| YggS family pyridoxal phosphate enzyme [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 237
Score = 295 bits (755), Expect = 4e-78, Method: Composition-based stats.
Identities = 77/232 (33%), Positives = 106/232 (45%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L+ + +I +A R + V+L+AVSK I ++ GQ F EN +QE
Sbjct: 4 NIQQNLEAVRSRISAAAQDCGRSPEEVTLLAVSKTKPVSDIEETIAAGQRAFGENYVQEG 63
Query: 62 KKKWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + +++ FIG LQSNK + FD I TV R K A LS +
Sbjct: 64 VSKIQYFAQTPYADELEWHFIGPLQSNKSRLVAEHFDWIHTVDRVKIAQRLSEQRPADKA 123
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
L V IQ+N E KSGI V + L + GLM IP +P K F
Sbjct: 124 ALNVLIQINISDESSKSGIDLEALDALVAQVAEMPNLRLRGLMAIPAPEEDPVKQKAVFD 183
Query: 176 LLSEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + + + LSMGMT D AI +G+T VRIG+ IFG R T
Sbjct: 184 RMEQAFLALKKQYPHIDTLSMGMTHDMAAAITAGSTMVRIGTAIFGARDYGT 235
>gi|302189818|ref|ZP_07266491.1| hypothetical protein Psyrps6_25881 [Pseudomonas syringae pv.
syringae 642]
Length = 228
Score = 295 bits (755), Expect = 4e-78, Method: Composition-based stats.
Identities = 78/224 (34%), Positives = 109/224 (48%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A+R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAAERDPASVGLLAVSKTKPASDLREAYTAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L + FIG +QSNK I FD + +V R K A LS + + L
Sbjct: 63 LGKQLELSDLP-LCWHFIGPIQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
+ IQVN E KSG P +L + GLM IP + F +
Sbjct: 122 ICIQVNVSGEASKSGCTPQDLPALAAAIMALPRLRLRGLMAIPEPTDDSAAQNASFAAVR 181
Query: 179 EIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ ++ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 TLQQQLNLPLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|78222116|ref|YP_383863.1| hypothetical protein Gmet_0896 [Geobacter metallireducens GS-15]
gi|78193371|gb|ABB31138.1| protein of unknown function UPF0001 [Geobacter metallireducens
GS-15]
Length = 231
Score = 294 bits (754), Expect = 5e-78, Method: Composition-based stats.
Identities = 83/232 (35%), Positives = 117/232 (50%), Gaps = 13/232 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L +++I A A R +SV LVAVSK ++ + A GQ +F EN +QE
Sbjct: 1 MTIASNLIHLQERIATVARRAGRDPESVRLVAVSKTKPAEAVEDAARAGQRLFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K +R+ V+ FIG+LQSNKV +I L +I +V R A + + K
Sbjct: 61 FTAKAGEVRE--PVEWHFIGALQSNKVRQIAGLVTMIHSVDRLSLAQEIERQWAKLDTTC 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V IQVN E KSG + V L V GLM +PP +P +P+F L
Sbjct: 119 DVLIQVNIAGEATKSGTTAGELLTLVREVALLPHLRVRGLMTMPPFFDDPEGARPYFREL 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A + +LSMGM+ DFE A+ GAT VRIG+ +FGER +
Sbjct: 179 KRLAGVVAAAGIPGVVMDELSMGMSGDFEAAVEEGATLVRIGTSLFGEREYR 230
>gi|153810902|ref|ZP_01963570.1| hypothetical protein RUMOBE_01286 [Ruminococcus obeum ATCC 29174]
gi|149833298|gb|EDM88380.1| hypothetical protein RUMOBE_01286 [Ruminococcus obeum ATCC 29174]
Length = 230
Score = 294 bits (754), Expect = 5e-78, Method: Composition-based stats.
Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ ++ IE + R V+L++VSK ++ A G F ENK+QE
Sbjct: 2 ITENLEQVRKNIEEACRAVNRDPGEVTLISVSKTKPVSMLQEAYDAGSRDFGENKVQEIM 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L D++ IG LQ NKV IV +I +V + A + E K + +P+
Sbjct: 62 DKYPQLPS--DIRWHMIGHLQRNKVKYIVDKVALIHSVDSLRLAETIENEAAKHNVTVPI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN E K G+ + V +N++GLM I P + +P+ + + ++ +
Sbjct: 120 LIEVNVAQEESKFGLKTEEVLSLVESVAALPHINIKGLMTIAPYVEDPEENRGIFRQLKK 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ LSMGMT D+++A+ GAT VR+G+GIFGER
Sbjct: 180 LSVDIAAKNINNVNMSVLSMGMTGDYQVAVQEGATMVRVGTGIFGERDYS 229
>gi|307728514|ref|YP_003905738.1| alanine racemase domain-containing protein [Burkholderia sp.
CCGE1003]
gi|307583049|gb|ADN56447.1| alanine racemase domain protein [Burkholderia sp. CCGE1003]
Length = 232
Score = 294 bits (754), Expect = 5e-78, Method: Composition-based stats.
Identities = 79/229 (34%), Positives = 111/229 (48%), Gaps = 9/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + L+ +Q+I +A +A R S++L+AVSK ++ +R A + GQ F EN +QEA
Sbjct: 3 DLIHNLEAVQQRIATAAHVAGRDARSIALLAVSKTFPAEDVRAAHAAGQRAFGENYVQEA 62
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L ++ FIG LQSNK + FD + +V R K A LS + + L
Sbjct: 63 LTKIEALGDLRTSLEWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPEHLPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---YLL 177
V +QVN E KSG+ + +L + GLM IP GN L
Sbjct: 123 NVCLQVNISGEASKSGVSAEEALQVAKEIAALPRLRLRGLMAIPEPAGNIDQQRVPHRRL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 183 RELFERLRDDGLPLDTLSMGMSSDLEAAVLEGATIVRVGTAIFGARDYS 231
>gi|301168748|emb|CBW28339.1| predicted enzyme [Haemophilus influenzae 10810]
Length = 237
Score = 294 bits (754), Expect = 6e-78, Method: Composition-based stats.
Identities = 77/233 (33%), Positives = 110/233 (47%), Gaps = 11/233 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEYFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYL 176
L V IQ+N E KSGI P + L + GLM IP + F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+S++ + K + LSMGMT D AI +T VRIG+ IFG R T
Sbjct: 181 MSDLFEQLKQVLPNQQIDTLSMGMTDDMPSAIKCSSTMVRIGTSIFGARNYST 233
>gi|261346263|ref|ZP_05973907.1| pyridoxal phosphate enzyme, YggS family [Providencia rustigianii
DSM 4541]
gi|282565572|gb|EFB71107.1| pyridoxal phosphate enzyme, YggS family [Providencia rustigianii
DSM 4541]
Length = 230
Score = 294 bits (754), Expect = 6e-78, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 102/230 (44%), Gaps = 8/230 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ N + +I +A R ++L+AVSK + I A+ G F EN +QE
Sbjct: 1 MTIQNNIAEVTARINLAATECHRSPQEITLLAVSKTKPCEAILEAIDAGLRQFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D+ FIG LQSNK + FD T+ R K A L+ + + L
Sbjct: 61 GVEKIQYFADRTDLVWHFIGPLQSNKSRLVAEHFDWFHTLDRAKIAQRLNEQRPQNKAPL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQ+N E KSGI Q L + GLM IP + + F +
Sbjct: 121 NVLIQINISDENSKSGIKLEDVDALAAQVAQLPNLVLRGLMTIPAPETDYERQCAAFRQM 180
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ ++ K + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 EQAFQQLKNNYPTVDTLSMGMTDDMAAAIHCGSTLVRIGTAIFGARQYHN 230
>gi|218132469|ref|ZP_03461273.1| hypothetical protein BACPEC_00328 [Bacteroides pectinophilus ATCC
43243]
gi|217992579|gb|EEC58581.1| hypothetical protein BACPEC_00328 [Bacteroides pectinophilus ATCC
43243]
Length = 230
Score = 294 bits (754), Expect = 6e-78, Method: Composition-based stats.
Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L ++ I + + R + V+L+AVSK I + G F ENK+QE
Sbjct: 2 LSDNLHEVQENIRKACERSGRNPEDVTLIAVSKTKPVSDIEQIYAAGIREFGENKVQEMN 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L D+ IG LQ NKV IV +I +V + A +S E +K++ + +
Sbjct: 62 DKQKVLPG--DINWHMIGHLQRNKVKYIVDNVAMIHSVDSVRLAEEISKEAVKKNVAVDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
++VN E K G+ FV + +N++GLM P + NP + +F L +
Sbjct: 120 LVEVNVAKEESKFGLYTEDVGQFVEQISKLPGINIKGLMTSAPFVDNPEDNRQYFKKLKD 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + LSMGMT D+ +A+ GAT VR+G+ IFG R
Sbjct: 180 LSVDINAKNIDNVHMDFLSMGMTNDYVVAVEEGATHVRVGTAIFGHRDY 228
>gi|91228687|ref|ZP_01262601.1| FkuA [Vibrio alginolyticus 12G01]
gi|91187758|gb|EAS74076.1| FkuA [Vibrio alginolyticus 12G01]
Length = 233
Score = 294 bits (753), Expect = 7e-78, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 109/231 (47%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +I R +SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITSQIRYDEQKCGRTPESVQLLAVSKTKPVEAILEAYQAGQTAFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + ++ FIG +QSNK + FD + T+ R K A L+ + + +
Sbjct: 63 VSKVQHFSEHYPDNRIEWHFIGPIQSNKSRLVAEHFDWVHTIDRTKIAQRLNDQRPSELK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFY 175
L V IQVNT E KSG+ + + L + L + GLM IP + + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGVTEAEVFELAELISRLPNLTLRGLMSIPANVSDYESQLREFQ 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+ + + ++ LSMGM+ D AI +G+T VRIG+ IFG R
Sbjct: 183 KLATLKQTLEAQFPEIDTLSMGMSGDMTAAIEAGSTMVRIGTAIFGARDYS 233
>gi|197284237|ref|YP_002150109.1| amino acid racemase [Proteus mirabilis HI4320]
gi|227357860|ref|ZP_03842208.1| amino acid racemase [Proteus mirabilis ATCC 29906]
gi|194681724|emb|CAR40875.1| putative amino acid racemase [Proteus mirabilis HI4320]
gi|227161970|gb|EEI46988.1| amino acid racemase [Proteus mirabilis ATCC 29906]
Length = 232
Score = 294 bits (753), Expect = 7e-78, Method: Composition-based stats.
Identities = 74/229 (32%), Positives = 103/229 (44%), Gaps = 8/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L + I+ +A R D ++L+AVSK I A++CGQ F EN +QE
Sbjct: 3 TIKQNLVNVRSHIDTAAQKCGRSPDEITLLAVSKTKPVSDIEKAIACGQTEFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + ++ FIG LQSNK + F T+ R K A LS + L
Sbjct: 63 VDKISYFAENKNLVWHFIGPLQSNKTRLVAEHFAWCHTIDRLKIAQRLSDQRPTTLPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQ+N E KSGI + + + GLM IP + +L ++
Sbjct: 123 VLIQINISDENSKSGISLTELDGLAAQISILPGIKLRGLMAIPAPENDYNKQVEVLEKMH 182
Query: 182 RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ K + LSMGMT D E AIA G+T VRIG+ IFG R
Sbjct: 183 QAFKQLQNQYPDIDTLSMGMTGDMEAAIACGSTLVRIGTAIFGARDYAN 231
>gi|295675574|ref|YP_003604098.1| alanine racemase domain protein [Burkholderia sp. CCGE1002]
gi|295435417|gb|ADG14587.1| alanine racemase domain protein [Burkholderia sp. CCGE1002]
Length = 240
Score = 294 bits (753), Expect = 8e-78, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 107/227 (47%), Gaps = 9/227 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ L ++I +A A R SV L+AVSK + +R A + GQ F EN +QEA
Sbjct: 13 AHNLADVHERIAKAAQAAGRDAQSVMLLAVSKTFPADAVRDAHAAGQRAFGENYVQEALD 72
Query: 64 KWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ FIG LQSNK + FD + +V R K A LS + L V
Sbjct: 73 KIQTLADLRASLEWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDNLPPLNV 132
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSE 179
+QVN E KSG+ P++ +L + GLM IP G+ + L E
Sbjct: 133 CLQVNVSGEASKSGVAPDEAAAIAHQITALPKLKLRGLMSIPEPAGDLDAQRAPHRQLRE 192
Query: 180 IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 193 LFERLRNDGLALDTLSMGMSADLEAAVLEGATIVRVGTAIFGARDYS 239
>gi|152978475|ref|YP_001344104.1| alanine racemase domain-containing protein [Actinobacillus
succinogenes 130Z]
gi|150840198|gb|ABR74169.1| alanine racemase domain protein [Actinobacillus succinogenes 130Z]
Length = 232
Score = 293 bits (752), Expect = 8e-78, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 107/231 (46%), Gaps = 11/231 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L+ Q+I + + A R K +V L+AVSK I+ A+ GQ F EN +QE
Sbjct: 1 MTIRQNLEHIHQQIGQACLAAGRDKSAVKLLAVSKTKPVTDIQAAIDAGQRAFGENYVQE 60
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K K +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQFFAHKYPELEWHFIGPLQSNKTRLVAEYFDWMQTLDRAKIADRLNDQRPADKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH------ 173
L V IQ+N E KSGI P + + L + GLM IP +
Sbjct: 121 LNVLIQINISDESSKSGIQPQEMAALAKHIENRPHLCLRGLMAIPAPTDDIAEQEKALTA 180
Query: 174 ----FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L + + LSMGMT D A+ G+T VRIG+ IFG R
Sbjct: 181 MKKLFEQLQTLCPNRPIDTLSMGMTNDMASAVKCGSTMVRIGTAIFGARNY 231
>gi|163757457|ref|ZP_02164546.1| hypothetical protein HPDFL43_18642 [Hoeflea phototrophica DFL-43]
gi|162284959|gb|EDQ35241.1| hypothetical protein HPDFL43_18642 [Hoeflea phototrophica DFL-43]
Length = 226
Score = 293 bits (752), Expect = 8e-78, Method: Composition-based stats.
Identities = 109/221 (49%), Positives = 142/221 (64%), Gaps = 1/221 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L I ++ A RP SV LVAVSK ++IR ++ G+ +F EN++QE
Sbjct: 5 MDATKNLAKVLADIADAETSAGRPAGSVGLVAVSKTKPVEEIRPVIAAGRRVFGENRVQE 64
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW L+ E D++L IG LQSNK ++ V+LFDVI+TV REK A ++ E+ KQ R
Sbjct: 65 AQSKWPQLKAETPDLELHLIGPLQSNKTADAVALFDVIQTVDREKIAREIAREIKKQGRA 124
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++IQVNTG E QK+GI P+ FV LCR + L + GLMCIPP NP PHF LL+
Sbjct: 125 PGLFIQVNTGSEPQKAGIEPDAAAAFVDLCRSELGLTIRGLMCIPPFDENPGPHFALLAN 184
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
IARE L +LSMGM+ D+ +AIA GAT VR+GS IFG R
Sbjct: 185 IAREAGLEELSMGMSDDYPIAIAFGATQVRVGSAIFGARNT 225
>gi|258543383|ref|YP_003188816.1| hypothetical protein APA01_23230 [Acetobacter pasteurianus IFO
3283-01]
gi|256634461|dbj|BAI00437.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01]
gi|256637519|dbj|BAI03488.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03]
gi|256640571|dbj|BAI06533.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07]
gi|256643628|dbj|BAI09583.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22]
gi|256646683|dbj|BAI12631.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26]
gi|256649736|dbj|BAI15677.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32]
gi|256652724|dbj|BAI18658.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655780|dbj|BAI21707.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12]
Length = 232
Score = 293 bits (752), Expect = 9e-78, Method: Composition-based stats.
Identities = 97/218 (44%), Positives = 136/218 (62%), Gaps = 1/218 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++L +Q I+ SA A R SV+LVAVSK + ++ AL+ GQ +F EN++QEA
Sbjct: 12 LADRLAAVRQNIDASAHAAGRDPASVTLVAVSKFHPLESVQEALAAGQRVFGENRVQEAA 71
Query: 63 KKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ LR D++L IG LQ+NK + V + DVIE++ R + A L K+ R
Sbjct: 72 SKFPALRATYPDLRLHLIGGLQTNKARDAVRIADVIESLDRPELAEALLKAADKEGRLPE 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ I+VNTG E QK G+ + F+ CRQ++ ++GLMCIPPAM +P PHF LL +A
Sbjct: 132 LLIEVNTGDEPQKFGVPREKADSFIRTCRQQFGDKLQGLMCIPPAMQDPVPHFRLLRSMA 191
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+E L +SMGM+ D+ AIA GAT VR+G+ IFG RP
Sbjct: 192 QEHGLPVISMGMSADYPQAIAEGATLVRVGTAIFGPRP 229
>gi|218510282|ref|ZP_03508160.1| putative alanine racemase protein [Rhizobium etli Brasil 5]
Length = 219
Score = 293 bits (752), Expect = 9e-78, Method: Composition-based stats.
Identities = 117/219 (53%), Positives = 151/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + KI A RP SV LVAVSK +++ IR A+ GQ +F EN++QE
Sbjct: 1 MELQERLNDVRSKIAAGERAAGRPAGSVRLVAVSKTFEAEAIRPAIDAGQRVFGENRVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E D++L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q R
Sbjct: 61 SQGKWPVLKAENPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQDRT 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y+QVNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 PRLYVQVNTGLEPQKAGIAPDDTPAFVTLCRGELGLSIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LASKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGAR 219
>gi|117919643|ref|YP_868835.1| hypothetical protein Shewana3_1194 [Shewanella sp. ANA-3]
gi|117611975|gb|ABK47429.1| Protein of unknown function UPF0001 [Shewanella sp. ANA-3]
Length = 238
Score = 293 bits (752), Expect = 9e-78, Method: Composition-based stats.
Identities = 80/228 (35%), Positives = 112/228 (49%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L V + +I +A R S+ L+AVSK + I A + GQ F EN +QE
Sbjct: 3 TIADRLAVAQSRIAQAAQKCARLPHSIRLLAVSKTKPMEDIIAAYNAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L+ D++ FIG LQSNK + + FD + T+SREK A L+ + L
Sbjct: 63 VTKIEALKATHPDIEWHFIGPLQSNKTALVAQHFDWMHTLSREKIAQRLNEQRPAHLAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
V IQ+N E KSGI Q Q L + GLM IP A + L
Sbjct: 123 KVCIQINISDEYTKSGIDAEQMLPLADSISQLPHLQLRGLMAIPSATNDIAQQTDELSKL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ K + LSMGM+ D ++A+ G+T VRIGS IFGER
Sbjct: 183 KQLFDTLKQHYPAVDTLSMGMSNDLDVAVECGSTMVRIGSAIFGERDY 230
>gi|308050653|ref|YP_003914219.1| alanine racemase domain protein [Ferrimonas balearica DSM 9799]
gi|307632843|gb|ADN77145.1| alanine racemase domain protein [Ferrimonas balearica DSM 9799]
Length = 227
Score = 293 bits (752), Expect = 1e-77, Method: Composition-based stats.
Identities = 82/225 (36%), Positives = 114/225 (50%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L + +I+++A A R +S++L+AVSK ++ IR A G F EN LQE
Sbjct: 3 TITERLIEAQARIDSAAAQAGRVGESITLLAVSKTKPAEMIREAYLAGARDFGENYLQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L+ D++ FIG LQSNK + FD I +V R K A LS + L
Sbjct: 63 VDKIDALQD-LDIRWHFIGPLQSNKTRPVAERFDWIHSVDRLKIAQRLSEQRPSGKAPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
V IQVN E KSG+ P Q + L + GLM IP +P+ L+++
Sbjct: 122 VCIQVNISAEQSKSGVNPAQLPELAAAVAALPGLRLRGLMAIPAPESDPEKQRQALAQMK 181
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A L LSMGM+ D E A+A G+T VRIG+ IFG R
Sbjct: 182 QLFDALKAEHPGLDTLSMGMSDDLEAAVAEGSTMVRIGTAIFGTR 226
>gi|269965745|ref|ZP_06179842.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
gi|269829613|gb|EEZ83850.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
Length = 233
Score = 293 bits (752), Expect = 1e-77, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 109/231 (47%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +I R +SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITSQIRYDEQKCGRTPESVQLLAVSKTKPVEAILEAYQAGQTAFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + ++ FIG +QSNK + FD + T+ R K A L+ + + +
Sbjct: 63 VSKVQHFAEHYPDNRIEWHFIGPIQSNKSRLVAEHFDWVHTIDRTKIAQRLNDQRPSELK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFY 175
L V IQVNT E KSG+ + + L + L + GLM IP + + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGVTEAEVFELAELISRLPNLTLRGLMSIPANVSDYESQLREFQ 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+ + + ++ LSMGM+ D AI +G+T VRIG+ IFG R
Sbjct: 183 KLATLKQTLEAQFPEIDTLSMGMSGDMTAAIEAGSTMVRIGTAIFGARDYS 233
>gi|153001553|ref|YP_001367234.1| alanine racemase domain-containing protein [Shewanella baltica
OS185]
gi|151366171|gb|ABS09171.1| alanine racemase domain protein [Shewanella baltica OS185]
Length = 232
Score = 293 bits (752), Expect = 1e-77, Method: Composition-based stats.
Identities = 85/230 (36%), Positives = 123/230 (53%), Gaps = 9/230 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +++I +A R S+SL+AVSK + I A GQ F EN +QE
Sbjct: 3 TIADRLAIAQRRIAQAAQKCARQPSSISLLAVSKTKPIEDIIAAYQAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K I L+ + D++ FIG LQSNK S + FD + TVSR+K A L+ + + L
Sbjct: 63 AEKIIALKGDFPDIEWHFIGPLQSNKTSIVAQHFDWMHTVSRDKIAQRLNDQRPAELAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
+ IQ+N E KSGI Q L Q L + GLM IP A + + F +L
Sbjct: 123 NICIQINISAEDTKSGIDAAQMLPLAELIAQLPNLALRGLMAIPTATADTELQLKEFSML 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + +E K + LSMGM+ D + AI+ G+T VRIGS IFGER
Sbjct: 183 NNLFQELKSHYPNVDTLSMGMSNDLDAAISCGSTMVRIGSAIFGERNYAA 232
>gi|1730919|sp|P52055|YPI1_VIBAL RecName: Full=UPF0001 protein in pilT-proC intergenic region;
AltName: Full=ORF1
gi|801880|dbj|BAA09062.1| FkuA [Vibrio alginolyticus]
Length = 233
Score = 293 bits (752), Expect = 1e-77, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 109/231 (47%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +I R +SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITSQIRYDEQKCGRTPESVQLLAVSKTKPVEAILEAYQAGQTAFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + ++ FIG +QSNK + FD + T+ R K A L+ + + +
Sbjct: 63 VSKVQHFAEHYPDNRIEWHFIGPIQSNKSRLVAEHFDWVHTIDRTKIAQRLNDQRPSELK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFY 175
L V IQVNT E KSG+ + + L + L + GLM IP + + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGVTEAEVFELAELISRLPNLTLRGLMSIPANVSDYESQLHEFQ 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+ + + ++ LSMGM+ D AI +G+T VRIG+ IFG R
Sbjct: 183 KLATLKQTLEAQFPEIDTLSMGMSGDMTAAIEAGSTMVRIGTAIFGARDYS 233
>gi|119899756|ref|YP_934969.1| hypothetical protein azo3467 [Azoarcus sp. BH72]
gi|119672169|emb|CAL96083.1| conserved hypothetical protein [Azoarcus sp. BH72]
Length = 237
Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats.
Identities = 78/226 (34%), Positives = 112/226 (49%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ LQ ++I ++A A R +V L+AVSK ++ +R A + GQ F EN +QEA
Sbjct: 3 SISANLQAVSERIRDAARAAGRDPAAVRLLAVSKTWPAQSVREAAAAGQRAFGENYVQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + + ++ FIG LQSNK + F + ++ R K A LS + L
Sbjct: 63 LAKLAEV-DDPALEWHFIGPLQSNKTRAVAQHFAWVHSIDRLKLAERLSAQRDVHLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
V +QVN E KSG+ P++ +L + GLMCIP + + F L
Sbjct: 122 VCLQVNVSGEDSKSGVAPDEVLPLARGVAALPRLVLRGLMCIPEPTDDVTLQRRRFATLR 181
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ L LSMGM+ D E A+A GAT VR+G+ IFG RP
Sbjct: 182 GLRDTLAAEGIVLDTLSMGMSHDLEAAVAEGATLVRVGTAIFGARP 227
>gi|307132430|ref|YP_003884446.1| putative enzyme [Dickeya dadantii 3937]
gi|306529959|gb|ADM99889.1| predicted enzyme [Dickeya dadantii 3937]
Length = 244
Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats.
Identities = 75/231 (32%), Positives = 106/231 (45%), Gaps = 11/231 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ LQ +Q+I +A R + ++L+AVSK I A++ GQ F EN +QE
Sbjct: 11 VQQNLQDVRQRISAAAERCGRAPEEITLLAVSKTKPVSAIEEAIAAGQRAFGENYVQEGV 70
Query: 63 KKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + + ++ FIG LQSNK + FD T+ R + A LS +
Sbjct: 71 DKVRHFQAAQPDTQLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIAQRLSEQRPAHLPP 130
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V +QVN E KSGI+ L + GLM IP + F
Sbjct: 131 LNVLLQVNISQEQSKSGILARDLSGLAASVAHLPNLRLRGLMAIPAPETDHARQLAVFRQ 190
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++E+ + K L LSMGMT D AI +G+T VRIG+ IFG R +
Sbjct: 191 MTELFLQLKADYGTLDTLSMGMTDDMAAAIEAGSTLVRIGTAIFGARDYSS 241
>gi|302671116|ref|YP_003831076.1| alanine racemase domain-containing protein [Butyrivibrio
proteoclasticus B316]
gi|302395589|gb|ADL34494.1| alanine racemase domain-containing protein [Butyrivibrio
proteoclasticus B316]
Length = 230
Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats.
Identities = 78/230 (33%), Positives = 120/230 (52%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L++ + I+++ A R + V+L+AVSK IR A++CG +F ENK+QE +
Sbjct: 2 IKENLEMVEANIQSACKRAGRDRSEVTLIAVSKTKPVSDIREAMACGIKVFGENKVQEIR 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + + IG LQ+NKV + + +I +V K A + + K + V
Sbjct: 62 DKTAEITE--PLSWHMIGHLQANKVKYLPGVACMIHSVDNVKLADEIEKQAAKHDIVMDV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
++VN +E K GI P++ DFV +N+ GLM I P NP+ +F L E
Sbjct: 120 LVEVNMAHEDTKFGISPDEAADFVKEISVNKHINIRGLMTIAPYTENPESNRVYFKGLRE 179
Query: 180 IAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + LSMGMT D+E+AI GAT VR+G+GIFGER
Sbjct: 180 LKDKINAMNISGVHMDTLSMGMTGDYEVAIEEGATFVRVGTGIFGERNYS 229
>gi|229847062|ref|ZP_04467168.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
7P49H1]
gi|229810146|gb|EEP45866.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
7P49H1]
Length = 233
Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats.
Identities = 79/232 (34%), Positives = 112/232 (48%), Gaps = 11/232 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + AKR +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIEMACEEAKRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYL 176
L V IQ+N E KSGI P + L + GLM IP + F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLILAKHIENLPHLCLRGLMAIPAPTDKIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+S++ + K + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKYGSTMVRIGTAIFGARNYS 232
>gi|149928122|ref|ZP_01916369.1| hypothetical protein LMED105_15274 [Limnobacter sp. MED105]
gi|149823208|gb|EDM82445.1| hypothetical protein LMED105_15274 [Limnobacter sp. MED105]
Length = 237
Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats.
Identities = 82/236 (34%), Positives = 111/236 (47%), Gaps = 15/236 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS +L + +IEN+ A RP +V L+AVSK I +CGQ F EN LQE
Sbjct: 1 MSRATQLADIQSRIENACSKAGRPGSAVKLLAVSKTFPLSDILEFYNCGQTAFGENYLQE 60
Query: 61 AKKKWIPLRKEWD-------VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
A K L + ++ FIG +QSNK I F + +V R K A LS +
Sbjct: 61 ALDKITQLADHPNAQTINTNLEWHFIGPIQSNKTKPIAENFSWVHSVDRLKIAQRLSDQR 120
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--- 170
+ L V +Q+NT E KSG+ QT D + + + + GLM IP N
Sbjct: 121 PDKLGPLNVLVQINTSGEDSKSGVNAEQTADLCLQIQSLKNIALRGLMTIPSNTDNVDQL 180
Query: 171 KPHFYLLSEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
K F I ++ LSMGM+ D ELAI G++ VR+GS +FG R
Sbjct: 181 KAEFLKCKLIFDSLNSKGLRMDTLSMGMSADLELAIECGSSCVRVGSALFGARNYS 236
>gi|242238227|ref|YP_002986408.1| alanine racemase domain protein [Dickeya dadantii Ech703]
gi|242130284|gb|ACS84586.1| alanine racemase domain protein [Dickeya dadantii Ech703]
Length = 241
Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 111/230 (48%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ +QKI +A R + ++L+AVSK I A++ GQ F EN +QE
Sbjct: 5 TVPQNLQDVRQKISAAAERCGRAPEEITLLAVSKTKPVTAIEDAIAAGQRAFGENYVQEG 64
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K + R+ ++ FIG LQSNK + FD T+ R + A LS +
Sbjct: 65 VEKILYFRQTHQDIALEWHFIGPLQSNKSRPVAEHFDWCHTIDRLRIAQRLSEQRPDTLP 124
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V +Q+N E KSGI+P++ L + GLM IP + + F
Sbjct: 125 PLNVLLQINISREESKSGILPDELPALAASVAALPNLRLRGLMAIPAPEADHQRQLAVFR 184
Query: 176 LLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ ++ ++ + LSMGMT D AI +G+T VRIG+ IFG R
Sbjct: 185 RMYDLFQQLQADHAHVDTLSMGMTDDMAAAIEAGSTLVRIGTAIFGARDY 234
>gi|300980103|ref|ZP_07174846.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 45-1]
gi|300409360|gb|EFJ92898.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 45-1]
Length = 234
Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIHHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|170719558|ref|YP_001747246.1| alanine racemase domain-containing protein [Pseudomonas putida
W619]
gi|169757561|gb|ACA70877.1| alanine racemase domain protein [Pseudomonas putida W619]
Length = 228
Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats.
Identities = 78/224 (34%), Positives = 104/224 (46%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L +I+++A A R S+ L+AVSK + IR + G EN LQEA
Sbjct: 3 TIADNLCALAARIDSAAKAAGRDPASLHLLAVSKTKPASAIRELHAAGVCDVGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K LR + FIG +QSNK I FD + +V R K A LS + K L
Sbjct: 63 LAKQDDLRDLPLI-WHFIGPIQSNKTKAIAEHFDWVHSVDRLKIAQRLSEQRPKDLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
+ +QVN E KSG P L + GLM IP + + F L
Sbjct: 122 ICLQVNVSGEESKSGCAPEDLPALANAVAVLPNLRLRGLMAIPEPSEDRAEQEAAFASLR 181
Query: 179 EIAR--ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 QLQEGLNLGLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARSY 225
>gi|324115034|gb|EGC08999.1| YggS family protein pyridoxal phosphate enzyme [Escherichia
fergusonii B253]
Length = 234
Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 108/230 (46%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELSP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + D + L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDDLAAAVAELPHLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|269137633|ref|YP_003294333.1| hypothetical protein ETAE_0275 [Edwardsiella tarda EIB202]
gi|267983293|gb|ACY83122.1| hypothetical protein ETAE_0275 [Edwardsiella tarda EIB202]
gi|304557698|gb|ADM40362.1| hypothetical protein ETAF_0238 [Edwardsiella tarda FL6-60]
Length = 236
Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats.
Identities = 80/232 (34%), Positives = 112/232 (48%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L +Q + +A R ++L+AVSK + I A++ GQ F EN +QE
Sbjct: 4 TIKHNLDAVRQHLVRAAEQCGRDPRDITLLAVSKTKPIEDIDAAIAAGQRAFGENYVQEG 63
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K R++ ++ FIG LQSNK + FD I TV R K A L+ + +
Sbjct: 64 VSKIQHYRQQPQGDALEWHFIGPLQSNKSRPVAEHFDWIHTVDRVKIAQRLNEQRPAELE 123
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVN E KSGI Q Q +L + GLM IP +P + +
Sbjct: 124 PLNVLIQVNISDEQSKSGITLEQIDALADAISQLPRLRLRGLMAIPAPEDDPARQLAVCT 183
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+A R +L LS+GMT D E AI +G+T VRIG+ IFG R T
Sbjct: 184 RMAQALSALQRRYPQLDTLSLGMTHDMEAAITAGSTLVRIGTAIFGARDYGT 235
>gi|118581657|ref|YP_902907.1| alanine racemase domain-containing protein [Pelobacter propionicus
DSM 2379]
gi|118504367|gb|ABL00850.1| alanine racemase domain protein [Pelobacter propionicus DSM 2379]
Length = 228
Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats.
Identities = 84/229 (36%), Positives = 120/229 (52%), Gaps = 13/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +L +++I +A+ A R + V LVAVSK + + A GQ+IF EN +QE
Sbjct: 1 MSIAERLAEVREEIRTAALAAGRDPEGVRLVAVSKTRPAADVIDAFRAGQIIFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K ++K V+ FIG LQSNKV +I L +I +V R A +S + + S
Sbjct: 61 LRAKAPEVKK--SVEWHFIGHLQSNKVRQIAGLVSMIHSVDRLSLAEEISRQWGRLSLSC 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+ +QVN EI KSG V L + GLM +PP +P +P F L
Sbjct: 119 DILVQVNISGEITKSGTTAENALQLVRDIAVLPNLRIRGLMTMPPFFDDPEAARPFFAGL 178
Query: 178 SEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A ++ +LSMGM+ DFE AI GAT VR+G+ IFGER
Sbjct: 179 RQLAELIDSEDIPGVEMKELSMGMSGDFEAAIGEGATLVRVGTAIFGER 227
>gi|323966468|gb|EGB61901.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
M863]
gi|327251719|gb|EGE63405.1| hypothetical protein ECSTEC7V_3570 [Escherichia coli STEC_7v]
Length = 234
Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVSELPRLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|307310428|ref|ZP_07590076.1| alanine racemase domain protein [Escherichia coli W]
gi|306909323|gb|EFN39818.1| alanine racemase domain protein [Escherichia coli W]
gi|315062257|gb|ADT76584.1| hypothetical protein ECW_m3209 [Escherichia coli W]
gi|323377159|gb|ADX49427.1| alanine racemase domain protein [Escherichia coli KO11]
Length = 234
Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L ++KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVREKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|15889996|ref|NP_355677.1| hypothetical protein Atu2747 [Agrobacterium tumefaciens str. C58]
gi|15157965|gb|AAK88462.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 220
Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats.
Identities = 112/219 (51%), Positives = 150/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +L+ +Q+I + A + R V+LVAVSK D++ I+ + GQ +F EN++QE
Sbjct: 2 MEIEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQE 61
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW L+ K D++L IG LQSNK ++ V+LFDV+E++ REK A LS E +Q R
Sbjct: 62 AQGKWPALKEKTSDIELHLIGPLQSNKAADAVALFDVVESIDREKIARALSEECARQGRS 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L Y+QVNTG E QK+GI P +T FV CR + +L VEGLMCIPPA NP PHF LL++
Sbjct: 122 LRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLPVEGLMCIPPAEENPGPHFALLAK 181
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C L KLSMGM+ DFE A+ GATSVR+GS IFG R
Sbjct: 182 LAGQCGLEKLSMGMSGDFETAVEFGATSVRVGSAIFGSR 220
>gi|22127203|ref|NP_670626.1| hypothetical protein y3327 [Yersinia pestis KIM 10]
gi|45443239|ref|NP_994778.1| hypothetical protein YP_3501 [Yersinia pestis biovar Microtus str.
91001]
gi|162421828|ref|YP_001604768.1| hypothetical protein YpAngola_A0138 [Yersinia pestis Angola]
gi|165924910|ref|ZP_02220742.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937218|ref|ZP_02225782.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010377|ref|ZP_02231275.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166212690|ref|ZP_02238725.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167399806|ref|ZP_02305324.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167421909|ref|ZP_02313662.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167426713|ref|ZP_02318466.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|270487539|ref|ZP_06204613.1| pyridoxal phosphate enzyme, YggS family [Yersinia pestis KIM D27]
gi|21960269|gb|AAM86877.1|AE013933_14 hypothetical protein y3327 [Yersinia pestis KIM 10]
gi|45438107|gb|AAS63655.1| Predicted enzyme with a TIM-barrel fold [Yersinia pestis biovar
Microtus str. 91001]
gi|162354643|gb|ABX88591.1| conserved hypothetical protein TIGR00044 [Yersinia pestis Angola]
gi|165914692|gb|EDR33305.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923110|gb|EDR40261.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990863|gb|EDR43164.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166205982|gb|EDR50462.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166960046|gb|EDR56067.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167050514|gb|EDR61922.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167054316|gb|EDR64135.1| conserved hypothetical protein TIGR00044 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|270336043|gb|EFA46820.1| pyridoxal phosphate enzyme, YggS family [Yersinia pestis KIM D27]
Length = 242
Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats.
Identities = 73/225 (32%), Positives = 106/225 (47%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + +I +A R + V+L+AVSK I A++ GQ F EN +QE
Sbjct: 13 TIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQEG 72
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K ++ FIG LQSNK + F TV R K A LS + L
Sbjct: 73 VDKIHSFVDNKTLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPALN 132
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
V IQ+N E K+GI ++ L + GLM IP + + + +++
Sbjct: 133 VLIQINISDEQSKAGISLSELPALADSISTLPNLCLRGLMAIPAPEHDYQRQLAVFTQMN 192
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
AR ++ LSMGMT D + AI++G+T VRIG+ IFG R
Sbjct: 193 QAFLTLKARYPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGAR 237
>gi|330961171|gb|EGH61431.1| hypothetical protein PMA4326_21764 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 228
Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats.
Identities = 78/224 (34%), Positives = 107/224 (47%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A R S+ L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAADRDPASIGLLAVSKTKPASDLREAYTAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + FIG +QSNK I F + +V R K A LS + + L
Sbjct: 63 LAKQAELSDLP-LCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEGLEPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
+ IQVN E KSG P D +L + GLM IP +P F +
Sbjct: 122 ICIQVNVSGEASKSGCTPQDLSDLATAISALPRLKLRGLMAIPEPTDDPLEQTASFAAVR 181
Query: 179 EIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 TLQAQLGLPLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|227544397|ref|ZP_03974446.1| TIM-barrel fold protein [Lactobacillus reuteri CF48-3A]
gi|300909742|ref|ZP_07127203.1| YggS family pyridoxal phosphate enzyme [Lactobacillus reuteri
SD2112]
gi|227185660|gb|EEI65731.1| TIM-barrel fold protein [Lactobacillus reuteri CF48-3A]
gi|300893607|gb|EFK86966.1| YggS family pyridoxal phosphate enzyme [Lactobacillus reuteri
SD2112]
Length = 235
Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats.
Identities = 75/234 (32%), Positives = 108/234 (46%), Gaps = 14/234 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ +K + ++KI + + R V L+ VSK + I G F EN +QE
Sbjct: 1 MTIVDKAKDVQEKIIAACKRSGRDPQDVQLLPVSKNHPAADIAELYKAGWNSFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK L D+ IG LQ NKV I +I++V K + E K +R +
Sbjct: 61 LDKKHDELPA--DINWYMIGHLQRNKVKYIADYVTMIQSVDSLKLMKTIEKEGRKHNRII 118
Query: 121 PVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
P+ I+VN G E K G+ P + Q + + GLM P +P +P F
Sbjct: 119 PILIEVNVGEEESKFGVKPTLQDCMELAEASLQLPHVKLRGLMTSAPYYDDPEKTRPIFR 178
Query: 176 LLSEIARE-------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L E+ E KL LSMGMT D+E+A+ G+T VR+G+ IFG R
Sbjct: 179 RLHELRDEMNNQNDQLKLDVLSMGMTHDYEIAVEEGSTCVRVGTAIFGPRDYSN 232
>gi|15803490|ref|NP_289523.1| hypothetical protein Z4296 [Escherichia coli O157:H7 EDL933]
gi|15833081|ref|NP_311854.1| hypothetical protein ECs3826 [Escherichia coli O157:H7 str. Sakai]
gi|16130852|ref|NP_417426.1| predicted enzyme, binds pyridoxal 5'-phosphate [Escherichia coli
str. K-12 substr. MG1655]
gi|26249372|ref|NP_755412.1| hypothetical protein c3537 [Escherichia coli CFT073]
gi|74313507|ref|YP_311927.1| hypothetical protein SSON_3104 [Shigella sonnei Ss046]
gi|82545427|ref|YP_409373.1| hypothetical protein SBO_3040 [Shigella boydii Sb227]
gi|82778278|ref|YP_404626.1| hypothetical protein SDY_3122 [Shigella dysenteriae Sd197]
gi|89109728|ref|AP_003508.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110]
gi|110806859|ref|YP_690379.1| hypothetical protein SFV_3005 [Shigella flexneri 5 str. 8401]
gi|157155954|ref|YP_001464304.1| alanine racemase [Escherichia coli E24377A]
gi|157162412|ref|YP_001459730.1| alanine racemase [Escherichia coli HS]
gi|168747557|ref|ZP_02772579.1| alanine racemase family [Escherichia coli O157:H7 str. EC4113]
gi|168753903|ref|ZP_02778910.1| alanine racemase family [Escherichia coli O157:H7 str. EC4401]
gi|168760093|ref|ZP_02785100.1| alanine racemase family [Escherichia coli O157:H7 str. EC4501]
gi|168766958|ref|ZP_02791965.1| alanine racemase family [Escherichia coli O157:H7 str. EC4486]
gi|168773410|ref|ZP_02798417.1| alanine racemase family [Escherichia coli O157:H7 str. EC4196]
gi|168781810|ref|ZP_02806817.1| alanine racemase family [Escherichia coli O157:H7 str. EC4076]
gi|168785809|ref|ZP_02810816.1| alanine racemase family [Escherichia coli O157:H7 str. EC869]
gi|168797526|ref|ZP_02822533.1| alanine racemase family [Escherichia coli O157:H7 str. EC508]
gi|170018808|ref|YP_001723762.1| alanine racemase domain-containing protein [Escherichia coli ATCC
8739]
gi|170082503|ref|YP_001731823.1| hypothetical protein ECDH10B_3126 [Escherichia coli str. K-12
substr. DH10B]
gi|170683383|ref|YP_001745112.1| alanine racemase [Escherichia coli SMS-3-5]
gi|187731481|ref|YP_001881724.1| pyridoxal phosphate enzyme, YggS family [Shigella boydii CDC
3083-94]
gi|191167925|ref|ZP_03029728.1| alanine racemase family [Escherichia coli B7A]
gi|193063475|ref|ZP_03044564.1| alanine racemase family [Escherichia coli E22]
gi|193067463|ref|ZP_03048431.1| alanine racemase family [Escherichia coli E110019]
gi|194426432|ref|ZP_03058987.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli B171]
gi|194431672|ref|ZP_03063963.1| pyridoxal phosphate enzyme, YggS family [Shigella dysenteriae 1012]
gi|195937089|ref|ZP_03082471.1| hypothetical protein EscherichcoliO157_11651 [Escherichia coli
O157:H7 str. EC4024]
gi|208806214|ref|ZP_03248551.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4206]
gi|208811836|ref|ZP_03253165.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4045]
gi|208820717|ref|ZP_03261037.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4042]
gi|209395868|ref|YP_002272431.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4115]
gi|209920410|ref|YP_002294494.1| hypothetical protein ECSE_3219 [Escherichia coli SE11]
gi|215488249|ref|YP_002330680.1| predicted enzyme [Escherichia coli O127:H6 str. E2348/69]
gi|217327080|ref|ZP_03443163.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. TW14588]
gi|218555510|ref|YP_002388423.1| hypothetical protein ECIAI1_3084 [Escherichia coli IAI1]
gi|218696549|ref|YP_002404216.1| putative enzyme [Escherichia coli 55989]
gi|218701661|ref|YP_002409290.1| hypothetical protein ECIAI39_3369 [Escherichia coli IAI39]
gi|238902073|ref|YP_002927869.1| putative enzyme [Escherichia coli BW2952]
gi|253772211|ref|YP_003035042.1| alanine racemase domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254038000|ref|ZP_04872058.1| pyridoxal phosphate enzyme [Escherichia sp. 1_1_43]
gi|254162861|ref|YP_003045969.1| hypothetical protein ECB_02781 [Escherichia coli B str. REL606]
gi|254794903|ref|YP_003079740.1| hypothetical protein ECSP_3922 [Escherichia coli O157:H7 str.
TW14359]
gi|256019247|ref|ZP_05433112.1| predicted enzyme [Shigella sp. D9]
gi|256024540|ref|ZP_05438405.1| predicted enzyme [Escherichia sp. 4_1_40B]
gi|260845621|ref|YP_003223399.1| putative enzyme [Escherichia coli O103:H2 str. 12009]
gi|260857084|ref|YP_003230975.1| putative enzyme [Escherichia coli O26:H11 str. 11368]
gi|260869638|ref|YP_003236040.1| putative enzyme [Escherichia coli O111:H- str. 11128]
gi|261226263|ref|ZP_05940544.1| predicted enzyme [Escherichia coli O157:H7 str. FRIK2000]
gi|261256479|ref|ZP_05949012.1| putative enzyme [Escherichia coli O157:H7 str. FRIK966]
gi|291284272|ref|YP_003501090.1| hypothetical protein G2583_3610 [Escherichia coli O55:H7 str.
CB9615]
gi|293412311|ref|ZP_06655034.1| YggS family pyridoxal phosphate enzyme [Escherichia coli B354]
gi|293416211|ref|ZP_06658851.1| YggS family pyridoxal phosphate enzyme [Escherichia coli B185]
gi|297517998|ref|ZP_06936384.1| hypothetical protein EcolOP_10202 [Escherichia coli OP50]
gi|300815579|ref|ZP_07095803.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 107-1]
gi|300824814|ref|ZP_07104918.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 119-7]
gi|300906485|ref|ZP_07124180.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 84-1]
gi|300921293|ref|ZP_07137662.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 115-1]
gi|300925053|ref|ZP_07140971.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 182-1]
gi|300928106|ref|ZP_07143651.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 187-1]
gi|300940767|ref|ZP_07155313.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 21-1]
gi|300947682|ref|ZP_07161851.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 116-1]
gi|300954202|ref|ZP_07166667.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 175-1]
gi|301027298|ref|ZP_07190644.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 69-1]
gi|301027724|ref|ZP_07191034.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 196-1]
gi|301049254|ref|ZP_07196227.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 185-1]
gi|301328105|ref|ZP_07221246.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 78-1]
gi|301643695|ref|ZP_07243734.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 146-1]
gi|307139636|ref|ZP_07498992.1| hypothetical protein EcolH7_16113 [Escherichia coli H736]
gi|309785221|ref|ZP_07679852.1| pyridoxal phosphate enzyme, YggS family [Shigella dysenteriae 1617]
gi|309794040|ref|ZP_07688465.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 145-7]
gi|312964786|ref|ZP_07779026.1| UPF0001 protein [Escherichia coli 2362-75]
gi|312972807|ref|ZP_07786980.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|331643644|ref|ZP_08344775.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli H736]
gi|331648706|ref|ZP_08349794.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli M605]
gi|331669697|ref|ZP_08370543.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli TA271]
gi|331678945|ref|ZP_08379619.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli H591]
gi|331684578|ref|ZP_08385170.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli H299]
gi|332280356|ref|ZP_08392769.1| conserved hypothetical protein [Shigella sp. D9]
gi|54040264|sp|P67081|YGGS_ECOL6 RecName: Full=UPF0001 protein yggS
gi|54040265|sp|P67082|YGGS_ECO57 RecName: Full=UPF0001 protein yggS
gi|54042612|sp|P67080|YGGS_ECOLI RecName: Full=UPF0001 protein yggS
gi|112489681|pdb|1W8G|A Chain A, Crystal Structure Of E. Coli K-12 Yggs
gi|12517497|gb|AAG58082.1|AE005525_8 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|26109780|gb|AAN81985.1|AE016766_73 Hypothetical protein yggS [Escherichia coli CFT073]
gi|882480|gb|AAA69118.1| ORF_o234 [Escherichia coli str. K-12 substr. MG1655]
gi|1789321|gb|AAC75988.1| predicted enzyme, binds pyridoxal 5'-phosphate [Escherichia coli
str. K-12 substr. MG1655]
gi|13363299|dbj|BAB37250.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|73856984|gb|AAZ89691.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81242426|gb|ABB63136.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|81246838|gb|ABB67546.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|85675761|dbj|BAE77014.1| hypothetical protein [Escherichia coli str. K12 substr. W3110]
gi|110616407|gb|ABF05074.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|157068092|gb|ABV07347.1| alanine racemase family [Escherichia coli HS]
gi|157077984|gb|ABV17692.1| alanine racemase family [Escherichia coli E24377A]
gi|169753736|gb|ACA76435.1| alanine racemase domain protein [Escherichia coli ATCC 8739]
gi|169890338|gb|ACB04045.1| predicted enzyme [Escherichia coli str. K-12 substr. DH10B]
gi|170521101|gb|ACB19279.1| alanine racemase family [Escherichia coli SMS-3-5]
gi|187428473|gb|ACD07747.1| pyridoxal phosphate enzyme, YggS family [Shigella boydii CDC
3083-94]
gi|187770778|gb|EDU34622.1| alanine racemase family [Escherichia coli O157:H7 str. EC4196]
gi|188017916|gb|EDU56038.1| alanine racemase family [Escherichia coli O157:H7 str. EC4113]
gi|189000521|gb|EDU69507.1| alanine racemase family [Escherichia coli O157:H7 str. EC4076]
gi|189358401|gb|EDU76820.1| alanine racemase family [Escherichia coli O157:H7 str. EC4401]
gi|189363749|gb|EDU82168.1| alanine racemase family [Escherichia coli O157:H7 str. EC4486]
gi|189369217|gb|EDU87633.1| alanine racemase family [Escherichia coli O157:H7 str. EC4501]
gi|189374066|gb|EDU92482.1| alanine racemase family [Escherichia coli O157:H7 str. EC869]
gi|189379642|gb|EDU98058.1| alanine racemase family [Escherichia coli O157:H7 str. EC508]
gi|190902010|gb|EDV61756.1| alanine racemase family [Escherichia coli B7A]
gi|192930752|gb|EDV83357.1| alanine racemase family [Escherichia coli E22]
gi|192959420|gb|EDV89855.1| alanine racemase family [Escherichia coli E110019]
gi|194415740|gb|EDX32007.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli B171]
gi|194420028|gb|EDX36106.1| pyridoxal phosphate enzyme, YggS family [Shigella dysenteriae 1012]
gi|195183144|dbj|BAG66689.1| predicted protein [Escherichia coli O111:H-]
gi|208726015|gb|EDZ75616.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4206]
gi|208733113|gb|EDZ81800.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4045]
gi|208740840|gb|EDZ88522.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4042]
gi|209157268|gb|ACI34701.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. EC4115]
gi|209760058|gb|ACI78341.1| hypothetical protein ECs3826 [Escherichia coli]
gi|209760060|gb|ACI78342.1| hypothetical protein ECs3826 [Escherichia coli]
gi|209760062|gb|ACI78343.1| hypothetical protein ECs3826 [Escherichia coli]
gi|209760064|gb|ACI78344.1| hypothetical protein ECs3826 [Escherichia coli]
gi|209760066|gb|ACI78345.1| hypothetical protein ECs3826 [Escherichia coli]
gi|209913669|dbj|BAG78743.1| conserved hypothetical protein [Escherichia coli SE11]
gi|215266321|emb|CAS10752.1| predicted enzyme [Escherichia coli O127:H6 str. E2348/69]
gi|217319447|gb|EEC27872.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. TW14588]
gi|218353281|emb|CAU99241.1| putative enzyme [Escherichia coli 55989]
gi|218362278|emb|CAQ99899.1| putative enzyme [Escherichia coli IAI1]
gi|218371647|emb|CAR19486.1| putative enzyme [Escherichia coli IAI39]
gi|226839624|gb|EEH71645.1| pyridoxal phosphate enzyme [Escherichia sp. 1_1_43]
gi|238862357|gb|ACR64355.1| predicted enzyme [Escherichia coli BW2952]
gi|242378477|emb|CAQ33261.1| predicted enzyme [Escherichia coli BL21(DE3)]
gi|253323255|gb|ACT27857.1| alanine racemase domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974762|gb|ACT40433.1| predicted enzyme [Escherichia coli B str. REL606]
gi|253978928|gb|ACT44598.1| predicted enzyme [Escherichia coli BL21(DE3)]
gi|254594303|gb|ACT73664.1| predicted enzyme [Escherichia coli O157:H7 str. TW14359]
gi|257755733|dbj|BAI27235.1| predicted enzyme [Escherichia coli O26:H11 str. 11368]
gi|257760768|dbj|BAI32265.1| predicted enzyme [Escherichia coli O103:H2 str. 12009]
gi|257765994|dbj|BAI37489.1| predicted enzyme [Escherichia coli O111:H- str. 11128]
gi|260448006|gb|ACX38428.1| alanine racemase domain protein [Escherichia coli DH1]
gi|290764144|gb|ADD58105.1| UPF0001 protein yggS [Escherichia coli O55:H7 str. CB9615]
gi|291432400|gb|EFF05382.1| YggS family pyridoxal phosphate enzyme [Escherichia coli B185]
gi|291469082|gb|EFF11573.1| YggS family pyridoxal phosphate enzyme [Escherichia coli B354]
gi|299879160|gb|EFI87371.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 196-1]
gi|300298950|gb|EFJ55335.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 185-1]
gi|300318786|gb|EFJ68570.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 175-1]
gi|300395104|gb|EFJ78642.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 69-1]
gi|300401728|gb|EFJ85266.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 84-1]
gi|300411755|gb|EFJ95065.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 115-1]
gi|300418799|gb|EFK02110.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 182-1]
gi|300452728|gb|EFK16348.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 116-1]
gi|300454467|gb|EFK17960.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 21-1]
gi|300463872|gb|EFK27365.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 187-1]
gi|300522721|gb|EFK43790.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 119-7]
gi|300531508|gb|EFK52570.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 107-1]
gi|300845409|gb|EFK73169.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 78-1]
gi|301077897|gb|EFK92703.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 146-1]
gi|308122447|gb|EFO59709.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 145-7]
gi|308926341|gb|EFP71817.1| pyridoxal phosphate enzyme, YggS family [Shigella dysenteriae 1617]
gi|310332749|gb|EFP99962.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|312290342|gb|EFR18222.1| UPF0001 protein [Escherichia coli 2362-75]
gi|315137548|dbj|BAJ44707.1| hypothetical protein ECDH1ME8569_2851 [Escherichia coli DH1]
gi|315256843|gb|EFU36811.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 85-1]
gi|315614887|gb|EFU95525.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli 3431]
gi|320174053|gb|EFW49223.1| hypothetical protein SDB_03450 [Shigella dysenteriae CDC 74-1112]
gi|320181044|gb|EFW55965.1| hypothetical protein SGB_01868 [Shigella boydii ATCC 9905]
gi|320184298|gb|EFW59110.1| hypothetical protein SGF_03462 [Shigella flexneri CDC 796-83]
gi|320189300|gb|EFW63959.1| hypothetical protein ECoD_04304 [Escherichia coli O157:H7 str.
EC1212]
gi|320195070|gb|EFW69699.1| hypothetical protein EcoM_02833 [Escherichia coli WV_060327]
gi|320202615|gb|EFW77185.1| hypothetical protein ECoL_00278 [Escherichia coli EC4100B]
gi|320640597|gb|EFX10136.1| hypothetical protein ECO5101_04254 [Escherichia coli O157:H7 str.
G5101]
gi|320645844|gb|EFX14829.1| hypothetical protein ECO9389_23741 [Escherichia coli O157:H- str.
493-89]
gi|320651144|gb|EFX19584.1| hypothetical protein ECO2687_11728 [Escherichia coli O157:H- str. H
2687]
gi|320656640|gb|EFX24536.1| hypothetical protein ECO7815_01885 [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320662159|gb|EFX29560.1| hypothetical protein ECO5905_09823 [Escherichia coli O55:H7 str.
USDA 5905]
gi|320667234|gb|EFX34197.1| hypothetical protein ECOSU61_08909 [Escherichia coli O157:H7 str.
LSU-61]
gi|323154660|gb|EFZ40859.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli EPECa14]
gi|323162603|gb|EFZ48450.1| hypothetical protein ECE128010_1207 [Escherichia coli E128010]
gi|323167997|gb|EFZ53686.1| hypothetical protein SS53G_1713 [Shigella sonnei 53G]
gi|323173835|gb|EFZ59464.1| hypothetical protein ECLT68_2154 [Escherichia coli LT-68]
gi|323180411|gb|EFZ65963.1| hypothetical protein ECOK1180_1093 [Escherichia coli 1180]
gi|323183522|gb|EFZ68919.1| hypothetical protein ECOK1357_3301 [Escherichia coli 1357]
gi|323188655|gb|EFZ73940.1| hypothetical protein ECRN5871_3075 [Escherichia coli RN587/1]
gi|323936046|gb|EGB32341.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
E1520]
gi|323941963|gb|EGB38142.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
E482]
gi|323946551|gb|EGB42574.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
H120]
gi|323971762|gb|EGB66989.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
TA007]
gi|324005507|gb|EGB74726.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 57-2]
gi|324017224|gb|EGB86443.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 117-3]
gi|324119746|gb|EGC13626.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
E1167]
gi|325498508|gb|EGC96367.1| hypothetical protein ECD227_2605 [Escherichia fergusonii ECD227]
gi|326338961|gb|EGD62776.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli O157:H7
str. 1044]
gi|326343157|gb|EGD66925.1| hypothetical protein ECF_02670 [Escherichia coli O157:H7 str. 1125]
gi|330908986|gb|EGH37500.1| hypothetical protein YggS [Escherichia coli AA86]
gi|331037115|gb|EGI09339.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli H736]
gi|331042453|gb|EGI14595.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli M605]
gi|331063365|gb|EGI35278.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli TA271]
gi|331073775|gb|EGI45096.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli H591]
gi|331078193|gb|EGI49399.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli H299]
gi|332087670|gb|EGI92797.1| hypothetical protein SD15574_3395 [Shigella dysenteriae 155-74]
gi|332091365|gb|EGI96453.1| hypothetical protein SB359474_3533 [Shigella boydii 3594-74]
gi|332102708|gb|EGJ06054.1| conserved hypothetical protein [Shigella sp. D9]
gi|332344851|gb|AEE58185.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|332999698|gb|EGK19283.1| hypothetical protein SFVA6_3845 [Shigella flexneri VA-6]
Length = 234
Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|227888506|ref|ZP_04006311.1| alanine racemase family protein [Escherichia coli 83972]
gi|222034646|emb|CAP77388.1| UPF0001 protein yggS [Escherichia coli LF82]
gi|227834775|gb|EEJ45241.1| alanine racemase family protein [Escherichia coli 83972]
gi|281179960|dbj|BAI56290.1| conserved hypothetical protein [Escherichia coli SE15]
gi|307554933|gb|ADN47708.1| alanine racemase family protein [Escherichia coli ABU 83972]
Length = 234
Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRYFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|127512070|ref|YP_001093267.1| alanine racemase domain-containing protein [Shewanella loihica
PV-4]
gi|126637365|gb|ABO23008.1| alanine racemase domain protein [Shewanella loihica PV-4]
Length = 233
Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats.
Identities = 84/228 (36%), Positives = 118/228 (51%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L Q+I +A + R + L+AVSK +I A GQ +F EN +QE
Sbjct: 3 TIADRLADAHQRIAQAAQNSSRDSREIQLLAVSKTKPIDQIVAAYDAGQRLFGENYVQEG 62
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K LR+ D++ FIG LQSNK I FD + T+SREK A LS + L
Sbjct: 63 EEKINALRESHGDIEWHFIGPLQSNKTKSIAEHFDWMHTLSREKIAKRLSEQRPSHLAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
V IQVN E KSG+ P++ + +L + GLM IP A + + F +
Sbjct: 123 QVCIQVNVSQEQSKSGVNPDEVAHLAEIIASLPRLTLRGLMAIPTATDDVALQQAEFSQM 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ K L LSMGM++D E AIA+G+T VRIGS IFG R
Sbjct: 183 QALFEALKQQHPSLDTLSMGMSQDLEQAIAAGSTMVRIGSAIFGARDY 230
>gi|91212333|ref|YP_542319.1| hypothetical protein UTI89_C3340 [Escherichia coli UTI89]
gi|110643100|ref|YP_670830.1| hypothetical protein ECP_2945 [Escherichia coli 536]
gi|117625178|ref|YP_854166.1| hypothetical protein APECO1_3570 [Escherichia coli APEC O1]
gi|191171913|ref|ZP_03033459.1| alanine racemase family [Escherichia coli F11]
gi|194436734|ref|ZP_03068834.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli 101-1]
gi|218559942|ref|YP_002392855.1| enzyme [Escherichia coli S88]
gi|237706397|ref|ZP_04536878.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|300995468|ref|ZP_07181116.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 200-1]
gi|331659086|ref|ZP_08360028.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli TA206]
gi|91073907|gb|ABE08788.1| hypothetical protein UTI89_C3340 [Escherichia coli UTI89]
gi|110344692|gb|ABG70929.1| hypothetical protein YggS [Escherichia coli 536]
gi|115514302|gb|ABJ02377.1| conserved hypothetical protein [Escherichia coli APEC O1]
gi|190907948|gb|EDV67541.1| alanine racemase family [Escherichia coli F11]
gi|194424216|gb|EDX40203.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli 101-1]
gi|218366711|emb|CAR04468.1| putative enzyme [Escherichia coli S88]
gi|226899437|gb|EEH85696.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|294490236|gb|ADE88992.1| alanine racemase family [Escherichia coli IHE3034]
gi|300304830|gb|EFJ59350.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 200-1]
gi|307625475|gb|ADN69779.1| putative enzyme [Escherichia coli UM146]
gi|315289501|gb|EFU48896.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 110-3]
gi|315295640|gb|EFU54963.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 16-3]
gi|323951611|gb|EGB47486.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
H252]
gi|323957325|gb|EGB53047.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
H263]
gi|323960756|gb|EGB56377.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
H489]
gi|324011798|gb|EGB81017.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 60-1]
gi|331053668|gb|EGI25697.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli TA206]
Length = 234
Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRHFQELSVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|332752994|gb|EGJ83378.1| hypothetical protein SF434370_3172 [Shigella flexneri 4343-70]
gi|332999870|gb|EGK19453.1| hypothetical protein SFK218_3954 [Shigella flexneri K-218]
Length = 234
Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNEQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|218691075|ref|YP_002399287.1| hypothetical protein ECED1_3414 [Escherichia coli ED1a]
gi|218428639|emb|CAR09568.2| putative enzyme [Escherichia coli ED1a]
Length = 234
Score = 292 bits (749), Expect = 2e-77, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRHFQELGITGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|237729881|ref|ZP_04560362.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226908487|gb|EEH94405.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 234
Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats.
Identities = 74/229 (32%), Positives = 112/229 (48%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I+ A++ GQ F EN +QE
Sbjct: 3 DIAHNLAHVRDKISAAATRCGRSSEEVTLLAVSKTKPASAIKEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K +++ D+Q FIG LQSNK + FD T+ R + A+ LS + +
Sbjct: 63 VDKIRYFQEKGVNDLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIAARLSEQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + ++ + GLM IP + F + +
Sbjct: 123 LNVLIQINISDENSKSGISLAELDALAAEVAALPRITLRGLMAIPAPESDYVRQFEVAQQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A R + LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPGIDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGARDY 231
>gi|148544413|ref|YP_001271783.1| alanine racemase domain-containing protein [Lactobacillus reuteri
DSM 20016]
gi|227363162|ref|ZP_03847296.1| TIM-barrel fold protein [Lactobacillus reuteri MM2-3]
gi|325682733|ref|ZP_08162249.1| proline synthetase associated protein [Lactobacillus reuteri
MM4-1A]
gi|148531447|gb|ABQ83446.1| alanine racemase domain protein [Lactobacillus reuteri DSM 20016]
gi|227071768|gb|EEI10057.1| TIM-barrel fold protein [Lactobacillus reuteri MM2-3]
gi|324977083|gb|EGC14034.1| proline synthetase associated protein [Lactobacillus reuteri
MM4-1A]
Length = 235
Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats.
Identities = 75/234 (32%), Positives = 108/234 (46%), Gaps = 14/234 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ +K + ++KI + + R V L+ VSK + I G F EN +QE
Sbjct: 1 MTIVDKAKEVQEKIIAACKRSGRDPQDVQLLPVSKNHPAADIAELYKAGWNNFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK L D+ IG LQ NKV I +I++V K + + E K R +
Sbjct: 61 LAKKHDELPA--DINWYMIGHLQRNKVKYIADYVTMIQSVDSLKLMNTIEKEGRKHDRII 118
Query: 121 PVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
P+ I+VN G E K G+ P + Q + + GLM P +P +P F
Sbjct: 119 PILIEVNVGEEESKFGVKPTLQDCMELAEASLQLPHVKLRGLMTSAPYYDDPEKTRPIFR 178
Query: 176 LLSEIARE-------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L E+ E KL LSMGMT D+E+A+ G+T VR+G+ IFG R
Sbjct: 179 RLRELRDEMNNQNDQLKLDVLSMGMTHDYEIAVEEGSTCVRVGTAIFGPRDYSN 232
>gi|306812145|ref|ZP_07446343.1| hypothetical protein ECNC101_09539 [Escherichia coli NC101]
gi|305854183|gb|EFM54621.1| hypothetical protein ECNC101_09539 [Escherichia coli NC101]
Length = 234
Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIVEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|24374863|ref|NP_718906.1| hypothetical protein SO_3352 [Shewanella oneidensis MR-1]
gi|24349558|gb|AAN56350.1|AE015772_10 conserved hypothetical protein TIGR00044 [Shewanella oneidensis
MR-1]
Length = 237
Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats.
Identities = 85/230 (36%), Positives = 114/230 (49%), Gaps = 9/230 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L V + +I +A R S+ L+AVSK I A GQ F EN +QE
Sbjct: 3 TIADRLAVAQSRIAQAAQKCARLPHSIHLLAVSKTKPIADIIAAYDAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L+ D++ FIG LQSNK + + FD + T+SREK A L+ + L
Sbjct: 63 VTKIESLKTTHPDIEWHFIGPLQSNKTTLVAQHFDWMHTLSREKIALRLNEQRPANLAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQ+N E KSGI Q Q QL + GLM IP A + + LSE+
Sbjct: 123 NVCIQINISDEDTKSGINAQQMLPLANSISQLPQLRLRGLMAIPSATDDTEQQTRELSEL 182
Query: 181 --------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ LSMGM+ D +LAIA G+T VRIGS IFGER +
Sbjct: 183 KHLFDTLKQHYPDVDTLSMGMSNDLDLAIAYGSTMVRIGSAIFGERDYSS 232
>gi|51597523|ref|YP_071714.1| hypothetical protein YPTB3213 [Yersinia pseudotuberculosis IP
32953]
gi|186896646|ref|YP_001873758.1| alanine racemase domain-containing protein [Yersinia
pseudotuberculosis PB1/+]
gi|51590805|emb|CAH22451.1| Conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|186699672|gb|ACC90301.1| alanine racemase domain protein [Yersinia pseudotuberculosis PB1/+]
Length = 232
Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats.
Identities = 73/225 (32%), Positives = 106/225 (47%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + +I +A R + V+L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K ++ FIG LQSNK + F TV R K A LS + L
Sbjct: 63 VDKIHSFADNKTLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPALN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
V IQ+N E K+GI ++ L + GLM IP + + + +++
Sbjct: 123 VLIQINISDEQSKAGISLSELPALADSISTLPNLCLRGLMAIPAPEHDYQRQLAVFTQMN 182
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
AR ++ LSMGMT D + AI++G+T VRIG+ IFG R
Sbjct: 183 QAFLTLKARYPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGAR 227
>gi|333000453|gb|EGK20034.1| hypothetical protein SFK272_3774 [Shigella flexneri K-272]
gi|333015291|gb|EGK34633.1| hypothetical protein SFK227_3747 [Shigella flexneri K-227]
Length = 234
Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAVLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|170765703|ref|ZP_02900514.1| alanine racemase family [Escherichia albertii TW07627]
gi|170124849|gb|EDS93780.1| alanine racemase family [Escherichia albertii TW07627]
Length = 234
Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 110/230 (47%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A+ R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISTAAMRCGRSPEEITLLAVSKTKPASAIAEAIDAGQREFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ +Q FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRHFQELGVEGLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGPKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|226938967|ref|YP_002794038.1| hypothetical protein LHK_00033 [Laribacter hongkongensis HLHK9]
gi|226713891|gb|ACO73029.1| Ala_racemase_N domain containing protein [Laribacter hongkongensis
HLHK9]
Length = 233
Score = 292 bits (748), Expect = 3e-77, Method: Composition-based stats.
Identities = 78/226 (34%), Positives = 108/226 (47%), Gaps = 8/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+S+ + L +I + A RP SV L+AVSK ++ +R A +CGQ F EN +QE
Sbjct: 3 LSIQDALASVTSRIRAAETAAARPSGSVRLLAVSKTFPAEAVREAYACGQRAFGENYVQE 62
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L ++ FIG LQSNK + + +V R K A LS + L
Sbjct: 63 LAGKAAALADLPGLEWHFIGPLQSNKTRSVAETAHWVHSVERLKIAERLSAQRPDHLPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
V +QVN E KSG P + + +L + GLMCIP + F L
Sbjct: 123 QVCVQVNVSGEASKSGCTPAEAPALARAVARLPRLVLRGLMCIPDPAAPAEELARQFAGL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + L LSMGM+ D E AIA G+T VR+G+ IFG R
Sbjct: 183 QQMHARLEADGLMLDTLSMGMSADLESAIAHGSTCVRVGTAIFGAR 228
>gi|24114206|ref|NP_708716.1| hypothetical protein SF2941 [Shigella flexneri 2a str. 301]
gi|30064267|ref|NP_838438.1| hypothetical protein S3145 [Shigella flexneri 2a str. 2457T]
gi|24053353|gb|AAN44423.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30042524|gb|AAP18248.1| hypothetical protein S3145 [Shigella flexneri 2a str. 2457T]
gi|281602287|gb|ADA75271.1| putative enzyme with a TIM-barrel fold [Shigella flexneri 2002017]
gi|313648001|gb|EFS12447.1| pyridoxal phosphate enzyme, YggS family [Shigella flexneri 2a str.
2457T]
gi|332753795|gb|EGJ84174.1| hypothetical protein SFK671_3525 [Shigella flexneri K-671]
gi|332754247|gb|EGJ84613.1| hypothetical protein SF274771_3537 [Shigella flexneri 2747-71]
gi|332765368|gb|EGJ95586.1| alanine racemase, N-terminal domain protein [Shigella flexneri
2930-71]
gi|333015075|gb|EGK34418.1| hypothetical protein SFK304_3756 [Shigella flexneri K-304]
Length = 234
Score = 291 bits (747), Expect = 3e-77, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNEQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPALESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|210612737|ref|ZP_03289452.1| hypothetical protein CLONEX_01654 [Clostridium nexile DSM 1787]
gi|210151430|gb|EEA82438.1| hypothetical protein CLONEX_01654 [Clostridium nexile DSM 1787]
Length = 231
Score = 291 bits (747), Expect = 3e-77, Method: Composition-based stats.
Identities = 77/231 (33%), Positives = 118/231 (51%), Gaps = 13/231 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L LQ ++KI ++ AKR + V+L+AVSK ++ + G F ENK+QE
Sbjct: 2 LSENLQQVEEKIADACKRAKRERSEVTLIAVSKTKPISMLQEIYNEGIRCFGENKVQELT 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ L D++ IG LQ NKV IV ++I +V + A ++ E K+ +
Sbjct: 62 EKYEQLPS--DIKWHMIGHLQRNKVKYIVDKTELIHSVDSLRLAETINQEAAKKDVVSNI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
I+VN E K G+ + + + ++GLM I P + NP +P F L +
Sbjct: 120 LIEVNVAEEESKFGVKVEEVLPLIEKIALFPNIQIKGLMTIAPYVKNPEENRPIFRRLRK 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ ++ LSMGMT D+E+AI GAT VR+G+GIFGER T
Sbjct: 180 LSVDINAKNIDNVNVSILSMGMTNDYEVAIEEGATMVRVGTGIFGERNYTT 230
>gi|300723967|ref|YP_003713281.1| hypothetical protein XNC1_3109 [Xenorhabdus nematophila ATCC 19061]
gi|297630498|emb|CBJ91163.1| putative enzyme with PLP-binding domain [Xenorhabdus nematophila
ATCC 19061]
Length = 231
Score = 291 bits (747), Expect = 3e-77, Method: Composition-based stats.
Identities = 72/229 (31%), Positives = 105/229 (45%), Gaps = 8/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L + +I A R + ++L+AVSK I A++ GQ F EN +QE
Sbjct: 3 NIEQNLHDVRNRIALVAQKCGRIPEEITLLAVSKTKPVDDIAKAIASGQREFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K D+ FIG LQSNK + FD T+ R K A L+ + + L
Sbjct: 63 VEKIQHFDNHDDLVWHFIGPLQSNKSRLVAENFDWCHTIDRLKIAERLNEQRPENMAPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQ+N E KSGI+ + D L + GLM IP + + + ++
Sbjct: 123 VLIQINISGEESKSGILLEELIDLAAKINSLPNLVLRGLMAIPAPENDFERQLAVFHQME 182
Query: 182 R--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + LSMGMT D E AI G+T VRIG+ IFG R ++
Sbjct: 183 QAFIKLKRLYSPVDTLSMGMTDDMEAAITCGSTLVRIGTAIFGARQYRS 231
>gi|309703306|emb|CBJ02642.1| putative amino acid racemase [Escherichia coli ETEC H10407]
Length = 234
Score = 291 bits (747), Expect = 3e-77, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEFPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|222150238|ref|YP_002551195.1| hypothetical protein Avi_4380 [Agrobacterium vitis S4]
gi|221737220|gb|ACM38183.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 219
Score = 291 bits (747), Expect = 4e-77, Method: Composition-based stats.
Identities = 117/219 (53%), Positives = 156/219 (71%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ +L + +I +A A R ++V+LVAVSK D++ IR + GQ +F EN++QE
Sbjct: 1 MTIEERLDEVRTRIAAAAQEADRTPEAVTLVAVSKTFDAEAIRPVILHGQRVFGENRVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E +++L IG LQSNK +E V+LFDVIETV REK A L+ EM KQ R
Sbjct: 61 SQGKWPELKAETPEIELHLIGPLQSNKAAEAVALFDVIETVDREKIARALAEEMAKQGRQ 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L +Y+QVNTG E QK+GI P +TK FV LCR + L +EGLMCIPPA NP PHF LL++
Sbjct: 121 LRLYVQVNTGLEPQKAGIAPQETKAFVDLCRSELGLEIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A EC +++LSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LAGECGVSRLSMGMSGDYETAIAFGATSVRVGSAIFGHR 219
>gi|284922894|emb|CBG35983.1| putative amino acid racemase [Escherichia coli 042]
Length = 234
Score = 291 bits (747), Expect = 4e-77, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATSCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|168242903|ref|ZP_02667835.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|194449587|ref|YP_002047088.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194407891|gb|ACF68110.1| alanine racemase family [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|205338194|gb|EDZ24958.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
Length = 234
Score = 291 bits (747), Expect = 4e-77, Method: Composition-based stats.
Identities = 77/229 (33%), Positives = 109/229 (47%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K K D+ FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEDLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP + F + +
Sbjct: 123 LNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPAPESDYVRQFEVARQ 182
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|188493150|ref|ZP_03000420.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli 53638]
gi|188488349|gb|EDU63452.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli 53638]
Length = 234
Score = 291 bits (747), Expect = 4e-77, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDTGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|269960444|ref|ZP_06174817.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834871|gb|EEZ88957.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 236
Score = 291 bits (747), Expect = 4e-77, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 109/231 (47%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +I + R +SV L+AVSK + I A GQ+ F EN +QE
Sbjct: 3 SIQQNIEHITSQIRHDEQKCGRSPESVQLLAVSKTKPVEAILEAYQGGQLAFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + ++ FIG +QSNK + FD + TV R K A L+ + + +
Sbjct: 63 VSKVQHFAEHYPDNRIEWHFIGPIQSNKSRPVAEHFDWVHTVDRAKIAQRLNDQRPSELK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG+ + + L + L + GLM IP + + +
Sbjct: 123 PLQVLIQVNTSGEESKSGVSDAEIFELAELISRLPNLTLRGLMSIPANVPDYESQLRAFK 182
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + + LSMGM+ D + AI +G+T VRIG+ IFG R
Sbjct: 183 QLEALKQKLAQQYPDVDTLSMGMSGDMDAAIEAGSTMVRIGTAIFGARDYS 233
>gi|220916555|ref|YP_002491859.1| alanine racemase domain protein [Anaeromyxobacter dehalogenans
2CP-1]
gi|219954409|gb|ACL64793.1| alanine racemase domain protein [Anaeromyxobacter dehalogenans
2CP-1]
Length = 223
Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats.
Identities = 75/219 (34%), Positives = 111/219 (50%), Gaps = 10/219 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++L + + V+LVAVSK + IR A + GQ F EN QE
Sbjct: 1 MTIADRLAAIRADL----------PAGVTLVAVSKTQPPEAIREAYAAGQRDFGENYAQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L ++ FIG LQ+NK + ++ V RE+ A+ LS ++
Sbjct: 51 WRAKADALADLPGLRWHFIGGLQTNKAKYLAGRVALVHAVDREELAAELSRRFGQKGATA 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V ++VN G E K G P++ + R + + GLMCIPP +P+PHF L +
Sbjct: 111 RVLLEVNVGGEASKEGCPPDRVEALAAAVRALPSIELAGLMCIPPPEDDPRPHFRALRAL 170
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +LSMGM+ D+ +A+ GAT VR+GS IFG RP
Sbjct: 171 RDRLGLRELSMGMSADWRIAVEEGATLVRVGSAIFGARP 209
>gi|331654463|ref|ZP_08355463.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli M718]
gi|331047845|gb|EGI19922.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli M718]
Length = 234
Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYSHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|218706466|ref|YP_002413985.1| hypothetical protein ECUMN_3303 [Escherichia coli UMN026]
gi|293406458|ref|ZP_06650384.1| UPF0001 protein yggS [Escherichia coli FVEC1412]
gi|298382195|ref|ZP_06991792.1| yggS protein [Escherichia coli FVEC1302]
gi|331664534|ref|ZP_08365440.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli TA143]
gi|218433563|emb|CAR14466.1| putative enzyme [Escherichia coli UMN026]
gi|291426464|gb|EFE99496.1| UPF0001 protein yggS [Escherichia coli FVEC1412]
gi|298277335|gb|EFI18851.1| yggS protein [Escherichia coli FVEC1302]
gi|331058465|gb|EGI30446.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli TA143]
Length = 234
Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAQAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|77461540|ref|YP_351047.1| hypothetical protein Pfl01_5319 [Pseudomonas fluorescens Pf0-1]
gi|77385543|gb|ABA77056.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
Length = 228
Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats.
Identities = 75/225 (33%), Positives = 104/225 (46%), Gaps = 6/225 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + + +I + A R ++SV L+AVSK S+ +R A + G F EN LQEA
Sbjct: 3 TIADNILQVSSRIHAATAAAGRDENSVQLLAVSKTKPSEALREAYAAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L + FIG +QSNK I F + +V R K A LS + L
Sbjct: 63 LGKQLELADLPLI-WHFIGPIQSNKTRSIAEHFAWVHSVDRLKIAQRLSEQRPADLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ IQVN E KSG P +L + GLM IP + + +
Sbjct: 122 ICIQVNVSGEASKSGCTPQDLPALAQAISALPRLKLRGLMAIPEPTEDRAEQDAAFAAVQ 181
Query: 182 R-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 KLQAGLDLPLDTLSMGMSHDLESAIAQGATWVRIGTALFGARDYS 226
>gi|325579003|ref|ZP_08148959.1| YggS family pyridoxal phosphate enzyme [Haemophilus parainfluenzae
ATCC 33392]
gi|325159238|gb|EGC71372.1| YggS family pyridoxal phosphate enzyme [Haemophilus parainfluenzae
ATCC 33392]
Length = 234
Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats.
Identities = 80/232 (34%), Positives = 115/232 (49%), Gaps = 11/232 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L+ QKI+++ LA RP+ +V+L+AVSK ++ I A GQ F EN +QE
Sbjct: 1 MTIKQALETIHQKIQDATQLAHRPESAVTLLAVSKTKPNEAILEAYHAGQKAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + ++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVDKIQYFEAQNIQLEWHFIGPLQSNKTRLVAEHFDWMQTLERAKIADRLNEQRPANKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
L V IQ+N E KSGI PN+ + L + GLM IP N + F
Sbjct: 121 LNVLIQINISDEASKSGIQPNEMIELAKHIENLPHLRLRGLMAIPAPTDNIAEQEAAFSQ 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ ++ + K + LSMGMT D + AI G+T VRIG+ IFG R
Sbjct: 181 MEQLFEQLKVAFPHQQIDTLSMGMTDDMQTAIKCGSTMVRIGTAIFGARDYS 232
>gi|188534959|ref|YP_001908756.1| Conserved hypothetical protein YggS [Erwinia tasmaniensis Et1/99]
gi|188030001|emb|CAO97885.1| Conserved hypothetical protein YggS [Erwinia tasmaniensis Et1/99]
Length = 237
Score = 291 bits (746), Expect = 5e-77, Method: Composition-based stats.
Identities = 75/227 (33%), Positives = 107/227 (47%), Gaps = 9/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +Q+I +A R ++L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 SIKHNLQQVQQRISAAAAQCGRCPQEITLLAVSKTKPASAIEEAVAAGQHCFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D+ FIG LQSNK + FD TV R + A LS + L
Sbjct: 63 VDKI-QLLANPDLVWHFIGPLQSNKSRLVAENFDWCHTVDRLRIAERLSQQRPDPLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQ+N E KSGIM + +L + GLM IP + + ++A
Sbjct: 122 VLIQINISAEQSKSGIMLAELPALAQQIAALPRLKLRGLMAIPAPQDDYASQLAVCQQMA 181
Query: 182 --------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + LS+GM+ D + AIA+G+ VRIG+ IFG R
Sbjct: 182 AAFKQLQQQYPGVDTLSLGMSDDMDAAIAAGSNMVRIGTAIFGARDY 228
>gi|108806321|ref|YP_650237.1| hypothetical protein YPA_0324 [Yersinia pestis Antiqua]
gi|108813298|ref|YP_649065.1| hypothetical protein YPN_3138 [Yersinia pestis Nepal516]
gi|145597881|ref|YP_001161957.1| hypothetical protein YPDSF_0574 [Yersinia pestis Pestoides F]
gi|149367050|ref|ZP_01889083.1| hypothetical protein YPE_2328 [Yersinia pestis CA88-4125]
gi|167468160|ref|ZP_02332864.1| hypothetical protein YpesF_09734 [Yersinia pestis FV-1]
gi|170023081|ref|YP_001719586.1| alanine racemase domain-containing protein [Yersinia
pseudotuberculosis YPIII]
gi|218928113|ref|YP_002345988.1| hypothetical protein YPO0941 [Yersinia pestis CO92]
gi|229837634|ref|ZP_04457796.1| predicted enzyme [Yersinia pestis Pestoides A]
gi|229840860|ref|ZP_04461019.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229842579|ref|ZP_04462734.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195]
gi|229903761|ref|ZP_04518874.1| predicted enzyme [Yersinia pestis Nepal516]
gi|108776946|gb|ABG19465.1| hypothetical protein YPN_3138 [Yersinia pestis Nepal516]
gi|108778234|gb|ABG12292.1| hypothetical protein YPA_0324 [Yersinia pestis Antiqua]
gi|115346724|emb|CAL19607.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145209577|gb|ABP38984.1| hypothetical protein YPDSF_0574 [Yersinia pestis Pestoides F]
gi|149290664|gb|EDM40740.1| hypothetical protein YPE_2328 [Yersinia pestis CA88-4125]
gi|169749615|gb|ACA67133.1| alanine racemase domain protein [Yersinia pseudotuberculosis YPIII]
gi|229679531|gb|EEO75634.1| predicted enzyme [Yersinia pestis Nepal516]
gi|229690889|gb|EEO82943.1| predicted enzyme [Yersinia pestis biovar Orientalis str. India 195]
gi|229697226|gb|EEO87273.1| predicted enzyme [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229704322|gb|EEO91333.1| predicted enzyme [Yersinia pestis Pestoides A]
gi|320013977|gb|ADV97548.1| putative enzyme [Yersinia pestis biovar Medievalis str. Harbin 35]
Length = 232
Score = 291 bits (746), Expect = 5e-77, Method: Composition-based stats.
Identities = 73/225 (32%), Positives = 106/225 (47%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + +I +A R + V+L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K ++ FIG LQSNK + F TV R K A LS + L
Sbjct: 63 VDKIHSFVDNKTLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPALN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
V IQ+N E K+GI ++ L + GLM IP + + + +++
Sbjct: 123 VLIQINISDEQSKAGISLSELPALADSISTLPNLCLRGLMAIPAPEHDYQRQLAVFTQMN 182
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
AR ++ LSMGMT D + AI++G+T VRIG+ IFG R
Sbjct: 183 QAFLTLKARYPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGAR 227
>gi|119470546|ref|ZP_01613249.1| hypothetical protein ATW7_12046 [Alteromonadales bacterium TW-7]
gi|119446247|gb|EAW27524.1| hypothetical protein ATW7_12046 [Alteromonadales bacterium TW-7]
Length = 237
Score = 291 bits (746), Expect = 5e-77, Method: Composition-based stats.
Identities = 83/225 (36%), Positives = 113/225 (50%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L +I N+A R KD ++L+AVSK S I A + GQ F E+ +QEA
Sbjct: 12 TIAERLTCAYARISNAAKNTHRSKDEITLLAVSKTKPSDDIVAAYNYGQRQFGESYVQEA 71
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D+ FIG +QSNK + + FD +++V R K A L+ + L
Sbjct: 72 VDKIAQLHTYSDIIWHFIGPIQSNKSALVAENFDWVQSVDRIKIAKRLNAQRPTSKPPLN 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V IQVN E KSG PN + Q QL + GLM IP +P +F L
Sbjct: 132 VLIQVNISAEEAKSGCHPNDIANLADFISQCDQLRLRGLMSIPAKSDDPTTQTQYFEQLQ 191
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K L LSMGM+ D E AI++G+T VRIG+ IFG R
Sbjct: 192 TCFDKLKAQYPQLDTLSMGMSNDVEAAISAGSTMVRIGTDIFGTR 236
>gi|59711037|ref|YP_203813.1| hypothetical protein VF_0430 [Vibrio fischeri ES114]
gi|59479138|gb|AAW84925.1| predicted enzyme [Vibrio fischeri ES114]
Length = 236
Score = 291 bits (746), Expect = 5e-77, Method: Composition-based stats.
Identities = 77/232 (33%), Positives = 112/232 (48%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + +IENS R DSV L+AVSK + + A+ GQ IF EN +QE
Sbjct: 3 SIKQNINQITHQIENSIQKCGRNPDSVQLLAVSKTKPIELLEQAIEAGQRIFGENYVQEG 62
Query: 62 KKKWIPLRKE---WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K +K+ ++ FIG +QSNK I FD + +V R K A L+ + +
Sbjct: 63 IEKVQYFQKQHSTTSLEWHFIGPIQSNKTRPIAEHFDWVHSVERLKIAQRLNDQRPSELG 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG + + + L + GLM IP + N
Sbjct: 123 ELNVLIQVNTSSEESKSGTTAEEVMELAAAINKMPNLTLRGLMSIPANVSNYAEQLAAFK 182
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ A+ ++ LSMGM+ D + AI +G+T VRIG+ IFG R +
Sbjct: 183 QLTSIQNQLRAQYPQIDTLSMGMSGDMDAAIEAGSTMVRIGTAIFGARDYKN 234
>gi|153835263|ref|ZP_01987930.1| conserved hypothetical protein [Vibrio harveyi HY01]
gi|148868238|gb|EDL67378.1| conserved hypothetical protein [Vibrio harveyi HY01]
Length = 236
Score = 291 bits (745), Expect = 5e-77, Method: Composition-based stats.
Identities = 70/231 (30%), Positives = 108/231 (46%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +I + R +SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITSQIRHDEQKCGRSPESVQLLAVSKTKPVEAILEAYQAGQEAFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + ++ FIG +QSNK + FD + T+ R K A L+ + + +
Sbjct: 63 VSKVQHFAEHYPDNRIEWHFIGPIQSNKSRPVAEHFDWVHTIDRAKIAQRLNDQRPSELK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG+ + + L + L + GLM IP + + +
Sbjct: 123 PLQVLIQVNTSGEESKSGVADAEIFELAELISRLPNLTLRGLMSIPANVPDYESQLRAFK 182
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + + LSMGM+ D + AI +G+T VRIG+ IFG R
Sbjct: 183 QLEELKQKLAQQYPDVDTLSMGMSGDMDAAIEAGSTMVRIGTAIFGARDYS 233
>gi|218550198|ref|YP_002383989.1| hypothetical protein EFER_2890 [Escherichia fergusonii ATCC 35469]
gi|218357739|emb|CAQ90383.1| putative enzyme [Escherichia fergusonii ATCC 35469]
Length = 234
Score = 291 bits (745), Expect = 5e-77, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELSP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|332086880|gb|EGI92016.1| hypothetical protein SB521682_3506 [Shigella boydii 5216-82]
Length = 234
Score = 291 bits (745), Expect = 5e-77, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRHFQELGVTRLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|323669740|emb|CBJ94864.1| conserved hypothetical protein [Salmonella bongori]
Length = 237
Score = 291 bits (745), Expect = 5e-77, Method: Composition-based stats.
Identities = 76/229 (33%), Positives = 109/229 (47%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAYIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP + F + +
Sbjct: 123 LNVLIQINISDENSKSGIPLTELDELAVAVAALPRLKLRGLMAIPAPESDYVRQFEVARQ 182
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFGGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|183596314|ref|ZP_02958342.1| hypothetical protein PROSTU_00049 [Providencia stuartii ATCC 25827]
gi|188023918|gb|EDU61958.1| hypothetical protein PROSTU_00049 [Providencia stuartii ATCC 25827]
Length = 231
Score = 291 bits (745), Expect = 5e-77, Method: Composition-based stats.
Identities = 74/228 (32%), Positives = 104/228 (45%), Gaps = 8/228 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + K +IE +A R ++L+AVSK I A+ GQ F EN +QE
Sbjct: 1 MTIQRNISDVKARIERAAAECHRSAQDITLLAVSKTKPCDAILEAIEAGQRQFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K D+ FIG LQSNK + FD T+ R+K A L+ + L
Sbjct: 61 GVEKIQFFADRQDLVWHFIGPLQSNKSRLVAEHFDWFHTLDRQKIAQRLNDQRPSNKAPL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQ+N E KSGI + + Q L GLM IP + + F +
Sbjct: 121 NVLIQINISDENSKSGIKLEEFDELAKQVSQMPNLVFRGLMTIPAPESDYQRQCEAFRKM 180
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ ++ + + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 EQAYQQLQTHYPSVDTLSMGMTDDMAAAIHCGSTLVRIGTAIFGARDY 228
>gi|315127644|ref|YP_004069647.1| PLP-binding domain-containing protein [Pseudoalteromonas sp.
SM9913]
gi|315016158|gb|ADT69496.1| PLP-binding domain-containing protein [Pseudoalteromonas sp.
SM9913]
Length = 237
Score = 291 bits (745), Expect = 6e-77, Method: Composition-based stats.
Identities = 76/225 (33%), Positives = 112/225 (49%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L +I +A A+R + ++L+AVSK + I A GQ F E+ +QEA
Sbjct: 12 TIAERLTSAYARIAEAAHKAQRNSNDITLLAVSKTKPATDIMAAYEQGQRQFGESYVQEA 71
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D+ FIG +QSNK + + + F +++V R K A L+ + + L
Sbjct: 72 VDKIAQLDTFSDIVWHFIGPIQSNKSALVAANFAWVQSVDRLKIAKRLNSQRPETMPPLN 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLS 178
V IQVN E KSG PN+ + Q L + GLM IP + +F L
Sbjct: 132 VLIQVNISEEEAKSGCHPNEITELAQYIDQCAHLQLRGLMAIPAKSDDTNTQIQYFEQLQ 191
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + LSMGM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 192 TCFDKLQTQYPHIDTLSMGMSNDVEAAIAAGSTMVRIGTDIFGTR 236
>gi|291550389|emb|CBL26651.1| pyridoxal phosphate enzyme, YggS family [Ruminococcus torques
L2-14]
Length = 230
Score = 291 bits (745), Expect = 6e-77, Method: Composition-based stats.
Identities = 76/229 (33%), Positives = 115/229 (50%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ + KI+ + A R ++ V+L+AVSK + ++ A G +F ENK+QE
Sbjct: 2 LETQLKEVEAKIQAACDRAGRKREEVTLIAVSKTKPIEMLQEAYDLGVRVFGENKVQEIT 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L D+ IG LQ+NKV I+ D+I +V K A + E K + +
Sbjct: 62 AKYDALPD--DIHWHMIGHLQTNKVKYIIDKVDLIHSVDSVKLAETIEKEAAKHNLTANI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSE 179
I+VN E K G+ + F+ + V GLM I P + NP+ + F L +
Sbjct: 120 LIEVNVAQEESKFGLKTEEVLPFIEKIANFEHIKVCGLMTIAPFVDNPEENRQIFANLHK 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 180 LSVDINEKNIDNVYVNILSMGMTNDYEVAIEEGATMVRVGTGIFGARNY 228
>gi|120553473|ref|YP_957824.1| alanine racemase domain-containing protein [Marinobacter aquaeolei
VT8]
gi|120323322|gb|ABM17637.1| alanine racemase domain protein [Marinobacter aquaeolei VT8]
Length = 237
Score = 291 bits (745), Expect = 7e-77, Method: Composition-based stats.
Identities = 74/231 (32%), Positives = 112/231 (48%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + + ++I+ + + A R SV L+AVSK ++ ++ A GQ+ F EN LQEA
Sbjct: 3 SIADNIGSVTRRIQKATLQAGREPGSVRLLAVSKTRPAEDLKAAFEAGQIAFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L ++ FIG +QSNK +I F + +V R K A LS + + L
Sbjct: 63 LDKMQALSDIEGIEWHFIGPIQSNKTRQIAEAFAWVHSVDRLKIARRLSEQRPETLPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QVN E KSG ++ + + + L + GLM IP ++A
Sbjct: 123 ICLQVNINNEDSKSGCTLDELDELLEAIGELPNLRLRGLMAIPDPDQPEAELRLSFRKLA 182
Query: 182 REC-----------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L LSMGM+ D E+AIA GAT VR+G+ +FG RP +
Sbjct: 183 STLTKLRQDHPEAGPLDTLSMGMSDDLEMAIAEGATWVRVGTALFGARPAK 233
>gi|157374371|ref|YP_001472971.1| alanine racemase domain-containing protein [Shewanella sediminis
HAW-EB3]
gi|157316745|gb|ABV35843.1| alanine racemase domain protein [Shewanella sediminis HAW-EB3]
Length = 234
Score = 290 bits (744), Expect = 7e-77, Method: Composition-based stats.
Identities = 80/226 (35%), Positives = 117/226 (51%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +I +A + R D + L+AVSK I A + GQ +F EN +QE
Sbjct: 3 TIADRLANAQHRITQAAKFSSRNADEIQLLAVSKTKPITDIIAAYAAGQRLFGENYVQEG 62
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L+ ++Q FIG LQSNK + LFD + T+ R+K A L+ + + L
Sbjct: 63 ESKVNELKSICPEIQWHFIGPLQSNKTKVVAGLFDWMHTLCRDKIAVRLNDQRPDALKPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
+ IQVN E KSGI+P++ +L + GLM IP A + + F L
Sbjct: 123 NICIQVNISGEASKSGIVPSELMVLANTIDTLPKLTLRGLMAIPTATDDKRKQKDEFQQL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K L LSMGM+ D E A+ G+T VRIGS IFGER
Sbjct: 183 QSLFLKLKAIYPDLDTLSMGMSNDLEQAVEHGSTMVRIGSAIFGER 228
>gi|323978754|gb|EGB73835.1| YggS family protein pyridoxal phosphate enzyme [Escherichia coli
TW10509]
Length = 234
Score = 290 bits (744), Expect = 7e-77, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPH 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|315181245|gb|ADT88159.1| hypothetical protein vfu_A03051 [Vibrio furnissii NCTC 11218]
Length = 235
Score = 290 bits (744), Expect = 7e-77, Method: Composition-based stats.
Identities = 81/230 (35%), Positives = 108/230 (46%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ L+ +IEN+ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNLEHITSQIENAQQKCGRSRSSVQLLAVSKTKPVEAILEAAEAGQRAFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + E D++ FIG LQSNK I FD + T+ R K A LS +
Sbjct: 63 CDKVQFFAEHHPELDLEWHFIGPLQSNKTRLIAEHFDWMHTIDRAKIAQRLSEQRPAHLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFY 175
L V IQVNT E KSG+ N L L + GLM IP + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGVSENDLFTLAELISGLPNLTLRGLMSIPENVPDYASQLAAFR 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ + + + LSMGM+ D AI +G+T VRIG+ IFG+R
Sbjct: 183 QLAALKDQLAEKYDGIDTLSMGMSGDMAAAIEAGSTIVRIGTAIFGQRDY 232
>gi|237798174|ref|ZP_04586635.1| hypothetical protein POR16_04969 [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331021026|gb|EGI01083.1| hypothetical protein POR16_04969 [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 228
Score = 290 bits (744), Expect = 7e-77, Method: Composition-based stats.
Identities = 78/224 (34%), Positives = 107/224 (47%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A A R SV L+AVSK + +R A + G + F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAAHAANRDPASVGLLAVSKTKPASDLREAYTEGLLHFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L + FIG +QSNK I F + +V R K A LS + L
Sbjct: 63 LGKQLELTDLP-LCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPDALEPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+ IQVN E KSG P + +L + GLM IP +P F +
Sbjct: 122 ICIQVNVSGEASKSGCAPQDLPELAAAINVLPRLKLRGLMAIPEPTDDPHEQAAAFAAVR 181
Query: 179 EIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 TLQEQLGLPLDTLSMGMSNDLEAAIAQGATWVRIGTALFGARDY 225
>gi|313903980|ref|ZP_07837360.1| alanine racemase domain protein [Eubacterium cellulosolvens 6]
gi|313471129|gb|EFR66451.1| alanine racemase domain protein [Eubacterium cellulosolvens 6]
Length = 230
Score = 290 bits (744), Expect = 8e-77, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 104/230 (45%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L I ++ A R V+L+AVSK I G F EN +QE +
Sbjct: 2 LTENYDKVLGNIRSACERAGRDASEVTLIAVSKTKPESDIMELYDHGVRDFGENYIQELR 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L D++ IG LQ NKV I +I V + A + E K R +PV
Sbjct: 62 EKHEHLPS--DIRWHMIGHLQRNKVKYIAEYVTMIHAVDTLELAKTIEKEAAKHDRVIPV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSE 179
I+VN E K G+ P +TK+FV ++V GLM P + N + + F L E
Sbjct: 120 LIEVNVAGEESKFGVAPEETKEFVKAVSVLPHVHVSGLMTSAPFVKNAEENRSVFEKLHE 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + LSMGMT D+ +A+ GAT VR+G+ IFG R
Sbjct: 180 LSVDINRENIDNVTMRVLSMGMTNDYNVAVEEGATLVRVGTAIFGARDYS 229
>gi|288933579|ref|YP_003437638.1| alanine racemase [Klebsiella variicola At-22]
gi|290511354|ref|ZP_06550723.1| YggS family pyridoxal phosphate enzyme [Klebsiella sp. 1_1_55]
gi|288888308|gb|ADC56626.1| alanine racemase domain protein [Klebsiella variicola At-22]
gi|289776347|gb|EFD84346.1| YggS family pyridoxal phosphate enzyme [Klebsiella sp. 1_1_55]
Length = 233
Score = 290 bits (744), Expect = 9e-77, Method: Composition-based stats.
Identities = 76/230 (33%), Positives = 106/230 (46%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISGAAARCGRAPEEVTLLAVSKTKPASAIEEAIVAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K ++ +Q FIG LQSNK + FD TV R K A+ L+ +
Sbjct: 63 VEKINHFQQAGISGLQWHFIGPLQSNKSRLVAEHFDWCHTVDRLKIATRLNEQRPAHLPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + L + GLM IP F + +
Sbjct: 123 LKVLIQINISDEQSKSGIPLEALDGLAAEIAELPHLELRGLMAIPAPESEYVRQFAVAQQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFARLKTRYPTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|327412910|emb|CAX67924.1| conserved hypothetical protein [Salmonella bongori]
Length = 234
Score = 290 bits (743), Expect = 9e-77, Method: Composition-based stats.
Identities = 76/229 (33%), Positives = 108/229 (47%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAYIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP + F + +
Sbjct: 123 LNVLIQINISDENSKSGIPLAELDELAAAVAILPRLRLRGLMAIPAPESDYVRQFEVARQ 182
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|261822844|ref|YP_003260950.1| alanine racemase domain protein [Pectobacterium wasabiae WPP163]
gi|261606857|gb|ACX89343.1| alanine racemase domain protein [Pectobacterium wasabiae WPP163]
Length = 237
Score = 290 bits (743), Expect = 9e-77, Method: Composition-based stats.
Identities = 72/232 (31%), Positives = 108/232 (46%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ +Q+I +A R + ++L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDIRQQIATAAQHCARSPEDITLLAVSKTKPVSAIEEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K ++ + ++ FIG LQSNK + FD TV R + A LS +
Sbjct: 63 VEKVHYFQENHPDTPLEWHFIGPLQSNKSRLVAENFDWFHTVDRLRIAQRLSEQRPTTLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L + +Q+N E KSGIM + + L + GLM IP + + +
Sbjct: 123 PLNILLQINISSEPSKSGIMVAELAELATSVAVLPNLRLRGLMAIPAPETDYEQQIAVFK 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++A + LSMGMT D AI +G+T VRIG+ IFG R
Sbjct: 183 QMAALLQTLSVNYPHIDTLSMGMTDDMRAAITAGSTLVRIGTAIFGARDYSA 234
>gi|153814893|ref|ZP_01967561.1| hypothetical protein RUMTOR_01108 [Ruminococcus torques ATCC 27756]
gi|317500406|ref|ZP_07958630.1| YggS family Pyridoxal phosphate enzyme [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089587|ref|ZP_08338486.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
3_1_46FAA]
gi|145847924|gb|EDK24842.1| hypothetical protein RUMTOR_01108 [Ruminococcus torques ATCC 27756]
gi|316898161|gb|EFV20208.1| YggS family Pyridoxal phosphate enzyme [Lachnospiraceae bacterium
8_1_57FAA]
gi|330404955|gb|EGG84493.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
3_1_46FAA]
Length = 230
Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ +++I+++ A R ++ ++L+AVSK ++ A G IF ENK+QE +
Sbjct: 2 LKENLKTVEERIQSACKKAGRKREEITLIAVSKTKPPHMLQEAYDLGVRIFGENKVQEIR 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ L K D+ IG LQ+NKV IV +I +V K ++ E KQ+R + +
Sbjct: 62 EKYEVLPK--DIDWHMIGHLQTNKVKYIVDKVKLIHSVDSFKLGEVIEKEAAKQNRIIDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSE 179
++VN E K G+ + + Q + V+GLM I P + NP+ + F L +
Sbjct: 120 LLEVNVAQESSKFGLKTEEVIPLMEKFSQLPHIRVKGLMTIAPFVENPEENRAIFADLHK 179
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + K ++ LSMGMT D+E+AI GAT VRIG+GIFG R
Sbjct: 180 LYVDIKQKNIDNGTVSILSMGMTNDYEVAIEEGATMVRIGTGIFGARNY 228
>gi|153947334|ref|YP_001399814.1| hypothetical protein YpsIP31758_0830 [Yersinia pseudotuberculosis
IP 31758]
gi|152958829|gb|ABS46290.1| conserved hypothetical protein TIGR00044 [Yersinia
pseudotuberculosis IP 31758]
Length = 232
Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats.
Identities = 72/225 (32%), Positives = 106/225 (47%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + +I +A R + V+L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDVRARIATAAHNCGRSPEEVTLLAVSKTKPVAAIEKAIAAGQYAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K ++ FIG LQSNK + F TV R K A LS + L
Sbjct: 63 VDKIHSFADNKTLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPALN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
+ IQ+N E K+GI ++ L + GLM IP + + + +++
Sbjct: 123 ILIQINISDEQSKAGISLSELPALADSISTLPNLCLRGLMAIPAPEHDYQRQLAVFTQMN 182
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
AR ++ LSMGMT D + AI++G+T VRIG+ IFG R
Sbjct: 183 QAFLTLKARSPQIDTLSMGMTDDMDAAISAGSTLVRIGTAIFGAR 227
>gi|226324964|ref|ZP_03800482.1| hypothetical protein COPCOM_02756 [Coprococcus comes ATCC 27758]
gi|225206312|gb|EEG88666.1| hypothetical protein COPCOM_02756 [Coprococcus comes ATCC 27758]
Length = 232
Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats.
Identities = 76/229 (33%), Positives = 121/229 (52%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ + ++ + + R ++ V+L+AVSK + + A + G F ENK+QE
Sbjct: 2 ITENLKDVEARVCAACERSGRKREDVTLIAVSKTKPVEMLEEAYAYGCRYFGENKVQELD 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ + K D+ + IG LQ NKV I+ ++I +V + A + E K+ + V
Sbjct: 62 EKYDIMPK--DIHWQMIGHLQRNKVKYIIDKAELIHSVDSIRLAETIDKEAAKKGIVVNV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
++VN E K G+MP + DF+ + + V+GLM I P + NP+ HF L +
Sbjct: 120 LLEVNMAKEDTKFGLMPEEVMDFIHEIVRFQHIKVQGLMTIAPFVENPEENRIHFANLRK 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ ++ LSMGMT DFE+AI GAT VRIG+ IFGER
Sbjct: 180 LSVDIAKEKVDNVNMSILSMGMTNDFEVAIEEGATMVRIGTAIFGERNY 228
>gi|167552008|ref|ZP_02345761.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205323350|gb|EDZ11189.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
Length = 234
Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats.
Identities = 76/229 (33%), Positives = 109/229 (47%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAYIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K +K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQKAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP + F + +
Sbjct: 123 LNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPAPESDYVRQFEVARQ 182
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|260767465|ref|ZP_05876402.1| hypothetical protein VFA_000516 [Vibrio furnissii CIP 102972]
gi|260617577|gb|EEX42759.1| hypothetical protein VFA_000516 [Vibrio furnissii CIP 102972]
Length = 235
Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats.
Identities = 80/230 (34%), Positives = 108/230 (46%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ L+ +IEN+ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNLEHITSQIENAQQKCGRSRSSVQLLAVSKTKPVEAILEAAEAGQRAFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + E +++ FIG LQSNK I FD + T+ R K A LS +
Sbjct: 63 CDKVQFFAEHHPELNLEWHFIGPLQSNKTRLIAEHFDWMHTIDRAKIAQRLSEQRPAHLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFY 175
L V IQVNT E KSG+ N L L + GLM IP + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGVSENDLFTLAELISSLPNLTLRGLMSIPENVPDYASQLAAFR 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ + + + LSMGM+ D AI +G+T VRIG+ IFG+R
Sbjct: 183 QLAALKDQLAEKYDGIDTLSMGMSGDMAAAIEAGSTIVRIGTAIFGQRDY 232
>gi|16761875|ref|NP_457492.1| hypothetical protein STY3253 [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29143362|ref|NP_806704.1| hypothetical protein t3012 [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56415038|ref|YP_152113.1| hypothetical protein SPA2963 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161506348|ref|YP_001573460.1| hypothetical protein SARI_04545 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|168234349|ref|ZP_02659407.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|194469044|ref|ZP_03075028.1| alanine racemase family [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|197247706|ref|YP_002148014.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197363967|ref|YP_002143604.1| hypothetical protein SSPA2762 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|213051780|ref|ZP_03344658.1| hypothetical protein Salmoneentericaenterica_01903 [Salmonella
enterica subsp. enterica serovar Typhi str. E00-7866]
gi|213648206|ref|ZP_03378259.1| hypothetical protein SentesTy_13494 [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|289825940|ref|ZP_06545099.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
gi|25304591|pir||AD0878 conserved hypothetical protein STY3253 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16504177|emb|CAD02924.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138996|gb|AAO70564.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56129295|gb|AAV78801.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|160867695|gb|ABX24318.1| hypothetical protein SARI_04545 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|194455408|gb|EDX44247.1| alanine racemase family [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|197095444|emb|CAR61003.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197211409|gb|ACH48806.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|205331691|gb|EDZ18455.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
Length = 234
Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats.
Identities = 76/229 (33%), Positives = 108/229 (47%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP + F + +
Sbjct: 123 LNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPAPESDYVRQFEVARQ 182
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|319790041|ref|YP_004151674.1| alanine racemase domain protein [Thermovibrio ammonificans HB-1]
gi|317114543|gb|ADU97033.1| alanine racemase domain protein [Thermovibrio ammonificans HB-1]
Length = 228
Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 119/229 (51%), Gaps = 10/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ ++IE +A+ A R + V L+A SK ++I+ A G +F EN++QE
Sbjct: 1 MGIRENVEKVLKQIEEAALRAGRRPEEVKLLAASKTRTPQEIKEAYEAGVKLFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++K L Q IG LQ+NKV V LFD IE+V RE L + ++ + +
Sbjct: 61 AREKIPQLAD-LKAQWHMIGHLQTNKVKYAVKLFDCIESVDREGLVEELQKRLSREGKVM 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
PV I+V E K G +P + L ++GLM +PP +P +P+F L
Sbjct: 120 PVLIEVKLSPEESKHGCLPQELPRLTEKVLNSPNLKLKGLMTVPPYFEDPEKVRPYFAEL 179
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E + L +LSMGM+ DF +A+ GAT VR+G+ IFG R
Sbjct: 180 RRLRDELQEKFKVELPELSMGMSHDFPVAVEEGATIVRVGTAIFGPRNY 228
>gi|222054661|ref|YP_002537023.1| alanine racemase domain protein [Geobacter sp. FRC-32]
gi|221563950|gb|ACM19922.1| alanine racemase domain protein [Geobacter sp. FRC-32]
Length = 230
Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats.
Identities = 85/232 (36%), Positives = 123/232 (53%), Gaps = 13/232 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L +++IE +A+ A R SV LV VSKM + A GQ +F EN +QE
Sbjct: 1 MSIADNLGQIEKRIEKAAVKAGREPASVRLVVVSKMQQPSAVDDAARAGQRLFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + ++ V FIGSLQSNKV +I L ++I +V R A + + K R
Sbjct: 61 LVSKVSQVGEQ--VTWHFIGSLQSNKVRQIAGLVEMIHSVDRLSLAREIDRQWQKLGRIC 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V +QVN E KSG + + V + ++GLM +PP +P +P+F L
Sbjct: 119 NVLVQVNVAGEATKSGSSAGELLELVRNISLLPNVRIKGLMTMPPFFDDPEGARPYFREL 178
Query: 178 SEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+++R ++ +LSMGM+ DFE+AI GAT VR+GS IFGER
Sbjct: 179 RDLSRMIADEPIANVEMNELSMGMSGDFEVAIEEGATLVRVGSAIFGERQAS 230
>gi|293449281|ref|ZP_06663702.1| YggS family pyridoxal phosphate enzyme [Escherichia coli B088]
gi|291322371|gb|EFE61800.1| YggS family pyridoxal phosphate enzyme [Escherichia coli B088]
Length = 234
Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIALNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|218672950|ref|ZP_03522619.1| hypothetical protein RetlG_15628 [Rhizobium etli GR56]
Length = 219
Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats.
Identities = 116/219 (52%), Positives = 149/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I A RP SV LVAVSK +++ IR A+ G IF EN++QE
Sbjct: 1 MELQERLNDVRSRIAAGERQAGRPAGSVRLVAVSKTFEAEAIRPAIEAGLRIFGENRVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E D++L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q R
Sbjct: 61 SQGKWPALKAEHPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQDRR 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y+QVNTG E QK+GI P+ T FV LCR + L +EGLMCIPPA NP PHF LL++
Sbjct: 121 PRLYVQVNTGLEPQKAGIAPDDTPAFVSLCRGELGLLIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LASKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGAR 219
>gi|27364896|ref|NP_760424.1| hypothetical protein VV1_1525 [Vibrio vulnificus CMCP6]
gi|27361041|gb|AAO09951.1| protein of unknown function [Vibrio vulnificus CMCP6]
Length = 236
Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats.
Identities = 76/232 (32%), Positives = 110/232 (47%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +I +S R +DSV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITTQIHDSTQKCGRARDSVQLLAVSKTKPVEAILEAYHAGQRAFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K + E ++ FIG +QSNK + F + T+ R+K A L+ + +
Sbjct: 63 VEKVRFFAEQHPEKSIEWHFIGPIQSNKSRLVAEHFAWVHTIDRDKIAQRLNDQRPAELP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFY 175
L V IQVNT E KSG+ + L L + GLM IP + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGVSGEEIFALAELISTLPNLTLRGLMSIPENVDDHASQLAAFQ 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L+E+ + + LSMGM+ D + AI SG+T VRIG+ IFG R
Sbjct: 183 PLAELQQRLVQRYPSVDTLSMGMSGDMDAAIESGSTMVRIGTAIFGHRDYSN 234
>gi|145629031|ref|ZP_01784830.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
22.1-21]
gi|144978534|gb|EDJ88257.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
22.1-21]
Length = 236
Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats.
Identities = 76/226 (33%), Positives = 108/226 (47%), Gaps = 11/226 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQGVNLEWHFIGPLQSNKTRLVAEHFDWMQTLDRVKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V IQ+N E KSGI P + L + GLM IP N F
Sbjct: 121 LNVLIQINISDEESKSGIQPGEMLTLAKHIENLPHLCLRGLMAIPAPTDNIAEQEAVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+S++ + K + LSMGMT D AI G+T VRIG+ IF
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGTAIF 226
>gi|204928220|ref|ZP_03219420.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|204322542|gb|EDZ07739.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
Length = 234
Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats.
Identities = 76/229 (33%), Positives = 108/229 (47%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP + F + +
Sbjct: 123 LNVLIQINISDENSKSGIPLAELDELAAAVATMPRLRLRGLMAIPAPESDYVRQFEVARQ 182
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|238917083|ref|YP_002930600.1| hypothetical protein EUBELI_01153 [Eubacterium eligens ATCC 27750]
gi|238872443|gb|ACR72153.1| Hypothetical protein EUBELI_01153 [Eubacterium eligens ATCC 27750]
Length = 230
Score = 290 bits (742), Expect = 1e-76, Method: Composition-based stats.
Identities = 69/230 (30%), Positives = 108/230 (46%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L ++ I+ + + R + V LVAVSK + + CG F EN +QE
Sbjct: 2 LKDNLIEVEEHIKKACEKSGRNPEDVCLVAVSKTKPKEMLMEVYDCGIRQFGENYVQEMV 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L K D+ IG LQ NKV +V +I +V E+ A +S + +K+ +
Sbjct: 62 DKTDTLPK--DITWHMIGHLQRNKVKYVVGRAALIHSVDSERLAVAISDDAVKKGLVQDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
I+VN E K G+ ++ ++FV + + G M P + NP + +F L +
Sbjct: 120 LIEVNVAGEENKFGVTCDEAEEFVKKIAVLPGIRIRGFMTSAPFVENPEDNRKYFRELKQ 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + LSMGMT D+ +A+ GAT VR+G+ IFG R
Sbjct: 180 LLVDINNKNIDNVYMNVLSMGMTNDYTVAVEEGATHVRVGTAIFGARDYS 229
>gi|213850160|ref|ZP_03381058.1| hypothetical protein SentesT_00608 [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 237
Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats.
Identities = 76/229 (33%), Positives = 108/229 (47%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP + F + +
Sbjct: 123 LNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPAPESDYVRQFEVARQ 182
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|187736250|ref|YP_001878362.1| alanine racemase domain protein [Akkermansia muciniphila ATCC
BAA-835]
gi|187426302|gb|ACD05581.1| alanine racemase domain protein [Akkermansia muciniphila ATCC
BAA-835]
Length = 231
Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats.
Identities = 81/229 (35%), Positives = 112/229 (48%), Gaps = 11/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ +I + + A RP SV LVAVSK ++ ++ GQ IF ENK+QE
Sbjct: 1 MSIQQNLEHILSRIRAAELRAGRPAGSVRLVAVSKTFPAEDVKACHDAGQRIFGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L D + IG LQ NKV + + F +I V + A + + +
Sbjct: 61 GLGKIPSLP--PDTEWHLIGPLQRNKVRKALEYFTLIHAVDSLRLARFMDTVAQETGKRP 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+ ++VN G E K G P + L + GLMCIPP + NP +P+F L
Sbjct: 119 RILLEVNVGNEDSKFGFFPETLEKEWPELSSLNHLEIAGLMCIPPPVENPEEARPYFRRL 178
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ LT+LSMGM+ DFE AI GAT VR+G+ IFG R
Sbjct: 179 RELKEVLSGRGGATLTELSMGMSHDFETAIEEGATLVRVGTAIFGGRSY 227
>gi|16766401|ref|NP_462016.1| hypothetical protein STM3100 [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|62181610|ref|YP_218027.1| hypothetical protein SC3040 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161616064|ref|YP_001590029.1| hypothetical protein SPAB_03865 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167990373|ref|ZP_02571473.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168236168|ref|ZP_02661226.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|168264454|ref|ZP_02686427.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168463713|ref|ZP_02697630.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168819870|ref|ZP_02831870.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194445431|ref|YP_002042359.1| alanine racemase family [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194734660|ref|YP_002116048.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197262943|ref|ZP_03163017.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|198244385|ref|YP_002217075.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200386504|ref|ZP_03213116.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205354023|ref|YP_002227824.1| hypothetical protein SG2994 [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|224584893|ref|YP_002638692.1| hypothetical protein SPC_3165 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238909898|ref|ZP_04653735.1| hypothetical protein SentesTe_02020 [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|16421653|gb|AAL21975.1| putative enzyme with a TIM-barrel fold [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|62129243|gb|AAX66946.1| putative enzyme with a TIM-barrel fold [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161365428|gb|ABX69196.1| hypothetical protein SPAB_03865 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194404094|gb|ACF64316.1| alanine racemase family [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194710162|gb|ACF89383.1| alanine racemase family [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195633383|gb|EDX51797.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197241198|gb|EDY23818.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197290700|gb|EDY30054.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197938901|gb|ACH76234.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199603602|gb|EDZ02147.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205273804|emb|CAR38799.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205331123|gb|EDZ17887.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205343423|gb|EDZ30187.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205347039|gb|EDZ33670.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|224469421|gb|ACN47251.1| hypothetical protein SPC_3165 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|261248231|emb|CBG26068.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267995265|gb|ACY90150.1| hypothetical protein STM14_3744 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301159655|emb|CBW19174.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312914122|dbj|BAJ38096.1| hypothetical protein STMDT12_C31530 [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320087532|emb|CBY97297.1| Proline synthetase co-transcribed bacterial homolog protein
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|321225773|gb|EFX50827.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322716093|gb|EFZ07664.1| UPF0001 protein yggS [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
gi|323131456|gb|ADX18886.1| pyridoxal phosphate enzyme, YggS family [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|326624847|gb|EGE31192.1| UPF0001 protein yggS [Salmonella enterica subsp. enterica serovar
Dublin str. 3246]
gi|326629136|gb|EGE35479.1| pyridoxal phosphate enzyme [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
gi|332989967|gb|AEF08950.1| hypothetical protein STMUK_3088 [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 234
Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats.
Identities = 76/229 (33%), Positives = 108/229 (47%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAYIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP + F + +
Sbjct: 123 LNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPAPESDYVRQFEVARQ 182
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|295109994|emb|CBL23947.1| pyridoxal phosphate enzyme, YggS family [Ruminococcus obeum A2-162]
Length = 230
Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats.
Identities = 72/229 (31%), Positives = 112/229 (48%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ ++ IE + A R V+L++VSK ++ A G F ENK+QE
Sbjct: 2 VAENLEQVRKNIELACKEAGRDPKEVTLISVSKTKPVSMLQEAYDAGSRDFGENKVQEIM 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L D++ IG LQ NKV IV +I +V + A + E K S +PV
Sbjct: 62 DKVPQLPS--DIRWHMIGHLQRNKVKYIVDKVALIHSVDSLRLAETIEHEAAKHSVTVPV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN E K G+ + V +++EGLM I P + +P+ + + ++ +
Sbjct: 120 LIEVNVAQEESKFGLKTEEVLSLVESVASFPHIHIEGLMTIAPYVEDPEENRGIFRQLKK 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ LSMGMT D+++A+ GAT VR+G+GIFGER
Sbjct: 180 LSVDIAAKNINNVNMSVLSMGMTGDYQVAVQEGATMVRVGTGIFGERNY 228
>gi|37681058|ref|NP_935667.1| TIM-barrel fold family protein [Vibrio vulnificus YJ016]
gi|37199808|dbj|BAC95638.1| predicted enzyme with a TIM-barrel fold [Vibrio vulnificus YJ016]
Length = 236
Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats.
Identities = 76/232 (32%), Positives = 110/232 (47%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +I +S R +DSV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITTQIHDSTQKCGRARDSVQLLAVSKTKPVEAILEAYHAGQRAFGENYVQEG 62
Query: 62 KKK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K + E ++ FIG +QSNK + F + T+ R+K A L+ + +
Sbjct: 63 VEKVRFFAEQHPEKSIEWHFIGPIQSNKSRLVAEHFAWVHTIDRDKIAQRLNDQRPAELP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFY 175
L V IQVNT E KSG+ + L L + GLM IP + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGVSGEEIFALAELISTLPNLTLRGLMSIPENVDDHVSQLAAFQ 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L+E+ + + LSMGM+ D + AI SG+T VRIG+ IFG R
Sbjct: 183 PLAELQQRLLQRYPSVDTLSMGMSGDMDAAIESGSTMVRIGTAIFGHRDYSN 234
>gi|269101814|ref|ZP_06154511.1| hypothetical protein VDA_001230 [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161712|gb|EEZ40208.1| hypothetical protein VDA_001230 [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 233
Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats.
Identities = 76/230 (33%), Positives = 107/230 (46%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +I+ +A R DSV L+AVSK I A+ GQ F EN +QE
Sbjct: 3 SIKQNIEQVISEIDAAAKKCGRTADSVQLLAVSKTKPIAAIEEAIQAGQFAFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K R + FIG LQSNK + FD + +V R K A L+ +
Sbjct: 63 VEKIEHFRAHPQADALTWHFIGPLQSNKSRPVAENFDWVHSVDRLKIAQRLNDQRPTDLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V +Q+NT E KSG+ Q + Q L + GLM IP + +
Sbjct: 123 PLNVLLQINTSGEASKSGLDFEQVAELANQVAQMPNLVLRGLMSIPEQADDYESQLAAFR 182
Query: 179 EIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A+ +L LSMGM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 183 SLAQALEQLKPLHPQLDTLSMGMSGDMDAAIAAGSTIVRIGTAIFGARNY 232
>gi|317486346|ref|ZP_07945176.1| alanine racemase domain-containing protein [Bilophila wadsworthia
3_1_6]
gi|316922416|gb|EFV43672.1| alanine racemase domain-containing protein [Bilophila wadsworthia
3_1_6]
Length = 236
Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats.
Identities = 79/230 (34%), Positives = 120/230 (52%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+LG +L+ + ++ +A +A R + V L+AVSK+ + I A GQ +F EN +QEA
Sbjct: 8 ALGERLEAVRGRLAGAARIAGRKPEDVRLIAVSKLHPVEAILAAYGFGQRVFGENYVQEA 67
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L DV+ IG +Q+NK ++ F +I TV K A L+ + +
Sbjct: 68 LAKQEALPD-LDVEWHCIGHVQTNKAKDVTGRFALIHTVDNLKFAETLARRLPEDIPVQR 126
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
V +QVN G E QK+G+ + +L V GLMC+PP + +P+F L
Sbjct: 127 VLLQVNIGNEPQKAGVDEHDLPALAEAVLALPRLEVRGLMCLPPFFDDGEAARPYFARLR 186
Query: 179 EIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
E+ + KL +LSMGM+ D A+ GAT VR+G+ IFG RP ++
Sbjct: 187 ELRDDLEARLGIKLPELSMGMSGDCVQAVEEGATLVRVGTDIFGPRPVKS 236
>gi|207858361|ref|YP_002245012.1| hypothetical protein SEN2943 [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|206710164|emb|CAR34520.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
Length = 234
Score = 289 bits (741), Expect = 2e-76, Method: Composition-based stats.
Identities = 76/229 (33%), Positives = 108/229 (47%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAYIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP + F + +
Sbjct: 123 LNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPAPESDYVRQFEVARQ 182
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|194466523|ref|ZP_03072510.1| alanine racemase domain protein [Lactobacillus reuteri 100-23]
gi|194453559|gb|EDX42456.1| alanine racemase domain protein [Lactobacillus reuteri 100-23]
Length = 235
Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats.
Identities = 74/234 (31%), Positives = 108/234 (46%), Gaps = 14/234 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ +K + ++KI + + R V L+ VSK + I G F EN +QE
Sbjct: 1 MTIVDKAKEVQEKIIAACKRSGRDPQDVQLLPVSKNHPAAGIAELYKAGWNNFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK L D+ IG LQ NKV I +I++V K + + E K R +
Sbjct: 61 LAKKHDELPA--DINWYMIGHLQRNKVKYIADYVTMIQSVDSLKLMNTIEKEGRKHDRII 118
Query: 121 PVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
P+ I+VN G E K G+ P + Q + + GLM P +P +P F
Sbjct: 119 PILIEVNVGEEESKFGVKPTLQDCMELAEASLQLPHVKLRGLMTSAPYYDDPEKTRPIFR 178
Query: 176 LLSEIA-------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L E+ + KL LSMGMT D+E+A+ G+T VR+G+ IFG R
Sbjct: 179 RLRELRDKMNKQNDQLKLDVLSMGMTHDYEIAVEEGSTCVRVGTAIFGPRDYSN 232
>gi|222087921|ref|YP_002546459.1| hypothetical protein Arad_4934 [Agrobacterium radiobacter K84]
gi|221725369|gb|ACM28525.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 219
Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats.
Identities = 114/219 (52%), Positives = 153/219 (69%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + I + A RP +V LVAVSK D+ IR A+S GQ +F EN++QE
Sbjct: 1 MELQERLNEVRSHIAVAERQAGRPGGAVQLVAVSKTFDADAIRPAISAGQRVFGENRVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E D++L IG LQSNK ++ V+LFDVIETV REK A L+ E+ +Q +
Sbjct: 61 SQGKWPALKAETPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALADEIKRQGKA 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ +Y+QVNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 IRLYVQVNTGLEPQKAGIAPDDTVAFVDLCRNELGLSIEGLMCIPPADENPGPHFGLLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR+ + KLSMGM+ D+E+A+A GATSVR+GS IFG R
Sbjct: 181 LARKAGVDKLSMGMSSDYEIAVAFGATSVRVGSAIFGAR 219
>gi|197334451|ref|YP_002155186.1| pyridoxal phosphate enzyme, YggS family [Vibrio fischeri MJ11]
gi|197315941|gb|ACH65388.1| pyridoxal phosphate enzyme, YggS family [Vibrio fischeri MJ11]
Length = 236
Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats.
Identities = 77/232 (33%), Positives = 112/232 (48%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + +IENS R DSV L+AVSK + + A+ GQ IF EN +QE
Sbjct: 3 SIKQNINQITHQIENSIQKCGRNPDSVQLLAVSKTKPIELLEQAIEAGQCIFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K +K+ ++ FIG +QSNK I FD + +V R K A L+ + +
Sbjct: 63 IEKVQYFQKQHPTTSLEWHFIGPIQSNKTRPIAEHFDWVHSVERLKIAQRLNEQRPSELG 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG + + + L + GLM IP + N
Sbjct: 123 ELNVLIQVNTSSEESKSGTTAEEVMELAAAINKMPNLTLRGLMSIPANVSNYAEQLAAFK 182
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ A+ ++ LSMGM+ D + AI +G+T VRIG+ IFG R +
Sbjct: 183 QLTSIQNQLRAQYPQVDTLSMGMSGDMDAAIEAGSTMVRIGTAIFGARDYKN 234
>gi|315293935|gb|EFU53287.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 153-1]
Length = 234
Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats.
Identities = 71/230 (30%), Positives = 108/230 (46%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAEAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIHHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T RIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMGRIGTAIFGARDYS 232
>gi|292493756|ref|YP_003529195.1| alanine racemase domain protein [Nitrosococcus halophilus Nc4]
gi|291582351|gb|ADE16808.1| alanine racemase domain protein [Nitrosococcus halophilus Nc4]
Length = 231
Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats.
Identities = 84/230 (36%), Positives = 122/230 (53%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + +L + +I + RP SV+LVA +K IR A++CGQ F EN LQ
Sbjct: 1 MTQIAQQLAQVQTRIAEAEQRFGRPAGSVTLVAATKTCSVSAIRAAIACGQRAFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L E +++ FIG +QSNK +I + FD + +V R K A L+ + +
Sbjct: 61 EALPKIKELESE-NLEWHFIGPIQSNKTRDIAAHFDWVHSVDRLKVAQRLNQQRPPELPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V +QVN E KSG P + + + +L++ GLM +PP + + F
Sbjct: 120 LNVCLQVNISGEDSKSGTTPEELTELAKAVAEMPRLSLRGLMTLPPLNSDFEAQRQPFRA 179
Query: 177 LSEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L ++ +E KL LS+GMT D E AIA GAT VR+G+ IFG RP +
Sbjct: 180 LHQLWQELRQGGLKLDTLSIGMTDDLEAAIAEGATLVRVGAAIFGRRPPK 229
>gi|71909495|ref|YP_287082.1| hypothetical protein Daro_3884 [Dechloromonas aromatica RCB]
gi|71849116|gb|AAZ48612.1| Protein of unknown function UPF0001 [Dechloromonas aromatica RCB]
Length = 229
Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats.
Identities = 83/229 (36%), Positives = 107/229 (46%), Gaps = 10/229 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + LQ +I +A A R D+V L+AVSK + A GQ F EN +Q
Sbjct: 1 MSAIADNLQAVHSRIALAAAAAGRSPDTVRLLAVSKTWPLSCVLDAADAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K + +++ FIG LQSNK + FD + ++ R K A LS +
Sbjct: 61 EGIDKIAAISGR-NLEWHFIGPLQSNKSRPVAERFDWVHSIERLKIAERLSAQRPAYLPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V IQVN E KSG P++ L + GLM IP + F
Sbjct: 120 LQVCIQVNVSGEASKSGCAPDEAPALCKSIAALPGLRLRGLMAIPEPTDDLDAQRLPFRQ 179
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L EI + L LSMGM+ D E AIA GAT VRIG+ IFGER
Sbjct: 180 LREIYEHIRASGLPLDTLSMGMSHDLEAAIAEGATIVRIGTAIFGERNY 228
>gi|262172425|ref|ZP_06040103.1| hypothetical protein VII_003254 [Vibrio mimicus MB-451]
gi|261893501|gb|EEY39487.1| hypothetical protein VII_003254 [Vibrio mimicus MB-451]
Length = 236
Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats.
Identities = 82/231 (35%), Positives = 114/231 (49%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFY 175
L V IQVNT E KSGI P Q L + L + GLM IP + + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQRAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ R+ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQRQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|311278132|ref|YP_003940363.1| alanine racemase domain-containing protein [Enterobacter cloacae
SCF1]
gi|308747327|gb|ADO47079.1| alanine racemase domain protein [Enterobacter cloacae SCF1]
Length = 239
Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats.
Identities = 77/229 (33%), Positives = 106/229 (46%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + A++ GQ F EN +QE
Sbjct: 8 DIAHNLAQVRDKISAAAAQCGRAPEEVTLLAVSKTKPVSAVEEAIAAGQRAFGENYVQEG 67
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K ++ +Q FIG LQSNK + FD TV R + AS LS +
Sbjct: 68 VEKIRHFQQAGATGLQWHFIGPLQSNKSRLVAEHFDWCHTVDRLRIASRLSEQRPADMAP 127
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQVN E KSGI P + L + GLM IP F +
Sbjct: 128 LNVLIQVNISDEDSKSGIPPEAVDELAAEVAALPGLVLRGLMAIPAPESEYVRQFAVAQR 187
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ A+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 188 MAVAFGRLKAQYATVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 236
>gi|330872136|gb|EGH06285.1| hypothetical protein Pgy4_01140 [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 228
Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats.
Identities = 78/224 (34%), Positives = 107/224 (47%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAANREPASVGLLAVSKTKPAGDLREAYTAGLRNFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L + FIG +QSNK I F + +V R K A LS + + L
Sbjct: 63 LGKQLELSDLP-LCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEALEPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
+ IQVN E KSG P +L + GLM IP +P F +
Sbjct: 122 ICIQVNVSGEASKSGCTPQDLPTLAAAIIALPRLKLRGLMAIPEPTDDPAAQHASFAAVR 181
Query: 179 EIARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 TLQEQLNLGLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|298485009|ref|ZP_07003106.1| predicted pyridoxal phosphate-dependent enzyme [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|298160419|gb|EFI01443.1| predicted pyridoxal phosphate-dependent enzyme [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 228
Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats.
Identities = 78/224 (34%), Positives = 108/224 (48%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAANREPASVGLLAVSKTKPAGDLREAYTAGLRNFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L + FIG +QSNK I F + +V R K A LS + + L
Sbjct: 63 LGKQLELSDLP-LCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEALEPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
+ IQVN E KSG P + +L + GLM IP +P F +
Sbjct: 122 ICIQVNVSGEASKSGCTPQDLPELAAAIIALPRLKLRGLMAIPEPTDDPAAQHASFAAVR 181
Query: 179 EIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 TLQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|213971473|ref|ZP_03399585.1| conserved hypothetical protein TIGR00044 [Pseudomonas syringae pv.
tomato T1]
gi|301383500|ref|ZP_07231918.1| hypothetical protein PsyrptM_12746 [Pseudomonas syringae pv. tomato
Max13]
gi|302062924|ref|ZP_07254465.1| hypothetical protein PsyrptK_23299 [Pseudomonas syringae pv. tomato
K40]
gi|302134692|ref|ZP_07260682.1| hypothetical protein PsyrptN_25079 [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213923755|gb|EEB57338.1| conserved hypothetical protein TIGR00044 [Pseudomonas syringae pv.
tomato T1]
Length = 228
Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats.
Identities = 79/224 (35%), Positives = 108/224 (48%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ AKR SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAAKRDPASVGLLAVSKTKPASDLREAYTAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L + FIG +QSNK I F + +V R K A LS + + L
Sbjct: 63 LGKQLELADLP-LCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEGLEPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+ IQVN E KSG P +L + GLM IP +P F +
Sbjct: 122 ICIQVNVSGEASKSGCAPQDLPALAAAINALPRLKLRGLMAIPEPTDDPAAQAASFAAVR 181
Query: 179 EIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 TLQEQLNLSLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|238924096|ref|YP_002937612.1| hypothetical protein EUBREC_1734 [Eubacterium rectale ATCC 33656]
gi|238875771|gb|ACR75478.1| hypothetical protein EUBREC_1734 [Eubacterium rectale ATCC 33656]
Length = 247
Score = 288 bits (739), Expect = 3e-76, Method: Composition-based stats.
Identities = 70/231 (30%), Positives = 108/231 (46%), Gaps = 13/231 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L +Q I+ + A R V+L+AVSK + + G F ENK+QE
Sbjct: 17 LKDNLHQVQQNIKAACDRAHRNYSDVTLIAVSKTKPVEMLSEIYDEGIREFGENKVQEMC 76
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + K D+ IG LQ+NKV IV +I +V A + + IK +
Sbjct: 77 EKMEVMPK--DIHWHMIGHLQTNKVKYIVGKTSLIHSVDSLHLAKEIQKQAIKHDCSCDI 134
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN E K G ++ V + ++++GLM I P + +P+ + +I +
Sbjct: 135 LVEVNIAGEESKFGTSQDEAISLVEEIAKLDHIHIKGLMTIAPFVDDPEDNRQYFRDIKQ 194
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ LSMGMT D+ +AI GAT VR+G+GIFGER
Sbjct: 195 LSVDIAQKNIDNVSMNVLSMGMTGDYTVAIEEGATMVRVGTGIFGERDYSN 245
>gi|325294730|ref|YP_004281244.1| hypothetical protein Dester_0534 [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065178|gb|ADY73185.1| protein of unknown function UPF0001 [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 228
Score = 288 bits (739), Expect = 3e-76, Method: Composition-based stats.
Identities = 82/229 (35%), Positives = 125/229 (54%), Gaps = 10/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ K++IE + AKR D V ++A SK ++IR A G +F EN++QE
Sbjct: 1 MGIRENVKRIKERIEKACERAKRNPDEVFILAASKTRAPEEIRKAFEAGIKLFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++K PL + ++ IG LQ NKV V+LF VIE+V ++ A L + K + L
Sbjct: 61 AREKI-PLLSDIPIEWHMIGHLQKNKVKYAVNLFKVIESVDSKELADELEKRLSKIGKKL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
V+I+V E K G PN+ ++ + L+++GLM +PP + +P+F L
Sbjct: 120 EVFIEVKLSPEETKHGCSPNEVEELARYVLELKHLDLKGLMTVPPYFEDVELVRPYFRRL 179
Query: 178 SEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+I K+ LSMGM+ DFE+A+ GAT VRIG+ IFG R
Sbjct: 180 RKIRDRLEDSLGMKIPHLSMGMSHDFEVAVEEGATIVRIGTAIFGPRNY 228
>gi|254508623|ref|ZP_05120739.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
16]
gi|219548474|gb|EED25483.1| pyridoxal phosphate enzyme, YggS family [Vibrio parahaemolyticus
16]
Length = 237
Score = 288 bits (739), Expect = 3e-76, Method: Composition-based stats.
Identities = 79/233 (33%), Positives = 110/233 (47%), Gaps = 13/233 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ RP++SV L+AVSK I A GQV F EN +QE
Sbjct: 3 SIQQNIEQITSQIESAQQKCGRPRESVQLLAVSKTKPVDAILEAAHAGQVAFGENYVQEG 62
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + E ++ FIG +QSNK + F + TV R K A L+ +
Sbjct: 63 ADKVAYFNEHHPELALEWHFIGPIQSNKSRHVAENFAWVHTVDRAKIAQRLNDQRPAGMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V +QVNT E KSG+ N+ L L + GLM IP + + F
Sbjct: 123 PLQVLMQVNTSGEASKSGLNENEIFALAELISSLPNLTLRGLMSIPANVSDYASQLSAFK 182
Query: 176 LLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ +L LSMGM+ D E AI +G+T VRIG+ IFG R
Sbjct: 183 QLAELKDALVKRFPDEQLDTLSMGMSGDMEAAIEAGSTMVRIGTAIFGARDYS 235
>gi|283479693|emb|CAY75609.1| UPF0001 protein yggS [Erwinia pyrifoliae DSM 12163]
Length = 266
Score = 288 bits (739), Expect = 3e-76, Method: Composition-based stats.
Identities = 77/226 (34%), Positives = 108/226 (47%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +Q+I +A R ++L+AVSK + I A++ GQ F EN +QE
Sbjct: 32 SIKHNLQQVRQRISAAAAKCGRASQEITLLAVSKTKTASAIEEAVAAGQCCFGENYVQEG 91
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + FIG LQSNK + FD TV R + AS LS + L
Sbjct: 92 VDKI-QLLANPSLVWHFIGPLQSNKSRLVAEHFDWCHTVDRLRIASRLSQQRPDTLAPLN 150
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQ+N E KSGIM + + +L + GLM IP N + ++A
Sbjct: 151 VLIQINISAEPSKSGIMLAELPALALQIAALPRLKLRGLMAIPAPQDNYDSQLAVCQQMA 210
Query: 182 --------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 211 TAFEHLQQDYPGVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGARD 256
>gi|163781970|ref|ZP_02176969.1| hypothetical protein HG1285_17594 [Hydrogenivirga sp. 128-5-R1-1]
gi|159882502|gb|EDP76007.1| hypothetical protein HG1285_17594 [Hydrogenivirga sp. 128-5-R1-1]
Length = 227
Score = 288 bits (739), Expect = 3e-76, Method: Composition-based stats.
Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ ++ IE + + R V L+ SK V ++I+ CG F EN++QE
Sbjct: 1 MTACGNLQHVRELIEKACARSGRSPAEVILLGASKTVPPERIKEFYECGLKTFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ LR D+ FIG LQ+NKV ++ +I +V R+ A + +
Sbjct: 61 FTTKYEALR-RLDIDWHFIGRLQTNKVKYLMGKVSLIHSVDRKSLADEIEKRAQRAGLIQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V ++VN G E K G+ P + + + L VEGLM IPP +P +P F L
Sbjct: 120 RVLLEVNVGGEETKGGVAPGELPELFSYVKGLPSLKVEGLMTIPPYREDPEEVRPFFSEL 179
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ R + L LSMGM+ DFE+AI GAT VR+G+ +FGER
Sbjct: 180 RELKRRLEEEFGTTLKHLSMGMSHDFEVAIEEGATIVRVGTLLFGER 226
>gi|154504399|ref|ZP_02041137.1| hypothetical protein RUMGNA_01903 [Ruminococcus gnavus ATCC 29149]
gi|153795328|gb|EDN77748.1| hypothetical protein RUMGNA_01903 [Ruminococcus gnavus ATCC 29149]
Length = 230
Score = 288 bits (739), Expect = 3e-76, Method: Composition-based stats.
Identities = 77/230 (33%), Positives = 121/230 (52%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ +++I+ + A R ++ V+L+AVSK I G ++ ENK+QE
Sbjct: 2 LKEQLKEVERRIQAACDRAGRKREEVTLIAVSKTKPVSMIEETYQLGIHVYGENKVQELT 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ L K D++ IG LQ+NKV IV +I +V K A + E K++ +
Sbjct: 62 EKYEILPK--DIEWHMIGHLQTNKVKYIVGKTALIHSVDSLKLAETIEKEAAKKNCIQDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
++VN E K G+ ++ F+ Q + V+GLM I P + NP +P F L +
Sbjct: 120 LVEVNVAQEESKFGLKVDEVIPFIEKISQFQHICVKGLMTIAPFVENPDDNRPVFANLHK 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ ++ LSMGMT D+E+AI GAT VR+G+GIFG R Q
Sbjct: 180 LSVDIMNKNIDNVNVSILSMGMTNDYEVAIEEGATMVRVGTGIFGARNYQ 229
>gi|291279388|ref|YP_003496223.1| hypothetical protein DEFDS_0997 [Deferribacter desulfuricans SSM1]
gi|290754090|dbj|BAI80467.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 228
Score = 288 bits (739), Expect = 3e-76, Method: Composition-based stats.
Identities = 86/226 (38%), Positives = 128/226 (56%), Gaps = 10/226 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L++ ++IE +AI + R KD + LVAVSK ++KI A +CGQ +F EN++QEA
Sbjct: 2 ICKNLEIIMERIEKAAIKSGRAKDDIVLVAVSKTFPAEKIVEAYNCGQRVFGENRVQEAL 61
Query: 63 KKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KK LR ++ D++ IG LQ+NKV + + F +I +V R + A L++ K
Sbjct: 62 KKIEGLRDKFEDIEFHMIGHLQTNKVRYLKNNFSLIHSVDRIELAELINKYAKKNGLTQD 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+ IQVN E QKSG++ V L ++GLM IPP + + +P F ++
Sbjct: 122 ILIQVNIAEEPQKSGVLLKDYDRLVEFVLNCDNLKLKGLMMIPPLVDDAEVNRPFFAKMN 181
Query: 179 EIA------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ ++ LSMGM+ DFE+AI GA VRIGS IFG+R
Sbjct: 182 ELFLKTNDRYNIQMDYLSMGMSDDFEIAIEEGANMVRIGSAIFGKR 227
>gi|33326392|gb|AAQ08613.1| hypothetical protein [Agrobacterium vitis]
Length = 219
Score = 288 bits (739), Expect = 3e-76, Method: Composition-based stats.
Identities = 118/219 (53%), Positives = 155/219 (70%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ +L + +I +A A R ++V+LVAVSK D+ IR + GQ +F EN++QE
Sbjct: 1 MTIEERLDEVRTRIAAAAEDADRNPEAVTLVAVSKTFDADAIRPVILHGQRVFGENRVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E ++L IG LQSNK SE V+LFDVIETV REK A L+ EM KQ R
Sbjct: 61 SQGKWPELKAETPGIELYLIGPLQSNKASEAVALFDVIETVDREKIARALAEEMAKQGRL 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L +Y+QVNTG E QK+GI P +TK FV+LCR + L +EGLMCIPPA NP PHF LL++
Sbjct: 121 LRLYVQVNTGLEPQKAGIAPQETKAFVVLCRSELGLEIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A EC +++LSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LAGECGVSRLSMGMSGDYETAIAFGATSVRVGSAIFGHR 219
>gi|156975833|ref|YP_001446740.1| hypothetical protein VIBHAR_03578 [Vibrio harveyi ATCC BAA-1116]
gi|156527427|gb|ABU72513.1| hypothetical protein VIBHAR_03578 [Vibrio harveyi ATCC BAA-1116]
Length = 236
Score = 288 bits (739), Expect = 3e-76, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 110/231 (47%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +I + R +SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITSQIRHDEQKCGRSPESVQLLAVSKTKPVEAILEAYQAGQEAFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + ++ FIG +QSNK + FD + T+ R K A L+ + + +
Sbjct: 63 VGKVQHFAEHYPDNRIEWHFIGPIQSNKSRPVAEHFDWVHTIDRAKIAQRLNDQRPSELK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L IQVNT E KSG+ + + L + L + GLM IP + + + F
Sbjct: 123 PLQALIQVNTSGEESKSGVADAEIFELAELISRLPNLTLRGLMSIPANVPDYESQLRAFK 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L E+ ++ + LSMGM+ D + AI +G+T VRIG+ IFG R
Sbjct: 183 QLEELKQKLAQQYPDVDTLSMGMSGDMDAAIEAGSTMVRIGTAIFGARDYS 233
>gi|239832888|ref|ZP_04681217.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
gi|239825155|gb|EEQ96723.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301]
Length = 250
Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats.
Identities = 115/224 (51%), Positives = 152/224 (67%), Gaps = 2/224 (0%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K I ++ A+R K SV+LVAVSK D+ +IR L GQ +F EN++Q
Sbjct: 25 MSDIVANLNTVKAAIASAEKEARREKGSVTLVAVSKTFDADEIRPVLDAGQRVFGENRVQ 84
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW LR ++ ++L IG LQSNK ++ V+LFDVIETV REK A+ L+ E+ KQ++
Sbjct: 85 EAQGKWPQLRGDYSGIELHLIGPLQSNKAADAVALFDVIETVDREKIAAALAAEIKKQNK 144
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL
Sbjct: 145 TPKLYVQVNTGLEEQKAGIAPKEAVAFVERCRKEHGLAIEGLMCIPPAGENPGPHFALLE 204
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ARE + KLSMGM+ D+E AI GATSVR+GS IFG R
Sbjct: 205 KLAREAGVEKLSMGMSGDYETAIGFGATSVRVGSAIFGGRSYAN 248
>gi|254230227|ref|ZP_04923619.1| conserved hypothetical protein [Vibrio sp. Ex25]
gi|262393230|ref|YP_003285084.1| hypothetical protein VEA_002457 [Vibrio sp. Ex25]
gi|151937259|gb|EDN56125.1| conserved hypothetical protein [Vibrio sp. Ex25]
gi|262336824|gb|ACY50619.1| hypothetical protein VEA_002457 [Vibrio sp. Ex25]
Length = 233
Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 109/231 (47%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +I R +SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITSQIRYDEQKFGRTPESVQLLAVSKTKPVEAILEAHQAGQTAFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + ++ FIG +QSNK + FD + T+ R K A L+ + + +
Sbjct: 63 VSKVQHFAEHYPDNRIEWHFIGPIQSNKSRLVAEHFDWVHTIDRTKIAQRLNDQRPSELK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFY 175
L V IQVNT E KSG+ + + L + L + GLM IP + + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGVTEAEVFELAELISRLPNLTLRGLMSIPANVSDYESQLHEFQ 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+ + + ++ LSMGM+ D AI +G+T VRIG+ IFG R
Sbjct: 183 KLATLKQTLEAQFPEIDTLSMGMSGDMTAAIEAGSTMVRIGTAIFGARDYS 233
>gi|116254455|ref|YP_770293.1| racemase [Rhizobium leguminosarum bv. viciae 3841]
gi|115259103|emb|CAK10214.1| putative racemase [Rhizobium leguminosarum bv. viciae 3841]
Length = 219
Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats.
Identities = 116/219 (52%), Positives = 152/219 (69%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I A RP SV LVAVSK ++ IR A+ GQ +F EN++QE
Sbjct: 1 MELQERLNDVRSRIAAGERAAGRPAGSVQLVAVSKTFEADAIRPAIEAGQRVFGENRVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E D++L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q++
Sbjct: 61 SQGKWPALKAEHQDIKLHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQAKA 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L +Y+QVNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 LRLYVQVNTGLEPQKAGIAPDDTPAFVALCRDELGLSIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LALKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGTR 219
>gi|291528980|emb|CBK94566.1| pyridoxal phosphate enzyme, YggS family [Eubacterium rectale
M104/1]
Length = 232
Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats.
Identities = 70/230 (30%), Positives = 108/230 (46%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L +Q I+ + A R V+L+AVSK + + G F ENK+QE
Sbjct: 2 LKDNLHQVQQNIKAACDRAHRSYSDVTLIAVSKTKPVEMLSEIYDEGIREFGENKVQEMC 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + K D+ IG LQ+NKV IV +I +V A + + IK +
Sbjct: 62 EKMEVMPK--DIHWHMIGHLQTNKVKYIVGKTSLIHSVDSLHLAKEIQKQAIKHDCSCDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN E K G ++ V + ++++GLM I P + +P+ + +I +
Sbjct: 120 LVEVNIAGETSKFGTSRDEAISLVEEIAKLDHIHIKGLMTIAPFVDDPEDNRQYFRDIKQ 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGMT D+ +AI GAT VR+G+GIFGER
Sbjct: 180 LSVDIAQKNIDNVSMNVLSMGMTGDYTVAIEEGATMVRVGTGIFGERDYS 229
>gi|255280917|ref|ZP_05345472.1| pyridoxal phosphate enzyme, YggS family [Bryantella formatexigens
DSM 14469]
gi|255268365|gb|EET61570.1| pyridoxal phosphate enzyme, YggS family [Bryantella formatexigens
DSM 14469]
Length = 229
Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats.
Identities = 80/230 (34%), Positives = 116/230 (50%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I+ + A R V+L+AVSK I L G + F ENK QE K
Sbjct: 2 VTENYRYVRGRIDEACRRAGRDPREVTLIAVSKTKPVSMIEELLPEGVLDFGENKPQELK 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ L K +++ IG LQ NKV ++S +I +V + A + E K +PV
Sbjct: 62 EKYEVLPK--NLRFHMIGHLQRNKVKYVISRACMIHSVDSLRLAETIQEEAAKHQLIMPV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
++VN E K G+ +T DFV + L V+GLM I P + NP+ HF L
Sbjct: 120 LVEVNIAQEESKFGLSAAETPDFVRELSRFPNLCVKGLMTIAPFVENPEDNRVHFRNLYN 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + LSMGMT D+E+A+ GAT VR+G+GIFGER Q
Sbjct: 180 LFIDIKARNIDNVDMCILSMGMTNDYEVAVEEGATHVRVGTGIFGERNYQ 229
>gi|296104615|ref|YP_003614761.1| alanine racemase family protein [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295059074|gb|ADF63812.1| alanine racemase family protein [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 233
Score = 288 bits (737), Expect = 4e-76, Method: Composition-based stats.
Identities = 74/229 (32%), Positives = 114/229 (49%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 NIAHNLAQVRDKISAAATRCGRASEEITLLAVSKTKPASAIAEAIDAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEWD--VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K +++ + +Q FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRYFQEQGNTGLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAEMPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI ++ +L + GLM IP + + F + +
Sbjct: 123 LNVLIQINISDENSKSGIALSELDALAAEVAALPRLTLRGLMAIPAPESSYERQFAVAQQ 182
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ AR K+ LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFEALKARYEKIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|237749379|ref|ZP_04579859.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
gi|229380741|gb|EEO30832.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
Length = 236
Score = 288 bits (737), Expect = 4e-76, Method: Composition-based stats.
Identities = 83/232 (35%), Positives = 115/232 (49%), Gaps = 12/232 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + N LQ + IE +A A R +V L+AVSK + I A GQ+ F EN Q
Sbjct: 1 MTDITNHLQTITKNIEAAASKANRGPHTVHLLAVSKTRPPEDILEAAEAGQLAFGENYEQ 60
Query: 60 EAKKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
EA K +R+ + ++ FIG +QSNK I FD + +V REK A LS + +
Sbjct: 61 EAVSKIESIRQSRPDLKLEWHFIGPIQSNKTRSIAEHFDWVHSVDREKIARRLSEQRPEN 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPH 173
L V +QVN E KSG++P + L + GLM IP +P +
Sbjct: 121 LPPLNVCLQVNISKEKTKSGVLPEEVSVLAKAVSAMPNLRLRGLMAIPEPESDPVKQREP 180
Query: 174 FYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F + + + L LSMGM+ D E AI GAT+VRIG+ IFG+R
Sbjct: 181 FSAMKTLFDQLVQSGYDLDTLSMGMSDDMETAIQEGATTVRIGTAIFGKRSY 232
>gi|260222645|emb|CBA32411.1| UPF0001 protein PA0394 [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 250
Score = 288 bits (737), Expect = 5e-76, Method: Composition-based stats.
Identities = 80/233 (34%), Positives = 109/233 (46%), Gaps = 18/233 (7%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L Q+I + + RP DSV L+AVSK ++ A GQ F EN +Q
Sbjct: 19 MTMIADNLHAVAQRIAQACTQSGRPADSVRLLAVSKTFGPDAVQQAFDAGQRAFGENYIQ 78
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L ++ IG +QSNK + F ++TV R K A LS +
Sbjct: 79 EAVDKISALSALP-IEWHCIGPIQSNKTRLVAEHFQWVQTVDRLKIAQRLSDQRPPHLPP 137
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQVN KSG+ P + Q +L + G+MCIP P P F
Sbjct: 138 LQVCIQVNVDGGPTKSGVTPQDAVALALEVAQLPRLQLRGIMCIP----EPAPDFVAARA 193
Query: 180 ------------IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A+ L LSMGM+ D + A+A G+T VR+GS IFG RP
Sbjct: 194 VFMSAKAVFDAVVAQGLPLDTLSMGMSGDLDAAVAGGSTMVRVGSAIFGARPT 246
>gi|225849671|ref|YP_002729905.1| pyridoxal phosphate enzyme, YggS family [Persephonella marina
EX-H1]
gi|225646566|gb|ACO04752.1| pyridoxal phosphate enzyme, YggS family [Persephonella marina
EX-H1]
Length = 228
Score = 288 bits (737), Expect = 5e-76, Method: Composition-based stats.
Identities = 80/227 (35%), Positives = 118/227 (51%), Gaps = 9/227 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++ I SA + R + + L+A SK +KI+ A G F EN++QE
Sbjct: 1 MSIRENVERIREIIYRSAERSGRDPEEIILLAASKTQPVEKIKEAYEAGVRYFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK L++ D+ IG LQ+NK V F++I ++ RE A L K +
Sbjct: 61 GIKKIEQLKEIRDIHWHLIGGLQTNKAKYAVRYFELIHSLDRESLADELDKRARKIGKKQ 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
V I+VN G E K G+ P + +K + + GLMCIPP + +P+F L
Sbjct: 121 DVLIEVNIGEEETKYGVKPENLEKLFEYSIKKENIRILGLMCIPPYFEDKERSRPYFVRL 180
Query: 178 SEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + KL LSMGM+ DF++A+ GAT VRIG+ IFGER
Sbjct: 181 REMKEKLERDFGVKLPHLSMGMSHDFDVAVEEGATIVRIGTAIFGER 227
>gi|322613497|gb|EFY10438.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322621089|gb|EFY17947.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322624153|gb|EFY20987.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322628108|gb|EFY24897.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322633227|gb|EFY29969.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322636195|gb|EFY32903.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322639533|gb|EFY36221.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|322647534|gb|EFY44023.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322648718|gb|EFY45165.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|322653773|gb|EFY50099.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322657879|gb|EFY54147.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|322663982|gb|EFY60181.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322669007|gb|EFY65158.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322672999|gb|EFY69106.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|322678010|gb|EFY74073.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|322681186|gb|EFY77219.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|322687884|gb|EFY83851.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|323194920|gb|EFZ80107.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323199624|gb|EFZ84714.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323202629|gb|EFZ87669.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|323207884|gb|EFZ92830.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|323212564|gb|EFZ97381.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|323214953|gb|EFZ99701.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323222683|gb|EGA07048.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323225426|gb|EGA09658.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323230559|gb|EGA14677.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323235090|gb|EGA19176.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323239129|gb|EGA23179.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|323244513|gb|EGA28519.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323247128|gb|EGA31094.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323253389|gb|EGA37218.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323256304|gb|EGA40040.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323262520|gb|EGA46076.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323267384|gb|EGA50868.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323269212|gb|EGA52667.1| pyridoxal phosphate enzyme, YggS family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
Length = 234
Score = 288 bits (737), Expect = 5e-76, Method: Composition-based stats.
Identities = 76/229 (33%), Positives = 108/229 (47%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP + F + +
Sbjct: 123 LNVLIQINISDENSKSGIPLAKLDELAAAVATLPRLRLRGLMAIPAPESDYVRQFEVARQ 182
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|268317716|ref|YP_003291435.1| alanine racemase domain-containing protein [Rhodothermus marinus
DSM 4252]
gi|262335250|gb|ACY49047.1| alanine racemase domain protein [Rhodothermus marinus DSM 4252]
Length = 244
Score = 288 bits (737), Expect = 5e-76, Method: Composition-based stats.
Identities = 73/231 (31%), Positives = 111/231 (48%), Gaps = 14/231 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L +++IE + A R D V+L+ V+K ++ A G F EN++QE
Sbjct: 11 AIRERLAWIQERIERACRRAGRSPDEVTLIGVTKTFPVAVVQAAYEAGLRHFGENRVQEL 70
Query: 62 KKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K L + +V IG LQ NK ++V+ D + ++ + A L R
Sbjct: 71 VAKAAVLPGRIEGGEVTWHMIGHLQRNKARDVVAHADWLHSLDNLRLAETLERRAAMADR 130
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
LP +++VN E K G+ P+ DF+ L + GLM + +P +P F
Sbjct: 131 VLPCFVEVNVSGEPTKFGLEPDAVHDFLDALAPFEHLEIVGLMTLAAPAEDPEAVRPQFR 190
Query: 176 LLSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL +A +L LSMGM+ DFE+AI GAT VRIGS +FG R
Sbjct: 191 LLRRLAETYDRRNNPRVQLRYLSMGMSGDFEVAIEEGATHVRIGSALFGPR 241
>gi|254501830|ref|ZP_05113981.1| conserved hypothetical protein TIGR00044 [Labrenzia alexandrii
DFL-11]
gi|222437901|gb|EEE44580.1| conserved hypothetical protein TIGR00044 [Labrenzia alexandrii
DFL-11]
Length = 223
Score = 288 bits (737), Expect = 5e-76, Method: Composition-based stats.
Identities = 103/219 (47%), Positives = 134/219 (61%), Gaps = 1/219 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++L I + RP+ +V+L+AVSK ++ IR AL G +F EN++QEA
Sbjct: 4 VADQLSNVLSDIRKAEAEYGRPEGAVTLIAVSKTFEADAIRPALEAGHRVFGENRVQEAM 63
Query: 63 KKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW LR +D ++L IG LQSNK E V+ FDVI TV R+K A L EM KQ R LP
Sbjct: 64 GKWPELRGSYDGIELHLIGPLQSNKAKEAVATFDVIHTVDRQKIAKALKAEMDKQGRDLP 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+IQVNTG E QK+GI P + FV C+ LN+ GLMCIPP P HF LL +IA
Sbjct: 124 CFIQVNTGEEPQKAGIPPKEVDQFVKECKDTVGLNIVGLMCIPPVDEAPGEHFALLQKIA 183
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+++SMGM+ D+E A+ GAT VR+GS IFG R
Sbjct: 184 ARNGLSQISMGMSSDYETAVGFGATHVRVGSAIFGSRDY 222
>gi|83309121|ref|YP_419385.1| TIM-barrel fold family protein [Magnetospirillum magneticum AMB-1]
gi|82943962|dbj|BAE48826.1| Predicted enzyme with a TIM-barrel fold [Magnetospirillum
magneticum AMB-1]
Length = 216
Score = 288 bits (737), Expect = 5e-76, Method: Composition-based stats.
Identities = 108/220 (49%), Positives = 145/220 (65%), Gaps = 7/220 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L+ + +I +A RP V+LVAVSK ++ IR A++ GQ +F EN++Q
Sbjct: 1 MSAITTGLEAVRSRIAAAAQ--GRP---VTLVAVSKTYPAEAIREAMAAGQRVFGENRVQ 55
Query: 60 EAKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EAK K+ LR E D++L IG LQ+NKV + V+LFDVIETV R K A ++ EM + R
Sbjct: 56 EAKAKFPGLRDEYPDLELHLIGPLQTNKVRDAVALFDVIETVDRPKLARAIADEMQRSGR 115
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
V IQVNTG E QK+GI P + V LCR ++ L + GLMCIPPA +P PHF LL+
Sbjct: 116 RPRVLIQVNTGLEPQKAGIGPGELDAMVALCRDEFGLPLAGLMCIPPADEDPAPHFRLLA 175
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A+ L +SMGM+ DFE+A+A GAT VR+GS IFG R
Sbjct: 176 DMAKRHGLGVVSMGMSGDFEIAVAEGATHVRVGSAIFGHR 215
>gi|291524839|emb|CBK90426.1| pyridoxal phosphate enzyme, YggS family [Eubacterium rectale DSM
17629]
Length = 232
Score = 288 bits (737), Expect = 5e-76, Method: Composition-based stats.
Identities = 70/230 (30%), Positives = 108/230 (46%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L +Q I+ + A R V+L+AVSK + + G F ENK+QE
Sbjct: 2 LKDNLHQVQQNIKAACDRAHRNYSDVTLIAVSKTKPVEMLSEIYDEGIREFGENKVQEMC 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + K D+ IG LQ+NKV IV +I +V A + + IK +
Sbjct: 62 EKMEVMPK--DIHWHMIGHLQTNKVKYIVGKTSLIHSVDSLHLAKEIQKQAIKHDCSCDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN E K G ++ V + ++++GLM I P + +P+ + +I +
Sbjct: 120 LVEVNIAGEASKFGTSRDEAISLVEEIAKLDHIHIKGLMTIAPFVDDPEDNRQYFRDIKQ 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGMT D+ +AI GAT VR+G+GIFGER
Sbjct: 180 LSVDIAQKNIDNVSMNVLSMGMTGDYTVAIEEGATMVRVGTGIFGERDYS 229
>gi|323524799|ref|YP_004226952.1| alanine racemase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323381801|gb|ADX53892.1| alanine racemase domain protein [Burkholderia sp. CCGE1001]
Length = 232
Score = 288 bits (737), Expect = 5e-76, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 110/229 (48%), Gaps = 9/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + L+ +Q+I +A +A R S++L+AVSK ++ +R A + GQ F EN +QEA
Sbjct: 3 DLIHNLEAVQQRIAMAAHVAGRDARSIALLAVSKTFPAEDVRAAHAAGQRAFGENYVQEA 62
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L ++ FIG LQSNK + FD + +V R K A LS + L
Sbjct: 63 LTKIEALADLRASLEWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDALPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---YLL 177
V +QVN E KSG+ ++ +L + GLM IP G L
Sbjct: 123 NVCLQVNISGEASKSGVSVDEAMQVARDIAALPRLRLRGLMAIPEPAGGIDEQRVPHRRL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 183 RELFERLRSDGLALDTLSMGMSSDLEAAVLEGATIVRVGTAIFGARDYS 231
>gi|241206932|ref|YP_002978028.1| alanine racemase [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240860822|gb|ACS58489.1| alanine racemase domain protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 219
Score = 288 bits (737), Expect = 6e-76, Method: Composition-based stats.
Identities = 115/219 (52%), Positives = 149/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I + A RP SV LVAVSK ++ IR A+ GQ +F EN++QE
Sbjct: 1 MELQERLDDVRSRIAAAEREAGRPAGSVQLVAVSKTFEADAIRPAIEAGQRVFGENRVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E D+ L IG LQSNK ++ V LFDVIETV REK A L+ EM +Q +
Sbjct: 61 SQGKWPALKAEHQDIALHLIGPLQSNKAADAVVLFDVIETVDREKIARALAEEMRRQGKA 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L +Y+QVNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 LRLYVQVNTGLEPQKAGIAPDDTPAFVALCRDELGLSIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+ AIA GATSVR+GS IFG R
Sbjct: 181 LALKCGVEKLSMGMSGDYGTAIAFGATSVRVGSAIFGTR 219
>gi|157148501|ref|YP_001455820.1| hypothetical protein CKO_04327 [Citrobacter koseri ATCC BAA-895]
gi|157085706|gb|ABV15384.1| hypothetical protein CKO_04327 [Citrobacter koseri ATCC BAA-895]
Length = 234
Score = 287 bits (736), Expect = 6e-76, Method: Composition-based stats.
Identities = 73/229 (31%), Positives = 109/229 (47%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAHVRDKISAAATRCGRSSEEVTLLAVSKTKPASAIAEAIAVGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K ++ +Q FIG LQSNK + FD T+ R + A+ LS +
Sbjct: 63 VEKIRHFKESGVEGLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIAARLSEQRPTGLPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + + GLM IP + F + +
Sbjct: 123 LNVLIQINISDENSKSGIPLTELDALAASVVELPGIRLRGLMAIPAPESDYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A R + LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPGVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGARDY 231
>gi|52425760|ref|YP_088897.1| hypothetical protein MS1705 [Mannheimia succiniciproducens MBEL55E]
gi|52307812|gb|AAU38312.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 230
Score = 287 bits (736), Expect = 6e-76, Method: Composition-based stats.
Identities = 80/229 (34%), Positives = 108/229 (47%), Gaps = 11/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + N L+ + I + A P +SV L+AVSK + + A GQ F EN +QE
Sbjct: 1 MEIANNLKQIHKNIVSICQNAGLPSNSVKLLAVSKTKPVEDLEQAYQAGQRAFGENYVQE 60
Query: 61 AKKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K K D++ FIG LQSNK + FD ++TV REK A L+ +
Sbjct: 61 GVEKIEFFQAKHPDMEWHFIGPLQSNKTRLVAEYFDWMQTVDREKIAIRLNEQRPANKSP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
L V IQ+N E KSGI P + L + GLM IP A + F
Sbjct: 121 LNVLIQINISDEESKSGIKPADMMALAEIIENLPHLRLRGLMAIPAATHDVAIQAQSFSA 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ E + + LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 MHKLFVELQQSLPNQRIDTLSMGMTDDMTAAIKCGSTMVRIGTAIFGSR 229
>gi|332308055|ref|YP_004435906.1| alanine racemase domain protein [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332175384|gb|AEE24638.1| alanine racemase domain protein [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 227
Score = 287 bits (736), Expect = 6e-76, Method: Composition-based stats.
Identities = 77/225 (34%), Positives = 109/225 (48%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L++ + I S A RP +SV L+AV+K I A G +F EN +QE
Sbjct: 3 TIAERLKIALKTITQSVCEANRPANSVKLLAVTKTKPVSDIVQAYEAGHRLFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + D++ FIG LQSNK + FD + ++ R K A L+ + + L
Sbjct: 63 VDKIHQLSELDDIEWHFIGPLQSNKTRPVAENFDWVHSIDRLKIAQRLNDQRSAH-KKLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQVN E K+G+ P L + GLM IP A N + LS +
Sbjct: 122 VCIQVNIDNEASKAGVPPEDVNLLAEQISNMPNLTLRGLMTIPKAQQNAEMQRKSLSAMN 181
Query: 182 --------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ LSMGM+ D +LAI G+T VRIGS IFG R
Sbjct: 182 ALFVQLQTKYPQIDTLSMGMSNDMQLAIECGSTMVRIGSAIFGSR 226
>gi|71737988|ref|YP_272771.1| hypothetical protein PSPPH_0468 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71558541|gb|AAZ37752.1| conserved hypothetical protein TIGR00044 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320321983|gb|EFW78079.1| hypothetical protein PsgB076_24359 [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330912|gb|EFW86886.1| hypothetical protein PsgRace4_06068 [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 228
Score = 287 bits (736), Expect = 6e-76, Method: Composition-based stats.
Identities = 78/224 (34%), Positives = 107/224 (47%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAANREPASVGLLAVSKTKPAGDLREAYTAGLRNFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L + FIG +QSNK I F + +V R K A LS + + L
Sbjct: 63 LGKQLELSDLP-LCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEALEPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
+ IQVN E KSG P +L + GLM IP +P F +
Sbjct: 122 ICIQVNVSGEASKSGCTPQDLPTLAAAIIALPRLKLRGLMAIPEPTDDPAAQHASFAAVR 181
Query: 179 EIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 TLQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|301155770|emb|CBW15238.1| predicted enzyme [Haemophilus parainfluenzae T3T1]
Length = 235
Score = 287 bits (736), Expect = 7e-76, Method: Composition-based stats.
Identities = 79/232 (34%), Positives = 114/232 (49%), Gaps = 11/232 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L+ Q+I+ S LA RP+ +V+L+AVSK ++ I A GQ F EN +QE
Sbjct: 2 MTIQQALETIHQQIQTSTQLAHRPESAVTLLAVSKTKPNEAILEAYHAGQKAFGENYVQE 61
Query: 61 AKKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + ++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 62 GVDKIQYFEAQNIQLEWHFIGPLQSNKTRLVAEHFDWMQTLERAKIADRLNEQRPTNKAP 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
L V IQ+N E KSGI P++ + L + GLM IP N + F
Sbjct: 122 LNVLIQINISDEASKSGIQPSEMIELAKHIENLPHLRLRGLMAIPAPTDNIAEQEAAFNQ 181
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ ++ + K + LSMGMT D + AI G+T VRIG+ IFG R
Sbjct: 182 MEQLFEQLKIAFPHQQIDTLSMGMTDDMQSAIKCGSTMVRIGTAIFGARDYS 233
>gi|330873946|gb|EGH08095.1| hypothetical protein PSYMP_05414 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 228
Score = 287 bits (736), Expect = 7e-76, Method: Composition-based stats.
Identities = 77/224 (34%), Positives = 106/224 (47%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ AKR SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAAKRDPASVGLLAVSKTKPAGDLREAYTAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L + FIG +QSNK I F + +V R K A LS + + L
Sbjct: 63 LGKQLELADLP-LCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPESLEPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QVN E KSG P +L + GLM IP +P + +
Sbjct: 122 ICVQVNVSGEASKSGCAPQDLPALAAAISALPRLKLRGLMAIPEPTDDPAAQAASFAAVR 181
Query: 182 R-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 TLQAQLNLPLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|300900232|ref|ZP_07118416.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 198-1]
gi|300356248|gb|EFJ72118.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 198-1]
Length = 234
Score = 287 bits (736), Expect = 7e-76, Method: Composition-based stats.
Identities = 71/230 (30%), Positives = 108/230 (46%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIAQAIDAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 63 VDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + + +L + GLM IP F + +
Sbjct: 123 LNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T RIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMGRIGTAIFGARDYS 232
>gi|312963622|ref|ZP_07778103.1| protein of unknown function UPF0001 [Pseudomonas fluorescens WH6]
gi|311282131|gb|EFQ60731.1| protein of unknown function UPF0001 [Pseudomonas fluorescens WH6]
Length = 228
Score = 287 bits (736), Expect = 7e-76, Method: Composition-based stats.
Identities = 75/224 (33%), Positives = 104/224 (46%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + + ++I +A +R +S+ L+AVSK ++ +R A + G F EN LQEA
Sbjct: 3 TIADNIGQVSRRIRAAADAVQRDANSIHLLAVSKTKPAQAVREAYAAGMRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + FIG +QSNK I F + +V R K A LS + L
Sbjct: 63 LGKQAELTDLP-LSWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPADLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
+ IQVN E KSG P +L + GLM IP + F +
Sbjct: 122 ICIQVNVSGEASKSGCTPADLPALANAISALPRLKLRGLMAIPEPTEDRAEQDAAFATVR 181
Query: 179 EIAR--ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 ELQAGLNLPLDTLSMGMSHDLESAIAQGATWVRIGTALFGARDY 225
>gi|259909615|ref|YP_002649971.1| hypothetical protein EpC_29900 [Erwinia pyrifoliae Ep1/96]
gi|224965237|emb|CAX56769.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96]
Length = 237
Score = 287 bits (736), Expect = 7e-76, Method: Composition-based stats.
Identities = 77/226 (34%), Positives = 108/226 (47%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +Q+I +A R ++L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 SIKHNLQQVRQRISAAAAKCGRASQEITLLAVSKTKTASAIEEAVAAGQCCFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + FIG LQSNK + FD TV R + AS LS + L
Sbjct: 63 VDKI-QLLANPSLVWHFIGPLQSNKSRLVAEHFDWCHTVDRLRIASRLSQQRPDTLAPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQ+N E KSGIM + + +L + GLM IP N + ++A
Sbjct: 122 VLIQINISAEPSKSGIMLAELPALALQIAALPRLKLRGLMAIPAPQDNYDSQLAVCQQMA 181
Query: 182 --------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 182 TAFEHLQQDYPGVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGARD 227
>gi|300718247|ref|YP_003743050.1| hypothetical protein [Erwinia billingiae Eb661]
gi|299064083|emb|CAX61203.1| Conserved uncharacterized protein [Erwinia billingiae Eb661]
Length = 235
Score = 287 bits (736), Expect = 7e-76, Method: Composition-based stats.
Identities = 73/229 (31%), Positives = 107/229 (46%), Gaps = 9/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +++I +A R ++L+AVSK + A++ GQ F EN +QE
Sbjct: 3 SIQHNLQQVRERISAAAAKCGRDPAEITLLAVSKTKPQSAVEEAIAAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L ++ FIG LQSNK + FD TV R K A+ L+ + L
Sbjct: 63 VDKILALGNSA-LEWHFIGPLQSNKSRLVAENFDWCHTVDRLKIATRLNEQRPADLPSLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQ+N E KSGIM + +L + GLM IP + ++A
Sbjct: 122 VLIQINISDENSKSGIMLEALSELAKEIALLPRLTLRGLMAIPAPEAEYSRQLAVCQQMA 181
Query: 182 --------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 182 EAFNALKKDYPAVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGARDYSA 230
>gi|323498672|ref|ZP_08103663.1| TIM-barrel fold family protein [Vibrio sinaloensis DSM 21326]
gi|323316272|gb|EGA69292.1| TIM-barrel fold family protein [Vibrio sinaloensis DSM 21326]
Length = 238
Score = 287 bits (735), Expect = 7e-76, Method: Composition-based stats.
Identities = 77/234 (32%), Positives = 114/234 (48%), Gaps = 13/234 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +I ++ RP+DSV L+AVSK + I A GQ+ F EN +QE
Sbjct: 3 SIQQNIEQITSQIASAQQKCGRPRDSVQLLAVSKTKPNGAILEAAQAGQLAFGENYVQEG 62
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K + E +++ FIG +QSNK + F + TV R K A L+ + S
Sbjct: 63 AEKVAYFTQHHPELELEWHFIGPIQSNKSRHVAENFAWVHTVDRAKIAQRLNDQRPAGSP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFY 175
+ V +QVNT E KSG+ ++ L L + GLM IP + + F
Sbjct: 123 PIQVLMQVNTSGEASKSGLNQDEIFALAELISSLPNLTLRGLMSIPANVSDYDSQLAAFK 182
Query: 176 LLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L+E+ + +L LSMGM+ D E AI +G+T VRIG+ IFG R
Sbjct: 183 QLAELQQTLINRYPNQQLDTLSMGMSGDMEAAIEAGSTMVRIGTAIFGARDYSN 236
>gi|28872160|ref|NP_794779.1| hypothetical protein PSPTO_5046 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28855414|gb|AAO58474.1| conserved protein of unknown function [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 228
Score = 287 bits (735), Expect = 7e-76, Method: Composition-based stats.
Identities = 79/224 (35%), Positives = 108/224 (48%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ AKR SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAAKRDPASVGLLAVSKTKPAGDLREAYTAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L + FIG +QSNK I F + +V R K A LS + + L
Sbjct: 63 LGKQLELADLP-LCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEGLEPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+ IQVN E KSG P +L + GLM IP +P F +
Sbjct: 122 ICIQVNVSGEASKSGCAPQDLPALAAAINALPRLKLRGLMAIPEPTDDPAAQAASFAAVR 181
Query: 179 EIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 TLQEQLNLSLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|315122023|ref|YP_004062512.1| hypothetical protein CKC_01365 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495425|gb|ADR52024.1| hypothetical protein CKC_01365 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 222
Score = 287 bits (735), Expect = 8e-76, Method: Composition-based stats.
Identities = 169/221 (76%), Positives = 192/221 (86%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL +KLQ FKQKI +LAKR K SVSLVAVSKMVD + I+ ALSCGQ+IFAE+KLQE
Sbjct: 1 MSLEHKLQAFKQKIAYHEMLAKRLKGSVSLVAVSKMVDIQTIQSALSCGQIIFAESKLQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+KKW LRKEWD+QLRFIGSLQSNK+SEIVS FDVIETV REK ASLLS+EM KQ FL
Sbjct: 61 AQKKWSFLRKEWDIQLRFIGSLQSNKISEIVSFFDVIETVDREKIASLLSIEMEKQKCFL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
P+YIQVNTG E QKSG+MPN+TKDF++LCRQKY+LNVEGLMCIPP NP PHF LLS+I
Sbjct: 121 PIYIQVNTGCEKQKSGVMPNETKDFIVLCRQKYRLNVEGLMCIPPVTSNPGPHFCLLSKI 180
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
A+EC++TKLSMGMT+D++LAIA GATSVRIGSGIFGER Q
Sbjct: 181 AKECEITKLSMGMTKDYDLAIAFGATSVRIGSGIFGERSYQ 221
>gi|149376943|ref|ZP_01894697.1| hypothetical protein MDG893_14515 [Marinobacter algicola DG893]
gi|149358720|gb|EDM47190.1| hypothetical protein MDG893_14515 [Marinobacter algicola DG893]
Length = 230
Score = 287 bits (735), Expect = 8e-76, Method: Composition-based stats.
Identities = 74/228 (32%), Positives = 109/228 (47%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + + ++I+ + + A R SV L+AVSK + ++R A S GQ F EN +QEA
Sbjct: 3 SIADNIGSVTRRIQKATLKAGRSAGSVYLLAVSKTRPADELRTAYSAGQRAFGENYVQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L++ ++ FIG +QSNK +I F +V R K A L+ + L
Sbjct: 63 LDKMEELKELDAIEWHFIGPIQSNKTRQIAEAFAWAHSVDRLKIAQRLNDQRPPTLPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QVN E KSG + D + L++ GLM IP ++A
Sbjct: 123 ICLQVNINNEESKSGCALEELIDMADAIEEMPNLSLRGLMAIPDPDQPEAELRSSFRKLA 182
Query: 182 RECK-----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K L LSMGM+ D E+AI GAT VR+G+ +FG R
Sbjct: 183 NALKHMRQEASGCGPLDTLSMGMSGDLEMAIEEGATWVRVGTALFGPR 230
>gi|225027659|ref|ZP_03716851.1| hypothetical protein EUBHAL_01918 [Eubacterium hallii DSM 3353]
gi|224954973|gb|EEG36182.1| hypothetical protein EUBHAL_01918 [Eubacterium hallii DSM 3353]
Length = 230
Score = 287 bits (735), Expect = 8e-76, Method: Composition-based stats.
Identities = 73/229 (31%), Positives = 109/229 (47%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ + I+ + R + V+LVAVSKM I L GQ+ + EN +QE
Sbjct: 2 LKENLKNVQNNIKKACERVGRKPEEVTLVAVSKMKPLSDIEELLETGQLEYGENYVQELC 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ + K V IG LQ+NKV I+ ++I +V A + E +K+ +
Sbjct: 62 DKYENISK--PVHWHMIGHLQTNKVKYIIDKVELIHSVDSLHLAKQIEKEAVKKGVDAQI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
+QVN E K GI + V + +++ GLM P + NP+ +F L +
Sbjct: 120 LVQVNIAQEDTKFGIDGPEVMSLVEEISKFPHVHIRGLMTSAPFVANPEENRCYFKKLHK 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 180 LFVDIREKNIDNVSMDILSMGMTNDYEVAIEEGATMVRVGTGIFGARNY 228
>gi|238763261|ref|ZP_04624226.1| alanine racemase [Yersinia kristensenii ATCC 33638]
gi|238698534|gb|EEP91286.1| alanine racemase [Yersinia kristensenii ATCC 33638]
Length = 231
Score = 287 bits (735), Expect = 9e-76, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 104/228 (45%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + +I +A R + V+L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIEQNLQDVRAQIATAARNCGRSPEEVTLLAVSKTKPVSAIEEAIAAGQYAFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K ++ FIG LQSNK + F TV R K A LS + +
Sbjct: 63 VDKIHYFADNAPSAHLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPPEMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L + IQVN E KSGI + L++ GLM IP + + +
Sbjct: 123 ALNILIQVNISDEQSKSGITLAELPALAASINALPNLHLRGLMAIPAPETDYQRQLAVFE 182
Query: 179 EIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + ++ LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 183 QMNQAFLTLKASYPQMDTLSMGMTDDMAAAIAAGSTLVRIGTAIFGSR 230
>gi|221128049|ref|XP_002155398.1| PREDICTED: similar to CG1983 CG1983-PA [Hydra magnipapillata]
Length = 232
Score = 286 bits (734), Expect = 1e-75, Method: Composition-based stats.
Identities = 80/233 (34%), Positives = 109/233 (46%), Gaps = 18/233 (7%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L Q+I + + RP DSV L+AVSK ++ A GQ F EN +Q
Sbjct: 1 MTMIADNLHAVAQRIAQACTQSGRPADSVRLLAVSKTFGPDAVQQAFDAGQRAFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L ++ IG +QSNK + F ++TV R K A LS +
Sbjct: 61 EAVDKISALSALP-IEWHCIGPIQSNKTRLVAEHFQWVQTVDRLKIAQRLSDQRPPHLPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQVN KSG+ P + Q +L + G+MCIP P P F
Sbjct: 120 LQVCIQVNVDGGPTKSGVTPQDAVALALEVAQLPRLQLRGIMCIP----EPAPDFVAARA 175
Query: 180 ------------IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A+ L LSMGM+ D + A+A G+T VR+GS IFG RP
Sbjct: 176 VFMSAKAVFDAVVAQGLPLDTLSMGMSGDLDAAVAGGSTMVRVGSAIFGARPT 228
>gi|238759328|ref|ZP_04620494.1| alanine racemase [Yersinia aldovae ATCC 35236]
gi|238702489|gb|EEP95040.1| alanine racemase [Yersinia aldovae ATCC 35236]
Length = 228
Score = 286 bits (734), Expect = 1e-75, Method: Composition-based stats.
Identities = 77/225 (34%), Positives = 104/225 (46%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + KI +A R + V L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIEQNLQDVRAKIATAARNCARSPEEVILLAVSKTKPVTAIEEAIAAGQYAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K +++ FIG LQSNK + F TV R K A LS + L
Sbjct: 63 VDKIHYFANNANLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPAAMPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
V IQVN E KSGI + LN+ GLM IP + + + ++
Sbjct: 123 VLIQVNISDEESKSGIALAGLPALADSLSELPNLNLRGLMAIPAVESDYQRQLAVFEQMH 182
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
AR ++ LSMGMT D AI++G+T VRIG+ IFG R
Sbjct: 183 QAFLTLKARYPQMDTLSMGMTDDMAAAISAGSTLVRIGTAIFGSR 227
>gi|260773602|ref|ZP_05882518.1| hypothetical protein VIB_002076 [Vibrio metschnikovii CIP 69.14]
gi|260612741|gb|EEX37944.1| hypothetical protein VIB_002076 [Vibrio metschnikovii CIP 69.14]
Length = 238
Score = 286 bits (734), Expect = 1e-75, Method: Composition-based stats.
Identities = 79/232 (34%), Positives = 110/232 (47%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +++++ R SV L+AVSK + I A GQ+ F EN +QE
Sbjct: 3 SIQQNIEQITSQMKSAQQKCGRSPSSVQLLAVSKTKPVEAILEAALAGQLAFGENYVQEG 62
Query: 62 KKKWIPLRKE---WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + D++ FIG LQSNK I FD + T+ R K A LS +
Sbjct: 63 VNKIRYFAEHHPQLDLEWHFIGPLQSNKTRLIAEHFDWMHTLDRAKIAQRLSEQRPAHKA 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVNT E KSGI L + L + GLM IP + + F
Sbjct: 123 PLQVLIQVNTSGETSKSGISEQALFPLAELISELPNLTLRGLMSIPENVADYAEQLVAFQ 182
Query: 176 LLSEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L+++ R L LSMGM+ D + AI +G+T VRIG+ IFG+R T
Sbjct: 183 RLADLQARLTERYPALDTLSMGMSGDMQAAIEAGSTMVRIGTAIFGQRDYPT 234
>gi|298293747|ref|YP_003695686.1| alanine racemase domain protein [Starkeya novella DSM 506]
gi|296930258|gb|ADH91067.1| alanine racemase domain protein [Starkeya novella DSM 506]
Length = 232
Score = 286 bits (734), Expect = 1e-75, Method: Composition-based stats.
Identities = 103/220 (46%), Positives = 140/220 (63%), Gaps = 3/220 (1%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L ++L +++I ++ A R + V LVAVSK D++ I A+ GQ IF EN++QEA
Sbjct: 13 DLTSRLGEVRERIARASRDAGRKPEEVHLVAVSKTFDAEHILPAIEAGQRIFGENRVQEA 72
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK-QSRF 119
+ KW LR + D++L IG LQ+NKV + + LFDVI T+ R A+ L+ E K + R
Sbjct: 73 RAKWPALRADYPDIELHLIGPLQTNKVRDALGLFDVIHTLDRPSLAAALAKEFAKLEGRP 132
Query: 120 LP-VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
P + IQVNTG E QK+G+ P + F+ CR + L +EGLMCIPPA PHF LL+
Sbjct: 133 APRLLIQVNTGEEPQKAGVAPLEADAFIAECRDVHGLTIEGLMCIPPADEPAAPHFALLA 192
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+IAR L+ LSMGM+ D+E AI GAT VR+GS IFG R
Sbjct: 193 KIARRNGLSALSMGMSGDYETAIGLGATYVRVGSAIFGTR 232
>gi|86158925|ref|YP_465710.1| hypothetical protein Adeh_2503 [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775436|gb|ABC82273.1| protein of unknown function UPF0001 [Anaeromyxobacter dehalogenans
2CP-C]
Length = 227
Score = 286 bits (734), Expect = 1e-75, Method: Composition-based stats.
Identities = 75/218 (34%), Positives = 111/218 (50%), Gaps = 10/218 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++L + ++ V+LVAVSK + IR A + GQ F EN QE
Sbjct: 6 SIADRLAAIRAEL----------PAGVTLVAVSKTQPPEAIREAYAAGQRDFGENYAQEW 55
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L ++ FIG LQ+NK + ++ V RE+ A+ LS ++
Sbjct: 56 RAKADALADLPGLRWHFIGGLQTNKAKYLAGRVALVHAVDREELAAELSRRFGQKGATAR 115
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V ++VN G E K G P++ + R + + GLMCIPP +P+PHF L +
Sbjct: 116 VLLEVNVGGEASKEGCPPDRVEALAAAVRALPSVELAGLMCIPPPADDPRPHFRALRALR 175
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +LSMGM+ D+ +A+ GAT VR+GS IFG RP
Sbjct: 176 DRLGLRELSMGMSADWRIAVEEGATLVRVGSAIFGARP 213
>gi|113461358|ref|YP_719427.1| hypothetical protein HS_1215 [Haemophilus somnus 129PT]
gi|112823401|gb|ABI25490.1| conserved hypothetical protein [Haemophilus somnus 129PT]
Length = 231
Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 111/229 (48%), Gaps = 11/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + N L ++I AKR +VSL+AVSK + I +A GQ F EN +QE
Sbjct: 2 MQIKNNLAKINRQISQYCEQAKRNSSTVSLLAVSKTKPVEDILIAYQAGQTAFGENYVQE 61
Query: 61 AKKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + ++ FIG LQSNK + FD ++T+ REK A+ L+ + +
Sbjct: 62 GVEKIQYFIEQHIQLEWHFIGPLQSNKTKLVAENFDWMQTLDREKIATRLNEQRPHYKQP 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
L V IQ+N E KSGI P + + L + GLM IP N + F
Sbjct: 122 LNVLIQINISAENSKSGIQPQEMLSLAKHIQNLPHLRLRGLMAIPEPTDNITAQEQAFNQ 181
Query: 177 LSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + K+ LSMGM+ D AI G+T VRIG+ IFG+R
Sbjct: 182 MKYLFTQLQLAFPDEKIDTLSMGMSDDMASAIKCGSTMVRIGTAIFGKR 230
>gi|153828401|ref|ZP_01981068.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|148876110|gb|EDL74245.1| conserved hypothetical protein [Vibrio cholerae 623-39]
Length = 236
Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats.
Identities = 81/231 (35%), Positives = 113/231 (48%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRDFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVNMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVNT E KSGI P Q L + L + GLM IP + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|290476320|ref|YP_003469224.1| PLP-binding domain-containing protein [Xenorhabdus bovienii
SS-2004]
gi|289175657|emb|CBJ82460.1| putative enzyme with PLP-binding domain [Xenorhabdus bovienii
SS-2004]
Length = 233
Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats.
Identities = 71/229 (31%), Positives = 105/229 (45%), Gaps = 8/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L + +I +A R ++L+AVSK + I A+ GQ F EN ++E
Sbjct: 3 NIEQNLHDVRNRIALTAQKCGRYPQEITLLAVSKTKPADAIAKAIETGQREFGENYVREG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K D+ FIG LQSNK + FD T+ R K A LS + + L
Sbjct: 63 VEKVQHFANHNDLVWHFIGPLQSNKSRLVAEHFDWCHTIDRLKIAQRLSEQRPENMAPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ IQ+N E KSGI+ + L + GLM IP + + + ++
Sbjct: 123 ILIQINISGEDSKSGIILTALPELAKTINALPNLVLRGLMAIPAPESDFERQMAIFHQME 182
Query: 182 --------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ ++ LSMGMT D E AI+ G+T VRIG+ IFG R T
Sbjct: 183 QAFIELKTQYPRVDTLSMGMTDDMEAAISCGSTLVRIGTAIFGARQYNT 231
>gi|148550169|ref|YP_001270271.1| alanine racemase domain-containing protein [Pseudomonas putida F1]
gi|148514227|gb|ABQ81087.1| alanine racemase domain protein [Pseudomonas putida F1]
Length = 228
Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats.
Identities = 78/226 (34%), Positives = 101/226 (44%), Gaps = 6/226 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + L +I ++A R SV L+AVSK + IR + G F EN LQEA
Sbjct: 3 TLADNLSAISARIASAAQAVGRDPASVQLLAVSKTKPASAIREIHAAGVRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + FIG +QSNK I FD + +V R K A LS + L
Sbjct: 63 LTKQQALSDLPLI-WHFIGPIQSNKTKAIAEHFDWVHSVDRLKIAQRLSEQRPAGLAPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
+ +QVN E KSG P L + GLM IP + + F L
Sbjct: 122 ICLQVNVSGEDSKSGCTPADLPALAKAVAALPNLRLRGLMAIPKPTEDRATQEAAFASLR 181
Query: 179 EIAREC--KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 KLQEGLGFGLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDYGN 227
>gi|307824924|ref|ZP_07655146.1| alanine racemase domain protein [Methylobacter tundripaludum SV96]
gi|307733971|gb|EFO04826.1| alanine racemase domain protein [Methylobacter tundripaludum SV96]
Length = 227
Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats.
Identities = 71/225 (31%), Positives = 107/225 (47%), Gaps = 7/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L+ + +I ++ + R SV L+AVSK S+ I A GQ F EN LQEA
Sbjct: 3 TITERLKHIRSQISDAELACNRQPGSVLLLAVSKTKPSEDIAAAYQSGQRHFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L + + FIG +QSNK + + FD + +V K A LS + L
Sbjct: 63 LRKQQELGA-YAITWHFIGPIQSNKTRPLATHFDWVHSVDSLKIAKRLSEQRPAHLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QVN E KSGI + + L + G+M IP + + +
Sbjct: 122 ICLQVNISNEPSKSGITLAELPQLCEQIAKLPNLKLRGVMAIPAPQDDFEQQRQPYKALY 181
Query: 182 R------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + +L S GMT D + AIA G+T VRIG+ +FGER
Sbjct: 182 QAVAKLGQAELDTFSFGMTGDLKAAIAEGSTIVRIGTALFGERNY 226
>gi|77918018|ref|YP_355833.1| PLP dependent enzymes class III-like protein [Pelobacter
carbinolicus DSM 2380]
gi|77544101|gb|ABA87663.1| PLP dependent enzymes class III-like protein [Pelobacter
carbinolicus DSM 2380]
Length = 228
Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats.
Identities = 79/229 (34%), Positives = 113/229 (49%), Gaps = 13/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ LQ ++++ + R + V LVAVSK + I A + GQ +F EN +QE
Sbjct: 1 MSIQTNLQTIRERMNAACRRVNRNPEDVQLVAVSKTKPADMIEAAAAAGQSLFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + V FIGSLQSNKV + +I +V R A + + K
Sbjct: 61 FLTKTEDV--TVPVVWHFIGSLQSNKVKYLCGKVAMIHSVDRLSLAKEIDRQWGKSGETA 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+ IQVN G E KSG +D V + + GLM +PP + +P +P F L
Sbjct: 119 QILIQVNLGQEESKSGTEEAALEDLVRKVAALPHIRICGLMALPPYLDDPEQVRPFFRRL 178
Query: 178 SEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A ++ +LSMGM+ DF++AI GAT VR+GS IFG R
Sbjct: 179 RQLADMLAALNIPGVEMRELSMGMSHDFDVAIEEGATLVRVGSAIFGSR 227
>gi|90580285|ref|ZP_01236092.1| Predicted enzyme with a TIM-barrel fold protein [Vibrio angustum
S14]
gi|90438587|gb|EAS63771.1| Predicted enzyme with a TIM-barrel fold protein [Vibrio angustum
S14]
Length = 236
Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats.
Identities = 75/232 (32%), Positives = 104/232 (44%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + +I + R DSV L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 SIKQNIAEVINQITLATEKCGRAADSVQLLAVSKTKPVEAIEEAIAAGQYAFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + FIG +QSNK + FD + ++ R KTA LS +
Sbjct: 63 VDKVNHFSSHPEKNLLVWHFIGPIQSNKTRLVAEHFDWVHSIDRIKTAKRLSDQRPTSMA 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V +QVN+ E KSGI + + + GLM IP + F
Sbjct: 123 PLQVLLQVNSSAEATKSGITLAEVPALAAEIAAMPNIELRGLMSIPQPATDYDSQFATFK 182
Query: 179 EIA---RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+A + KL LSMGM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 ALAVTLEQLKLTYPNVDTLSMGMSGDMEAAIAAGSTIVRIGTAIFGARDYGN 234
>gi|260587699|ref|ZP_05853612.1| pyridoxal phosphate enzyme, YggS family [Blautia hansenii DSM
20583]
gi|260541964|gb|EEX22533.1| pyridoxal phosphate enzyme, YggS family [Blautia hansenii DSM
20583]
Length = 231
Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 108/231 (46%), Gaps = 13/231 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++++E + A R ++ V+L+AVSK I L F ENK+QE
Sbjct: 1 MSVCENYKEVEKRVEEACKRAGRKREEVTLIAVSKTKPVSMIEELLPLNVRDFGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + IG LQ NKV IV +I +V + A +S K+
Sbjct: 61 LTAKAEILPSA--LHWHMIGHLQRNKVKYIVDKACIIHSVDSLRLAEEISKAAQKKQVTA 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
+ I+VN E K G+ ++ + + ++GLM I P + NP+ + F L
Sbjct: 119 KILIEVNVAEEESKFGVRTSELLPLIEAISLLPNIAIKGLMTIAPYVENPEENRWIFQKL 178
Query: 178 SEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + LSMGMT D+E+AI GAT VR+G+GIFGER
Sbjct: 179 KNLSIDIKGKNFDNVTMDVLSMGMTGDYEVAIEEGATHVRVGTGIFGERNY 229
>gi|209551494|ref|YP_002283411.1| alanine racemase domain protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537250|gb|ACI57185.1| alanine racemase domain protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 219
Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats.
Identities = 115/219 (52%), Positives = 150/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I A RP SV LVAVSK +++ IR A+ GQ +F EN++QE
Sbjct: 1 MELQERLNDVRSRIAAGERQAARPAGSVELVAVSKTFEAEAIRPAIDAGQRVFGENRVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E D+ L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q +
Sbjct: 61 SQGKWPALKAERPDIVLHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQDKR 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y+QVNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP PHF LL++
Sbjct: 121 PRLYVQVNTGLEPQKAGIAPDDTPAFVSLCRDELGLSIEGLMCIPPAEENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C + KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 181 LALKCGVEKLSMGMSGDYETAIAFGATSVRVGSAIFGAR 219
>gi|104779598|ref|YP_606096.1| hypothetical protein PSEEN0318 [Pseudomonas entomophila L48]
gi|95108585|emb|CAK13279.1| conserved hypothetical protein [Pseudomonas entomophila L48]
Length = 228
Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats.
Identities = 79/224 (35%), Positives = 105/224 (46%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + +I+N+A A R S+ L+AVSK + IR A + G F EN LQEA
Sbjct: 3 TLAENISAISARIDNAAKAAGRAPASIQLLAVSKTKPASAIREAHASGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + FIG +QSNK I FD + +V R K A LS + L
Sbjct: 63 LTKQQELSDLPLI-WHFIGPIQSNKTKAIAEHFDWVHSVDRLKIAQRLSEQRPANLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
+ +QVN E KSG P + L + GLM IP N + F L
Sbjct: 122 ICLQVNVSGEDSKSGCAPAELPALAQAVSALPGLRLRGLMAIPEPTDNRTEQEAAFATLR 181
Query: 179 EIARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + L LSMGM+ D E AI+ GAT VRIG+ +FG R
Sbjct: 182 QLQEQLDLGLDTLSMGMSHDLEAAISQGATWVRIGTALFGARDY 225
>gi|229824759|ref|ZP_04450828.1| hypothetical protein GCWU000182_00107 [Abiotrophia defectiva ATCC
49176]
gi|229791088|gb|EEP27202.1| hypothetical protein GCWU000182_00107 [Abiotrophia defectiva ATCC
49176]
Length = 231
Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats.
Identities = 74/231 (32%), Positives = 114/231 (49%), Gaps = 13/231 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L + + KI + A R +D V L+AVSK + IR A+ G F EN++QE
Sbjct: 1 MSITENLSMVENKIAAACKRAGRERDEVKLIAVSKTQPVEAIREAIEYGINSFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K ++ D IG LQ+NKV +V +I ++ + A L E K +
Sbjct: 61 LREKTEIIKDNLD--WHLIGHLQTNKVKYVVGKVSLIHSLENIRLAEALDKEAAKLGITV 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYLL 177
V ++N E K G+ P ++F+ + +N++GLM + P + +F L
Sbjct: 119 DVLAEINVAKEASKFGVNPEDAENFIREVSKFPNINIKGLMTVAPYTDISEENRKYFRQL 178
Query: 178 SEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+I + LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 179 KKIMVDLNSKNIHNVSMNVLSMGMTGDYEVAIEEGATLVRVGTGIFGSRNY 229
>gi|229593134|ref|YP_002875253.1| putative recemase [Pseudomonas fluorescens SBW25]
gi|229365000|emb|CAY53143.1| putative recemase [Pseudomonas fluorescens SBW25]
Length = 228
Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats.
Identities = 75/224 (33%), Positives = 101/224 (45%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + + Q+I +A +R S+ L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIADNIGQVSQRIRAAADAVQRDASSIHLLAVSKTKPAPAVREAYAAGMRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + FIG +QSNK I F + +V R K A LS + L
Sbjct: 63 LGKQAELTDLP-LSWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPADLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ IQVN E KSG P D +L + GLM IP + + +
Sbjct: 122 ICIQVNVSGEASKSGCTPADLPDLANAISALPRLKLRGLMAIPEPTEDRAAQDAAFAAVR 181
Query: 182 R-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 DLQNSLNLPLDTLSMGMSHDLESAIAQGATWVRIGTALFGARDY 225
>gi|91781864|ref|YP_557070.1| hypothetical protein Bxe_A3981 [Burkholderia xenovorans LB400]
gi|91685818|gb|ABE29018.1| Protein of unknown function UPF0001 [Burkholderia xenovorans LB400]
Length = 232
Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats.
Identities = 78/230 (33%), Positives = 109/230 (47%), Gaps = 9/230 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + L+ +Q+I +A +A R S+ L+AVSK ++ +R A + GQ F EN +QEA
Sbjct: 3 DLIHNLEAVRQRIATAAHVAGRDTRSIHLLAVSKTFPAEDVRAAYAAGQRAFGENYVQEA 62
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L ++ FIG LQSNK + FD + +V R K A LS + L
Sbjct: 63 ITKIEALADLRATIEWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDNLPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---YLL 177
V +QVN E KSG+ + +L + GLM IP G+ L
Sbjct: 123 NVCLQVNISGEASKSGVGIAEAAQVAQAIAALPKLKLRGLMAIPEPAGSIDEQRVPHRQL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
E+ + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 183 RELFERLRDGGLALDTLSMGMSSDLEAAVLEGATIVRVGTAIFGARDYSN 232
>gi|296161767|ref|ZP_06844569.1| alanine racemase domain protein [Burkholderia sp. Ch1-1]
gi|295887931|gb|EFG67747.1| alanine racemase domain protein [Burkholderia sp. Ch1-1]
Length = 232
Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats.
Identities = 79/230 (34%), Positives = 109/230 (47%), Gaps = 9/230 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + L+ +Q+I +A +A R S+ L+AVSK ++ +R A GQ F EN +QEA
Sbjct: 3 DLIHNLEAVRQRIATAAHVAGRDTRSIHLLAVSKTFPAEDVRAAYGAGQRAFGENYVQEA 62
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L ++ FIG LQSNK + FD + +V R K A LS + L
Sbjct: 63 ITKIEALADLRATIEWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDNLPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---YLL 177
V +QVN E KSG+ + +LN+ GLM IP G+ L
Sbjct: 123 NVCLQVNISGEASKSGVGIAEAAQVAQAIAALPKLNLRGLMAIPEPAGSIDEQRVPHRQL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
E+ + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 183 RELFERLRDGGLALDTLSMGMSSDLEAAVLEGATIVRVGTAIFGARDYSN 232
>gi|240138136|ref|YP_002962608.1| putative enzyme with PLP-binding domain, putative alanine racemase
[Methylobacterium extorquens AM1]
gi|240008105|gb|ACS39331.1| putative enzyme with PLP-binding domain, putative alanine racemase
[Methylobacterium extorquens AM1]
Length = 246
Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats.
Identities = 102/222 (45%), Positives = 132/222 (59%), Gaps = 1/222 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + I +A +R SV LVAVSK V ++ I AL GQ IF EN +QE+
Sbjct: 25 DVAAGLAEVRASIRRAAEDNERDPASVHLVAVSKTVPAEGILPALEAGQRIFGENYVQES 84
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K KW LR+ DV+L +G LQSNK E V LFDVI ++ R A+ L+ E+ + R
Sbjct: 85 KAKWPALRERFPDVELHLVGPLQSNKAREAVELFDVIHSLDRLSLAAALAKEIERSGRAP 144
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ IQVNTG E QK+G+ P+Q + CR+ + L + GLMCIPPA P PHF LL+ I
Sbjct: 145 KLLIQVNTGDETQKAGVSPDQVDVLLSECRETHNLAIHGLMCIPPADDPPSPHFALLARI 204
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
A L LSMGM+ DF AI GAT VR+G+ IFG R +T
Sbjct: 205 AERHGLPILSMGMSADFPAAIQMGATHVRVGTAIFGRRTKRT 246
>gi|330505390|ref|YP_004382259.1| alanine racemase domain-containing protein [Pseudomonas mendocina
NK-01]
gi|328919676|gb|AEB60507.1| alanine racemase domain-containing protein [Pseudomonas mendocina
NK-01]
Length = 230
Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats.
Identities = 73/224 (32%), Positives = 103/224 (45%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +I +A ++R + L+AVSK ++ IR A + G F EN LQEA
Sbjct: 3 TIAENIAKVGARIREAAQASQRNLADIGLLAVSKTKPAEAIREAHAAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L + FIG +QSNK I FD + +V R K A LS + L
Sbjct: 63 LEKQTQLTDLPLI-WHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSDQRPAHLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QVN E KSG P + + L + GLM IP + + +
Sbjct: 122 ICLQVNVSGEDSKSGCSPEELPELAKAIAALPNLQLRGLMTIPEPTEDVTAQHAAFARLR 181
Query: 182 R-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 QLRDDLALDLDTLSMGMSHDLEAAIAEGATWVRIGTALFGARDY 225
>gi|325661586|ref|ZP_08150210.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
4_1_37FAA]
gi|331084855|ref|ZP_08333943.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325472113|gb|EGC75327.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
4_1_37FAA]
gi|330410949|gb|EGG90371.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 233
Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats.
Identities = 75/229 (32%), Positives = 115/229 (50%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ + K++++ + R + V+L+AVSK ++ G F ENK+QE
Sbjct: 2 LEKNLKSIQDKVKDACKRSGRHPEDVTLIAVSKTKPVSMLQEIYDLGIRQFGENKVQELT 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L K D+ IG LQ NKV ++ +I +V + A + E K++ + V
Sbjct: 62 DKYEKLPK--DISWHMIGHLQRNKVKYLIGKTTLIHSVDSLRLAEAIEAEAAKKNCLVDV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
I+VN E K GI P + V + + ++GLM I P + NP+ HF L +
Sbjct: 120 LIEVNVAGEESKFGISPEEVLPLVEQIARFRHIKIKGLMTIAPFVENPEENRIHFANLRK 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + LSMGMT D+E+AI GAT VR+G+GIFGER
Sbjct: 180 LSVDIAAKNIDNVSMRILSMGMTNDYEVAIEEGATMVRVGTGIFGERNY 228
>gi|220928048|ref|YP_002504957.1| alanine racemase domain protein [Clostridium cellulolyticum H10]
gi|219998376|gb|ACL74977.1| alanine racemase domain protein [Clostridium cellulolyticum H10]
Length = 235
Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats.
Identities = 71/230 (30%), Positives = 114/230 (49%), Gaps = 13/230 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L +I+ +A + R + L+AV+K V+ +I+ G F EN++QE
Sbjct: 5 TIKQNLDDIYSRIKIAAEKSGRKAQDIKLIAVTKTVEVGRIKNVCEYGIHDFGENRVQEL 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ + +Q IG LQ NKV I+ +I +V + A + K + +
Sbjct: 65 LEKYDKF--DESIQWHLIGHLQKNKVKYIIDKVHMIHSVDSFELAKEIDNRAGKAGKRMN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+ +QVN E K GI P++ ++V Q +++ G+M I P GNP +P F L
Sbjct: 123 ILLQVNVSGEETKFGIKPDEVNEYVGFISQLKNISLRGMMTIAPFAGNPQEIRPIFKKLY 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+I + LSMGM+ DFE+AI G+ VRIG+GIFG+R
Sbjct: 183 DIYIDIKNKRIDNVNMDYLSMGMSNDFEVAIEEGSNIVRIGTGIFGKRNY 232
>gi|170691371|ref|ZP_02882536.1| alanine racemase domain protein [Burkholderia graminis C4D1M]
gi|170143576|gb|EDT11739.1| alanine racemase domain protein [Burkholderia graminis C4D1M]
Length = 232
Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 112/229 (48%), Gaps = 9/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + L+ +Q+I +A +A R S++L+AVSK ++ +R A + GQ F EN +QEA
Sbjct: 3 DLIHNLEAVQQRIALAAHVAGRDARSIALLAVSKTFPAEDVRAAHAAGQRAFGENYVQEA 62
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L ++ FIG LQSNK + FD + +V R K A LS + + L
Sbjct: 63 LTKIEVLADLRSTLEWHFIGPLQSNKTRPVAEQFDWVHSVDRLKIAQRLSEQRPETLPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---YLL 177
V +QVN E KSG+ ++ +L + GLM IP G+ L
Sbjct: 123 NVCLQVNISGEASKSGVGVDEAVQVAKDIAALPRLRLRGLMAIPEPAGSIDDQRVPHRRL 182
Query: 178 SEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ +L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 183 RELFERLVGEGLELDTLSMGMSSDLEAAVLEGATIVRVGTAIFGARDYS 231
>gi|306844788|ref|ZP_07477373.1| conserved hypothetical protein [Brucella sp. BO1]
gi|306274960|gb|EFM56730.1| conserved hypothetical protein [Brucella sp. BO1]
Length = 226
Score = 285 bits (731), Expect = 2e-75, Method: Composition-based stats.
Identities = 116/224 (51%), Positives = 151/224 (67%), Gaps = 2/224 (0%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++Q
Sbjct: 1 MSDVVANLNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW LR+ W ++L IG LQSNK ++ ++LFDVIETV REK A+ L+ E+ KQ +
Sbjct: 61 EAQGKWPALREAWAGIELHLIGPLQSNKAADAIALFDVIETVDREKIAAALATEIRKQGK 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL
Sbjct: 121 SPKLYVQVNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLE 180
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ARE + KLSMGM+ D+E AI GATSVR+GS IFG R T
Sbjct: 181 KLAREAHVEKLSMGMSGDYETAIGFGATSVRVGSAIFGGRAYST 224
>gi|15640488|ref|NP_230115.1| hypothetical protein VC0461 [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|153802601|ref|ZP_01957187.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|153823179|ref|ZP_01975846.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|229509065|ref|ZP_04398553.1| hypothetical protein VCE_000468 [Vibrio cholerae B33]
gi|229519733|ref|ZP_04409176.1| hypothetical protein VCC_003765 [Vibrio cholerae RC9]
gi|229606245|ref|YP_002876893.1| hypothetical protein VCD_001146 [Vibrio cholerae MJ-1236]
gi|254291172|ref|ZP_04961968.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|254850692|ref|ZP_05240042.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255744292|ref|ZP_05418245.1| hypothetical protein VCH_000603 [Vibrio cholera CIRS 101]
gi|262147283|ref|ZP_06028082.1| hypothetical protein VIG_000131 [Vibrio cholerae INDRE 91/1]
gi|12230811|sp|Q9KUQ4|Y461_VIBCH RecName: Full=UPF0001 protein VC_0461
gi|9654886|gb|AAF93634.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|124121864|gb|EAY40607.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|126519305|gb|EAZ76528.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|150422866|gb|EDN14817.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|229344422|gb|EEO09397.1| hypothetical protein VCC_003765 [Vibrio cholerae RC9]
gi|229353990|gb|EEO18924.1| hypothetical protein VCE_000468 [Vibrio cholerae B33]
gi|229368900|gb|ACQ59323.1| hypothetical protein VCD_001146 [Vibrio cholerae MJ-1236]
gi|254846397|gb|EET24811.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255738232|gb|EET93624.1| hypothetical protein VCH_000603 [Vibrio cholera CIRS 101]
gi|262031277|gb|EEY49892.1| hypothetical protein VIG_000131 [Vibrio cholerae INDRE 91/1]
gi|327483315|gb|AEA77722.1| Hypothetical protein YggS, proline synthase co- transcribed
bacterial-like protein PROSC [Vibrio cholerae LMA3894-4]
Length = 236
Score = 285 bits (731), Expect = 2e-75, Method: Composition-based stats.
Identities = 81/231 (35%), Positives = 113/231 (48%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVNMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVNT E KSGI P Q L + L + GLM IP + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|94971230|ref|YP_593278.1| hypothetical protein Acid345_4204 [Candidatus Koribacter versatilis
Ellin345]
gi|94553280|gb|ABF43204.1| Protein of unknown function UPF0001 [Candidatus Koribacter
versatilis Ellin345]
Length = 231
Score = 285 bits (731), Expect = 2e-75, Method: Composition-based stats.
Identities = 78/230 (33%), Positives = 119/230 (51%), Gaps = 10/230 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + +++IE +A A R ++L+AV K + IR A + GQ +F EN++QE
Sbjct: 1 MSIAENISGIRRRIETAAKHAARNPVEIALMAVCKTKPADAIREAYAAGQRLFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L D + IG LQSNK LF +++V K A L+ + L
Sbjct: 61 FATKAPLLSGLSDARFHMIGHLQSNKSKAAAELFSAVDSVDSLKLAERLNAAARDLGKTL 120
Query: 121 PVYIQVNTGYEIQKSGIMPN--QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+ I++N G E KSG+ P + + ++ L + GLM +PP +P +P+F
Sbjct: 121 DILIEINVGGEEAKSGMPPESPEVLQILEHAKEWQNLRMRGLMTVPPFTEDPEGARPYFR 180
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E+ L +LSMGM+ DFE+AI G+T VR+G+ IFGERP
Sbjct: 181 TVRELRDSMALKGFALDQLSMGMSHDFEIAIEEGSTCVRVGTAIFGERPT 230
>gi|253990754|ref|YP_003042110.1| hypothetical protein PAU_03280 [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|211639085|emb|CAR67697.1| Hypothetical protein yggS [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782204|emb|CAQ85368.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 231
Score = 285 bits (731), Expect = 2e-75, Method: Composition-based stats.
Identities = 71/229 (31%), Positives = 107/229 (46%), Gaps = 8/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + I +A +R + ++L+AVSK + I A+ GQ F EN +QE
Sbjct: 3 NIEQNLQDVRTHIVIAAQKCERAPEEITLLAVSKTKPVEDIEKAIIAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K D+ FIG LQSNK + FD T+ R K A LS + + + L
Sbjct: 63 VEKITHFANRDDLIWHFIGPLQSNKSRLVAENFDWCHTIDRLKIAQRLSEQRPEGMKPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
+ IQ+N E KSGI ++ + + + GLM IP + + F +
Sbjct: 123 ILIQINISDEQSKSGIQLDELPMLATEVNKLPHVKLRGLMAIPAPEPDYERQLMVFRRMK 182
Query: 179 EIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ + ++ LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 183 QVFLNLKTKYPQIDTLSMGMTDDMAAAIHCGSTLVRIGTAIFGARQYHN 231
>gi|229829073|ref|ZP_04455142.1| hypothetical protein GCWU000342_01158 [Shuttleworthia satelles DSM
14600]
gi|229792236|gb|EEP28350.1| hypothetical protein GCWU000342_01158 [Shuttleworthia satelles DSM
14600]
Length = 235
Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats.
Identities = 66/232 (28%), Positives = 105/232 (45%), Gaps = 16/232 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ ++ I + A R V+LVAVSK I+ G F EN +QE
Sbjct: 2 LAENLKTVRENITEACRRANRDPSEVTLVAVSKTKPEADIQEIYGQGVRDFGENYVQELV 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD---VIETVSREKTASLLSLEMIKQSRF 119
+K L D++ IG LQ NKV + D +I +V + A ++++ K R
Sbjct: 62 EKIDHLP--GDIRWHMIGHLQRNKVKYLARRADSIALIHSVDTYRLAEEINIQAKKNKRI 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ + ++VN E K GI + +++ GLM P + N + +F
Sbjct: 120 IDILVEVNIADEDSKFGISREDALSLIQDIAGLDGIHIRGLMTSAPNVKNAEENRAYFRS 179
Query: 177 LSEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ +A ++ LSMGMT D+++AI G+T VR+G+ IFG R
Sbjct: 180 IKALAVDINSRNIDNVEMDILSMGMTNDYQIAIEEGSTMVRVGTAIFGARDY 231
>gi|262164087|ref|ZP_06031826.1| hypothetical protein VMA_000528 [Vibrio mimicus VM223]
gi|262027615|gb|EEY46281.1| hypothetical protein VMA_000528 [Vibrio mimicus VM223]
Length = 236
Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats.
Identities = 80/231 (34%), Positives = 111/231 (48%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + ++ FIG LQSNK + FD + T+ REK A L+ +
Sbjct: 63 VDKIRYFAEHHPQFALEWHFIGPLQSNKTRLVAEHFDWVHTIEREKIAVRLNEQRPADMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVNT E KSGI P Q L L + GLM IP + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPEQLFTLAELISGLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ + LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPHIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|15967083|ref|NP_387436.1| hypothetical protein SMc02812 [Sinorhizobium meliloti 1021]
gi|307302545|ref|ZP_07582302.1| alanine racemase domain protein [Sinorhizobium meliloti BL225C]
gi|307316124|ref|ZP_07595568.1| alanine racemase domain protein [Sinorhizobium meliloti AK83]
gi|15076356|emb|CAC47909.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|306897964|gb|EFN28706.1| alanine racemase domain protein [Sinorhizobium meliloti AK83]
gi|306903215|gb|EFN33805.1| alanine racemase domain protein [Sinorhizobium meliloti BL225C]
Length = 219
Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats.
Identities = 114/219 (52%), Positives = 151/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +L +I S A RP+++VSLVAVSK D++ IR + GQ +F EN++QE
Sbjct: 1 MEVEERLNEVLSRIRASEKSANRPENTVSLVAVSKTFDAETIRPVIEAGQRVFGENRVQE 60
Query: 61 AKKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW L R+ D++L IG LQSNK ++ V+LFDVIET+ REK A ++ EM +Q R
Sbjct: 61 AQAKWPALKRETPDIELHLIGPLQSNKAADAVALFDVIETIDREKIARAVAAEMKRQGRD 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ +Y+QVNTG E QK+GI P FV LCR + LN+EGLMCIPP NP PHF LL++
Sbjct: 121 IRLYVQVNTGLEPQKAGIAPEDAAAFVALCRDELALNIEGLMCIPPFDENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C L++LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 181 LAGQCGLSRLSMGMSGDFETAIAFGATGVRVGSAIFGAR 219
>gi|90023281|ref|YP_529108.1| hypothetical protein Sde_3641 [Saccharophagus degradans 2-40]
gi|89952881|gb|ABD82896.1| Protein of unknown function UPF0001 [Saccharophagus degradans 2-40]
Length = 226
Score = 285 bits (731), Expect = 3e-75, Method: Composition-based stats.
Identities = 79/224 (35%), Positives = 114/224 (50%), Gaps = 8/224 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++ +Q+I A AKR S+ L+AVSK +++++ A GQ F EN LQEA
Sbjct: 4 IQAQIESVRQQITACANAAKRDPASIKLLAVSKTQPAERLQAAYEAGQRAFGENYLQEAL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L D++ FIG +QSNK +I FD + T+ R K A L+ + + L V
Sbjct: 64 DKINAL-SNLDIEWHFIGPVQSNKTRDISENFDWVHTLDRLKIAQRLNDQRPAGTPPLNV 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
IQVN E KSG +P++ + + K L + GLM IP F + +
Sbjct: 123 CIQVNIDQEASKSGCLPDELEALALNVADKPNLQLRGLMAIPSPNQQGNCAFSRMRALLE 182
Query: 183 ECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + + LSMGM+ D AIA GAT VRIG+ IFG R
Sbjct: 183 QLQKHPKLSAMDTLSMGMSGDMAQAIAQGATIVRIGTAIFGARD 226
>gi|114564024|ref|YP_751538.1| hypothetical protein Sfri_2860 [Shewanella frigidimarina NCIMB 400]
gi|114335317|gb|ABI72699.1| Protein of unknown function UPF0001 [Shewanella frigidimarina NCIMB
400]
Length = 228
Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats.
Identities = 79/226 (34%), Positives = 115/226 (50%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +++ + + +I +A R +SL+AVSK I A GQ +F EN +QE
Sbjct: 3 TIADRISIAQSRINQAAQKCSRSSAEISLLAVSKTKPISDIVAAYQAGQRLFGENYVQEG 62
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L+ + D++ FIG LQSNK + FD + T+SR K A L + + L
Sbjct: 63 ETKINALQADYPDIEWHFIGPLQSNKTKIVAEHFDWMHTLSRAKIAQRLHEQRPINKQPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
V IQVN E KSG+ + L + GLM IP A + + F L
Sbjct: 123 NVCIQVNISQEQSKSGVNAEDVAMLALTISSLSNLKLRGLMAIPTATDDIQLQQQEFSQL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+I + K + LSMGM+ D ++AIA+G+T VRIGS IFGER
Sbjct: 183 KQIFDQLKQQYPSVDTLSMGMSGDMDIAIANGSTMVRIGSAIFGER 228
>gi|310766479|gb|ADP11429.1| UPF0001 protein yggS [Erwinia sp. Ejp617]
Length = 266
Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats.
Identities = 73/227 (32%), Positives = 105/227 (46%), Gaps = 9/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +Q+I +A R ++L+AVSK + I A++ GQ F EN +QE
Sbjct: 32 SIKHNLQQVRQRISAAAAKCGRASQEITLLAVSKTKPASAIEEAVAAGQCCFGENYVQEG 91
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + FIG LQSNK + FD T+ R + A LS + L
Sbjct: 92 VDKI-QLLANPALVWHFIGPLQSNKSRLVAENFDWCHTIDRLRIAERLSQQRPDALAPLN 150
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF------- 174
V IQ+N E KSGIM + +L + GLM IP
Sbjct: 151 VLIQINISAEQSKSGIMLAELPALAQQIAALPRLKLRGLMAIPAPQDGYDSQLAVCQLMA 210
Query: 175 YLLSEIARE-CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ ++ + LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 211 AAFKQLQQQYPGVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGARDY 257
>gi|108761718|ref|YP_630860.1| hypothetical protein MXAN_2641 [Myxococcus xanthus DK 1622]
gi|108465598|gb|ABF90783.1| conserved hypothetical protein TIGR00044 [Myxococcus xanthus DK
1622]
Length = 227
Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats.
Identities = 83/224 (37%), Positives = 118/224 (52%), Gaps = 4/224 (1%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ +L ++++ + A RP +SV+LVAVSK+ + IR A + GQ F EN QE
Sbjct: 4 SVAERLASVRERVVAACARAGRPVESVTLVAVSKLKPADLIREAYAAGQRDFGENYAQEL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L ++ IG+LQ+NKV + + R + A LS + + LP
Sbjct: 64 RDKAAELADLEGLRWHSIGALQTNKVKYVARAAGAFHALDRLEVARELSKRR-EGAPPLP 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
VY++VN G E KSG+ P+ F+ R L GLM +PP + + F L
Sbjct: 123 VYVEVNVGGEATKSGLAPDALGAFLDEVRALPGLQAVGLMALPPPTEDEARARADFQALR 182
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
E+AR L LSMG T DFE AI GAT VR+G+ IFGER ++
Sbjct: 183 ELARVHGLPGLSMGTTHDFEWAIEEGATVVRVGTAIFGERALKS 226
>gi|258620724|ref|ZP_05715759.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|258586922|gb|EEW11636.1| conserved hypothetical protein [Vibrio mimicus VM573]
Length = 236
Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats.
Identities = 80/231 (34%), Positives = 111/231 (48%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + ++ FIG LQSNK + FD + T+ REK A L+ +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIEREKIALRLNEQRPADMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVNT E KSGI P Q L L + GLM IP + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPEQLFTLAELISGLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ + LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPHIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|229512523|ref|ZP_04401994.1| hypothetical protein VCB_000163 [Vibrio cholerae TMA 21]
gi|229530303|ref|ZP_04419691.1| protein of unknown function [Vibrio cholerae 12129(1)]
gi|229332076|gb|EEN97564.1| protein of unknown function [Vibrio cholerae 12129(1)]
gi|229350416|gb|EEO15365.1| hypothetical protein VCB_000163 [Vibrio cholerae TMA 21]
Length = 236
Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats.
Identities = 81/231 (35%), Positives = 113/231 (48%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVNT E KSGI P Q L + L + GLM IP + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|121728581|ref|ZP_01681602.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|147673920|ref|YP_001215987.1| hypothetical protein VC0395_A0013 [Vibrio cholerae O395]
gi|153216285|ref|ZP_01950378.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|262167145|ref|ZP_06034859.1| hypothetical protein VIJ_000305 [Vibrio cholerae RC27]
gi|297580600|ref|ZP_06942526.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|121629137|gb|EAX61580.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|124114374|gb|EAY33194.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|146315803|gb|ABQ20342.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|227012314|gb|ACP08524.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|262024445|gb|EEY43132.1| hypothetical protein VIJ_000305 [Vibrio cholerae RC27]
gi|297535016|gb|EFH73851.1| conserved hypothetical protein [Vibrio cholerae RC385]
Length = 236
Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats.
Identities = 81/231 (35%), Positives = 113/231 (48%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVNT E KSGI P Q L + L + GLM IP + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFS 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|291522267|emb|CBK80560.1| pyridoxal phosphate enzyme, YggS family [Coprococcus catus GD/7]
Length = 230
Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 113/230 (49%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + ++ ++ + A R +D V+L+AVSK I L+ G + + ENK+QE
Sbjct: 2 LTENVIEVEKHVQAACDRAGRSRDEVTLIAVSKTKPVSDIEEVLTTGILDYGENKVQELS 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L K +++ IG LQ NKV ++ +I +V + A + E K +PV
Sbjct: 62 DKYEVLPK--NIRWHMIGHLQRNKVKYLIGKVVLIHSVDSLRLAEQIEHEAAKADIVMPV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
I+VN E K G V + + + GLM I P NP+ +F L +
Sbjct: 120 LIEVNVAEEESKFGTTSEAAMQLVEAVSKLPHIKIRGLMTIAPFTDNPEDNRIYFRKLKQ 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + +LSMGMT D+E+AI GAT VR+G+GIFG+R Q
Sbjct: 180 LSVDIKSKNIDNVDMDELSMGMTGDYEVAIEEGATMVRVGTGIFGKRNYQ 229
>gi|332981918|ref|YP_004463359.1| alanine racemase domain-containing protein [Mahella australiensis
50-1 BON]
gi|332699596|gb|AEE96537.1| alanine racemase domain protein [Mahella australiensis 50-1 BON]
Length = 233
Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 119/231 (51%), Gaps = 13/231 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + K++I+ +A + R D + L+AV+K VD ++I+ A++ G EN++QE
Sbjct: 5 IASNIDRVKERIKKAAERSGRSVDDIVLIAVTKTVDVERIKAAVNYGIKDLGENRVQELT 64
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ + DV+ IG LQ+NKV I+ +I +V K + +R + +
Sbjct: 65 AKYPYISD--DVRWHMIGRLQTNKVKYIIDRVSLIHSVDSLKLLKEIDKRSEIANRMMDI 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
I+VN E K G+ DFV + ++GLM + P +P +P+F + E
Sbjct: 123 LIEVNVAGEASKGGVAVEDVIDFVKQSAVFENIRIKGLMTVAPQTDDPEIVRPYFAQMKE 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ ++ LSMGM+ DFE+AI G+ VRIG+ IFGERP T
Sbjct: 183 LSFKIEKLKLDNVEMKYLSMGMSGDFEVAIEEGSNMVRIGTAIFGERPINT 233
>gi|322420078|ref|YP_004199301.1| alanine racemase domain-containing protein [Geobacter sp. M18]
gi|320126465|gb|ADW14025.1| alanine racemase domain protein [Geobacter sp. M18]
Length = 231
Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats.
Identities = 85/229 (37%), Positives = 118/229 (51%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L+ +++I +A+ A R SV LVAVSK + I A +CGQ IF EN +QE
Sbjct: 4 MAERLRKIEERIAQAALRAGRDPQSVRLVAVSKTKPAAAIADAFACGQRIFGENYVQELV 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L +E + FIGSLQSNKV +I D+I +V R A + + + +
Sbjct: 64 GKQGELTQE--ISWHFIGSLQSNKVRQIAGRVDLIHSVDRSSLAREIDRQWGALGKVCDI 121
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+QVN E K G + D V Q L V GLM +PP +P +P+F L E
Sbjct: 122 LVQVNISREETKGGTSSEELLDLVREVAQLQHLRVRGLMTMPPFFDDPEGARPYFRRLRE 181
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ ++ +LSMGM+ DFE AI GAT VR+GS +FGER
Sbjct: 182 LAGEVAAAAIAGVEMRELSMGMSGDFEAAIEEGATLVRVGSALFGERQY 230
>gi|332991906|gb|AEF01961.1| alanine racemase domain-containing protein [Alteromonas sp. SN2]
Length = 228
Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats.
Identities = 77/225 (34%), Positives = 108/225 (48%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L +Q + + A RP +SV L+AVSK I A GQ F EN +QE
Sbjct: 3 TIAERLNSARQDVSLATANANRPPNSVKLLAVSKTKPVSDIMAAYEEGQRTFGENYIQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D++ IG +QSNK + FD +++V REK A L+ + + L
Sbjct: 63 VDKIQQLSALSDIEWHMIGPIQSNKTKIVAENFDWVQSVDREKIARRLNDQRPAEMAPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
V IQVN E KSG+ P + V ++ +L + GLM IP P L
Sbjct: 123 VCIQVNIDDEASKSGVKPEDVDELVRFITKQDKLCLRGLMAIPKANPDSHEQAQSLSALK 182
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ LS+GM+ D + AIA G+T VRIG+ IFG R
Sbjct: 183 ELFDRYHTNLTNFDTLSVGMSSDMQSAIAHGSTMVRIGTAIFGAR 227
>gi|295094847|emb|CBK83938.1| pyridoxal phosphate enzyme, YggS family [Coprococcus sp. ART55/1]
Length = 231
Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats.
Identities = 71/230 (30%), Positives = 109/230 (47%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKLQEA 61
L + K+ I + A R + V+L+AVSK I L V F ENK+QE
Sbjct: 2 LKENYEKVKENIVRACEKAGRSPEDVTLIAVSKTKPLSDIEELLSDTDAVDFGENKVQEL 61
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ + + V IG LQ+NKV IV +I +V A + E K +
Sbjct: 62 VDKYENVSR--PVNWHMIGHLQTNKVKYIVDKVCMIHSVDSLNLAKTIEKEAAKHDVTVN 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLS 178
+ I+VN E K G+ ++ + + + V+GLM I P + +P+ +F L
Sbjct: 120 ILIEVNVAQEETKFGLSCDEVLPLIQEIKDFPHIRVKGLMTIAPFVDDPEDNRVYFRKLK 179
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+++ ++ LSMGMT D+E+A+ GAT VR+G+GIFG R
Sbjct: 180 DLSLDIQSKSIDNIDMSVLSMGMTNDYEVAVEEGATLVRVGTGIFGARNY 229
>gi|229525152|ref|ZP_04414557.1| hypothetical protein VCA_002763 [Vibrio cholerae bv. albensis
VL426]
gi|229338733|gb|EEO03750.1| hypothetical protein VCA_002763 [Vibrio cholerae bv. albensis
VL426]
Length = 236
Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats.
Identities = 81/231 (35%), Positives = 112/231 (48%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ IE++ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAHIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVNT E KSGI P Q L + L + GLM IP + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|158521192|ref|YP_001529062.1| alanine racemase domain-containing protein [Desulfococcus
oleovorans Hxd3]
gi|158510018|gb|ABW66985.1| alanine racemase domain protein [Desulfococcus oleovorans Hxd3]
Length = 227
Score = 285 bits (730), Expect = 3e-75, Method: Composition-based stats.
Identities = 87/227 (38%), Positives = 118/227 (51%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +KL+ +++I+ + R +V LVAVSK +I A++ G EN +QEAK
Sbjct: 1 MKDKLEQIRERIQAATEACGRDPATVRLVAVSKTQPVSRIAEAIAAGATDLGENYIQEAK 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L V FIG LQSNK VSLFD I TV K A+ + K + +
Sbjct: 61 EKIESLAGH-SVCWHFIGHLQSNKAKIAVSLFDWIHTVDSVKLAAEIDKHAAKLGKVQKI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQVNTG E KSG+ P V + + V+GLM IPP +P +PHF L
Sbjct: 120 LIQVNTGQERSKSGVAPEDMAGLVTEISRFAHVTVQGLMAIPPFYADPEAVRPHFKKLRM 179
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + +LSMGM+ DF+ AIA GAT VRIG+ IFG R
Sbjct: 180 LRDAIEKQQIPNVVMEELSMGMSGDFDAAIAEGATMVRIGTAIFGAR 226
>gi|291546182|emb|CBL19290.1| pyridoxal phosphate enzyme, YggS family [Ruminococcus sp. SR1/5]
Length = 230
Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats.
Identities = 69/229 (30%), Positives = 111/229 (48%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L ++ I S R + V+L+AVSK + ++ A G +F ENK+QE
Sbjct: 2 VAENLAQVQKNINESCNKINRDPNEVTLIAVSKTKPVEMLKEAYDAGARVFGENKVQEIV 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ + DV+ IG LQ NKV IV +I +V + A + E K++ +P+
Sbjct: 62 DKYDQMPS--DVKWHMIGHLQRNKVKYIVDKVAMIHSVDSLRLAETIEKEAAKKAVIVPI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN E K G+ P + + + ++GLM I P + N + + + E+ +
Sbjct: 120 LIEVNVAQEESKFGLKPEEVLPLIEQIADFSHIRIKGLMTIAPYVDNAEENREIFRELKK 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ LSMGMT D+ +A+ GAT VR+G+GIFG R
Sbjct: 180 LSVDIAAKNINNVTMSVLSMGMTGDYMVAVQEGATMVRVGTGIFGARNY 228
>gi|163803737|ref|ZP_02197595.1| FkuA [Vibrio sp. AND4]
gi|159172456|gb|EDP57324.1| FkuA [Vibrio sp. AND4]
Length = 236
Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats.
Identities = 71/230 (30%), Positives = 106/230 (46%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +I + R SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITSQIRHDEQKYGRSPKSVKLLAVSKTKPDEAIVEAYQAGQEAFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K K + ++ FIG +QSNK + FD + T+ R K A L+ + + +
Sbjct: 63 VSKVQHFAKHYPDNRIEWHFIGPIQSNKSRPVAEHFDWVHTIDRAKIAQRLNDQRPNELK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG+ + + L + L + GLM IP + + +
Sbjct: 123 PLQVLIQVNTSGEESKSGVADAEIFELAELISRLPNLTLRGLMSIPANVPDYQSQLRAFK 182
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + + LSMGM+ D AI +G+T VRIG+ IFG R
Sbjct: 183 QLEKLKQKLAQQYSDVDTLSMGMSGDMGAAIEAGSTMVRIGTAIFGARDY 232
>gi|254226314|ref|ZP_04919905.1| conserved hypothetical protein [Vibrio cholerae V51]
gi|125621176|gb|EAZ49519.1| conserved hypothetical protein [Vibrio cholerae V51]
Length = 236
Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats.
Identities = 81/230 (35%), Positives = 113/230 (49%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVNT E KSGI P Q L + L + GLM IP + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDY 232
>gi|148980488|ref|ZP_01816085.1| Predicted enzyme with a TIM-barrel fold protein [Vibrionales
bacterium SWAT-3]
gi|145961213|gb|EDK26527.1| Predicted enzyme with a TIM-barrel fold protein [Vibrionales
bacterium SWAT-3]
Length = 234
Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 109/230 (47%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +I ++ R +SV L+AVSK I A GQV F EN +QE
Sbjct: 3 SIQQNIEQITSQIRSAEQKCGRAPESVQLLAVSKTKPIDAILEAALGGQVAFGENYVQEG 62
Query: 62 KKKWIPLRKE---WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K ++ +++ FIG +QSNK I F + +V R+K A L+ + +
Sbjct: 63 VDKVKHFSEQHSNLNLEWHFIGPIQSNKTRPIAESFQWVHSVDRDKIAQRLNDQRPSELP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVNT E KSG L L + GLM IP + + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGTSEESVFALAELISSLPNLTLRGLMSIPANVSDYQSQLNAFS 182
Query: 176 LLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+E+ A+ + LSMGM+ D + A+ +G+T VRIG+ IFG R
Sbjct: 183 QLAELKDKLAAKYPDIDTLSMGMSGDMDAAVEAGSTMVRIGTAIFGARDY 232
>gi|229519847|ref|ZP_04409281.1| hypothetical protein VIF_000361 [Vibrio cholerae TM 11079-80]
gi|229343135|gb|EEO08119.1| hypothetical protein VIF_000361 [Vibrio cholerae TM 11079-80]
Length = 236
Score = 285 bits (729), Expect = 4e-75, Method: Composition-based stats.
Identities = 81/231 (35%), Positives = 113/231 (48%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 IDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPMDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVNT E KSGI P Q L + L + GLM IP + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|330899348|gb|EGH30767.1| hypothetical protein PSYJA_18016 [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 228
Score = 285 bits (729), Expect = 5e-75, Method: Composition-based stats.
Identities = 79/224 (35%), Positives = 109/224 (48%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A+R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAAERDPTSVGLLAVSKTKPASDLREAYTAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L + FIG +QSNK I FD + +V R K A LS + + L
Sbjct: 63 LGKQLELSDLP-LCWHFIGPIQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
+ IQVN E KSG P +L + GLM IP +P F +
Sbjct: 122 ICIQVNVSGEASKSGCTPQDLPALAAAIIALPRLRLRGLMAIPEPTDDPAAQDASFAAVR 181
Query: 179 EIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 TLQEQLNLPLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|330963808|gb|EGH64068.1| hypothetical protein PSYAC_04056 [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 228
Score = 285 bits (729), Expect = 5e-75, Method: Composition-based stats.
Identities = 78/224 (34%), Positives = 106/224 (47%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ AKR SV L+ VSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAAKRDPASVGLLGVSKTKPAGDLREAYTAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L + FIG +QSNK I F + +V R K A LS + L
Sbjct: 63 LGKQLELADLP-LCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPAGLEPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+ IQVN E KSG P +L + GLM IP +P F +
Sbjct: 122 ICIQVNVSGEASKSGCAPQDLPALAAAISALPRLKLRGLMAIPEPTDDPAAQAASFAAVR 181
Query: 179 EIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 TLQEQLNLSLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|312883848|ref|ZP_07743565.1| TIM-barrel fold family protein [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368306|gb|EFP95841.1| TIM-barrel fold family protein [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 238
Score = 285 bits (729), Expect = 5e-75, Method: Composition-based stats.
Identities = 77/234 (32%), Positives = 110/234 (47%), Gaps = 13/234 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE R +D+V L+AVSK I A + GQ F EN +QE
Sbjct: 3 SIQQNIEQITSQIEAIKQKCHRTQDTVQLLAVSKTKPVDAILEAANAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K E +++ FIG +QSNK + F + +V++ K A L+ + +
Sbjct: 63 TEKVAYFASHHPELELEWHFIGPIQSNKSRYVAENFHWVHSVNKAKLAQRLNDQRPEGLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVNT E KSGI N+ L L + GLM IP N + F
Sbjct: 123 PLQVLIQVNTSGETSKSGINDNEIFSLAELISSLPNLTLRGLMSIPAQTSNYEEQLSAFG 182
Query: 176 LLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L+ + + K + LSMGM+ D + AI SG T VRIG+ IFG+R
Sbjct: 183 ELANLQQTLKNRFSNQQIDTLSMGMSGDMQAAIESGTTMVRIGTAIFGQRDYSN 236
>gi|89074107|ref|ZP_01160606.1| Predicted enzyme with a TIM-barrel fold [Photobacterium sp. SKA34]
gi|89050043|gb|EAR55569.1| Predicted enzyme with a TIM-barrel fold [Photobacterium sp. SKA34]
Length = 236
Score = 285 bits (729), Expect = 5e-75, Method: Composition-based stats.
Identities = 72/232 (31%), Positives = 102/232 (43%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + +I R DSV L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 SIKQNIAKVINQITLVTEKCGRAADSVQLLAVSKTKPVEAIEEAIAAGQYAFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + FIG +QSNK + FD + ++ R KTA L+ +
Sbjct: 63 VDKVNHFSGHPENNLLVWHFIGPIQSNKTRLVAEHFDWVHSIDRIKTAKRLNDQRPTSMA 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V +QVN+ E KSGI + + + GLM IP + F
Sbjct: 123 PLQVLLQVNSSAEATKSGITLAEVPALAAEIAAMPNIELRGLMSIPQPATDYDSQFATFK 182
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+A + + LSMGM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 ALADTLEQLKLTYPNVDTLSMGMSGDMEAAIAAGSTIVRIGTAIFGARDYGN 234
>gi|294634381|ref|ZP_06712918.1| pyridoxal phosphate enzyme, YggS family [Edwardsiella tarda ATCC
23685]
gi|291092189|gb|EFE24750.1| pyridoxal phosphate enzyme, YggS family [Edwardsiella tarda ATCC
23685]
Length = 280
Score = 284 bits (728), Expect = 5e-75, Method: Composition-based stats.
Identities = 80/230 (34%), Positives = 110/230 (47%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L +Q+I +A R +++L+AVSK I A++ GQ F EN +QE
Sbjct: 48 TIEHQLNAVRQRIARAAEQCGRDPHTITLLAVSKTKPIADIDAAIAAGQRAFGENYVQEG 107
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K R++ + FIG LQSNK + FD I T+ R K A L+ +
Sbjct: 108 VSKIQHYRQQPGETTLTWHFIGPLQSNKSRLVAEHFDWIHTIDRVKIAQRLNEQRPATLA 167
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVN E KSGI Q Q L + GLM IP +P +
Sbjct: 168 PLNVLIQVNISDEQSKSGIALEQVDALADAISQLPNLRLRGLMAIPAPEDDPARQLAVCR 227
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A R +L LS+GMT D E AIA+G+T VRIG+ IFG R
Sbjct: 228 RMAQALQTLQQRYPQLDTLSLGMTHDMEAAIAAGSTLVRIGTAIFGARDY 277
>gi|218710629|ref|YP_002418250.1| hypothetical protein VS_2683 [Vibrio splendidus LGP32]
gi|218323648|emb|CAV19942.1| Hypothetical protein VS_2683 [Vibrio splendidus LGP32]
Length = 238
Score = 284 bits (728), Expect = 5e-75, Method: Composition-based stats.
Identities = 75/232 (32%), Positives = 108/232 (46%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +I ++ R DSV L+AVSK I A GQV F EN +QE
Sbjct: 3 SIQQNIEQITSQIRSAEQKCGRAPDSVQLLAVSKTKPIDAILEAALGGQVAFGENYVQEG 62
Query: 62 KKKWIPLRKE---WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K ++ +++ FIG +QSNK I F + +V R+K A L + +
Sbjct: 63 VDKVKHFSEQHSNLNLEWHFIGPIQSNKTRPIAESFQWVHSVDRDKIAQRLHDQRPNELP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFY 175
L V IQVNT E KSG L L + GLM IP + + + F
Sbjct: 123 PLQVLIQVNTSGEDSKSGTSEETVFALAELISSLPNLTLRGLMSIPANVSDYQSQLKAFS 182
Query: 176 LLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L+E+ A+ + LSMGM+ D + A+ +G+T VRIG+ IFG R
Sbjct: 183 QLAELQQKLAAKYPDIDTLSMGMSGDMDAAVEAGSTMVRIGTAIFGARDYAN 234
>gi|260438390|ref|ZP_05792206.1| pyridoxal phosphate enzyme, YggS family [Butyrivibrio crossotus DSM
2876]
gi|292808976|gb|EFF68181.1| pyridoxal phosphate enzyme, YggS family [Butyrivibrio crossotus DSM
2876]
Length = 230
Score = 284 bits (728), Expect = 5e-75, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 116/230 (50%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L+ +++EN+A A R + ++L+AVSK + I+ G F ENK+QE
Sbjct: 2 VTDNLKKVIERMENAAKRAGRNPEDITLIAVSKTKPVELIKQVYDAGIREFGENKVQEID 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L K D++ IG LQ NKV ++ +I +V + A +S + +PV
Sbjct: 62 RKSEILPK--DIKWHMIGHLQRNKVKTVIKEACLIHSVDSIRLAEQISKDAATLGISVPV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
++VN E K G +T+ ++ + + V GLM P NP+ +F L +
Sbjct: 120 LLEVNIACEESKYGFKAEETEAALVEIAKLPNITVRGLMTSAPITDNPEDNRIYFKALKQ 179
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + K + LSMGMT DFE+A+ GAT +R+G+ IFGER
Sbjct: 180 LCVDLKAKNIDNTSMDFLSMGMTGDFEVAVEEGATHIRVGTAIFGERDYS 229
>gi|121590705|ref|ZP_01678037.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|153819160|ref|ZP_01971827.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|153826571|ref|ZP_01979238.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|227080671|ref|YP_002809222.1| hypothetical protein VCM66_0446 [Vibrio cholerae M66-2]
gi|229507099|ref|ZP_04396605.1| hypothetical protein VCF_002321 [Vibrio cholerae BX 330286]
gi|298501008|ref|ZP_07010809.1| YggS family pyridoxal phosphate enzyme [Vibrio cholerae MAK 757]
gi|121547436|gb|EAX57545.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|126510305|gb|EAZ72899.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|149739663|gb|EDM53877.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|227008559|gb|ACP04771.1| conserved hypothetical protein [Vibrio cholerae M66-2]
gi|229355844|gb|EEO20764.1| hypothetical protein VCF_002321 [Vibrio cholerae BX 330286]
gi|297540256|gb|EFH76316.1| YggS family pyridoxal phosphate enzyme [Vibrio cholerae MAK 757]
Length = 236
Score = 284 bits (728), Expect = 5e-75, Method: Composition-based stats.
Identities = 81/231 (35%), Positives = 113/231 (48%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVNT E KSGI P Q L + L + GLM IP + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFS 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKHPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|170739698|ref|YP_001768353.1| alanine racemase domain-containing protein [Methylobacterium sp.
4-46]
gi|168193972|gb|ACA15919.1| alanine racemase domain protein [Methylobacterium sp. 4-46]
Length = 227
Score = 284 bits (728), Expect = 5e-75, Method: Composition-based stats.
Identities = 100/214 (46%), Positives = 129/214 (60%), Gaps = 1/214 (0%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
+ +I +A +R ++V+LVAVSK V ++ I AL GQ +F EN +QEA+ KW L
Sbjct: 13 TVRAEIARAARDHERDPNAVALVAVSKTVPAEGIVPALEAGQRLFGENYVQEARAKWPAL 72
Query: 69 RKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
R DV+L IG LQSNK E V LFDVI ++ R A+ LS E+ + R + +QVN
Sbjct: 73 RARYPDVELHMIGPLQSNKAREAVELFDVIHSLDRSSLAASLSREIARTGRRPRLLVQVN 132
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLT 187
TG E QK G+ P F+ CR + L +EGLMCIPPA P HF LL+ IA L
Sbjct: 133 TGDEPQKGGVSPAAADAFLAECRDAHGLTIEGLMCIPPAEDPPSAHFALLARIAARHGLA 192
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
LSMGM+ D+ AI GAT VR+GS IFG RP +
Sbjct: 193 VLSMGMSADYPAAIQMGATHVRVGSAIFGARPAK 226
>gi|332162811|ref|YP_004299388.1| hypothetical protein YE105_C3191 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318604348|emb|CBY25846.1| hypothetical protein YggS, proline synthase co-transcribed
bacterial homolog PROSC [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325667041|gb|ADZ43685.1| hypothetical protein YE105_C3191 [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330859001|emb|CBX69359.1| UPF0001 protein yggS [Yersinia enterocolitica W22703]
Length = 231
Score = 284 bits (728), Expect = 5e-75, Method: Composition-based stats.
Identities = 74/228 (32%), Positives = 106/228 (46%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + KI +A R + V+L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIEQNLQDVRAKIAAAARNCGRSPEEVTLLAVSKTKSVSAIEEAIAAGQYAFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + ++ FIG LQSNK + F TV R K A LS + +
Sbjct: 63 VDKIHYFAESAHASQLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPPEMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L + IQVN E KSGI + + L++ GLM IP + + +
Sbjct: 123 ALNILIQVNISDEQSKSGITLAELPALAASISELPHLHLRGLMAIPAPETDYQRQLAVFE 182
Query: 179 EIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + ++ LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 183 QMNQAFLTLKASYPQMDTLSMGMTDDMVAAIAAGSTLVRIGTAIFGSR 230
>gi|148265705|ref|YP_001232411.1| alanine racemase domain-containing protein [Geobacter
uraniireducens Rf4]
gi|146399205|gb|ABQ27838.1| alanine racemase domain protein [Geobacter uraniireducens Rf4]
Length = 237
Score = 284 bits (728), Expect = 6e-75, Method: Composition-based stats.
Identities = 83/229 (36%), Positives = 119/229 (51%), Gaps = 13/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ ++I +A+ A R SV LVAVSK D+ + A GQ +F EN +QE
Sbjct: 1 MFIADNLKFIHERIAAAALKAGRDPASVLLVAVSKTRDASAVDDAARSGQRLFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + + V FIG LQSNKV +I L ++I +V R A + + + +
Sbjct: 61 LVTKAAQVSE--SVAWHFIGGLQSNKVRQIAGLVEMIHSVDRLSLAREIDRQWGRLGKTC 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V IQVN E K G V L ++GLM +PP +P +P+F L
Sbjct: 119 NVLIQVNIACEASKCGANSADVLGLVRNVAALPHLRIKGLMTMPPFFDDPEGARPYFREL 178
Query: 178 SEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + ++T+LSMGM+ DFE+AIA GAT VR+GS IFGER
Sbjct: 179 KRLSELVAAERILKVEMTELSMGMSGDFEVAIAEGATLVRVGSAIFGER 227
>gi|86146413|ref|ZP_01064737.1| Predicted enzyme with a TIM-barrel fold [Vibrio sp. MED222]
gi|85835892|gb|EAQ54026.1| Predicted enzyme with a TIM-barrel fold [Vibrio sp. MED222]
Length = 238
Score = 284 bits (727), Expect = 6e-75, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 105/232 (45%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +I ++ R DSV L+AVSK I A GQV F EN +QE
Sbjct: 3 SIQQNIEQITSQIRSAEQKCGRAPDSVQLLAVSKTKPIDAILEAALGGQVAFGENYVQEG 62
Query: 62 KKKWIPLRKE---WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K ++ +++ FIG +QSNK I F + +V R+K A L + +
Sbjct: 63 VDKVKHFSEQHSNLNLEWHFIGPIQSNKTRPIAESFQWVHSVDRDKIAQRLHDQRPNELP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG L L + GLM IP + + + S
Sbjct: 123 PLQVLIQVNTSGEDSKSGTSEETVFALAELISSLPNLTLRGLMSIPANVSDYQSQLKAFS 182
Query: 179 EIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++A + LSMGM+ D + A+ +G+T VRIG+ IFG R
Sbjct: 183 QLADLQQKLAAKYPDIDTLSMGMSGDMDAAVEAGSTMVRIGTAIFGARDYAN 234
>gi|26991770|ref|NP_747195.1| alanine racemase domain protein [Pseudomonas putida KT2440]
gi|24986880|gb|AAN70659.1|AE016710_4 conserved hypothetical protein [Pseudomonas putida KT2440]
Length = 228
Score = 284 bits (727), Expect = 6e-75, Method: Composition-based stats.
Identities = 78/226 (34%), Positives = 101/226 (44%), Gaps = 6/226 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + L +I ++A R SV L+AVSK + IR + G F EN LQEA
Sbjct: 3 TLADNLSAISARIASAAQAVGRDPASVQLLAVSKTKPASAIREIHAAGVHDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + FIG +QSNK I FD + +V R K A LS + L
Sbjct: 63 LTKQQALSDLPLI-WHFIGPIQSNKTKAIAEHFDWVHSVDRLKIAQRLSEQRPAGLAPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
+ +QVN E KSG P L + GLM IP + + F L
Sbjct: 122 ICLQVNVSGEDSKSGCTPADLPALAKAVAALPNLRLRGLMAIPEPTEDRATQEAAFASLR 181
Query: 179 EIAR--ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 KLQEGLGLGLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDYGN 227
>gi|330972631|gb|EGH72697.1| hypothetical protein PSYAR_19276 [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 228
Score = 284 bits (727), Expect = 7e-75, Method: Composition-based stats.
Identities = 79/224 (35%), Positives = 109/224 (48%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A+R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAAERDPASVGLLAVSKTKPASDLREAYNAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L + FIG +QSNK I FD + +V R K A LS + + L
Sbjct: 63 LGKQLELSDLP-LCWHFIGPIQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
+ IQVN E KSG P +L + GLM IP +P F +
Sbjct: 122 ICIQVNVSGEASKSGCTPQDLPALAAAIIALPRLRLRGLMAIPEPTDDPAAQDASFAAVR 181
Query: 179 EIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 ALQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|158421901|ref|YP_001523193.1| hypothetical protein AZC_0277 [Azorhizobium caulinodans ORS 571]
gi|158328790|dbj|BAF86275.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
Length = 238
Score = 284 bits (727), Expect = 7e-75, Method: Composition-based stats.
Identities = 108/216 (50%), Positives = 143/216 (66%), Gaps = 1/216 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+L + IE + A R +++V+L+AVSK + +I ++ GQ +F EN++QE++ K
Sbjct: 20 ARLAGIQSAIEQACRDANRAREAVTLIAVSKTFGAAEIWPVIAAGQRVFGENRVQESQAK 79
Query: 65 WIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W LR + ++L IG LQSNK ++ V+LFDVI TV R K A L+ EM +Q R LPV+
Sbjct: 80 WPELRARQAGLELHLIGPLQSNKAADAVALFDVIHTVDRPKIAYALAEEMSRQGRRLPVF 139
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
IQVNTG E QK+GI+P F+ CR K L+V GLMCIPPA P PHF LL+EIAR
Sbjct: 140 IQVNTGAEPQKAGILPEAADAFIAECRDKAGLDVRGLMCIPPAEDVPAPHFALLAEIARH 199
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L LSMGM+ DFE+AI GAT VR+GS +FG RP
Sbjct: 200 NDLPGLSMGMSADFEVAIHQGATHVRVGSALFGSRP 235
>gi|163814074|ref|ZP_02205466.1| hypothetical protein COPEUT_00227 [Coprococcus eutactus ATCC 27759]
gi|158450523|gb|EDP27518.1| hypothetical protein COPEUT_00227 [Coprococcus eutactus ATCC 27759]
Length = 231
Score = 284 bits (727), Expect = 7e-75, Method: Composition-based stats.
Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKLQEA 61
L + + +I+N+ + R + V+L+AVSK I L + F ENK+QE
Sbjct: 2 LKENYEEVRSRIDNACVRTGRNPEDVTLIAVSKTKPLSDIEEILRDTKAIDFGENKVQEL 61
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ + + +V IG LQ+NKV IV +I +V A + E K + +
Sbjct: 62 VDKYENVSR--NVNWHMIGHLQTNKVKYIVDKVCMIHSVDSLNLAKTIEKEAAKHNVTVN 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLS 178
+ I+VN E K G+ + + + + V+GLM I P + +P+ +F L
Sbjct: 120 ILIEVNVAQEESKFGLACEEVLPLINEIKDFPHIRVKGLMTIAPFVDDPEDNRVYFRKLR 179
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+++ ++ LSMGMT D+E+A+ GAT VR+G+GIFG R
Sbjct: 180 DLSLDIQSKSIDNIDMSVLSMGMTNDYEVAVEEGATLVRVGTGIFGARNY 229
>gi|225419736|ref|ZP_03762039.1| hypothetical protein CLOSTASPAR_06074 [Clostridium asparagiforme
DSM 15981]
gi|225041626|gb|EEG51872.1| hypothetical protein CLOSTASPAR_06074 [Clostridium asparagiforme
DSM 15981]
Length = 227
Score = 284 bits (727), Expect = 8e-75, Method: Composition-based stats.
Identities = 66/229 (28%), Positives = 117/229 (51%), Gaps = 13/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +L+ ++++ + + A R SV+L+AVSK ++ ++ A G F ENK+QE
Sbjct: 1 MMIKEQLEEVRERVNAACLRAGRDPKSVTLIAVSKTKPAQAVQEAYEAGARDFGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L + D++ IG LQ NKV +++ +I V + A + E K++ +
Sbjct: 61 ILQKQPALPQ--DIRWHMIGHLQRNKVHQVIGKAVLIHAVDSLRLAEQIEQEAAKRNLDV 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +++N E K G ++ + ++++GLM I P + NP+ + + ++
Sbjct: 119 DVLLEINVAKEESKYGFFLEDAEEAIRQISSLPHVHIKGLMTIAPFVENPEENRGIFQKL 178
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + LSMGM+ DFE+AI GAT VR+G+ IFG R
Sbjct: 179 YQFSVDINDKNIDNVTMGVLSMGMSGDFEVAIEEGATMVRVGTSIFGAR 227
>gi|261868167|ref|YP_003256089.1| succinyl-diaminopimelate desuccinylase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261413499|gb|ACX82870.1| succinyl-diaminopimelate desuccinylase [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 231
Score = 283 bits (726), Expect = 8e-75, Method: Composition-based stats.
Identities = 75/228 (32%), Positives = 112/228 (49%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ+ +QKI + +V+L+AVSK + I A GQ F EN +QE
Sbjct: 3 NIRRNLQLVQQKITQICQMVGSSPSAVTLLAVSKTKPVEDILTAYEAGQEAFGENYVQEG 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ +++ FIG LQSNK + FD ++T+ R K A L+ + L
Sbjct: 63 VEKIQFCQQHNINLEWHFIGPLQSNKTRLVAEYFDWMQTLDRAKIADRLNEQRSPHKAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
V IQVN E KSGI P + D L + GLM IP + + FY +
Sbjct: 123 NVLIQVNISNEASKSGIQPCEILDLAKHLENLPHLCLRGLMAIPEPTNDVTRQEQVFYQM 182
Query: 178 SEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + ++ LSMGMT D ++AI G+T VR+G+ IFG+R
Sbjct: 183 RVLFEQLQQALPNAQIDTLSMGMTDDMQMAIKCGSTMVRVGTAIFGKR 230
>gi|254719796|ref|ZP_05181607.1| hypothetical protein Bru83_09663 [Brucella sp. 83/13]
gi|265984815|ref|ZP_06097550.1| alanine racemase domain-containing protein [Brucella sp. 83/13]
gi|306839492|ref|ZP_07472300.1| conserved hypothetical protein [Brucella sp. NF 2653]
gi|264663407|gb|EEZ33668.1| alanine racemase domain-containing protein [Brucella sp. 83/13]
gi|306405437|gb|EFM61708.1| conserved hypothetical protein [Brucella sp. NF 2653]
Length = 226
Score = 283 bits (726), Expect = 8e-75, Method: Composition-based stats.
Identities = 116/224 (51%), Positives = 150/224 (66%), Gaps = 2/224 (0%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++Q
Sbjct: 1 MSDVVANLNAVKAVIARAEKEARRKNGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW LR+ W ++L IG LQSNK ++ V+LFDVIETV REK A+ L+ E+ KQ +
Sbjct: 61 EAQGKWPALREAWAGIELHLIGPLQSNKAADAVALFDVIETVDREKIAAALASEIRKQGK 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL
Sbjct: 121 SPKLYVQVNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLE 180
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ARE + KLSMGM+ D+E AI GATSVR+GS IFG R
Sbjct: 181 KLAREAHVEKLSMGMSGDYETAIGFGATSVRVGSAIFGGRAYSA 224
>gi|296133623|ref|YP_003640870.1| alanine racemase domain protein [Thermincola sp. JR]
gi|296032201|gb|ADG82969.1| alanine racemase domain protein [Thermincola potens JR]
Length = 230
Score = 283 bits (726), Expect = 8e-75, Method: Composition-based stats.
Identities = 75/227 (33%), Positives = 114/227 (50%), Gaps = 14/227 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ ++ I +A + R + + L+AVSK V + I+ A G F EN++QE
Sbjct: 5 LRTNLEQIRRNINEAAYKSGRKPEDIKLIAVSKTVPMETIKAAWEMGVTDFGENRVQELT 64
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ L + + IG LQ NKV IV +I ++ A ++ + + + L V
Sbjct: 65 EKFNELPE---AKWHLIGHLQKNKVKYIVDKVVLIHSLDSYPLAEEINKRAVARGKCLDV 121
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQVN E K G+ ++ DF+ + L V+GLM I P +G+P +P F L +
Sbjct: 122 LIQVNVAREPTKFGLDLSEVDDFINAVKDLPGLAVKGLMTIAPFVGDPEAVRPVFRELKK 181
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K + LSMGM+ D+ +AI GA VRIG+ IFGER
Sbjct: 182 KFDALKTMEIPSAEMKYLSMGMSNDYRIAIEEGANLVRIGTRIFGER 228
>gi|95929070|ref|ZP_01311815.1| Protein of unknown function UPF0001 [Desulfuromonas acetoxidans DSM
684]
gi|95134971|gb|EAT16625.1| Protein of unknown function UPF0001 [Desulfuromonas acetoxidans DSM
684]
Length = 230
Score = 283 bits (726), Expect = 9e-75, Method: Composition-based stats.
Identities = 79/231 (34%), Positives = 122/231 (52%), Gaps = 15/231 (6%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
MS + + L+ +Q+I + + R + L+AVSK + I ALS GQ +F E+ +
Sbjct: 1 MSVEIAHNLETIQQRITAACLRCGRDPQDIQLIAVSKKKPVELIEAALSAGQTLFGESYV 60
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QE K + V+ FIG+LQSNKV + ++I +V R A ++ + K
Sbjct: 61 QEFIDKHQVV--TGPVRWHFIGALQSNKVKYLAGKTELIHSVDRLSLAKEINKQWGKADD 118
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFY 175
+ +QVN G E K+G+ ++ ++ V + L+VEGLM +PP N +P F
Sbjct: 119 VARILVQVNVGDEASKAGVPVDKAEELVRQLSELPHLHVEGLMALPPYADNLEQVRPWFR 178
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL E+A + + LSMGM+ DFE+AI GAT +R+G+ IFG R
Sbjct: 179 LLRELAEKIDTLNLPNVSMATLSMGMSHDFEIAIEEGATLIRVGTAIFGAR 229
>gi|227325976|ref|ZP_03830000.1| putative alanine racemase [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 237
Score = 283 bits (726), Expect = 1e-74, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 109/232 (46%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ +Q+I +A R + ++L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDIRQQIATAAAHCARAPEEITLLAVSKTKPVSAIEEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K ++ + ++ FIG LQSNK + FD TV R + A LS +
Sbjct: 63 VEKIHYFQENHPDTPLEWHFIGPLQSNKSRLVAENFDWFHTVDRLRIAQRLSEQRPATLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V +Q+N E KSGIM ++ + L + GLM IP + + +
Sbjct: 123 PLNVLLQINISGEPSKSGIMVDELAELAASVAALPNLRLRGLMAIPAPETDYEQQLAVFK 182
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ A + LSMGMT D AI +G+T VRIG+ IFG R
Sbjct: 183 QMAVLFQTLSANHPHIDTLSMGMTDDMRAAITAGSTLVRIGTAIFGARDYSA 234
>gi|167036133|ref|YP_001671364.1| alanine racemase domain-containing protein [Pseudomonas putida
GB-1]
gi|166862621|gb|ABZ01029.1| alanine racemase domain protein [Pseudomonas putida GB-1]
Length = 228
Score = 283 bits (726), Expect = 1e-74, Method: Composition-based stats.
Identities = 79/226 (34%), Positives = 102/226 (45%), Gaps = 6/226 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + L +I ++A A R SV L+AVSK + IR + G F EN LQEA
Sbjct: 3 TLADNLSAISARIASAAQAAGRDPASVQLLAVSKTKPASAIREIHTAGVRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + FIG +QSNK I FD + +V R K A LS + L
Sbjct: 63 LTKQQELSDLPLI-WHFIGPIQSNKTKAIAEHFDWVHSVDRLKIAQRLSEQRPAGLAPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
+ +QVN E KSG P L + GLM IP + + F L
Sbjct: 122 LCLQVNVSGEDSKSGCAPADLPALAKAVAGLPNLRLRGLMAIPEPTDDRAAQEAAFAHLR 181
Query: 179 EIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 QLQENLGLDLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDYGN 227
>gi|291618773|ref|YP_003521515.1| YggS [Pantoea ananatis LMG 20103]
gi|291153803|gb|ADD78387.1| YggS [Pantoea ananatis LMG 20103]
gi|327395106|dbj|BAK12528.1| hypothetical UPF0001 protein YggS [Pantoea ananatis AJ13355]
Length = 235
Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats.
Identities = 75/227 (33%), Positives = 110/227 (48%), Gaps = 8/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +Q+I +A R + ++L+AVSK + + A + GQ+ F EN +QE
Sbjct: 3 SIQHNLQQVRQRIAAAATRCGRSPEEITLLAVSKTKPASAVEEAAAAGQIDFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L + FIG LQSNK + F TV R+K A L+ + + L
Sbjct: 63 VEKIQSLTSHPALTWHFIGPLQSNKSRLVAEHFAWCHTVDRQKIAQRLNDQRPEHLPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQVN E KSGIM +L + GLM IP + + + ++A
Sbjct: 123 VLIQVNISDENSKSGIMLEAVAGLAQDILTMPRLRLRGLMAIPAPEEDYQRQLAVCQQMA 182
Query: 182 --------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 DAFDQLKQQYSDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 229
>gi|170718483|ref|YP_001783697.1| alanine racemase [Haemophilus somnus 2336]
gi|168826612|gb|ACA31983.1| alanine racemase domain protein [Haemophilus somnus 2336]
Length = 244
Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 111/229 (48%), Gaps = 11/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + N L ++I AKR +VSL+AVSK + I +A GQ F EN +QE
Sbjct: 15 MQIKNNLAKINRQISQYCEQAKRHSSTVSLLAVSKTKPVEDILIAYQAGQTAFGENYVQE 74
Query: 61 AKKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + ++ FIG LQSNK + FD ++T+ REK A+ L+ + +
Sbjct: 75 GVEKIQYFIEQHIQLEWHFIGPLQSNKTKLVAENFDWMQTLDREKIATRLNEQRPHYKQP 134
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
L V IQ+N E KSGI P + + L + GLM IP N + F
Sbjct: 135 LNVLIQINISAENSKSGIQPQEMLILAKHIQNLPHLRLRGLMAIPEPTDNITAQEQAFNQ 194
Query: 177 LSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + K+ LSMGM+ D AI G+T VRIG+ IFG+R
Sbjct: 195 MKYLFTQLQLAFPDEKIDTLSMGMSDDMASAIKCGSTMVRIGTAIFGKR 243
>gi|157960955|ref|YP_001500989.1| alanine racemase domain-containing protein [Shewanella pealeana
ATCC 700345]
gi|157845955|gb|ABV86454.1| alanine racemase domain protein [Shewanella pealeana ATCC 700345]
Length = 233
Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats.
Identities = 80/229 (34%), Positives = 117/229 (51%), Gaps = 9/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + + +I +A + R + V L+AVSK + +I A GQ F EN +QE
Sbjct: 3 TITDRLAIAQSRIAQAAQNSSRRAEDVQLLAVSKTKPNNQIIEAYHAGQRRFGENYVQEG 62
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L ++ D++ FIG LQSNK + +LFD + TV REK A L+ + +
Sbjct: 63 ESKVNALSEDYPDIEWHFIGPLQSNKTKVVATLFDWMHTVEREKIAQRLNEQRPDSMPPI 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
V IQVN E KSG+ N+ Q L + GLM IP A + + L
Sbjct: 123 NVCIQVNISQEASKSGVAANEILALADKIAQMPNLTLRGLMAIPSADVDEQTATDEMAAL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + LS+GM+ D ELA+A G+T VRIGS IFGER
Sbjct: 183 QALYNQLAQRFDYVDTLSVGMSNDLELAVAHGSTMVRIGSAIFGERDYS 231
>gi|330446899|ref|ZP_08310550.1| alanine racemase, N-terminal domain protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328491090|dbj|GAA05047.1| alanine racemase, N-terminal domain protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 236
Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 102/231 (44%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + +I + R DSV L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 SIKQNIAEVIHQITLATEKCGRAADSVQLLAVSKTKPVEAIEEAIAAGQYAFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + FIG +QSNK + FD + ++ R KTA LS +
Sbjct: 63 VDKVNHFSTHSAKNLLVWHFIGPIQSNKTRLVAEHFDWVHSIDRVKTAKRLSDQRPANMA 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V +QVN+ E KSG+ + + + GLM IP + F
Sbjct: 123 PLQVLLQVNSNDEETKSGVSLAELPALAAEIAAMPNIELRGLMSIPQPATDFDSQFATFK 182
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ ++ LSMGM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 TLSDALEQLKTTYPQVDTLSMGMSDDMEAAIAAGSTIVRIGTAIFGARDYS 233
>gi|170750500|ref|YP_001756760.1| alanine racemase domain-containing protein [Methylobacterium
radiotolerans JCM 2831]
gi|170657022|gb|ACB26077.1| alanine racemase domain protein [Methylobacterium radiotolerans JCM
2831]
Length = 250
Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats.
Identities = 94/218 (43%), Positives = 129/218 (59%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + I +A ++R + LVAVSK V ++ I AL G +F EN +QE+
Sbjct: 29 DVAAGLAEVRAAIARAAEDSERDPAEIQLVAVSKTVPAEGILPALKAGHRVFGENYVQES 88
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KW LR DV+L +G LQSNK E V+LFDVI ++ R A+ L+ E+ + R
Sbjct: 89 VAKWPGLRARFPDVELHLVGPLQSNKAREAVALFDVIHSLDRLSLAAALAKEIERSGRTP 148
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ IQVNTG E QK G++P+Q + CR+ + L ++GLMCIPPA P HF LL+ +
Sbjct: 149 KLLIQVNTGAEPQKGGVLPDQLATLLSECRETHGLAIQGLMCIPPAEDPPSAHFALLARL 208
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A+ L LSMGM+ DF AI GAT VR+G+ IFG R
Sbjct: 209 AKAHNLPILSMGMSADFPAAIQLGATHVRVGTAIFGAR 246
>gi|189423531|ref|YP_001950708.1| alanine racemase domain protein [Geobacter lovleyi SZ]
gi|189419790|gb|ACD94188.1| alanine racemase domain protein [Geobacter lovleyi SZ]
Length = 228
Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats.
Identities = 79/230 (34%), Positives = 118/230 (51%), Gaps = 14/230 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L + +I+ + ++ R +V LVAVSK+ + + A + GQ +F EN +QE
Sbjct: 1 MSVTGNLAAVQARIQRACTISGRAPSTVRLVAVSKLHPAALVAEAAAAGQTVFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE-MIKQSRF 119
K L + V+ IG LQSNKV + + +I TV R A + + KQS
Sbjct: 61 LVDKAAQLAR--PVEWHMIGHLQSNKVKYLPGIVSMIHTVDRLSLAQEIDRQWRDKQSAA 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ +QVN E KSG + + V + + V GLM +PP +P +P+F
Sbjct: 119 CDILVQVNVSGEATKSGTTATEAVELVRHIAKLPNVRVRGLMTMPPFFDDPEAARPYFRE 178
Query: 177 LSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +A ++T+LSMGM+ DFE+AI GAT VR+G+ IFG R
Sbjct: 179 LRLLADRISSEQIPAVEMTELSMGMSGDFEVAIEEGATLVRVGTAIFGGR 228
>gi|326203530|ref|ZP_08193394.1| alanine racemase domain protein [Clostridium papyrosolvens DSM
2782]
gi|325986350|gb|EGD47182.1| alanine racemase domain protein [Clostridium papyrosolvens DSM
2782]
Length = 235
Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats.
Identities = 70/230 (30%), Positives = 111/230 (48%), Gaps = 13/230 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L +I+ +A + R + + L+AV+K V+ +IR G F EN++QE
Sbjct: 5 TIKQNLDDIYTRIKAAAEKSGRKAEDIKLIAVTKTVEVDRIRNVSEYGVPDFGENRVQEL 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ + + IG LQ+NKV I+ +I +V + A + K + +
Sbjct: 65 LEKYDKFDEAT--KWHLIGHLQTNKVKYIIDKVHMIHSVDSFELAKEIDNRAGKTGKKMN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+ +QVN E K GI P + ++V + L + G+M I P N +P F L
Sbjct: 123 ILLQVNVSGEETKFGIRPEEVNEYVEYISRLKNLLLRGMMTIAPFADNTQEIRPIFKNLY 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+I + LSMGM+ DFE+AI GA VRIG+GIFG+R
Sbjct: 183 DIFIDIKNKRIDNVSMDYLSMGMSNDFEVAIEEGANIVRIGTGIFGKRNY 232
>gi|190149320|ref|YP_001967845.1| hypothetical protein APP7_0051 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307244852|ref|ZP_07526951.1| hypothetical protein appser1_660 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307253806|ref|ZP_07535660.1| hypothetical protein appser9_660 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307258262|ref|ZP_07540005.1| hypothetical protein appser11_670 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|189914451|gb|ACE60703.1| hypothetical protein APP7_0051 [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|306854297|gb|EFM86503.1| hypothetical protein appser1_660 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306863290|gb|EFM95230.1| hypothetical protein appser9_660 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306867722|gb|EFM99567.1| hypothetical protein appser11_670 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 227
Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 111/229 (48%), Gaps = 10/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L KQ+I+ + R +V L+AVSK + I A++ GQ F EN +QE
Sbjct: 1 MSISQNLSEIKQQIQQISQQCGRD--NVRLLAVSKTKPVEAIEEAIAAGQTAFGENYVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ +++ FIG LQSNK + FD I+TV R K A LS++ L
Sbjct: 59 GVEKIAYFAQQPNLEWHFIGPLQSNKTRLVAENFDWIQTVDRLKIAERLSVQRSANKAPL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQ+N E KSGI P + + Q L + GLM IP P+ +
Sbjct: 119 NVLIQINISDEASKSGIQPEELDELAKAISQLPNLRLRGLMAIPKPESEPEQQKIALRKM 178
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + + LSMGM+ D AI G+T VRIG+ IFG R
Sbjct: 179 QQLFDRLQDEFEGIDTLSMGMSDDMAAAIECGSTMVRIGTAIFGTRYYS 227
>gi|306841587|ref|ZP_07474284.1| conserved hypothetical protein [Brucella sp. BO2]
gi|306288333|gb|EFM59696.1| conserved hypothetical protein [Brucella sp. BO2]
Length = 226
Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats.
Identities = 116/224 (51%), Positives = 150/224 (66%), Gaps = 2/224 (0%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++Q
Sbjct: 1 MSDVVANLNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW LR+ W ++L IG LQSNK ++ V+LFDVIETV REK A+ L+ E+ KQ +
Sbjct: 61 EAQGKWPALREAWAGIELHLIGPLQSNKAADAVALFDVIETVDREKIAAALASEIRKQGK 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL
Sbjct: 121 SPKLYVQVNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLE 180
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ARE + KLSMGM+ D+E AI GATSVR+GS IFG R
Sbjct: 181 KLAREAHVEKLSMGMSGDYETAIGFGATSVRVGSAIFGGRAYSA 224
>gi|240146310|ref|ZP_04744911.1| pyridoxal phosphate enzyme, YggS family [Roseburia intestinalis
L1-82]
gi|257201551|gb|EEU99835.1| pyridoxal phosphate enzyme, YggS family [Roseburia intestinalis
L1-82]
gi|291536184|emb|CBL09296.1| pyridoxal phosphate enzyme, YggS family [Roseburia intestinalis
M50/1]
gi|291538951|emb|CBL12062.1| pyridoxal phosphate enzyme, YggS family [Roseburia intestinalis
XB6B4]
Length = 231
Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 116/230 (50%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L ++ IE + A R +D V+L+AVSK + ++ F ENK+QE
Sbjct: 2 LKENLANVEKNIEQACKNAGRSRDEVTLIAVSKTKPVEMLQEIYDENIRDFGENKVQELC 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L D++ IG LQ NKV IV ++I +V + A ++++ KQ+ +P+
Sbjct: 62 SKMEQLPS--DIRWHMIGHLQRNKVKYIVGKVELIHSVDTYRLAEEINIQAKKQNVIVPI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
++VN +E K GI V + + ++GLM I P + NP+ +F + +
Sbjct: 120 LVEVNIAHEESKFGISAEDAILLVEEISKLENIRIKGLMTIAPYVENPEDNRLYFRKIKQ 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + LSMGMT D+ +AI GAT VR+G+GIFGER +
Sbjct: 180 LSVDITNKNIDNVFMEILSMGMTGDYMVAIEEGATMVRVGTGIFGERNYK 229
>gi|209694136|ref|YP_002262064.1| membrane protein, related to K+ transport [Aliivibrio salmonicida
LFI1238]
gi|208008087|emb|CAQ78228.1| membrane protein, related to K+ transport [Aliivibrio salmonicida
LFI1238]
Length = 255
Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats.
Identities = 75/230 (32%), Positives = 107/230 (46%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + +IENS R DSV L+AVSK + + A+ GQ F EN +QE
Sbjct: 3 SIKQNIHQITLQIENSIQKCGRSPDSVQLLAVSKTKPIELLEQAIESGQHSFGENYVQEG 62
Query: 62 KKKWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K +K +++ FIG +QSNK I FD + ++ R K A L+ +
Sbjct: 63 VDKVHYFQKNHSNIELEWHFIGPIQSNKTRPIAEHFDWVHSIDRLKIAQRLNEQRPSDLG 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVN E KSG N+ L + GLM IP + N +
Sbjct: 123 ELNVLIQVNISSEDSKSGTTANEVMSLAAAIHAMPNLTLRGLMSIPANVSNYEEQLAAFK 182
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ A+ ++ LSMGM+ D + AI +G+T VRIG+ IFG R
Sbjct: 183 QLASIQNQLEAQYPQVDTLSMGMSGDIDAAIEAGSTMVRIGTAIFGARNY 232
>gi|109900019|ref|YP_663274.1| hypothetical protein Patl_3718 [Pseudoalteromonas atlantica T6c]
gi|109702300|gb|ABG42220.1| Protein of unknown function UPF0001 [Pseudoalteromonas atlantica
T6c]
Length = 227
Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats.
Identities = 76/225 (33%), Positives = 113/225 (50%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L++ + I S A RP +SV L+AV+K I A G +F EN +QE
Sbjct: 3 TIAERLKIALKTITQSVCDANRPANSVKLLAVTKTKPVSDIVQAYEAGHRLFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K LR+ D++ FIG LQSNK + FD + ++ R K A L+ + + L
Sbjct: 63 VGKIQQLRELSDIEWHFIGPLQSNKTRPVAENFDWVHSIDRLKIAQRLNDQRSAH-KKLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
V IQVN E K+G+ ++ L + GLM IP A N + +++
Sbjct: 122 VCIQVNVDNESSKAGVAVDEVSTLAEQISVMPNLALRGLMTIPKAQQNDGMQRKSLLVMN 181
Query: 179 EIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + ++ LSMGM+ D +LAI G+T VRIGS IFG R
Sbjct: 182 ELFLQLQTKYPQIDTLSMGMSNDMQLAIECGSTMVRIGSAIFGSR 226
>gi|261492832|ref|ZP_05989379.1| K+ uptake protein [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261494803|ref|ZP_05991281.1| K+ uptake protein [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261309514|gb|EEY10739.1| K+ uptake protein [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261311514|gb|EEY12670.1| K+ uptake protein [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 249
Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats.
Identities = 80/229 (34%), Positives = 112/229 (48%), Gaps = 10/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L Q+I+ + +R V L+AVSK + I+ A+ GQ F EN +QE
Sbjct: 23 MSIAENLSQIHQQIQQISQQHQRD--DVRLLAVSKTKPVEAIQEAIEGGQRAFGENYVQE 80
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K D++ FIG LQSNK + + FD I+TV R K A LS + L
Sbjct: 81 AIEKIECFANRSDLEWHFIGPLQSNKTKLVAAHFDWIQTVDRLKIAERLSEQRPIGKAPL 140
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQ+N E KSGI P++ Q L + GLM IP P+ F +
Sbjct: 141 NVLIQINISDEASKSGIEPDEMLSLAQAISQLPNLKLRGLMAIPKPESEPEQQKIAFCKM 200
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + + LSMGM+ D + AI G+T VRIG+ IFG R +
Sbjct: 201 QQLFHRLQAEFEGIDTLSMGMSDDMQAAIECGSTMVRIGTAIFGARDYR 249
>gi|46143323|ref|ZP_00135498.2| COG0325: Predicted enzyme with a TIM-barrel fold [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126207540|ref|YP_001052765.1| hypothetical protein APL_0052 [Actinobacillus pleuropneumoniae L20]
gi|307256072|ref|ZP_07537860.1| hypothetical protein appser10_780 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|126096332|gb|ABN73160.1| hypothetical protein APL_0052 [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|306865494|gb|EFM97389.1| hypothetical protein appser10_780 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 231
Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats.
Identities = 78/230 (33%), Positives = 111/230 (48%), Gaps = 10/230 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L KQ+I+ + R +V L+AVSK + I A++ GQ F EN +QE
Sbjct: 1 MSISQNLSEIKQQIQQISQQCGRD--NVRLLAVSKTKPVEAIEEAIAAGQTAFGENYVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ +++ FIG+LQSNK + FD I+TV R K A LS + L
Sbjct: 59 GVEKIAYFAQQPNLEWHFIGALQSNKTRLVAENFDWIQTVDRLKIAERLSAQRSANKAPL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQ+N E KSGI P + + Q L + GLM IP P+ +
Sbjct: 119 NVLIQINISDEASKSGIQPEELDELAKAISQLPNLRLRGLMAIPKPESEPEQQKIALRKM 178
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ + + LSMGM+ D AI G+T VRIG+ IFG R
Sbjct: 179 QQLFDRLQDEFEGIDTLSMGMSDDMAAAIECGSTMVRIGTAIFGARDYSA 228
>gi|332535496|ref|ZP_08411274.1| hypothetical protein PH505_cw00020 [Pseudoalteromonas haloplanktis
ANT/505]
gi|332035073|gb|EGI71589.1| hypothetical protein PH505_cw00020 [Pseudoalteromonas haloplanktis
ANT/505]
Length = 237
Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats.
Identities = 75/225 (33%), Positives = 110/225 (48%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L +I ++A +R + V+L+AVSK S+ I A GQ F E+ +QEA
Sbjct: 12 TIAERLTSAYARIADAAKNTQRNTNEVTLLAVSKTKPSEDIIAAYEHGQREFGESYVQEA 71
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L+ D+ FIG +QSNK + + + FD +++V R K A L + L
Sbjct: 72 IDKIAQLQSYSDIIWHFIGPIQSNKSALVAANFDWVQSVDRIKIAKRLDSQRPDDKPPLN 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
+ IQVN E KSG ++ + Q L + GLM IP F L
Sbjct: 132 ILIQVNISNEEAKSGCRRDEIDELADYINQCEHLTLRGLMAIPAKSDKLDTQIQSFEQLQ 191
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K + LSMGM+ D E AI++G+T VRIG+ IFG R
Sbjct: 192 TCFDKLKTQYPQVDTLSMGMSNDVEAAISAGSTMVRIGTDIFGTR 236
>gi|307262633|ref|ZP_07544263.1| hypothetical protein appser13_620 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|306872056|gb|EFN03770.1| hypothetical protein appser13_620 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 227
Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 111/229 (48%), Gaps = 10/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L KQ+I+ + R +V L+AVSK + I A++ GQ F EN +QE
Sbjct: 1 MSISQNLSEIKQQIQQISQQCGRD--NVRLLAVSKTKPVEAIEEAIAAGQTAFGENYVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ +++ FIG LQSNK + FD I+TV R K A LS++ L
Sbjct: 59 GVEKIAYFAQQPNLEWHFIGPLQSNKTRLVAENFDWIQTVDRLKIAERLSVQRSANKAPL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQ+N E KSGI P + + Q L + GLM IP P+ +
Sbjct: 119 NVLIQINISDEASKSGIQPEELDELAKAISQLPNLRLRGLMAIPKPESEPEQQKIALRKM 178
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + + LSMGM+ D AI G+T VRIG+ IFG R
Sbjct: 179 QKLFDRLQDEFEGIDTLSMGMSDDMAAAIECGSTMVRIGTAIFGTRYYS 227
>gi|304392701|ref|ZP_07374641.1| pyridoxal phosphate enzyme, YggS family [Ahrensia sp. R2A130]
gi|303295331|gb|EFL89691.1| pyridoxal phosphate enzyme, YggS family [Ahrensia sp. R2A130]
Length = 233
Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats.
Identities = 101/220 (45%), Positives = 142/220 (64%), Gaps = 1/220 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++ + ++ + +R + V+L+AVSK D+ I AL G +F EN++QE+
Sbjct: 12 AMRKQIDQVLEAVDVACRKVERRGEDVTLIAVSKTFDADAICPALEAGHRVFGENRVQES 71
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ KW LR E+ DV+L IG LQSNK ++ V LFDVI TV REK A L+ EM KQ +
Sbjct: 72 QGKWPELRAEFSDVELHLIGPLQSNKSADAVELFDVIHTVDREKIAKALAGEMKKQGKTP 131
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+++QVNTG E QK+GI P + FV CR ++ L +EGLMCIPPA NP PHF LL ++
Sbjct: 132 KLFVQVNTGEEPQKAGIAPKEAVAFVQRCRDEHGLEIEGLMCIPPADENPGPHFELLRKL 191
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
A E + LSMGM+ D+++A+ GAT VR+GS IFG R
Sbjct: 192 ADEADVNGLSMGMSGDYQVAVQFGATHVRVGSAIFGVRDY 231
>gi|307943451|ref|ZP_07658795.1| pyridoxal phosphate enzyme, YggS family [Roseibium sp. TrichSKD4]
gi|307773081|gb|EFO32298.1| pyridoxal phosphate enzyme, YggS family [Roseibium sp. TrichSKD4]
Length = 224
Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats.
Identities = 106/217 (48%), Positives = 138/217 (63%), Gaps = 1/217 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++L + ++ + R SV+L+AVSK ++ IR L GQ +F EN++QEA K
Sbjct: 7 DRLASVQAELRRAESDGNRENGSVTLIAVSKTFEANDIRPVLGAGQRVFGENRVQEAMGK 66
Query: 65 WIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W LR+E++ V+L IG LQSNK E V FDVI TV R+K A L EM KQ R LP +
Sbjct: 67 WPGLREEFEGVELHLIGPLQSNKAKEAVQTFDVIHTVDRQKIAKALKAEMDKQGRDLPCF 126
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVNTG E QK+GI P +T FV C+ +LN+ GLMCIPP P PHF LL EIA+
Sbjct: 127 VQVNTGEEPQKAGISPKETDAFVTFCQNDIRLNIVGLMCIPPVEEAPGPHFALLEEIAKR 186
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L +LSMGM+ D+E+A+ GAT VR+GS IFG R
Sbjct: 187 NSLKQLSMGMSSDYEIAVGFGATHVRVGSAIFGARDY 223
>gi|262191072|ref|ZP_06049279.1| hypothetical protein VIH_001443 [Vibrio cholerae CT 5369-93]
gi|262033048|gb|EEY51579.1| hypothetical protein VIH_001443 [Vibrio cholerae CT 5369-93]
Length = 236
Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats.
Identities = 81/231 (35%), Positives = 114/231 (49%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A GQ+ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQLYFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + ++ FIG LQSNK + FD + T+ REK A LS +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIDREKIALRLSEQRPVDMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFY 175
L V IQVNT E KSGI P Q L + L + GLM IP + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYSQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|310820636|ref|YP_003952994.1| hypothetical protein STAUR_3375 [Stigmatella aurantiaca DW4/3-1]
gi|309393708|gb|ADO71167.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
Length = 221
Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats.
Identities = 85/223 (38%), Positives = 118/223 (52%), Gaps = 6/223 (2%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + +L + ++ ++ RP +SV+L+AVSK+ IR A + GQ F EN Q
Sbjct: 1 MSQVAERLADIQARVASACARVGRPVESVTLIAVSKLKPGALIREAYAAGQRDFGENYAQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E + K L ++ IG LQ+NK + + + R + A LS ++
Sbjct: 61 ELRDKATELEDLAGLRWHAIGPLQTNKAKYVARVAQSFHALDRMEVARELSKRRLEA--P 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
LP Y++VN G E KSG+ P FV R L +EGLM +PP +P+ HF
Sbjct: 119 LPCYVEVNLGGEQSKSGLTPEALGAFVDEARVLPGLRLEGLMALPPPTPDPEQARGHFRR 178
Query: 177 LSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L E+ARE L+ LSMG T DFE AI GAT VR+G+ IFGER
Sbjct: 179 LRELAREHGLSGLSMGTTHDFEQAIEEGATLVRVGTAIFGERD 221
>gi|110635537|ref|YP_675745.1| hypothetical protein Meso_3208 [Mesorhizobium sp. BNC1]
gi|110286521|gb|ABG64580.1| Protein of unknown function UPF0001 [Chelativorans sp. BNC1]
Length = 225
Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats.
Identities = 111/220 (50%), Positives = 143/220 (65%), Gaps = 1/220 (0%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L + ++ + A R V+LVAVSK + +I + GQ +F EN++QEA+
Sbjct: 5 AQNLSKVRDRMVQAVREAGRASKDVALVAVSKTFAADEILPVIEAGQRVFGENRVQEAQG 64
Query: 64 KWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KW L++ D++L IG LQSNK E V+LFDVIETV REK A+ L+ EM KQ R L +
Sbjct: 65 KWPGLKEAFPDIELHLIGPLQSNKAKEAVALFDVIETVDREKIAAALAAEMEKQGRRLRL 124
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
Y+QVNTG E QK+GI P +T FV CR+ + L +EGLMCIPP NP PHF LL ++AR
Sbjct: 125 YVQVNTGLEPQKAGIDPRETAAFVARCREVHGLEIEGLMCIPPLDENPGPHFALLEKLAR 184
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
E + KLSMGM+ DFE AIA GATS+R+GS IFG R
Sbjct: 185 EAGVEKLSMGMSGDFETAIAFGATSIRVGSAIFGSRAYSA 224
>gi|261250164|ref|ZP_05942740.1| hypothetical protein VIA_000184 [Vibrio orientalis CIP 102891]
gi|260939280|gb|EEX95266.1| hypothetical protein VIA_000184 [Vibrio orientalis CIP 102891]
Length = 238
Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats.
Identities = 73/234 (31%), Positives = 113/234 (48%), Gaps = 13/234 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE + R +++V L+AVSK ++ I A GQ+ F EN +QE
Sbjct: 3 SIQQNIEQITSQIEAAQQKCGRSRETVQLLAVSKTKPNEAILEAARAGQLAFGENYVQEG 62
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + E ++ FIG +QSNK + F + T+ R K A L+ + S
Sbjct: 63 ADKVAHFSEHHPELALEWHFIGPIQSNKSRHVAENFAWVHTIDRAKIAQRLNDQRPAGSA 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
+ V +QVNT E KSG+ ++ + L L + GLM IP + + F
Sbjct: 123 PIQVLMQVNTSGEQSKSGLNDDEIFELAELISSLPNLTLRGLMSIPANVTDYASQLGAFT 182
Query: 176 LLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L+E+ + K+ LSMGM+ D E A+ +G+T VRIG+ IFG R
Sbjct: 183 QLAELKDKLAQRYPEQKIDTLSMGMSGDMEAAVEAGSTMVRIGTAIFGARDYSN 236
>gi|291615213|ref|YP_003525370.1| alanine racemase domain protein [Sideroxydans lithotrophicus ES-1]
gi|291585325|gb|ADE12983.1| alanine racemase domain protein [Sideroxydans lithotrophicus ES-1]
Length = 226
Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats.
Identities = 81/227 (35%), Positives = 111/227 (48%), Gaps = 10/227 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + LQ + I +AI A R V L+AVSK ++ +R A GQ F EN LQ
Sbjct: 1 MTAILSNLQATRDAIAQAAISAHRNVAEVHLLAVSKTFPAEAVREAYRGGQAAFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA +K LR ++ FIG +QSNK I F + +V R K A LS + Q
Sbjct: 61 EALEKIAALRDLP-LEWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAERLSAQRPSQLPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L + +QVN E KSG+ P + L + GLM IP + + F
Sbjct: 120 LNICLQVNVSGEESKSGVAPAEVAQLAQDVAHLPNLRLRGLMTIPSPAADQEQQRAPFAQ 179
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + ++ L LSMGMT DF AI GAT VR+G+ IFG+R
Sbjct: 180 MRALLKQLNSQGMSLDTLSMGMTHDFPAAIMEGATIVRVGTAIFGQR 226
>gi|116751046|ref|YP_847733.1| alanine racemase domain-containing protein [Syntrophobacter
fumaroxidans MPOB]
gi|116700110|gb|ABK19298.1| alanine racemase domain protein [Syntrophobacter fumaroxidans MPOB]
Length = 234
Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats.
Identities = 83/230 (36%), Positives = 123/230 (53%), Gaps = 12/230 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L+ ++++ + A R +V LVAV+K V + +IR + G + EN +QEA
Sbjct: 3 TVAENLERIQERMNAACSRAGRDPAAVRLVAVTKTVPTDRIREGVEAGLTLLGENYIQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K L ++ V FIG LQSNK D + TV R + A L + K++R +P
Sbjct: 63 RRKIEAL-EDLAVSWHFIGHLQSNKARVAAEYCDWVHTVDRLRLAVELDRQARKRNRVIP 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V +QVN G E +SG+ P+ L+V GLM +PP N +P F LL
Sbjct: 122 VLLQVNVGDEQSRSGVSPDDLPKLFEAVAALSGLSVRGLMTLPPYFENAQEVRPFFRLLR 181
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ R +LT+LSMGM+ DFE+A+ GAT VRIG+ +FG RP
Sbjct: 182 ELLERLRGIAPRPGELTELSMGMSNDFEVAVEEGATLVRIGTALFGGRPA 231
>gi|150398389|ref|YP_001328856.1| alanine racemase domain-containing protein [Sinorhizobium medicae
WSM419]
gi|150029904|gb|ABR62021.1| alanine racemase domain protein [Sinorhizobium medicae WSM419]
Length = 219
Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats.
Identities = 113/219 (51%), Positives = 150/219 (68%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +L +I S A R +++VSLVAVSK D+ I + GQ +F EN++QE
Sbjct: 1 MEVEERLNDVLSRIRKSEKSANRSENAVSLVAVSKTFDADSIGPVIDAGQRVFGENRVQE 60
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW L+ + D++L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q R
Sbjct: 61 AQSKWPALKGRTPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALAAEMKRQERE 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ +Y+QVNTG E QK+GI P T FV CR++ L++EGLMCIPP NP PHF LL++
Sbjct: 121 IRLYVQVNTGLEPQKAGIAPEGTGAFVTFCREELGLDIEGLMCIPPLDENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C L++LSMGM+ DFE AIA GATSVR+GS IFG R
Sbjct: 181 LASQCGLSRLSMGMSGDFETAIAFGATSVRVGSAIFGAR 219
>gi|296134835|ref|YP_003642077.1| alanine racemase domain protein [Thiomonas intermedia K12]
gi|295794957|gb|ADG29747.1| alanine racemase domain protein [Thiomonas intermedia K12]
Length = 243
Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats.
Identities = 85/228 (37%), Positives = 112/228 (49%), Gaps = 10/228 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L +Q+I +A A R SV+L+AVSK ++ + + GQ F EN +QEA
Sbjct: 11 LAHPLSAVRQRIAQAAAAAGRDPRSVTLLAVSKTFPAQDVAQLAALGQTAFGENYVQEAV 70
Query: 63 KKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K LR +W +Q FIG LQSNK ++ FD + ++ R K A LS + + L
Sbjct: 71 DKIAALRPDWPALQWHFIGPLQSNKTRDVAEHFDWVHSIDRLKLAQRLSDQRPAELEPLQ 130
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
V IQVN E KSG+ P +L + GLMCIP + F L
Sbjct: 131 VCIQVNVDGETTKSGVRPEDASALAAAVAALPRLRLRGLMCIPEPRADAAAQRAPFARLR 190
Query: 179 EIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ L LSMGM+ D E AI GAT VR+GS IFG RP
Sbjct: 191 ELRDAIAAEHGLTLDTLSMGMSADLEAAILEGATIVRVGSAIFGARPA 238
>gi|325265726|ref|ZP_08132415.1| YggS family pyridoxal phosphate enzyme [Kingella denitrificans ATCC
33394]
gi|324982857|gb|EGC18480.1| YggS family pyridoxal phosphate enzyme [Kingella denitrificans ATCC
33394]
Length = 235
Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats.
Identities = 71/226 (31%), Positives = 103/226 (45%), Gaps = 8/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL +Q+I +A+ A+R S+ L+AVSK + IR GQ F EN +QE
Sbjct: 6 MSLLPAYTEVRQRIVQAALNARRDPGSLQLIAVSKTFPADDIRELYGLGQRDFGENYIQE 65
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L D+ IG +QSNK + + T+ K A L+ + + L
Sbjct: 66 WWQKTEQLADCPDICWHIIGQVQSNKSRYVAERAHWLHTLDNVKLARRLNNQRPEHLPPL 125
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V I++N + K GI D +L + GLMC+ A + + F +
Sbjct: 126 QVCIEINIAQDANKHGIAAEALDDLAREVAGLPRLKLRGLMCVAQADADETVLRQQFTAM 185
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 186 RQHLARLQTIAPHADTLSMGMSGDLECAIACGATMVRIGTALFGRR 231
>gi|323493580|ref|ZP_08098701.1| hypothetical protein VIBR0546_04999 [Vibrio brasiliensis LMG 20546]
gi|323312103|gb|EGA65246.1| hypothetical protein VIBR0546_04999 [Vibrio brasiliensis LMG 20546]
Length = 238
Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats.
Identities = 75/234 (32%), Positives = 110/234 (47%), Gaps = 13/234 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE + R + SV L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEQITSQIEVAQQKCGRGRGSVQLLAVSKTKPIEAILEAAQAGQTAFGENYVQEG 62
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K I + E +++ FIG +QSNK + F + TV R K A L+ + +
Sbjct: 63 ANKVIHFAQHHPELNLEWHFIGPIQSNKSRHVAENFAWVHTVDRAKIAQRLNDQRPQGLE 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+ V IQVNT E KSGI + L L + GLM IP + + + +
Sbjct: 123 PIQVLIQVNTSGESSKSGIDNEEIFAIAELISSLPNLTLRGLMSIPANVSDYQSQLAAFT 182
Query: 179 EIAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++A+ E + LSMGM+ D + AI +G+T VRIG+ IFG R
Sbjct: 183 QLAQLKDKLAQQFPEQNIDTLSMGMSGDMDAAIEAGSTMVRIGTAIFGARDYSN 236
>gi|254560698|ref|YP_003067793.1| alanine racemase [Methylobacterium extorquens DM4]
gi|254267976|emb|CAX23844.1| putative enzyme with PLP-binding domain, putative alanine racemase
[Methylobacterium extorquens DM4]
Length = 246
Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats.
Identities = 101/218 (46%), Positives = 130/218 (59%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + I +A +R SV LVAVSK V ++ I AL GQ IF EN +QE+
Sbjct: 25 DVAAGLAEVRASIRRAAEDNERDPASVHLVAVSKTVPAEGILPALEAGQRIFGENYVQES 84
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K KW LR+ DV+L +G LQSNK E V LFDVI ++ R A+ L+ E+ + R
Sbjct: 85 KAKWPGLRERFPDVELHLVGPLQSNKAREAVELFDVIHSLDRLSLAAALAKEIERSGRAP 144
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ IQVNTG E QK+G+ P+Q + CR+ + L + GLMCIPPA P PHF LL+ I
Sbjct: 145 KLLIQVNTGDETQKAGVSPDQVDVLLSECRETHNLAIHGLMCIPPAEDPPSPHFALLARI 204
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A L LSMGM+ DF AI GAT VR+G+ IFG R
Sbjct: 205 AERHGLPILSMGMSADFPAAIQMGATHVRVGTAIFGRR 242
>gi|221133769|ref|ZP_03560074.1| hypothetical protein GHTCC_02484 [Glaciecola sp. HTCC2999]
Length = 235
Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats.
Identities = 75/225 (33%), Positives = 108/225 (48%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++ +I A A R SV L+AVSK + A GQ F EN +QE
Sbjct: 4 TIAQNIENILSQITVLAQDADREPASVQLLAVSKTKPISDVIQAYDAGQRHFGENYVQEG 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L D+ FIG +QSNK I FD ++ R K A L+ + + L
Sbjct: 64 VEKVHALAHLSDLVWHFIGPIQSNKSKFIAECFDWCHSIDRLKIAQRLNNQRAVDQKPLQ 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYLLS 178
V IQVN E+ K+GI P + Q QL + G+M IP A + F L+
Sbjct: 124 VCIQVNIDNEVTKAGITPEELPAIASQIAQMPQLTLRGIMAIPKATSIITEQRDSFERLA 183
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + + LSMGM+ D AI +G+T VR+G+GIFG+R
Sbjct: 184 HLYQALQTNFPDVDILSMGMSGDIGPAIEAGSTMVRVGTGIFGQR 228
>gi|261210038|ref|ZP_05924336.1| hypothetical protein VCJ_000280 [Vibrio sp. RC341]
gi|260840803|gb|EEX67345.1| hypothetical protein VCJ_000280 [Vibrio sp. RC341]
Length = 236
Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats.
Identities = 79/231 (34%), Positives = 116/231 (50%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + +V L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSTVQLLAVSKTKPVEAILEATQAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K +++ ++ FIG LQSNK + FD + T+ REK A L+ + +
Sbjct: 63 VDKIRYFAEQYPQLALEWHFIGPLQSNKTRLMAEHFDWVHTIEREKIAVRLNEQRPADMQ 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVNT E KSGI P Q L + L + GLM IP + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISRLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|37525148|ref|NP_928492.1| hypothetical protein plu1180 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36784574|emb|CAE13474.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 231
Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats.
Identities = 68/229 (29%), Positives = 104/229 (45%), Gaps = 8/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + I +A +R + ++L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 NIEQNLQDVRTHIAIAAQKCERAPEEITLLAVSKTKPVEDIEKAIAAGQRQFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K D+ FIG LQSNK + F+ T+ R K A L+ + + L
Sbjct: 63 VEKIAYFANCNDLIWHFIGPLQSNKSRLVAENFNWCHTIDRLKIAQRLNEQRPEGMEPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ IQ+N E KSGI ++ + + + GLM IP + + +
Sbjct: 123 ILIQINISDERSKSGIQLDELSTLAAEMNKLPNVRLRGLMAIPAPEPDYAHQLAVFRRME 182
Query: 182 R--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ ++ LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 183 QAFLNLKTKYPQIDTLSMGMTDDMAAAINCGSTLVRIGTAIFGARQYHN 231
>gi|118591433|ref|ZP_01548831.1| hypothetical protein SIAM614_27338 [Stappia aggregata IAM 12614]
gi|118436105|gb|EAV42748.1| hypothetical protein SIAM614_27338 [Stappia aggregata IAM 12614]
Length = 223
Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats.
Identities = 103/220 (46%), Positives = 135/220 (61%), Gaps = 1/220 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S ++L + I N+ R + SV+L+AVSK ++ +IR L GQ +F EN++QEA
Sbjct: 3 SAADRLANVQADIRNAEAEFGRAQGSVTLIAVSKTFEADEIRPVLEAGQRVFGENRVQEA 62
Query: 62 KKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KW LR++++ ++L IG LQSNK E ++ FDV+ TV R K A L EM KQ R L
Sbjct: 63 MHKWPGLREDFEGIELHLIGPLQSNKAKEAIATFDVVHTVDRPKIARALKAEMEKQGRDL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
P +IQVNTG E QK+GI P FV CR+ LN+ GLMCIPP HF LL +I
Sbjct: 123 PCFIQVNTGEEPQKAGIAPKDVDAFVKECREDVGLNIVGLMCIPPVNEASGEHFALLEKI 182
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
A L KLSMGM+ D+ +A+ GAT VR+GS IFG R
Sbjct: 183 AARNGLEKLSMGMSSDYPVAVGFGATHVRVGSAIFGSRDY 222
>gi|160938829|ref|ZP_02086180.1| hypothetical protein CLOBOL_03723 [Clostridium bolteae ATCC
BAA-613]
gi|158437792|gb|EDP15552.1| hypothetical protein CLOBOL_03723 [Clostridium bolteae ATCC
BAA-613]
Length = 226
Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats.
Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L+ ++ IE++ A R + V+L+AVSK + A G F ENK+QE
Sbjct: 2 IKKQLEEVRKHIEDACRRAGRNPEEVTLIAVSKTKPVPMLMEAYDAGARDFGENKVQEIL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + D++ IG LQ NKV +++ +I +V + A + + K + +
Sbjct: 62 NKKPELPE--DIRWHMIGHLQRNKVHQVIDKAVLIHSVDSLRLAQQIEDDAAKLGLDVDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSE 179
++VN E K G + + +D ++ + ++++GLM I P + NP+ + F L E
Sbjct: 120 LLEVNVAREESKYGFLMEEVEDAIMQIKDFPHVHIKGLMTIAPFVDNPEENRGIFKKLFE 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A ++ LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 180 FAVDIGGKNIDNVTMSVLSMGMTGDYEVAIEEGATMVRVGTGIFGSR 226
>gi|293391891|ref|ZP_06636225.1| succinyl-diaminopimelate desuccinylase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290952425|gb|EFE02544.1| succinyl-diaminopimelate desuccinylase [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 231
Score = 282 bits (722), Expect = 3e-74, Method: Composition-based stats.
Identities = 74/228 (32%), Positives = 111/228 (48%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ+ +QKI + +V+L+AVSK + I A GQ F EN +QE
Sbjct: 3 NIRRNLQLVQQKITQICQMVGSSPSAVTLLAVSKTKPVEDILTAYEAGQEAFGENYVQEG 62
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ +++ FIG LQSNK + FD ++ + R K A L+ + L
Sbjct: 63 VEKIQFCQQHNINLEWHFIGPLQSNKTRLVAEYFDWMQALDRAKIADRLNEQRSPHKAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
V IQVN E KSGI P + D L + GLM IP + + FY +
Sbjct: 123 NVLIQVNISNEASKSGIQPCEILDLAKHLENLPHLCLRGLMAIPEPTNDVTRQEQVFYQM 182
Query: 178 SEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + ++ LSMGMT D ++AI G+T VR+G+ IFG+R
Sbjct: 183 RVLFEQLQQALPNAQIDTLSMGMTDDMQMAIKCGSTMVRVGTAIFGKR 230
>gi|303250530|ref|ZP_07336727.1| hypothetical protein APP6_0100 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|303251874|ref|ZP_07338045.1| hypothetical protein APP2_0195 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307247027|ref|ZP_07529081.1| hypothetical protein appser2_260 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307251572|ref|ZP_07533479.1| hypothetical protein appser6_960 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302649304|gb|EFL79489.1| hypothetical protein APP2_0195 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302650518|gb|EFL80677.1| hypothetical protein APP6_0100 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306856479|gb|EFM88628.1| hypothetical protein appser2_260 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306861036|gb|EFM93042.1| hypothetical protein appser6_960 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 227
Score = 281 bits (721), Expect = 3e-74, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 111/229 (48%), Gaps = 10/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L KQ+I+ + R +V L+AVSK + I A++ GQ F EN +QE
Sbjct: 1 MSISQNLSEIKQQIQQISQQCGRD--NVRLLAVSKTKPVEAIEEAIAAGQTAFGENYVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ +++ FIG+LQSNK + FD I+TV R K A LS + L
Sbjct: 59 GVEKIAYFAQQPNLEWHFIGALQSNKTRLVAENFDWIQTVDRLKIAERLSAQRSANKAPL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQ+N E KSGI P + + Q L + GLM IP P+ +
Sbjct: 119 NVLIQINISDEASKSGIQPEELDELAKAISQLPNLRLRGLMAIPKPESEPEQQKIALRKM 178
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + + LSMGM+ D AI G+T VRIG+ IFG R
Sbjct: 179 RQLFDRLQDEFEGIDTLSMGMSDDMAAAIECGSTMVRIGTAIFGTRYYS 227
>gi|160892651|ref|ZP_02073441.1| hypothetical protein CLOL250_00181 [Clostridium sp. L2-50]
gi|156865692|gb|EDO59123.1| hypothetical protein CLOL250_00181 [Clostridium sp. L2-50]
Length = 231
Score = 281 bits (721), Expect = 3e-74, Method: Composition-based stats.
Identities = 76/230 (33%), Positives = 112/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKLQEA 61
L ++ QKI + A R + V+L+AVSK I L + F ENK+QE
Sbjct: 2 LKENYELVDQKITEACKRAGRDRKDVTLIAVSKTKPLSDIEELLAETDAIDFGENKVQEL 61
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ + ++ V IG LQ+NKV IV +I +V A + E K +
Sbjct: 62 VDKYETVSRK--VNWHMIGHLQTNKVKYIVDKVCLIHSVDSVNLAKTIEKEAAKHDVIVK 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLS 178
V I+VN E K G+ +T+D ++ + + +EGLM I P + +P+ HF L
Sbjct: 120 VLIEVNVAGEESKFGVSVEETEDLIMQIKDFPHIQIEGLMTIAPFVDDPEDNRVHFRRLR 179
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ + LSMGMT D+E+A+ GAT VR+G+GIFG R
Sbjct: 180 ELLLDINSKNIDNVHMNVLSMGMTNDYEVAVEEGATMVRVGTGIFGARNY 229
>gi|240948416|ref|ZP_04752794.1| hypothetical protein AM305_01454 [Actinobacillus minor NM305]
gi|240297242|gb|EER47800.1| hypothetical protein AM305_01454 [Actinobacillus minor NM305]
Length = 230
Score = 281 bits (721), Expect = 4e-74, Method: Composition-based stats.
Identities = 76/228 (33%), Positives = 114/228 (50%), Gaps = 10/228 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L +Q+I+ A +R + L+AVSK + I A+ GQ F EN +QE
Sbjct: 1 MSISQNLSQIQQRIQQIAHQCQRS--DIRLLAVSKTKPVQAIEEAIQAGQKAFGENYVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ +++ FIG LQSNK + FD I+TV R K A L+ + + L
Sbjct: 59 GVEKINYFKENKEIEWHFIGPLQSNKTRLVAEHFDWIQTVDRLKIAERLNEQRPEGKAPL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQ+N E KSGI P + + L ++GLM IP +P+ F +
Sbjct: 119 NVLIQINISDESSKSGIAPEEMLELAHKIASLPNLRLKGLMAIPKPESDPEQQKIAFRKM 178
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + + LSMGM+ D + AI G+T VRIG+ IFG+R
Sbjct: 179 EQLFHRLQQAFSGIDTLSMGMSDDMQSAIECGSTMVRIGTAIFGKRDY 226
>gi|83594963|ref|YP_428715.1| hypothetical protein Rru_A3634 [Rhodospirillum rubrum ATCC 11170]
gi|83577877|gb|ABC24428.1| Protein of unknown function UPF0001 [Rhodospirillum rubrum ATCC
11170]
Length = 242
Score = 281 bits (721), Expect = 4e-74, Method: Composition-based stats.
Identities = 101/219 (46%), Positives = 136/219 (62%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ + L+ + I ++ R V+LVAVSK +++R AL G +F EN++QE
Sbjct: 14 LDVVENLRAVRGAIADACKPVGRDAAGVALVAVSKNNGPERVRAALRAGHRLFGENRVQE 73
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW + + D+ L IG LQ+NKV E V+LFD I++V R + A L+ EM Q R
Sbjct: 74 AQGKWPAFKADHADIDLHLIGPLQTNKVREAVALFDAIDSVDRPRLARALAEEMDHQGRR 133
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
LPV IQVNTG E QK+GI+P F+ CR+ L+V GLMCIPP P PHF LL E
Sbjct: 134 LPVLIQVNTGEEPQKAGILPRDADGFLRECREDLGLDVRGLMCIPPVDDEPSPHFALLRE 193
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IAR L LSMGM+ D+ +A+A GAT VR+G+ IFG+R
Sbjct: 194 IARRHGLGVLSMGMSADYGVAVAFGATHVRLGTAIFGDR 232
>gi|294338787|emb|CAZ87121.1| putative Alanine racemase, yggS [Thiomonas sp. 3As]
Length = 243
Score = 281 bits (720), Expect = 4e-74, Method: Composition-based stats.
Identities = 85/228 (37%), Positives = 112/228 (49%), Gaps = 10/228 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L +Q+I +A A R SV+L+AVSK ++ I A + GQ F EN +QEA
Sbjct: 11 LAHPLSAVRQRIAQAAAAAGRDPHSVTLLAVSKTFPAEDIARAAALGQTAFGENYVQEAV 70
Query: 63 KKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K LR +W +Q FIG LQSNK ++ FD + ++ R K A LS + + L
Sbjct: 71 DKIAALRPDWPALQWHFIGPLQSNKTRDVAEHFDWVHSIDRLKLAQRLSDQRPAELDPLQ 130
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLS 178
V IQVN E KSG+ P L + GLMCIP + + F L
Sbjct: 131 VCIQVNVDSETTKSGVRPEDASALAAAVAALPNLRLRGLMCIPAPREGLDAQRAPFARLR 190
Query: 179 EIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ L LSMGM+ D E A+ GAT VR+GS IFG RP
Sbjct: 191 ALRDAIAAEHGLTLDTLSMGMSADLEAAVLEGATIVRVGSAIFGARPA 238
>gi|154244235|ref|YP_001415193.1| alanine racemase domain-containing protein [Xanthobacter
autotrophicus Py2]
gi|154158320|gb|ABS65536.1| alanine racemase domain protein [Xanthobacter autotrophicus Py2]
Length = 232
Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats.
Identities = 101/216 (46%), Positives = 138/216 (63%), Gaps = 1/216 (0%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ L + ++ +S A R +V+LVAVSK + +I L+ GQ +F EN++QEA+
Sbjct: 11 ASGLHAVRAEVLSSCRDAGRDPATVTLVAVSKTFPAPEIVPVLAAGQRVFGENRVQEAQG 70
Query: 64 KWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KW LR ++ V+L IG LQSNK E V LFDVI TV R K A+ L+ EM +Q R +
Sbjct: 71 KWPALRADYQGVELHLIGPLQSNKAREAVELFDVIHTVDRPKIAAALAGEMARQGRNPRL 130
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++QVNTG E QK+G++P F+ CR+++ L + GLMCIPPA P PHF LL++IA
Sbjct: 131 FVQVNTGAEPQKAGVLPETADAFIAECRERHGLKIFGLMCIPPATDVPDPHFALLAKIAA 190
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGM+ DF AI GAT VR+GS IFG R
Sbjct: 191 RNGISGLSMGMSADFPAAIRQGATHVRVGSAIFGHR 226
>gi|90412040|ref|ZP_01220047.1| Predicted enzyme with a TIM-barrel fold [Photobacterium profundum
3TCK]
gi|90327018|gb|EAS43397.1| Predicted enzyme with a TIM-barrel fold [Photobacterium profundum
3TCK]
Length = 233
Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats.
Identities = 75/230 (32%), Positives = 110/230 (47%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +I ++ R DSV L+AVSK +I A++ GQ F EN +QE
Sbjct: 3 SIKQNIEQVISQITSATEKCGRTTDSVQLLAVSKTKPIAEIDDAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K ++ FIG +QSNK I FD + +V R KTA L+ +
Sbjct: 63 VEKVQHFANHAQTEEIFWHFIGPIQSNKTRPIAEHFDWVHSVDRIKTARRLNEQRPSSMA 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFY 175
L + +QVNT E KSG+ N L + GLM IP + F
Sbjct: 123 PLNILLQVNTSGEESKSGVNINDLAALADEIATMPNLVLRGLMSIPQKADSYDSQYAAFK 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LL++ ++ ++ LSMGM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 183 LLADAQQQLHIKYPQIDTLSMGMSGDMDAAIAAGSTIVRIGTAIFGARDY 232
>gi|258514369|ref|YP_003190591.1| alanine racemase domain-containing protein [Desulfotomaculum
acetoxidans DSM 771]
gi|257778074|gb|ACV61968.1| alanine racemase domain protein [Desulfotomaculum acetoxidans DSM
771]
Length = 225
Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats.
Identities = 69/226 (30%), Positives = 117/226 (51%), Gaps = 12/226 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + + + K++I +A + R D ++L+AV+K V I+ CG F EN++QE
Sbjct: 1 MNIRDNILLVKERIAAAACRSGRDPDDITLLAVTKNVSVDLIKQVYDCGFKEFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KK L D IG LQ+NK+ I+ +I ++ A ++ + + Q+ +
Sbjct: 61 LQKKIALLPD--DAVWHMIGHLQTNKIKYIIDKIGLIHSLDSLSLAREINRQALLQNMKV 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
V +++N E K GI ++ ++FV L L V GLM + P +P F L
Sbjct: 119 QVLLEINISGEQSKFGIPLSEAREFVKLVNCLPGLTVRGLMTMAPYTTYPEEVRPIFRGL 178
Query: 178 SEIAR-------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+++ E + LSMGM+ DFE+A+ GAT VR+G+ +FG
Sbjct: 179 KDLSERISRESSEINMDVLSMGMSNDFEVAVEEGATIVRVGTALFG 224
>gi|291460492|ref|ZP_06599882.1| pyridoxal phosphate enzyme, YggS family [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291416864|gb|EFE90583.1| pyridoxal phosphate enzyme, YggS family [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 230
Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats.
Identities = 73/227 (32%), Positives = 113/227 (49%), Gaps = 12/227 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L+ ++I + A R ++SV L+AVSK IR A+ G F EN++QE
Sbjct: 3 NISENLERISERIFAACERAGRKRESVELIAVSKTKPVSDIREAMRLGIRCFGENRVQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K + ++ + IG LQ NKV + + ++I +V A + E K +
Sbjct: 63 RQKTAEIPEK--LHWHMIGVLQKNKVKYLPGMVEMIHSVDSLGLAQEIEKECKKHGISMD 120
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLS 178
V +VN G E K G++P + F+ + L + GLM + P +P F L
Sbjct: 121 VLCEVNVGREESKGGVLPEELPGFLSEAVKLSHLRIRGLMTVAPIASEAEESRPIFRSLR 180
Query: 179 EIARE-------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + +LSMGM+ DFE+AI GAT VRIGS IFG+R
Sbjct: 181 ELLESMNREIPALSMDQLSMGMSGDFEVAIEEGATLVRIGSAIFGDR 227
>gi|218529832|ref|YP_002420648.1| alanine racemase domain protein [Methylobacterium chloromethanicum
CM4]
gi|218522135|gb|ACK82720.1| alanine racemase domain protein [Methylobacterium chloromethanicum
CM4]
Length = 247
Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats.
Identities = 101/218 (46%), Positives = 130/218 (59%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + I +A +R SV LVAVSK V ++ I AL GQ IF EN +QE+
Sbjct: 26 DVAAGLAEVRASIRRAAEDNERDPASVHLVAVSKTVPAEGILPALESGQRIFGENYVQES 85
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K KW LR+ DV+L +G LQSNK E V LFDVI ++ R A+ L+ E+ + R
Sbjct: 86 KAKWPALRERFPDVELHLVGPLQSNKAREAVELFDVIHSLDRLSLAAALAKEIERSGRAP 145
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ IQVNTG E QK+G+ P+Q + CR+ + L + GLMCIPPA P PHF LL+ I
Sbjct: 146 KLLIQVNTGDETQKAGVSPDQVDVLLSECRETHNLAIHGLMCIPPAEDPPSPHFALLARI 205
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A L LSMGM+ DF AI GAT VR+G+ IFG R
Sbjct: 206 AERHGLPILSMGMSADFPAAIQMGATHVRVGTAIFGRR 243
>gi|115522420|ref|YP_779331.1| hypothetical protein RPE_0392 [Rhodopseudomonas palustris BisA53]
gi|115516367|gb|ABJ04351.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
BisA53]
Length = 221
Score = 281 bits (719), Expect = 5e-74, Method: Composition-based stats.
Identities = 95/218 (43%), Positives = 133/218 (61%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L ++ I + A+R + VSL+AVSK ++ I L GQ F EN++QEA
Sbjct: 4 AVATGLSAVERAIARACADARRDRGEVSLIAVSKTFPAEAIVPVLQAGQRAFGENRVQEA 63
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K KW LR+ D L IG LQSNK + +LFD I +V R+ A L+ E+ +R +
Sbjct: 64 KAKWPALRQSYPDTVLHLIGPLQSNKAKDAAALFDAIHSVDRDSLAQALAKELPLHNRLI 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+++Q+NTG E QK+G+ P + DF+ CR+ + L + GLMCIPP P PHF L ++I
Sbjct: 124 ELFVQLNTGEEPQKAGVAPAEADDFLKRCREHHGLEIAGLMCIPPVDEAPAPHFALTAKI 183
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A+ LTKLSMGM+ DF AI GAT +R+GS IFG R
Sbjct: 184 AKRNGLTKLSMGMSADFATAIQFGATHIRVGSAIFGHR 221
>gi|188996752|ref|YP_001931003.1| alanine racemase domain protein [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931819|gb|ACD66449.1| alanine racemase domain protein [Sulfurihydrogenibium sp. YO3AOP1]
Length = 230
Score = 281 bits (719), Expect = 5e-74, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 117/229 (51%), Gaps = 10/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + +++I+ + R ++ V L+A SK +KI A G F ENK+QE
Sbjct: 1 MSIKENVLKIEERIQKACDKVGRKREEVILLAASKTQPVEKIIEAYESGIRYFGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L++ D+ IG LQ+NKV V +++I +V R+ + K ++ +
Sbjct: 61 GIEKIEKLKEYADIHWHLIGGLQTNKVKYAVKYYELIHSVDRQALVDEIEKRGEKLNKVI 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
I+VN G E K G+ + K+ K + + GLM IPP NP +P+F L
Sbjct: 121 DGLIEVNFG-EESKFGVKKDNLKELFEYILTKKYIKIHGLMAIPPYFENPEDVRPYFIKL 179
Query: 178 SEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ KL+ LSMGM+ DFE+AI GAT VRIG+ IFGER
Sbjct: 180 RTLRDNLEKEYNVKLSHLSMGMSHDFEVAIEEGATIVRIGTAIFGERNY 228
>gi|260913719|ref|ZP_05920195.1| YggS family pyridoxal phosphate enzyme [Pasteurella dagmatis ATCC
43325]
gi|260632258|gb|EEX50433.1| YggS family pyridoxal phosphate enzyme [Pasteurella dagmatis ATCC
43325]
Length = 233
Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 110/231 (47%), Gaps = 11/231 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + +Q+I+ A+R + +V L+AVSK + I A GQ F EN +QE
Sbjct: 1 MTIKQNVTQIQQRIQYYTAQAQRQQSAVKLLAVSKTKTVEDIYQAYQAGQTTFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K +++ +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GIDKIAYFQQQNIELEWHFIGPLQSNKTRLVAEHFDWMQTLDRIKIADRLNEQRPYYKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH------ 173
L V IQ+N E KSGI PN + L + GLM IP + +
Sbjct: 121 LNVLIQINISDENSKSGITPNDMLALATHIQNLPHLRLRGLMAIPAPTDDLQQQEQAFNA 180
Query: 174 ----FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L + E ++ LSMGMT D AI G+T VRIG+ IFG R
Sbjct: 181 MNSLFIALQQALPEAQIDTLSMGMTDDMASAIKCGSTMVRIGTAIFGAREY 231
>gi|23502661|ref|NP_698788.1| hypothetical protein BR1808 [Brucella suis 1330]
gi|161619728|ref|YP_001593615.1| hypothetical protein BCAN_A1846 [Brucella canis ATCC 23365]
gi|163845385|ref|YP_001623040.1| hypothetical protein BSUIS_B1285 [Brucella suis ATCC 23445]
gi|254703574|ref|ZP_05165402.1| hypothetical protein Bsuib36_06554 [Brucella suis bv. 3 str. 686]
gi|260568879|ref|ZP_05839347.1| alanine racemase domain-containing protein [Brucella suis bv. 4
str. 40]
gi|261754207|ref|ZP_05997916.1| alanine racemase domain-containing protein [Brucella suis bv. 3
str. 686]
gi|23348670|gb|AAN30703.1| conserved hypothetical protein TIGR00044 [Brucella suis 1330]
gi|161336539|gb|ABX62844.1| conserved hypothetical protein [Brucella canis ATCC 23365]
gi|163676108|gb|ABY40218.1| conserved hypothetical protein [Brucella suis ATCC 23445]
gi|260154263|gb|EEW89345.1| alanine racemase domain-containing protein [Brucella suis bv. 4
str. 40]
gi|261743960|gb|EEY31886.1| alanine racemase domain-containing protein [Brucella suis bv. 3
str. 686]
Length = 226
Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats.
Identities = 116/224 (51%), Positives = 151/224 (67%), Gaps = 2/224 (0%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++Q
Sbjct: 1 MSDVVANLNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW LR+ W ++L IG LQSNKV++ V+LFDVIETV REK A+ L+ E+ KQ +
Sbjct: 61 EAQGKWPALREAWASIELHLIGPLQSNKVADAVALFDVIETVDREKIAAALASEIRKQGK 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL
Sbjct: 121 SPKLYVQVNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLE 180
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ARE + KLSMGM+ D+E AI GATSVR+G+ IFG R
Sbjct: 181 KLAREAHVEKLSMGMSGDYETAIGFGATSVRVGAAIFGGRAYSA 224
>gi|188580915|ref|YP_001924360.1| alanine racemase domain protein [Methylobacterium populi BJ001]
gi|179344413|gb|ACB79825.1| alanine racemase domain protein [Methylobacterium populi BJ001]
Length = 244
Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats.
Identities = 98/218 (44%), Positives = 131/218 (60%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + +I +A +R V LVAVSK V ++ I AL+ GQ +F EN +QE+
Sbjct: 23 DVAAGLAEVRAQIRRAAEDNERDPGGVHLVAVSKTVPAEGILPALTAGQRLFGENYVQES 82
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K KW L+ DV+L +G LQSNK E V LFDVI ++ R A+ L+ E+ + R
Sbjct: 83 KAKWPALKARFPDVELHLVGPLQSNKAREAVELFDVIHSLDRLSLAAALAKEIERSGRAP 142
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ IQVNTG E QK+G+ P+Q + CR+ + L + GLMCIPPA P PHF LL+ I
Sbjct: 143 KLLIQVNTGDEAQKAGVAPDQVDVLLSECRETHGLAIHGLMCIPPAEDPPSPHFALLARI 202
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A L+ LSMGM+ DF AI GAT VR+G+ IFG R
Sbjct: 203 AERHGLSMLSMGMSADFPAAIQMGATHVRVGTAIFGRR 240
>gi|307546704|ref|YP_003899183.1| hypothetical protein HELO_4114 [Halomonas elongata DSM 2581]
gi|307218728|emb|CBV43998.1| K06997 [Halomonas elongata DSM 2581]
Length = 234
Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats.
Identities = 79/227 (34%), Positives = 102/227 (44%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L L ++++ + A RP D L+AVSK + IR A GQ F EN +QEA
Sbjct: 5 ALSESLTAVRERLAAALHAAGRPDDDARLLAVSKTKPAAMIREAWRLGQREFGENYVQEA 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D+ FIG LQSNK + F I +V RE+ A L + L
Sbjct: 65 LDKQAELADLDDIVWHFIGPLQSNKSRIVAEHFAWIHSVDRERLARRLDAQRPASLGPLN 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
V +QVN E KSGI + L + GLM IP +P F L
Sbjct: 125 VCLQVNISDEASKSGISLAELPALAEAVHGLPNLRLRGLMAIPAPCADPDEQRRPFIRLR 184
Query: 179 EIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 185 EALESLRTRLPEAPLDTLSMGMSDDLEAAVMEGATLVRLGTAIFGAR 231
>gi|209965826|ref|YP_002298741.1| hypothetical protein RC1_2548 [Rhodospirillum centenum SW]
gi|209959292|gb|ACI99928.1| conserved hypothetical protein [Rhodospirillum centenum SW]
Length = 241
Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats.
Identities = 104/222 (46%), Positives = 142/222 (63%), Gaps = 1/222 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + I +A R V+LVAVSK+ +K+R AL+ GQ +F EN++QEA
Sbjct: 17 DIAADLAAVRTAIAGAADAVGRDPRGVTLVAVSKVQPVEKLRAALAAGQRVFGENRVQEA 76
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K KW L+ E DV+L IG LQ+NKV E V+LFDVI+TV R K A L+ E +Q+R+
Sbjct: 77 KAKWPALKAEYPDVELHLIGPLQTNKVKEAVALFDVIQTVDRPKLAQALAAECRRQNRWP 136
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
Y++VNTG E QK+GI P + F+ C+ +Y + V GLM IPPA P PHF LL+++
Sbjct: 137 RFYVEVNTGEEPQKAGIAPAEVGAFLAACKAEYGVQVAGLMAIPPAEDEPSPHFALLADL 196
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
AR + LSMGM+ DF++A+ GAT VR+G+ IFGER T
Sbjct: 197 ARRHFVPGLSMGMSHDFDVAVRLGATVVRVGTAIFGERATPT 238
>gi|302386413|ref|YP_003822235.1| alanine racemase domain protein [Clostridium saccharolyticum WM1]
gi|302197041|gb|ADL04612.1| alanine racemase domain protein [Clostridium saccharolyticum WM1]
Length = 231
Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats.
Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ K ++ + A R + V+L+AVSK S I A S G F ENK+QE
Sbjct: 2 VKENLEEVKSRMSAACKRAGRNPEEVTLIAVSKTKPSAMISEAYSAGVRDFGENKVQELC 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + L + D++ IG LQ NKV +++ +I +V + A + E ++S +
Sbjct: 62 EKHLALPE--DIRWHMIGHLQRNKVKQVIDKAVLIHSVDSVRLAVQIEEEAARKSLVADI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
++VN E K G T+ + + ++GLM I P + N +P F L +
Sbjct: 120 LLEVNVAEEDSKYGFKLEGTESAIREIASLPHVRIKGLMTIAPFVENSEENRPVFKKLRQ 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 180 FYVDMQSKNIDNVNMNMLSMGMTGDYEVAIEEGATLVRVGTGIFGTR 226
>gi|304396759|ref|ZP_07378639.1| alanine racemase domain protein [Pantoea sp. aB]
gi|304355555|gb|EFM19922.1| alanine racemase domain protein [Pantoea sp. aB]
Length = 235
Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 111/227 (48%), Gaps = 8/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ LQ +Q+I +A R + ++L+AVSK + + A + GQ+ F EN +QE
Sbjct: 3 SIQQNLQQVRQRIAAAAAQCGRAPEEITLLAVSKTKPASAVEEAFAAGQIGFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L +++ FIG LQSNK + F T+ R++ A LS + L
Sbjct: 63 VEKVQALAAHPELEWHFIGPLQSNKSRLVAENFAWCHTIDRQRIAQRLSDQRPASLPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQVN E KSGIM QL + GLM IP A + + + ++A
Sbjct: 123 VLIQVNISDENSKSGIMLEAVSGLAEQIAALPQLRLRGLMAIPAAESDYQRQLAVCQQMA 182
Query: 182 RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 EAFRQLQQQYSDIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 229
>gi|262403913|ref|ZP_06080470.1| hypothetical protein VOA_001901 [Vibrio sp. RC586]
gi|262349875|gb|EEY99011.1| hypothetical protein VOA_001901 [Vibrio sp. RC586]
Length = 236
Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats.
Identities = 79/231 (34%), Positives = 112/231 (48%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + +V L+AVSK + I A GQ F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSAVQLLAVSKTKPIEAILEATQAGQRCFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + ++ FIG LQSNK + FD + T+ REK A L+ +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIEREKIALRLNEQRPAGMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVNT E KSGI P Q L L + GLM IP + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISGLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ ++ LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQKLAQKYPQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|300693595|ref|YP_003749568.1| enzyme with a tim-barrel fold protein [Ralstonia solanacearum
PSI07]
gi|299075632|emb|CBJ34928.1| Putative predicted enzyme with a tim-barrel fold protein [Ralstonia
solanacearum PSI07]
Length = 226
Score = 281 bits (719), Expect = 6e-74, Method: Composition-based stats.
Identities = 101/218 (46%), Positives = 137/218 (62%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + ++ I+++AI + R D+V+LVA SK V+ + I+ A+ G +F EN++QEA
Sbjct: 4 NLKENIGRIRKAIQHAAIDSGRRTDAVTLVAASKTVEPQHIQKAIDLGLTVFGENRVQEA 63
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KKW LR ++L IG LQSNKV + V LFD IE+V R + A ++ E KQ R
Sbjct: 64 VKKWPELRNRNPGIELHLIGPLQSNKVRQAVGLFDAIESVDRARLAQAIAEEAEKQGRDP 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+YIQVN G E QK G++P + + CR YQLNV+GLMCIPPA +P HF L I
Sbjct: 124 AIYIQVNVGKEPQKGGVLPAEAPALIRACRDVYQLNVQGLMCIPPAGFDPSDHFACLRSI 183
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A + L LSMGM+ D+ AIA GAT VR+G+ IFG R
Sbjct: 184 AEDHGLGILSMGMSADYRQAIAQGATHVRVGTSIFGAR 221
>gi|147678163|ref|YP_001212378.1| hypothetical protein PTH_1828 [Pelotomaculum thermopropionicum SI]
gi|146274260|dbj|BAF60009.1| predicted enzyme [Pelotomaculum thermopropionicum SI]
Length = 226
Score = 281 bits (719), Expect = 7e-74, Method: Composition-based stats.
Identities = 82/227 (36%), Positives = 118/227 (51%), Gaps = 11/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L +++I+ +A A R + + LVAV+K V + IR LS G E+++QE
Sbjct: 1 MSVLENLNRVRRRIDAAAGRAGRNPEEIKLVAVTKTVAVETIREVLSGGVCCLGESRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L V+ FIG LQ+NKV +I+ +I ++ R A LS +
Sbjct: 61 FLQKYGQLPA--GVEWHFIGHLQTNKVKKIIGKVSLIHSLDRWSLAEALSRAACEAGTAA 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V +QVN E K G++P++T FV + L V GLM I P N +P F L
Sbjct: 119 RVLVQVNIAGEKTKYGLLPSETPQFVAEAARLPGLEVMGLMTIAPWCENAEEVRPVFRQL 178
Query: 178 SEIA------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A K+ LSMGM+ DFE+A+ GA VR+GS IFG R
Sbjct: 179 KELAGKLTGLEGVKMDYLSMGMSGDFEVAVEEGANIVRVGSAIFGGR 225
>gi|154483520|ref|ZP_02025968.1| hypothetical protein EUBVEN_01224 [Eubacterium ventriosum ATCC
27560]
gi|149735430|gb|EDM51316.1| hypothetical protein EUBVEN_01224 [Eubacterium ventriosum ATCC
27560]
Length = 230
Score = 280 bits (718), Expect = 8e-74, Method: Composition-based stats.
Identities = 70/229 (30%), Positives = 114/229 (49%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ ++ I+ + R + V+L+AVSK I AL G + + ENK+QE
Sbjct: 2 IVENIKQVEENIKQACEKVGRNPEEVTLIAVSKTKPYTAIEEALPSGILDYGENKVQELC 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L K +++ IG LQ NKV +V +I +V + A + E K V
Sbjct: 62 DKFDILPK--NIRWHMIGHLQRNKVKYLVGKVQLIHSVDSLRLAEQIEKEFAKADEIANV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
I+VN E K GI +T++ + + + ++GLM I P NP+ +F + +
Sbjct: 120 LIEVNMAQEESKFGITSQETEELIREIAKLPHVRIQGLMTIAPFTDNPETNRVYFKNMKK 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + LSMGMT D+++A+ GAT VR+G+GIFGER
Sbjct: 180 LSVDINNKNIDNVSMNVLSMGMTGDYQVAVEEGATMVRVGTGIFGERNY 228
>gi|312171182|emb|CBX79441.1| UPF0001 protein yggS [Erwinia amylovora ATCC BAA-2158]
Length = 237
Score = 280 bits (718), Expect = 8e-74, Method: Composition-based stats.
Identities = 73/227 (32%), Positives = 107/227 (47%), Gaps = 9/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +Q+I +A R ++L+AVSK + + A++ GQ F EN +QE
Sbjct: 3 SIKHNLQQVRQRISTAAAKCGRDPQEITLLAVSKTKPASAVEEAVAAGQCCFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + FIG LQSNK + FD TV R + AS LS + L
Sbjct: 63 VDKI-QLLANPALAWHFIGPLQSNKSRLVAENFDWCHTVDRLRIASRLSQQRPDNLAPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
+ IQ+N E KSGIM + +L + GLM IP + + + ++
Sbjct: 122 ILIQINISAEPSKSGIMLAELPALAQQIAALPRLKLRGLMAIPAPQDSYESQLAVCQQMT 181
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 182 TAFKQLQQDYPGVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGARDY 228
>gi|300313097|ref|YP_003777189.1| enzyme with a TIM-barrel fold protein [Herbaspirillum seropedicae
SmR1]
gi|300075882|gb|ADJ65281.1| enzyme with a TIM-barrel fold protein [Herbaspirillum seropedicae
SmR1]
Length = 233
Score = 280 bits (718), Expect = 8e-74, Method: Composition-based stats.
Identities = 83/228 (36%), Positives = 112/228 (49%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ LQ +Q+I +A A RP +V L+AVSK + + A+ GQ F EN LQEA
Sbjct: 3 SIAQNLQHVQQQIAAAAERAGRPAGAVQLLAVSKTFGPQAVLEAVRAGQRAFGENYLQEA 62
Query: 62 KKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K L + +Q FIG +QSNK I FD + +V R K A LS +
Sbjct: 63 LEKIAALPLLAPDVPLQWHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSEQRPAALG 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFY 175
L V +QVN E KSG+ P + Q L + GLM IP + + F
Sbjct: 123 ALNVCLQVNISGEDSKSGLDPAELPAVAAQVAQLPGLKLRGLMAIPAPSEDVTQQRAAFA 182
Query: 176 LLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + A+ L LSMGM+ D + A+A GA+ VRIGS IFG R
Sbjct: 183 AVRSLLAQLQAQGLALDTLSMGMSADLDAAVAEGASIVRIGSAIFGAR 230
>gi|312115572|ref|YP_004013168.1| alanine racemase domain protein [Rhodomicrobium vannielii ATCC
17100]
gi|311220701|gb|ADP72069.1| alanine racemase domain protein [Rhodomicrobium vannielii ATCC
17100]
Length = 229
Score = 280 bits (718), Expect = 8e-74, Method: Composition-based stats.
Identities = 99/218 (45%), Positives = 141/218 (64%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + ++++ +A A R SV LVAV+K D++ IR L G V+F EN++QEA
Sbjct: 12 AVEDAYLSIRERVWRAAQNAGRDPASVKLVAVTKTFDAEHIRPVLRQGHVLFGENRIQEA 71
Query: 62 KKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW PLR+E+ +L IG +Q+NK E V+ FD IETV R K A+ L+ E+ KQ R
Sbjct: 72 MRKWPPLREEFPRAELHVIGPIQTNKAREAVAFFDCIETVDRPKLAAALAQEIQKQGRAP 131
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+++QVN G E QK+GI P++ FV C ++Y L++ GLMCIPP +P P F ++ +
Sbjct: 132 KLFVQVNIGEEPQKAGIAPDEAAAFVRQCEREYGLSIAGLMCIPPFDDDPVPFFEKMAAL 191
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E L LSMGM+ DFE AIA+GAT VR+GS IFG R
Sbjct: 192 RKELGLLDLSMGMSGDFEAAIAAGATLVRVGSAIFGVR 229
>gi|58040029|ref|YP_191993.1| hypothetical protein GOX1596 [Gluconobacter oxydans 621H]
gi|58002443|gb|AAW61337.1| Hypothetical protein GOX1596 [Gluconobacter oxydans 621H]
Length = 231
Score = 280 bits (718), Expect = 8e-74, Method: Composition-based stats.
Identities = 87/219 (39%), Positives = 125/219 (57%), Gaps = 1/219 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + +I + A R + VSLVAVSK + + AL+ GQ +F EN++QEA
Sbjct: 10 ISGNLAAIRHRIAQACEKAGRAEADVSLVAVSKFHPIESVEAALNAGQHLFGENRVQEAA 69
Query: 63 KKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ LR+ W D++L IG LQ+NK +E + D+IE++ R + + K R
Sbjct: 70 SKFPELRQRWPDLRLHIIGGLQTNKAAEACQIADMIESLDRPSLSDSIEKGAQKAGRLPE 129
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QVNTG E QKSG+ + F+ +++ + GLMCIPP +P PHF LL ++
Sbjct: 130 LLVQVNTGDEPQKSGVPREEADAFIEASLERFGPKIRGLMCIPPEGEDPTPHFRLLRQMG 189
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L LSMGM+ DFE AIA AT VR+G+ IFG RP
Sbjct: 190 HRHGLPVLSMGMSADFEKAIAENATLVRVGTAIFGSRPA 228
>gi|225848394|ref|YP_002728557.1| pyridoxal phosphate enzyme, YggS family [Sulfurihydrogenibium
azorense Az-Fu1]
gi|225644612|gb|ACN99662.1| pyridoxal phosphate enzyme, YggS family [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 227
Score = 280 bits (718), Expect = 8e-74, Method: Composition-based stats.
Identities = 79/227 (34%), Positives = 115/227 (50%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ Q +++I + + R ++ V L+A SK +KI A CG F EN++QE
Sbjct: 1 MSVKENCQKIEERILKACQRSGRKREEVVLLAASKTQPVEKILQAYYCGIRYFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L+ D+ IG LQ+NKV V F++I ++ RE+ + K ++
Sbjct: 61 GIEKIEALKDYKDIHWHLIGGLQTNKVKYAVKYFEMIHSIDREELVDEIEKRASKMNKIQ 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
I+VN G E K G+ K K + + GLM IPP NP +P F L
Sbjct: 121 EGLIEVNFG-EESKYGVKEENLKKLFEYILTKEHIKILGLMAIPPYFENPEDVRPFFRKL 179
Query: 178 SEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + KL LSMGM+ DFE+AI GAT VRIG+ +FGER
Sbjct: 180 RQLKEDLEKDFNVKLPHLSMGMSHDFEVAIEEGATIVRIGTALFGER 226
>gi|322834238|ref|YP_004214265.1| alanine racemase domain protein [Rahnella sp. Y9602]
gi|321169439|gb|ADW75138.1| alanine racemase domain protein [Rahnella sp. Y9602]
Length = 239
Score = 280 bits (718), Expect = 8e-74, Method: Composition-based stats.
Identities = 73/229 (31%), Positives = 104/229 (45%), Gaps = 9/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ ++KI +A R + ++L+AVSK + + A++ GQ+ F EN +QE
Sbjct: 8 AIEQNLQNVREKIAAAAQHCGRSPEEITLLAVSKTKPASAVEEAIAAGQLAFGENYVQEG 67
Query: 62 KKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + + FIG LQSNK + FD T+ R K A L+ + L
Sbjct: 68 VDKIAHFAGHQPALTWHFIGPLQSNKSRLVAENFDWCHTIDRLKIAQRLNEQRPAGLAPL 127
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQVN E KSGI + +L + GLM IP + + ++
Sbjct: 128 QVLIQVNISDEASKSGIAVGDIAELARQIMAMPRLILRGLMAIPAVETDHARQLEVFGKM 187
Query: 181 ARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
K LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 188 RDALKDLQNICPQADTLSMGMTDDMPAAIAAGSTMVRIGTAIFGARDYS 236
>gi|239817773|ref|YP_002946683.1| alanine racemase domain protein [Variovorax paradoxus S110]
gi|239804350|gb|ACS21417.1| alanine racemase domain protein [Variovorax paradoxus S110]
Length = 232
Score = 280 bits (718), Expect = 8e-74, Method: Composition-based stats.
Identities = 76/233 (32%), Positives = 106/233 (45%), Gaps = 18/233 (7%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ +G+ LQ K +I + R V L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MTMIGDDLQQVKNRIAKACAEHGRNPAEVRLLAVSKTFGPEAVREAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E K L +++ IG LQSNK + FD + + R K A LS +
Sbjct: 61 EGLDKIAALSDLRAELEWHCIGPLQSNKTRPVAEHFDWVHGIDRLKIAERLSAQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V +QVN KSG+ P + L + GLM IP P P F
Sbjct: 121 PLQVCLQVNVDGGANKSGVPPEEALPLARAVAALPHLRLRGLMAIP----EPAPDFAAQR 176
Query: 179 EIARECK------------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E+ + L LS+GM+ D E A+++G+T VRIG+ IFG RP
Sbjct: 177 ELCLRARAVYDAIRDAGVELDTLSLGMSADLEAAVSAGSTMVRIGTAIFGGRP 229
>gi|84394065|ref|ZP_00992801.1| Predicted enzyme with a TIM-barrel fold [Vibrio splendidus 12B01]
gi|84375307|gb|EAP92218.1| Predicted enzyme with a TIM-barrel fold [Vibrio splendidus 12B01]
Length = 238
Score = 280 bits (718), Expect = 8e-74, Method: Composition-based stats.
Identities = 75/232 (32%), Positives = 109/232 (46%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +I ++ R +SV L+AVSK I A GQV F EN +QE
Sbjct: 3 SIQQNIEQITSQIRSAEQKCGRAPESVQLLAVSKTKPIDAILEAALGGQVAFGENYVQEG 62
Query: 62 KKKWIPLRKE---WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K ++ +++ FIG +QSNK I F + +V R+K A LS + +
Sbjct: 63 VDKVKHFSEQHSNLNLEWHFIGPIQSNKTRPIAESFQWVHSVERDKIAQRLSDQRPSELP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVNT E KSG L L + GLM IP + + + F
Sbjct: 123 PLQVLIQVNTSGEESKSGTSEETVFALAELISLLPNLTLRGLMSIPANVSDYQSQLNAFS 182
Query: 176 LLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L+E+ A+ + LSMGM+ D + A+ +G+T VRIG+ IFG R
Sbjct: 183 QLAELKDKLAAKYPNIDTLSMGMSGDMDAAVEAGSTMVRIGTAIFGARDYAN 234
>gi|114319503|ref|YP_741186.1| hypothetical protein Mlg_0341 [Alkalilimnicola ehrlichii MLHE-1]
gi|114225897|gb|ABI55696.1| Protein of unknown function UPF0001 [Alkalilimnicola ehrlichii
MLHE-1]
Length = 237
Score = 280 bits (718), Expect = 8e-74, Method: Composition-based stats.
Identities = 82/226 (36%), Positives = 110/226 (48%), Gaps = 9/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +LQV +++ + R SV L+AVSK IR AL+ GQ F EN LQE
Sbjct: 1 MDIAQRLQVVHERLRAAEHRFGRDPGSVKLLAVSKTQPVSAIRAALAAGQHAFGENYLQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L + FIG+LQSNK ++ FD TV R K A LS + ++ L
Sbjct: 61 ALDKQQALADTP-AEWHFIGALQSNKTRDVAGHFDWCHTVDRLKIARRLSQQRPEERPPL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
V IQVN E K+G++P + + +L + GLM +P + L
Sbjct: 120 NVCIQVNISGEASKAGVLPAGAAELAAQVAELPRLRLRGLMALPAPAEGLAAQRRPLAAL 179
Query: 178 SEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 180 RELQEHLVSSGLALDTLSMGMSGDLEAAVAEGATLVRIGTAIFGPR 225
>gi|194337101|ref|YP_002018895.1| alanine racemase domain protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309578|gb|ACF44278.1| alanine racemase domain protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 229
Score = 280 bits (718), Expect = 9e-74, Method: Composition-based stats.
Identities = 71/227 (31%), Positives = 111/227 (48%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +++I + I A R V L+AVSK + I+ A G ++F E+ +QE
Sbjct: 3 SIAANIETIREQIHAACIEAGRDPAGVRLIAVSKTHPASLIKEAFDAGHIVFGESYVQEF 62
Query: 62 KKK-WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K PL + ++ FIG LQSNK+ I+ +I + + TA LS ++ + +
Sbjct: 63 LEKCEDPLLAQLGIEWHFIGHLQSNKIRSIIGKVSLIHGIDKLSTAEELSKRALRNNLQV 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE 179
++VNT E K G+ P + + + GLM I P + F LL
Sbjct: 123 DYLLEVNTSGEASKYGMSPEELLSLAESLFTLPNITLRGLMTIASPDRVLAQQEFRLLRT 182
Query: 180 IAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ KLT+LSMGM+ DF AI GAT +R+G+ IFG R
Sbjct: 183 LLDALKPISPDPSKLTELSMGMSGDFREAIHEGATMIRVGTAIFGWR 229
>gi|145631538|ref|ZP_01787306.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
R3021]
gi|144982883|gb|EDJ90400.1| succinyl-diaminopimelate desuccinylase [Haemophilus influenzae
R3021]
Length = 252
Score = 280 bits (718), Expect = 9e-74, Method: Composition-based stats.
Identities = 74/226 (32%), Positives = 107/226 (47%), Gaps = 11/226 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + +QKIE + R +++V L+AVSK I A GQ F EN +QE
Sbjct: 1 MNIQHNLNLIQQKIETACKEKNRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQE 60
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K + +++ FIG LQSNK + FD ++T+ R K A L+ +
Sbjct: 61 GVEKIQYFESQNINLEWHFIGPLQSNKTRLVAEHFDWMQTLDRAKIADRLNEQRPTNKAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYL 176
L V IQ+N E KSGI P + L + GLM IP + F
Sbjct: 121 LNVLIQINISDEESKSGIQPEEMLTLAKHIENLPHLCLRGLMAIPAPTDKIAEQETVFRK 180
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+S++ + K + LSMGMT D AI G+T VRIG+ F
Sbjct: 181 MSDLFEQLKQALPNQQIDTLSMGMTDDMPSAIKCGSTMVRIGNCDF 226
>gi|227112383|ref|ZP_03826039.1| putative alanine racemase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 237
Score = 280 bits (718), Expect = 9e-74, Method: Composition-based stats.
Identities = 74/232 (31%), Positives = 108/232 (46%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ +Q+I +A+ R + ++L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDIRQQIAAAAVHCARAPEEITLLAVSKTKPVSAIEEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K +K + + FIG LQSNK + FD TV R + A LS +
Sbjct: 63 VEKIHYFQKNHPDTPLAWHFIGPLQSNKSRLVAENFDWFHTVDRLRIAQRLSEQRPTTLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V +Q+N E KSGIM + + L + GLM IP + + +
Sbjct: 123 PLNVLLQINISSEPSKSGIMVAELAELAASVAALPNLRLRGLMAIPAPETDYEKQLAVFK 182
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ A + LSMGMT D AI +G+T VRIG+ IFG R
Sbjct: 183 QMAVLLQTLSANYPHIDTLSMGMTDDMRAAITAGSTLVRIGTAIFGARDYSA 234
>gi|300024797|ref|YP_003757408.1| alanine racemase domain protein [Hyphomicrobium denitrificans ATCC
51888]
gi|299526618|gb|ADJ25087.1| alanine racemase domain protein [Hyphomicrobium denitrificans ATCC
51888]
Length = 226
Score = 280 bits (718), Expect = 9e-74, Method: Composition-based stats.
Identities = 102/215 (47%), Positives = 144/215 (66%), Gaps = 1/215 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++L+ + +I +A KR + L+AVSK D+ +R L+ GQ +F EN++QEA++K
Sbjct: 12 DRLKRVRHEIVAAAEAVKRSPADIELIAVSKTFDADAVRPVLAAGQRVFGENRVQEAERK 71
Query: 65 WIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W L++E+ DV+L IG LQSNK + V+LFDVI T+ REK A ++ E+ +Q R L ++
Sbjct: 72 WPELKREFADVELHLIGPLQSNKAKDAVALFDVIHTIDREKIARAVAEEISRQGRALKLF 131
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVNTG E QK+G+ P++ K FV CR +L + GLMCIPP P HF L+++A+E
Sbjct: 132 VQVNTGEEPQKAGVPPSEAKAFVDFCRSDLKLPIVGLMCIPPVDEEPAVHFAFLAKLAKE 191
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 192 GGLKSLSMGMSSDFETAIAFGATHVRVGSAIFGGR 226
>gi|114705826|ref|ZP_01438729.1| hypothetical protein FP2506_15209 [Fulvimarina pelagi HTCC2506]
gi|114538672|gb|EAU41793.1| hypothetical protein FP2506_15209 [Fulvimarina pelagi HTCC2506]
Length = 224
Score = 280 bits (718), Expect = 9e-74, Method: Composition-based stats.
Identities = 109/222 (49%), Positives = 145/222 (65%), Gaps = 1/222 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ K I + A R DSV+LVA+SK KI L G +F ENK+QE
Sbjct: 1 MAVADQYHAVKNAIAKAMADAGRKPDSVALVAISKTHGEDKILPLLEAGHRVFGENKVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW LR+ D++LR +G LQSNK + V+LFDVIE+V REK A ++ E+ KQ R
Sbjct: 61 SQAKWPTLRERFPDIELRLVGPLQSNKTGDAVALFDVIESVDREKIARAIAKEVEKQGRN 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y+QVNTG E QK+GI+P + FV CR ++ L +EGLMCIPP NP PHF LL++
Sbjct: 121 PRLYVQVNTGEEEQKAGILPKEAVAFVERCRSEHGLTIEGLMCIPPVDENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A E + KLSMGM+ D+E AI GATSVR+GS IFGER
Sbjct: 181 LAGEAGVEKLSMGMSGDYETAIQFGATSVRVGSAIFGERDYS 222
>gi|292487079|ref|YP_003529949.1| hypothetical protein EAMY_0591 [Erwinia amylovora CFBP1430]
gi|292900537|ref|YP_003539906.1| hypothetical protein EAM_2839 [Erwinia amylovora ATCC 49946]
gi|291200385|emb|CBJ47513.1| conserved hypothetical protein [Erwinia amylovora ATCC 49946]
gi|291552496|emb|CBA19541.1| UPF0001 protein yggS [Erwinia amylovora CFBP1430]
Length = 237
Score = 280 bits (717), Expect = 9e-74, Method: Composition-based stats.
Identities = 73/227 (32%), Positives = 106/227 (46%), Gaps = 9/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +Q+I +A R ++L+AVSK + + A++ GQ F EN +QE
Sbjct: 3 SIKHNLQQVRQRISTAAAKCGRDPQEITLLAVSKTKPASAVEEAVAAGQCCFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + FIG LQSNK + FD TV R + AS LS + L
Sbjct: 63 VDKI-QLLANPALAWHFIGPLQSNKSRLVAENFDWCHTVDRLRIASRLSQQRPDNLAPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
+ IQ+N E KSGIM + +L + GLM IP + + ++
Sbjct: 122 ILIQINISAEPSKSGIMLAELPALAQQIAALPRLKLRGLMAIPAPQDSYDSQLAVCQQMT 181
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 182 TAFKQLQQDYPGVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGARDY 228
>gi|225378092|ref|ZP_03755313.1| hypothetical protein ROSEINA2194_03752 [Roseburia inulinivorans DSM
16841]
gi|225210093|gb|EEG92447.1| hypothetical protein ROSEINA2194_03752 [Roseburia inulinivorans DSM
16841]
Length = 231
Score = 280 bits (717), Expect = 9e-74, Method: Composition-based stats.
Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L+ +++++ + A R ++ V+L+AVSK + ++ F ENK+QE
Sbjct: 2 LKDNLKNVEERVQEACDRAGRKREEVTLIAVSKTKPIEMLQEIYDENIRDFGENKVQELC 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + K D++ IG LQ NKV IV +I +V + A ++++ K++ +P+
Sbjct: 62 DKIEKMPK--DIKWHMIGHLQRNKVKYIVGQVALIHSVDSYRLAEEINIQAKKKNIIVPI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
++VN +E K GI V + + ++GLM I P + N + +F + +
Sbjct: 120 LVEVNIAHEESKFGISEEDAIQLVEEIAELENVRIKGLMTIAPYVENAEDNRLYFRKIKD 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + LSMGMT D+E+AI GAT VR+G+GIFG R
Sbjct: 180 LSVDIAAKNIDNVSMEILSMGMTGDYEVAIEEGATMVRVGTGIFGARNY 228
>gi|116621130|ref|YP_823286.1| alanine racemase domain-containing protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116224292|gb|ABJ83001.1| alanine racemase domain protein [Candidatus Solibacter usitatus
Ellin6076]
Length = 221
Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats.
Identities = 81/219 (36%), Positives = 112/219 (51%), Gaps = 7/219 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L + +IE +A A+R + L+AV+K+ + IR A G F EN +QE +
Sbjct: 4 LTERLTAVRLRIERAAEHARRNPAEILLLAVTKIFPASAIREAYDLGLRDFGENYVQEFE 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + IG LQSNK S+ LF I+TV K A L+ + R L V
Sbjct: 64 GKAPEVAGLPGARFHLIGHLQSNKSSKAAELFHSIQTVDSAKLARRLN----ESGRPLDV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSE 179
I+V E KSG+ P Q D + R LN+ GLM +PP + P+ F L E
Sbjct: 120 MIEVKLSGEDAKSGVDPAQLPDLIQATRACPNLNLRGLMTMPPWSEDPEAPRAIFRTLRE 179
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A E L LSMGM+ D E AI G+T VR+G+ +FG R
Sbjct: 180 LAAEHGLPGLSMGMSNDLETAIEEGSTCVRVGTALFGRR 218
>gi|165975509|ref|YP_001651102.1| hypothetical protein APJL_0052 [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|307249250|ref|ZP_07531247.1| hypothetical protein appser4_670 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|165875610|gb|ABY68658.1| hypothetical protein APJL_0052 [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|306858774|gb|EFM90833.1| hypothetical protein appser4_670 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 231
Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats.
Identities = 77/230 (33%), Positives = 108/230 (46%), Gaps = 10/230 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L KQ+I+ + R +V L+AVSK + I A+ GQ F EN +QE
Sbjct: 1 MSISQNLSEIKQQIQQISQQCGRD--NVRLLAVSKTKPVEAIEEAIVAGQTAFGENYVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ +++ FIG LQSNK + FD I+TV R K A L+ + K L
Sbjct: 59 GIEKIAYFAQQPNLEWHFIGPLQSNKTRLVAENFDWIQTVDRLKIAERLNAQRPKNKAPL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQ+N E KSGI P + Q L + GLM IP + +
Sbjct: 119 NVLIQINISDEASKSGIQPEGLDELAKAISQLPNLRLRGLMAIPKPESEVEQQKIALRKM 178
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ + + LSMGM+ D AI G+T VRIG+ IFG R
Sbjct: 179 QQLFDRLQAEFEGIDTLSMGMSDDMAAAIECGSTMVRIGTAIFGARDYSA 228
>gi|153004231|ref|YP_001378556.1| alanine racemase domain-containing protein [Anaeromyxobacter sp.
Fw109-5]
gi|152027804|gb|ABS25572.1| alanine racemase domain protein [Anaeromyxobacter sp. Fw109-5]
Length = 213
Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats.
Identities = 74/198 (37%), Positives = 105/198 (53%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V+LVAVSK + IR A GQ F EN QE ++K L +++ FIG+LQ+
Sbjct: 15 PAGVTLVAVSKTQPAAAIREAYEAGQRDFGENYAQEWREKADALADLPELRWHFIGALQT 74
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV + + TV RE+ A LS ++ V+++VNTG E K+G P +
Sbjct: 75 NKVKYLAGRVAYVHTVDREELARELSRRFAQKGAVARVFVEVNTGGEASKAGCAPGEVPA 134
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASG 204
R L + G+M IPP +P+PHF L + + +LSMGM+ D+ +A+ G
Sbjct: 135 LAAAIRDLPSLELVGVMGIPPPEDDPRPHFRALRALRDALGVRELSMGMSGDWRVAVEEG 194
Query: 205 ATSVRIGSGIFGERPCQT 222
AT VRIGS IFG R +
Sbjct: 195 ATFVRIGSAIFGARAPRA 212
>gi|307260503|ref|ZP_07542197.1| hypothetical protein appser12_780 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306869815|gb|EFN01598.1| hypothetical protein appser12_780 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 227
Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 111/229 (48%), Gaps = 10/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L KQ+I+ + R +V L+AVSK + I A++ GQ F EN +QE
Sbjct: 1 MSISQNLSEIKQQIQQISQQCGRD--NVRLLAVSKTKPVEAIEEAIAAGQTAFGENYVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ +++ FIG+LQSNK + FD I+TV R K A LS + L
Sbjct: 59 GVEKIAYFAQQPNLEWHFIGALQSNKTRLVAENFDWIQTVDRLKIAERLSAQRSANKAPL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQ+N E KSGI P + + Q L + GLM IP P+ +
Sbjct: 119 NVLIQINISDEAYKSGIQPEELDELAKAISQLPNLRLRGLMAIPKPESEPEQQKIALRKM 178
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + + LSMGM+ D AI G+T VRIG+ IFG R
Sbjct: 179 RQLFDRLQDEFEGIDTLSMGMSDDMAAAIECGSTMVRIGTAIFGTRYYS 227
>gi|225628362|ref|ZP_03786396.1| conserved hypothetical protein [Brucella ceti str. Cudo]
gi|254700452|ref|ZP_05162280.1| hypothetical protein Bsuib55_06309 [Brucella suis bv. 5 str. 513]
gi|254708339|ref|ZP_05170167.1| hypothetical protein BpinM_15650 [Brucella pinnipedialis
M163/99/10]
gi|254708808|ref|ZP_05170619.1| hypothetical protein BpinB_00826 [Brucella pinnipedialis B2/94]
gi|254714650|ref|ZP_05176461.1| hypothetical protein BcetM6_15197 [Brucella ceti M644/93/1]
gi|254717548|ref|ZP_05179359.1| hypothetical protein BcetM_14326 [Brucella ceti M13/05/1]
gi|256030334|ref|ZP_05443948.1| hypothetical protein BpinM2_06746 [Brucella pinnipedialis
M292/94/1]
gi|256160505|ref|ZP_05458194.1| hypothetical protein BcetM4_16004 [Brucella ceti M490/95/1]
gi|256255711|ref|ZP_05461247.1| hypothetical protein BcetB_15833 [Brucella ceti B1/94]
gi|256370212|ref|YP_003107723.1| alanine racemase [Brucella microti CCM 4915]
gi|260168008|ref|ZP_05754819.1| alanine racemase [Brucella sp. F5/99]
gi|261219382|ref|ZP_05933663.1| alanine racemase domain-containing protein [Brucella ceti M13/05/1]
gi|261222922|ref|ZP_05937203.1| alanine racemase domain-containing protein [Brucella ceti B1/94]
gi|261315839|ref|ZP_05955036.1| alanine racemase domain-containing protein [Brucella pinnipedialis
M163/99/10]
gi|261316301|ref|ZP_05955498.1| alanine racemase domain-containing protein [Brucella pinnipedialis
B2/94]
gi|261322444|ref|ZP_05961641.1| alanine racemase domain-containing protein [Brucella ceti
M644/93/1]
gi|261750953|ref|ZP_05994662.1| alanine racemase domain-containing protein [Brucella suis bv. 5
str. 513]
gi|261757453|ref|ZP_06001162.1| alanine racemase domain-containing protein [Brucella sp. F5/99]
gi|265987368|ref|ZP_06099925.1| alanine racemase domain-containing protein [Brucella pinnipedialis
M292/94/1]
gi|265998881|ref|ZP_06111438.1| alanine racemase domain-containing protein [Brucella ceti
M490/95/1]
gi|294851047|ref|ZP_06791723.1| YggS family pyridoxal phosphate enzyme [Brucella sp. NVSL 07-0026]
gi|225616208|gb|EEH13256.1| conserved hypothetical protein [Brucella ceti str. Cudo]
gi|256000375|gb|ACU48774.1| alanine racemase [Brucella microti CCM 4915]
gi|260921506|gb|EEX88159.1| alanine racemase domain-containing protein [Brucella ceti B1/94]
gi|260924471|gb|EEX91039.1| alanine racemase domain-containing protein [Brucella ceti M13/05/1]
gi|261295134|gb|EEX98630.1| alanine racemase domain-containing protein [Brucella ceti
M644/93/1]
gi|261295524|gb|EEX99020.1| alanine racemase domain-containing protein [Brucella pinnipedialis
B2/94]
gi|261304865|gb|EEY08362.1| alanine racemase domain-containing protein [Brucella pinnipedialis
M163/99/10]
gi|261737437|gb|EEY25433.1| alanine racemase domain-containing protein [Brucella sp. F5/99]
gi|261740706|gb|EEY28632.1| alanine racemase domain-containing protein [Brucella suis bv. 5
str. 513]
gi|262553570|gb|EEZ09339.1| alanine racemase domain-containing protein [Brucella ceti
M490/95/1]
gi|264659565|gb|EEZ29826.1| alanine racemase domain-containing protein [Brucella pinnipedialis
M292/94/1]
gi|294821690|gb|EFG38686.1| YggS family pyridoxal phosphate enzyme [Brucella sp. NVSL 07-0026]
Length = 226
Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats.
Identities = 115/224 (51%), Positives = 150/224 (66%), Gaps = 2/224 (0%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++Q
Sbjct: 1 MSDVVANLNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW LR+ W ++L IG LQSNK ++ V+LFDVIETV REK A+ L+ E+ KQ +
Sbjct: 61 EAQGKWPALREAWASIELHLIGPLQSNKAADAVALFDVIETVDREKIAAALASEIRKQGK 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL
Sbjct: 121 SPKLYVQVNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLE 180
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ARE + KLSMGM+ D+E AI GATSVR+G+ IFG R
Sbjct: 181 KLAREAHVEKLSMGMSGDYETAIGFGATSVRVGAAIFGGRAYSA 224
>gi|146284278|ref|YP_001174431.1| TIM-barrel fold family protein [Pseudomonas stutzeri A1501]
gi|145572483|gb|ABP81589.1| predicted enzyme with a TIM-barrel fold [Pseudomonas stutzeri
A1501]
Length = 229
Score = 279 bits (716), Expect = 1e-73, Method: Composition-based stats.
Identities = 79/224 (35%), Positives = 109/224 (48%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +I +A R +V L+AVSK + IR A + G F EN LQEA
Sbjct: 3 TIEKNIAKVGARIREAAQAVGREPATVGLLAVSKTQPAAAIRDAFAAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + + FIG +QSNK I FD + +V R K A LS + + L
Sbjct: 63 LDKQAEL-DDLPLTWHFIGPIQSNKTKAIAEHFDWVHSVDRLKIAQRLSDQRPEALPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+ +QVN E KSG P + + +L + GLMCIP +P + F L
Sbjct: 122 ICLQVNVSGEASKSGCAPQEVQQLARAITALPRLRLRGLMCIPAPSEDPAEQRAAFARLR 181
Query: 179 EIARE--CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ E L LSMGM++D E AIA GAT VRIG+ +FG R
Sbjct: 182 QLRDELALDLDTLSMGMSQDLEAAIAEGATWVRIGTALFGARDY 225
>gi|331018485|gb|EGH98541.1| hypothetical protein PLA106_20818 [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 228
Score = 279 bits (716), Expect = 1e-73, Method: Composition-based stats.
Identities = 77/224 (34%), Positives = 107/224 (47%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ AKR SV ++A SK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAAKRDPASVGMLAGSKTKPASDLREAYTAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L + FIG +QSNK I F + +V R K A LS + + L
Sbjct: 63 LGKQLELADLP-LCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEGLEPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+ IQVN E KSG P +L + GLM IP +P F +
Sbjct: 122 ICIQVNVSGESSKSGCAPQDLPALAAAINALPRLKLRGLMAIPEPTNDPAAQAASFAAVR 181
Query: 179 EIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 TLQEQLNLSLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|258625609|ref|ZP_05720491.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258582111|gb|EEW06978.1| conserved hypothetical protein [Vibrio mimicus VM603]
Length = 236
Score = 279 bits (716), Expect = 1e-73, Method: Composition-based stats.
Identities = 79/231 (34%), Positives = 110/231 (47%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE++ R + SV L+AVSK + I A Q F EN +QE
Sbjct: 3 SIQQNIEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAEQRCFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + ++ FIG LQSNK + FD + T+ REK A L+ +
Sbjct: 63 VDKIRYFAEHHPQLALEWHFIGPLQSNKTRLVAEHFDWVHTIEREKIAVRLNEQRPADMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVNT E KSGI P Q L L + GLM IP + + F
Sbjct: 123 PLQVLIQVNTSGEASKSGIEPEQLFTLAELISGLPNLTLRGLMSIPENVPDYPAQLAAFT 182
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+E+ ++ + LSMGM+ D + AI +G+T VRIG+ IFGER
Sbjct: 183 QLAELQQQLAQKYPHIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYS 233
>gi|220936080|ref|YP_002514979.1| alanine racemase domain protein [Thioalkalivibrio sp. HL-EbGR7]
gi|219997390|gb|ACL73992.1| alanine racemase domain protein [Thioalkalivibrio sp. HL-EbGR7]
Length = 236
Score = 279 bits (716), Expect = 1e-73, Method: Composition-based stats.
Identities = 76/225 (33%), Positives = 115/225 (51%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++G++L + +I +A+ R +++L+AVSK ++ +R ++CGQ F EN +QE
Sbjct: 3 TIGDRLDTVRTRIHEAALRHGRDPATITLLAVSKTQPAEALREVMACGQRAFGENYVQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + FIG LQSNK I L + ++ R+K A LS + ++ L
Sbjct: 63 ADKADALADLRP-EWHFIGPLQSNKTRLIAGLAHWVHSIERDKIARRLSEQRPGEAVDLQ 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
V +QVN E KSG+ P + +L + GLM IP + + F L
Sbjct: 122 VCLQVNLDAEASKSGLAPEALPALAEVVAGLPRLRLRGLMAIPAPSEDFATQRRAFARLR 181
Query: 179 EIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + +L LSMGM+ D E AIA GAT VR+G+ IFG R
Sbjct: 182 EMQEDLIRRGHQLDTLSMGMSGDLEAAIAEGATIVRVGTAIFGSR 226
>gi|119775610|ref|YP_928350.1| hypothetical protein Sama_2477 [Shewanella amazonensis SB2B]
gi|119768110|gb|ABM00681.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
Length = 235
Score = 279 bits (716), Expect = 2e-73, Method: Composition-based stats.
Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 12/232 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + +Q+I +A ++ R + L+AVSK + I+ A GQ +F EN +QE
Sbjct: 3 TIADRLSLAQQRIVQAAQISSRNPSEIKLLAVSKTKPASDIQAAYDAGQRLFGENYVQEG 62
Query: 62 KKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L +++ FIG LQSNK + FD + T+ REK A L+ + + L
Sbjct: 63 VQKITDLTSPCPNIEWHFIGPLQSNKSRPVAEHFDWLHTLDREKLAIRLNEQRPAELAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
V IQVN E KSG+ P + +L + GLM IP + + +
Sbjct: 123 NVLIQVNISDEESKSGVKPEDITALADAVCRLPRLRLRGLMAIPAPTDDKERAQTELANM 182
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + ++ LSMGM+ D ELAI +G+T VR+GS IFGER
Sbjct: 183 QRLFKSLQQSHGTLGQIDTLSMGMSGDLELAIDNGSTLVRVGSAIFGERDYS 234
>gi|15605814|ref|NP_213191.1| hypothetical protein aq_274 [Aquifex aeolicus VF5]
gi|6226352|sp|O66631|Y274_AQUAE RecName: Full=UPF0001 protein aq_274
gi|2982978|gb|AAC06592.1| hypothetical protein aq_274 [Aquifex aeolicus VF5]
Length = 228
Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats.
Identities = 80/229 (34%), Positives = 122/229 (53%), Gaps = 10/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ +L ++I+ + A R ++ L+ SK V + IR +CG ++ EN++QE
Sbjct: 1 MNACERLSRVLERIQKACERAGRGENCAKLLGASKTVPPEVIREFYNCGLKVYGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK+ L K+ D++ FIG LQ+NKV ++ +I ++ R+ A + K +
Sbjct: 61 FLKKYEAL-KDLDLEWHFIGRLQTNKVKYLMGKVVLIHSLDRKNLADEIQKRAFKNNIVQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V I+VN G E K G+ P K+ + + V GLM IPP + NP +P+F L
Sbjct: 120 DVLIEVNVGGEETKGGVEPENLKELFEYTLELPNVKVLGLMTIPPYLENPEDVRPYFRKL 179
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ E + L LSMGM+ DFE+AI GAT VRIG+ +FGER
Sbjct: 180 RELRDELQREYNVALPHLSMGMSHDFEVAIEEGATIVRIGTLLFGERKY 228
>gi|86747509|ref|YP_484005.1| hypothetical protein RPB_0383 [Rhodopseudomonas palustris HaA2]
gi|86570537|gb|ABD05094.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
HaA2]
Length = 221
Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats.
Identities = 99/213 (46%), Positives = 131/213 (61%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +Q+I + A+R +DSV+L+AVSK ++ I L+ GQ +F EN++QEAK KW
Sbjct: 9 LAAVEQEIARACQEARRDRDSVTLIAVSKTFEADAILPVLAAGQRVFGENRVQEAKAKWP 68
Query: 67 PL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
PL D L IG LQSNK E V+LFD I +V RE L+ + R + +++Q
Sbjct: 69 PLLESHPDTALHLIGPLQSNKAKEAVALFDAIHSVDRESLCEALAKVLPASGRAVELFVQ 128
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
+NTG E QK+GI P F+ CR ++ L + GLMCIPP P PHF L ++IA+
Sbjct: 129 INTGEEPQKAGIAPQDADAFIAACRDRFGLTIAGLMCIPPVDEAPAPHFALTAKIAKRNG 188
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L KLSMGM+ DF AIA GAT VR+GS IFG R
Sbjct: 189 LAKLSMGMSSDFATAIAFGATHVRVGSAIFGHR 221
>gi|27375734|ref|NP_767263.1| hypothetical protein bll0623 [Bradyrhizobium japonicum USDA 110]
gi|27348872|dbj|BAC45888.1| bll0623 [Bradyrhizobium japonicum USDA 110]
Length = 229
Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats.
Identities = 95/215 (44%), Positives = 127/215 (59%), Gaps = 1/215 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
N L + +I + A+R + SV+L+AVSK D+ I ++ GQ +F EN++QEAK K
Sbjct: 15 NALAAVEAEIARACKDARRDRASVTLIAVSKTFDADAITPVIAAGQRVFGENRVQEAKGK 74
Query: 65 WIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W L D+ L IG LQSNK E V+LFD I +V R L+ E+ Q + ++
Sbjct: 75 WPALTSVYPDIALHLIGPLQSNKAKEAVALFDAIHSVDRPSICQALAKEIESQKKHPQLF 134
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+Q+NTG E QK+G+ P + F+ CR Y L + GLMCIPP P HF L ++IA
Sbjct: 135 VQINTGEEPQKAGVAPGEADAFLASCRDTYGLTISGLMCIPPVDEPPAAHFALTAKIAAR 194
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LT LSMGM+ DF AI GAT VR+GS IFG R
Sbjct: 195 NGLTNLSMGMSADFATAIMLGATHVRVGSAIFGHR 229
>gi|17986525|ref|NP_539159.1| phosphate regulon sensor protein PHOR [Brucella melitensis bv. 1
str. 16M]
gi|225853252|ref|YP_002733485.1| hypothetical protein BMEA_A1858 [Brucella melitensis ATCC 23457]
gi|254694453|ref|ZP_05156281.1| hypothetical protein Babob3T_07292 [Brucella abortus bv. 3 str.
Tulya]
gi|256045404|ref|ZP_05448298.1| hypothetical protein Bmelb1R_12992 [Brucella melitensis bv. 1 str.
Rev.1]
gi|256114372|ref|ZP_05455105.1| hypothetical protein Bmelb3E_16205 [Brucella melitensis bv. 3 str.
Ether]
gi|256263260|ref|ZP_05465792.1| alanine racemase domain-containing protein [Brucella melitensis bv.
2 str. 63/9]
gi|260565704|ref|ZP_05836187.1| alanine racemase domain-containing protein [Brucella melitensis bv.
1 str. 16M]
gi|261214767|ref|ZP_05929048.1| alanine racemase domain-containing protein [Brucella abortus bv. 3
str. Tulya]
gi|265991833|ref|ZP_06104390.1| alanine racemase domain-containing protein [Brucella melitensis bv.
1 str. Rev.1]
gi|265995672|ref|ZP_06108229.1| alanine racemase domain-containing protein [Brucella melitensis bv.
3 str. Ether]
gi|17982130|gb|AAL51423.1| phosphate regulon sensor protein phor [Brucella melitensis bv. 1
str. 16M]
gi|225641617|gb|ACO01531.1| conserved hypothetical protein [Brucella melitensis ATCC 23457]
gi|260151077|gb|EEW86172.1| alanine racemase domain-containing protein [Brucella melitensis bv.
1 str. 16M]
gi|260916374|gb|EEX83235.1| alanine racemase domain-containing protein [Brucella abortus bv. 3
str. Tulya]
gi|262766956|gb|EEZ12574.1| alanine racemase domain-containing protein [Brucella melitensis bv.
3 str. Ether]
gi|263002789|gb|EEZ15192.1| alanine racemase domain-containing protein [Brucella melitensis bv.
1 str. Rev.1]
gi|263093224|gb|EEZ17321.1| alanine racemase domain-containing protein [Brucella melitensis bv.
2 str. 63/9]
gi|326409811|gb|ADZ66876.1| phosphate regulon sensor protein PHOR [Brucella melitensis M28]
gi|326539529|gb|ADZ87744.1| conserved hypothetical protein [Brucella melitensis M5-90]
Length = 226
Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats.
Identities = 114/224 (50%), Positives = 149/224 (66%), Gaps = 2/224 (0%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++Q
Sbjct: 1 MSDVVANLNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW LR+ W ++L IG LQSNK ++ V+LFD IETV REK A+ L+ E+ KQ +
Sbjct: 61 EAQGKWPALREAWASIELHLIGPLQSNKAADAVALFDAIETVDREKIAAALASEIRKQGK 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL
Sbjct: 121 SPKLYVQVNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLE 180
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ARE + KLSMGM+ D+E AI GATSVR+G+ IFG R
Sbjct: 181 KLAREAHVEKLSMGMSGDYETAIGFGATSVRVGAAIFGGRAYSA 224
>gi|254363058|ref|ZP_04979117.1| hypothetical protein MHA_2645 [Mannheimia haemolytica PHL213]
gi|153094723|gb|EDN75513.1| hypothetical protein MHA_2645 [Mannheimia haemolytica PHL213]
Length = 225
Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats.
Identities = 78/226 (34%), Positives = 111/226 (49%), Gaps = 10/226 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L Q+I+ + +R +V L+AVSK + I+ A+ GQ F EN +QE
Sbjct: 1 MSIAENLSQIHQQIQQISEQYQRD--NVRLLAVSKTKPVEAIQAAIEAGQRAFGENYVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K +++ FIG LQSNK + + FD I+TV R K A L+ + L
Sbjct: 59 AVEKIEFFANRPELEWHFIGPLQSNKTKLVAAYFDWIQTVDRLKIAERLNEQRPADKAPL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQ+N E KSGI P++ Q L + GLM IP P+ F +
Sbjct: 119 NVLIQINISDEASKSGIEPDEMLPLAQAISQLPNLKLRGLMAIPKPESEPEQQKVAFRKM 178
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + LSMGM+ D + AI G+T VRIG+ IFG R
Sbjct: 179 QLLFNRLQTEFDDIDTLSMGMSDDMQAAIECGSTMVRIGTAIFGAR 224
>gi|62290673|ref|YP_222466.1| hypothetical protein BruAb1_1788 [Brucella abortus bv. 1 str.
9-941]
gi|82700588|ref|YP_415162.1| hypothetical protein BAB1_1816 [Brucella melitensis biovar Abortus
2308]
gi|189024885|ref|YP_001935653.1| hypothetical protein BAbS19_I16970 [Brucella abortus S19]
gi|237816174|ref|ZP_04595169.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
gi|254689961|ref|ZP_05153215.1| hypothetical protein Babob68_07289 [Brucella abortus bv. 6 str.
870]
gi|254698112|ref|ZP_05159940.1| hypothetical protein Babob28_10483 [Brucella abortus bv. 2 str.
86/8/59]
gi|254730996|ref|ZP_05189574.1| hypothetical protein Babob42_07322 [Brucella abortus bv. 4 str.
292]
gi|256258216|ref|ZP_05463752.1| hypothetical protein Babob9C_12896 [Brucella abortus bv. 9 str.
C68]
gi|260547091|ref|ZP_05822829.1| alanine racemase domain-containing protein [Brucella abortus NCTC
8038]
gi|260755496|ref|ZP_05867844.1| alanine racemase domain-containing protein [Brucella abortus bv. 6
str. 870]
gi|260758719|ref|ZP_05871067.1| alanine racemase domain-containing protein [Brucella abortus bv. 4
str. 292]
gi|260762553|ref|ZP_05874890.1| alanine racemase domain-containing protein [Brucella abortus bv. 2
str. 86/8/59]
gi|260884517|ref|ZP_05896131.1| alanine racemase domain-containing protein [Brucella abortus bv. 9
str. C68]
gi|297249065|ref|ZP_06932773.1| YggS family pyridoxal phosphate enzyme [Brucella abortus bv. 5 str.
B3196]
gi|62196805|gb|AAX75105.1| conserved hypothetical protein TIGR00044 [Brucella abortus bv. 1
str. 9-941]
gi|82616689|emb|CAJ11772.1| Protein of unknown function UPF0001 [Brucella melitensis biovar
Abortus 2308]
gi|189020457|gb|ACD73179.1| hypothetical protein BAbS19_I16970 [Brucella abortus S19]
gi|237788636|gb|EEP62849.1| conserved hypothetical protein [Brucella abortus str. 2308 A]
gi|260095456|gb|EEW79334.1| alanine racemase domain-containing protein [Brucella abortus NCTC
8038]
gi|260669037|gb|EEX55977.1| alanine racemase domain-containing protein [Brucella abortus bv. 4
str. 292]
gi|260672979|gb|EEX59800.1| alanine racemase domain-containing protein [Brucella abortus bv. 2
str. 86/8/59]
gi|260675604|gb|EEX62425.1| alanine racemase domain-containing protein [Brucella abortus bv. 6
str. 870]
gi|260874045|gb|EEX81114.1| alanine racemase domain-containing protein [Brucella abortus bv. 9
str. C68]
gi|297174198|gb|EFH33555.1| YggS family pyridoxal phosphate enzyme [Brucella abortus bv. 5 str.
B3196]
Length = 226
Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats.
Identities = 114/224 (50%), Positives = 149/224 (66%), Gaps = 2/224 (0%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++Q
Sbjct: 1 MSDVVANLNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW LR+ W ++L IG LQSNK ++ V+LFD IETV REK A+ L+ E+ KQ +
Sbjct: 61 EARGKWPALREAWASIELHLIGPLQSNKAADAVALFDAIETVDREKIAAALASEIRKQGK 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL
Sbjct: 121 SPKLYVQVNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLE 180
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ARE + KLSMGM+ D+E AI GATSVR+G+ IFG R
Sbjct: 181 KLAREAHVEKLSMGMSGDYETAIGFGATSVRVGAAIFGGRAYSA 224
>gi|110596798|ref|ZP_01385088.1| Protein of unknown function UPF0001 [Chlorobium ferrooxidans DSM
13031]
gi|110341485|gb|EAT59945.1| Protein of unknown function UPF0001 [Chlorobium ferrooxidans DSM
13031]
Length = 229
Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats.
Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ L+ +++I+ + I A R DSV L+AV+K + +++ AL GQ+ F E+ +QE
Sbjct: 3 SIAANLEAIREQIKAACIKAGRQPDSVRLIAVTKTKPAAQVKEALDAGQLEFGESYVQEF 62
Query: 62 KKKW-IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K P+ + + FIG LQSNKV I+ ++ + + TA LS + + +
Sbjct: 63 LEKSGDPILENSPIVWHFIGHLQSNKVRSIIDKVTLVHGIDKLSTAEELSKRAQQHNLQI 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE 179
++VNT E K G+ P++ + + + GLM I P + + + F L
Sbjct: 123 DYLLEVNTSGESSKYGMPPDKLLSTAESLFKLPNITLRGLMTIASPDIESARREFRTLRL 182
Query: 180 IAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ KLT+LSMGM+ DFE AI GAT +R+GS IFG R
Sbjct: 183 LLESLKKIAPHPQKLTELSMGMSGDFEAAINEGATMIRVGSSIFGWR 229
>gi|253689812|ref|YP_003019002.1| alanine racemase domain protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756390|gb|ACT14466.1| alanine racemase domain protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 237
Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 110/232 (47%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ +Q+I +A R + ++L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDIRQQIATAAAHCARAPEDITLLAVSKTKPVSAIEEAIAAGQQAFGENYVQEG 62
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K ++ + ++ FIG LQSNK + FD TV R + A LS +
Sbjct: 63 VEKIHYFQENHPDTPLEWHFIGPLQSNKSRLVAENFDWFHTVDRLRIAQRLSEQRPATLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V +Q+N E KSGIM ++ + L + GLM IP + + F
Sbjct: 123 PLNVLLQINISGEPSKSGIMVDELAELAAGVAALPNLRLRGLMAIPAPETDYEQQLVVFK 182
Query: 176 LLSEIAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ + + + LSMGMT D AI +G+T VRIG+ IFG R
Sbjct: 183 QMAALFQTLSATYPHIDTLSMGMTDDMRAAITAGSTLVRIGTAIFGARDYAA 234
>gi|327533820|pdb|3R79|A Chain A, Crystal Structure Of An Uncharactertized Protein From
Agrobacterium Tumefaciens
gi|327533821|pdb|3R79|B Chain B, Crystal Structure Of An Uncharactertized Protein From
Agrobacterium Tumefaciens
Length = 244
Score = 279 bits (714), Expect = 2e-73, Method: Composition-based stats.
Identities = 108/217 (49%), Positives = 146/217 (67%), Gaps = 1/217 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L+ +Q+I + A + R V+LVAVSK D++ I+ + GQ +F EN++QEA+
Sbjct: 6 IEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAEAIQPVIDAGQRVFGENRVQEAQ 65
Query: 63 KKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW L+ K D++L IG LQSNK ++ V+LFDV+E++ REK A LS E +Q R L
Sbjct: 66 GKWPALKEKTSDIELHLIGPLQSNKAADAVALFDVVESIDREKIARALSEECARQGRSLR 125
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
Y+QVNTG E QK+GI P +T FV CR + +L VEGL CIPPA NP PHF LL+++A
Sbjct: 126 FYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLPVEGLXCIPPAEENPGPHFALLAKLA 185
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+C L KLS G + DFE A+ GATSVR+GS IFG R
Sbjct: 186 GQCGLEKLSXGXSGDFETAVEFGATSVRVGSAIFGSR 222
>gi|254472228|ref|ZP_05085628.1| conserved hypothetical protein TIGR00044 [Pseudovibrio sp. JE062]
gi|211958511|gb|EEA93711.1| conserved hypothetical protein TIGR00044 [Pseudovibrio sp. JE062]
Length = 225
Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats.
Identities = 103/217 (47%), Positives = 138/217 (63%), Gaps = 1/217 (0%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L+ K+ I + A+RP SV+L+AVSK ++ I+ L GQ +F EN++QEA KW
Sbjct: 8 RLKEVKENIGKAEKDAERPNGSVTLIAVSKTFEASAIKPVLEAGQRVFGENRVQEAMGKW 67
Query: 66 IPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
LR+E++ V+L IG LQSNK E + FDVI TV R+K A L EM KQ + ++I
Sbjct: 68 PGLREEFEGVELHLIGPLQSNKAKEAIQTFDVIHTVDRDKIAKALKAEMDKQGKTPKLFI 127
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVNTG E QK+GI P + F+ CR +Y L +EGLMCIPP P HF LL +IA+
Sbjct: 128 QVNTGEEEQKAGIPPKEADAFIAKCRDEYGLEIEGLMCIPPVDEAPGMHFALLEKIAKRN 187
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L KLSMGM+ D+ +A+ GAT VR+GS +FG R
Sbjct: 188 GLEKLSMGMSSDYPIAVQHGATHVRVGSAVFGARDYS 224
>gi|91974918|ref|YP_567577.1| hypothetical protein RPD_0438 [Rhodopseudomonas palustris BisB5]
gi|91681374|gb|ABE37676.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
BisB5]
Length = 221
Score = 278 bits (713), Expect = 3e-73, Method: Composition-based stats.
Identities = 98/213 (46%), Positives = 131/213 (61%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +Q+I + A+R + SV+L+AVSK D+ I L+ GQ +F EN++QEAK KW
Sbjct: 9 LAAVEQEIAQACKEARRERGSVTLIAVSKTFDADSILPVLAAGQRVFGENRVQEAKAKWP 68
Query: 67 PL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L +L IG LQSNK E V+LFD I +V RE A LS + R + +++Q
Sbjct: 69 ALVAGHPGTELHLIGPLQSNKAKEAVALFDAIHSVDRESLAEALSKALPLAGRAVELFVQ 128
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
+NTG E QK+G+ P F+ CR+++ L + GLMCIPP P PHF L ++IAR
Sbjct: 129 INTGEEPQKAGVAPQDADAFLTACRERWGLTIAGLMCIPPVDEAPAPHFALTAKIARRNG 188
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+KLSMGM+ DF AI GAT VR+GS IFG R
Sbjct: 189 LSKLSMGMSADFATAIEFGATHVRVGSAIFGHR 221
>gi|227823848|ref|YP_002827821.1| alanine racemase domain protein [Sinorhizobium fredii NGR234]
gi|227342850|gb|ACP27068.1| alanine racemase domain protein [Sinorhizobium fredii NGR234]
Length = 219
Score = 278 bits (713), Expect = 3e-73, Method: Composition-based stats.
Identities = 111/219 (50%), Positives = 148/219 (67%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +L +I S A R + V+LVAVSK D++ IR A++ GQ +F EN++QE
Sbjct: 1 MEVQERLNDVMSRIRASEAAADRAQGGVTLVAVSKTFDAEAIRPAIAAGQRVFGENRVQE 60
Query: 61 AKKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW L R+ ++L IG LQSNK ++ V+LFDVIET+ REK A ++ E+ +Q R
Sbjct: 61 AQAKWPELKRETAGLELHLIGPLQSNKTADAVALFDVIETIDREKVARTVAAEIKRQGRK 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+Y+QVNTG E QK+GI P T FV LCR + L++EGLMCIPP NP PHF LL++
Sbjct: 121 PRLYVQVNTGLEAQKAGIAPQDTLAFVDLCRLELGLDIEGLMCIPPLDENPGPHFALLAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +C L +LSMGM+ DFE AI GATSVR+GS IFG R
Sbjct: 181 LAAKCGLNRLSMGMSGDFETAIGFGATSVRVGSAIFGAR 219
>gi|90415261|ref|ZP_01223195.1| hypothetical protein GB2207_08096 [marine gamma proteobacterium
HTCC2207]
gi|90332584|gb|EAS47754.1| hypothetical protein GB2207_08096 [marine gamma proteobacterium
HTCC2207]
Length = 257
Score = 278 bits (713), Expect = 3e-73, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 115/227 (50%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ N + ++I+ SA R + + L+AVSK ++ IR A+ G FAEN LQEA
Sbjct: 30 IENNIAGVSKRIDQSAAECGRDPNDILLLAVSKTRSAEYIRQAMDAGLSHFAENYLQEAL 89
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L E ++ FIG LQSNK F + +V R K A LS + + L +
Sbjct: 90 EKIAELEGE-NLCWHFIGPLQSNKTRNAAENFSWVHSVDRLKIAQRLSDQRPESLGPLNI 148
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSE 179
+QVN E KSG + + + + L + GLM IP A + + F L+E
Sbjct: 149 CLQVNIDNEPSKSGFLVDALLPIALQIAKLPNLRLRGLMAIPRATNSVQEQQAAFNKLAE 208
Query: 180 IAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ KL LSMGM+ D E AI+ G+T VR+G+ IFG+R
Sbjct: 209 LCQQINQSLDNSEKLDTLSMGMSGDLEAAISQGSTMVRVGTDIFGKR 255
>gi|237747221|ref|ZP_04577701.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
gi|229378572|gb|EEO28663.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
Length = 239
Score = 278 bits (713), Expect = 3e-73, Method: Composition-based stats.
Identities = 78/232 (33%), Positives = 116/232 (50%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + LQ +Q+I+++A +R +V L+AVSK + I A GQ F EN QEA
Sbjct: 3 TISDHLQEIRQRIQSAARTTERNPSTVHLLAVSKTQPTNAILEAADAGQKAFGENYEQEA 62
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + +R + ++ FIG +QSNK I FD + +V REK A LS +
Sbjct: 63 VSKILAIRASRPDLKLEWHFIGPIQSNKTRSIAEHFDWVHSVDREKIARRLSDQRPAALA 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
L + +QVN E KSGI P +L + GLM IP +P + F
Sbjct: 123 PLNICLQVNISGEASKSGIHPENLLGMAKTVSAMPRLKLRGLMAIPEPESSPDRQREPFK 182
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + + + + LSMGM+ D + AI GAT+VRIG+ IFG+R +
Sbjct: 183 AMKVLFNQLRKAGYDVDTLSMGMSDDMDAAIEEGATTVRIGTAIFGKRNYSS 234
>gi|167745614|ref|ZP_02417741.1| hypothetical protein ANACAC_00306 [Anaerostipes caccae DSM 14662]
gi|317472789|ref|ZP_07932100.1| alanine racemase domain-containing protein [Anaerostipes sp.
3_2_56FAA]
gi|167654926|gb|EDR99055.1| hypothetical protein ANACAC_00306 [Anaerostipes caccae DSM 14662]
gi|316899708|gb|EFV21711.1| alanine racemase domain-containing protein [Anaerostipes sp.
3_2_56FAA]
Length = 230
Score = 278 bits (713), Expect = 3e-73, Method: Composition-based stats.
Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++ ++ K+ ++ + A R V+++AVSK I + CG + F ENK+QE
Sbjct: 2 LIDQYKLVKENVKAACEKAGRDPKEVTVIAVSKTKPLSMIEELMDCGVMDFGENKVQEIM 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KK+ ++ V+ IG Q+NKV IV ++ +V K A +S E +K +PV
Sbjct: 62 KKYEEIKS--PVRWHMIGHFQTNKVKYIVDKVALVHSVDSVKLARQISKEALKHKIQVPV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
IQVN E KSG M + + + + V+GLM I P + NP+ +F + +
Sbjct: 120 LIQVNLAREETKSGFMEEELFGALEEISRLPGVLVQGLMQIAPFVENPENNRVYFRRMRQ 179
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + K + LSMGMT D+++A+ G+T VR+G+GIFGER
Sbjct: 180 LFVDIKEKNFDNIAMNILSMGMTNDYQVAVEEGSTMVRVGTGIFGERDY 228
>gi|322513925|ref|ZP_08067002.1| YggS family pyridoxal phosphate enzyme [Actinobacillus ureae ATCC
25976]
gi|322120260|gb|EFX92213.1| YggS family pyridoxal phosphate enzyme [Actinobacillus ureae ATCC
25976]
Length = 231
Score = 278 bits (713), Expect = 3e-73, Method: Composition-based stats.
Identities = 77/230 (33%), Positives = 111/230 (48%), Gaps = 10/230 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L Q+I+ + R +V L+AVSK + I A+S GQ F EN +QE
Sbjct: 1 MSISQNLSQINQQIQQISQQFNRT--NVRLLAVSKTKPVEAIEEAISAGQTAFGENYVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ +++ FIG LQSNK + FD I+TV R K A L+ + + L
Sbjct: 59 GVEKIAYFAQQPNLEWHFIGPLQSNKTRLVAENFDWIQTVDRLKIAERLNAQCPENKAPL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQ+N E KSGI P + Q L + GLM IP + + +
Sbjct: 119 NVLIQINISDEASKSGIQPEGLDELAKAISQLPNLRLRGLMAIPKPESEAEQQKIALHKM 178
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ + + LSMGM+ D + AI G+T VRIG+ IFG R T
Sbjct: 179 QQLFDRLQAEFEGIDTLSMGMSDDIQSAIECGSTMVRIGTAIFGARDYST 228
>gi|91976780|ref|YP_569439.1| hypothetical protein RPD_2306 [Rhodopseudomonas palustris BisB5]
gi|91683236|gb|ABE39538.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
BisB5]
Length = 271
Score = 278 bits (712), Expect = 4e-73, Method: Composition-based stats.
Identities = 75/228 (32%), Positives = 113/228 (49%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S L+ ++I + R + V L+ V+K V ++ +R+A + G FAENKLQEA
Sbjct: 24 SFAANLKTVLERIAAACDRCGRNVNDVRLLPVTKTVPARVLRLAYAAGITDFAENKLQEA 83
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K+ L ++ IG LQ+NKV +V + + A L+ + + R L
Sbjct: 84 RDKFAILGDLP-IRWSIIGHLQTNKVKYLVRFASEFHALDSLRLADELNRRLEAEGRDLD 142
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V++QVNT E K G+ PN F+ + +L GLM + + + F LL
Sbjct: 143 VFVQVNTSGEASKYGLHPNDVIAFIERLPEFPRLKPRGLMTLAIFSADTARVRACFRLLR 202
Query: 179 EIAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ LT+LSMGM+ DFE+AI GA VR+G IFG RP
Sbjct: 203 DLRDRAVPIHPGLTQLSMGMSGDFEVAIEEGANVVRVGQAIFGARPTS 250
>gi|316931734|ref|YP_004106716.1| alanine racemase domain-containing protein [Rhodopseudomonas
palustris DX-1]
gi|315599448|gb|ADU41983.1| alanine racemase domain protein [Rhodopseudomonas palustris DX-1]
Length = 219
Score = 278 bits (712), Expect = 4e-73, Method: Composition-based stats.
Identities = 94/207 (45%), Positives = 134/207 (64%), Gaps = 1/207 (0%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE- 71
+I + A+R + V+L+AVSK ++ IR L+ GQ +F EN++QEAK KW L +E
Sbjct: 13 EIARACADARRDRSEVTLIAVSKTFEADAIRPVLAAGQRVFGENRVQEAKGKWPALVEEY 72
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
+L IG LQSNK + V+LFD I +V R+ LS + + R L +++Q+NTG E
Sbjct: 73 PGTELHLIGPLQSNKAKDAVALFDAIHSVDRDSLCEALSKALPQAGRRLDLFVQINTGEE 132
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSM 191
QK+GI P+ F++ C++++ L + GLMCIPP P PHF L ++IAR L+KLSM
Sbjct: 133 PQKAGIAPHDADAFLVACQERWGLTICGLMCIPPVDEAPAPHFALCAKIARRNGLSKLSM 192
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DF++AI GAT VR+GS IFG R
Sbjct: 193 GMSADFDIAIQFGATHVRVGSAIFGHR 219
>gi|163851005|ref|YP_001639048.1| alanine racemase domain-containing protein [Methylobacterium
extorquens PA1]
gi|163662610|gb|ABY29977.1| alanine racemase domain protein [Methylobacterium extorquens PA1]
Length = 247
Score = 278 bits (712), Expect = 4e-73, Method: Composition-based stats.
Identities = 100/218 (45%), Positives = 130/218 (59%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + I +A +R SV LVAVSK V ++ I AL GQ IF EN +QE+
Sbjct: 26 DVAAGLAEVRTSIRRAAEDNERDPASVHLVAVSKTVPAEGILPALESGQRIFGENYVQES 85
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K KW LR+ DV+L +G LQSNK E V LFDVI ++ R A+ L+ E+ + R
Sbjct: 86 KAKWPALRERFPDVELHLVGPLQSNKAREAVELFDVIHSLDRLSLAAALAKEIERSGRAP 145
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ IQVNTG E QK+G+ P+Q + CR+ + L + GLMCIPPA P PHF LL+ I
Sbjct: 146 KLLIQVNTGDETQKAGVSPDQVDVLLSECRETHNLAIHGLMCIPPAEDPPSPHFALLARI 205
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A L LSMGM+ DF AI GA+ VR+G+ IFG R
Sbjct: 206 AERHGLPILSMGMSADFPAAIQMGASHVRVGTAIFGRR 243
>gi|54294912|ref|YP_127327.1| hypothetical protein lpl1991 [Legionella pneumophila str. Lens]
gi|53754744|emb|CAH16231.1| hypothetical protein lpl1991 [Legionella pneumophila str. Lens]
Length = 231
Score = 278 bits (712), Expect = 4e-73, Method: Composition-based stats.
Identities = 82/227 (36%), Positives = 116/227 (51%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++ I + + + R +SV L+AVSK + IR A G F EN QE
Sbjct: 1 MSISQNINKVRELITQTELSSNRQPNSVLLLAVSKEQSPELIREAFQQGIRHFGENYFQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++K + LR + FIG +QSNK I F+ + ++ R KTA LL+ +Q L
Sbjct: 61 AQEKILALRDLP-ICWHFIGPIQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V +Q+N E KSGI P D + +Q L + GLM IPP N + F L
Sbjct: 120 NVCLQINLTGETTKSGIPPEHAIDLALEVKQLPNLQLRGLMTIPPQQNNMQTQYNLFLKL 179
Query: 178 SEIAR------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+++ K+ LSMGM+ D AI +G+T VRIG IFGER
Sbjct: 180 NQLKESINKALHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGER 226
>gi|283835288|ref|ZP_06355029.1| pyridoxal phosphate enzyme, YggS family [Citrobacter youngae ATCC
29220]
gi|291068446|gb|EFE06555.1| pyridoxal phosphate enzyme, YggS family [Citrobacter youngae ATCC
29220]
Length = 234
Score = 278 bits (712), Expect = 4e-73, Method: Composition-based stats.
Identities = 75/229 (32%), Positives = 111/229 (48%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAHVRDKISAAATRCGRSSEEVTLLAVSKTKPASAIEEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K R++ D+Q FIG LQSNK + FD T+ R + A+ LS + +
Sbjct: 63 VDKIRYFREQGVNDLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIAARLSEQRPAELPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + ++ + GLM IP + F + +
Sbjct: 123 LNVLIQINISDENSKSGIPLTELDALAAEVAALPRITLRGLMAIPAPESDYVRQFEVAQQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A R + LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFTGLKTRYPGIDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGARDY 231
>gi|52842231|ref|YP_096030.1| pyridoxal-5'-phosphate dependent enzyme family protein [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|52629342|gb|AAU28083.1| pyridoxal-5'-phosphate dependent enzyme family [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|307610739|emb|CBX00346.1| hypothetical protein LPW_20721 [Legionella pneumophila 130b]
Length = 231
Score = 278 bits (712), Expect = 4e-73, Method: Composition-based stats.
Identities = 82/227 (36%), Positives = 115/227 (50%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++ I + + R +SV L+AVSK + IR A G F EN QE
Sbjct: 1 MSISQNINKVRELITQTESSSNRQPNSVLLLAVSKEQSPELIREAFQQGIRHFGENYFQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++K + LR + FIG +QSNK I F+ + ++ R KTA LL+ +Q L
Sbjct: 61 AQEKILALRDLP-ICWHFIGPIQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V +Q+N E KSGI P D + +Q L + GLM IPP N + F L
Sbjct: 120 NVCLQINLTGETTKSGIPPEHAIDLALEVKQLPNLQLRGLMTIPPQQNNMQTQYNLFLKL 179
Query: 178 SEIAR------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+++ K+ LSMGM+ D AI +G+T VRIG IFGER
Sbjct: 180 NQLKESINKALHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGER 226
>gi|319780906|ref|YP_004140382.1| alanine racemase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317166794|gb|ADV10332.1| alanine racemase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 220
Score = 278 bits (712), Expect = 4e-73, Method: Composition-based stats.
Identities = 110/211 (52%), Positives = 140/211 (66%), Gaps = 1/211 (0%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
K KI + A R +V+LVAVSK D+ I + GQ +F EN++QEA+ KW L
Sbjct: 10 AVKAKIAAAEREAGREAGAVTLVAVSKTFDAADIGPVIEAGQRVFGENRVQEAQAKWPDL 69
Query: 69 RKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
+ D++L IG LQSNK E V+LFDVIETV REK A+ L+ E+ KQ R +Y+QVN
Sbjct: 70 KDAFPDIELHLIGPLQSNKAREAVALFDVIETVDREKIAAELAKEIAKQGRAPKLYVQVN 129
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLT 187
TG E QK+GI P FV CR+ + L +EGLMCIPPA NP PHF LL ++++E +
Sbjct: 130 TGSEPQKAGIEPRDAVAFVARCREVHGLAIEGLMCIPPADENPGPHFALLEKLSKEANVA 189
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 190 KLSMGMSGDYETAIAFGATSVRVGSAIFGTR 220
>gi|329113972|ref|ZP_08242739.1| Hypothetical protein APO_0746 [Acetobacter pomorum DM001]
gi|326696719|gb|EGE48393.1| Hypothetical protein APO_0746 [Acetobacter pomorum DM001]
Length = 232
Score = 278 bits (711), Expect = 4e-73, Method: Composition-based stats.
Identities = 95/218 (43%), Positives = 135/218 (61%), Gaps = 1/218 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++L +Q I+ +A A R SV+LVAVSK ++ AL+ GQ +F EN++QEA
Sbjct: 12 LADRLTAVRQNIDAAAHTAGRNPASVTLVAVSKFHPLSSVQEALAAGQRVFGENRVQEAA 71
Query: 63 KKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ LR D++L IG LQ+NK + V + DVIE++ R + A L+ K+
Sbjct: 72 SKFPTLRATYPDLRLHLIGGLQTNKARDAVRIADVIESLDRPELAEALAKAADKEGLLPE 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ I+VNTG E QK G+ + F+ CRQ++ ++GLMCIPPAM +P PHF LL +A
Sbjct: 132 LLIEVNTGDEPQKFGVPREKADSFIRTCRQQFGAKLQGLMCIPPAMQDPVPHFRLLRSMA 191
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+E L +SMGM+ D+ AIA GAT VR+G+ IFG RP
Sbjct: 192 QEHGLPVISMGMSADYPQAIAEGATLVRVGTAIFGPRP 229
>gi|330886255|gb|EGH20156.1| hypothetical protein PSYMO_01090 [Pseudomonas syringae pv. mori
str. 301020]
Length = 228
Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats.
Identities = 78/224 (34%), Positives = 107/224 (47%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAANREPASVGLLAVSKTKPASDLREAYTAGLRNFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L + FIG +QSNK I F + +V R K A LS + + L
Sbjct: 63 LGKQLELSDLP-LCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEALEPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
+ IQVN E KSG P +L + GLM IP +P F +
Sbjct: 122 ICIQVNVSDEASKSGCSPQDLPALAAAIIALPRLKLRGLMAIPEPTDDPAAQHASFAAVR 181
Query: 179 EIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 TLQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|152971903|ref|YP_001337012.1| PLP-binding domain-containing protein [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238896482|ref|YP_002921220.1| putative enzyme with PLP-binding domain [Klebsiella pneumoniae
NTUH-K2044]
gi|262042603|ref|ZP_06015759.1| YggS family pyridoxal phosphate enzyme [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|329998591|ref|ZP_08303175.1| pyridoxal phosphate enzyme, YggS family [Klebsiella sp. MS 92-3]
gi|150956752|gb|ABR78782.1| putative enzyme with PLP-binding domain [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238548802|dbj|BAH65153.1| putative enzyme with PLP-binding domain [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|259040037|gb|EEW41152.1| YggS family pyridoxal phosphate enzyme [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|328538610|gb|EGF64710.1| pyridoxal phosphate enzyme, YggS family [Klebsiella sp. MS 92-3]
Length = 233
Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats.
Identities = 76/230 (33%), Positives = 107/230 (46%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISGAAARCGRAPEEVTLLAVSKTKPASAIEEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K ++ +Q FIG LQSNK + FD TV R K A+ L+ +
Sbjct: 63 VEKINHFQQAGVSGLQWHFIGPLQSNKSRLVAEHFDWCHTVDRLKIATRLNEQRPAHLPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + L + GLM IP F + +
Sbjct: 123 LKVLIQINISDEQSKSGIPLEALDGLAAEIAELPHLELRGLMAIPAPESEYVRQFAVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFARLKTRYPTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|257465703|ref|ZP_05630074.1| hypothetical protein AM202_04262 [Actinobacillus minor 202]
gi|257451363|gb|EEV25406.1| hypothetical protein AM202_04262 [Actinobacillus minor 202]
Length = 228
Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats.
Identities = 75/230 (32%), Positives = 110/230 (47%), Gaps = 10/230 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L +Q+I+ A +R + L+AVSK + I A+ GQ F EN +QE
Sbjct: 1 MSISQNLSQIQQRIQQIAHQCQRS--DIRLLAVSKTKPVQAIEEAIQAGQKAFGENYVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ +++ FIG LQSNK + FD I+TV R K A L+ + L
Sbjct: 59 GVEKINYFKENEEIEWHFIGPLQSNKSRLVAEHFDWIQTVDRLKIAERLNEQRPVGKAPL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQ+N E KSGI P + + L + GLM IP +P+ +
Sbjct: 119 NVLIQINISDESSKSGIAPEEMLELAHKIASLPNLRLRGLMAIPKPESDPEQQKVALRKM 178
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ + + LSMGM+ D + AI G+T VRIG+ IFG R
Sbjct: 179 EQLFHRLQQDFSGIDTLSMGMSDDMQSAIECGSTMVRIGTAIFGARDYGN 228
>gi|126666565|ref|ZP_01737543.1| hypothetical protein MELB17_20686 [Marinobacter sp. ELB17]
gi|126628953|gb|EAZ99572.1| hypothetical protein MELB17_20686 [Marinobacter sp. ELB17]
Length = 234
Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats.
Identities = 79/232 (34%), Positives = 120/232 (51%), Gaps = 11/232 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + + Q+IE + + A R SV L+AVSK + ++R A++ GQ F EN LQEA
Sbjct: 3 SIADNINSVTQRIEKATLQAGRKPHSVRLLAVSKTRQADELREAVAAGQQDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L+ +++ FIG +QSNK ++I S F + V R K A L+ + L
Sbjct: 63 LDKIANLQDIPELRWHFIGPIQSNKTAQIASAFCWVHGVERLKIARRLNDQRDTALPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNP--KPHFYLLS 178
+ +QVN E KSG N+ + QL + GLM IP P G + F ++
Sbjct: 123 ICLQVNIDNEPSKSGCSLNELPALAAAIAELPQLTLRGLMAIPNPERGEAALRESFRAMN 182
Query: 179 ----EIAREC----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ ++ L LSMGM+ D ELAI G+T VR+G+ +FG R ++
Sbjct: 183 NALIQLRQDQPGTGPLDTLSMGMSDDLELAIGEGSTWVRVGTAVFGPRQQKS 234
>gi|50122967|ref|YP_052134.1| putative alanine racemase [Pectobacterium atrosepticum SCRI1043]
gi|49613493|emb|CAG76944.1| putative alanine racemase [Pectobacterium atrosepticum SCRI1043]
Length = 270
Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats.
Identities = 71/225 (31%), Positives = 104/225 (46%), Gaps = 11/225 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + +I + R +V L+ VSK ++R+A + G I ENK+QEA KW
Sbjct: 29 NLAAVQMRIAAACHRVGRDPATVRLLPVSKTKPESRLRMAYTAGCRILGENKVQEAYGKW 88
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++ D+Q IG LQ+NK + + + + A L + + R L V++Q
Sbjct: 89 EAMQDLADLQWSVIGHLQTNKAKLVARFASEFQALDSLRLAEALDRRLHVEGRSLDVFVQ 148
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
VNT E K G+ P F+ L V GLM + + F L +
Sbjct: 149 VNTSGEASKYGLSPEDVPAFIQALPAFSALRVRGLMTLALFSSEAERVRQCFIRLRNLRD 208
Query: 183 --------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ +L +LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 209 RLQQNAPVDIRLDELSMGMSGDFEIAIEEGATVVRVGQAIFGARP 253
>gi|91794033|ref|YP_563684.1| hypothetical protein Sden_2682 [Shewanella denitrificans OS217]
gi|91716035|gb|ABE55961.1| Protein of unknown function UPF0001 [Shewanella denitrificans
OS217]
Length = 235
Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats.
Identities = 80/233 (34%), Positives = 111/233 (47%), Gaps = 16/233 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L++ + +I + RP SV+L+AVSK I A GQ F EN +QE
Sbjct: 3 TIADRLKLAQCRIAQAEQEHHRPAQSVNLLAVSKTKPLSDIIQAYQAGQRRFGENYVQEG 62
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K I L ++ D++ FIG LQSNK I F + T+ REK A L + + L
Sbjct: 63 QQKIIDLAQDYPDIEWHFIGPLQSNKTRIIAEHFHWLHTLGREKIAQRLHQQRPQDKPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK--------- 171
V IQVN E K+G+ + + +L + G+M IP N
Sbjct: 123 NVCIQVNISGEDSKAGVTLAEVPALANIIHSLPKLKLRGIMAIPSQQANFDNAGQAQAQL 182
Query: 172 -PHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L K L LSMGM+ D LAIA G+T VRIGS IFG R
Sbjct: 183 SKEFSQLKACFDTLKQTYPQLDTLSMGMSDDLSLAIAHGSTLVRIGSAIFGAR 235
>gi|256061832|ref|ZP_05451967.1| hypothetical protein Bneo5_15933 [Brucella neotomae 5K33]
gi|261325836|ref|ZP_05965033.1| alanine racemase domain-containing protein [Brucella neotomae 5K33]
gi|261301816|gb|EEY05313.1| alanine racemase domain-containing protein [Brucella neotomae 5K33]
Length = 226
Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats.
Identities = 115/224 (51%), Positives = 149/224 (66%), Gaps = 2/224 (0%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K I + A+R SV+LVAVSK D+ IR AL GQ +F EN++Q
Sbjct: 1 MSDVVANLNAVKAVIARAEKEARRENGSVTLVAVSKTFDTHAIRPALDAGQRVFGENRVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW LR+ W ++L IG LQSNK ++ V+LFDVIETV REK A+ L+ E+ KQ +
Sbjct: 61 EAQGKWPALREAWASIELHLIGPLQSNKAADAVALFDVIETVDREKIAAALASEIRKQGK 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL
Sbjct: 121 SPKLYVQVNTGLEPQKAGIPPQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLE 180
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ARE + KLSMGM+ D+E AI GATSVR+G+ IFG R
Sbjct: 181 KLAREAHVEKLSMGMSGDYETAIGFGATSVRVGAAIFGGRAYSA 224
>gi|242281265|ref|YP_002993394.1| alanine racemase domain protein [Desulfovibrio salexigens DSM 2638]
gi|242124159|gb|ACS81855.1| alanine racemase domain protein [Desulfovibrio salexigens DSM 2638]
Length = 234
Score = 278 bits (711), Expect = 5e-73, Method: Composition-based stats.
Identities = 74/226 (32%), Positives = 113/226 (50%), Gaps = 10/226 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + K+++ + + A R + V+++AVSK+ + I + + G F E+ +QEA
Sbjct: 8 LIENISEVKEEVAQACLRAGRKPEEVTVMAVSKLHAASDIEILYNAGHRCFGESYVQEAL 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L D+ FIG LQS K ++ F + +V K A LL+ + +
Sbjct: 68 AKQEELSG-LDIDWHFIGGLQSKKAKQVAGKFSAVHSVDSSKLAGLLNKKAEALDVVQNI 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQVNT E QK G+ V + L + GLM +PP G+P +P+F L
Sbjct: 127 LIQVNTACEGQKCGVTEETLPALVEEIQGYKNLKLIGLMALPPFFGDPEGARPYFARLRM 186
Query: 180 IAR------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ KL +LSMGMT DF +AI G+T +R+G+ IFG RP
Sbjct: 187 LSEGMEKLFGIKLPELSMGMTGDFRVAIEEGSTMIRVGTKIFGTRP 232
>gi|209520451|ref|ZP_03269211.1| alanine racemase domain protein [Burkholderia sp. H160]
gi|209499096|gb|EDZ99191.1| alanine racemase domain protein [Burkholderia sp. H160]
Length = 240
Score = 278 bits (711), Expect = 6e-73, Method: Composition-based stats.
Identities = 79/228 (34%), Positives = 108/228 (47%), Gaps = 9/228 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L ++I +A A R SV+L+AVSK + +R A + GQ F EN +QE+
Sbjct: 12 LAHNLADVHERIARAAQAAGRDAQSVALLAVSKTFPADAVRAAHAAGQRAFGENYVQESL 71
Query: 63 KKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L ++ FIG LQSNK + FD + +V R K A LS + L
Sbjct: 72 DKIRTLADLRASLEWHFIGPLQSNKTRPVAEHFDWVHSVDRLKIAQRLSEQRPDDLPPLN 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---YLLS 178
V +QVN E KSG+ + D + +L + GLM IP G+ L
Sbjct: 132 VCLQVNISGEASKSGVTVAEAADIAQQIAELPKLRLRGLMSIPEPAGDLDEQRAPHRELR 191
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ + L LSMGM+ D E A+ GAT VRIG+ IFG R
Sbjct: 192 ELFERLRNDGLALDTLSMGMSEDLEAAVLEGATIVRIGTAIFGARDYS 239
>gi|167765522|ref|ZP_02437586.1| hypothetical protein CLOSS21_00016 [Clostridium sp. SS2/1]
gi|317498473|ref|ZP_07956767.1| alanine racemase domain-containing protein [Lachnospiraceae
bacterium 5_1_63FAA]
gi|167712707|gb|EDS23286.1| hypothetical protein CLOSS21_00016 [Clostridium sp. SS2/1]
gi|291558990|emb|CBL37790.1| pyridoxal phosphate enzyme, YggS family [butyrate-producing
bacterium SSC/2]
gi|316894166|gb|EFV16354.1| alanine racemase domain-containing protein [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 231
Score = 277 bits (710), Expect = 6e-73, Method: Composition-based stats.
Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + K+ +E + R V+++AVSK + + + F ENK+QE +
Sbjct: 2 LIERYNEVKKHVEEACKRVGRDPREVTVIAVSKTKPLEMVEELRKEKVLDFGENKVQEIR 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RFLP 121
K+ + W V+ IG LQ+NK+ IV +I +V K A + E K + +P
Sbjct: 62 DKYANIS--WPVRWHLIGHLQTNKIKYIVDKVALIHSVDSIKLAQAIDKEAAKHDVKEVP 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+ IQVN +E K G+ P D V + ++GLM I P + +P + +F +
Sbjct: 120 ILIQVNFAHEDTKFGLNPEDVFDVVKEISALEHVKIKGLMQIAPFVDDPEDNRKYFRAMK 179
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ ++ LSMGMT D+E+A+ GAT VR+G+ IFGER
Sbjct: 180 QLSVDINNKNFDNVDMSILSMGMTNDYEIAVEEGATMVRVGTAIFGERNY 229
>gi|160880494|ref|YP_001559462.1| alanine racemase domain-containing protein [Clostridium
phytofermentans ISDg]
gi|160429160|gb|ABX42723.1| alanine racemase domain protein [Clostridium phytofermentans ISDg]
Length = 253
Score = 277 bits (710), Expect = 6e-73, Method: Composition-based stats.
Identities = 69/251 (27%), Positives = 111/251 (44%), Gaps = 32/251 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + QKIE + + R K+ V+L+AVSK + + A G F ENK+QE
Sbjct: 2 IQDNITNVLQKIEAACKRSNRSKEEVTLIAVSKTKPFEMLMEAYHAGLREFGENKVQELC 61
Query: 63 KKWIPLRKE---------------------WDVQLRFIGSLQSNKVSEIVSLFDVIETVS 101
K E ++ IG LQ NKV IV +I +V
Sbjct: 62 DKCEKFVPESSSAPISITQLDNSSYDSNLSPEINWHMIGHLQRNKVKYIVDKVKLIHSVD 121
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161
+ A + +E K+ + + +++N E K G+ P+ + + + V+GLM
Sbjct: 122 SFRLAEQIDIEAKKKGVLVDILVEINIADEESKFGVKPSAVETLIREIASLSSICVKGLM 181
Query: 162 CIPPAMGNPKP---HFYLLSEIA--------RECKLTKLSMGMTRDFELAIASGATSVRI 210
+ P N + +F + ++ + LSMGMT D+E+AI G+T VR+
Sbjct: 182 TVAPFTENAEENRTYFNKMHQLYVDINEKNIDNVSMKILSMGMTGDYEVAIEEGSTMVRV 241
Query: 211 GSGIFGERPCQ 221
G+GIFGER
Sbjct: 242 GTGIFGERNYS 252
>gi|54297941|ref|YP_124310.1| hypothetical protein lpp1996 [Legionella pneumophila str. Paris]
gi|53751726|emb|CAH13148.1| hypothetical protein lpp1996 [Legionella pneumophila str. Paris]
Length = 230
Score = 277 bits (710), Expect = 6e-73, Method: Composition-based stats.
Identities = 82/227 (36%), Positives = 119/227 (52%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++ I + + + R +SV L+AVSK S+ IR A G F EN QE
Sbjct: 1 MSISQNIKKVRELITQTELSSNRQPNSVLLLAVSKEQSSELIREAFQQGIRHFGENYFQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++K + L K+ + FIG +QSNK I F+ + ++ R KTA LL+ +Q +
Sbjct: 61 AQEKILAL-KDLPICWHFIGPIQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPI 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V +Q+N E KSGI P D + +Q L + GLM IPP N + F L
Sbjct: 120 NVCLQINLAGETTKSGIPPEHAIDLALEVKQLPNLQLRGLMTIPPPQNNMQTQYDLFLKL 179
Query: 178 SEIAR------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+++ K+ LSMGM+ D AI +G+T VRIG IFGER
Sbjct: 180 NQLMESINKTLHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGER 226
>gi|21674628|ref|NP_662693.1| hypothetical protein CT1814 [Chlorobium tepidum TLS]
gi|21647829|gb|AAM73035.1| conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 229
Score = 277 bits (710), Expect = 6e-73, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 109/227 (48%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L +++I + A R +D V+L+AVSK + IR A GQ F E+ +QE
Sbjct: 3 SISSNLTAVREQIAEACRKAGRREDEVTLIAVSKTKSAAAIREAWDAGQREFGESYVQEF 62
Query: 62 KKKWI-PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K P V FIG LQSNKV +IV ++ + + TA LS + +
Sbjct: 63 LEKVEAPELSGLPVSWHFIGHLQSNKVRQIVDKVTMVHGIDKVSTAKELSKRAGQHDLTV 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE 179
++VN E K G P+ C + + GLM I PA + F L +
Sbjct: 123 DYLLEVNVSRESTKYGFSPDSVLQAAEECFALPNVRLRGLMTIASPAPSEARREFAELRQ 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + LT+LSMGM+ DFE AI GAT +RIG+ IFG R
Sbjct: 183 TLDKLRQNAPEPSLLTELSMGMSGDFEEAILEGATMIRIGTAIFGWR 229
>gi|153008428|ref|YP_001369643.1| alanine racemase domain-containing protein [Ochrobactrum anthropi
ATCC 49188]
gi|151560316|gb|ABS13814.1| alanine racemase domain protein [Ochrobactrum anthropi ATCC 49188]
Length = 250
Score = 277 bits (710), Expect = 6e-73, Method: Composition-based stats.
Identities = 116/224 (51%), Positives = 155/224 (69%), Gaps = 2/224 (0%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K I N+ A+R K SV+LVAVSK D+++IR L GQ +F EN++Q
Sbjct: 25 MSDIVANLNTVKAAIANAEEEAQRDKASVTLVAVSKTFDAEEIRPVLDAGQRVFGENRVQ 84
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW LR ++ ++L IG LQSNK ++ V+LFDVIETV REK A+ L++E+ KQ++
Sbjct: 85 EAQAKWPGLRDDYSGIELHLIGPLQSNKAADAVALFDVIETVDREKIAAALAVEIKKQNK 144
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI P + FV CR+++ L +EGLMCIPPA NP PHF LL
Sbjct: 145 APKLYVQVNTGLEEQKAGIAPKEAVAFVERCRKEHGLAIEGLMCIPPADENPGPHFALLE 204
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ARE ++ KLSMGM+ D+E AI GATSVR+GS IFG R
Sbjct: 205 KLAREAQVEKLSMGMSGDYETAIGFGATSVRVGSAIFGGRSYAN 248
>gi|77361519|ref|YP_341094.1| PLP-binding domain-containing protein [Pseudoalteromonas
haloplanktis TAC125]
gi|76876430|emb|CAI87652.1| conserved protein of unknown function ; putative enzyme with
PLP-binding domain [Pseudoalteromonas haloplanktis
TAC125]
Length = 237
Score = 277 bits (710), Expect = 6e-73, Method: Composition-based stats.
Identities = 76/225 (33%), Positives = 111/225 (49%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L +I +A A+R + ++L+AVSK S I A GQ F E+ +QEA
Sbjct: 12 TIAERLTSAYARIAVAAKNAQRNSNEITLLAVSKTKPSADIIAAYKHGQRQFGESYVQEA 71
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D+ FIG +QSNK + + + F +++V R K A L+ + L
Sbjct: 72 VDKIAQLHAYSDIIWHFIGPIQSNKSALVAANFAWVQSVDRIKIAKRLNSQRPADKAALN 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
V IQVN E KSG N+ + Q QL + GLM IP + +F L
Sbjct: 132 VLIQVNISNEEAKSGCQLNEVAELASFINQCEQLTLRGLMAIPAKSDDITTQTQYFKQLQ 191
Query: 179 EIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ LSMGM+ D E AI++G+T VRIG+ IFG R
Sbjct: 192 TCFDKLQTQYPQVDTLSMGMSNDVEAAISAGSTMVRIGTDIFGTR 236
>gi|254465811|ref|ZP_05079222.1| conserved hypothetical protein TIGR00044 [Rhodobacterales bacterium
Y4I]
gi|206686719|gb|EDZ47201.1| conserved hypothetical protein TIGR00044 [Rhodobacterales bacterium
Y4I]
Length = 216
Score = 277 bits (710), Expect = 7e-73, Method: Composition-based stats.
Identities = 94/215 (43%), Positives = 124/215 (57%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K +I + A R SV L+AVSK+ ++++ L G F ENK+QEA KW
Sbjct: 3 LDEIKSRIAKAEADAGRAPGSVKLIAVSKVQPNERVEAVLEEGHRCFGENKVQEAAGKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ +D + L IG LQ+NK + + LFD I +V R K A+ L+ + ++IQ
Sbjct: 63 AFAERFDGIDLHLIGPLQTNKARQAMELFDSIHSVDRPKLANTLARLAQELGTCPDLFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G+MP F+ CR L V+GLMCIPP P HF LL++IA+
Sbjct: 123 VNTGEEEQKAGVMPADADAFIAECRALD-LPVKGLMCIPPVDEEPSLHFALLAKIAKRNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 182 LQGLSMGMSGDFETAIALGATHVRVGSAIFGARTY 216
>gi|119385486|ref|YP_916542.1| alanine racemase domain-containing protein [Paracoccus
denitrificans PD1222]
gi|119375253|gb|ABL70846.1| alanine racemase domain protein [Paracoccus denitrificans PD1222]
Length = 217
Score = 277 bits (710), Expect = 7e-73, Method: Composition-based stats.
Identities = 89/216 (41%), Positives = 127/216 (58%), Gaps = 2/216 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +++I + + R V+L+AVSK+ ++ L GQ +F EN +QEA KW
Sbjct: 3 LDEIRRRISAAETASGRAAGEVTLIAVSKVQPPDRVEAVLDAGQRVFGENYVQEAAGKWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+ + ++L IG LQ+NK+ + LFD I T+ R A+ L+ ++ + +++Q
Sbjct: 63 GWRERFAGIELHMIGPLQTNKLKPALELFDAIHTLDRPSLATKLARQVQVRGACPQLFVQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI+P++ F+ CR L + GLMCIPP +P PHF L +IA
Sbjct: 123 VNTGAEPQKAGILPDEADAFIAQCRALD-LAISGLMCIPPEDRDPVPHFRDLRDIAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L LSMGM+ DFE AIA GAT VRIGS IFG R +
Sbjct: 182 LAGLSMGMSADFETAIAEGATHVRIGSAIFGARDYR 217
>gi|264676326|ref|YP_003276232.1| hypothetical protein CtCNB1_0190 [Comamonas testosteroni CNB-2]
gi|262206838|gb|ACY30936.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 275
Score = 277 bits (710), Expect = 7e-73, Method: Composition-based stats.
Identities = 74/225 (32%), Positives = 105/225 (46%), Gaps = 11/225 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +++I + R SV L+ VSK +R+A + G + ENK+QEA KW
Sbjct: 30 NLATVQERIAAACQRVGRDPASVRLLPVSKTKPQASLRLAYAAGCRLLGENKVQEAFGKW 89
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++ D++ IG LQ+NK + + + + A L + Q R L V++Q
Sbjct: 90 ESMQDLADLRWSVIGHLQTNKARLVARFASEFQALDSLRVAEALDRHLQAQGRSLDVFVQ 149
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIAR 182
VNT E K G+ P DF+ L V GLM + + F LL E+
Sbjct: 150 VNTSGEASKYGLSPEAVPDFIQQLPVFSALRVRGLMTLALFSAETERVRRCFILLRELRD 209
Query: 183 ECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ L LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 210 RLQQSAPAGIELDALSMGMSGDFEIAIEEGATVVRVGQAIFGARP 254
>gi|206579525|ref|YP_002236597.1| alanine racemase family [Klebsiella pneumoniae 342]
gi|206568583|gb|ACI10359.1| alanine racemase family [Klebsiella pneumoniae 342]
Length = 233
Score = 277 bits (710), Expect = 7e-73, Method: Composition-based stats.
Identities = 76/230 (33%), Positives = 107/230 (46%), Gaps = 10/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISGAAARCGRAPEEVTLLAVSKTKPASAIEEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K ++ +Q FIG LQSNK + FD TV R K A+ L+ +
Sbjct: 63 VEKINHFQQAGVSGLQWHFIGPLQSNKSRLVAEHFDWCHTVDRLKIATRLNEQRPAHLPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + L + GLM IP F + +
Sbjct: 123 LKVLIQINISDEQSKSGIPLEALDGLAAEIAELPHLELRGLMAIPAPESEYVRQFAVAQQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFARLKTRYPTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 232
>gi|121602346|ref|YP_988440.1| hypothetical protein BARBAKC583_0102 [Bartonella bacilliformis
KC583]
gi|120614523|gb|ABM45124.1| conserved hypothetical protein TIGR00044 [Bartonella bacilliformis
KC583]
Length = 226
Score = 277 bits (710), Expect = 7e-73, Method: Composition-based stats.
Identities = 108/216 (50%), Positives = 143/216 (66%), Gaps = 1/216 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ KQ+I NS +R DSV L+AVSK V + KI L GQ FAEN++QEA +K
Sbjct: 10 EAWKNTKQEIANSCKEYQRSLDSVELIAVSKTVPADKIIPLLQAGQSCFAENRVQEAAEK 69
Query: 65 WIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W LR+++ ++L IG LQSNK +E V +FDVI+TV REK A LS EM KQ + P Y
Sbjct: 70 WPYLRQQFSPIELHLIGPLQSNKTAEAVKIFDVIQTVDREKIAKSLSEEMHKQKKHFPCY 129
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVN G E QKSG+ P DFV C+ Y L++ GLM IPP NP P+F LL+++A++
Sbjct: 130 VQVNIGLEPQKSGLAPEDVVDFVAHCKNHYGLDIVGLMAIPPIEDNPGPYFALLAKLAKK 189
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
LTKLSMGM+ DF+ A+ G+ +RIGS +FG+RP
Sbjct: 190 SGLTKLSMGMSNDFQTALQFGSNVLRIGSALFGQRP 225
>gi|124268943|ref|YP_001022947.1| hypothetical protein Mpe_A3759 [Methylibium petroleiphilum PM1]
gi|124261718|gb|ABM96712.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 238
Score = 277 bits (709), Expect = 9e-73, Method: Composition-based stats.
Identities = 80/226 (35%), Positives = 113/226 (50%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +K+Q +I + A RP SV+L+AVSK + +R AL+ GQ F EN +QEA
Sbjct: 3 TIASKIQEVSGRIARACDAAGRPVASVTLLAVSKTFGADTVREALAAGQTRFGENYVQEA 62
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L ++ IG LQSNK + FD + +V R K A LS + L
Sbjct: 63 LDKMAALADVRARLEWHLIGPLQSNKTRAVAEAFDWVHSVDRLKIAQRLSEQRPDALPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
V +QVN E KSG+ P++ ++ +L + GLM IP G+ + L
Sbjct: 123 QVCLQVNVSGEASKSGLAPDEVEEVARAVATLPRLRLRGLMAIPEPAGDLSAQRRPHRAL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + L LSMGMT D E A+ GAT VR+G+ IFG R
Sbjct: 183 HELLERLQAGGLALDTLSMGMTADLEAAVLEGATLVRVGTAIFGGR 228
>gi|289625048|ref|ZP_06458002.1| hypothetical protein PsyrpaN_07912 [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289647863|ref|ZP_06479206.1| hypothetical protein Psyrpa2_08942 [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330865795|gb|EGH00504.1| hypothetical protein PSYAE_00805 [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|331009665|gb|EGH89721.1| hypothetical protein PSYTB_08206 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 228
Score = 277 bits (709), Expect = 9e-73, Method: Composition-based stats.
Identities = 78/224 (34%), Positives = 107/224 (47%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAANREPASVGLLAVSKTKPAGDLREAYTAGLRNFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L + FIG +QSNK I F + +V R K A LS + + L
Sbjct: 63 LGKQLELSDLP-LCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEALEPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
+ IQVN E KSG P +L + GLM IP +P F +
Sbjct: 122 ICIQVNVSGEASKSGCTPQDLPALAAAIIALPRLKLRGLMAIPEPTDDPAAQHASFAAVR 181
Query: 179 EIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 TLQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|325275650|ref|ZP_08141548.1| alanine racemase domain protein [Pseudomonas sp. TJI-51]
gi|324099216|gb|EGB97164.1| alanine racemase domain protein [Pseudomonas sp. TJI-51]
Length = 231
Score = 277 bits (709), Expect = 9e-73, Method: Composition-based stats.
Identities = 78/222 (35%), Positives = 102/222 (45%), Gaps = 6/222 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + L +I ++A A R SV L+AVSK + IR + G F EN LQEA
Sbjct: 3 TLADNLSAISARIASAAQAAGREPASVQLLAVSKTKPAAAIRELYAAGVCDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + FIG +QSNK I FD + +V R K A LS + L
Sbjct: 63 LTKQQALGDLPLI-WHFIGPIQSNKTKAIAEHFDWVHSVDRLKIAQRLSEQRPAGLAPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
+ +QVN E KSG + L + GLM IP + + F L
Sbjct: 122 ICLQVNVSGEDSKSGCAAAELPALAKAVAALPNLRLRGLMAIPEPTDDRAAQEAAFASLR 181
Query: 179 EI--ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 NLLEQQHLGLDTLSMGMSHDLEAAIAQGATWVRIGTALFGAR 223
>gi|330984657|gb|EGH82760.1| hypothetical protein PLA107_06501 [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 228
Score = 277 bits (709), Expect = 9e-73, Method: Composition-based stats.
Identities = 79/224 (35%), Positives = 107/224 (47%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAANREPASVGLLAVSKTKPAGDLREAYTAGLRNFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L + FIG +QSNK I F + +V R K A LS + + L
Sbjct: 63 LGKQLELSDLP-LCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEALEPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
+ IQVN E KSG P +L + GLM IP NP F +
Sbjct: 122 ICIQVNVSGEASKSGCSPQDLPALAAAIIALPRLKLRGLMAIPEPTDNPAAQHASFAAVR 181
Query: 179 EIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 TLQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDY 225
>gi|91203601|emb|CAJ71254.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 243
Score = 277 bits (709), Expect = 9e-73, Method: Composition-based stats.
Identities = 82/231 (35%), Positives = 122/231 (52%), Gaps = 12/231 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ KQ I N+AI A + + ++LV +K VD +IR A+ G I ENK+QE
Sbjct: 1 MSIKENLENVKQNIANAAIKAGKKPEDITLVMATKTVDVDRIREAIKAGGNIIGENKIQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A KK+ L+ E V+ FIG LQ+NKV + + +I +V R A L ++++ R L
Sbjct: 61 ALKKYQELKDEK-VEWHFIGHLQTNKVKDALKFAHMIHSVDRLPLAEKLDHRLMQEVRSL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+ +QVNT +E K GI P + + + LN+ GLM I + + F +L
Sbjct: 120 DILVQVNTSHEESKYGIEPEKAISLIKQIAKYDTLNIRGLMTIGLFTKDEVKIRKCFKVL 179
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ ++ LSMGMT D+++AI GA VRIG+ IFG R
Sbjct: 180 KALCDIIATEGIDRVQMDYLSMGMTNDYQIAIEEGANMVRIGTAIFGARNT 230
>gi|241758478|ref|ZP_04756598.1| pyridoxal phosphate enzyme, YggS family [Neisseria flavescens
SK114]
gi|241321381|gb|EER57522.1| pyridoxal phosphate enzyme, YggS family [Neisseria flavescens
SK114]
Length = 231
Score = 276 bits (708), Expect = 1e-72, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 108/227 (47%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L Q + +E +A A RP D+V LVAVSK + IR GQ F EN +Q
Sbjct: 1 MSVLQQNYQDVCRAVEQAAEAAGRPADAVKLVAVSKTFPADDIREVYVAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E +K L D+ IG +QSNK + + T+ R KTA LS + +
Sbjct: 61 EWFEKTETLADLPDIVWHVIGDVQSNKTKFVAERAHWVHTIDRLKTARRLSEQRSSEMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYL 176
L V I+VN E K G+ P + + Q + V GLMC+ + + F+
Sbjct: 121 LQVCIEVNIAAEEAKHGVAPAEAVALALEVAQLPNIKVRGLMCVAKADSSDDELRSQFHT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + E + LSMGM+ D +A+ GAT VRIGS IFG+R
Sbjct: 181 MQRLLAELNAAGVEADVLSMGMSGDMPIAVECGATHVRIGSAIFGKR 227
>gi|146279161|ref|YP_001169320.1| alanine racemase domain-containing protein [Rhodobacter sphaeroides
ATCC 17025]
gi|145557402|gb|ABP72015.1| alanine racemase domain protein [Rhodobacter sphaeroides ATCC
17025]
Length = 220
Score = 276 bits (708), Expect = 1e-72, Method: Composition-based stats.
Identities = 90/215 (41%), Positives = 119/215 (55%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ +I + A R SV L+AVSK+ ++ L G IF EN +QEA+ KW
Sbjct: 2 LETILNRIAEAEKAAGRAPGSVELIAVSKVQPLDRVVAVLEAGHRIFGENYVQEAQGKWP 61
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR + + + IG LQ+NK V LFD I T+ R A L+ ++ +++Q
Sbjct: 62 ELRARFGRLSIHMIGPLQTNKAKAAVGLFDAIHTLDRPSLADKLARLAQERGASPELFVQ 121
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P F+ CR L V GLMCIPP + PHF L+ IA
Sbjct: 122 VNTGEEPQKAGVLPADADGFIATCRSMD-LPVRGLMCIPPEGEDSAPHFAQLAAIADRNG 180
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L LSMGM+ DFE AIA+GAT VR+GS IFG R
Sbjct: 181 LGGLSMGMSGDFEAAIAAGATHVRVGSAIFGARDY 215
>gi|227326779|ref|ZP_03830803.1| putative alanine racemase [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 270
Score = 276 bits (708), Expect = 1e-72, Method: Composition-based stats.
Identities = 71/225 (31%), Positives = 105/225 (46%), Gaps = 11/225 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + +I + R +V L+ VSK ++R+A + G I ENK+QEA +KW
Sbjct: 29 NLAAVQMRIAAACHRVGRDPATVRLLPVSKTKPESRLRMAHTAGCRILGENKVQEAYRKW 88
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++ D+Q IG LQ+NK + + + + A L + + R L V++Q
Sbjct: 89 EAMQDLADLQWSVIGHLQTNKAKLVARFATEFQALDSLRLAEALDRRLHVEGRSLDVFVQ 148
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
VNT E K G+ P F+ L V GLM + + F L +
Sbjct: 149 VNTSGEASKYGLSPEDVPAFIQALPAFPTLRVRGLMTLALFSSEAERVRQCFIRLRNLRD 208
Query: 183 ECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + L +LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 209 KLQQNAPVGIGLDELSMGMSGDFEIAIEEGATVVRVGQAIFGARP 253
>gi|148560723|ref|YP_001259647.1| hypothetical protein BOV_1741 [Brucella ovis ATCC 25840]
gi|148371980|gb|ABQ61959.1| conserved hypothetical protein TIGR00044 [Brucella ovis ATCC 25840]
Length = 226
Score = 276 bits (708), Expect = 1e-72, Method: Composition-based stats.
Identities = 114/224 (50%), Positives = 149/224 (66%), Gaps = 2/224 (0%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K I + A+R SV+LVAVSK D++ IR AL GQ +F EN++Q
Sbjct: 1 MSDVVANLNAVKAVIARAEKEARRENGSVTLVAVSKTFDAQAIRPALDAGQRVFGENRVQ 60
Query: 60 EAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA+ KW LR+ W ++L IG LQSNK ++ V+LFDVIETV REK A+ L+ E+ KQ +
Sbjct: 61 EAQGKWPALREAWASIELHLIGPLQSNKAADAVALFDVIETVDREKIAAALASEIRKQGK 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+Y+QVNTG E QK+GI + FV CR+++ L +EGLMCIPPA NP PHF LL
Sbjct: 121 SPKLYVQVNTGLEPQKAGIPLQEAVAFVERCRKEHGLVIEGLMCIPPAGENPGPHFALLE 180
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ARE + KLSMGM+ D+E AI GATSVR+G+ IFG R
Sbjct: 181 KLAREAHVEKLSMGMSGDYETAIGFGATSVRVGAAIFGGRAYSA 224
>gi|323704172|ref|ZP_08115751.1| alanine racemase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323536238|gb|EGB26010.1| alanine racemase domain protein [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 233
Score = 276 bits (708), Expect = 1e-72, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 12/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + K+ ++ A+ R D + +VAV+K VD +I A+ G ENK+QE
Sbjct: 1 MDIRYNIDKVKENVKKHALKVNRNPDDILIVAVTKTVDVSRIEEAIKYGITDIGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L + VQ FIG LQ+NKV ++ +I ++ + A + K +R +
Sbjct: 61 LVDKYPTLMDK--VQFHFIGHLQTNKVKYVIDKVKMIHSLDSVRLAEEIDKRAKKCNRIM 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG--NPKPHFYLLS 178
I+VN G E K GI P+ +F+ L ++GLM + P + + +P+F +
Sbjct: 119 DCLIEVNVGSEESKYGIEPSSLLEFIKELESFDNLKIKGLMTVAPYVDAEDVRPYFRKMK 178
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + LSMGMT D+ +A+ GA +RIG+GIFG+R
Sbjct: 179 ELFDNTKSLNQKNLDFKYLSMGMTNDYTVAVEEGANIIRIGTGIFGKR 226
>gi|239623979|ref|ZP_04667010.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522010|gb|EEQ61876.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 226
Score = 276 bits (708), Expect = 1e-72, Method: Composition-based stats.
Identities = 72/227 (31%), Positives = 116/227 (51%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L ++IE + I + R +V+L+AVSK + A + G F ENK+QE
Sbjct: 2 IKEHLIEVNRRIEQACIRSGRDPKAVTLIAVSKTKPVPMLEEAYAAGARDFGENKVQEIV 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + D++ IG LQ NKVS+++ +I +V + A + + K + +
Sbjct: 62 AKKPELPE--DIRWHMIGHLQRNKVSQVLGKAVLIHSVDSLRLAQQIETDAAKAGLDVDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSE 179
++VN E K G M + +D ++ + ++++GLM I P + NP+ + F L E
Sbjct: 120 LLEVNVAREESKYGFMLEEVEDAIMTIKDFPHVHIKGLMTIAPFVENPEENRGIFKKLFE 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A + LSMGMT D+E+A+ GAT VR+G+GIFG R
Sbjct: 180 FAVDIDKKNIDNVTMDVLSMGMTGDYEVAVEEGATMVRVGTGIFGVR 226
>gi|219872205|ref|YP_002476580.1| succinyl-diaminopimelate desuccinylase with a TIM-barrel fold
[Haemophilus parasuis SH0165]
gi|219692409|gb|ACL33632.1| succinyl-diaminopimelate desuccinylase with a TIM-barrel fold
[Haemophilus parasuis SH0165]
Length = 227
Score = 276 bits (708), Expect = 1e-72, Method: Composition-based stats.
Identities = 78/226 (34%), Positives = 110/226 (48%), Gaps = 8/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L Q+I+ A RP+ SV L+AVSK I A+ GQ F EN +QE
Sbjct: 1 MSISQNLATISQQIQQYCQQANRPEQSVKLLAVSKTKPISAIAEAIEAGQRAFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + ++ FIG LQSNK + FD ++T+ R K A LS + + L
Sbjct: 61 GIEKIQHFAENDTLEWHFIGLLQSNKTRVVAEHFDWVQTIDRLKIAQRLSEQRPEHLPVL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQ+N E KSGI + + Q +L + GLM IP P+ +
Sbjct: 121 NVLIQINISDEASKSGISAKEMLELATQISQLPRLKLRGLMAIPKPESEPEQQKIALAQM 180
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E+ + + + LSMGM+ D AI G+T VRIG+ IFG R
Sbjct: 181 NELFLQLQSQFEGIDTLSMGMSDDMPSAIECGSTMVRIGTAIFGAR 226
>gi|260466803|ref|ZP_05812988.1| alanine racemase domain protein [Mesorhizobium opportunistum
WSM2075]
gi|259029415|gb|EEW30706.1| alanine racemase domain protein [Mesorhizobium opportunistum
WSM2075]
Length = 220
Score = 276 bits (708), Expect = 1e-72, Method: Composition-based stats.
Identities = 109/211 (51%), Positives = 140/211 (66%), Gaps = 1/211 (0%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
K KI + A R +V+LVAVSK ++ I + GQ +F EN++QEA+ KW PL
Sbjct: 10 AVKAKIAAAEREAGREAGAVTLVAVSKTFEAADIGPVIEAGQRVFGENRVQEAQGKWPPL 69
Query: 69 R-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
+ D++L IG LQSNK E V+LFDVIETV REK A+ L+ E+ +Q R +Y+QVN
Sbjct: 70 KGAFPDIELHLIGPLQSNKAREAVALFDVIETVDREKIAAELAREIARQGRAPKLYVQVN 129
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLT 187
TG E QK+GI P + FV CR + L +EGLMCIPPA NP PHF LL ++ +E +
Sbjct: 130 TGSEPQKAGIEPREAVAFVARCRDVHGLAIEGLMCIPPADENPGPHFALLEKLGKEAGVA 189
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 190 KLSMGMSGDYETAIAFGATSVRVGSAIFGSR 220
>gi|331091121|ref|ZP_08339963.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405343|gb|EGG84879.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
2_1_46FAA]
Length = 224
Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats.
Identities = 67/229 (29%), Positives = 108/229 (47%), Gaps = 19/229 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + I S + V+L+AVSK ++ I+ G F ENK+QE
Sbjct: 2 LKDNLNHVIENIHKSCK------NEVTLIAVSKTKPAEMIQELYDAGCRNFGENKVQELI 55
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L K D+ IG LQ NKV IV +I +V + A + E K++ + +
Sbjct: 56 DKYEILPK--DICWHMIGHLQRNKVKYIVDKVSLIHSVDSLRLAQTIEKEAEKKNCVVDI 113
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
I++N E K GI P + + + + V+GLM + P + NP+ + + +E+
Sbjct: 114 LIEINMAREESKYGIYPEELEALLREISHLSHIRVKGLMTVAPNVKNPEENRKIFTEMKK 173
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ LSMGM+ D+ +A+ GA VR+G+ IFG R
Sbjct: 174 LSVDIAKKNIDNIIMSILSMGMSNDYNIAVEEGANMVRVGTSIFGARNY 222
>gi|187478097|ref|YP_786121.1| hypothetical protein BAV1600 [Bordetella avium 197N]
gi|115422683|emb|CAJ49210.1| conserved hypothetical protein [Bordetella avium 197N]
Length = 275
Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats.
Identities = 69/228 (30%), Positives = 103/228 (45%), Gaps = 11/228 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ L + +I+ + R V L+ VSK +R+A + G +F ENK+QEA
Sbjct: 30 RHNLAAVQARIDAACARVGRKPSEVRLLPVSKTKPEASLRLAYAAGCRMFGENKVQEAYG 89
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
KW ++ D+ IG LQ+NK + + + + A L + + R L V+
Sbjct: 90 KWEGMQDLPDLGWSVIGHLQTNKAKLVARFAAEFQALDSLRLAEALERRLQAEGRALDVF 149
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI 180
+QVNT E K G+ P + F+ L V GLM + + F L +
Sbjct: 150 VQVNTSGEPSKYGLAPAEVAGFLRQLSAFSALRVRGLMTLALFSAEGERVRQCFMQLRAL 209
Query: 181 ARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ L +LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 210 RERLRQQAPGAVSLDELSMGMSGDFEIAIEEGATVVRVGQAIFGARAT 257
>gi|220921031|ref|YP_002496332.1| alanine racemase domain-containing protein [Methylobacterium
nodulans ORS 2060]
gi|219945637|gb|ACL56029.1| alanine racemase domain protein [Methylobacterium nodulans ORS
2060]
Length = 227
Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats.
Identities = 99/210 (47%), Positives = 128/210 (60%), Gaps = 1/210 (0%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE- 71
+I +A+ +R S++L+AVSK V + I AL GQ +F EN +QEAK KW LR+
Sbjct: 17 EIARAALDHERDPASIALIAVSKTVPGEGILPALEAGQRLFGENYVQEAKAKWPLLRERY 76
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
DV+L IG LQSNK E V LFDVI ++ R A+ L+ EM + R + +QVNTG E
Sbjct: 77 PDVELHMIGPLQSNKAREAVELFDVIHSLDRPSLAAALAKEMQRTGRRPRLLVQVNTGDE 136
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSM 191
QK G+ P + F+ CR + L + GLMCIPPA P PHF LL+ IA L LSM
Sbjct: 137 PQKGGVSPAEVDAFLAACRDTHGLTIAGLMCIPPAADPPSPHFALLARIAARHGLGLLSM 196
Query: 192 GMTRDFELAIASGATSVRIGSGIFGERPCQ 221
GM+ DF AI GAT VR+G+ IFG R +
Sbjct: 197 GMSSDFAAAIQMGATHVRVGTAIFGARASK 226
>gi|299533817|ref|ZP_07047188.1| hypothetical protein CTS44_23491 [Comamonas testosteroni S44]
gi|298718233|gb|EFI59219.1| hypothetical protein CTS44_23491 [Comamonas testosteroni S44]
Length = 274
Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats.
Identities = 74/225 (32%), Positives = 106/225 (47%), Gaps = 11/225 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +++I + A R SV L+ VSK +R+A + G + ENK+QEA KW
Sbjct: 29 NLATVQERIAAACQRAGRDPASVRLLPVSKTKPQASLRLAYAAGCRLLGENKVQEAFGKW 88
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++ D++ IG LQ+NK + + + + A L + Q R L V++Q
Sbjct: 89 ESMQDLADLRWSVIGHLQTNKARLVARFASEFQALDSLRVAEALDRHLQGQGRSLDVFVQ 148
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
VNT E K G+ P F+ L V GLM + + F LL E+
Sbjct: 149 VNTSGEASKYGLNPEDVPGFIQQLPVFSALRVRGLMTLALFSAEAERVRRCFILLRELRD 208
Query: 183 ECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + L LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 209 QLQQSAPAGMELDALSMGMSGDFEIAIEEGATVVRVGQAIFGARP 253
>gi|82703845|ref|YP_413411.1| hypothetical protein Nmul_A2732 [Nitrosospira multiformis ATCC
25196]
gi|82411910|gb|ABB76019.1| Protein of unknown function UPF0001 [Nitrosospira multiformis ATCC
25196]
Length = 244
Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 113/227 (49%), Gaps = 9/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L+ + I A A R ++L+A SK ++++R A GQ +F EN LQEA
Sbjct: 7 TVAAGLKKVRAHITEIAGKAGRQAGEITLLAASKTNPAERLREAFVAGQTVFGENYLQEA 66
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L K+ ++ FIG +QSNK I F + +V R+K A LS + + L
Sbjct: 67 LVKIDAL-KDLPIEWHFIGPIQSNKTRRIAENFAWVHSVDRKKIAERLSKDRPEALPPLQ 125
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLS 178
+ +QVN E KSG+ P + D + +L + G+M IP + F +L
Sbjct: 126 ICLQVNVSGEDSKSGVAPEEVADLAAHVAELPRLRLRGVMAIPELTKFTALQRSQFRMLK 185
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E + K + +SMGM+ D ELAI GAT VRIG+ IFG R
Sbjct: 186 EAYDQLKQSGYDVDTISMGMSEDLELAIQEGATMVRIGTAIFGPRRY 232
>gi|148359586|ref|YP_001250793.1| pyridoxal-5'-phosphate dependent enzyme family transporter protein
[Legionella pneumophila str. Corby]
gi|148281359|gb|ABQ55447.1| pyridoxal-5'-phosphate dependent enzyme family [Legionella
pneumophila str. Corby]
Length = 231
Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats.
Identities = 81/227 (35%), Positives = 118/227 (51%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++ + + + + R +SV L+AVSK + IR A G F EN QE
Sbjct: 1 MSISQNIKKVRELLTQTELSSNRQPNSVLLLAVSKEQSPELIREAFEQGIRHFGENYFQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++K + L K+ + FIG +QSNK I F+ + ++ R KTA LL+ +Q L
Sbjct: 61 AQEKILAL-KDLPICWHFIGPIQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V +Q+N E KSGI P D + +Q L + GLM IPP N + F L
Sbjct: 120 NVCLQINLAGETTKSGIPPEHAIDLALEVKQLPNLQLRGLMTIPPQQNNMQTQYDLFLKL 179
Query: 178 SEIAR------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+++ K+ LSMGM+ D AI +G+T VRIG IFGER
Sbjct: 180 NQLKESINKTLHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGER 226
>gi|123443627|ref|YP_001007599.1| hypothetical protein YE3433 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122090588|emb|CAL13457.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 231
Score = 276 bits (707), Expect = 1e-72, Method: Composition-based stats.
Identities = 76/230 (33%), Positives = 107/230 (46%), Gaps = 12/230 (5%)
Query: 1 MSLGN-KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS+ LQ + KI +A R + V+L+AVSK I A++ GQ F EN +Q
Sbjct: 1 MSIIEQNLQDVRAKIAAAARNCGRSPEEVTLLAVSKTKPVSAIEEAIAAGQYAFGENYVQ 60
Query: 60 EAKKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
E K + ++ FIG LQSNK + F TV R K A LS + +
Sbjct: 61 EGVDKIHYFAESAHASQLEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIAQRLSAQRPPE 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L + IQVN E KSGI + + L++ GLM IP + + +
Sbjct: 121 MPALNILIQVNISDEQSKSGIALAELPALAASISELPHLHLRGLMAIPAPETDYQRQLAV 180
Query: 177 LSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + ++ LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 181 FEQMNQAFLTLKTSYPQMDTLSMGMTDDMAAAIAAGSTLVRIGTAIFGSR 230
>gi|30248969|ref|NP_841039.1| hypothetical protein NE0966 [Nitrosomonas europaea ATCC 19718]
gi|30138586|emb|CAD84877.1| Uncharacterized pyridoxal-5'-phosphate dependent enzyme family
UPF0001 [Nitrosomonas europaea ATCC 19718]
Length = 238
Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats.
Identities = 80/227 (35%), Positives = 115/227 (50%), Gaps = 9/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++LQ K +I +A A R +SV L+A SK K+R A GQ +F EN LQE
Sbjct: 3 TIASRLQNVKNRIIEAAKKAGRDPESVQLLAASKTNTPDKLREAWEAGQTVFGENYLQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L ++ FIG +QSNK I F + + REK A+ LS + L
Sbjct: 63 LVKIRALSDLP-IEWHFIGPIQSNKTKLIAENFSWVHGIDREKIATRLSAARPESLPPLQ 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V +QVN EI KSG+ P + + ++ +L + G+M +P + F ++
Sbjct: 122 VCVQVNVSGEITKSGVDPEKAAELAAFVSEQPRLQLRGIMAVPELTAVTALQREQFQMMR 181
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ + + L LSMGM+ D E AIA GAT VRIG+ IFG R
Sbjct: 182 EVYEQLQQQGFNLDTLSMGMSEDLENAIAEGATMVRIGTAIFGPRRY 228
>gi|153011453|ref|YP_001372667.1| alanine racemase domain-containing protein [Ochrobactrum anthropi
ATCC 49188]
gi|151563341|gb|ABS16838.1| alanine racemase domain protein [Ochrobactrum anthropi ATCC 49188]
Length = 276
Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats.
Identities = 72/227 (31%), Positives = 112/227 (49%), Gaps = 9/227 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ L+ + +I + + R + V L+ ++K V ++ +R A + G + F ENKLQEA+
Sbjct: 31 ASNLKEVRARIAAACHRSGRDPNDVRLLPITKTVPARILRHAYAAGILDFGENKLQEARD 90
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K L + ++ +G LQ+NKV +V L + + A L+ + + R L VY
Sbjct: 91 KQAAL-NDLPIRWSIVGHLQTNKVKYLVRLAWEFHALDSFRLAEELNRRLDAEDRDLDVY 149
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVNT E K G+ P+ FV + +L GLM + + + F LL +
Sbjct: 150 VQVNTSDEESKYGLHPDDLMSFVARLSEFPRLKPRGLMTLAIFSSDTARVRACFRLLRGL 209
Query: 181 AREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 210 RDRVVDVHPHMNGLSMGMSGDFEVAIEEGATVVRVGQAIFGPRPTSN 256
>gi|330977068|gb|EGH77028.1| hypothetical protein PSYAP_10145 [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 236
Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats.
Identities = 76/218 (34%), Positives = 106/218 (48%), Gaps = 6/218 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A+R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAAERDPASVGLLAVSKTKPASDLREAYTAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L + FIG +QSNK I FD + +V R K A LS + + L
Sbjct: 63 LGKQLELSDLP-LCWHFIGPIQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
+ IQVN E KSG P +L + GLM IP +P F +
Sbjct: 122 ICIQVNVSGEASKSGCTPQDLSALAAAIIALPRLRLRGLMAIPVPTDDPAAQDASFAAVR 181
Query: 179 EIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ + L LSMGM+ D E AIA GAT VRIG+ +
Sbjct: 182 TLQEQLNLPLDTLSMGMSHDLEAAIAQGATWVRIGTAL 219
>gi|257095145|ref|YP_003168786.1| alanine racemase domain-containing protein [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257047669|gb|ACV36857.1| alanine racemase domain protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 229
Score = 276 bits (707), Expect = 2e-72, Method: Composition-based stats.
Identities = 77/225 (34%), Positives = 113/225 (50%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L KLQ +I +A R V L+AVSK ++ +R A + GQ F E+ LQE
Sbjct: 3 TLPAKLQAVLARIACAARRWGRDPADVLLLAVSKTWPAECLREAAAAGQRAFGESYLQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K LR ++ FIG+LQ+NK + FD + ++ R + A LS + L
Sbjct: 63 IDKVAELRAM-GLEWHFIGTLQANKTRPVAETFDWVHSLDRLRVAERLSAQRPLSLPSLS 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
V +QVN E K G+ P + + +L + GLM IP + + F L
Sbjct: 122 VCLQVNVSGEASKGGVSPAEAPALAHAVARLPKLRLRGLMAIPAPSDDFVEQRRPFRRLR 181
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E++ + + L LSMGM++D E AIA G+T VR+G+ IFGER
Sbjct: 182 ELSEQLRADGLVLDTLSMGMSQDLEAAIAEGSTLVRVGTAIFGER 226
>gi|70733123|ref|YP_262896.1| hypothetical protein PFL_5838 [Pseudomonas fluorescens Pf-5]
gi|68347422|gb|AAY95028.1| conserved hypothetical protein TIGR00044 [Pseudomonas fluorescens
Pf-5]
Length = 232
Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats.
Identities = 77/229 (33%), Positives = 105/229 (45%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + + ++I N+ +R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIADNIAQVAERIRNACQAVQRDPHSVQLLAVSKTKPAAALREAHAAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + FIG +QSNK I FD + +V R K A LS + + L
Sbjct: 63 LGKQQELADLP-LSWHFIGPIQSNKTRAIAEHFDWVHSVDRLKIAQRLSEQRPAELPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF------- 174
+ IQVN E KSG P +L + GLM IP +
Sbjct: 122 ICIQVNVSGEASKSGCAPADLPALASAIGALPRLQLRGLMAIPEPTEDRAAQDAAFAAVQ 181
Query: 175 YLLSEIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L +++ K L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 RLNNDLRDSLKLPLDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDYS 230
>gi|239503167|ref|ZP_04662477.1| TIM-barrel fold family protein [Acinetobacter baumannii AB900]
Length = 230
Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats.
Identities = 75/225 (33%), Positives = 110/225 (48%), Gaps = 7/225 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q Q+I+ + LA+R ++V L+AVSK S+++R + GQ F EN LQEA
Sbjct: 4 LQDARQHVLQQIKTACELAQRAPETVQLLAVSKTHPSERLREMYAAGQRAFGENYLQEAL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ D++ FIG +Q NK + FD + V R A LS + L +
Sbjct: 64 DKIDALQD-LDIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQRGDDQAALNI 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM-----GNPKPHFYLL 177
+QVN + K G P + V Q ++ + GLM IP + K F +
Sbjct: 123 CLQVNIDGQDSKDGCAPEDVAELVAQMSQLPKIKLRGLMVIPAPDNTGAFADAKKLFDAV 182
Query: 178 S-EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ A LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 183 KVQHAHPEDWDTLSMGMSGDLEAAIAAGSTMVRVGTALFGARDYS 227
>gi|332974663|gb|EGK11580.1| YggS family pyridoxal phosphate enzyme [Kingella kingae ATCC 23330]
Length = 230
Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats.
Identities = 74/228 (32%), Positives = 111/228 (48%), Gaps = 8/228 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N +Q++ +A+ A+R S+ L+AVSK + I + GQ F EN +QE
Sbjct: 1 MNLANNYAATQQRLVQAALAAQRDPSSLQLIAVSKTFPTDDIHAVYALGQRDFGENYIQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L D+ IG++QSNK + + T+ K A LS + Q L
Sbjct: 61 WWQKTEQLADCGDLVWHIIGNVQSNKSRLVAERAHWLHTLDSVKLARRLSTQRPAQLPDL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLL 177
V I++N EI K GI P Q D +L + GLMC+ A + F +
Sbjct: 121 QVCIEINIANEINKHGIAPEQMLDLAHEVMALPKLKLRGLMCVAQANVGDDVLQQQFGRM 180
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+++ ++ + LSMGM+ D E A+A GAT VR+G+ IFG R
Sbjct: 181 NDLLQQLRQIAPDADTLSMGMSGDLECAVACGATMVRVGTAIFGGRSY 228
>gi|194334464|ref|YP_002016324.1| alanine racemase domain-containing protein [Prosthecochloris
aestuarii DSM 271]
gi|194312282|gb|ACF46677.1| alanine racemase domain protein [Prosthecochloris aestuarii DSM
271]
Length = 229
Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats.
Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L +++I S + A R + V L+AVSK + IR A GQ+ E+ +QE
Sbjct: 3 TISENLAAIQKEILTSCLKAGRSPEDVRLIAVSKTKPASLIREAYDAGQIDIGESYVQEF 62
Query: 62 KKK-WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K P + V+ FIG LQSNK+ IV ++ ++ + TA LS ++ +
Sbjct: 63 LEKTASPELEGLPVRWHFIGHLQSNKIKYIVDKVYMVHSIDKLSTARELSKRAAAKNLTV 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE 179
I+VNT E K G+ P + + + GLM I P F LL+
Sbjct: 123 DYLIEVNTSGEPSKFGLSPEELLKTAGSFFDLPSVTLRGLMTIASPDPSLAHEEFKLLAN 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + +T+LSMGM+ DFE AI +GAT VRIG+ +FG R
Sbjct: 183 LLEQLRAKAPHPENITELSMGMSGDFEKAIDAGATMVRIGTALFGRR 229
>gi|294649640|ref|ZP_06727054.1| alanine racemase domain protein [Acinetobacter haemolyticus ATCC
19194]
gi|292824456|gb|EFF83245.1| alanine racemase domain protein [Acinetobacter haemolyticus ATCC
19194]
Length = 228
Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats.
Identities = 76/228 (33%), Positives = 113/228 (49%), Gaps = 8/228 (3%)
Query: 1 MSL-GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+L + Q +IE + +R SV L+AVSK S+ +R GQ F EN LQ
Sbjct: 1 MNLLQQQRQHVLMQIEQACQHVQRDPKSVQLLAVSKTHPSQSLRELYLAGQRSFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L+ +++ FIG +Q NK + FD + V R A LS + ++ +
Sbjct: 61 EALGKIEELQD-LEIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQRLETQKP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM-----GNPKPHF 174
L + IQVN + K G PN+ + V Q L + GLM IP + K F
Sbjct: 120 LNICIQVNIDGQDSKDGCQPNEVSELVEQISQLPNLRLRGLMVIPAPDNVAAFADAKTLF 179
Query: 175 YLLSEI-ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + A++ LSMGM+ D + AIA+G+T VR+G+ +FG+R
Sbjct: 180 DQVKSLHAQQQDWDTLSMGMSADLDAAIAAGSTMVRVGTALFGKRDYS 227
>gi|90421806|ref|YP_530176.1| hypothetical protein RPC_0282 [Rhodopseudomonas palustris BisB18]
gi|90103820|gb|ABD85857.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
BisB18]
Length = 219
Score = 276 bits (706), Expect = 2e-72, Method: Composition-based stats.
Identities = 99/219 (45%), Positives = 131/219 (59%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS L +++I + A R + +V+L+AVSK ++ I L GQ +F EN++QE
Sbjct: 1 MSEAAGLAEVERQIARACADAGRERAAVTLIAVSKTFEADGITPVLEAGQRVFGENRVQE 60
Query: 61 AKKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
AK KW L V L IG LQSNK E V+LFD I +V R L+ E+ Q R
Sbjct: 61 AKGKWPALTAAYPGVALHLIGPLQSNKAKEAVALFDAIHSVDRPSLCQALAKEIAAQGRA 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ +++Q+NTG E QK+G++P + F+ CR Y LNV GLMCIPP P PHF L ++
Sbjct: 121 VELFVQLNTGEEPQKAGVVPAEADAFIKACRDTYGLNVSGLMCIPPVDQAPAPHFALTAK 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IA L KLSMGM+ DF +AI GAT VR+GS IFG R
Sbjct: 181 IAARNGLQKLSMGMSADFAVAIQFGATHVRVGSAIFGHR 219
>gi|328541708|ref|YP_004301817.1| Alanine racemase domain protein [polymorphum gilvum SL003B-26A1]
gi|326411460|gb|ADZ68523.1| Alanine racemase domain protein [Polymorphum gilvum SL003B-26A1]
Length = 266
Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats.
Identities = 105/217 (48%), Positives = 135/217 (62%), Gaps = 1/217 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++L +I + R SV+++AVSK ++IR L+ GQ +F EN++QEA K
Sbjct: 49 DRLTCVTAEIRAAEAEYGRAAGSVTVIAVSKTFSGEEIRPVLAAGQRVFGENRVQEAMAK 108
Query: 65 WIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W LR + ++L IG LQSNK E V++FDVI TV REK A L EM +Q R LP +
Sbjct: 109 WPGLRADFPGIELHLIGPLQSNKAKEAVAIFDVIHTVDREKIARALKSEMDRQGRHLPCF 168
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVNTG E QK+GI P QT FV CR + L+V GLMCIPP P PHF LL +IA
Sbjct: 169 VQVNTGEEAQKAGIAPAQTDAFVAFCRDEVGLDVAGLMCIPPVEEAPGPHFALLQKIAAR 228
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L +LSMGM+ DF +A+ GAT VR+GS IFG R
Sbjct: 229 NGLAQLSMGMSSDFPIAVGFGATHVRVGSAIFGSRDY 265
>gi|75674288|ref|YP_316709.1| hypothetical protein Nwi_0089 [Nitrobacter winogradskyi Nb-255]
gi|74419158|gb|ABA03357.1| Protein of unknown function UPF0001 [Nitrobacter winogradskyi
Nb-255]
Length = 224
Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats.
Identities = 93/213 (43%), Positives = 133/213 (62%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +I + A+R + +V+LVAVSK D+ I ++ GQ +F EN++QEA++KW
Sbjct: 12 LASVEAEIVRACRDARRERSTVTLVAVSKTFDADAITPVIAAGQRVFGENRVQEAQRKWP 71
Query: 67 PL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L + L IG LQSNK E V+LFD I +V R L+ E+ +Q+R +++Q
Sbjct: 72 ELIAAHPGLALHLIGPLQSNKAKEAVALFDAIHSVDRVSLCEALAKEIDRQNRRPSLFVQ 131
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
+NTG E QK+G+ P+ DF+ CR + L + GLMCIPP P PHF L ++IAR
Sbjct: 132 INTGEEPQKAGVSPSNADDFIARCRDTHGLTISGLMCIPPMDDAPAPHFALTAKIARRNG 191
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +LSMGM+ DF +AIA GAT +R+GS IFG R
Sbjct: 192 IKQLSMGMSADFAIAIALGATHIRVGSAIFGTR 224
>gi|167623106|ref|YP_001673400.1| alanine racemase domain-containing protein [Shewanella halifaxensis
HAW-EB4]
gi|167353128|gb|ABZ75741.1| alanine racemase domain protein [Shewanella halifaxensis HAW-EB4]
Length = 233
Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats.
Identities = 81/229 (35%), Positives = 119/229 (51%), Gaps = 9/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++L + + +I +A + R + + L+AVSK + +I A GQ F EN +QE
Sbjct: 3 TITDRLAIAQHRIAQAAQNSSRRAEDIQLLAVSKTKPNSQIIEAYHAGQRRFGENYVQEG 62
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L +E D++ FIG LQSNK + +LFD + TV REK A L+ + + L
Sbjct: 63 ESKVNALSQEFPDIEWHFIGPLQSNKSKVVATLFDWMHTVEREKIAQRLNEQRPESMPAL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-- 178
V IQVN E KSG+ + +L + GLM IP A + L+
Sbjct: 123 NVCIQVNISQEQSKSGVPACEVLALADKIALLPKLTLRGLMAIPSADVDELTAIQELAAL 182
Query: 179 -----EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+A+ + LS+GM+ D ELA+A G+T VRIGS IFGER
Sbjct: 183 QSLYNELAQRFDSVDTLSVGMSNDLELAVAHGSTMVRIGSAIFGERDYS 231
>gi|217976529|ref|YP_002360676.1| alanine racemase domain protein [Methylocella silvestris BL2]
gi|217501905|gb|ACK49314.1| alanine racemase domain protein [Methylocella silvestris BL2]
Length = 230
Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats.
Identities = 107/219 (48%), Positives = 141/219 (64%), Gaps = 1/219 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++L +++I +A A RP ++LV VSK + +I L+ G+ F EN++QEA
Sbjct: 10 SVLDRLAEVRKEIGRAAADAGRPPGDIALVCVSKTFSAAEIEPVLAAGERRFGENRVQEA 69
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++KW LR+ DV+L IG LQSNK E V LFDVIETV R+K A L+ E K +R
Sbjct: 70 QEKWPALRQAYPDVELHLIGPLQSNKAHEAVKLFDVIETVDRDKIAKALATEAAKAARRP 129
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
Y+QVNTG E QK+G++P + F+ CR +Y L + GLMCIPP PHF LL++I
Sbjct: 130 KFYVQVNTGAEPQKAGVLPGEADAFIARCRNEYGLEIAGLMCIPPVDDQASPHFALLNQI 189
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
A L +LSMGM+ DFELAI GAT VRIGS IFG RP
Sbjct: 190 AARNGLRELSMGMSGDFELAIQLGATHVRIGSAIFGGRP 228
>gi|296445413|ref|ZP_06887371.1| alanine racemase domain protein [Methylosinus trichosporium OB3b]
gi|296257174|gb|EFH04243.1| alanine racemase domain protein [Methylosinus trichosporium OB3b]
Length = 223
Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats.
Identities = 98/221 (44%), Positives = 133/221 (60%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++L+ + I A R ++LV VSK + + L G +F ENK+QE
Sbjct: 1 MTIVDRLKAAEHAIAERARDCGRDPAEITLVCVSKTFPGEAVIPLLEAGHRVFGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+ KW PLR+ + V+L IG LQSNK E V FDVIE+V R K A ++ E+ +Q R
Sbjct: 61 ARAKWGPLRERFPVELHLIGPLQSNKAREAVETFDVIESVDRPKIAEAIAAEIARQGRRP 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ +QVNTG E QK+G+ P + F+ CR+++ L + GLMC+PP PHF LL+ I
Sbjct: 121 RLLVQVNTGEEPQKAGVRPQEADAFIKQCREQFGLEIAGLMCVPPVDQQASPHFALLAAI 180
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
AR L LSMGM+ D+ELAI GAT VRIGS I GER
Sbjct: 181 ARRNGLKDLSMGMSADYELAIQLGATHVRIGSAIMGERDYS 221
>gi|296107628|ref|YP_003619329.1| pyridoxal-5'-phosphate dependent enzyme family [Legionella
pneumophila 2300/99 Alcoy]
gi|295649530|gb|ADG25377.1| pyridoxal-5'-phosphate dependent enzyme family [Legionella
pneumophila 2300/99 Alcoy]
Length = 231
Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats.
Identities = 80/227 (35%), Positives = 118/227 (51%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++ + + + + R +SV L+AVSK + IR A G F EN QE
Sbjct: 1 MSISQNIKKVRELLTQTELSSNRQPNSVLLLAVSKEQSPELIREAFEQGIRHFGENYFQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++K + L K+ + FIG +QSNK I F+ + ++ R KTA LL+ +Q L
Sbjct: 61 AQEKILAL-KDLPICWHFIGPIQSNKTKGIAKYFNWVHSIDRNKTAKLLNQFRSEQLPPL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V +Q+N E KSGI P D + +Q L + GLM IPP N + F L
Sbjct: 120 NVCLQINLAGETTKSGIPPEHAIDLALEVKQLPNLQLRGLMTIPPQQNNMQTQYDLFLKL 179
Query: 178 SEIAR------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+++ K+ LSMGM+ D AI +G+T VRIG IFG+R
Sbjct: 180 NQLKESINKTLHLKMDTLSMGMSDDLVPAIKAGSTIVRIGRAIFGKR 226
>gi|238754611|ref|ZP_04615965.1| alanine racemase [Yersinia ruckeri ATCC 29473]
gi|238707242|gb|EEP99605.1| alanine racemase [Yersinia ruckeri ATCC 29473]
Length = 237
Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats.
Identities = 71/229 (31%), Positives = 105/229 (45%), Gaps = 8/229 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + +I A +R + ++L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDVRDRIATIAKNCERSPEEITLLAVSKTKPVAAIEEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K +++ FIG LQSNK + F TV R K A+ LS + + L
Sbjct: 63 VDKIHYFAGNTELEWHFIGPLQSNKSRLVAENFAWCHTVDRLKIATRLSEQRPAEMPALN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ IQVN E KSGI + + L + GLM IP + + ++
Sbjct: 123 ILIQVNISDEQSKSGIKLAELPELAANIHDLPHLRLRGLMAIPAPESHFDRQLAVFQQMN 182
Query: 182 R--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ ++ LSMGMT D AI +G+T VRIG+ IFG R +
Sbjct: 183 QAFLALKKHYPQMDTLSMGMTDDMAAAIGAGSTLVRIGTAIFGARDYGS 231
>gi|238752323|ref|ZP_04613802.1| alanine racemase [Yersinia rohdei ATCC 43380]
gi|238709484|gb|EEQ01723.1| alanine racemase [Yersinia rohdei ATCC 43380]
Length = 231
Score = 275 bits (705), Expect = 3e-72, Method: Composition-based stats.
Identities = 74/228 (32%), Positives = 105/228 (46%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + +I +A R + V+L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIEKNLQDVRAQIATAARNCARSPEEVTLLAVSKTKPVTAIEEAIAAGQYAFGENYVQEG 62
Query: 62 KKKWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K +++ FIG LQSNK + F TV R K A LS +
Sbjct: 63 VDKIRYFTDNAPTSNLEWHFIGPLQSNKSKLVAENFAWCHTVDRLKIAQRLSAQRPSGMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVN E KSGI + + L++ GLM IP + + +
Sbjct: 123 ALNVLIQVNISDEQSKSGIALAELPALAASISELPNLHLRGLMAIPAPETDYQRQLAVFE 182
Query: 179 EIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + ++ LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 183 QMNQAFLTLKTSYPQMDTLSMGMTDDMAAAIAAGSTLVRIGTAIFGSR 230
>gi|260555789|ref|ZP_05828009.1| TIM-barrel fold family protein [Acinetobacter baumannii ATCC 19606]
gi|260410700|gb|EEX03998.1| TIM-barrel fold family protein [Acinetobacter baumannii ATCC 19606]
Length = 235
Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats.
Identities = 74/227 (32%), Positives = 107/227 (47%), Gaps = 11/227 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q Q+I + LA+R ++V L+AVSK S+++R + GQ F EN LQEA
Sbjct: 9 LQDARQHVLQQIRTACELAQRAPETVQLLAVSKTHPSERLREMYAAGQRAFGENYLQEAL 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ D++ FIG +Q NK + FD + V R A LS + L +
Sbjct: 69 DKIDALQD-LDIEWHFIGHVQRNKTKHLAEQFDWVHGVDRLIIAERLSNQRGDDQAALNI 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+QVN + K G P + V Q ++ + GLM IP F ++
Sbjct: 128 CLQVNIDGQESKDGCAPEDVAELVAQMSQLPKIRLRGLMVIPAPDNT--AAFADAKKLFD 185
Query: 183 ECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
K LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 186 AVKVQHAHPEDWDTLSMGMSGDLEAAIAAGSTMVRVGTALFGARDYS 232
>gi|261342368|ref|ZP_05970226.1| pyridoxal phosphate enzyme, YggS family [Enterobacter cancerogenus
ATCC 35316]
gi|288315003|gb|EFC53941.1| pyridoxal phosphate enzyme, YggS family [Enterobacter cancerogenus
ATCC 35316]
Length = 233
Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats.
Identities = 75/229 (32%), Positives = 110/229 (48%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + + A++ GQ F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCSRASEEITLLAVSKTKPASALAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K R + D+Q FIG LQSNK + FD T+ R K A+ L+ +
Sbjct: 63 VDKICHFRDQGQDDLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLKIAARLNDQRPADMAP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI ++ L + GLM IP + + F + +
Sbjct: 123 LNVLIQINISDENSKSGIALSELDALAAEVAALPHLTLRGLMAIPAPESSYERQFAVARQ 182
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFEALKARYTTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|316934046|ref|YP_004109028.1| alanine racemase domain-containing protein [Rhodopseudomonas
palustris DX-1]
gi|315601760|gb|ADU44295.1| alanine racemase domain protein [Rhodopseudomonas palustris DX-1]
Length = 259
Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats.
Identities = 74/224 (33%), Positives = 109/224 (48%), Gaps = 10/224 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L+ +++I + R D V L+ V+K V + +R+A + G F ENKLQEA+ K
Sbjct: 26 NLKSVRERIAAACQRCGRS-DDVRLLPVTKTVPANVLRLAYAAGISEFGENKLQEARDKR 84
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L ++ IG LQ+NKV +V + + A L+ + + R L V++Q
Sbjct: 85 AMLVDLP-IRWSIIGHLQTNKVKYLVRFASEFHALDSLRLAEELNRRLDAEGRDLDVFVQ 143
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
VNT E K G+ P+ F + +L GLM + + + F LL ++
Sbjct: 144 VNTSGEASKYGLAPDDLVPFARRLSEYPRLKPRGLMTLAIFSADTERVRQCFRLLRDLRD 203
Query: 183 -----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
LT+LSMGM+ DFE AI GAT VR+G IFG RP
Sbjct: 204 RATSVHPDLTQLSMGMSGDFEAAIEEGATVVRVGQAIFGARPTS 247
>gi|225076826|ref|ZP_03720025.1| hypothetical protein NEIFLAOT_01877 [Neisseria flavescens
NRL30031/H210]
gi|224951865|gb|EEG33074.1| hypothetical protein NEIFLAOT_01877 [Neisseria flavescens
NRL30031/H210]
Length = 245
Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats.
Identities = 75/230 (32%), Positives = 110/230 (47%), Gaps = 9/230 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L Q + ++ +A A RP ++V LVAVSK + IR + GQ F EN +Q
Sbjct: 9 MSVLQQNYQDVNRAVKQAAEAAGRPANAVKLVAVSKTFPADDIREVYAAGQRDFGENYIQ 68
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E +K L D+ IG +QSNK + + T+ R KTA LS + +
Sbjct: 69 EWFEKTETLADLPDIVWHVIGDVQSNKTKFVAERAHWVHTIGRLKTARRLSEQRPSEMPP 128
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYL 176
L V I+VN E K G+ P++ + + + V GLMC+ + + F+
Sbjct: 129 LQVCIEVNIAAEEAKHGVAPDEAVALALEVAKLPNIKVRGLMCVAKADSSDDELRSQFHT 188
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + E + LSMGM+ D +A+ GAT VRIGS IFG R +
Sbjct: 189 MQRLLAELNAAGVEADVLSMGMSGDMPIAVECGATHVRIGSAIFGRREQK 238
>gi|253690200|ref|YP_003019390.1| alanine racemase domain protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756778|gb|ACT14854.1| alanine racemase domain protein [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 280
Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats.
Identities = 71/225 (31%), Positives = 106/225 (47%), Gaps = 11/225 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + +IE + R +V L+ VSK ++R+A G + ENK+QEA +KW
Sbjct: 29 NLAAVQARIEAACRRVDRDPATVRLLPVSKTKPESRLRMAHMAGCRVLGENKVQEAYRKW 88
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++ D+Q IG LQ+NK + + + + A L + + R L V++Q
Sbjct: 89 ESMQDLADLQWSVIGHLQTNKAKLVARFATEFQALDSLRLAEALDRRLQVEGRSLDVFVQ 148
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
VNT E K G+ P+ F+ L V GLM + + F L ++
Sbjct: 149 VNTSGEASKYGLSPDDVPAFIQALPTFSALRVRGLMTLALFSSEAERVRQCFVRLRQLRE 208
Query: 183 ECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ L +LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 209 RLQQNLPTGIDLDELSMGMSGDFEIAIEEGATVVRVGQAIFGARP 253
>gi|323691969|ref|ZP_08106218.1| YggS family Pyridoxal phosphate enzyme [Clostridium symbiosum
WAL-14673]
gi|323503978|gb|EGB19791.1| YggS family Pyridoxal phosphate enzyme [Clostridium symbiosum
WAL-14673]
Length = 234
Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats.
Identities = 66/227 (29%), Positives = 111/227 (48%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L K+ I ++ + R V+L+AVSK + +R A G F ENK+QE
Sbjct: 2 IRENLNDVKENIVSACRASNRQPQDVTLIAVSKTKPVELLREAYDAGIRDFGENKVQEIL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L D++ IG LQ NKV +++ +I +V A + E K++ + +
Sbjct: 62 EKAPALPD--DIRWHMIGHLQKNKVRQVIDKTVLIHSVDTVALAEQIEKEAAKKNIDVDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN G E K G + + V + + ++++GLM I P + N + + + ++ +
Sbjct: 120 LLEVNIGEEESKYGFRAGEVLEAVTIISKFSHVHIKGLMTIAPFVENSEENRDIFQKLYQ 179
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGMT D+ AI GAT +R+G+GIFG R
Sbjct: 180 LNVDIKSKNIDNVNMAVLSMGMTGDYMTAIEEGATMIRVGTGIFGAR 226
>gi|260599280|ref|YP_003211851.1| hypothetical protein CTU_34880 [Cronobacter turicensis z3032]
gi|260218457|emb|CBA33591.1| UPF0001 protein yggS [Cronobacter turicensis z3032]
Length = 247
Score = 275 bits (704), Expect = 3e-72, Method: Composition-based stats.
Identities = 78/225 (34%), Positives = 108/225 (48%), Gaps = 10/225 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +QKI +A R + V+L+AVSK + I A++ GQ F EN +QE +K
Sbjct: 17 NLTQVRQKISAAAQRCGRAPEEVTLLAVSKTKPASAIAEAIAAGQREFGENYVQEGVEKI 76
Query: 66 IPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
+ R + FIG LQSNK + FD TV R + A+ L+ + + L V
Sbjct: 77 LHFRDAGVEGLTWHFIGPLQSNKSRLVAEHFDWCHTVDRLRIATRLNEQRPDEMTPLNVL 136
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--- 180
IQVN E KSGI ++ +L + GLM IP F + E+
Sbjct: 137 IQVNISDEQSKSGIALSELDTLAEQIAALPRLRLRGLMAIPAPEKEYARQFAVAREMAAA 196
Query: 181 -----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 197 FTALKARYPTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 241
>gi|283797927|ref|ZP_06347080.1| pyridoxal phosphate enzyme, YggS family [Clostridium sp. M62/1]
gi|291074395|gb|EFE11759.1| pyridoxal phosphate enzyme, YggS family [Clostridium sp. M62/1]
Length = 234
Score = 275 bits (704), Expect = 4e-72, Method: Composition-based stats.
Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ +++I + + R + V+L++VSK + ++ A G F EN +QE
Sbjct: 2 IRENLEEVRERIRLACERSGRRVEDVTLISVSKTKPVEMLQEAYEAGSRDFGENHVQEIL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + + DV+ IG LQ NKV +++ +I +V A + E K+ + +
Sbjct: 62 EKHGQMPE--DVRWHMIGHLQKNKVRQVIDKVVLIHSVDTVGLAEQIEKEAAKKDLDIDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++VN E K G P + ++ V ++++GLM I P + N + + + ++
Sbjct: 120 LLEVNVAGEESKFGFCPEEVEEAVRKISLLPHVHIKGLMTIAPFVVNSEDNREVFKKLYN 179
Query: 182 ----------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGMT D+E+AI GAT +R+G+GIFG R
Sbjct: 180 LYVDIRGKNIDNVSMSVLSMGMTGDYEVAIEEGATMIRVGTGIFGAR 226
>gi|168010071|ref|XP_001757728.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691004|gb|EDQ77368.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 240
Score = 275 bits (704), Expect = 4e-72, Method: Composition-based stats.
Identities = 83/232 (35%), Positives = 109/232 (46%), Gaps = 16/232 (6%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ Q+I+ ++ A RP SV LVAVSK K IR G F EN +QE K
Sbjct: 11 QALRDVMQRIQQASERANRPVSSVRLVAVSKTKPVKMIREVYDAGHRHFGENYVQELIDK 70
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FL 120
+ D + FIG LQSNK + V ++E V EK A L + R L
Sbjct: 71 APQFPE--DTKWHFIGHLQSNKAKALVTGVPNLYMVEGVDSEKVADHLDKAVSGLGRPPL 128
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNPKPH-FYLLS 178
V +QVNT E KSG+ P+ + + L+ G M I P F L+
Sbjct: 129 KVLVQVNTSGEASKSGVEPSNCVELAKHIEEKCPNLHFSGFMTIGNLDYTSTPENFKTLA 188
Query: 179 ----EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ RE + +LSMGM+ DFELAI G+T+VR+GS IFG R T
Sbjct: 189 SCQEKTCRELGIPMEEFELSMGMSSDFELAIEMGSTNVRVGSTIFGAREYAT 240
>gi|149201521|ref|ZP_01878495.1| hypothetical protein RTM1035_03255 [Roseovarius sp. TM1035]
gi|149144569|gb|EDM32598.1| hypothetical protein RTM1035_03255 [Roseovarius sp. TM1035]
Length = 217
Score = 274 bits (703), Expect = 4e-72, Method: Composition-based stats.
Identities = 87/215 (40%), Positives = 126/215 (58%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +++ + A R V L+AVSK+ ++++ L G +F EN++QEA +W
Sbjct: 3 LSEIRARMDKACTAAGRAPQDVELIAVSKVQPAERVAAVLDQGHRVFGENRVQEAAGRWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ + D+ L IG LQSNK + + +F I +V R K A ++ + R +++Q
Sbjct: 63 AFQDRYTDIVLHLIGPLQSNKARQAMEMFQAIHSVDRPKIAQGIARLAQEMGRCPDLFLQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P + FV CR L V+GLMCIPP P HF LL+++A
Sbjct: 123 VNTGEEPQKAGVLPQEIDGFVAECRALD-LPVKGLMCIPPVEEEPSLHFALLAKMAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 182 LSGLSMGMSGDFESAIAQGATHVRVGSAIFGERDY 216
>gi|85060005|ref|YP_455707.1| hypothetical protein SG2027 [Sodalis glossinidius str. 'morsitans']
gi|84780525|dbj|BAE75302.1| conserved hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 231
Score = 274 bits (703), Expect = 4e-72, Method: Composition-based stats.
Identities = 77/230 (33%), Positives = 110/230 (47%), Gaps = 12/230 (5%)
Query: 1 MSLGN-KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS+ LQ Q+I +A R ++L+AVSK I A+ GQ F EN +Q
Sbjct: 1 MSIIEQNLQRVHQQIRTAAQDCGRDPRQITLLAVSKTKPVTVIEAAIEAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
E +K R+ + + FIG LQSNK + FD T+ R + A L+ + +
Sbjct: 61 EGVEKIGWFRERPEGAGLIWHFIGPLQSNKSRSVAENFDWCHTLDRPQLARRLNDQRPVE 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH--- 173
L V IQ+N E K+GIMP + L + +L + GLM IP + +
Sbjct: 121 RAPLNVLIQINISGEATKAGIMPEEMLTLAALVTECPRLRLRGLMAIPAPESDFQRQLAV 180
Query: 174 FYLLSEIAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F +S + + LS+GMT D AIA+G+T VRIG+ IFG R
Sbjct: 181 FKRMSALYETLQRVHPGVDTLSLGMTDDMPAAIAAGSTLVRIGTAIFGAR 230
>gi|152994581|ref|YP_001339416.1| alanine racemase domain-containing protein [Marinomonas sp. MWYL1]
gi|150835505|gb|ABR69481.1| alanine racemase domain protein [Marinomonas sp. MWYL1]
Length = 242
Score = 274 bits (703), Expect = 4e-72, Method: Composition-based stats.
Identities = 75/230 (32%), Positives = 110/230 (47%), Gaps = 8/230 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ + L Q+++ +R SV L+AVSK + A + GQ F EN +QE
Sbjct: 11 LEIKTNLTRVTQQVDQLVQQYQRETGSVRLLAVSKTKPLSALEAAYAAGQRAFGENYVQE 70
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K+ L D++ FIG +QSNK I + ++ REK A LS + K L
Sbjct: 71 AVDKFHALAHLVDIEWHFIGPIQSNKSRLIAETMHWVHSIDREKIARRLSEQRPKDLPPL 130
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPH 173
V IQVN E K+G+ ++ D V L + L + GLM IP + +P
Sbjct: 131 NVCIQVNISGEESKAGVALSELNDMVALITELPNLRLRGLMAIPAPQKSHEAQCLVYEPL 190
Query: 174 FYLLSEIARECKL-TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
E+++ + LS+GM+ D AI SG+T VR+G+ IFGER
Sbjct: 191 RQAFVELSKSDSMIDTLSIGMSGDLPAAIQSGSTMVRVGTAIFGERDYSA 240
>gi|56476394|ref|YP_157983.1| hypothetical protein ebA1768 [Aromatoleum aromaticum EbN1]
gi|56312437|emb|CAI07082.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length = 233
Score = 274 bits (703), Expect = 4e-72, Method: Composition-based stats.
Identities = 80/228 (35%), Positives = 117/228 (51%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ LQ ++++ +A + R + V+L+AVSK ++ + A GQ +F EN ++E
Sbjct: 3 SISANLQAVRRRVAAAARASGRTPEDVALIAVSKTQPAQSVAEAAHAGQRLFGENYVREG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L ++ FIG LQSNK + + F + +V R K A LS + + L
Sbjct: 63 VAKAAELHAR-QLEWHFIGPLQSNKTRPVATHFHWVHSVDRLKLAERLSEQRGDELPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V IQVN G E KSG+ P + + +L + GLMCIP A G+ + F L
Sbjct: 122 VCIQVNVGGEASKSGVAPGEVPALAAAVAKLPRLALRGLMCIPEAGGDEALLRARFATLR 181
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ L LSMGM+ D ELAIA GAT VR+G+ IFG R +
Sbjct: 182 QLRDRLNDAGLALDTLSMGMSDDLELAIAEGATMVRVGTAIFGARSVR 229
>gi|330815598|ref|YP_004359303.1| Alanine racemase domain protein [Burkholderia gladioli BSR3]
gi|327367991|gb|AEA59347.1| Alanine racemase domain protein [Burkholderia gladioli BSR3]
Length = 236
Score = 274 bits (703), Expect = 4e-72, Method: Composition-based stats.
Identities = 82/232 (35%), Positives = 108/232 (46%), Gaps = 10/232 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L L ++I+++A A R V L+AVSK ++ +R A + GQ F EN +Q
Sbjct: 1 MSDLAASLASVHRRIDDAARSAGRAPGEVVLLAVSKTFPAEAVREAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA K L + FIG LQSNK + FD + +V R K A L+ +
Sbjct: 61 EALDKIAALADLRASLDWHFIGPLQSNKTRVVAEQFDWVHSVDRLKIAQRLAEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V +QVN E KSG+ P + L + GLM IP G
Sbjct: 121 PLNVCVQVNVSGEDSKSGVAPAEAAALAREVAALPTLRLRGLMAIPEPAGELAAQRVPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
LL E+ K L LSMGM+ D E A+ GAT VR+G+ IFG R T
Sbjct: 181 LLRELFDTLKAEGLALDTLSMGMSADLEAAVLEGATIVRVGTAIFGARDYGT 232
>gi|284799539|ref|ZP_05984247.2| pyridoxal phosphate enzyme, YggS family [Neisseria subflava NJ9703]
gi|284798165|gb|EFC53512.1| pyridoxal phosphate enzyme, YggS family [Neisseria subflava NJ9703]
Length = 239
Score = 274 bits (703), Expect = 4e-72, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 108/227 (47%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L Q + +E +A A R D+V LVAVSK + IR + GQ F EN +Q
Sbjct: 9 MSVLQQNYQDVCRAVEQAAEAAGRSADAVKLVAVSKTFPADDIREVYAAGQRDFGENYIQ 68
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E +K L D+ IG +QSNK + + T+ R KTA LS + +
Sbjct: 69 EWFEKTETLADLPDIVWHVIGDVQSNKTKFVAERAHWVHTIGRLKTARRLSEQRPSEMPP 128
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYL 176
L V I+VN E K G+ P + + + + V GLMC+ + + F+
Sbjct: 129 LQVCIEVNIAAEEAKHGVAPTEAVALALEVAKLPNIKVRGLMCVAKADSSDDELRSQFHT 188
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + E + LSMGM+ D +A+ GAT VRIGS IFG+R
Sbjct: 189 MQRLLAELNAAGVEADVLSMGMSGDMPIAVECGATHVRIGSAIFGKR 235
>gi|206890646|ref|YP_002249591.1| hypothetical protein THEYE_A1800 [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206742584|gb|ACI21641.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 236
Score = 274 bits (703), Expect = 4e-72, Method: Composition-based stats.
Identities = 87/230 (37%), Positives = 126/230 (54%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++ +KI +A+ R + + L+AV+K KI+ A G IF EN++QEAK
Sbjct: 2 LSERISSVVKKITYAALRTGRNPEEIKLIAVTKSQPIDKIKEASQLGLRIFGENRVQEAK 61
Query: 63 KKWIPLRK-----EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K L++ + ++ IG LQSNKV E V LF++I ++ EK A L++ E K
Sbjct: 62 IKIEALKEFIAQWKMSIEWHMIGHLQSNKVKEAVRLFEIIHSMDSEKLAILINKEAEKVG 121
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
+ V IQV E K G+ ++ ++ + C L VEGLM IPP NP +P+F
Sbjct: 122 KIQRVLIQVKLSQEESKYGVNIDKIEELMEFCTNLPNLKVEGLMTIPPYFENPEDSRPYF 181
Query: 175 YLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +I L +LSMGM+ DFE+AI GAT VRIG+ +FG+RP
Sbjct: 182 KNLRQIKEILSQKGYCLKELSMGMSNDFEVAIEEGATMVRIGTALFGQRP 231
>gi|167854570|ref|ZP_02477351.1| hypothetical protein HPS_02299 [Haemophilus parasuis 29755]
gi|167854325|gb|EDS25558.1| hypothetical protein HPS_02299 [Haemophilus parasuis 29755]
Length = 227
Score = 274 bits (703), Expect = 5e-72, Method: Composition-based stats.
Identities = 79/226 (34%), Positives = 111/226 (49%), Gaps = 8/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L + Q+I+ A RP+ SV L+AVSK I A+ GQ F EN +QE
Sbjct: 1 MSISQNLAIISQQIQQYCQQANRPEQSVKLLAVSKTKPISAIAEAIEAGQRAFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + ++ FIG LQSNK + FD ++T+ R K A LS + K L
Sbjct: 61 GIEKIQYFAENDTLEWHFIGLLQSNKTRVVAEHFDWVQTIDRLKIAQRLSEQRPKHLPVL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V IQ+N E KSGI + + Q +L + GLM IP P+ +
Sbjct: 121 NVLIQINISDEASKSGISAKEMLELATQISQLPRLKLRGLMAIPKPESEPEQQKIALAQM 180
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E+ + + + LSMGM+ D AI G+T VRIG+ IFG R
Sbjct: 181 NELFLQLQSQFEGIDTLSMGMSDDMPSAIECGSTMVRIGTAIFGAR 226
>gi|92115728|ref|YP_575457.1| hypothetical protein Nham_0096 [Nitrobacter hamburgensis X14]
gi|91798622|gb|ABE60997.1| Protein of unknown function UPF0001 [Nitrobacter hamburgensis X14]
Length = 225
Score = 274 bits (703), Expect = 5e-72, Method: Composition-based stats.
Identities = 95/213 (44%), Positives = 132/213 (61%), Gaps = 1/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +I + A+ + SV+LVAVSK D+ I ++ GQ +F EN++QEA++KW
Sbjct: 13 LASVEAEIVRACRDARCERSSVTLVAVSKTFDTDAIAPVIAAGQQVFGENRVQEAQRKWP 72
Query: 67 PL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L + L IG LQSNK + V LFD I +V R + L+ E+ Q+R +++Q
Sbjct: 73 ELMAAHPGIALHLIGPLQSNKAKDAVGLFDAIHSVDRPSICAALAKEIASQNRRPDLFVQ 132
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
+NTG E QK+G+ P+ F+ CR Y L + GLMCIPPA P PHF L ++IA+
Sbjct: 133 INTGEEPQKAGVAPSDADAFIAACRDTYGLTISGLMCIPPADDAPAPHFALTAKIAKRNG 192
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LT+LSMGM+ DF +AIA GAT VR+GS IFG R
Sbjct: 193 LTQLSMGMSADFAIAIALGATHVRVGSAIFGTR 225
>gi|167630158|ref|YP_001680657.1| hypothetical protein HM1_2089 [Heliobacterium modesticaldum Ice1]
gi|167592898|gb|ABZ84646.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
Length = 229
Score = 274 bits (703), Expect = 5e-72, Method: Composition-based stats.
Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +Q+I ++A+ A R +++ L+AV+K V ++I+ + G + EN++QE
Sbjct: 4 LQENLGRVRQRIRDAAMRAGREPEAIRLLAVTKTVPVEQIQEVVDAGVDLLGENRVQELL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K +R V+ IG+LQ+NKV I D+I ++ R A ++ + R +
Sbjct: 64 AKHRQVRG--SVRWHMIGTLQTNKVKYIYDKVDLIHSLDRLSLAQAINRYAARLGRPIDC 121
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
++VN E K G+ F+ +++ GLM + P + +P +P F L
Sbjct: 122 LVEVNVAGEKSKHGVDRRDLISFIRDVTAFEGIHIRGLMTMAPYVDDPEETRPFFRDLYH 181
Query: 180 IARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++RE ++ LSMGM+ DFE+A+ GAT VRIGS +FG R
Sbjct: 182 LSREVDELGLQRVEMRHLSMGMSNDFEVAVEEGATIVRIGSSLFGGR 228
>gi|54310240|ref|YP_131260.1| TIM-barrel fold family protein [Photobacterium profundum SS9]
gi|46914681|emb|CAG21458.1| Predicted enzyme with a TIM-barrel fold [Photobacterium profundum
SS9]
Length = 244
Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 104/230 (45%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +I +S R DSV L+AVSK I A++ GQ F EN +QE
Sbjct: 14 SIKQNIEQVISQITSSTEKCGRTADSVQLLAVSKTKPIAAIDDAIAVGQRAFGENYVQEG 73
Query: 62 KKKWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K ++ FIG +QSNK I FD + +V R KTA L+ +
Sbjct: 74 VEKVQHFAGHAQAEEIVWHFIGPIQSNKTRPIAEHFDWVHSVDRIKTARRLNEQRPSSMA 133
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L + +QVNT E KSGI L + GLM IP + +
Sbjct: 134 PLNILLQVNTSGEESKSGIHVTDLAALADEIATMPNLVLRGLMSIPQKADSYDSQYAAFK 193
Query: 179 EIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A ++ LSMGM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 194 LLADAQQQLHIKYPQIDTLSMGMSGDMDAAIAAGSTIVRIGTAIFGARDY 243
>gi|154248852|ref|YP_001409677.1| alanine racemase domain-containing protein [Fervidobacterium
nodosum Rt17-B1]
gi|154152788|gb|ABS60020.1| alanine racemase domain protein [Fervidobacterium nodosum Rt17-B1]
Length = 235
Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats.
Identities = 72/223 (32%), Positives = 111/223 (49%), Gaps = 8/223 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + KI A+ R D + +VAV+K + I+ A G IF EN QE +
Sbjct: 12 IKKNYEYVMNKISEHALKVGRKPDEIKIVAVTKTHPVEIIKTAYDVGLRIFGENYAQELR 71
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L D++ +IG +Q+NK+ IV + +I +V R ++ K + +
Sbjct: 72 DKSEQL-NFPDIEWHYIGRIQTNKLKYIVPVAYLIHSVYRINEIEEINKIASKMGKIQKI 130
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM--GNPKPHFYLLSEI 180
I+VN E K GI PN +D + + + V GLM + P + + + +F +L EI
Sbjct: 131 LIEVNVSGEETKGGISPNNIEDLLKESEKFKNVQVIGLMTMAPFVEPESTRKYFRMLREI 190
Query: 181 AREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +LSMGM+ DFE+A+ G+T VRIG+ IFGER
Sbjct: 191 RDGISKRFPNLKELSMGMSNDFEVAVEEGSTIVRIGTAIFGER 233
>gi|293609002|ref|ZP_06691305.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292829575|gb|EFF87937.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 230
Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats.
Identities = 73/227 (32%), Positives = 105/227 (46%), Gaps = 11/227 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q Q+I+ + A+R ++V L+AVSK S+ +R + GQ F EN LQEA
Sbjct: 4 LQDARQHVLQQIQTACEHAQRVPETVQLLAVSKTHPSESLREMYAAGQRAFGENYLQEAL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L D++ FIG +Q NK + FD + V R A LS + L +
Sbjct: 64 EKIEALHD-LDIEWHFIGHVQRNKTKHVAEKFDWVHGVDRLIIAERLSNQRGDDQSALNI 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+QVN + K G P + V Q ++ + GLM IP F +
Sbjct: 123 CLQVNIDGQDSKDGCAPEDVAELVAQISQLPKIKLRGLMVIPAPDNT--AAFADAKALFD 180
Query: 183 ECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
K LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 181 AVKDQHAHPQDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGARDYS 227
>gi|193076643|gb|ABO11330.2| hypothetical protein A1S_0898 [Acinetobacter baumannii ATCC 17978]
Length = 230
Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats.
Identities = 74/227 (32%), Positives = 107/227 (47%), Gaps = 11/227 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q Q+I + LA+R ++V L+AVSK S+++R + GQ F EN LQEA
Sbjct: 4 LQDARQHVLQQIRTACELAQRAPETVQLLAVSKTHPSERLREMYAAGQRAFGENYLQEAL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ D++ FIG +Q NK + FD + V R A LS + L +
Sbjct: 64 DKIDALQD-LDIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQCGDDQAALNI 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+QVN + K G P + V Q ++ + GLM IP F ++
Sbjct: 123 CLQVNIDGQESKDGCAPEDVAELVAQMSQLPKIKLRGLMVIPAPDNT--AAFADAKKLFD 180
Query: 183 ECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
K LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 181 AVKVQHAHPEDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGARDYS 227
>gi|304413270|ref|ZP_07394743.1| alanine racemase N-terminal domain-containing hypothetical protein
[Candidatus Regiella insecticola LSR1]
gi|304284113|gb|EFL92506.1| alanine racemase N-terminal domain-containing hypothetical protein
[Candidatus Regiella insecticola LSR1]
Length = 230
Score = 274 bits (702), Expect = 6e-72, Method: Composition-based stats.
Identities = 72/225 (32%), Positives = 103/225 (45%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + K++I ++A R VSL+AVSK I+ A++ GQ F EN +QEA
Sbjct: 3 TIQQNIHDVKKQIASAAEHCGRSPKEVSLLAVSKTQSVSAIKKAINAGQYAFGENYVQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K ++ FIG LQSNK + F TV K A LS + L
Sbjct: 63 IDKIAYFAHHSKLEWHFIGLLQSNKSRLVAEYFTWCHTVDSLKIAQRLSHQRPGNMPALN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ IQ+N E KSGI N+ L + GLM IP A + + ++
Sbjct: 123 ILIQINISGEKSKSGISLNELPQLAENIYTLPNLQLRGLMAIPAADNDYPRQLAIFQQMH 182
Query: 182 R--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ LS+GMT D AI +G+T VRIG+ IFG R
Sbjct: 183 QAFLLLKENYPQVDTLSLGMTHDMTAAIHAGSTLVRIGTAIFGSR 227
>gi|261823249|ref|YP_003261355.1| alanine racemase domain protein [Pectobacterium wasabiae WPP163]
gi|261607262|gb|ACX89748.1| alanine racemase domain protein [Pectobacterium wasabiae WPP163]
Length = 270
Score = 274 bits (702), Expect = 6e-72, Method: Composition-based stats.
Identities = 70/227 (30%), Positives = 103/227 (45%), Gaps = 11/227 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L + +I + R +V L+ VSK ++R+A G I ENK+QEA +
Sbjct: 27 QRNLAAVQMRIAAACHRVGRDPATVRLLPVSKTKPENRLRMAYMAGCRIVGENKVQEANR 86
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
KW ++ D+Q IG LQ+NK + + + + L ++ + R L V+
Sbjct: 87 KWEAMQDLADLQWSVIGHLQTNKAKLVARFASEFQALDSLRLVEALDRRLLVEGRSLDVF 146
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVNT E K G+ P F+ L V GLM + + F L +
Sbjct: 147 VQVNTSGEASKYGLSPEDVPAFIQALPAFPALRVRGLMTLALFSNEAERVRQCFIRLRNL 206
Query: 181 ARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ L +LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 207 RDRLQQNAPAGIGLDELSMGMSGDFEIAIEEGATVVRVGQAIFGARP 253
>gi|222529335|ref|YP_002573217.1| alanine racemase domain-containing protein [Caldicellulosiruptor
bescii DSM 6725]
gi|222456182|gb|ACM60444.1| alanine racemase domain protein [Caldicellulosiruptor bescii DSM
6725]
Length = 233
Score = 274 bits (702), Expect = 6e-72, Method: Composition-based stats.
Identities = 75/231 (32%), Positives = 116/231 (50%), Gaps = 14/231 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L ++ ++IE + + A R D VSL+ +K VD + I++A G IF EN++QE
Sbjct: 6 TLKKNIEDVMERIEMACLRAGRKPDEVSLLGATKGVDVETIKLANQFGLRIFGENRVQEF 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ L ++ FIG LQ+NK+ I +I +V + L K +
Sbjct: 66 LPKFQELP---YLEWHFIGRLQTNKIKYIYDKVSLIHSVDSPQQIDELEKRCAKAGKACN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V I++N G E K G+ + D + + ++G M IPP + + +F +
Sbjct: 123 VLIEINIGGEESKGGVSIEKVDDLIEKISNCSHVILKGFMTIPPIEDDEMKLRVYFRKMK 182
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
EI + K + LSMGM+ DFE+AI GAT VRIG+ IFGERP +
Sbjct: 183 EIFEKYKKLNYNNVNIEVLSMGMSGDFEVAIEEGATLVRIGTKIFGERPKK 233
>gi|260432321|ref|ZP_05786292.1| pyridoxal phosphate enzyme, YggS family [Silicibacter
lacuscaerulensis ITI-1157]
gi|260416149|gb|EEX09408.1| pyridoxal phosphate enzyme, YggS family [Silicibacter
lacuscaerulensis ITI-1157]
Length = 219
Score = 274 bits (702), Expect = 6e-72, Method: Composition-based stats.
Identities = 92/213 (43%), Positives = 121/213 (56%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ K +I + A R SV+L+AVSK+ + ++ L G F EN++QEA KW
Sbjct: 3 LQDIKDRIAKAEAAAGRSPGSVTLIAVSKVQPNDRVEAVLEQGHRCFGENRVQEAAAKWP 62
Query: 67 PLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+ + L IG LQ+NK + + L + I +V R K A L+ + ++IQ
Sbjct: 63 AFRERFPGIDLHLIGPLQTNKARQAMELCNAIHSVDRPKLAKTLARLAQEIGTCPDLFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P F+ CR L V GLMCIPP P HF LL++IA
Sbjct: 123 VNTGEEPQKAGVLPADADVFIAECRDLD-LPVRGLMCIPPVHEEPALHFALLAKIAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 182 LQGLSMGMSGDFETAIALGATHVRVGSAIFGER 214
>gi|169634028|ref|YP_001707764.1| hypothetical protein ABSDF2533 [Acinetobacter baumannii SDF]
gi|169152820|emb|CAP01843.1| conserved hypothetical protein [Acinetobacter baumannii]
Length = 235
Score = 274 bits (702), Expect = 6e-72, Method: Composition-based stats.
Identities = 75/225 (33%), Positives = 109/225 (48%), Gaps = 7/225 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q Q+I + LA+R ++V L+AVSK S+++R + GQ F EN LQEA
Sbjct: 9 LQDARQHVLQQIRTACELAQREPETVQLLAVSKTHPSERLREMYAAGQRAFGENYLQEAL 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ D++ FIG +Q NK + FD + V R A LS + L +
Sbjct: 69 DKIDALQD-LDIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQRGDDQAALNI 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM-----GNPKPHFYLL 177
+QVN + K G P + V Q ++ + GLM IP + K F +
Sbjct: 128 CLQVNIDGQESKDGCAPEDVAELVAQMSQLPKIKLRGLMVIPAPDNTGAFADAKKLFDAV 187
Query: 178 S-EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ A LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 188 KVQHAHPEDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGARDYS 232
>gi|289209575|ref|YP_003461641.1| alanine racemase domain protein [Thioalkalivibrio sp. K90mix]
gi|288945206|gb|ADC72905.1| alanine racemase domain protein [Thioalkalivibrio sp. K90mix]
Length = 237
Score = 274 bits (702), Expect = 6e-72, Method: Composition-based stats.
Identities = 72/225 (32%), Positives = 107/225 (47%), Gaps = 11/225 (4%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ + +++I ++ A R SV L+AVSK + IR + GQ F EN +QE K
Sbjct: 6 HAFRAVRERIVHACEQAGRDPGSVRLLAVSKTRTADDIRALHALGQTAFGENYVQELIDK 65
Query: 65 WIPL---RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ L ++ +IG+LQSNK + + T+ RE+ A LS + + L
Sbjct: 66 FDALETGPNPLGLEWHYIGALQSNKTRPVAERAHWVHTIDRERIARRLSEQRPEHLPPLQ 125
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
V +Q+N E QK+G+ P L + GLM +P A N + F L
Sbjct: 126 VCLQINVSGESQKAGVPPEAAAALADTVANLPGLTLRGLMTLPAAESNRERQRRPFARLR 185
Query: 179 EIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ E L LSMGM+ D E AI GA+ VRIG+ +FG R
Sbjct: 186 QLKDELNARGHGLDTLSMGMSGDLEAAILEGASLVRIGTALFGPR 230
>gi|117619465|ref|YP_858120.1| hypothetical protein AHA_3664 [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117560872|gb|ABK37820.1| conserved hypothetical protein TIGR00044 [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 233
Score = 274 bits (702), Expect = 6e-72, Method: Composition-based stats.
Identities = 76/230 (33%), Positives = 108/230 (46%), Gaps = 11/230 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L K++I +A A R +D + L+AVSK + + A + GQ F E+ QEA
Sbjct: 4 IAEHLLQVKERIVQAASRAGRSRDHIQLLAVSKTKPLEAVCEAYAAGQRRFGESYAQEAA 63
Query: 63 KKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K LR+ D++ FIG LQSNK + FD +++V REK L+ +
Sbjct: 64 TKIDTLREQGACADIEWHFIGPLQSNKSKLVAERFDWVQSVDREKLIERLNNQRPSGLAP 123
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
L V +Q+N E KSG + L + +L + GLM IP +
Sbjct: 124 LNVCLQINISGESSKSGTSEQEIFRLAELVSRCERLRLRGLMAIPEHTSDEAVLAAQMVR 183
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + E + LSMGMT D ELAI G+T VRIG+ IFG R
Sbjct: 184 MQTLFTELAQQYPGVDTLSMGMTEDLELAIGHGSTMVRIGTAIFGARDYS 233
>gi|197121761|ref|YP_002133712.1| alanine racemase domain protein [Anaeromyxobacter sp. K]
gi|196171610|gb|ACG72583.1| alanine racemase domain protein [Anaeromyxobacter sp. K]
Length = 223
Score = 274 bits (702), Expect = 6e-72, Method: Composition-based stats.
Identities = 76/219 (34%), Positives = 111/219 (50%), Gaps = 10/219 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++L + + V+LVAVSK + IR A + GQ F EN QE
Sbjct: 1 MSIADRLAAIRADL----------PAGVTLVAVSKTQPPEAIREAYAAGQRDFGENYAQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L ++ FIG LQ+NK + ++ V RE+ A+ LS ++
Sbjct: 51 WRAKADALADLPGLRWHFIGGLQTNKAKYLAGRVALVHAVDREELAAELSRRFGQKGATA 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V ++VN G E K G P++ + R + + GLMCIPP +P+PHF L +
Sbjct: 111 RVLLEVNVGGEASKEGCPPDRVEALAAAVRALPSIELAGLMCIPPPDDDPRPHFRALRAL 170
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +LSMGM+ D+ +A+ GAT VR+GS IFG RP
Sbjct: 171 RDRLGLRELSMGMSADWRIAVEEGATLVRVGSAIFGARP 209
>gi|184157169|ref|YP_001845508.1| TIM-barrel fold family protein [Acinetobacter baumannii ACICU]
gi|332874170|ref|ZP_08442094.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter baumannii
6014059]
gi|183208763|gb|ACC56161.1| predicted enzyme with a TIM-barrel fold [Acinetobacter baumannii
ACICU]
gi|322507066|gb|ADX02520.1| TIM-barrel fold family protein [Acinetobacter baumannii 1656-2]
gi|323516933|gb|ADX91314.1| TIM-barrel fold family protein [Acinetobacter baumannii
TCDC-AB0715]
gi|332737645|gb|EGJ68548.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter baumannii
6014059]
Length = 230
Score = 274 bits (701), Expect = 7e-72, Method: Composition-based stats.
Identities = 75/225 (33%), Positives = 109/225 (48%), Gaps = 7/225 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q Q+I + LA+R ++V L+AVSK S+++R + GQ F EN LQEA
Sbjct: 4 LQDARQHVLQQIRTACELAQRAPETVQLLAVSKTHPSERLREMYAAGQRAFGENYLQEAL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ D++ FIG +Q NK + FD + V R A LS + L +
Sbjct: 64 DKIDALQD-LDIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQRGDDQAALNI 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM-----GNPKPHFYLL 177
+QVN + K G P + V Q ++ + GLM IP + K F +
Sbjct: 123 CLQVNIDGQESKDGCAPEDVAELVAQMSQLPKIKLRGLMVIPAPDNTGAFADAKKLFDAV 182
Query: 178 S-EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ A LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 183 KVQHAHPEDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGARDYS 227
>gi|319638710|ref|ZP_07993469.1| hypothetical protein HMPREF0604_01093 [Neisseria mucosa C102]
gi|317399951|gb|EFV80613.1| hypothetical protein HMPREF0604_01093 [Neisseria mucosa C102]
Length = 232
Score = 274 bits (701), Expect = 7e-72, Method: Composition-based stats.
Identities = 75/227 (33%), Positives = 110/227 (48%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L + + +E +A A RP D+V LVAVSK + IR + GQ F EN +Q
Sbjct: 1 MSVLQQNYRDVCRAVEQAAEAAGRPADAVKLVAVSKTFPADDIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E +K L D+ IG +QSNK + + T+ R KTA LS + +
Sbjct: 61 EWFEKTETLADLPDIVWHVIGDVQSNKTKFVAERAHWVHTIGRLKTARRLSEQRPSEMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYL 176
L V I+VN E K G+ P++ + + + V GLMC+ + + F+
Sbjct: 121 LQVCIEVNIAAEEAKHGVAPDEAVGLALEVAKLPNIKVRGLMCVAKADSSDDELRSQFHT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + E + LSMGM+ D +A+ GAT +RIGS IFG+R
Sbjct: 181 MQRLLAELNTAGVEADVLSMGMSGDMPIAVECGATHIRIGSAIFGKR 227
>gi|77166450|ref|YP_344975.1| hypothetical protein Noc_3003 [Nitrosococcus oceani ATCC 19707]
gi|254435047|ref|ZP_05048554.1| conserved hypothetical protein TIGR00044 [Nitrosococcus oceani
AFC27]
gi|76884764|gb|ABA59445.1| Protein of unknown function UPF0001 [Nitrosococcus oceani ATCC
19707]
gi|207088158|gb|EDZ65430.1| conserved hypothetical protein TIGR00044 [Nitrosococcus oceani
AFC27]
Length = 231
Score = 274 bits (701), Expect = 7e-72, Method: Composition-based stats.
Identities = 85/230 (36%), Positives = 118/230 (51%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + +L +I + RPK SVSLVA SK IR A++CGQ F EN LQ
Sbjct: 1 MTQIAQQLAEVYTRIAQAEQRFGRPKGSVSLVAASKTCPVSAIRAAVACGQRAFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L E ++ FIG +QSNK +I + FD + +V+R K A LS + +
Sbjct: 61 EALPKIKELETE-GLEWHFIGPIQSNKTRDIATHFDWVHSVARLKIAQRLSQQRPPELAP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
L V +QVN E KSG + + + +L++ GLM +P + + F
Sbjct: 120 LNVCLQVNISGESSKSGTTAQELAELATAVVEMPRLSLRGLMTLPALNSDLEAQRRPFRT 179
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L ++ + L LSMGMT D E AIA GAT VR+G+ IFG RP +
Sbjct: 180 LHQLWEGLRQKGLTLDSLSMGMTDDLEAAIAEGATLVRVGTAIFGSRPRK 229
>gi|56698252|ref|YP_168625.1| alanine racemase domain-containing protein [Ruegeria pomeroyi
DSS-3]
gi|56679989|gb|AAV96655.1| alanine racemase domain protein [Ruegeria pomeroyi DSS-3]
Length = 232
Score = 274 bits (701), Expect = 8e-72, Method: Composition-based stats.
Identities = 97/213 (45%), Positives = 129/213 (60%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ K +I + A RP SV L+AVSK+ ++++ L G IF EN++QEA KW
Sbjct: 16 LQEIKNRIARAEQAANRPDGSVKLIAVSKVQPNERVEAVLEQGHRIFGENRVQEAAGKWP 75
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ +D V+L IG LQ+NK + + L I +V R K A+ L+ + R ++IQ
Sbjct: 76 AFMERYDGVELHLIGPLQTNKARQAMELVHAIHSVDRPKLATTLARLAQELGRCPDLFIQ 135
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GIMP + F+ CR L V+GLMCIPP P HF LL++IA
Sbjct: 136 VNTGEEDQKAGIMPAEADGFIAECRALD-LPVQGLMCIPPVEEEPALHFALLAKIAARNG 194
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ LSMGM+ DFE AIA GAT VR+GS IFG+R
Sbjct: 195 LSGLSMGMSGDFESAIALGATHVRVGSAIFGDR 227
>gi|89902638|ref|YP_525109.1| hypothetical protein Rfer_3879 [Rhodoferax ferrireducens T118]
gi|89347375|gb|ABD71578.1| Protein of unknown function UPF0001 [Rhodoferax ferrireducens T118]
Length = 239
Score = 274 bits (701), Expect = 8e-72, Method: Composition-based stats.
Identities = 76/225 (33%), Positives = 108/225 (48%), Gaps = 9/225 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +LQ + ++ + A R V+L+AVSK V + + A GQ F EN +QEA
Sbjct: 8 LQTQLQSVRARVTTACQAAGRAASEVTLLAVSKTVAPEIVTQAFEAGQRAFGENYIQEAV 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K LR ++ IG +QSNK + FD ++T+ R K A LS + L V
Sbjct: 68 EKISHLR-HLPLEWHCIGPIQSNKTRLVAEHFDWVQTLDRLKIAQRLSDQRPAGRPPLQV 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-- 180
IQVN KSG+ P++ + L + G+M IP + L + +
Sbjct: 127 CIQVNVDGGASKSGVSPSEALALAQRVAELPNLRLRGIMSIPEPTPDFVAACALFARVKA 186
Query: 181 ------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
A L LSMGM+ D E AI SG+T VR+G+ IFG RP
Sbjct: 187 VFDALNAEGLALDTLSMGMSADMEAAIQSGSTMVRVGTAIFGGRP 231
>gi|323486921|ref|ZP_08092237.1| hypothetical protein HMPREF9474_03988 [Clostridium symbiosum
WAL-14163]
gi|323399784|gb|EGA92166.1| hypothetical protein HMPREF9474_03988 [Clostridium symbiosum
WAL-14163]
Length = 234
Score = 274 bits (701), Expect = 8e-72, Method: Composition-based stats.
Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L K+ I ++ + R V+L+AVSK + +R A G F ENK+QE
Sbjct: 2 IRENLNDVKENIVSACRASNRQPQDVTLIAVSKTKPVELLREAYDAGVRDFGENKVQEIL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L D++ IG LQ NKV +++ +I +V A + E K++ + +
Sbjct: 62 EKAPALPD--DIRWHMIGHLQKNKVRQVIDKTVLIHSVDTVALAEQIEKEAAKKNIDVDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSE 179
++VN G E K G + + V + + ++++GLM I P + N + + F L +
Sbjct: 120 LLEVNIGEEESKYGFRAGEVLEAVTIISKFSHVHIKGLMTIAPFVENSEENRDIFLKLYQ 179
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + LSMGMT D+ AI GAT +R+G+GIFG R
Sbjct: 180 LNVDIKSKNIDNVNMAVLSMGMTGDYMTAIEEGATMIRVGTGIFGAR 226
>gi|262280014|ref|ZP_06057799.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|262260365|gb|EEY79098.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
Length = 235
Score = 274 bits (701), Expect = 8e-72, Method: Composition-based stats.
Identities = 73/227 (32%), Positives = 109/227 (48%), Gaps = 11/227 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q Q+I + A+R ++V L+AVSK S+ +R + GQ F EN LQEA
Sbjct: 9 LQDARQHVLQQIRRACEHAQRAPETVQLLAVSKTHPSESLREMYAAGQRAFGENYLQEAL 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L+ +++ FIG +Q NK + FD + V R A LS + ++ L +
Sbjct: 69 EKIEALQD-LEIEWHFIGHVQRNKTKNLAEKFDWVHGVDRLIIAERLSNQRLQDQSDLNI 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+QVN + K G P++ V Q ++ + GLM IP F +
Sbjct: 128 CLQVNIDGQDSKDGCAPDEVAALVAQISQLPKIRLRGLMVIPAPDNT--AAFADAKRLFD 185
Query: 183 ECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E K LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 186 EVKEKHAHPQDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGARDYS 232
>gi|317131682|ref|YP_004090996.1| alanine racemase domain protein [Ethanoligenens harbinense YUAN-3]
gi|315469661|gb|ADU26265.1| alanine racemase domain protein [Ethanoligenens harbinense YUAN-3]
Length = 242
Score = 274 bits (701), Expect = 8e-72, Method: Composition-based stats.
Identities = 70/227 (30%), Positives = 114/227 (50%), Gaps = 11/227 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + +IE +A ++ R D+V+LVAV+K + + + AL G +F EN++QE
Sbjct: 16 IARNLDAVRARIEQAARVSGRSADAVTLVAVTKTMPASDVNAALVHGVRVFGENRVQELL 75
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K +R IG LQ+NKV +++ +I++V A + + K+ + V
Sbjct: 76 GKLPDIRLGEGQCAHLIGHLQTNKVRQVIDKVAMIQSVDSVHLAEEIDKQAAKRGLRMDV 135
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSE 179
I+VN G E KSG+ P + L V GLM +PP + +P+F + +
Sbjct: 136 LIEVNIGGEEAKSGVPPQDLPALLEAAAGFPHLRVCGLMAVPPVCADKEAVRPYFRAMRK 195
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + LSMGM+ DF++AI G+T VR+G+ IFG R
Sbjct: 196 LFIDIAPKKSDNVSMHILSMGMSGDFDIAIEEGSTMVRVGTAIFGRR 242
>gi|90421008|ref|ZP_01228912.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90334786|gb|EAS48562.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 224
Score = 274 bits (701), Expect = 8e-72, Method: Composition-based stats.
Identities = 117/220 (53%), Positives = 147/220 (66%), Gaps = 1/220 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L +L+ +Q + ++ A R D+V+LVAVSK D+ I L GQ IF ENK+QEA
Sbjct: 4 ALLERLETVRQAVAQASREAGRADDAVALVAVSKTHDADTILPVLEAGQRIFGENKVQEA 63
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K KW LR+ +V+LR IG LQSNK E V+LFDVIE+V REK A L+ EM KQ R
Sbjct: 64 KAKWPALRERFPEVELRLIGPLQSNKAGEAVALFDVIESVDREKIAKELAEEMAKQDRHP 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+Y+QVNTG E QK+GI P + FV CR ++ L +EGLMCIPPA P PHF LL +I
Sbjct: 124 RLYVQVNTGEEDQKAGIAPREAVAFVERCRSEHGLRIEGLMCIPPAEEKPGPHFALLEKI 183
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
A E + KLSMGM+ D+E+AI GATSVR+GS IFG R
Sbjct: 184 AAEAGVEKLSMGMSGDYEIAIGFGATSVRVGSAIFGARNY 223
>gi|209883515|ref|YP_002287372.1| pyridoxal phosphate enzyme, YggS family [Oligotropha
carboxidovorans OM5]
gi|209871711|gb|ACI91507.1| pyridoxal phosphate enzyme, YggS family [Oligotropha
carboxidovorans OM5]
Length = 229
Score = 273 bits (700), Expect = 8e-72, Method: Composition-based stats.
Identities = 95/212 (44%), Positives = 131/212 (61%), Gaps = 1/212 (0%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67
+ +++I + A R + SV L+AVSK D+ I ++ GQ +F EN++QEAK KW P
Sbjct: 18 REVEREIARACADAGRDRGSVELIAVSKTFDADAISPVIAAGQRVFGENRVQEAKAKWPP 77
Query: 68 LRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L++ D++L IG LQSNK E V LFD I +V R LS E+ + R ++ Q+
Sbjct: 78 LKEATLDIKLHLIGPLQSNKAREAVMLFDAIHSVDRASLCEALSKEIKSRDRHPLLFAQI 137
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL 186
NTG E QK+G+ P F+ CR++Y L + GLMCIPPA P PHF L ++IA L
Sbjct: 138 NTGEEPQKAGVAPQDADAFLAACRERYGLTISGLMCIPPAEEAPAPHFALTAKIAERNGL 197
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ DF +AI GAT +R+GS IFG+R
Sbjct: 198 KLLSMGMSADFAVAIQFGATHIRVGSAIFGKR 229
>gi|119513658|ref|ZP_01632662.1| hypothetical protein N9414_22978 [Nodularia spumigena CCY9414]
gi|119461687|gb|EAW42720.1| hypothetical protein N9414_22978 [Nodularia spumigena CCY9414]
Length = 222
Score = 273 bits (700), Expect = 9e-72, Method: Composition-based stats.
Identities = 76/221 (34%), Positives = 111/221 (50%), Gaps = 14/221 (6%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
++I I A P SV L+AVSK ++ IR A + G F EN++QEA K L
Sbjct: 4 SISERITT--IRASLPP-SVRLIAVSKTFPAEDIRAAYNAGIRDFGENRIQEAASKQAEL 60
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
+ D+ FIG LQSNK + + LFD I +V K A L+ + V +QV
Sbjct: 61 QDLPDITWHFIGGLQSNKAKKALELFDWIHSVDNLKLAQRLNQLAQQLGVTPQVCLQVKI 120
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIARE-- 183
+ KSG + + Q L ++GLM IPP N F ++A+E
Sbjct: 121 LPDPNKSGWTVPELLADLDALNQCKNLQIQGLMTIPPLGLNDTEIISVFNATHKLAQEIE 180
Query: 184 ------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K+ +LSMGM+ D++LA+ +GAT VR+G+ +FG+R
Sbjct: 181 EQNWSHLKMPELSMGMSGDYQLAVQAGATMVRLGTILFGKR 221
>gi|145589964|ref|YP_001156561.1| alanine racemase domain-containing protein [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145048370|gb|ABP34997.1| alanine racemase domain protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 241
Score = 273 bits (700), Expect = 9e-72, Method: Composition-based stats.
Identities = 79/237 (33%), Positives = 114/237 (48%), Gaps = 17/237 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +++IE + + AKR + V L+AVSK + + A+ GQ F EN +QEA
Sbjct: 4 IAMNLVQVQERIELAVLAAKREPEEVELLAVSKTFPAAAVEEAMHAGQSAFGENYVQEAV 63
Query: 63 KKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK--QSRF 119
+K + L K + FIG LQSNK E+ FD + +V R K A LS + + +
Sbjct: 64 EKILKLSKLRPWLTWHFIGPLQSNKTREVAEHFDWVHSVDRLKIAERLSTQRGEFSELAP 123
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
L + +QVN E KSGI + + Q + + GLM IP NP + F
Sbjct: 124 LQLCVQVNVSEEESKSGIALTEAETLCNAISQLPHVVLRGLMAIPAPTDNPAAQREAFAT 183
Query: 177 LSEIARECK-----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + LSMGM+ D E AIA G+T VR+G+ IFG+R T
Sbjct: 184 VRACFERIRDTHTIEPGFQFFDTLSMGMSDDLEAAIAEGSTMVRVGTAIFGKRDKIT 240
>gi|37625084|gb|AAQ95748.1| conserved hypothetical protein [Aeromonas hydrophila]
Length = 233
Score = 273 bits (700), Expect = 9e-72, Method: Composition-based stats.
Identities = 77/233 (33%), Positives = 109/233 (46%), Gaps = 12/233 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K++I +A A R D + L+AVSK + + A + GQ F E+ Q
Sbjct: 1 MSQIAEHLLQVKERIVQAASRAGRRGDHIQLLAVSKTKPLEAVCEAYAAGQRRFGESYAQ 60
Query: 60 EAKKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
EA K LR+ D++ FIG LQSNK + FD +++V REK L+ +
Sbjct: 61 EAATKIDTLREQGTCTDIEWHFIGPLQSNKSKLVAERFDWVQSVDREKLIERLNNQRPAG 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPH 173
L V +Q+N E KSG + L + +L + GLM IP +
Sbjct: 121 LAPLNVCLQINISGESSKSGTSEQEIFRLAELVSRCERLRLRGLMAIPEHTSDEAVLAAQ 180
Query: 174 FYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + E + LSMGMT D ELAI G+T VR+G+ IFG R
Sbjct: 181 MVRMQTLFTELARQYPGVDTLSMGMTEDLELAIGHGSTMVRVGTAIFGARDYS 233
>gi|146337353|ref|YP_001202401.1| putative signal peptide [Bradyrhizobium sp. ORS278]
gi|146190159|emb|CAL74151.1| conserved hypothetical protein; putative signal peptide
[Bradyrhizobium sp. ORS278]
Length = 227
Score = 273 bits (700), Expect = 9e-72, Method: Composition-based stats.
Identities = 94/215 (43%), Positives = 126/215 (58%), Gaps = 1/215 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L +Q+I+ + AKR + +V+L+AVSK + I + GQ +F EN++QEAK K
Sbjct: 13 SALAAVEQEIQRACSDAKRDRSAVTLIAVSKTFAADAIEPVILAGQRVFGENRVQEAKGK 72
Query: 65 WIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W + + L IG LQSNK E V+LF I +V R S L+ E+ Q R ++
Sbjct: 73 WPVMMAAHPGLSLHLIGPLQSNKAKEAVALFHAIHSVDRPSLCSALAKEIGAQGRHPQLF 132
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+Q+NTG E QK+GI P F+ CR+ Y L + GLMCIPP P PHF L ++IA
Sbjct: 133 VQINTGEEPQKAGIAPGDADAFIAACRRDYGLEISGLMCIPPVDEAPGPHFALTAKIAAR 192
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DF AI GAT VR+GS IFG R
Sbjct: 193 NGLANLSMGMSADFAAAIQFGATHVRVGSAIFGHR 227
>gi|323700142|ref|ZP_08112054.1| alanine racemase domain protein [Desulfovibrio sp. ND132]
gi|323460074|gb|EGB15939.1| alanine racemase domain protein [Desulfovibrio desulfuricans ND132]
Length = 235
Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats.
Identities = 80/228 (35%), Positives = 107/228 (46%), Gaps = 10/228 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + ++ + +A A R + V+LVAVSK+ + IR GQ F EN +QEA
Sbjct: 8 LAERAAEVREALAVAAGQAGRAAEDVTLVAVSKLHPASDIRDLAETGQTEFGENYVQEAL 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L +V FIG LQSNK + F ++ +V K A L + + +
Sbjct: 68 DKQNELAG-LNVNWHFIGGLQSNKAKYVAGKFALVHSVDSSKLAQALHKKAVSLDVVQDI 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQVN E QKSGI + L + GLM +PP P +P F L E
Sbjct: 127 LIQVNIAGETQKSGITVESLPELAEAVLGMEGLRLVGLMTMPPFFDEPERARPVFARLRE 186
Query: 180 IARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + L LSMGMT DF A+ GAT VRIG+ IFG RP +
Sbjct: 187 LRDGLEPRLGVSLPHLSMGMTGDFVPAVQEGATLVRIGTRIFGARPPR 234
>gi|325121225|gb|ADY80748.1| conserved hypothetical protein [Acinetobacter calcoaceticus PHEA-2]
Length = 230
Score = 273 bits (700), Expect = 1e-71, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 108/230 (46%), Gaps = 12/230 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + Q Q+I+ + A+R ++V L+AVSK S+ +R + GQ F EN LQ
Sbjct: 1 MNYLQDARQHVLQQIQTACEHAQRAPETVQLLAVSKTHPSESLREMYAAGQRAFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L+ D++ FIG +Q NK + FD + V R A LS +
Sbjct: 61 EALDKVEALQD-LDIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQRGNDQSA 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN + K G P + + V Q ++ + GLM IP F
Sbjct: 120 LNICLQVNIDGQDSKDGCAPEEVAELVGQMSQLPKIKLRGLMVIPAPDNT--AAFADAKA 177
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ K LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 178 LFDAVKDQHTHPEDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGARDYS 227
>gi|152981077|ref|YP_001353697.1| hypothetical protein mma_2007 [Janthinobacterium sp. Marseille]
gi|151281154|gb|ABR89564.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
Length = 267
Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats.
Identities = 71/225 (31%), Positives = 102/225 (45%), Gaps = 11/225 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + +I + R V L+ VSK +R+A + G ENK+QEA KW
Sbjct: 26 NLTAVQLRIAAACRCVGRDPAEVRLLPVSKTKPEASLRLAYAAGCRTLGENKVQEAHHKW 85
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++ D+ IG LQ+NK + + + + A L + + R L V++Q
Sbjct: 86 EAMQDLTDLHWSVIGHLQTNKAKLVARFATEFQALDSLRLAEALDRRLQIEGRSLDVFVQ 145
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
VNT E K G+ P FV L V GLM + + F+LL +
Sbjct: 146 VNTSGEASKYGLAPADVAAFVQALPSYSALRVRGLMTLALFSSEEERVRQCFFLLRTLRE 205
Query: 183 ECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + L +LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 206 QLRQSAPAGISLDELSMGMSGDFEIAIEEGATVVRVGQAIFGARP 250
>gi|78065293|ref|YP_368062.1| hypothetical protein Bcep18194_A3817 [Burkholderia sp. 383]
gi|77966038|gb|ABB07418.1| protein of unknown function UPF0001 [Burkholderia sp. 383]
Length = 257
Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats.
Identities = 80/231 (34%), Positives = 111/231 (48%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L+ Q+I ++A A R +VSL+AVSK + +R A + GQ F EN +Q
Sbjct: 26 MSDLAARLESVHQRIADAARAAGRDPATVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQ 85
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L D++ FIG LQSNK + FD + +V R K A LS +
Sbjct: 86 ESIDKIDALADLRADLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLSEQRPAHLP 145
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V +QVN E KSG+ P + L + GLM IP G+ +
Sbjct: 146 PLNVCVQVNISGEASKSGVAPGDVAEVARAVAALPSLRLRGLMAIPEPAGDTEAQRAPHR 205
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D + A+ GAT VR+G+ IFG R
Sbjct: 206 ALRALFDTLRADGLPLDTLSMGMSADLDAAVLEGATIVRVGTAIFGARDYS 256
>gi|39935862|ref|NP_948138.1| hypothetical protein RPA2795 [Rhodopseudomonas palustris CGA009]
gi|39649716|emb|CAE28237.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
CGA009]
Length = 260
Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats.
Identities = 74/223 (33%), Positives = 105/223 (47%), Gaps = 9/223 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +++I + R V L+ V+K V + + A + G F ENKLQEA+ K
Sbjct: 26 NLTSVQERIAAACHRCGRSAGEVRLLPVTKTVPAGVLLRAYAAGISEFGENKLQEARDKR 85
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L ++ IG LQ+NKV +V + + A L+ + + R L V++Q
Sbjct: 86 DILADLP-IRWSIIGHLQTNKVKYLVRFAAEFHALDSPRLADELNRRLDAEGRDLDVFVQ 144
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIAR 182
VNT E K G+ P F+ +L GLM + G + F LL E+
Sbjct: 145 VNTSGEASKYGLAPCDLVPFIERLSDYPRLKPRGLMTLAIFSAETGRVRGCFRLLRELRD 204
Query: 183 -----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LT+LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 205 RAIRVHPDLTELSMGMSGDFEIAIEEGATVVRVGQAIFGARPT 247
>gi|254447389|ref|ZP_05060855.1| conserved hypothetical protein TIGR00044 [gamma proteobacterium
HTCC5015]
gi|198262732|gb|EDY87011.1| conserved hypothetical protein TIGR00044 [gamma proteobacterium
HTCC5015]
Length = 234
Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats.
Identities = 71/227 (31%), Positives = 106/227 (46%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + +I+ + A V L+AVSK + ++ GQ F EN LQ+A
Sbjct: 8 IIDNWHNVLHRIDQACQTADCDT-PVKLLAVSKTKPAWMVKALYDKGQRDFGENYLQDAL 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L ++ FIG +QSNK + I FD + +V R K A LS + ++ L +
Sbjct: 67 EKIEALGTLDEIHWHFIGQIQSNKTATIAQYFDWVHSVDRFKIARRLSEQRPERLSALNL 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSE 179
+Q+N E QK G+ P L + GLM IP + + F L +
Sbjct: 127 CLQINIDNEPQKGGVAPEDAAKLAREIETLPNLRLRGLMAIPKPANSEEQQLASFKSLED 186
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ K LSMGM+ D E AIA+G+T VR+GS IFG R
Sbjct: 187 LFQQIKSQLKKAEDFDTLSMGMSGDLESAIAAGSTMVRVGSDIFGAR 233
>gi|294788029|ref|ZP_06753273.1| pyridoxal phosphate enzyme, YggS family [Simonsiella muelleri ATCC
29453]
gi|294484322|gb|EFG32005.1| pyridoxal phosphate enzyme, YggS family [Simonsiella muelleri ATCC
29453]
Length = 227
Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats.
Identities = 73/226 (32%), Positives = 109/226 (48%), Gaps = 8/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + Q Q+I + A+R SV+L+AVSK + IR GQ F EN +QE
Sbjct: 2 MKLEHNRQSVLQQIRIAEQNAQRVSGSVNLIAVSKTFPAADIRQLYQHGQRDFGENYIQE 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K I L ++Q IG +QSNK + + T+ R K A L + L
Sbjct: 62 WQEKTIQLMDCNEIQWHIIGHVQSNKTRAVAEHAHWLHTLDRAKIAERLHEQRPDSLPPL 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+ I++N E K GI P++ +L + GLMC+ A + F +
Sbjct: 122 NICIEINIANERTKHGIQPDELLPLARTVLSLSKLRLRGLMCVAQANATETELRQQFNRM 181
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E+ R+ + LSMGM+ D +AI GAT VR+G+ IFG+R
Sbjct: 182 AELLRQLQTIAPNADTLSMGMSGDMNVAIECGATMVRVGTAIFGKR 227
>gi|329890839|ref|ZP_08269182.1| hypothetical protein BDIM_25470 [Brevundimonas diminuta ATCC 11568]
gi|328846140|gb|EGF95704.1| hypothetical protein BDIM_25470 [Brevundimonas diminuta ATCC 11568]
Length = 253
Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 116/227 (51%), Gaps = 9/227 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L + ++I + RP DSV L+ ++K V ++ +R+A + G F ENKLQEA+
Sbjct: 20 AANLALVHRRIAAACEQVGRPIDSVRLLPITKTVPAEILRLAWAAGVTDFGENKLQEARD 79
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K + ++ +G LQSNKV + L D + K A +L+ + R + VY
Sbjct: 80 KAEAMADLP-MRWHVVGHLQSNKVKYLTRLADEFHALDSLKLAEVLNKRLETDGRDMKVY 138
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVNT E K G+ P+ DF+ +L +GLM + + +P F LL +
Sbjct: 139 VQVNTSGEESKFGLHPDDALDFIERLEAFPRLKPQGLMTLAIFSDDADRVRPCFTLLRSL 198
Query: 181 AR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ ++T LSMGMT D+ELA+ GAT VR+G IFG RP
Sbjct: 199 RDRAERIDARITGLSMGMTGDYELAVREGATVVRVGQAIFGPRPTPN 245
>gi|39997639|ref|NP_953590.1| hypothetical protein GSU2544 [Geobacter sulfurreducens PCA]
gi|39984531|gb|AAR35917.1| conserved hypothetical protein TIGR00044 [Geobacter sulfurreducens
PCA]
gi|298506579|gb|ADI85302.1| pyridoxal phosphate-dependent enzyme, class III [Geobacter
sulfurreducens KN400]
Length = 231
Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats.
Identities = 82/232 (35%), Positives = 115/232 (49%), Gaps = 13/232 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L KI +A A R SV LVAVSK + ++ + A GQ +F EN +QE
Sbjct: 1 MAIADNLTHILAKIAAAARRAGRDPASVRLVAVSKTIPAEAVEDAARAGQRLFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K +R V+ FIG LQSNKV + L I +V R A + + K
Sbjct: 61 FTAKAREVRD--PVEWHFIGHLQSNKVKYLAGLVTCIHSVDRLSLAEEIDRQWAKLDAVC 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+ +QVN E KSG ++ D V + V GLM +PP +P +P+F L
Sbjct: 119 DILVQVNIADEETKSGTSASELTDLVAAMATLPHVRVRGLMTMPPFFDDPEEARPYFREL 178
Query: 178 SEIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A +T+LSMGM+ DFE A+ GAT VRIG+ +FGER +
Sbjct: 179 RRLADAVAAENIPGISMTELSMGMSGDFEAAVEEGATLVRIGTALFGERVYR 230
>gi|320354290|ref|YP_004195629.1| alanine racemase domain-containing protein [Desulfobulbus
propionicus DSM 2032]
gi|320122792|gb|ADW18338.1| alanine racemase domain protein [Desulfobulbus propionicus DSM
2032]
Length = 235
Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats.
Identities = 90/228 (39%), Positives = 128/228 (56%), Gaps = 14/228 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L I +A + R D+V LVAVSK V + I A++ GQ++F EN LQEA
Sbjct: 2 IVDNLTRILTTIATAARRSGRHPDTVQLVAVSKQVGVEAICEAVAGGQMLFGENYLQEAA 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L VQ FIG LQSNK +++ LF ++ETV R K A L L + + L +
Sbjct: 62 DKIPQLP--PTVQWHFIGHLQSNKAAQVAELFTMVETVDRFKVAKALDLHAKRLDKHLSI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQVN G E QKSG+MP +T + + + L V GLM +PP +P +P+F L E
Sbjct: 120 LIQVNIGREKQKSGVMPEETTELLHAISAETNLRVRGLMALPPFFSDPEKSRPYFRALRE 179
Query: 180 IARECKLT---------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A++ + +LSMGM+ D+ +AI GAT VR+G+ +FG R
Sbjct: 180 LAQQLAVKKLFHDNDAIELSMGMSNDYPVAIEEGATIVRVGTALFGSR 227
>gi|319943328|ref|ZP_08017610.1| alanine racemase domain protein [Lautropia mirabilis ATCC 51599]
gi|319743143|gb|EFV95548.1| alanine racemase domain protein [Lautropia mirabilis ATCC 51599]
Length = 278
Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats.
Identities = 68/226 (30%), Positives = 96/226 (42%), Gaps = 11/226 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ L +IE + R +V L+ VSK IR A + G ENK+QEA
Sbjct: 33 RHNLAAVHARIEAACQRVGRDPATVRLLPVSKTKGEDAIRAAYAAGCRFLGENKVQEAYG 92
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
KW ++ D++ IG LQ+NK + + + + A L + + R L V+
Sbjct: 93 KWQAMQDLTDLKWSVIGHLQTNKAKVVARFAAEFQALDSLRVAEALDKRLQAEGRSLDVF 152
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL------ 177
+QVNT E K G+ P FV L V GLM + +
Sbjct: 153 VQVNTSGEPSKFGLSPEDVPAFVQALPGFSALRVRGLMTLALFSSEAERVRQCFILLRSL 212
Query: 178 -----SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E +LSMGM+ D+E+AI GAT VR+G IFG R
Sbjct: 213 RDRLRQEAPAGLSFDELSMGMSGDYEIAIEEGATVVRVGQAIFGAR 258
>gi|253998334|ref|YP_003050397.1| alanine racemase domain-containing protein [Methylovorus sp.
SIP3-4]
gi|253985013|gb|ACT49870.1| alanine racemase domain protein [Methylovorus sp. SIP3-4]
Length = 233
Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats.
Identities = 83/231 (35%), Positives = 116/231 (50%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + +LQ + +I SA A R ++L+AVSK ++ IR A + GQ F EN LQ
Sbjct: 1 MSAITERLQAVQARICQSATAAGRDPQEITLLAVSKAQNADAIRDAWAAGQQRFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L+ ++ FIG +QSNK I F + V R K A L+ +
Sbjct: 61 EALNKQALLQDLP-IEWHFIGPIQSNKTQPIAQHFSWVHGVDRLKIAERLNAARPAELPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYL 176
L + +QVN +E KSGI P + Q +L + GLM IP P M + F +
Sbjct: 120 LQICLQVNVSHEESKSGIAPEEAYALASAITQLPRLQLRGLMAIPAPTPDMELQRAQFRM 179
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + + L LS+GM+ DF +AI GAT VR+GS IFG RP +
Sbjct: 180 VRALYDALRQQGIALDTLSIGMSEDFPVAIGEGATIVRVGSAIFGPRPAKA 230
>gi|223936777|ref|ZP_03628687.1| alanine racemase domain protein [bacterium Ellin514]
gi|223894628|gb|EEF61079.1| alanine racemase domain protein [bacterium Ellin514]
Length = 241
Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats.
Identities = 80/231 (34%), Positives = 118/231 (51%), Gaps = 11/231 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L L+ +Q+I + A R ++V+L AVSK IR A G +F ENK+QE
Sbjct: 1 MALAENLEKIQQRINAACERAGRQPETVTLQAVSKGQLPAAIREASKLGLTLFGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
AK K +++ IG LQSNK + V F +I++V A + K ++ +
Sbjct: 61 AKAKIGQCPA--NLRWHMIGHLQSNKCRDAVHFFQMIQSVDSLALAQEIDKWADKSAKTM 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
P+ ++VN E K G P+Q ++ +++ + GLM I P P +P F L
Sbjct: 119 PILLEVNIAGESSKFGYRPDQLLSELLQINALHKIEIHGLMTIAPWTPEPEKVRPIFQKL 178
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ EC+ L LSMGM+ DFE+AI GAT VRIG+ +FG R T
Sbjct: 179 RLLKEECEKILGAPLPHLSMGMSGDFEIAIEEGATIVRIGTALFGPRARAT 229
>gi|149915694|ref|ZP_01904220.1| hypothetical protein RAZWK3B_07052 [Roseobacter sp. AzwK-3b]
gi|149810586|gb|EDM70429.1| hypothetical protein RAZWK3B_07052 [Roseobacter sp. AzwK-3b]
Length = 217
Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats.
Identities = 88/215 (40%), Positives = 125/215 (58%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +I + A R + SV+L+AVSK+ ++++ L G F EN++QEA KW
Sbjct: 3 LEDIRNRIHKAERAAGRVEGSVTLIAVSKVQPNERVEAVLEMGHRCFGENRVQEAAGKWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+ + + L IG LQ+NK + LF I +V R K AS ++ ++ +++Q
Sbjct: 63 EFRERFQGIDLHLIGPLQTNKARQAFDLFQTIHSVDRPKLASTIARIAQEEGHCPDIFLQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P F+ C+ L V+GLMCIPP P HF LL++IA
Sbjct: 123 VNTGEEDQKAGVLPADADKFINDCKGMD-LPVQGLMCIPPVDEEPSLHFALLAKIAERNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 182 LQGLSMGMSGDFEEAIALGATHVRVGSAIFGARDY 216
>gi|330831214|ref|YP_004394166.1| alanine racemase domain-containing protein [Aeromonas veronii B565]
gi|328806350|gb|AEB51549.1| Alanine racemase domain protein [Aeromonas veronii B565]
Length = 233
Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats.
Identities = 75/230 (32%), Positives = 107/230 (46%), Gaps = 11/230 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L K++I +A A R + L+AVSK + I A + GQ F E+ QEA
Sbjct: 4 IAQHLFQVKERIAQAAERASRNLQQIRLLAVSKTKPVEAIMAAHAAGQRCFGESYAQEAA 63
Query: 63 KKWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K LR++ D++ FIG LQSNK + FD +++V R+K L+ +
Sbjct: 64 AKIDTLRQQPEYSDIEWHFIGPLQSNKSKLVAERFDWVQSVDRDKLIDRLNNQRPTTMAP 123
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
L V +Q+N E KSG + L +L + GLM IP +
Sbjct: 124 LNVCLQINISGESSKSGTSEQEIFRLAELVSHSERLVLRGLMAIPEHTSDESVLAAQMTR 183
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + E + LSMGMT D ELAIA G+T VR+G+ IFG R
Sbjct: 184 MQTLFTELARQYPTVDTLSMGMTEDLELAIAHGSTMVRVGTAIFGARDYS 233
>gi|221069576|ref|ZP_03545681.1| alanine racemase domain protein [Comamonas testosteroni KF-1]
gi|220714599|gb|EED69967.1| alanine racemase domain protein [Comamonas testosteroni KF-1]
Length = 268
Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats.
Identities = 72/226 (31%), Positives = 104/226 (46%), Gaps = 11/226 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ L + +I + R SV L+ VSK +R+A + G ENK+QEA
Sbjct: 25 RSNLATVQARIAAACQRVGRDPASVRLLPVSKTKPQASLRLAYAAGCRWLGENKVQEALG 84
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
KW L+ D++ IG LQ+NK + + + + A L + + R L V+
Sbjct: 85 KWESLQDLTDLRWSVIGHLQTNKARLVARFASEFQALDSLRVAEALDRRLQAEGRSLDVF 144
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVNT E K G+ P DF+ L V GLM + + F LL ++
Sbjct: 145 VQVNTSGEASKYGLSPEAVPDFIRQLPVFSALRVRGLMTLALFSAEAERVRRCFILLRQL 204
Query: 181 ARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + L LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 205 RDQLRQGAPAGMALDALSMGMSGDFEIAIEEGATVVRVGQAIFGAR 250
>gi|312127594|ref|YP_003992468.1| alanine racemase domain-containing protein [Caldicellulosiruptor
hydrothermalis 108]
gi|311777613|gb|ADQ07099.1| alanine racemase domain protein [Caldicellulosiruptor
hydrothermalis 108]
Length = 233
Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 116/231 (50%), Gaps = 14/231 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L ++ ++IE + I A R VSL+ +K VD + I++A G IF EN++QE
Sbjct: 6 TLKKNIEDVMERIERACIKAGRKPGEVSLLGATKGVDVETIKLANQFGLKIFGENRVQEF 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ L ++ FIG LQ+NK+ I +I ++ + L K +
Sbjct: 66 LPKFQELP---YLEWHFIGRLQTNKIKYIYDKISLIHSIDSPQQIDELEKRCAKAGKMCS 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V I++N G E K GI P + + R + ++G M IPP + + +F +
Sbjct: 123 VLIEINIGGEESKGGINPEKVDHLIEKIRNCPHIILKGFMTIPPIEDDEMKLRGYFRKMK 182
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
EI + K + LSMGM+ DFE+AI GAT VRIG+ IFGERP +
Sbjct: 183 EIFEKYKKLNYNNVNIEVLSMGMSGDFEVAIEEGATLVRIGTKIFGERPKK 233
>gi|325981756|ref|YP_004294158.1| hypothetical protein NAL212_1086 [Nitrosomonas sp. AL212]
gi|325531275|gb|ADZ25996.1| protein of unknown function UPF0001 [Nitrosomonas sp. AL212]
Length = 249
Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats.
Identities = 74/229 (32%), Positives = 116/229 (50%), Gaps = 12/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ N L KQ+I ++ A R SV L+ V+K V ++++R+A + G ENK+QEA
Sbjct: 11 DIQNNLTTVKQRIVDACKKAGRDPASVRLLPVTKTVPAERLRIAYAAGCHEMGENKIQEA 70
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K L +++ IG LQ+NK + + + + K A L + + R +
Sbjct: 71 REKSEVLSD-LNIKWAVIGHLQTNKAKYLARFANEFQALDSLKVAEELDKRLQNEGRAID 129
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
VY+QVN+ E K G+ P +DFV L ++GLM + + + F +
Sbjct: 130 VYVQVNSSGEASKFGLPPEDVRDFVQKLPNYSSLRIKGLMTLAIFSSDHDRVRECFVKMR 189
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
EI + +LSMGM+ D+ELAI GAT VR+G IFG+RP
Sbjct: 190 EIQAMLRQEAPAGLSFDELSMGMSGDYELAIEEGATVVRVGQAIFGKRP 238
>gi|85375194|ref|YP_459256.1| hypothetical protein ELI_11835 [Erythrobacter litoralis HTCC2594]
gi|84788277|gb|ABC64459.1| hypothetical protein ELI_11835 [Erythrobacter litoralis HTCC2594]
Length = 220
Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats.
Identities = 87/213 (40%), Positives = 124/213 (58%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +I + +A+R +D V+L+AVSK + I L G +F EN++QE K+KW
Sbjct: 8 LEETEARIARACTIAQRDRDEVTLIAVSKTHPVEAIEPLLEQGHRVFGENRVQEVKEKWP 67
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ + DV+L IG LQSNK + V+LFD I ++ R L M K + +P ++Q
Sbjct: 68 ALREAYSDVELHLIGQLQSNKAEDAVALFDCIHSLDRPSLVKALGKAMEKAGKQVPCFLQ 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VN G E QK G + + R+ + V GLM IPP P P F LL ++ARE +
Sbjct: 128 VNIGDEDQKGGCPIGEVPAMLERAREA-GIPVVGLMSIPPFDIEPAPFFALLDKLARENE 186
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L SMGM+ DFE AI GAT VR+G+ +FG+R
Sbjct: 187 LEARSMGMSSDFETAIMLGATHVRVGTALFGDR 219
>gi|254421067|ref|ZP_05034791.1| conserved hypothetical protein TIGR00044 [Brevundimonas sp. BAL3]
gi|196187244|gb|EDX82220.1| conserved hypothetical protein TIGR00044 [Brevundimonas sp. BAL3]
Length = 232
Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats.
Identities = 94/217 (43%), Positives = 132/217 (60%), Gaps = 1/217 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ + +I+ + A R +V+L AVSK + I L+ GQ +F EN++QEA+
Sbjct: 13 IAERVAGVRARIDAACHAAGRDPAAVTLTAVSKTQPDEAIDAILATGQRVFGENRVQEAQ 72
Query: 63 KKWIP-LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+W L ++LR IG LQ+NK + V LFDVIET+ REK A L+ K+ R
Sbjct: 73 ARWTERLSGLDGLELRLIGPLQTNKAEDAVVLFDVIETLDREKLARALAEAAQKRGRSPR 132
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V +QVNTG E QK+G++P + R+ Y L VEGLMCIPPA +PHF LL ++A
Sbjct: 133 VLVQVNTGAEPQKAGVLPEAAAALIDTARRTYGLTVEGLMCIPPADQAAEPHFALLRDMA 192
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ LSMGM+ D+E AI GAT VR+G+ +FGER
Sbjct: 193 ERNGLSVLSMGMSGDYETAIRCGATHVRVGTALFGER 229
>gi|332970489|gb|EGK09479.1| YggS family pyridoxal phosphate enzyme [Psychrobacter sp.
1501(2011)]
Length = 232
Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats.
Identities = 77/233 (33%), Positives = 115/233 (49%), Gaps = 19/233 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + Q Q+I+ + ++R SV+L+AVSK ++ I GQV F EN LQEA
Sbjct: 4 TLLQRWQEVTQQIQKACTDSERD--SVTLLAVSKTKPAEMITELAQAGQVHFGENYLQEA 61
Query: 62 KKKWIPL-------RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
+K + D+ +IG +Q NK +I FD + TV R+ A L+ +
Sbjct: 62 MEKMAEIKELVASIPATKDIVWHYIGHIQRNKTRDIAENFDWVHTVERDIIAKRLNEQRP 121
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
+ L V +QVN E KSG +P++ + + + LN+ GLM IP G+ F
Sbjct: 122 QALGKLNVLVQVNIDNEDSKSGCLPSELESLITTIKSYDNLNLRGLMIIPSKEGS--DAF 179
Query: 175 YLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ E + LSMGM+ D + AIA G+T VR+GS IFG R
Sbjct: 180 ERTKKLFDEIQQAHPELTQWDTLSMGMSGDMQQAIAHGSTMVRVGSAIFGARD 232
>gi|313200408|ref|YP_004039066.1| alanine racemase domain-containing protein [Methylovorus sp. MP688]
gi|312439724|gb|ADQ83830.1| alanine racemase domain protein [Methylovorus sp. MP688]
Length = 233
Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats.
Identities = 82/231 (35%), Positives = 115/231 (49%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + +LQ + +I SA A R ++L+AVSK ++ IR + GQ F EN LQ
Sbjct: 1 MSAITERLQAVQARICQSATAAGRDPQEITLLAVSKAQNADAIRDVWAAGQQRFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L+ ++ FIG +QSNK I F + V R K A L+ +
Sbjct: 61 EALNKQSLLQDLP-IEWHFIGPIQSNKTQPIAQHFSWVHGVDRLKIAERLNAARPAELPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYL 176
L + +QVN +E KSGI P + Q +L + GLM IP P M + F +
Sbjct: 120 LQICLQVNVSHEESKSGIAPEEAYALASAITQLPRLQLRGLMAIPAPTPDMELQRAQFRM 179
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + + L LS+GM+ DF +AI GAT VR+GS IFG RP +
Sbjct: 180 VRALYDALRQQGIALDTLSIGMSEDFPVAIGEGATIVRVGSAIFGPRPAKA 230
>gi|254510435|ref|ZP_05122502.1| pyridoxal phosphate enzyme, YggS family [Rhodobacteraceae bacterium
KLH11]
gi|221534146|gb|EEE37134.1| pyridoxal phosphate enzyme, YggS family [Rhodobacteraceae bacterium
KLH11]
Length = 219
Score = 272 bits (697), Expect = 2e-71, Method: Composition-based stats.
Identities = 94/213 (44%), Positives = 125/213 (58%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ +I + A R K +V L+AVSK+ +++++ L G F EN++QEA KW
Sbjct: 3 LQEITDRIATAETAAGRSKGAVKLIAVSKVQPNERVKAVLEQGHRCFGENRVQEAAGKWP 62
Query: 67 PLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R++ DV L IG LQ+NK + + L D I +V R K A L+ + ++IQ
Sbjct: 63 TFREDFPDVDLHLIGPLQTNKARQAMELCDAIHSVDRPKLAKTLARLAQEIGGCPDLFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI+P+ F+ CR L V GLMC+PP P HF LL++IA
Sbjct: 123 VNTGEEQQKAGILPSDADAFIKECRGLD-LPVRGLMCLPPVEEEPALHFALLAKIAERNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 182 LDGLSMGMSGDFETAIALGATHVRVGSAIFGER 214
>gi|29346742|ref|NP_810245.1| hypothetical protein BT_1332 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29338639|gb|AAO76439.1| putative racemase [Bacteroides thetaiotaomicron VPI-5482]
Length = 224
Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats.
Identities = 72/236 (30%), Positives = 116/236 (49%), Gaps = 26/236 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L+ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MSIADNLKQVLAEL----------PQGVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D++ FIG LQ+NK+ ++ ++I + K + ++ + K R +
Sbjct: 51 MTAKYETLPK--DIEWHFIGHLQTNKIKYMIPYVEMIHGIDTYKLLAEVNKQAAKAGRIV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKP---HFY 175
IQ++ E K G P + KD + ++ + + GLM + + + F
Sbjct: 109 NCLIQIHVAQEETKFGFSPEECKDMLHAGEWKELSHIRICGLMGMASNTDDVEQINREFC 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
LL+ + +E K +LSMGM+ D+ AIA+G+T VR+GS IFGER T
Sbjct: 169 LLNRLFQEIKANWFADSDTFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGERNYNT 224
>gi|148251792|ref|YP_001236377.1| hypothetical protein BBta_0174 [Bradyrhizobium sp. BTAi1]
gi|146403965|gb|ABQ32471.1| putative exported protein of unknown function [Bradyrhizobium sp.
BTAi1]
Length = 228
Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats.
Identities = 97/214 (45%), Positives = 128/214 (59%), Gaps = 1/214 (0%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +Q+I + AKR + SV+L+AVSK + I ++ GQ +F EN++QEAK KW
Sbjct: 15 ALTAVEQEILRACRDAKRERASVTLIAVSKTFAADAIEPVIAAGQRVFGENRVQEAKGKW 74
Query: 66 IPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
L + L IG LQSNK E V+LFD I +V R + L+ E+ Q+R +++
Sbjct: 75 PALMAAHPGLSLHLIGPLQSNKAKEAVALFDAIHSVDRPSLCAALAKEIAAQNRHPQLFV 134
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
Q+NTG E QK+GI P + FV CR+ Y L + GLMCIPP P PHF L ++IA
Sbjct: 135 QINTGEEPQKAGIAPGEADAFVAACRKDYGLEISGLMCIPPVDEAPGPHFALTAKIAARN 194
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DF AI GAT VR+GS IFG R
Sbjct: 195 GLANLSMGMSADFATAIQFGATHVRVGSAIFGHR 228
>gi|308799451|ref|XP_003074506.1| alanine racemase family protein (ISS) [Ostreococcus tauri]
gi|116000677|emb|CAL50357.1| alanine racemase family protein (ISS) [Ostreococcus tauri]
Length = 236
Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats.
Identities = 77/236 (32%), Positives = 109/236 (46%), Gaps = 16/236 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + Q++ ++ + R SV +VAVSK S ++ G F EN +QE
Sbjct: 1 MSVSRNIADVLQRVASACARSGRDGGSVRVVAVSKTKPSDAVKACYDAGHRSFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMI-KQ 116
K L DV+ F+G LQSNK + V ++ET+ EK A+ ++ + ++
Sbjct: 61 LIDKAPTLPD--DVRWHFVGHLQSNKAKALLEGVPSLAMLETIDSEKLANKVNNAVPERR 118
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPH-F 174
+ L V +QVNT E K G P +L GLM I +P F
Sbjct: 119 ANALDVMVQVNTSGEESKHGCEPADAVKLARHIVDNCPRLRFAGLMTIGMPDYTSRPECF 178
Query: 175 YLLSEIAR----ECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L E R E L +LSMGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 179 ETLVECRRQVCAELGLDESACELSMGMSGDFEQAIEMGSTNVRVGSTIFGAREYPN 234
>gi|254784476|ref|YP_003071904.1| pyridoxal phosphate enzyme, YggS family [Teredinibacter turnerae
T7901]
gi|237687467|gb|ACR14731.1| pyridoxal phosphate enzyme, YggS family [Teredinibacter turnerae
T7901]
Length = 228
Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats.
Identities = 74/224 (33%), Positives = 109/224 (48%), Gaps = 9/224 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++ +I+N+A A R +++L+AVSK + I+ A G F EN LQEA
Sbjct: 4 IQDRITQVNIRIKNAASNAGRNPQAITLLAVSKRQPNALIQAAYDAGLRDFGENYLQEAV 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + + FIG +QSNK I F + +V R K A LS + L +
Sbjct: 64 EKIAVL-AMPEARWHFIGPIQSNKTRAIAEHFQWVHSVDRLKIAQRLSEQRSPALPPLQI 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH-FYLLSEIA 181
+QVN E KSG+ + + + + L + GLM IP F L +
Sbjct: 123 CLQVNIDNEDTKSGVNVTELETLALAVAELPHLQLRGLMTIPATQYTADNSPFVRLQTLF 182
Query: 182 RECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K + LSMGM+ D E AIA+G+T VRIG+ +FGER
Sbjct: 183 ERLKKHPQLANMDTLSMGMSGDMEDAIAAGSTQVRIGTALFGER 226
>gi|156932607|ref|YP_001436523.1| hypothetical protein ESA_00389 [Cronobacter sakazakii ATCC BAA-894]
gi|156530861|gb|ABU75687.1| hypothetical protein ESA_00389 [Cronobacter sakazakii ATCC BAA-894]
Length = 235
Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats.
Identities = 78/225 (34%), Positives = 108/225 (48%), Gaps = 10/225 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +QKI +A R + V+L+AVSK + I A++ GQ F EN +QE +K
Sbjct: 7 NLTQVRQKISAAAQRCGRAPEEVTLLAVSKTKPASAIAEAIAAGQREFGENYVQEGVEKI 66
Query: 66 IPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
+ R + FIG LQSNK + FD TV R + A+ L+ + + L V
Sbjct: 67 LHFRDAGVDGLTWHFIGPLQSNKSRLVAEHFDWCHTVDRLRIATRLNEQRPDEMTPLNVL 126
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--- 180
IQVN E KSGI ++ +L + GLM IP F + E+
Sbjct: 127 IQVNISDEQSKSGIALSELDALAEQIAALPRLRLRGLMAIPAPEKEYARQFAVACEMAAA 186
Query: 181 -----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 187 FTALKARYPTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|294671422|ref|ZP_06736271.1| hypothetical protein NEIELOOT_03130 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291306899|gb|EFE48142.1| hypothetical protein NEIELOOT_03130 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 231
Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats.
Identities = 76/228 (33%), Positives = 105/228 (46%), Gaps = 8/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + I +A A RP +SV LVAV K + IR + GQ F EN +QE
Sbjct: 3 TLQQNYRNVCSNIARAAAEAGRPSESVRLVAVGKTFPAGDIREVYAAGQRDFGENYIQEW 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L D+ IG +QSNK + + T+ R KTA LS++ + L
Sbjct: 63 YEKTEDLADLSDIVWHIIGDVQSNKTKFVAERAHWVHTIGRLKTARRLSVQRPYKMPPLQ 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V I+VN E K G+ P++ + L + GLMC+ A + F +
Sbjct: 123 VCIEVNIAGEAAKHGVAPDEAVALACEVAKLPNLKMRGLMCVAKADAGEAELREAFGRMR 182
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ E LSMGM+ D E+A+A GAT VRIGS IFG R
Sbjct: 183 ALLAELNAAGVVADVLSMGMSGDMEIAVACGATHVRIGSAIFGRRDYS 230
>gi|283788527|ref|YP_003368392.1| amino acid racemase [Citrobacter rodentium ICC168]
gi|282951981|emb|CBG91708.1| putative amino acid racemase [Citrobacter rodentium ICC168]
Length = 234
Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats.
Identities = 75/229 (32%), Positives = 111/229 (48%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHSLAQIRDKISAAASHCGRAPEEVTLLAVSKTKPASAIEEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K +++ +Q FIG LQSNK + FD T+ R + A+ LS + Q
Sbjct: 63 VEKIRHFQEKGSEGLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIAARLSEQRPAQLPP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + L + GLM IP + F + +
Sbjct: 123 LNVLIQINISDENSKSGIALAELEQLAEEVAALPNLRLRGLMAIPAPESDYVRQFEVARQ 182
Query: 180 IA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A R + LS+GM+ D + AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFAGLKTRYPGVDTLSLGMSDDMDAAIAAGSTMVRIGTAIFGARNY 231
>gi|255067482|ref|ZP_05319337.1| pyridoxal phosphate enzyme, YggS family [Neisseria sicca ATCC
29256]
gi|255048277|gb|EET43741.1| pyridoxal phosphate enzyme, YggS family [Neisseria sicca ATCC
29256]
Length = 235
Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats.
Identities = 74/227 (32%), Positives = 105/227 (46%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L ++I + A R V L+AVSK S IR + GQ F EN +Q
Sbjct: 1 MSVLQQNYAEVCRRIAEAEQKAGRQAGEVGLIAVSKTFPSDDIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E +K L D+ IG +QSNK + + T+ R KTA LS + +
Sbjct: 61 EWYEKTETLADLPDIVWHVIGDVQSNKTKFVAERAHWVHTIGRLKTARRLSEQRPSEMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P++ + + + V GLMC+ A + + F
Sbjct: 121 LQVCIEVNIAGEEAKHGVAPDEAVALAVEVAKLPNVVVRGLMCVAKADSDDEELRVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + LSMGM+ D +A+A GAT VRIGS IFG R
Sbjct: 181 MQKLLADLNAAGVHADVLSMGMSDDMPVAVACGATHVRIGSAIFGRR 227
>gi|50122548|ref|YP_051715.1| putative alanine racemase [Pectobacterium atrosepticum SCRI1043]
gi|49613074|emb|CAG76525.1| putative alanine racemase [Pectobacterium atrosepticum SCRI1043]
Length = 237
Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats.
Identities = 68/218 (31%), Positives = 102/218 (46%), Gaps = 11/218 (5%)
Query: 16 NSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE---W 72
+A R + ++L+AVSK I A++ GQ F EN +QE +K ++
Sbjct: 17 AAATHCARAPEEITLLAVSKTKPVSAIEEAIAAGQRAFGENYVQEGVEKIHYFQENQPNT 76
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
++ FIG LQSNK + FD TV R + A LS + L V +Q+N E
Sbjct: 77 PLEWHFIGPLQSNKSRLVAENFDWFHTVDRLRIAQRLSEQRPTTLPPLNVLLQINISNEP 136
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIAR-----EC 184
KSGIM ++ + L + GLM IP + + F ++ + +
Sbjct: 137 SKSGIMVDELTELAASVAALPNLRLRGLMAIPAPETDHERQLAVFKQMTALFQTLSVNYP 196
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ LSMGMT D AI +G+T VRIG+ +FG R +
Sbjct: 197 HIDTLSMGMTDDMRAAITAGSTLVRIGTAVFGARDYSS 234
>gi|163869197|ref|YP_001610449.1| hypothetical protein Btr_2479 [Bartonella tribocorum CIP 105476]
gi|161018896|emb|CAK02454.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
Length = 235
Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats.
Identities = 103/217 (47%), Positives = 145/217 (66%), Gaps = 1/217 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L ++ I +RP++ V L+AVSK V + IR L GQ +FAEN++QEA +K
Sbjct: 19 EALHNLQKDIAALCQELQRPREEVELIAVSKTVSIEDIRPLLQAGQSLFAENRVQEAAQK 78
Query: 65 WIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W+ LR+++ +++L IG LQSNK +E V +FDVI+TV REK A +L+ EM KQ R +P Y
Sbjct: 79 WLGLRQQFENIKLHLIGPLQSNKAAEAVKIFDVIQTVDREKIAKILAEEMQKQKRHIPCY 138
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVN G E QKSGI P + FV C+ Y L++ GLM IPP NP P+F LL+++A++
Sbjct: 139 VQVNIGLEPQKSGIAPQEVIPFVSQCKNNYGLDIIGLMAIPPVDENPGPYFALLAKLAKQ 198
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L KLSMGM+ DF+ A+ G+ +RIGS +FG+RP
Sbjct: 199 AGLPKLSMGMSNDFKTALQFGSNVLRIGSALFGKRPV 235
>gi|312131524|ref|YP_003998864.1| alanine racemase domain protein [Leadbetterella byssophila DSM
17132]
gi|311908070|gb|ADQ18511.1| alanine racemase domain protein [Leadbetterella byssophila DSM
17132]
Length = 217
Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 111/228 (48%), Gaps = 22/228 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++L+ +Q+I SV L+AVSK + A +CGQ F EN +QE
Sbjct: 1 MSISDRLRALRQEI----------PPSVDLIAVSKFKPVADLEEAYACGQRDFGENYVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L K DV+ FIG LQ+NKV I +I +V K + + + R +
Sbjct: 51 LVEKESALPK--DVRWHFIGHLQTNKVKYIAPFVHLIHSVDSLKLLKEIQKQGASKGRII 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGN---PKPHFY 175
V +Q + E K+G + K+ + + + VEGLM + + + F
Sbjct: 109 SVLLQAHIAEEESKTGFDIEELKEILQSGTLQTFPNVKVEGLMGMGTFTEDADQTRREFK 168
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++EI E K L LSMGM+ D+++A+ G+ VRIGS IFG R
Sbjct: 169 HMAEIFEEAKQYEPGLKILSMGMSGDWKIAVEEGSNMVRIGSTIFGSR 216
>gi|260881737|ref|ZP_05405125.2| pyridoxal phosphate enzyme, YggS family [Mitsuokella multacida DSM
20544]
gi|260848290|gb|EEX68297.1| pyridoxal phosphate enzyme, YggS family [Mitsuokella multacida DSM
20544]
Length = 230
Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats.
Identities = 78/231 (33%), Positives = 113/231 (48%), Gaps = 15/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDS--VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ L +Q I+ + R V LVAV+K D + +R A+ G EN++QE
Sbjct: 2 IAENLHQVEQHIKEAMARRTRVPKDAPVKLVAVTKNHDVEAMREAIDAGATDIGENRIQE 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
AK K+ L + DV IG LQ+NK + V F +I +V E A L E K +
Sbjct: 62 AKSKFDIL--DRDVTWHLIGHLQTNKAKQAVKYFSLIHSVDSEHLARALDKEAGKIGKCQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V +QVN E KSGI + + L L + GLMCI P + +P F+ +
Sbjct: 120 DVLVQVNLAKEDSKSGIYKEDLRPLLDLVDALPNLRLRGLMCIAPNYADVEACRPLFHEM 179
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
EI ++ K ++ LSMGMT D+++A+ GA VR+G+ IFG R
Sbjct: 180 YEIFQQVKEIPFKTANISYLSMGMTHDYQIAVEEGANIVRVGTAIFGPRQY 230
>gi|92115169|ref|YP_575097.1| hypothetical protein Csal_3054 [Chromohalobacter salexigens DSM
3043]
gi|91798259|gb|ABE60398.1| Protein of unknown function UPF0001 [Chromohalobacter salexigens
DSM 3043]
Length = 235
Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats.
Identities = 73/231 (31%), Positives = 105/231 (45%), Gaps = 10/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L+ + ++ + A R S L+AVSK + +R A GQ F EN +QEA
Sbjct: 5 NIVESLEDARNRLRTALTNAGRDPASAHLLAVSKTQPAASVRQAFEAGQREFGENYVQEA 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + FIG LQSNK + F + T+ RE+ A L+ + L
Sbjct: 65 LDKQAALTDLDAIVWHFIGPLQSNKTRAVAEHFQWVHTLDRERIARRLAAQRPPALGPLD 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
V +QVN E KSG+ P + QL + GLM +P + F L
Sbjct: 125 VCLQVNVSGEASKSGVAPADLPALADVVATLPQLRLRGLMTLPAPSDELATQRRPFAELR 184
Query: 179 EIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
E+ + L LSMGM+ D E A+ GAT VR+G+ IFG+R +
Sbjct: 185 ELLASLRQRHPQAPLDTLSMGMSGDLEAAVLEGATWVRLGTAIFGQRAPRA 235
>gi|304316673|ref|YP_003851818.1| alanine racemase domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778175|gb|ADL68734.1| alanine racemase domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 233
Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats.
Identities = 72/228 (31%), Positives = 111/228 (48%), Gaps = 12/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ K IE A R D + ++AV+K VD ++I+ A+ G ENK+QE
Sbjct: 1 MDIRLNLEEIKNNIEVHARKVNRNPDDILIMAVTKTVDVERIQEAIDNGITDIGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ + VQ FIG LQ+NKV I+ +I ++ A ++ + +
Sbjct: 61 LIDKYPALKDK--VQFHFIGHLQTNKVKYIIDKVKMIHSLDSIHLAQEINKRAHSNNIVM 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM--GNPKPHFYLLS 178
++VN G E K GI P DF+ + + GLM + P M +P+F +
Sbjct: 119 DCLVEVNIGSEESKYGIDPLNVMDFIKSLESFDNIRIRGLMTVAPFMEPEQVRPYFKKMK 178
Query: 179 EIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ LSMGMT D+ +A+ G+ VRIG+GIFG+R
Sbjct: 179 ELFDCAKSINQKNVDFKYLSMGMTNDYTVAVEEGSNIVRIGTGIFGKR 226
>gi|119475410|ref|ZP_01615763.1| hypothetical protein GP2143_16361 [marine gamma proteobacterium
HTCC2143]
gi|119451613|gb|EAW32846.1| hypothetical protein GP2143_16361 [marine gamma proteobacterium
HTCC2143]
Length = 230
Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats.
Identities = 76/224 (33%), Positives = 107/224 (47%), Gaps = 9/224 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I N+ R ++V+L+AVSK + ++R A++ G EN LQEA
Sbjct: 8 IALNIAKVRDRIRNAEEKYHRKPNTVALMAVSKTRSADEVRQAIAAGITDIGENYLQEAL 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + L DV FIG +QSNK I FD + +V R K A L+ + L V
Sbjct: 68 DKQLHLTD-IDVYWHFIGPIQSNKTRAIAEHFDWVHSVDRLKIALRLNDQRPSGMPPLNV 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSE 179
+QVNT E K+G+ Q + + GLM IP A F +L
Sbjct: 127 CLQVNTSDENSKAGVSLEQLASLAEQVDSLPHIQLRGLMSIPQASDQADEQQAAFAVLHH 186
Query: 180 IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + L LSMGM+ D E AIA G+T VRIG+ IFG R
Sbjct: 187 AFNKLQKTCNDLDTLSMGMSADMEAAIAEGSTVVRIGTDIFGPR 230
>gi|299139440|ref|ZP_07032615.1| alanine racemase domain protein [Acidobacterium sp. MP5ACTX8]
gi|298598709|gb|EFI54872.1| alanine racemase domain protein [Acidobacterium sp. MP5ACTX8]
Length = 229
Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats.
Identities = 77/228 (33%), Positives = 126/228 (55%), Gaps = 8/228 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++ + ++ ++ A R + V+L+AVSKM ++ I A + GQ +F EN++QE
Sbjct: 1 MSIASNIERLRNEVADACARANRRAEDVALMAVSKMHPAEAILEAHAAGQRLFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+ K + + + L IG LQ+NK ++ +F I+ V KTA L+ + L
Sbjct: 61 AQAKSAQIAQLEGLDLHLIGPLQNNKTAKAAEIFHAIDAVDSLKTAERLNSAAQALGKTL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
P+ I+V +E K G+ P + F+ + L +GLM +PP +P +P+F L
Sbjct: 121 PLLIEVKLSHEETKHGLAPEELPAFLDGLQPFSFLKPQGLMTVPPWSDDPETARPYFQHL 180
Query: 178 SEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E LT+LSMGM+ DF +AI G+T+VRIG+ IFG+R
Sbjct: 181 RRLRDENVAQHPNLTQLSMGMSHDFRVAIEEGSTTVRIGTAIFGKRSY 228
>gi|94311869|ref|YP_585079.1| hypothetical protein Rmet_2937 [Cupriavidus metallidurans CH34]
gi|93355721|gb|ABF09810.1| conserved protein of unknown function UPF0001 [Cupriavidus
metallidurans CH34]
Length = 229
Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats.
Identities = 82/228 (35%), Positives = 104/228 (45%), Gaps = 10/228 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ K I +A A R V+L+AVSK V ++R A GQ F EN +Q
Sbjct: 1 MSVIAANLQAVKNDIAAAAQQASRDPSGVTLLAVSKTVSPDRVREAFEAGQPAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E K L + FIG LQSNK + FD + + R K A LS +
Sbjct: 61 EGLDKIAALGDLRSRIAWHFIGPLQSNKTRPVAEQFDWVHAIDRLKIAERLSAQRPADLA 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVN E KSG++P + L + GLM IP + F
Sbjct: 121 PLQVCIQVNISNEDTKSGVLPEEVLALARAVAALPNLRLRGLMAIPAPAADLAAQRVPFA 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + E + + LSMGM+ D AIA GAT VRIG+ IFG R
Sbjct: 181 ALRRLLEELRQSGLDVDTLSMGMSADMPAAIAEGATMVRIGTAIFGAR 228
>gi|237712817|ref|ZP_04543298.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262408826|ref|ZP_06085371.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294648180|ref|ZP_06725720.1| pyridoxal phosphate enzyme, YggS family [Bacteroides ovatus SD CC
2a]
gi|294810758|ref|ZP_06769406.1| pyridoxal phosphate enzyme, YggS family [Bacteroides xylanisolvens
SD CC 1b]
gi|298484090|ref|ZP_07002258.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. D22]
gi|229447145|gb|EEO52936.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262353037|gb|EEZ02132.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292636455|gb|EFF54933.1| pyridoxal phosphate enzyme, YggS family [Bacteroides ovatus SD CC
2a]
gi|294442091|gb|EFG10910.1| pyridoxal phosphate enzyme, YggS family [Bacteroides xylanisolvens
SD CC 1b]
gi|298269771|gb|EFI11364.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. D22]
Length = 222
Score = 271 bits (695), Expect = 3e-71, Method: Composition-based stats.
Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L+ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MSIADNLKQVLAEL----------PQGVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D++ FIG LQ+NK+ ++ +I + K + ++ + +K R +
Sbjct: 51 MTAKYESLPK--DIEWHFIGHLQTNKIKYMIPYVAMIHGIDSYKLLAEVNKQAVKAGRTV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMG---NPKPHFY 175
+Q++ E K G P + K+ + ++ + + GLM + F
Sbjct: 109 NCLLQIHVAQEETKFGFSPEECKEMLNVGEWKELTHVRICGLMGMASNTDCIEQINREFC 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ + E K +LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 169 SLNRLFNEIKTTWFTHSDTFCELSMGMSHDYHEAIAAGSTLVRVGSKIFGERNY 222
>gi|192361248|ref|YP_001980612.1| hypothetical protein CJA_0088 [Cellvibrio japonicus Ueda107]
gi|190687413|gb|ACE85091.1| conserved hypothetical protein TIGR00044 [Cellvibrio japonicus
Ueda107]
Length = 268
Score = 271 bits (695), Expect = 4e-71, Method: Composition-based stats.
Identities = 80/224 (35%), Positives = 111/224 (49%), Gaps = 8/224 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +KL ++I +AILA R +V L+AVSK I A + GQ F EN LQEA
Sbjct: 44 IDDKLAKVTERIHQAAILAGRDPQTVQLIAVSKTQPPAAIAEAYAWGQRRFGENYLQEAL 103
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L D+Q FIG +QSNK I + F + +V R + A L+ + + L +
Sbjct: 104 DKQQALHALDDLQWHFIGPIQSNKTRLIAAHFAWVHSVDRLRIAQRLNDQRPEGLPPLEI 163
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-- 180
IQVN E KSG+ + + + +L + GLM IP A + + S +
Sbjct: 164 CIQVNIDDEDTKSGVNLAELPALALAIQPLKRLRLRGLMAIPVATSDTQQQRASFSRLRL 223
Query: 181 ------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D E AIA GAT VR+G+ IFG R
Sbjct: 224 AVAALNRQGLALDTLSMGMSGDLEAAIAEGATFVRVGTDIFGAR 267
>gi|126731006|ref|ZP_01746814.1| alanine racemase domain protein [Sagittula stellata E-37]
gi|126708308|gb|EBA07366.1| alanine racemase domain protein [Sagittula stellata E-37]
Length = 217
Score = 271 bits (695), Expect = 4e-71, Method: Composition-based stats.
Identities = 92/213 (43%), Positives = 127/213 (59%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + ++E + A R V L+AVSK+ +++ L G +F EN++QEA KW
Sbjct: 3 LNDIRTRVETACKAANRDPAEVKLIAVSKVQPLERVEAVLEEGHRLFGENRVQEAAGKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+ ++ V + IG LQSNK + + LFD I +V R K A+ ++ + + ++IQ
Sbjct: 63 DFRERFEGVDVHLIGPLQSNKARQAMDLFDAIHSVDRPKLANAIARLAQEMGQCPDLFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P + F+ CR L V GLMCIPP P HF LL++IA
Sbjct: 123 VNTGEEDQKAGVLPKEADAFIAECRGLD-LPVAGLMCIPPVEETPSLHFALLAKIAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LT LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 182 LTGLSMGMSADFEEAIALGATHVRVGSAIFGER 214
>gi|125973310|ref|YP_001037220.1| hypothetical protein Cthe_0792 [Clostridium thermocellum ATCC
27405]
gi|256003791|ref|ZP_05428779.1| alanine racemase domain protein [Clostridium thermocellum DSM 2360]
gi|281417513|ref|ZP_06248533.1| alanine racemase domain protein [Clostridium thermocellum JW20]
gi|125713535|gb|ABN52027.1| Protein of unknown function UPF0001 [Clostridium thermocellum ATCC
27405]
gi|255992352|gb|EEU02446.1| alanine racemase domain protein [Clostridium thermocellum DSM 2360]
gi|281408915|gb|EFB39173.1| alanine racemase domain protein [Clostridium thermocellum JW20]
gi|316940457|gb|ADU74491.1| alanine racemase domain protein [Clostridium thermocellum DSM 1313]
Length = 234
Score = 271 bits (695), Expect = 4e-71, Method: Composition-based stats.
Identities = 71/227 (31%), Positives = 107/227 (47%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L ++IE +A + R ++LVAV+K V+ ++I L G V EN++QE
Sbjct: 8 IKRNLYSVMERIEKAAQKSGRSAKDITLVAVTKTVEPERIMKILDEGVVDLGENRVQELT 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KK+ L + IG LQ+NKV IV +I +V R + A + + + V
Sbjct: 68 KKYDILNSRK-CKWHLIGHLQTNKVKYIVDKVSLIHSVDRIELAREIQKRAESVGKTVDV 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
+QVN E K G+ + V + V+GLM + P NP+ F L +
Sbjct: 127 LVQVNVSGEKSKFGVSVDDAYGLVREISFMPNIRVKGLMTMAPYAENPESVRYVFSKLRD 186
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + LSMGM+ DFE+AI GA VRIG+ +FG R
Sbjct: 187 LSIDIGKEKFDNSNMEILSMGMSNDFEIAIEEGANMVRIGTALFGSR 233
>gi|270263058|ref|ZP_06191328.1| hypothetical protein SOD_d00730 [Serratia odorifera 4Rx13]
gi|270042746|gb|EFA15840.1| hypothetical protein SOD_d00730 [Serratia odorifera 4Rx13]
Length = 235
Score = 271 bits (695), Expect = 4e-71, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 104/231 (45%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + +I +A R + ++L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDVRSRIATAAQGCARAPEEITLLAVSKTKPVAAIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + + FIG LQSNK + F TV R + A LS +
Sbjct: 63 VDKVQHFATQPEGATLDWHFIGPLQSNKSRLVAEHFAWCHTVDRLRIAQRLSDQRPAGMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQ+N E KSGI+ + L + GLM IP + + +
Sbjct: 123 PLNVLIQINISDEQSKSGIVLAELPALAEAVAALPNLRLRGLMAIPAPEEDYQRQLAVFG 182
Query: 179 EIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+++ ++ LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 183 QMSDAFLALQQHYPQVDTLSMGMTDDMAAAIAAGSTLVRIGTAIFGARDYS 233
>gi|99079889|ref|YP_612043.1| hypothetical protein TM1040_0048 [Ruegeria sp. TM1040]
gi|99036169|gb|ABF62781.1| Protein of unknown function UPF0001 [Ruegeria sp. TM1040]
Length = 218
Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats.
Identities = 94/223 (42%), Positives = 127/223 (56%), Gaps = 6/223 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL K +I + A R SV L+AVSK+ ++++ L G F EN++QE
Sbjct: 1 MSLSE----IKSRIAAAESAAGRVPGSVELIAVSKVQPNERVEAVLEEGHRCFGENRVQE 56
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW R+++ V L IG LQ+NK + + L +VI +V R K A+ L+ +
Sbjct: 57 AAGKWPQFREKFTGVDLHLIGPLQTNKARQAMELVNVIHSVDRPKLANALARLAQELGHC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++IQVNTG E QK+GI+P FV CR+ L ++GLMCIPP P HF LL++
Sbjct: 117 PDLFIQVNTGEEEQKAGILPQDADGFVAECRKLD-LPIKGLMCIPPVDEEPSLHFALLAK 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+A L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 176 MAERNGLNGLSMGMSGDFESAIALGATHVRVGSAIFGARAYSA 218
>gi|83592477|ref|YP_426229.1| hypothetical protein Rru_A1141 [Rhodospirillum rubrum ATCC 11170]
gi|83575391|gb|ABC21942.1| Protein of unknown function UPF0001 [Rhodospirillum rubrum ATCC
11170]
Length = 271
Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats.
Identities = 72/225 (32%), Positives = 109/225 (48%), Gaps = 9/225 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L + +I ++ R + V L+ V+K V + +R+A + G FAENKLQEA+
Sbjct: 26 AANLLTVRDRIASACRRCGRQPEEVRLLPVTKTVPAPLLRLAFAAGLSDFAENKLQEARD 85
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K + L ++ IG LQ+NKV +V + + A ++ + Q R L V+
Sbjct: 86 KQVELAD-LAIRWSIIGHLQTNKVKYLVRFAAEFHALDSLRLAEEMNRRLDAQGRDLDVF 144
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVNT E K G+ P + FV +L GLM + + + F LL +
Sbjct: 145 VQVNTSGEASKYGLPPAEVIPFVERLADYPRLKPRGLMTLAIFSADTDRVRTCFRLLRAL 204
Query: 181 ARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ +T+LSMGM+ D+E AI GA VR+G IFG RP
Sbjct: 205 RDQTATLHPGMTQLSMGMSGDYEAAIEEGADVVRVGQAIFGPRPT 249
>gi|302879877|ref|YP_003848441.1| alanine racemase domain-containing protein [Gallionella
capsiferriformans ES-2]
gi|302582666|gb|ADL56677.1| alanine racemase domain protein [Gallionella capsiferriformans
ES-2]
Length = 231
Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats.
Identities = 84/228 (36%), Positives = 113/228 (49%), Gaps = 9/228 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + LQ + + +A+LA R D V+L+AVSK + +R A GQ FAE+ LQEA
Sbjct: 4 IASNLQAVRAAMAAAAVLADRTADEVTLLAVSKTFPATAVRSAFQAGQRRFAESYLQEAL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ FIG +QSNK I F + +V R K A LS + L
Sbjct: 64 DKIAAL-DDLGIEWHFIGPVQSNKTRPIAEHFCWVHSVDRLKIAERLSAQRPVSLPPLQC 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+QVN E KSG+ P++ L + GLM +P +P + F L E
Sbjct: 123 CLQVNISDEDSKSGVRPDEVSQLAHEIACLPNLQLRGLMAVPAPTDDPLVQRAAFARLRE 182
Query: 180 IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + K L LSMGM+ DF AIA GAT VRIGS IFGER
Sbjct: 183 LYLQLKSEGLPLDTLSMGMSHDFAAAIAEGATIVRIGSAIFGERNYSA 230
>gi|207724413|ref|YP_002254810.1| predicted enzyme with a tim-barrel fold protein [Ralstonia
solanacearum MolK2]
gi|206589634|emb|CAQ36595.1| predicted enzyme with a tim-barrel fold protein [Ralstonia
solanacearum MolK2]
Length = 226
Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats.
Identities = 101/217 (46%), Positives = 135/217 (62%), Gaps = 1/217 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + + I+++AI + R ++V+LVA SK V+ I+ A+ G +F EN++QEA
Sbjct: 5 LEDNIGRITKAIQHAAIDSGRHANAVTLVAASKTVEPHHIQQAIDLGLTVFGENRVQEAV 64
Query: 63 KKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW LR ++L IG LQSNKV + V LFD IE+V R K A ++ E KQ
Sbjct: 65 TKWPELRSRNTGIELHLIGPLQSNKVRQAVGLFDAIESVDRAKLARAIAEEAEKQGHDPA 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+YIQVN G E QKSG++P + + CR+ YQLNV+GLMCIPPA +P HF L IA
Sbjct: 125 IYIQVNVGKEPQKSGVLPAEAPALIRECREVYQLNVQGLMCIPPAGLDPCAHFACLRSIA 184
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D+ AIA GAT VR+GS IFG R
Sbjct: 185 EDHGLRALSMGMSADYLQAIAQGATHVRVGSSIFGAR 221
>gi|326791371|ref|YP_004309192.1| hypothetical protein Clole_2286 [Clostridium lentocellum DSM 5427]
gi|326542135|gb|ADZ83994.1| protein of unknown function UPF0001 [Clostridium lentocellum DSM
5427]
Length = 229
Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats.
Identities = 72/229 (31%), Positives = 115/229 (50%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L++ +++IE SAI + R + ++L+AVSK I+ A++ G F EN +QE
Sbjct: 1 MKERLEMIRKEIEESAIKSGRKVEDITLIAVSKTYPLASIQEAITLGCKDFGENHVQELV 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + V IG LQ+NKV I+ +I +V R K A + + K+ +
Sbjct: 61 QKMDELNE--SVHWHLIGHLQTNKVKYIIGRTTLIHSVDRLKLAEEIEKQSAKKGYITDI 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
I+VN E K G + + ++ + + V GLM + P + NP +P F L +
Sbjct: 119 LIEVNVAKEASKHGFLVEEVIPIMVELAKMKHIRVRGLMTVAPFVANPEENRPIFRKLYD 178
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGM+ D+++AI GAT VRIG+ IFG R
Sbjct: 179 LSVDIQKQKFDNISSDILSMGMSNDYKIAIEEGATMVRIGTAIFGNRDY 227
>gi|254485880|ref|ZP_05099085.1| conserved hypothetical protein TIGR00044 [Roseobacter sp. GAI101]
gi|214042749|gb|EEB83387.1| conserved hypothetical protein TIGR00044 [Roseobacter sp. GAI101]
Length = 228
Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats.
Identities = 90/213 (42%), Positives = 125/213 (58%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ +I + A R SV+L+AVSK+ +++ L G F EN++QEA+ KW
Sbjct: 14 LEDITTRIAKAEADAGRAPGSVTLIAVSKVQPLARVQAVLEQGHRCFGENRVQEAEGKWP 73
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++++D + L IG LQSNK + LFD I T+ R K A L+ + + ++IQ
Sbjct: 74 DFKQQFDGIDLHLIGPLQSNKARPAMELFDAIHTLDRPKLAKTLARLAQELGQCPDLFIQ 133
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P + F+ C+ L + GLMCIPP HF LL++IA
Sbjct: 134 VNTGEEDQKAGVLPREADTFIKECQDLD-LPIRGLMCIPPVDEEAALHFALLAKIAARNG 192
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 193 LEGLSMGMSSDFEKAIALGATHVRVGSAIFGER 225
>gi|300697292|ref|YP_003747953.1| predicted enzyme with a tim-barrel fold protein [Ralstonia
solanacearum CFBP2957]
gi|299074016|emb|CBJ53553.1| Putative predicted enzyme with a tim-barrel fold protein [Ralstonia
solanacearum CFBP2957]
Length = 226
Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats.
Identities = 102/217 (47%), Positives = 136/217 (62%), Gaps = 1/217 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + + I+++AI + R ++V+LVA SK V+ I+ A+ G +F EN++QEA
Sbjct: 5 LEDNIGRITKAIQHAAIGSGRHANAVTLVAASKTVEPHHIQQAIDLGLTVFGENRVQEAV 64
Query: 63 KKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW LR ++L IG LQSNKV + V LFD IE+V R K A ++ E KQ R
Sbjct: 65 TKWPELRSRNAGIELHLIGPLQSNKVRQAVGLFDAIESVDRAKLARAIAEEAEKQGRNPA 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+YIQVN G E QKSG++P + + CR+ YQLNV+GLMCIPPA +P HF L IA
Sbjct: 125 IYIQVNVGKEPQKSGVLPAEAPALIRECREVYQLNVQGLMCIPPAGLDPCAHFACLRSIA 184
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D+ AIA GAT VR+GS IFG R
Sbjct: 185 EDHGLRALSMGMSADYLQAIAQGATHVRVGSSIFGAR 221
>gi|302847524|ref|XP_002955296.1| hypothetical protein VOLCADRAFT_65697 [Volvox carteri f.
nagariensis]
gi|300259368|gb|EFJ43596.1| hypothetical protein VOLCADRAFT_65697 [Volvox carteri f.
nagariensis]
Length = 250
Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats.
Identities = 81/234 (34%), Positives = 115/234 (49%), Gaps = 18/234 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ LQ +++ ++ A R SV LVAVSK + ++ A GQ +F EN +QE
Sbjct: 6 VSTALQDVLTRMKQASERAGR-TQSVRLVAVSKTKPVEALQEAYDAGQRVFGENYVQEML 64
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF---DVIETVSREKTASLLSLEMIKQSRF 119
K L DVQ FIG LQSNKV +V ++ETV K A L+ + R
Sbjct: 65 DKAPALPS--DVQWHFIGHLQSNKVKAVVENVPNLAMVETVDSTKLADKLNRAVEVAGRT 122
Query: 120 LP--VYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPH-FY 175
P V +QVNT E K G+ P + + +L + GLM I + +P F
Sbjct: 123 QPLAVMVQVNTSGEESKFGVEPGECVALAKHIVQSCPKLRLAGLMTIGMPDYSSRPENFE 182
Query: 176 LLSE----IARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L++ +A E + +LSMGM+ DFE AI G+T++R+GS IFG R
Sbjct: 183 CLADCRMKVAAELGMVPEHLELSMGMSGDFEQAIEMGSTNIRVGSTIFGARDYS 236
>gi|319796099|ref|YP_004157739.1| alanine racemase domain protein [Variovorax paradoxus EPS]
gi|315598562|gb|ADU39628.1| alanine racemase domain protein [Variovorax paradoxus EPS]
Length = 233
Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats.
Identities = 76/235 (32%), Positives = 108/235 (45%), Gaps = 18/235 (7%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ +G+ LQ K +IE + + A R V L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MTMIGDDLQQVKNRIEAACVTAGRDPAGVRLLAVSKTFGADAVRDAHAAGQTAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E K L ++ IG LQSNK + FD + ++ R K A LS +
Sbjct: 61 EGLDKIEALADLRASLEWHCIGPLQSNKTRPVAEQFDWVHSIDRLKIAERLSAQRPAHLA 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V +QVN KSG+ P + L + GLM IP P P F
Sbjct: 121 PLNVCLQVNVDGGANKSGVPPEEAVALARAVAALPHLRLRGLMAIP----EPAPDFAAQR 176
Query: 179 EIARE------------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ L LS+GM+ D E AI++G+T VR+G+ IFG R +
Sbjct: 177 DLCLRAHAVFESIKGAGIALDTLSLGMSADLEAAISAGSTMVRVGTAIFGGRARK 231
>gi|193213296|ref|YP_001999249.1| alanine racemase domain-containing protein [Chlorobaculum parvum
NCIB 8327]
gi|193086773|gb|ACF12049.1| alanine racemase domain protein [Chlorobaculum parvum NCIB 8327]
Length = 229
Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats.
Identities = 74/227 (32%), Positives = 108/227 (47%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L +++I + A R D V+L+AVSK + +R A GQ F E+ +QE
Sbjct: 3 SISSNLAAVREQIAEACRKAGRSVDEVTLIAVSKTKSAAAVRKAWEAGQREFGESYVQEF 62
Query: 62 KKK-WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K P V FIG LQSNKV +IV ++ + + TA LS ++ +
Sbjct: 63 LEKCEAPELSGLPVSWHFIGHLQSNKVRQIVDKVTMVHGIDKVSTAEELSKRAVQHGLNV 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE 179
++VN E K G+ P+ C + + GLM I P + F L E
Sbjct: 123 DFLLEVNVSREGTKYGLGPDSVLQAAEECFALPNVRLRGLMTIASPDPDTARREFSELRE 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L++LSMGM+ DFE AI GAT +RIG+ IFG R
Sbjct: 183 TLDMIRNNAPEPAALSELSMGMSGDFEEAILEGATMIRIGTAIFGWR 229
>gi|168025677|ref|XP_001765360.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683413|gb|EDQ69823.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 242
Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats.
Identities = 76/230 (33%), Positives = 112/230 (48%), Gaps = 16/230 (6%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ Q++ ++ A RP V LVAVSK + ++ G F EN +QE K
Sbjct: 11 QALRNVMQRVSQASERANRPASQVRLVAVSKTKPVELVQEVYDAGHRHFGENYVQELIDK 70
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FL 120
L + D++ FIG LQSNK + V ++E V +K A+ L+ + R L
Sbjct: 71 APQLPQ--DIKWHFIGHLQSNKAKALITSVPNLYMVEGVDSQKVANHLNRAVSGLGRPPL 128
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
V +QVNT E KSG+ P++ D + L GLM I + F+
Sbjct: 129 SVLVQVNTSREESKSGVNPSECVDLAKHLKEECPNLRFSGLMTIGMLGYSSTAEFFKTLV 188
Query: 178 ---SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ +E ++ +LSMGM+ DFELAI G+T+VR+GS IFG R
Sbjct: 189 NCREKVCKELEIPVEECELSMGMSGDFELAIEMGSTNVRVGSTIFGARSY 238
>gi|163796485|ref|ZP_02190445.1| hypothetical protein BAL199_10997 [alpha proteobacterium BAL199]
gi|159178335|gb|EDP62879.1| hypothetical protein BAL199_10997 [alpha proteobacterium BAL199]
Length = 227
Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats.
Identities = 95/195 (48%), Positives = 130/195 (66%), Gaps = 1/195 (0%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE-WDVQLRFIGSLQSN 85
V+L+AV K+ +++ AL+ GQ +F EN++QEA+ KW LR+ DV+L IG LQ+N
Sbjct: 32 EVTLIAVGKVQPVERVEAALAAGQRVFGENRVQEAQGKWPALRERYPDVELHLIGPLQTN 91
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV + V LFD I+TV R K A+ L+ EM KQ R L YIQ+NTG E QK+G++P F
Sbjct: 92 KVKDAVVLFDAIQTVDRPKLAAELAREMAKQGRRLDCYIQINTGEEDQKAGVLPADADAF 151
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA 205
+ CRQ++ L + GLMCIPP +P HF +L EIA+ L+ LSMGM+ D+E A+ GA
Sbjct: 152 IDSCRQEHGLPIVGLMCIPPVADDPALHFAMLREIAKRHGLSGLSMGMSGDYETAVQLGA 211
Query: 206 TSVRIGSGIFGERPC 220
T VR+G+ IFG R
Sbjct: 212 THVRVGTAIFGARDY 226
>gi|84500586|ref|ZP_00998835.1| alanine racemase domain protein [Oceanicola batsensis HTCC2597]
gi|84391539|gb|EAQ03871.1| alanine racemase domain protein [Oceanicola batsensis HTCC2597]
Length = 240
Score = 271 bits (693), Expect = 7e-71, Method: Composition-based stats.
Identities = 93/221 (42%), Positives = 121/221 (54%), Gaps = 6/221 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL +I +A A R V+L+AVSKM + +R L G F EN++QE
Sbjct: 24 MSLTE----ITSRIAKAAEGAGRAPSDVTLIAVSKMQPDENVRSVLEDGHRTFGENRVQE 79
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW R + DV L IG LQ+NK + + L I +V R K A ++
Sbjct: 80 AAGKWPAFRDAFGDVDLHIIGPLQTNKARQAMELAQSIHSVDRPKLARTIARLADDIGSC 139
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++IQVNTG E QK+G++P++T FV R L + GLMCIPP P HF LL++
Sbjct: 140 PDLFIQVNTGEEPQKAGVLPDETDGFVSEVRAL-GLPLRGLMCIPPVEEAPSLHFALLAK 198
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 199 LAARNGLEGLSMGMSGDFEQAIALGATHVRVGSAIFGARAT 239
>gi|163745433|ref|ZP_02152793.1| alanine racemase domain protein [Oceanibulbus indolifex HEL-45]
gi|161382251|gb|EDQ06660.1| alanine racemase domain protein [Oceanibulbus indolifex HEL-45]
Length = 217
Score = 271 bits (693), Expect = 7e-71, Method: Composition-based stats.
Identities = 101/213 (47%), Positives = 131/213 (61%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K +I + A R SV L+AVSK+ ++R L G IF EN++QEA+ KW
Sbjct: 3 LSDIKNRIAKAEADAGRAAGSVKLIAVSKVQPDARVRAVLDEGHRIFGENRVQEAEGKWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+E+ DV+L IG LQSNKV + + L D I TV R K A ++ + R ++IQ
Sbjct: 63 GFREEFADVELHLIGPLQSNKVRQAIELADAIHTVDRPKLAKTIARLAEELGRCPDLFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G+MP + DF+ CR L ++GLMCIPP P HF LL++IA
Sbjct: 123 VNTGEEDQKAGVMPREADDFIAECRALD-LPIKGLMCIPPVDEAPSLHFALLAKIAARND 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 182 LSGLSMGMSGDFEQAIALGATHVRVGSAIFGER 214
>gi|330812364|ref|YP_004356826.1| alanine racemase [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|327380472|gb|AEA71822.1| putative alanine racemase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 228
Score = 270 bits (692), Expect = 7e-71, Method: Composition-based stats.
Identities = 76/224 (33%), Positives = 103/224 (45%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + + +I + A+R + SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIADNIAQVSSRIRAAEQAAQRAEHSVKLLAVSKTKPVQALREAYAAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L + FIG +QSNK I FD + +V R K A LS + L
Sbjct: 63 LGKQLELTDLPLI-WHFIGPIQSNKTRAIAEHFDWVHSVDRLKIAQRLSEQRPADLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ IQVN E KSG P +L + GLM IP + + +
Sbjct: 122 ICIQVNVSGEASKSGCTPADLSALANAISALPRLKLRGLMAIPEPTEDRAAQDAAFAAVE 181
Query: 182 R-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
R L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 RLQASLALPLDTLSMGMSHDLESAIAQGATWVRIGTALFGARDY 225
>gi|295087674|emb|CBK69197.1| pyridoxal phosphate enzyme, YggS family [Bacteroides xylanisolvens
XB1A]
Length = 222
Score = 270 bits (692), Expect = 7e-71, Method: Composition-based stats.
Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L+ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MSIADNLKQVLAEL----------PQGVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D++ FIG LQ+NK+ ++ +I + K + ++ + +K R +
Sbjct: 51 MTAKYESLPK--DIEWHFIGHLQTNKIKYMIPYVAMIHGIDSYKLLAEVNKQAVKAGRTV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMG---NPKPHFY 175
+Q++ E K G P + K+ + ++ + + GLM + F
Sbjct: 109 NCLLQIHVAQEETKFGFSPEECKEMLNVGEWKELTHVRICGLMGMASNTDCIEQINREFC 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ + E K +LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 169 SLNRLFNEIKTTWFTHSDTFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGERNY 222
>gi|315633758|ref|ZP_07889048.1| YggS family pyridoxal phosphate enzyme [Aggregatibacter segnis ATCC
33393]
gi|315477800|gb|EFU68542.1| YggS family pyridoxal phosphate enzyme [Aggregatibacter segnis ATCC
33393]
Length = 228
Score = 270 bits (692), Expect = 8e-71, Method: Composition-based stats.
Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +++I + +V L+AVSK + I A GQ+ F EN +QE
Sbjct: 2 IAQNLAHIQEQITQ-CECHSETQSAVKLLAVSKTKPIEDILTAYEAGQMAFGENYVQEGV 60
Query: 63 KKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K +++ +++ FIG LQSNK + FD ++T+ R K A L+ + L
Sbjct: 61 EKIQFCQQQQIELEWHFIGPLQSNKTRLVAEYFDWMQTLERAKIADRLNEQRPPHKAPLN 120
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
V IQVN E KSG+ P+ L + GLM IP + + F +
Sbjct: 121 VLIQVNISNEASKSGVQPDDILPLAKHVENLPHLRLRGLMAIPEPTDDVVQQEQTFRQMH 180
Query: 179 EIAR-------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ LSMGMT D + AI G+T VR+G+ IFG+R
Sbjct: 181 TLFEGLQQALPHAQIDTLSMGMTDDMQSAIKCGSTMVRVGTAIFGKR 227
>gi|86136920|ref|ZP_01055498.1| alanine racemase domain protein [Roseobacter sp. MED193]
gi|85826244|gb|EAQ46441.1| alanine racemase domain protein [Roseobacter sp. MED193]
Length = 219
Score = 270 bits (692), Expect = 8e-71, Method: Composition-based stats.
Identities = 94/215 (43%), Positives = 127/215 (59%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ K +I + A RP SV+L+AVSK+ + ++ L GQ F EN++QEA KW
Sbjct: 3 LQEIKTRITAAEAAADRPAGSVTLIAVSKVQPNDRVAAVLDEGQRCFGENRVQEALGKWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ + D+ L IG LQ+NK + + LF+ I TV R K A L+ + + ++IQ
Sbjct: 63 DFAETYTDLDLHLIGPLQTNKARQAMELFNAIHTVDRPKLAKTLARLAQELGKCPDLFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
+NTG E QK+GI+P + DF+ CR L V+GLMCIPP HF +L+E+A
Sbjct: 123 INTGAEPQKAGILPAEADDFIAECRTLD-LPVKGLMCIPPVDEVAAKHFTMLAEMATRNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 182 LDGLSMGMSSDFEQAIAHGATHVRVGSAIFGARAY 216
>gi|326334346|ref|ZP_08200560.1| YggS family pyridoxal phosphate enzyme [Capnocytophaga sp. oral
taxon 338 str. F0234]
gi|325693505|gb|EGD35430.1| YggS family pyridoxal phosphate enzyme [Capnocytophaga sp. oral
taxon 338 str. F0234]
Length = 268
Score = 270 bits (692), Expect = 8e-71, Method: Composition-based stats.
Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 13/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +Q +++I + A R V L+ +K V ++IR A + G + AENK+QE
Sbjct: 28 TIEKNIQQVQERINKACETAGRDPKEVKLLLATKTVTPERIRQAFAAGYTLIAENKVQEL 87
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFL 120
K+K+ L+ + FIG LQ+NK+ +I+ +E++ R A L ++ + + +
Sbjct: 88 KEKYEALKSVPHIN-HFIGHLQTNKIKDILKYEVSCVESLDRYDLAEKLHQKLSQIGKQM 146
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
V+IQVNT E K G+ P + V Q L++ GLM I + F LL
Sbjct: 147 DVFIQVNTSAEESKFGVAPENVLELVKQVAQFPTLHIRGLMTIGLFSAEQEKVRKCFQLL 206
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I ++ + +LSMGM+ DFE+AIA GAT VR+G+ IFG+R
Sbjct: 207 KNIQQQIITLNLPDVQPKELSMGMSGDFEIAIAEGATIVRVGTAIFGQR 255
>gi|326796926|ref|YP_004314746.1| hypothetical protein Marme_3700 [Marinomonas mediterranea MMB-1]
gi|326547690|gb|ADZ92910.1| protein of unknown function UPF0001 [Marinomonas mediterranea
MMB-1]
Length = 233
Score = 270 bits (692), Expect = 8e-71, Method: Composition-based stats.
Identities = 79/231 (34%), Positives = 110/231 (47%), Gaps = 9/231 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L K I R +DSV+L+AVSK + I A GQ +F EN +Q
Sbjct: 1 MTQISDNLSRVKHDIHTLETRYNRIEDSVNLLAVSKTKPIEAIIEAYEAGQRLFGENYVQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K+ L+ + FIG +QSNK +I D + TV REK A LS +
Sbjct: 61 EAVSKYGELQNYPGIVWHFIGPIQSNKSRQIAETMDWVHTVDREKIARRLSEQRPISKPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V IQVN E KSGI ++ + V L + + GLM IP + +
Sbjct: 121 LNVLIQVNISQESSKSGIALSELGEMVDLVNSLPNIVLRGLMAIPAPQESEAAQIDVYRP 180
Query: 177 LSEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L+E + LS+GM+ D AIAS ++ VR+G+ IFG R T
Sbjct: 181 LTEAYEALVEAFLHVDTLSIGMSGDLPAAIASKSSLVRVGTSIFGARDYST 231
>gi|302343632|ref|YP_003808161.1| alanine racemase domain protein [Desulfarculus baarsii DSM 2075]
gi|301640245|gb|ADK85567.1| alanine racemase domain protein [Desulfarculus baarsii DSM 2075]
Length = 227
Score = 270 bits (692), Expect = 8e-71, Method: Composition-based stats.
Identities = 81/228 (35%), Positives = 119/228 (52%), Gaps = 12/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L +Q+++ +A A R SV LVAVSK +R A++ GQ+IF EN +QE
Sbjct: 1 MSVAANLAWVRQRMDAAARRAGRDPASVRLVAVSKTRPPDDLRQAMAAGQMIFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K + + FIG+LQSNK + L +V+ +V R K A+ L + + + L
Sbjct: 61 LQAKAAAMGAGP--RWHFIGALQSNKARLVAQLAEVVHSVDRPKLAAALGRQAQELGKEL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V +QV+ E QK+G +T + L + GLM +PP P +P F L
Sbjct: 119 GVLVQVSLAGETQKAGCAAAETPALCQMIAATPGLRLLGLMTMPPFFDEPERARPIFAEL 178
Query: 178 SEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR + +LSMGM+ DFE+AI GAT R+G+ IFG R
Sbjct: 179 RRLARRLAADLPPGAMNELSMGMSGDFEVAIEEGATLARVGTDIFGRR 226
>gi|146301191|ref|YP_001195782.1| alanine racemase domain-containing protein [Flavobacterium
johnsoniae UW101]
gi|146155609|gb|ABQ06463.1| alanine racemase domain protein [Flavobacterium johnsoniae UW101]
Length = 219
Score = 270 bits (692), Expect = 8e-71, Method: Composition-based stats.
Identities = 70/231 (30%), Positives = 105/231 (45%), Gaps = 25/231 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L K + + V+LVAVSK + A GQ IF ENK+QE
Sbjct: 1 MSIQSNLNTIKATL----------PEHVTLVAVSKTKPVSDLMQAYEAGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW + K D+Q IG +QSNKV + +I V K ++ + +K +R +
Sbjct: 51 MTEKWEQMPK--DIQWHMIGHVQSNKVKFMAPYVTLIHGVDSLKLLQEINKQALKNNRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCR--QKYQLNVEGLMCIPPAMGNPK---PHFY 175
+Q+ E K G+ N+ + + + + + GLM + + F
Sbjct: 109 DCLLQIYIAEEESKFGLDENELNELLTSVEFKELKNIRILGLMGMATFTEDQNQIKKEFT 168
Query: 176 LLSEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L I C L +SMGM+ D++LAI G+T VRIGS IFG R
Sbjct: 169 HLKSIFNSIKNLKTENCSLNTISMGMSGDYQLAIECGSTMVRIGSSIFGGR 219
>gi|262369111|ref|ZP_06062440.1| YggS family pyridoxal phosphate enzyme [Acinetobacter johnsonii
SH046]
gi|262316789|gb|EEY97827.1| YggS family pyridoxal phosphate enzyme [Acinetobacter johnsonii
SH046]
Length = 234
Score = 270 bits (692), Expect = 8e-71, Method: Composition-based stats.
Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 12/230 (5%)
Query: 1 MSLGNK-LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M++ Q +I+ + ++ R +SV L+AVSK S+ +R + GQ F EN LQ
Sbjct: 6 MNILQNSRQHVLSQIQQACEISGRDVESVELLAVSKTHPSEVLRDMYAFGQRAFGENYLQ 65
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA +K L+ ++ FIG +Q NK + F + V R A LS + +
Sbjct: 66 EALQKIEALQD-LGIEWHFIGHVQRNKTKHLAEQFAWVHGVDRLIIAERLSAQRLITQPP 124
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + +QVN + K G P++ + V Q + + GLM IP N F
Sbjct: 125 LNLCLQVNIDGQDSKDGCQPDEVAELVKSISQLPHIKLRGLMVIPAP--NNTQAFKAAKV 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + K LSMGM+ D AIA+G+T VR+G+ +FG R
Sbjct: 183 LFDQVKELHVHPEDWDTLSMGMSGDMVDAIAAGSTMVRVGTALFGARDYS 232
>gi|50842463|ref|YP_055690.1| hypothetical protein PPA0978 [Propionibacterium acnes KPA171202]
gi|289425389|ref|ZP_06427166.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
SK187]
gi|289427244|ref|ZP_06428960.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
J165]
gi|295130540|ref|YP_003581203.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
SK137]
gi|50840065|gb|AAT82732.1| conserved protein [Propionibacterium acnes KPA171202]
gi|289154367|gb|EFD03055.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
SK187]
gi|289159713|gb|EFD07901.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
J165]
gi|291377313|gb|ADE01168.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
SK137]
gi|327330199|gb|EGE71948.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL097PA1]
gi|332675380|gb|AEE72196.1| hypothetical protein PAZ_c10210 [Propionibacterium acnes 266]
Length = 238
Score = 270 bits (692), Expect = 8e-71, Method: Composition-based stats.
Identities = 75/235 (31%), Positives = 114/235 (48%), Gaps = 13/235 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L + +I+++ R VSL+ VSK + A G +F ENK+Q+
Sbjct: 1 MSMADNLAAVRTRIDDACRACDRNPGEVSLLPVSKTKPPSMVDEAYRAGYRLFGENKVQD 60
Query: 61 AKKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A K + ++ IG LQ+NK + + + K A L + K+ R
Sbjct: 61 ALAKSELMDANHPGLEWSIIGGLQTNKAKYVARFATEFQALDSLKIAHELDKRLQKEGRQ 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYL 176
L V +QVN+ E QKSGI P + DF L+V GLM + + + F L
Sbjct: 121 LRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRGLMTVALNSSDQRAVADCFDL 180
Query: 177 L----SEIARECK----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER-PCQT 222
+ ++ +E ++LSMGM+ D E+AIA G+T VRIG+ IFG R P +T
Sbjct: 181 VVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQVRIGTDIFGARDPART 235
>gi|260552476|ref|ZP_05825852.1| TIM-barrel fold family protein [Acinetobacter sp. RUH2624]
gi|260405283|gb|EEW98779.1| TIM-barrel fold family protein [Acinetobacter sp. RUH2624]
Length = 235
Score = 270 bits (692), Expect = 8e-71, Method: Composition-based stats.
Identities = 72/225 (32%), Positives = 107/225 (47%), Gaps = 11/225 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q Q+I + A+R ++V L+AVSK S+++R + GQ F EN LQEA
Sbjct: 9 LQDARQHVLQQIRTACEHAQRAPETVQLLAVSKTHPSERLREMYAAGQRAFGENYLQEAL 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L D++ FIG +Q NK + FD + V R A LS + L +
Sbjct: 69 DKIEALHD-LDIEWHFIGHVQRNKTKHLAEEFDWVHGVDRLIIAERLSNQRGDDQAALNI 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+QVN + K G P + + V Q ++ + GLM IP F ++
Sbjct: 128 CLQVNIDGQDTKDGCAPEEVAELVAQISQLPKIKLRGLMVIPAPDNI--AAFADAKKLFD 185
Query: 183 ECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E K LSMGM+ D + AI +G+T VR+G+ +FG+R
Sbjct: 186 EVKEQHAHAQDWDTLSMGMSGDLDAAIVAGSTMVRVGTALFGKRD 230
>gi|326382735|ref|ZP_08204425.1| alanine racemase domain protein [Gordonia neofelifaecis NRRL
B-59395]
gi|326198325|gb|EGD55509.1| alanine racemase domain protein [Gordonia neofelifaecis NRRL
B-59395]
Length = 256
Score = 270 bits (692), Expect = 9e-71, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 106/228 (46%), Gaps = 12/228 (5%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L + +I+ +A A R V L+ VSK V ++I A++ G ENK+QEAK+
Sbjct: 22 RANLAAVRARIDAAATRAGRDPGEVQLLPVSKTVPEERIVNAVAAGCRTLGENKVQEAKR 81
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K L DV IG LQ+NK ++ + + + + A L + R + VY
Sbjct: 82 KHDAL-AHLDVDWSVIGHLQTNKAKDVAAFASEFQALDSLRIAEALDRRLQAAGRGIDVY 140
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVNT E K G+ P + D + L V GLM + + +P F LL +
Sbjct: 141 VQVNTSSEDSKYGLTPAELPDLLRQLPAYSSLRVRGLMTLAVFSDDAERVRPCFQLLRSL 200
Query: 181 ARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGM+ D+ELAI G+T VR+G IFG R
Sbjct: 201 RDRIRDEDPDLIGDGGLSMGMSGDYELAIEEGSTCVRVGQAIFGARAT 248
>gi|46447879|gb|AAS94535.1| conserved hypothetical protein TIGR00044 [Desulfovibrio vulgaris
str. Hildenborough]
Length = 237
Score = 270 bits (692), Expect = 9e-71, Method: Composition-based stats.
Identities = 80/233 (34%), Positives = 116/233 (49%), Gaps = 15/233 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + ++E + A R V+LVAVSK ++ + + GQ F EN +QEA
Sbjct: 5 LAERYAAVRHRLETAVRRAGRAPADVTLVAVSKYHPAEAVAAVAALGQRDFGENYVQEAL 64
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR---- 118
+K L E D+ IG +QS K ++ F +I TV EK A L + +
Sbjct: 65 QKQEALAGE-DILWHCIGHVQSRKAKDVAGRFALIHTVDSEKLAHNLHKALWRPEDDTCP 123
Query: 119 -FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHF 174
V +QVN G E+QKSGI +T Q L + GLMC+PP + +P F
Sbjct: 124 VVQDVLLQVNIGEEVQKSGIDAAETARLAETVLQLPTLRLCGLMCLPPFFDDGEAARPFF 183
Query: 175 YLLSEIARECKLT------KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L ++ + +L+ LSMGM+ DFE A+ GAT VR+G+ IFG RP +
Sbjct: 184 AALRKLRDDLELSLGVPLPHLSMGMSGDFEQAVEEGATIVRVGTDIFGPRPPR 236
>gi|119946661|ref|YP_944341.1| alanine racemase domain-containing protein [Psychromonas ingrahamii
37]
gi|119865265|gb|ABM04742.1| alanine racemase domain protein [Psychromonas ingrahamii 37]
Length = 232
Score = 270 bits (692), Expect = 9e-71, Method: Composition-based stats.
Identities = 75/229 (32%), Positives = 109/229 (47%), Gaps = 12/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ K++ +Q I +A A R D + L+AVSK I+ A G F EN +QE+
Sbjct: 3 NISKKIKNVEQTIIQAAQRAGRNADQIQLLAVSKTKPVALIKEAYLAGLRHFGENYVQES 62
Query: 62 KKKWIPLRKEWDVQ----LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+K ++ + D + FIG LQSNK + FD +++V R K A L+ +
Sbjct: 63 IEKIQQIKLDTDFEQAVFWYFIGPLQSNKTRPVAENFDWVQSVERLKIAQRLNDQRPDHL 122
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
L V +QVN E KSG Q + +L + G+M IP + + F
Sbjct: 123 PKLNVCLQVNISGEQSKSGTTLLQVIELASQVNNLPRLTLRGIMAIPEKTDDQLRLEKQF 182
Query: 175 YLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L I ++ LSMGM+ D E AIA G+T VRIG+ IFG R
Sbjct: 183 NELHNIYLHLQQLYPQVDTLSMGMSGDLEKAIACGSTMVRIGTDIFGSR 231
>gi|116782168|gb|ABK22393.1| unknown [Picea sitchensis]
Length = 244
Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats.
Identities = 79/232 (34%), Positives = 112/232 (48%), Gaps = 18/232 (7%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L+ ++++ +A + R V +VAVSK IR G F EN +QE K
Sbjct: 14 ALRTVLRRVQQAAEKSGRQASQVRVVAVSKTKPVSLIREVYEAGHRYFGENYVQEILDKA 73
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FLP 121
L D+Q FIG LQSNK + V ++E+V K A+ L + R L
Sbjct: 74 PELP--TDIQWHFIGHLQSNKAKAVIAGVPNLYMVESVDSSKVANHLDRAVSSIGRKPLK 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPH-FYLLS- 178
V +QVNT E K G+ P++ + + Q L GLM I + +P F LS
Sbjct: 132 VLVQVNTSGEESKYGVEPSECVELAKHVKFQCPNLEFSGLMTIGMLDYSSRPENFEALSG 191
Query: 179 ---EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGER--PCQ 221
E+ + ++ +LSMGM+ DFE AI G+T+VRIGS IFG R P +
Sbjct: 192 CRIEVCKALGISEDQCELSMGMSGDFEQAIEMGSTNVRIGSTIFGAREYPAK 243
>gi|189347291|ref|YP_001943820.1| alanine racemase domain protein [Chlorobium limicola DSM 245]
gi|189341438|gb|ACD90841.1| alanine racemase domain protein [Chlorobium limicola DSM 245]
Length = 229
Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 117/227 (51%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ L +Q+I ++ + A+R +V+L+AVSK + +IR A GQ+ F E+ +QE
Sbjct: 3 SITENLDAIRQRIAHACLKARRDPATVTLLAVSKTKSASRIREAFDAGQIDFGESYMQEF 62
Query: 62 KKK-WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K PL + ++ FIG LQSNKV I+ +I + + TA LS ++Q+
Sbjct: 63 LDKESDPLLENQPIRWHFIGHLQSNKVRSIIGKVVLIHGIDKLSTAEELSGRAVRQNLQA 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE 179
++VNT E K G+ P + + GLM I P + F LS
Sbjct: 123 DYLLEVNTSGEASKYGLKPEELLRQAPSFFMLPNCTLRGLMTIASPDPALARYEFRSLSR 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K LT+LSMGM++DFE AIA GAT +R+G+ IFG R
Sbjct: 183 LLDDLKKIAPDPSTLTELSMGMSQDFEAAIAEGATLIRVGTAIFGWR 229
>gi|254482735|ref|ZP_05095973.1| conserved hypothetical protein TIGR00044 [marine gamma
proteobacterium HTCC2148]
gi|214037094|gb|EEB77763.1| conserved hypothetical protein TIGR00044 [marine gamma
proteobacterium HTCC2148]
Length = 230
Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats.
Identities = 74/223 (33%), Positives = 110/223 (49%), Gaps = 9/223 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ + +++ + +++P+ + L+AVSK + +R A CG F EN LQEA
Sbjct: 7 KDNIAKLLKRVRIRSQKSQKPESDIILLAVSKTRPADDVRAAYDCGLTQFGENYLQEAVD 66
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K L + FIG +QSNK I F ++++ R K A L+ + L V
Sbjct: 67 KITDLADLP-ITWHFIGPIQSNKTRPIAEHFQWVQSIERPKIARRLNEQRPDSLPPLQVC 125
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVN E KSG+ N+ + L + +L + GLM IP A + + F L +
Sbjct: 126 LQVNISSEQSKSGVSLNELDELATLVDELPRLQLRGLMAIPAATDSESEQRATFAALRKA 185
Query: 181 ARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ KL LSMGM+ D E AIA G+T VRIG+ IFG R
Sbjct: 186 FEQLKLKHPQIDTLSMGMSGDMESAIAEGSTMVRIGTAIFGPR 228
>gi|153808274|ref|ZP_01960942.1| hypothetical protein BACCAC_02562 [Bacteroides caccae ATCC 43185]
gi|149129177|gb|EDM20393.1| hypothetical protein BACCAC_02562 [Bacteroides caccae ATCC 43185]
Length = 222
Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats.
Identities = 72/234 (30%), Positives = 114/234 (48%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MSIAENLKQVLAEL----------PQGVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D++ FIG LQSNK+ ++ +I + K + ++ + +K R +
Sbjct: 51 MTAKYESLPK--DIEWHFIGHLQSNKIKYMIPYVAMIHGIDTYKLLAEVNKQAVKAGRII 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKP---HFY 175
+Q++ E K G P++ KD + ++ + + GLM + N + F
Sbjct: 109 NCLLQIHVAQEETKFGFSPDECKDMLNTGEWKELTHVRICGLMGMASNTDNVEQINREFC 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LL + +E K +LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 169 LLDRLFKEIKTTWFADSDAFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGERNY 222
>gi|71281809|ref|YP_270331.1| hypothetical protein CPS_3663 [Colwellia psychrerythraea 34H]
gi|71147549|gb|AAZ28022.1| conserved hypothetical protein TIGR00044 [Colwellia psychrerythraea
34H]
Length = 239
Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats.
Identities = 74/234 (31%), Positives = 111/234 (47%), Gaps = 18/234 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKR---------PKDSVSLVAVSKMVDSKKIRVALSCGQVI 52
++ + L K +I+ + + R VSL+AVSK + + A GQ
Sbjct: 3 NVKDNLNKVKAQIQQACQQSGRLTPLAELSKQSSPVSLLAVSKTKPTSLVEQAYLAGQHD 62
Query: 53 FAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
F EN LQEA +K L ++ FIG +QSNK +I S F + +V REK A L+
Sbjct: 63 FGENYLQEAVEKIAELANLPEIVWHFIGPIQSNKTKQIASNFSWVHSVDREKIALRLNQH 122
Query: 113 MIK---QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
+ L + +QVN E KSGI Q + +L + GLM +P
Sbjct: 123 LTDDNCHDTPLNICLQVNISNEESKSGISIEQVFSLAKIVDSCDKLTLRGLMAVPEKNA- 181
Query: 170 PKPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
PK + + ++ + K + LS+GM+ D + A+A G+T VRIG+ IFG R
Sbjct: 182 PKACYEQMQQLFTQLKKQYPSVDTLSLGMSNDLDNAVAHGSTMVRIGTAIFGAR 235
>gi|85710049|ref|ZP_01041114.1| hypothetical protein NAP1_14228 [Erythrobacter sp. NAP1]
gi|85688759|gb|EAQ28763.1| hypothetical protein NAP1_14228 [Erythrobacter sp. NAP1]
Length = 228
Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats.
Identities = 84/219 (38%), Positives = 125/219 (57%), Gaps = 6/219 (2%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++L + I A+R V+L+AVSK + KI L G +F EN++QEA++K
Sbjct: 10 SRLAEVESNIARMCKPARREPADVTLIAVSKTHPAHKIEPLLEAGHRVFGENRVQEAQEK 69
Query: 65 WIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W LR+ + V+L IG LQSNK + V LFDVI ++ R L+ M K + +P +
Sbjct: 70 WPQLREAYSGVELHLIGQLQSNKAEDAVELFDVIHSLDRSSLLKALAKAMDKSGKRVPCF 129
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVN G E QK G ++ +F+ R + + GLMC+PPA P F L+++A++
Sbjct: 130 VQVNIGDEDQKGGCPISELPEFLEKVRAA-NVPIAGLMCLPPADTEAAPFFAFLAKLAKD 188
Query: 184 CKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LT LSMGM+ D+E A+ GAT VR+G+ +FG R
Sbjct: 189 NGLTGDEGSLSMGMSGDYETAVQLGATHVRVGTALFGAR 227
>gi|258545057|ref|ZP_05705291.1| alanine racemase domain protein [Cardiobacterium hominis ATCC
15826]
gi|258519677|gb|EEV88536.1| alanine racemase domain protein [Cardiobacterium hominis ATCC
15826]
Length = 254
Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats.
Identities = 71/224 (31%), Positives = 102/224 (45%), Gaps = 8/224 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + +I + R D V L+ VSK V ++++ A G + ENK+QEA
Sbjct: 15 ITANLATIQARINAACAACGREPDEVRLLPVSKTVPAERLHFAYDAGIRLLGENKVQEAY 74
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KW L + IG LQSNKV + + + A L + ++ R L V
Sbjct: 75 DKWQALADLDGLNWAVIGHLQSNKVKYVARFAAEFQALDSLDIAESLDRRLQQEGRSLDV 134
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL----- 177
++QVNT E QK G+ P+ F+ Q L + GLM + +
Sbjct: 135 FVQVNTSDEPQKYGMTPDAADAFIRALPQYNSLRLRGLMTLALFSDDHAAVRRCFVRLRE 194
Query: 178 ---SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +LSMGM+ DFELAIA GAT+VR+G IFG R
Sbjct: 195 LRDRLRETNPAIAELSMGMSGDFELAIAEGATTVRVGQAIFGAR 238
>gi|259417396|ref|ZP_05741315.1| pyridoxal phosphate enzyme, YggS family [Silicibacter sp.
TrichCH4B]
gi|259346302|gb|EEW58116.1| pyridoxal phosphate enzyme, YggS family [Silicibacter sp.
TrichCH4B]
Length = 218
Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats.
Identities = 95/223 (42%), Positives = 130/223 (58%), Gaps = 6/223 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL K +I + A R SV L+AVSK+ ++++ L G +F EN++QE
Sbjct: 1 MSLSE----IKSRIAAAETTAGRAPGSVELIAVSKVQPNERVEAVLEEGHRVFGENRVQE 56
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW R+++ DV L IG LQ+NK + + L + I +V R K A+ L+ +
Sbjct: 57 AAGKWPEFREKFSDVDLHLIGPLQTNKARQAMELVNAIHSVDRPKLATTLARLAQELGHC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++IQVNTG E QK+GI+P + F+ CR L ++GLMCIPP P HF LL++
Sbjct: 117 PELFIQVNTGEEEQKAGILPKDSDGFIQECRALD-LPIKGLMCIPPVDEEPSLHFALLAK 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
IA L+ LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 176 IAERNGLSGLSMGMSGDFESAIALGATHVRVGSAIFGERAYSA 218
>gi|253572881|ref|ZP_04850279.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|298386606|ref|ZP_06996162.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 1_1_14]
gi|251837513|gb|EES65606.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|298260983|gb|EFI03851.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 1_1_14]
Length = 222
Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats.
Identities = 70/234 (29%), Positives = 114/234 (48%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L+ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MSIADNLKQVLAEL----------PQGVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D++ FIG LQ+NK+ ++ +I + K + ++ + K R +
Sbjct: 51 MTAKYETLPK--DIEWHFIGHLQTNKIKYMIPYVAMIHGIDTYKLLTEVNKQAAKAGRIV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKP---HFY 175
+Q++ E K G P + KD + ++ + + GLM + + + F
Sbjct: 109 NCLLQIHVAQEETKFGFSPEECKDMLHAGEWKELSHVRICGLMGMASNTDDVEQINREFC 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LL+ + +E K +LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 169 LLNRLFQEIKANWFADSDTFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGERNY 222
>gi|319955722|ref|YP_004166989.1| hypothetical protein Celal_4250 [Cellulophaga algicola DSM 14237]
gi|319424382|gb|ADV51491.1| protein of unknown function UPF0001 [Cellulophaga algicola DSM
14237]
Length = 216
Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats.
Identities = 69/228 (30%), Positives = 106/228 (46%), Gaps = 22/228 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + LQ K + ++V+LVAVSK + A GQ IF ENK+QE
Sbjct: 1 MSIAHNLQKIKASL----------PENVTLVAVSKTKPIPDLVEAYEVGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW L K D+Q IG +Q+NKV + ++ V K ++ + K R +
Sbjct: 51 MTQKWEELPK--DIQWHMIGHVQTNKVKYMAEYVHLVHGVDSFKLLKEINKQAKKYDRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+Q++ E K G+ + + + +N++GLM + N + F
Sbjct: 109 NCLLQIHIAEEDTKFGLDKEELFAILDSDEFKALNNINIKGLMGMATFTENEDQVRREFK 168
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + L LSMGM+ D+++AI G+T VRIGS IFG R
Sbjct: 169 SLKTLFDLSTIKLDHLDTLSMGMSGDYKMAIEEGSTMVRIGSSIFGSR 216
>gi|144900382|emb|CAM77246.1| Protein of unknown function UPF0001 [Magnetospirillum
gryphiswaldense MSR-1]
Length = 223
Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats.
Identities = 100/214 (46%), Positives = 139/214 (64%), Gaps = 1/214 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L V ++ + A R +V+LVAVSK DS IR L G +F EN++QEAK KW
Sbjct: 8 LAVLCAAMDQAEREAGRATGAVTLVAVSKTHDSDAIRPFLQAGLRVFGENRVQEAKTKWP 67
Query: 67 PLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L+++ +L IG LQ+NKV + V+LFDVIET+ R K A +++ E+ + +Q
Sbjct: 68 ELKQDFPQTELHLIGPLQTNKVRDAVALFDVIETIDRPKLARVVADEIQRLGHGPRCLVQ 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VN G E QK+GI P+QT V LCR++Y L + GLMCIPPA G+P PHF L+E+A++
Sbjct: 128 VNIGREAQKAGIDPDQTAALVDLCRREYGLTISGLMCIPPAEGDPVPHFRRLAELAKDLG 187
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L ++SMGM+ DF AIA GAT +R+GS +FG+R
Sbjct: 188 LAEISMGMSGDFPAAIACGATHIRVGSALFGQRD 221
>gi|255035572|ref|YP_003086193.1| alanine racemase domain-containing protein [Dyadobacter fermentans
DSM 18053]
gi|254948328|gb|ACT93028.1| alanine racemase domain protein [Dyadobacter fermentans DSM 18053]
Length = 246
Score = 270 bits (691), Expect = 1e-70, Method: Composition-based stats.
Identities = 78/228 (34%), Positives = 115/228 (50%), Gaps = 13/228 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +I + + RP DSV L+ +K V + +IR AL GQ + ENK+QE +
Sbjct: 5 VIENLTHILDRIARACEASGRPADSVKLLLATKTVPADRIRHALLAGQTLIGENKVQEIR 64
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ L Q FIG LQ+NK+ +++ I++V R + A L + + R +
Sbjct: 65 DKYEALSDIPH-QTHFIGHLQTNKIKDVLKYNVSCIQSVDRLELAEKLEQRLAFEGRHMD 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
V+IQVNT +E K G+ P D V L+++GLM I + + F LL
Sbjct: 124 VFIQVNTSFEGSKFGVAPEAALDLVRQVACCGHLHIKGLMTIGLFSADNEQVRKCFRLLK 183
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I + + +LSMGM+ D E AI GAT VR+G+ IFGER
Sbjct: 184 SIQSQIISENIPGVGMAELSMGMSGDLETAIQEGATIVRVGTAIFGER 231
>gi|328953088|ref|YP_004370422.1| protein of unknown function UPF0001 [Desulfobacca acetoxidans DSM
11109]
gi|328453412|gb|AEB09241.1| protein of unknown function UPF0001 [Desulfobacca acetoxidans DSM
11109]
Length = 243
Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats.
Identities = 82/228 (35%), Positives = 115/228 (50%), Gaps = 13/228 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ I +A R + LV SK VD +IR A++ G I EN LQEA+
Sbjct: 17 IEAYYHTIMASIAAAARRVGREPAEIRLVGASKTVDLARIREAVAAGLAILGENYLQEAR 76
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + V FIG LQSNK + V LFD+I +V R A L+ ++ V
Sbjct: 77 QKIAVL--DAPVSWHFIGHLQSNKANAAVRLFDLIHSVDRLSLAQALNRAAANINKVQDV 134
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
++VN E KSGI + D + +C L V GLM +PP +P +P+F L
Sbjct: 135 LLEVNLAGEASKSGISSTELPDLIRVCHGLSHLRVRGLMAMPPWFADPEQARPYFKKLRI 194
Query: 180 IARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + +L +LSMGM+ D+E+AI GAT VRIG+ +FG RP
Sbjct: 195 LRDQVQSQGQPGLELVELSMGMSGDYEVAIEEGATLVRIGTALFGSRP 242
>gi|309378575|emb|CBX22847.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 234
Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats.
Identities = 79/227 (34%), Positives = 105/227 (46%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AVSK S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGRKPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLPDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTARRLSEQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
L V I+VN E K G+ P + + + L V GLMC+ A + K F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|192291510|ref|YP_001992115.1| alanine racemase domain protein [Rhodopseudomonas palustris TIE-1]
gi|192285259|gb|ACF01640.1| alanine racemase domain protein [Rhodopseudomonas palustris TIE-1]
Length = 262
Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats.
Identities = 73/225 (32%), Positives = 105/225 (46%), Gaps = 9/225 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L +++I + R V L+ V+K V + +R A + G F+ENKLQEA+
Sbjct: 24 AANLTSVQERIAAACHRCGRSAGEVRLLPVTKTVPAGVLRRAYAAGISEFSENKLQEARD 83
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K L ++ IG LQ+NKV +V + + A L+ + + R L V+
Sbjct: 84 KRDILADLP-IRWSIIGHLQTNKVKYLVRFAAEFHALDSLRLADELNRRLDAEGRDLDVF 142
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEI 180
+QVNT E K G+ P F+ +L GLM + + F LL ++
Sbjct: 143 VQVNTSGEASKYGLAPCDLVPFIERLSDYPRLKPRGLMTLAIFSAETERVRGCFRLLRDL 202
Query: 181 AR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LT+LSMGM+ DFE AI GAT VR+G IFG RP
Sbjct: 203 RDRAIRVHPDLTELSMGMSGDFEFAIEEGATVVRVGQAIFGARPT 247
>gi|134093571|ref|YP_001098646.1| hypothetical protein HEAR0290 [Herminiimonas arsenicoxydans]
gi|133737474|emb|CAL60517.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
Length = 234
Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats.
Identities = 83/232 (35%), Positives = 111/232 (47%), Gaps = 12/232 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q+I ++A A+R V L+AVSK + + A GQ F EN LQ
Sbjct: 1 MSVIRQNLQAVRQRITDAANSAQRDVHEVELLAVSKTFGADAVLAAAEAGQRAFGENYLQ 60
Query: 60 EAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
EA K +R + ++ FIG +QSNK I FD + V REK A LS +
Sbjct: 61 EALDKMDAVRAIRPDLPLEWHFIGPVQSNKTRPIAEHFDWVHAVDREKIAHRLSEQRPAT 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPH 173
L + +QVN E KSG +P + L + GLM IP + +
Sbjct: 121 LPPLNICLQVNISGEASKSGALPADAPGLAKAIAKLPHLRLRGLMAIPEPEDDEVRQRRS 180
Query: 174 FYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F+ L + + + L LSMGM+ D AIA GAT VRIGS IFG R
Sbjct: 181 FHQLRVLYEQLRAEGLPLDTLSMGMSADMPAAIAEGATIVRIGSAIFGTRNY 232
>gi|331005494|ref|ZP_08328872.1| hypothetical protein IMCC1989_2043 [gamma proteobacterium IMCC1989]
gi|330420686|gb|EGG94974.1| hypothetical protein IMCC1989_2043 [gamma proteobacterium IMCC1989]
Length = 228
Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats.
Identities = 82/227 (36%), Positives = 114/227 (50%), Gaps = 8/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
SL + L +Q+I +A RP++ + L+AVSK ++ I A + GQ F EN LQEA
Sbjct: 3 SLNDALIHVQQQIHIAAKKHGRPEEDIHLLAVSKTQPAETIAAAFALGQTAFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K L ++ FIG +QSNK EI F + +V R K + LS + L
Sbjct: 63 REKQEAL-AHLPIEWHFIGPIQSNKTREIAEHFSWVHSVDRLKIVTRLSQQRPVHLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QVN E KSG+ + + I Q + + GLM IP + + +A
Sbjct: 122 ICLQVNLDDETSKSGVALQELEQLAIATIQLPNVKLRGLMAIPKKTTDITQQRAAFATLA 181
Query: 182 RECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
R K L LSMGM+ D E AIA GAT VR+GS IFG R Q
Sbjct: 182 RSLKQLSSIALLDTLSMGMSNDMEAAIAEGATIVRVGSAIFGARKSQ 228
>gi|73542486|ref|YP_297006.1| hypothetical protein Reut_A2801 [Ralstonia eutropha JMP134]
gi|72119899|gb|AAZ62162.1| Protein of unknown function UPF0001 [Ralstonia eutropha JMP134]
Length = 229
Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats.
Identities = 82/228 (35%), Positives = 107/228 (46%), Gaps = 10/228 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ + I +A A R + V L+AVSK V +R A GQ F EN +Q
Sbjct: 1 MSVIAANLQAVYRGIAAAAQQAGRTPEEVVLLAVSKTVAPGIVREAFEAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E +K + L + FIG LQSNK + FD + + R K A LS +
Sbjct: 61 EGVEKIVALADLRSQITWHFIGPLQSNKTRLVAEHFDWVHALDRLKIAQRLSEQRPAGMA 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
L V IQVN E KSG+ P + + L + GLM IP +P + F
Sbjct: 121 PLQVCIQVNISNEASKSGVAPGEVPELARAVAALPGLRLRGLMAIPEPATDPAAQREPFT 180
Query: 176 LLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + A +L LSMGM+ D AIA GAT VRIG+ IFG R
Sbjct: 181 AMRNLLQSLQAEGLQLDTLSMGMSGDMNAAIAEGATIVRIGTAIFGAR 228
>gi|114332299|ref|YP_748521.1| hypothetical protein Neut_2339 [Nitrosomonas eutropha C91]
gi|114309313|gb|ABI60556.1| Protein of unknown function UPF0001 [Nitrosomonas eutropha C91]
Length = 238
Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 115/227 (50%), Gaps = 9/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++LQ K +I ++A R ++ L+A SK K+R A GQ +F EN LQE
Sbjct: 3 TIASRLQNVKNRIIDAAKNVGRDPATIQLLAASKTNTPDKLREAWEAGQTVFGENYLQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L ++ FIG +QSNK I F + + REK A+ LS + L
Sbjct: 63 LVKIRALADLP-IEWHFIGPIQSNKTKLIAENFSWVHGIDREKIATRLSAARPESLPPLQ 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V +QVN EI KSG+ P + + ++ +L + G+M +P + F ++
Sbjct: 122 VCVQVNVSGEITKSGVDPEKAAELAAFVSEQPRLQLRGIMAVPELTAVTALQREQFQMMR 181
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ + K L LSMGM+ D E AIA GAT VRIG+ IFG+R
Sbjct: 182 EVYEQLKQKGFILDTLSMGMSEDLENAIAEGATMVRIGTAIFGQRRY 228
>gi|260642854|ref|ZP_05417592.2| pyridoxal phosphate enzyme, YggS family [Bacteroides finegoldii DSM
17565]
gi|260620282|gb|EEX43153.1| pyridoxal phosphate enzyme, YggS family [Bacteroides finegoldii DSM
17565]
Length = 226
Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats.
Identities = 72/234 (30%), Positives = 113/234 (48%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L+ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 3 MSIADNLKQVLAEL----------PQGVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQE 52
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D++ FIG LQSNK+ ++ +I + K + ++ + K R +
Sbjct: 53 MTAKYESLPK--DIEWHFIGHLQSNKIKYMIPYVAMIHGIDTYKLLAEVNKQAGKAGRTV 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKP---HFY 175
+Q++ E K G P + ++ + + + + GLM + N + F
Sbjct: 111 NCLLQIHVAQEETKFGFSPEECREMLDAGEWKALAHVRICGLMGMASNTDNIEQINGEFR 170
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LLS + +E K +LSMGM+ D+ AIASG+T VR+GS IFGER
Sbjct: 171 LLSSLFKEIKENWFADSDVFRELSMGMSHDYHEAIASGSTLVRVGSKIFGEREY 224
>gi|317049428|ref|YP_004117076.1| alanine racemase domain-containing protein [Pantoea sp. At-9b]
gi|316951045|gb|ADU70520.1| alanine racemase domain protein [Pantoea sp. At-9b]
Length = 235
Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats.
Identities = 75/227 (33%), Positives = 108/227 (47%), Gaps = 8/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +++I +A R + ++L+AVSK + A++ GQ F EN +QE
Sbjct: 3 SIEHNLQQVRERIAAAAARCGRAPEEITLLAVSKTKPVSAVEEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L D+Q FIG LQSNK + F TV R++ A L+ + L
Sbjct: 63 VEKVTTLAAHPDLQWHFIGPLQSNKSRLVAEHFGWCHTVDRQRIAQRLNDQRPAHLPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQVN E KSGIM QL + GLM IP + + ++A
Sbjct: 123 VLIQVNISDENSKSGIMLEALPALAQEISALPQLCLRGLMAIPAPEQDYDRQLAVCQQMA 182
Query: 182 --------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LS+GM+ D E AIA+G+T VRIG+ +FG R
Sbjct: 183 AAFRALQQDYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAVFGARDY 229
>gi|118472564|ref|YP_886394.1| hypothetical protein MSMEG_2032 [Mycobacterium smegmatis str. MC2
155]
gi|118173851|gb|ABK74747.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
155]
Length = 252
Score = 269 bits (690), Expect = 1e-70, Method: Composition-based stats.
Identities = 81/224 (36%), Positives = 113/224 (50%), Gaps = 10/224 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
LQ +I + A R V L+ VSK VD ++RVA + G +F ENK+QEA +KW
Sbjct: 21 NLQAVNTRIGAALQRAGREPGEVRLLPVSKTVDEDRLRVAAAAGCTMFGENKVQEAMRKW 80
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L DV+ IG LQ+NK ++ + + + A+ L + R L VY+Q
Sbjct: 81 RNLSD-LDVEWSVIGHLQTNKAKDVAEFAAEFQALDNPRAAAALDRRLQALGRQLDVYVQ 139
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
VNT E K G+ P+ F+ L V GLM I +P +P F LL +
Sbjct: 140 VNTSGEESKYGLAPDDVIPFLKTLPAYTALRVRGLMTIAVFSTDPERVRPCFRLLRSLRD 199
Query: 183 ECKLT------KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + +LSMGM+ D+ELAIA G+T VR+G IFG RP
Sbjct: 200 QARDLDLIGPGELSMGMSGDYELAIAEGSTCVRVGQAIFGARPT 243
>gi|126738690|ref|ZP_01754395.1| alanine racemase domain protein [Roseobacter sp. SK209-2-6]
gi|126720489|gb|EBA17195.1| alanine racemase domain protein [Roseobacter sp. SK209-2-6]
Length = 219
Score = 269 bits (690), Expect = 2e-70, Method: Composition-based stats.
Identities = 95/215 (44%), Positives = 125/215 (58%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ K +IE + A R SV L+AVSK+ ++++ L G F EN++QEA KW
Sbjct: 3 LEDIKARIEAAEGKAGRALGSVQLIAVSKVQPNERVEAVLQEGHRCFGENRVQEAAGKWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
K++ + L IG LQ+NK + + LFDVI +V R K A L+ + ++IQ
Sbjct: 63 DFAKQFSGLDLHLIGPLQTNKARQAMELFDVIHSVDRPKLAKTLARLAQEIGNCPDLFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI+P T F+ CR L V+GLMCIPP HF LL+E+A
Sbjct: 123 VNTGAEEQKAGILPQDTDAFIAECRALD-LPVQGLMCIPPVEEPAVEHFALLAEMADRNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 182 LDGLSMGMSSDFEEAIAMGATHVRVGSAIFGARAY 216
>gi|319899420|ref|YP_004159517.1| hypothetical protein BARCL_1280 [Bartonella clarridgeiae 73]
gi|319403388|emb|CBI76952.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
Length = 226
Score = 269 bits (690), Expect = 2e-70, Method: Composition-based stats.
Identities = 105/215 (48%), Positives = 144/215 (66%), Gaps = 1/215 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ + +Q I + RP +++ L+AVSK V + I L GQ +FAEN++QEA +K
Sbjct: 10 DAWKNLQQDIAKTCENYHRPVENIQLIAVSKTVSADNIVPLLQVGQSLFAENRVQEANEK 69
Query: 65 WIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W PLR+++ ++L IG LQSNK +E V +FDVI+TV REK A L+ EM KQ + LP Y
Sbjct: 70 WPPLRQKFKTIELHLIGPLQSNKTTEAVKIFDVIQTVDREKIAKNLAKEMQKQKKHLPCY 129
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVN G E QKSGI P + K FV C+ Y L++ GLM IPP NP P+F LL+++A+E
Sbjct: 130 VQVNMGLEPQKSGIAPQEVKAFVAQCKNNYGLDIVGLMAIPPVQENPGPYFALLAKLAKE 189
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+KLSMGM+ DF++AI GA +RIGS +FG R
Sbjct: 190 TNLSKLSMGMSNDFKIAIQFGANVLRIGSALFGNR 224
>gi|332289947|ref|YP_004420799.1| alanine racemase [Gallibacterium anatis UMN179]
gi|330432843|gb|AEC17902.1| alanine racemase [Gallibacterium anatis UMN179]
Length = 229
Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats.
Identities = 76/233 (32%), Positives = 109/233 (46%), Gaps = 17/233 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L +Q+I + P V+L+AVSK I A GQ F EN +QE
Sbjct: 1 MEIAQNLAHIRQQIAD-CH----PTQEVTLLAVSKTKPFADILKAYHAGQRQFGENYVQE 55
Query: 61 AKKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K +++ D+ IG LQSNK + FD ++T+ R K A LS + +
Sbjct: 56 GVEKIQLAQQQNINDITWHLIGPLQSNKTRIVAEHFDWVQTIDRVKIAERLSQQRPDHLQ 115
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQ+N E KSGI P Q ++ +L + GLM IP + + +
Sbjct: 116 PLQVLIQINISDENSKSGITPQQMEELAQQIINLPKLQLRGLMAIPAPTEDINQQTAVFN 175
Query: 179 ----------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + K+ LSMGMT D + AIA G+T VRIG+ IFG+R
Sbjct: 176 QMKVLLQQLQQRFPQQKIDTLSMGMTDDMQTAIACGSTMVRIGTAIFGKRNYS 228
>gi|120603948|ref|YP_968348.1| alanine racemase [Desulfovibrio vulgaris DP4]
gi|304569675|ref|YP_009276.2| hypothetical protein DVU0051 [Desulfovibrio vulgaris str.
Hildenborough]
gi|120564177|gb|ABM29921.1| alanine racemase domain protein [Desulfovibrio vulgaris DP4]
Length = 242
Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats.
Identities = 80/233 (34%), Positives = 116/233 (49%), Gaps = 15/233 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + ++E + A R V+LVAVSK ++ + + GQ F EN +QEA
Sbjct: 10 LAERYAAVRHRLETAVRRAGRAPADVTLVAVSKYHPAEAVAAVAALGQRDFGENYVQEAL 69
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR---- 118
+K L E D+ IG +QS K ++ F +I TV EK A L + +
Sbjct: 70 QKQEALAGE-DILWHCIGHVQSRKAKDVAGRFALIHTVDSEKLAHNLHKALWRPEDDTCP 128
Query: 119 -FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHF 174
V +QVN G E+QKSGI +T Q L + GLMC+PP + +P F
Sbjct: 129 VVQDVLLQVNIGEEVQKSGIDAAETARLAETVLQLPTLRLCGLMCLPPFFDDGEAARPFF 188
Query: 175 YLLSEIARECKLT------KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L ++ + +L+ LSMGM+ DFE A+ GAT VR+G+ IFG RP +
Sbjct: 189 AALRKLRDDLELSLGVPLPHLSMGMSGDFEQAVEEGATIVRVGTDIFGPRPPR 241
>gi|28211286|ref|NP_782230.1| proline synthetase associated protein [Clostridium tetani E88]
gi|28203726|gb|AAO36167.1| proline synthetase associated protein [Clostridium tetani E88]
Length = 225
Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats.
Identities = 71/232 (30%), Positives = 114/232 (49%), Gaps = 21/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L K++I N +V+L+AVSK + I A + G F ENK+QE
Sbjct: 4 MSISENLHAIKKEIGN----------NVNLIAVSKTKPIEDIDKAYNLGIRDFGENKVQE 53
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K +KE D++ IG LQ NKV IV +I ++ + + + + +
Sbjct: 54 LVEKIDKFQKE-DIRWHLIGHLQRNKVKYIVGKVYLIHSLDSIRLLKEIERKYKDEDKVA 112
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLS 178
V IQ+N G + K GI + +D + C + + +EGLM I P + K +F +
Sbjct: 113 KVLIQINIGEDENKYGIKVEELEDMIKACEECSNVKIEGLMTILPMEDSEICKRYFKQMK 172
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+I + K + LSMGM+ D+++AI G+ +R+G GIFG+R
Sbjct: 173 KIFDDLKNRSFKNIEMKYLSMGMSGDYKIAIEEGSNMIRVGQGIFGKRDYNN 224
>gi|311232396|gb|ADP85250.1| alanine racemase domain protein [Desulfovibrio vulgaris RCH1]
Length = 243
Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats.
Identities = 80/233 (34%), Positives = 116/233 (49%), Gaps = 15/233 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + ++E + A R V+LVAVSK ++ + + GQ F EN +QEA
Sbjct: 11 LAERYAAVRHRLETAVRRAGRAPADVTLVAVSKYHPAEAVAAVAALGQRDFGENYVQEAL 70
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR---- 118
+K L E D+ IG +QS K ++ F +I TV EK A L + +
Sbjct: 71 QKQEALAGE-DILWHCIGHVQSRKAKDVAGRFALIHTVDSEKLAHNLHKALWRPEDDTCP 129
Query: 119 -FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHF 174
V +QVN G E+QKSGI +T Q L + GLMC+PP + +P F
Sbjct: 130 VVQDVLLQVNIGEEVQKSGIDAAETARLAETVLQLPTLRLCGLMCLPPFFDDGEAARPFF 189
Query: 175 YLLSEIARECKLT------KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L ++ + +L+ LSMGM+ DFE A+ GAT VR+G+ IFG RP +
Sbjct: 190 AALRKLRDDLELSLGVPLPHLSMGMSGDFEQAVEEGATIVRVGTDIFGPRPPR 242
>gi|210622347|ref|ZP_03293116.1| hypothetical protein CLOHIR_01064 [Clostridium hiranonis DSM 13275]
gi|210154335|gb|EEA85341.1| hypothetical protein CLOHIR_01064 [Clostridium hiranonis DSM 13275]
Length = 233
Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats.
Identities = 73/231 (31%), Positives = 120/231 (51%), Gaps = 14/231 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++ +++I + A A R D + L+AV+K VD K+ A++ + ENK QE
Sbjct: 3 NIRENIESIRKRIADVAKRAGRDADDIKLIAVTKTVDVDKVEEAIAADALDAGENKPQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ L + ++ IGSLQ+NKV I+ +I ++ RE A + K R +
Sbjct: 63 ARKYEVLGDK--IRWHQIGSLQTNKVKYIIDKVCMIHSLDREGLAEEIDKRANKIGRVID 120
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAM---GNPKPHFYLL 177
+QVN E K G+ + + FV L +K + ++GLM + P + F L
Sbjct: 121 CLVQVNISGEESKHGMSREEVEPFVRLVAEKYPNIKIKGLMTMAPFDAERDEIRKVFRDL 180
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E++ E ++ +LSMGMT DFE+A+ GAT VR+G+ IFG+R
Sbjct: 181 KELSDEINNMNIGNVEMNELSMGMTNDFEIAVEEGATMVRVGTAIFGKRNY 231
>gi|261379176|ref|ZP_05983749.1| pyridoxal phosphate enzyme, YggS family [Neisseria cinerea ATCC
14685]
gi|269144362|gb|EEZ70780.1| pyridoxal phosphate enzyme, YggS family [Neisseria cinerea ATCC
14685]
Length = 228
Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 107/227 (47%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + ++I + A R SVSL+AVSK S IR + GQ F EN +Q
Sbjct: 1 MTVLQQRYREVSERIGKLVLQAGRKPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLPDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTARRLSEQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
L + I+VN E K G+ P + + + + V GLMC+ A G+ K F
Sbjct: 121 LQMCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKAGGSEAELKAQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLSDLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|260775566|ref|ZP_05884463.1| hypothetical protein VIC_000944 [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608747|gb|EEX34912.1| hypothetical protein VIC_000944 [Vibrio coralliilyticus ATCC
BAA-450]
Length = 238
Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats.
Identities = 79/234 (33%), Positives = 106/234 (45%), Gaps = 13/234 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +IE + RP SV L+AVSK I A GQV F EN +QE
Sbjct: 3 SIQQNIEQITSQIEAAQQKCGRPLGSVQLLAVSKTKPFDAILEAARAGQVAFGENYVQEG 62
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + E ++ FIG +QSNK + F + TV R K A L+ + ++
Sbjct: 63 VDKVAYFAENHPELTLEWHFIGPIQSNKTRHVAESFAWVHTVDRAKIAQRLNDQRPQEMA 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQVNT E KSG ++ L L + GLM IP + + + S
Sbjct: 123 PLQVLIQVNTSSESSKSGASDDEIFALAELISSLPNLTLRGLMSIPANVSDYQSQLAAFS 182
Query: 179 EIAR----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+A E L LSMGM+ D E AI +G T VRIG+ IFG R
Sbjct: 183 HLAELKNRLAQRYPELNLDTLSMGMSGDMEAAIEAGTTMVRIGTAIFGARDYSN 236
>gi|134298580|ref|YP_001112076.1| alanine racemase domain-containing protein [Desulfotomaculum
reducens MI-1]
gi|134051280|gb|ABO49251.1| alanine racemase domain protein [Desulfotomaculum reducens MI-1]
Length = 226
Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 117/227 (51%), Gaps = 12/227 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + V K KI SA+ A R SV L+AV+K V + K R + G EN++QE
Sbjct: 1 MSIAENISVIKGKIIESALRAGRDPASVRLIAVTKTVSADKARECIDAGVGDLGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L + + IG LQ+NKV I ++ ++ R A + ++
Sbjct: 61 FRNK---LPEVPGARWHLIGHLQTNKVKYITGEVTLLHSLDRWSLAEEIHKRSLEAGIVT 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
P +QVN E K G+ + +DF+ ++++GLM I P + NP +P F L
Sbjct: 118 PALVQVNVAGEETKFGMAVQEVRDFITEVAGLSGISIQGLMTIAPLVENPEEVRPVFRQL 177
Query: 178 SEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A + K+ +LSMGMT D+++AI GAT VRIG+ IFG R
Sbjct: 178 RELATDLQEVPGVKMEQLSMGMTNDYQVAIEEGATLVRIGTAIFGSR 224
>gi|86144206|ref|ZP_01062542.1| hypothetical protein MED217_08185 [Leeuwenhoekiella blandensis
MED217]
gi|85829336|gb|EAQ47802.1| hypothetical protein MED217_08185 [Leeuwenhoekiella blandensis
MED217]
Length = 219
Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 111/228 (48%), Gaps = 21/228 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L+ FK ++ + V+LVAVSK ++ ++ A GQ IF ENK+QE
Sbjct: 3 DITQNLKQFKSEL----------PEDVTLVAVSKTKPNEDLQEAYDAGQRIFGENKIQEM 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW L K D+Q IG +Q+NKV + +I + R K ++ E K R +
Sbjct: 53 TDKWKALPK--DIQWHMIGHVQTNKVKYMAPYVSLIHSADRLKLFKEINKEAKKNERVID 110
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
V +QV E K G+ P + K F+ +N+ GLM + + + K F
Sbjct: 111 VLLQVKIAEEDSKFGMPPEEAKTFLEENKAANYPNVNIVGLMGMASFVDDETQIKREFAQ 170
Query: 177 LSEIA----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L +I + + LSMGM+ D++LA+ G+T VR+GS IFG R
Sbjct: 171 LEKIYNTFKEQYAFSVLSMGMSGDYKLALEYGSTMVRVGSAIFGARNY 218
>gi|258593029|emb|CBE69340.1| putative enzyme [NC10 bacterium 'Dutch sediment']
Length = 237
Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats.
Identities = 80/228 (35%), Positives = 120/228 (52%), Gaps = 11/228 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++++ +Q++ +A R D ++LVAV+K V +IR A+ G ++ EN++QEA
Sbjct: 10 VKDRIEQVRQRMAEAAHRVGRDPDEIALVAVTKTVPIPRIREAIDVGVMLLGENRVQEAS 69
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L V IG LQ+NK LF +I ++ K A L ++ + V
Sbjct: 70 DKMALLSSLP-VTWHLIGHLQTNKSRSAAELFGLIHSLDSVKLAVALDRHGAALAKQIRV 128
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
++VN G E K+G++ + + CRQ L +EGLM +PP NP +P F L
Sbjct: 129 LVEVNLGGEPSKTGVLEHDLVPLLESCRQFTHLVIEGLMAVPPFRRNPEDVRPFFRRLRL 188
Query: 180 IARE-------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E C L LSMGM+ D+E+AI GAT VRIG+ IF ERP
Sbjct: 189 LRDEAARACPDCPLRHLSMGMSHDYEIAIEEGATLVRIGTAIFDERPV 236
>gi|310817227|ref|YP_003965191.1| alanine racemase domain protein [Ketogulonicigenium vulgare Y25]
gi|308755962|gb|ADO43891.1| alanine racemase domain protein [Ketogulonicigenium vulgare Y25]
Length = 218
Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats.
Identities = 89/215 (41%), Positives = 126/215 (58%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +I ++A+ R V+L+AVSK+ + ++ L GQ +F EN++QEA KW
Sbjct: 3 LSDILSRIRDTALDCDRSAADVTLIAVSKVQPNDRVAAVLDAGQRVFGENRVQEAMGKWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R + DV L IG LQSNK + + LF+ I T+ R + A + + + +++Q
Sbjct: 63 DFRATYGDVDLHLIGPLQSNKARQAMELFNAIHTLDRLRLAETFARLAQELGKCPDLFVQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G +P + V R L V+GLMCIPPA P PHF +L+E+A
Sbjct: 123 VNTGAEPQKAGCLPEEVDSLVAAARAMD-LPVKGLMCIPPADQGPAPHFAMLAEMAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LT LSMGM+ DF++AI GAT VR+GS IFG+R
Sbjct: 182 LTGLSMGMSGDFDVAIRHGATHVRVGSAIFGDRTA 216
>gi|182677225|ref|YP_001831371.1| alanine racemase domain-containing protein [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182633108|gb|ACB93882.1| alanine racemase domain protein [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 230
Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats.
Identities = 103/218 (47%), Positives = 135/218 (61%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L V + I +A A R SV+LV VSK ++ I LS G+ IF EN++QEA
Sbjct: 13 NVLERLAVIRGHIARAARDAGRAPSSVNLVCVSKTFPAEAIEPVLSAGERIFGENRVQEA 72
Query: 62 KKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KW LR V+L IG LQSNK E V FD IETV REK A ++ E+ K +
Sbjct: 73 MDKWPALRPAYPGVELHLIGPLQSNKAREAVGFFDCIETVDREKIARAIAEEIQKSGKHP 132
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+YIQVNTG E QK+G++P + F+ C++++ L + GLMCIPP PHF LL++I
Sbjct: 133 RLYIQVNTGAEPQKAGVLPQEADSFIEQCQKEFGLVISGLMCIPPVDDQASPHFALLNKI 192
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A LT LSMGM+ D+ELAI GAT VRIGS +FG R
Sbjct: 193 AERHGLTNLSMGMSADYELAIQLGATHVRIGSALFGAR 230
>gi|312793527|ref|YP_004026450.1| alanine racemase domain-containing protein [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312875958|ref|ZP_07735947.1| alanine racemase domain protein [Caldicellulosiruptor lactoaceticus
6A]
gi|311797156|gb|EFR13496.1| alanine racemase domain protein [Caldicellulosiruptor lactoaceticus
6A]
gi|312180667|gb|ADQ40837.1| alanine racemase domain protein [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 233
Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats.
Identities = 75/231 (32%), Positives = 116/231 (50%), Gaps = 14/231 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L ++ ++IE + + A R D VSL+ +K VD + I++A G IF EN++QE
Sbjct: 6 TLKKNIEDVMERIEMACLRAGRKPDEVSLLGATKGVDVETIKLANQFGLKIFGENRVQEF 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ L ++ FIG LQ+NK+ I +I ++ + L K +
Sbjct: 66 LPKFQELP---YLEWHFIGRLQTNKIKYIYDKVSLIHSIDSPQQIDELEKRCTKAGKTCS 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V I++N G E K GI P + + + ++G M IPP + + +F +
Sbjct: 123 VLIEINIGGEESKGGINPEKVDHLIEKISNSSHVILKGFMTIPPIEDDDMKLRGYFRKMK 182
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
EI + K + LSMGM+ DFE+AI GAT VRIG+ IFGERP +
Sbjct: 183 EIFEKYKKLNYNNVNIEVLSMGMSGDFEVAIEEGATLVRIGTKIFGERPKK 233
>gi|83949878|ref|ZP_00958611.1| alanine racemase domain protein [Roseovarius nubinhibens ISM]
gi|83837777|gb|EAP77073.1| alanine racemase domain protein [Roseovarius nubinhibens ISM]
Length = 216
Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats.
Identities = 93/221 (42%), Positives = 125/221 (56%), Gaps = 6/221 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL + I + A R SVSL+AVSK ++ L G +F EN++QE
Sbjct: 1 MSLSE----ITEAIAKAEKYAGRAPGSVSLIAVSKKQPDARVEEVLDEGHRVFGENRVQE 56
Query: 61 AKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW R+++D ++L IG LQ+NKV + + L I +V R K A ++ ++
Sbjct: 57 AAGKWPGFREKYDGIELHIIGPLQTNKVRQAMELAQAIHSVDRPKLAQTIARIAQEEGHC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++IQVNTG E QK+GI+P F+ CR L + GLMCIPP P HF LL++
Sbjct: 117 PDLFIQVNTGEEEQKAGILPKDADAFITECRGLD-LPLRGLMCIPPVDEEPSLHFALLAK 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
IA L LSMGM+ DFE AIA GAT VR+GS IFG+R
Sbjct: 176 IAARNGLDGLSMGMSGDFERAIALGATHVRVGSAIFGDRAY 216
>gi|169796921|ref|YP_001714714.1| hypothetical protein ABAYE2917 [Acinetobacter baumannii AYE]
gi|169149848|emb|CAM87739.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
Length = 235
Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats.
Identities = 75/225 (33%), Positives = 111/225 (49%), Gaps = 7/225 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q Q+I+ + LA+R ++V L+AVSK S+++R + GQ F EN LQEA
Sbjct: 9 LQDARQHVLQQIKTACELAQRAPETVQLLAVSKTHQSERLREMYAAGQRAFGENYLQEAL 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ D++ FIG +Q NK + FD + V R A LS + L +
Sbjct: 69 DKIDALQD-LDIEWHFIGHVQRNKTKHLAEQFDWVHGVDRLIIAERLSNQRGDDQAALNI 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-----NPKPHFYLL 177
+QVN + K G P + V Q ++ + GLM IP + K F +
Sbjct: 128 CLQVNIDGQDSKDGCAPEDVAELVAQMSQLPKIRLRGLMVIPAPDNTAAFVDAKKLFDAV 187
Query: 178 S-EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ A + LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 188 KDQHAHPEEWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGARDYS 232
>gi|262373214|ref|ZP_06066493.1| conserved hypothetical protein [Acinetobacter junii SH205]
gi|262313239|gb|EEY94324.1| conserved hypothetical protein [Acinetobacter junii SH205]
Length = 233
Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats.
Identities = 71/219 (32%), Positives = 109/219 (49%), Gaps = 7/219 (3%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
+IE + + +R ++V L+AVSK S +R + GQ F EN LQEA K L
Sbjct: 15 QVLSQIEQACLRVQRDPNTVQLLAVSKTHPSLSLREMYAVGQRSFGENYLQEALPKIEEL 74
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
+ D++ FIG +Q NK + FD + V R A LS + ++ + L + +QVN
Sbjct: 75 QD-LDIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSSQRLETQKLLNICLQVNI 133
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-----PAMGNPKPHFYLLSEIARE 183
+ K G PN+ + V + L + GLM IP A + K F + + +
Sbjct: 134 DGQDSKDGCEPNEVAELVEQISRLPNLRLRGLMVIPAPNNVAAFADAKNLFDQVKSLHAQ 193
Query: 184 CK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGM+ D + AIA+G+T VR+G+ +FG R
Sbjct: 194 PQDWDTLSMGMSADLDAAIAAGSTMVRVGTALFGARDYS 232
>gi|312622419|ref|YP_004024032.1| alanine racemase domain-containing protein [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202886|gb|ADQ46213.1| alanine racemase domain protein [Caldicellulosiruptor
kronotskyensis 2002]
Length = 233
Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats.
Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 14/231 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L ++ ++IE + + A R D VSL+ +K VD + I++A G IF EN++QE
Sbjct: 6 TLKKNIEDVMERIEMACLRAGRKPDEVSLLGATKGVDVETIKLANQFGLKIFGENRVQEF 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ L ++ FIG LQ+NK+ I +I ++ + L K S+
Sbjct: 66 LPKFQELP---YLEWHFIGRLQTNKIKYIYDKVSLIHSIDSPQQIDELEKRCAKASKICS 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V I++N G E K G+ + D + + ++G M IPP + + +F +
Sbjct: 123 VLIEINIGGEESKGGVSIEKVDDLIEKISNCSHVILKGFMTIPPIEDDEMKLRVYFRKMK 182
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
EI + K + LSMGM+ DFE+AI GAT VRIG+ IFGERP +
Sbjct: 183 EIFEKYKKLNYNNVNIEVLSMGMSGDFEVAIEEGATLVRIGTKIFGERPQK 233
>gi|261401838|ref|ZP_05987963.1| pyridoxal phosphate enzyme, YggS family [Neisseria lactamica ATCC
23970]
gi|269208020|gb|EEZ74475.1| pyridoxal phosphate enzyme, YggS family [Neisseria lactamica ATCC
23970]
Length = 234
Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 105/227 (46%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AVSK S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGRKPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLPDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTARRLSEQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + K F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|269468040|gb|EEZ79758.1| hypothetical protein Sup05_0635 [uncultured SUP05 cluster
bacterium]
Length = 212
Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats.
Identities = 76/217 (35%), Positives = 111/217 (51%), Gaps = 8/217 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +I+ V+L+AVSK + ++ + GQ F EN LQE+
Sbjct: 2 IAQNLAKIHHRIDAVKH-----SQEVTLIAVSKTKPATDLQQTIDAGQRHFGENYLQESL 56
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L+ + D+ FIG +QSNK +I FD + +V R K A L+ + + L V
Sbjct: 57 EKIETLKGQ-DLIWHFIGPIQSNKTKQIAENFDWVHSVDRLKIAKRLNDQRPENLEKLNV 115
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE-IA 181
+QVN E KSG++ ++ V +++ G MCIP N F +SE +
Sbjct: 116 LLQVNIDNEPTKSGVLIDEIDALVAHFENFPNISLRGFMCIPSP-ANSASSFAKMSEILK 174
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D ELAI +GAT VRIGS IFG+R
Sbjct: 175 KHANLDALSMGMSSDLELAIENGATFVRIGSDIFGKR 211
>gi|126661816|ref|ZP_01732815.1| hypothetical protein FBBAL38_00655 [Flavobacteria bacterium BAL38]
gi|126625195|gb|EAZ95884.1| hypothetical protein FBBAL38_00655 [Flavobacteria bacterium BAL38]
Length = 225
Score = 269 bits (688), Expect = 2e-70, Method: Composition-based stats.
Identities = 69/237 (29%), Positives = 105/237 (44%), Gaps = 31/237 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L K ++ V+LVAVSK + A + GQ IF ENK+QE
Sbjct: 1 MLIAQNLTEIKSQL----------PKQVTLVAVSKTKPVADLMEAYNAGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KW + K D++ IG +Q+NKV + +I V K ++ + K +R +
Sbjct: 51 MTDKWEDMPK--DIEWHMIGHVQTNKVKYMAPYVSLIHGVDSLKLLQEINKQAAKNNRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILC--------RQKYQLNVEGLMCIPPAMGN--- 169
+QV E K G+ + ++ + + + + GLM + N
Sbjct: 109 DCLLQVYIAEEESKFGLDEQELEEMLNKLLDSARSDNKTLKNIRIVGLMGMATFTENKDQ 168
Query: 170 PKPHFYLLSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ F L I C+L LSMGM+ D++LAI+ G+T VRIGS IFG R
Sbjct: 169 IEKEFKHLKTIFDKHKTLNTEHCQLNTLSMGMSGDYQLAISCGSTMVRIGSSIFGSR 225
>gi|224826749|ref|ZP_03699849.1| alanine racemase domain protein [Lutiella nitroferrum 2002]
gi|224600969|gb|EEG07152.1| alanine racemase domain protein [Lutiella nitroferrum 2002]
Length = 231
Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats.
Identities = 79/230 (34%), Positives = 110/230 (47%), Gaps = 11/230 (4%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M+ + + L +Q++ + A R SV L+AVSK + I+ A + GQ F EN +
Sbjct: 1 MTSAISSSLAAVRQRLAAAEAAAGRASGSVCLLAVSKTFPADAIQEAYAAGQRAFGENYV 60
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QE + K L D++ FIG LQSNK + L + +V R K A LS +
Sbjct: 61 QELQAKGGVLGG-LDIEWHFIGPLQSNKTRPVAELAHWVHSVERLKIAERLSSQRPASLP 119
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFY 175
L V +QVN E KSG P++ +L + GLMCIP + F
Sbjct: 120 PLNVCLQVNVSGEGSKSGCEPHEVLALARAVAALPRLTLRGLMCIPEPTADQARLAGQFA 179
Query: 176 LLSEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LL + E L LSMGM+ D ELA+ G+T VR+G+ IFG R
Sbjct: 180 LLRRLRDEMAAQGLALDTLSMGMSADLELAVREGSTLVRVGTAIFGSRTY 229
>gi|213156676|ref|YP_002318337.1| hypothetical protein AB57_0946 [Acinetobacter baumannii AB0057]
gi|215484383|ref|YP_002326614.1| UPF0001 protein [Acinetobacter baumannii AB307-0294]
gi|301345278|ref|ZP_07226019.1| hypothetical protein AbauAB0_03519 [Acinetobacter baumannii AB056]
gi|301510182|ref|ZP_07235419.1| hypothetical protein AbauAB05_01354 [Acinetobacter baumannii AB058]
gi|301595729|ref|ZP_07240737.1| hypothetical protein AbauAB059_07952 [Acinetobacter baumannii
AB059]
gi|332853754|ref|ZP_08434966.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter baumannii
6013150]
gi|332871126|ref|ZP_08439724.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter baumannii
6013113]
gi|213055836|gb|ACJ40738.1| hypothetical protein AB57_0946 [Acinetobacter baumannii AB0057]
gi|213987503|gb|ACJ57802.1| UPF0001 protein [Acinetobacter baumannii AB307-0294]
gi|332728440|gb|EGJ59815.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter baumannii
6013150]
gi|332731712|gb|EGJ62993.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter baumannii
6013113]
Length = 230
Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats.
Identities = 75/225 (33%), Positives = 111/225 (49%), Gaps = 7/225 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q Q+I+ + LA+R ++V L+AVSK S+++R + GQ F EN LQEA
Sbjct: 4 LQDARQHVLQQIKTACELAQRAPETVQLLAVSKTHQSERLREMYAAGQRAFGENYLQEAL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ D++ FIG +Q NK + FD + V R A LS + L +
Sbjct: 64 DKIDALQD-LDIEWHFIGHVQRNKTKHLAEQFDWVHGVDRLIIAERLSNQRGDDQAALNI 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-----NPKPHFYLL 177
+QVN + K G P + V Q ++ + GLM IP + K F +
Sbjct: 123 CLQVNIDGQDSKDGCAPEDVAELVAQMSQLPKIRLRGLMVIPAPDNTAAFVDAKKLFDAV 182
Query: 178 S-EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ A + LSMGM+ D E AIA+G+T VR+G+ +FG R
Sbjct: 183 KDQHAHPEEWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGARDYS 227
>gi|319407775|emb|CBI81422.1| conserved hypothetical protein [Bartonella sp. 1-1C]
Length = 226
Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats.
Identities = 105/224 (46%), Positives = 148/224 (66%), Gaps = 6/224 (2%)
Query: 1 MSLG-----NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAE 55
M++ + + +Q I + RP ++ L+AVSK V + I L GQ +FAE
Sbjct: 1 MNIPQISSIDAWKNLQQDIAKTCQDYHRPVKNIQLIAVSKTVTANNIVPLLKAGQSLFAE 60
Query: 56 NKLQEAKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
N++QEA +KW LR++++ ++L IG LQSNK +E V++FDVI+TV REK A L+ EM
Sbjct: 61 NRVQEAAEKWPSLRQQFNTIELHLIGPLQSNKTAEAVTIFDVIQTVDREKIAKSLAEEMH 120
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
KQ + LP YIQVN G E QKSGI P++ K FV C+ Y L++ GLM IPP NP P+F
Sbjct: 121 KQKKHLPCYIQVNIGLEPQKSGIFPHEVKAFVAQCKNNYGLDIIGLMAIPPLQENPGPYF 180
Query: 175 YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL+++A+E L+KLSMGM+ DF++A+ GA +RIGS +FG R
Sbjct: 181 ALLAKLAKETGLSKLSMGMSNDFKIALQFGANVLRIGSALFGPR 224
>gi|282854076|ref|ZP_06263413.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
J139]
gi|282583529|gb|EFB88909.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
J139]
Length = 238
Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats.
Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 13/235 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L + +I+++ R VSL+ VSK + A G +F ENK+Q+
Sbjct: 1 MSVADNLAAVRTRIDDACRACDRNPGEVSLLPVSKTKPPSMVDEAYRAGYRLFGENKVQD 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A K + + ++ IG LQ+NK + + + K A L + K+ R
Sbjct: 61 ALAKSELMDDDHPGLEWSIIGGLQTNKAKYVARFATEFQALDSLKIAHELDKRLQKEGRQ 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYL 176
L V +Q+N+ E QKSGI P + DF L+V GLM + + + F L
Sbjct: 121 LRVLVQMNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRGLMTVALNSSDQRAVADCFDL 180
Query: 177 L----SEIARECK----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER-PCQT 222
+ ++ +E ++LSMGM+ D E+AIA G+T VRIG+ IFG R P +T
Sbjct: 181 VVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQVRIGTDIFGTRDPVRT 235
>gi|17548904|ref|NP_522244.1| hypothetical protein RS01766 [Ralstonia solanacearum GMI1000]
gi|17431154|emb|CAD17834.1| putative predicted enzyme with a tim-barrel fold protein [Ralstonia
solanacearum GMI1000]
Length = 226
Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats.
Identities = 100/218 (45%), Positives = 137/218 (62%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + + ++ I+++AI R D+V+LVA SK V+S +I+ A+ G +F EN++QEA
Sbjct: 4 NLEDNIGRIRKAIQHAAIDNGRRADAVTLVAASKTVESHRIQKAIDLGLTVFGENRVQEA 63
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KW LR ++L IG LQSNKV + V LFDVIE+V R + A ++ E +Q
Sbjct: 64 VSKWPELRSRNPGIELHLIGPLQSNKVRQAVDLFDVIESVDRSRLARAIAEEAERQGHAP 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+YIQVN G E QK G++P + + CR YQLNV+GLMCIPPA +P HF L I
Sbjct: 124 AIYIQVNVGKEPQKGGVLPAEASALIGECRDVYQLNVQGLMCIPPAGLDPSGHFAGLRSI 183
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A + L LSMGM+ D+ AIA GAT VR+GS +FG R
Sbjct: 184 AADHGLHVLSMGMSADYPQAIAQGATHVRVGSALFGAR 221
>gi|289578636|ref|YP_003477263.1| alanine racemase domain protein [Thermoanaerobacter italicus Ab9]
gi|289528349|gb|ADD02701.1| alanine racemase domain protein [Thermoanaerobacter italicus Ab9]
Length = 234
Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats.
Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 12/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++ K+ I+ A+ R + + +VA +K + I+ A++CG ENK+QE
Sbjct: 4 TICENIRKIKENIKEHALKVNRNPEEILIVAATKTFGVETIKEAIACGITDIGENKVQEL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ L++E V FIG LQ NKV I+ +I ++ K A + +++ +
Sbjct: 64 NEKYPYLKEE--VNFHFIGHLQRNKVKYIIDKVKLIHSLDSIKLAEEIDKRAKQKNLIID 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM--GNPKPHFYLLSE 179
+++N G E K GI P +FV + + + GLM I P + +P+F + E
Sbjct: 122 CLVEINIGGEESKYGIPPEGMHNFVKEIEKYDNIRIRGLMTIAPYLPPEEVRPYFRKMKE 181
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E K + LSMGM+ D+ +A+ GA VRIG+ IFG+R
Sbjct: 182 LFEELKEIKQYNVEVEFLSMGMSNDYWVAVEEGANIVRIGTSIFGQRQY 230
>gi|160882640|ref|ZP_02063643.1| hypothetical protein BACOVA_00593 [Bacteroides ovatus ATCC 8483]
gi|237718405|ref|ZP_04548886.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|260173862|ref|ZP_05760274.1| hypothetical protein BacD2_18472 [Bacteroides sp. D2]
gi|299149060|ref|ZP_07042122.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 3_1_23]
gi|315922125|ref|ZP_07918365.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|156111955|gb|EDO13700.1| hypothetical protein BACOVA_00593 [Bacteroides ovatus ATCC 8483]
gi|229452338|gb|EEO58129.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|298513821|gb|EFI37708.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 3_1_23]
gi|313696000|gb|EFS32835.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 222
Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats.
Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 26/232 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L+ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MSIADNLKQVLAEL----------PQGVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D++ FIG LQ+NK+ ++ +I + K + ++ + +K R +
Sbjct: 51 MTAKYESLPK--DIEWHFIGHLQTNKIKYMIPYVAMIHGIDSYKLLAEVNKQAVKAGRTV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMG---NPKPHFY 175
+Q++ E K G P + K+ + ++ + + GLM + F
Sbjct: 109 NCLLQIHVAQEETKFGFSPEECKEMLNAGEWKELTHVRICGLMGMASNTDCIEQINREFG 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL+ + E K +LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 169 LLNRLFNEIKTTWFIHSDTFCELSMGMSHDYHEAIAAGSTLVRVGSKIFGER 220
>gi|119503505|ref|ZP_01625588.1| hypothetical protein MGP2080_03160 [marine gamma proteobacterium
HTCC2080]
gi|119460567|gb|EAW41659.1| hypothetical protein MGP2080_03160 [marine gamma proteobacterium
HTCC2080]
Length = 228
Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats.
Identities = 71/225 (31%), Positives = 109/225 (48%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L ++I + LA R SVSL+AVSK + IR A GQ F EN QEA
Sbjct: 5 NVATNLHRVWRRIGEAEQLANRHSGSVSLLAVSKTKPDRYIRAAWEAGQRAFGENYAQEA 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K L + ++ FIG +QSNK + + ++ R K A LS + + L
Sbjct: 65 EEKARRL-DDLTIEWHFIGPIQSNKTRGLAETMAWVHSIDRLKIARRLSDQRPQHLPPLN 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QV E KSGI P++ + L++ GLM IP A + + ++
Sbjct: 124 LCLQVKLSDEPSKSGIAPSEIPALAAQITELPNLSLRGLMAIPAATSDYQQQRMAFKQLQ 183
Query: 182 --------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ LSMGM+ D E A+ G+T VR+G+ IFG R
Sbjct: 184 TQLFELQKQHPEVDTLSMGMSGDLEAAVVEGSTLVRVGTDIFGAR 228
>gi|145219349|ref|YP_001130058.1| alanine racemase domain-containing protein [Prosthecochloris
vibrioformis DSM 265]
gi|145205513|gb|ABP36556.1| alanine racemase domain protein [Chlorobium phaeovibrioides DSM
265]
Length = 232
Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats.
Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ LQ +Q+IE +A+ A R S+ L+AVSK + IR A G +F E+ LQE
Sbjct: 3 SIRAGLQNIQQRIEAAAVEAGRDPASIRLIAVSKTKPAGMIREAFDAGHSLFGESYLQEF 62
Query: 62 KKKW-IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K PL + ++ FIG LQSNKV ++ +I + + TA LS + ++Q+
Sbjct: 63 LEKRTDPLLEGLPIEWHFIGHLQSNKVRSVIGKVSLIHGIDKISTARELSRQALRQNLHA 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE 179
++VNT E K G+ ++ + + GLM I P + + F L +
Sbjct: 123 DYLLEVNTSGESTKYGMAEDEVLSAAETLFTLPSITLRGLMNIASPDEASARNEFRRLRQ 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + L++LSMGM+ DFE A+ GAT +R+G+ IFG R
Sbjct: 183 LLKQLREVAPNPEELSELSMGMSGDFESAVMEGATMIRVGTAIFGAR 229
>gi|293371408|ref|ZP_06617839.1| pyridoxal phosphate enzyme, YggS family [Bacteroides ovatus SD CMC
3f]
gi|292633605|gb|EFF52163.1| pyridoxal phosphate enzyme, YggS family [Bacteroides ovatus SD CMC
3f]
Length = 222
Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats.
Identities = 69/232 (29%), Positives = 113/232 (48%), Gaps = 26/232 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L+ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MSIADNLKQVLAEL----------PQGVRLVAVSKFHPNEAIEEAYQAGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D++ FIG LQ+NK+ ++ +I + K + ++ + +K R +
Sbjct: 51 MTAKYESLPK--DIEWHFIGHLQTNKIKYMIPYVAMIHGIDSYKLLAEVNKQAVKAGRTV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKP---HFY 175
+Q++ E K G P + K+ + ++ + + GLM + + F
Sbjct: 109 NCLLQIHVAQEETKFGFSPEECKEMLNAGEWKELTHVRICGLMGMASNTDCIEQINWEFG 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL+ + E K +LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 169 LLNRLFNEIKTTWFIHSDTFCELSMGMSHDYHEAIAAGSTLVRVGSKIFGER 220
>gi|305667230|ref|YP_003863517.1| hypothetical protein FB2170_13311 [Maribacter sp. HTCC2170]
gi|88708164|gb|EAR00402.1| hypothetical protein FB2170_13311 [Maribacter sp. HTCC2170]
Length = 226
Score = 268 bits (687), Expect = 3e-70, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 107/230 (46%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L KQ + D V+LVAVSK + I A GQ IF ENK+QE
Sbjct: 9 MSIATNLNKIKQAL----------PDDVTLVAVSKTKPNTSILEAYEAGQRIFGENKIQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW L K D+Q IG +Q NKV + +I V + ++ + K +R +
Sbjct: 59 MAQKWEALPK--DIQWHMIGHVQRNKVKYMSEFVSLIHGVDSFRLLKEINKQAKKHNRTI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGN---PKPHFY 175
+QV+ E K G+ ++ K ++ + + GLM + N + F
Sbjct: 117 SCLLQVHIADEETKFGLDESELKTITNSEEFKRLENIKIIGLMGMATFTNNKTQIRKEFK 176
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L ++ K ++ LSMGM+ D+ +AI G+T VRIGS IFG R
Sbjct: 177 NLKDVFDVLKESLPHVSTLSMGMSGDYTVAIEEGSTMVRIGSSIFGARNY 226
>gi|110835530|ref|YP_694389.1| hypothetical protein ABO_2669 [Alcanivorax borkumensis SK2]
gi|110648641|emb|CAL18117.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
Length = 230
Score = 268 bits (687), Expect = 4e-70, Method: Composition-based stats.
Identities = 75/230 (32%), Positives = 112/230 (48%), Gaps = 9/230 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L ++I++ R SV L+AVSK + ++ GQ F EN LQ
Sbjct: 2 MTDVKSPLLHINEQIKSHCERVGRDPHSVQLLAVSKTRTADELAKLADQGQRHFGENYLQ 61
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K LR + FIG +QSNK +I + FD + +V R K A LS + +S
Sbjct: 62 EALAKIAALRGR-GLVWHFIGPIQSNKTRDIAAHFDWVHSVDRLKVARRLSEQRPPESAP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLL 177
L + IQVN E KSG+ + + + GLM IP A + + F L
Sbjct: 121 LNLCIQVNVDDEASKSGVALAGVAELAAAVDALPNIRLRGLMAIPRADNDDGNRAAFRQL 180
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + + L LSMGM+ D+ +AI GAT +R+G+ +FG RP +
Sbjct: 181 AMTLSQLRNTMPALDTLSMGMSADYPVAIEEGATVIRLGTALFGPRPPKA 230
>gi|255590737|ref|XP_002535350.1| proline synthetase associated protein, putative [Ricinus communis]
gi|223523376|gb|EEF27030.1| proline synthetase associated protein, putative [Ricinus communis]
Length = 238
Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 108/227 (47%), Gaps = 11/227 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + L +Q+I ++ + V+L AVSK + IR A GQ +F EN LQ
Sbjct: 1 MTALSDNLACIRQQITDAQARFQ-AMQPVTLCAVSKAQPATAIRAAYDAGQTVFGENYLQ 59
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA +K L + FIG +QSNK I FD + +V R K A LS
Sbjct: 60 EALQKQAELDDCA-IAWHFIGPIQSNKTQPIARHFDWVHSVDRLKIAQRLSNARPSDLPP 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYL 176
L + +QVN E KSG + + + +Q L + GLM IP + F
Sbjct: 119 LNICLQVNISEEASKSGASGQELLELALNIKQLPHLQLRGLMAIPAPCSDFEQQRDQFRQ 178
Query: 177 LSEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + +L LS+GM+ DF AIA GAT VRIG+ IFG R
Sbjct: 179 VRALFEQLNSHGLQLDTLSIGMSGDFAAAIAEGATLVRIGTAIFGAR 225
>gi|333030146|ref|ZP_08458207.1| protein of unknown function UPF0001 [Bacteroides coprosuis DSM
18011]
gi|332740743|gb|EGJ71225.1| protein of unknown function UPF0001 [Bacteroides coprosuis DSM
18011]
Length = 223
Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats.
Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 25/232 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ +++I + V LVAVSK IR A + GQ IF E+K QE
Sbjct: 1 MSITTNLKEIQKQI----------PEEVRLVAVSKYHSVDDIREAYNAGQRIFGESKAQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L +E D+Q FIG LQSNK+ I +I +V + ++ E K+ R +
Sbjct: 51 LIAKHEELPQE-DIQWHFIGHLQSNKIKYIAPFISLIHSVDTFRLLKNINKEAKKEGRII 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNPK---PHFY 175
P +Q++ E K G + +D + ++ + + G+M + + F
Sbjct: 110 PCLLQLHIADEDTKYGFSFTECRDMLKEGKWKELKNVKIAGVMGMATFTEDENLVKSEFK 169
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + E + T++SMGM++D+ +AI G+T +R+GS IFGER
Sbjct: 170 ALKDFFSEIQKEFFTTNEDFTEISMGMSQDYPIAIKEGSTLIRVGSKIFGER 221
>gi|299771278|ref|YP_003733304.1| hypothetical protein AOLE_15220 [Acinetobacter sp. DR1]
gi|298701366|gb|ADI91931.1| hypothetical protein AOLE_15220 [Acinetobacter sp. DR1]
Length = 230
Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats.
Identities = 72/224 (32%), Positives = 113/224 (50%), Gaps = 7/224 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q Q+I+ + A+R ++V L+AVSK S+ +R + GQ F EN LQEA
Sbjct: 4 LQDARQHVLQQIQRACEHAQRSPETVQLLAVSKTHPSESLREMYAAGQRAFGENYLQEAL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ +++ FIG +Q NK + FD + V R A LS + ++ L +
Sbjct: 64 DKIEALQD-LEIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQRLQNQSDLNI 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-----NPKPHFYLL 177
+QVN + K G P++ + V Q ++ + GLM IP + K F +
Sbjct: 123 CLQVNIDGQDSKDGCAPDEVAELVAQISQLAKIKLRGLMVIPAPDNTAAFVDAKALFDAV 182
Query: 178 SEIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E + LSMGM+ D + AIA+G+T VR+G+ +FG+R
Sbjct: 183 KEKHAHPEHWDTLSMGMSGDLDAAIAAGSTMVRVGTALFGKRDT 226
>gi|89890568|ref|ZP_01202078.1| conserved hypothetical protein, TIM-barrel fold [Flavobacteria
bacterium BBFL7]
gi|89517483|gb|EAS20140.1| conserved hypothetical protein, TIM-barrel fold [Flavobacteria
bacterium BBFL7]
Length = 222
Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats.
Identities = 69/233 (29%), Positives = 103/233 (44%), Gaps = 27/233 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L F++ IE A +LVAVSK ++ A GQ F ENK+QE
Sbjct: 1 MSIKDHLLRFRESIEPKA----------TLVAVSKTKPISDLQEAYDAGQRHFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW L K D+ IG Q NKV + +I +V + ++ + +K R +
Sbjct: 51 MTEKWETLPK--DIHWHMIGHTQRNKVKYMAPYVHLIHSVDSPRLLKEINKQAVKNERVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGN---PKPHFY 175
+Q++ E K G N+ + + + + GLM + N + F
Sbjct: 109 DCLLQIHIAEEETKFGFDQNELLELLSSDAFAGYKNVRITGLMGMATFTDNKEQVRKEFK 168
Query: 176 LLSEIAREC----------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + L LSMGMT D+E+A+ G+T VRIGS IFG R
Sbjct: 169 SLKTLLDHINDNHLISDSHDLKTLSMGMTGDYEIALEEGSTMVRIGSAIFGSR 221
>gi|83941784|ref|ZP_00954246.1| alanine racemase domain protein [Sulfitobacter sp. EE-36]
gi|83847604|gb|EAP85479.1| alanine racemase domain protein [Sulfitobacter sp. EE-36]
Length = 217
Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats.
Identities = 97/215 (45%), Positives = 122/215 (56%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ +I + A R SV L+AVSK+ ++ LS G F EN++QEA+ KW
Sbjct: 3 LQDITSRIAKAETDAGRTPGSVELIAVSKVQPDARVAAVLSEGHRCFGENRVQEAEGKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+E+D V+L IG LQSNK LFDVI T+ R K A + + R +++Q
Sbjct: 63 AFRQEFDGVKLHLIGPLQSNKARSAFELFDVIHTLDRPKLAQTFARLAQEMGRCPDMFVQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G+ P DF+ C L V GLMCIPP HF LL++IA
Sbjct: 123 VNTGEEDQKAGVHPADADDFIKECLSLD-LPVRGLMCIPPVDEEAALHFALLAKIAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 182 LRDLSMGMSSDFEKAIALGATHVRVGSAIFGERTA 216
>gi|302871855|ref|YP_003840491.1| alanine racemase domain protein [Caldicellulosiruptor obsidiansis
OB47]
gi|302574714|gb|ADL42505.1| alanine racemase domain protein [Caldicellulosiruptor obsidiansis
OB47]
Length = 238
Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 113/230 (49%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++ +IE + I + R +SL+ +K VD + I++A G IF EN++QE
Sbjct: 12 LKKNIEDVINRIEKACIRSGRNPSEISLLGATKGVDVETIKLANQFGLKIFGENRVQEFL 71
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L ++ FIG LQ+NK+ I +I ++ + L K + V
Sbjct: 72 PKFQYLP---YLEWHFIGRLQTNKIKYIFDKVSLIHSIDSPQQIDELEKRCAKAGKACNV 128
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
I++N G E K G+ + D + + ++G M IPP + K +F + E
Sbjct: 129 LIEINIGGEESKGGVSIEKVDDLIEKISNCSHVILKGFMTIPPIEDDDKKLRWYFRRMKE 188
Query: 180 IARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
I + K+ LSMGM+ DFE+AI GAT VRIG+ IFGERP +
Sbjct: 189 IFEKYKKLNYNSVKIEVLSMGMSNDFEVAIEEGATLVRIGTKIFGERPKK 238
>gi|226952374|ref|ZP_03822838.1| alanine racemase domain-containing protein [Acinetobacter sp. ATCC
27244]
gi|226836826|gb|EEH69209.1| alanine racemase domain-containing protein [Acinetobacter sp. ATCC
27244]
Length = 230
Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats.
Identities = 74/229 (32%), Positives = 113/229 (49%), Gaps = 8/229 (3%)
Query: 1 MSL-GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+L + Q +IE + +R SV L+AVSK S+ +R GQ F EN LQ
Sbjct: 1 MNLLQQQRQHVLMQIEQACQHVQRDLKSVQLLAVSKTHPSQSLRELYLAGQRSFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L+ +++ FIG +Q NK + FD + V R A LS + + +
Sbjct: 61 EALGKIEELQD-LEIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLIIAERLSNQRLDGQQA 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM-----GNPKPHF 174
L + +QVN + K G PN+ + V + L + GLM IP + K F
Sbjct: 120 LNICLQVNIDGQDSKDGCEPNEVAELVEQISRLPNLRLRGLMVIPAPDNVAAFADAKTLF 179
Query: 175 YLLSEI-ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + A++ LSMGM+ D + AIA+G+T VR+G+ +FG+R +
Sbjct: 180 DQVKSLHAQQQDWDTLSMGMSADLDAAIAAGSTMVRVGTALFGKRDYSS 228
>gi|167762344|ref|ZP_02434471.1| hypothetical protein BACSTE_00698 [Bacteroides stercoris ATCC
43183]
gi|167699987|gb|EDS16566.1| hypothetical protein BACSTE_00698 [Bacteroides stercoris ATCC
43183]
Length = 222
Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats.
Identities = 71/232 (30%), Positives = 114/232 (49%), Gaps = 26/232 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++ D V LVAVSK ++ I A S GQ +F E+K+QE
Sbjct: 1 MSIAENIKQVLSEL----------PDGVRLVAVSKFHPNEAIEEAYSAGQRVFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D++ FIG LQ+NK+ IV +I V K + ++ + K R +
Sbjct: 51 MTAKYESLPK--DIEWHFIGHLQTNKIKYIVPYVTLIHGVDSYKLLTEINRQAAKAGRTV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPK---PHFY 175
+Q++ E K G ++ ++ + ++ + + GLM + N + F
Sbjct: 109 NCLLQLHIAQEESKFGFSFDECREMLAGDEWKKLGNVRICGLMGMATNTDNIEQIKAEFR 168
Query: 176 LLSEIARECKLT---------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ +E K T +LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 169 SLNNFFQEAKATWFSNAEWFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGER 220
>gi|159042598|ref|YP_001531392.1| alanine racemase domain-containing protein [Dinoroseobacter shibae
DFL 12]
gi|157910358|gb|ABV91791.1| alanine racemase domain protein [Dinoroseobacter shibae DFL 12]
Length = 218
Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats.
Identities = 88/219 (40%), Positives = 126/219 (57%), Gaps = 6/219 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +I +A A R ++L+AVSK+ ++ L+ G ++ EN++QE
Sbjct: 1 MGVSE----ITARIGAAARKAGRDPAEITLIAVSKVQPLDRVEAVLAEGHRVYGENRVQE 56
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW R+++ + L IG LQSNK V LFD I TV R K A L+ ++ +
Sbjct: 57 AQGKWPAFREKYSGIDLHLIGPLQSNKTRPAVELFDAIHTVDRAKLARRLADHAQERGQS 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+++QVNTG E QK+G ++ V CR L ++GLMCIPP P HF LL++
Sbjct: 117 PDIFVQVNTGDETQKAGCALSEVDALVTECRALD-LPLKGLMCIPPIDEEPSLHFALLAK 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A LT LSMGM+ DFE AIA GAT +R+GS IFG+R
Sbjct: 176 LAARNGLTGLSMGMSGDFESAIAQGATHIRVGSAIFGDR 214
>gi|296114825|ref|ZP_06833474.1| hypothetical protein GXY_03573 [Gluconacetobacter hansenii ATCC
23769]
gi|295978639|gb|EFG85368.1| hypothetical protein GXY_03573 [Gluconacetobacter hansenii ATCC
23769]
Length = 295
Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats.
Identities = 87/221 (39%), Positives = 126/221 (57%), Gaps = 1/221 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + +I N+A A R ++LVAVSK ++ AL GQ+ F EN++QEA
Sbjct: 73 DIATALATVRARIANAARSAGRDPSDITLVAVSKFHPRARVVAALRAGQMTFGENRVQEA 132
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ LR +W D++L IG LQ+NK + V + D+IE++ R ++ + R
Sbjct: 133 ADKFPSLRAQWPDLRLNIIGGLQTNKAYDAVRIADMIESLDRATLCDAIARAADRVGRLP 192
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ +QVNTG E QKSG+ + F+ ++ V GLMCIPP +P PHF L+ +
Sbjct: 193 RLLVQVNTGDETQKSGVAVEEADAFITAAIARFGDAVAGLMCIPPVDQDPTPHFRTLATM 252
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
A L +SMGM+ DFE AI +GAT VR+GS IFG RP +
Sbjct: 253 AGRHGLGVISMGMSADFEQAIVAGATHVRVGSAIFGPRPTR 293
>gi|192288719|ref|YP_001989324.1| alanine racemase domain protein [Rhodopseudomonas palustris TIE-1]
gi|192282468|gb|ACE98848.1| alanine racemase domain protein [Rhodopseudomonas palustris TIE-1]
Length = 219
Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats.
Identities = 93/207 (44%), Positives = 128/207 (61%), Gaps = 1/207 (0%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE- 71
+I + A+R + V+L+AVSK +++ IR LS GQ +F EN++QEAK KW L E
Sbjct: 13 EIACACKDARRERSEVTLIAVSKTFEAEAIRPVLSAGQRVFGENRVQEAKGKWPALVDEY 72
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
+L IG LQSNK + V LF I +V R+ LS + + R + +++Q+NTG E
Sbjct: 73 PGTELHLIGPLQSNKAKDAVGLFGAIHSVDRDSLCEALSKVLPQAGRKVELFVQINTGEE 132
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSM 191
QK+GI P F++ CR+++ L + GLMCIPP P PHF L ++IA+ L KLSM
Sbjct: 133 PQKAGIAPQDADAFLVACRERWGLTISGLMCIPPVDEAPAPHFALCAKIAKRNGLAKLSM 192
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DF AI GAT VR+GS IFG R
Sbjct: 193 GMSADFATAIQFGATHVRVGSAIFGHR 219
>gi|313667381|ref|YP_004047665.1| hypothetical protein NLA_0230 [Neisseria lactamica ST-640]
gi|313004843|emb|CBN86268.1| conserved hypothetical protein [Neisseria lactamica 020-06]
Length = 234
Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 104/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AVSK S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGRKPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSRQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + L V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNLVVRGLMCVAKANSSEAELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|150390564|ref|YP_001320613.1| alanine racemase domain-containing protein [Alkaliphilus
metalliredigens QYMF]
gi|149950426|gb|ABR48954.1| alanine racemase domain protein [Alkaliphilus metalliredigens QYMF]
Length = 231
Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats.
Identities = 69/231 (29%), Positives = 114/231 (49%), Gaps = 13/231 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +L +I+ +A+ ++ + V L+AV+K VD ++ + G ENK+QE
Sbjct: 1 MSIEARLNTTLDRIKEAAVRGEQKHEEVRLIAVTKTVDIDVMQQLIDLGVRDMGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L + V+ IG LQ NKV I+ D I ++ A + + K +R +
Sbjct: 61 LTRKYEALGNK--VKWHMIGHLQRNKVKYIIDKVDFIHSLDSYALALEIEKQAGKINRVI 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
IQVN E K G+ P T+ + + + + GLM + P + NP+ +F L
Sbjct: 119 ECLIQVNISGEESKYGLTPKATEGLLEKIKDLSHVQIVGLMTMAPYVDNPEETRMYFRDL 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + + LSMGMT DF++AI G+ VR+G+ I GER
Sbjct: 179 KILSSTLEKKYGPTATMKYLSMGMTNDFQIAIEEGSNLVRVGTAILGERNY 229
>gi|298370551|ref|ZP_06981866.1| pyridoxal phosphate enzyme, YggS family [Neisseria sp. oral taxon
014 str. F0314]
gi|298281161|gb|EFI22651.1| pyridoxal phosphate enzyme, YggS family [Neisseria sp. oral taxon
014 str. F0314]
Length = 231
Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 101/230 (43%), Gaps = 9/230 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +I + A R V LVAV K + IR + GQ F EN +Q
Sbjct: 1 MSVLQQNYHNVLAQIAGAEASAGRSAGEVRLVAVGKTFPAGDIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E +K L D+ IG +QSNK + + T+ R KTA LS + +
Sbjct: 61 EWYEKTEDLADLSDIVWHIIGDVQSNKTKFVAERAHWVHTIGRLKTARRLSAQRPSEMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
L V I+VN E K G+ P++ + L + GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPDEAVALACEVAKLPNLKMRGLMCVAKADAGEAELREAFGR 180
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + E LSMGM+ D ++A+A GAT VRIGS IFG R
Sbjct: 181 MRALLAELNAAGVAADVLSMGMSGDMKIAVACGATHVRIGSAIFGRRDYS 230
>gi|114767095|ref|ZP_01445978.1| alanine racemase domain protein [Pelagibaca bermudensis HTCC2601]
gi|114540748|gb|EAU43814.1| alanine racemase domain protein [Roseovarius sp. HTCC2601]
Length = 217
Score = 268 bits (685), Expect = 6e-70, Method: Composition-based stats.
Identities = 89/215 (41%), Positives = 127/215 (59%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L ++++ + A RP+ SV L+AVSK+ +++ L G +F ENK+QEA+ KW
Sbjct: 3 LTDIRERVAKAEAKAGRPEGSVELIAVSKVQPIERVEAVLEQGHRLFGENKVQEAQGKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L++ ++ V + IG LQ+NK + + LF I V R K A+ L+ + +++Q
Sbjct: 63 ALKERFEGVAVHLIGPLQTNKARQAMELFSAIHAVDRPKLANTLARLAQEMGHCPDLFVQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI+P F+ R L ++GLMCIPP P HF LL++IA
Sbjct: 123 VNTGEEPQKAGILPADADAFIKEVRGLD-LPLKGLMCIPPVEETPSLHFALLAKIAERNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L LSMGM+ DFE AI+ GAT VR+GS IFGER
Sbjct: 182 LEGLSMGMSSDFEQAISLGATHVRVGSAIFGERDY 216
>gi|312135160|ref|YP_004002498.1| alanine racemase domain-containing protein [Caldicellulosiruptor
owensensis OL]
gi|311775211|gb|ADQ04698.1| alanine racemase domain protein [Caldicellulosiruptor owensensis
OL]
Length = 238
Score = 268 bits (685), Expect = 6e-70, Method: Composition-based stats.
Identities = 72/230 (31%), Positives = 112/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++ +IE + + + R VSL+ +K V+ I++A G IF EN++QE
Sbjct: 12 LKKNIEDIMNRIEKACLRSGRNPSEVSLLGATKGVNVDTIKLANQLGLKIFGENRVQEFL 71
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L ++ FIG LQ+NK+ I +I ++ + L K + V
Sbjct: 72 PKFQVLP---YLEWHFIGRLQTNKIKYIYDKVSLIHSIDSPQQIDELEKRCAKAGKACNV 128
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
I++N G E K G+ + D + + ++G M IPP + K +F ++ E
Sbjct: 129 LIEINIGGEESKGGVSVEKVDDLIEKISNCSHIILKGFMTIPPIEDDDKKLRWYFRMMKE 188
Query: 180 IAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
I K+ LSMGM+ DFE+AI GAT VRIG+ IFGERP +
Sbjct: 189 IFEKYKKLNYNNVKIEVLSMGMSNDFEVAIEEGATLVRIGTKIFGERPKK 238
>gi|291287269|ref|YP_003504085.1| alanine racemase domain protein [Denitrovibrio acetiphilus DSM
12809]
gi|290884429|gb|ADD68129.1| alanine racemase domain protein [Denitrovibrio acetiphilus DSM
12809]
Length = 229
Score = 268 bits (685), Expect = 6e-70, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 12/228 (5%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC-GQVIFAENKLQEAK 62
++L+ + +E + + R D V++VAVSK + I A G I+ EN++QEA
Sbjct: 3 KDRLENIIKDVEEAKKRSGRTHD-VTIVAVSKRFPLEDIENAYDTTGHTIYGENRIQEAL 61
Query: 63 KKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L K DVQ+ FIG +Q+NKV + + F +I +V EK A + K+ R
Sbjct: 62 DKSASLMKTRPDVQVHFIGHIQTNKVKYLKNNFALIHSVDSEKLAEFMQKHFEKEDRVQD 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLS 178
V +QVN ++ KSG R L++ GLM +PP + + + +F +
Sbjct: 122 VLVQVNIAHDENKSGTGEEDAFQLCDFIRSCPNLHLRGLMMMPPLVDDVEDNRCYFTRMK 181
Query: 179 EIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ +C + LSMGM+ D+++A+ G+T VR+G+ +FG R
Sbjct: 182 KMFDKCNDIKGYNIDTLSMGMSGDYQVAVEEGSTMVRVGTALFGHRQY 229
>gi|293394484|ref|ZP_06638780.1| YggS family pyridoxal phosphate enzyme [Serratia odorifera DSM
4582]
gi|291422949|gb|EFE96182.1| YggS family pyridoxal phosphate enzyme [Serratia odorifera DSM
4582]
Length = 235
Score = 268 bits (685), Expect = 6e-70, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 107/231 (46%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + +I+ +A+ R + VSL+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDVRGRIDAAAVNCARAPEEVSLLAVSKTKPVAAIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKW---IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K L ++ FIG LQSNK + FD TV R + A LS + +
Sbjct: 63 VDKIRHFAALPDGAGLEWHFIGPLQSNKSRLVAEHFDWCHTVDRLRIAQRLSDQRPAELP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQ+N E KSGI Q +L + G+M IP + +
Sbjct: 123 PLNVLIQINISDEQSKSGIELAQLPLLAQAVAALPRLTLRGVMAIPAPESDFPRQLAVFR 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A ++ LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 183 QMAAAFQQLQQDYPQVDTLSMGMTDDMVAAIAAGSTLVRIGTAIFGARDYS 233
>gi|254429950|ref|ZP_05043657.1| conserved hypothetical protein TIGR00044 [Alcanivorax sp. DG881]
gi|196196119|gb|EDX91078.1| conserved hypothetical protein TIGR00044 [Alcanivorax sp. DG881]
Length = 229
Score = 267 bits (684), Expect = 6e-70, Method: Composition-based stats.
Identities = 72/226 (31%), Positives = 105/226 (46%), Gaps = 9/226 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L ++I + R SV L+AVSK + ++ GQ F EN LQ
Sbjct: 1 MTDVKSPLLHIDEQINALCARSGRDPHSVQLLAVSKTRTADELAQLADQGQRHFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L+ + FIG +QSNK +I + FD + +V R K A LS +
Sbjct: 61 EALDKIAALQGR-GLVWHFIGPIQSNKTRDIAAHFDWVHSVDRLKVARRLSEQRGPDLPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP--PAMGNPKPHFYLL 177
L V +QVN E KSG+ + L + GLM IP + F L
Sbjct: 120 LNVCLQVNVDDEASKSGVPLAGVAELAEQIEALPNLRLRGLMAIPRADNTDGNRAAFRQL 179
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + L LSMGM+ D+ +AI GAT +R+G+ +FG R
Sbjct: 180 AMTLSQLRNTMPALDTLSMGMSADYAVAIEEGATVIRLGTALFGPR 225
>gi|298243510|ref|ZP_06967317.1| alanine racemase domain protein [Ktedonobacter racemifer DSM 44963]
gi|297556564|gb|EFH90428.1| alanine racemase domain protein [Ktedonobacter racemifer DSM 44963]
Length = 233
Score = 267 bits (684), Expect = 6e-70, Method: Composition-based stats.
Identities = 73/233 (31%), Positives = 114/233 (48%), Gaps = 16/233 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ +++I +A A+R V+LVAVSK + I++A + G F EN++QEA
Sbjct: 1 MSANIKHVRERIAEAAHTAQREPSEVTLVAVSKTKPLEMIQIAYNLGIRHFGENRVQEAL 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS----- 117
K D+ IG LQ+NK ++VS FD++++V A L + +++
Sbjct: 61 SKIEVFHPA-DLIWHMIGHLQTNKARKVVSAFDIVQSVDSLHLARTLDRLLAEEATDQEP 119
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHF 174
LP+ ++VN E K+G+ D L + GLM + P + + +P F
Sbjct: 120 GRLPILLEVNVASEASKTGVTLTDIPDLARQVATLPHLEIRGLMTVAPQVEDLEEVRPVF 179
Query: 175 YLLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L E + T+LSMGMT D+ +AI GAT VRIG IFG R
Sbjct: 180 RALHEARDHLRDEILGPTCTELSMGMTNDYVIAIEEGATIVRIGRAIFGARAY 232
>gi|291563462|emb|CBL42278.1| pyridoxal phosphate enzyme, YggS family [butyrate-producing
bacterium SS3/4]
Length = 227
Score = 267 bits (684), Expect = 6e-70, Method: Composition-based stats.
Identities = 64/229 (27%), Positives = 113/229 (49%), Gaps = 13/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++++ + + A R V+L++VSK + A G+ + ENK+QE
Sbjct: 1 MSVAENIKNVRERMNAACLRAGRDPKEVTLISVSKTKPVSMLMEAYEAGERDYGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + + D + IG LQ+NKV +++ +I + A + E K+
Sbjct: 61 ITEKRPQIPE--DAKFHMIGHLQTNKVGQVIDKVVLIHSCDSVHLAEKIEKEAAKRDMIA 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V ++VN E K G+ + + + V+G+M I P + N + +F L
Sbjct: 119 NVLLEVNVAREESKFGMFLEDVIPNLKEIQAFPHVCVKGMMTIAPNVENAEENRKYFKEL 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + K ++ LSMGMT DFE+A+ GAT +R+G+GIFG R
Sbjct: 179 YQLYVDIKNKNIDNGTMSVLSMGMTGDFEVAVEEGATMIRVGTGIFGSR 227
>gi|240851274|ref|YP_002972677.1| hypothetical protein Bgr_18910 [Bartonella grahamii as4aup]
gi|240268397|gb|ACS51985.1| hypothetical protein Bgr_18910 [Bartonella grahamii as4aup]
Length = 229
Score = 267 bits (684), Expect = 7e-70, Method: Composition-based stats.
Identities = 99/217 (45%), Positives = 145/217 (66%), Gaps = 1/217 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
Q ++ I + +RP + + L+AVSK V + +R L GQ +FAEN++QEA +K
Sbjct: 13 EAWQNLQKDIAETCQELQRPVEEIELIAVSKTVSAADVRPLLQAGQSLFAENRVQEAAQK 72
Query: 65 WIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W+ LR+++ +++L IG LQSNK +E + +FDVI+TV REK A +L+ EM KQ R LP Y
Sbjct: 73 WLGLRQQFENIKLHLIGPLQSNKAAEAIKIFDVIQTVDREKIAKILAEEMQKQKRHLPCY 132
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVN G E QKSG+ P + FV C+ Y L++ GLM IPP NP P+F LL+++A++
Sbjct: 133 VQVNIGLEPQKSGVAPQEVIPFVNQCKNNYGLDIIGLMGIPPVDENPGPYFALLAKLAKQ 192
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L K+SMGM+ DF+ A+ G+ +RIGS +FG+RP
Sbjct: 193 ADLPKISMGMSSDFKTALQFGSNVLRIGSALFGKRPV 229
>gi|83816855|ref|YP_444832.1| hypothetical protein SRU_0694 [Salinibacter ruber DSM 13855]
gi|83758249|gb|ABC46362.1| conserved hypothetical protein TIGR00044 [Salinibacter ruber DSM
13855]
Length = 233
Score = 267 bits (684), Expect = 7e-70, Method: Composition-based stats.
Identities = 68/234 (29%), Positives = 116/234 (49%), Gaps = 16/234 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ +++ +++I + A R D +++VAVSK + I G F EN+ ++
Sbjct: 1 MT--ERVESIRERIAQACGRAGRSPDEITVVAVSKTFPMQAIASGTGVGLEHFGENRARQ 58
Query: 61 AKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+ K + DV+ +G LQ NK I D + + + A L+ K
Sbjct: 59 LRDKAKARPGAVEGGDVKWHMVGHLQRNKAKFIARHADWFDALDSPRLAEELNKRAAKND 118
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HF 174
R LP +QVN + QK G+ P++T +++ C Q L VEGLM + + +P+ F
Sbjct: 119 RVLPCLVQVNITGDDQKYGLAPSETHEYLDHCAQYDHLAVEGLMALGSFVDDPEDVRGEF 178
Query: 175 YLLSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E+ + ++T+LS+GM+ DFE+AI G+T +R+G+ IFG R
Sbjct: 179 QKMRELFDTYDASGNPQVEMTELSIGMSNDFEVAIEEGSTMIRLGTSIFGPRDY 232
>gi|149909466|ref|ZP_01898121.1| Predicted enzyme with a TIM-barrel fold [Moritella sp. PE36]
gi|149807576|gb|EDM67525.1| Predicted enzyme with a TIM-barrel fold [Moritella sp. PE36]
Length = 231
Score = 267 bits (684), Expect = 7e-70, Method: Composition-based stats.
Identities = 74/229 (32%), Positives = 112/229 (48%), Gaps = 11/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ +LQ +IEN+ + + + ++L+AVSK +++ + GQ F EN LQEA
Sbjct: 3 SISTRLQQVLTQIENATSASCKKRSEINLLAVSKTKPVEQVMAVYALGQRKFGENYLQEA 62
Query: 62 KKKWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K L+++ D++ FIG +QSNK I FD ++++ R K A L+ +
Sbjct: 63 VEKITHLQQDGNYDDIEWHFIGPIQSNKTRPIAEHFDWVQSIDRLKVAQRLNDQRPADMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFY 175
L V IQ+N E KSG Q L + G+M IP + F
Sbjct: 123 KLNVCIQINISAEDSKSGADVQQAHLLAEQVANLPNLVLRGIMAIPEKTADIDKLKSQFS 182
Query: 176 LLSEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L + + ++ LSMGMT D ELAIA G+ VR+G+ IFG R
Sbjct: 183 QLESLYLSLQHQYNQIDTLSMGMTNDMELAIAQGSNMVRVGTAIFGARD 231
>gi|207721650|ref|YP_002252089.1| alanine racemase [Ralstonia solanacearum MolK2]
gi|206586811|emb|CAQ17396.1| ipr001608 alanine racemase, n-terminal protein [Ralstonia
solanacearum MolK2]
Length = 240
Score = 267 bits (684), Expect = 7e-70, Method: Composition-based stats.
Identities = 80/235 (34%), Positives = 113/235 (48%), Gaps = 15/235 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q+I + LA R SV+L+AVSK D+ +R A + GQ +F EN +Q
Sbjct: 1 MSVIAANLQAVRQRITTACTLASRDPASVTLLAVSKTFDADAVRRAHAAGQRLFGENYVQ 60
Query: 60 EAKKKWIPLRKEWD----VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E K L + + FIG LQSNK + FD + +V R K A LS +
Sbjct: 61 EGIAKIDALADLRNGPGAIGWHFIGPLQSNKTRAVAEHFDWVHSVDRLKLAERLSAQRPA 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQ--TKDFVILCRQKYQLNVEGLMCIPPAMGN---P 170
L V +++N + K G+ P+ +L + GLM +P G+
Sbjct: 121 GLPPLQVCLEINISRQASKHGVPPDADGILALARAVAALPRLQLRGLMAVPEPAGDPAAR 180
Query: 171 KPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ F L +A + + LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 181 RAPFAALRTLADRLREAGLPIDTLSMGMSADLEDAIAEGATIVRVGSAIFGARQY 235
>gi|322384109|ref|ZP_08057827.1| hypothetical protein PL1_3547 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321151189|gb|EFX44498.1| hypothetical protein PL1_3547 [Paenibacillus larvae subsp. larvae
B-3650]
Length = 227
Score = 267 bits (684), Expect = 7e-70, Method: Composition-based stats.
Identities = 69/228 (30%), Positives = 110/228 (48%), Gaps = 13/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L ++ ++IE++ + R + V ++AV+K V L G EN+ Q+
Sbjct: 1 MQLQARISQVGKRIEDACRRSGRDPEDVQVIAVTKYVSLSATEQVLEHGLTHIGENRWQD 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
AK KW L + FIG LQ+NKV +++ F I ++ R A ++ + K +
Sbjct: 61 AKGKWEKLGSQG--TWHFIGHLQTNKVKDVIGKFAYIHSLDRMSLALEINKQAEKLQIVV 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
P +IQ+N E K G+ P F + + + GLM + P P +P F L
Sbjct: 119 PCFIQINVSGEESKYGMQPEDLFSFAEQVKPLKYIRIVGLMTMAPYETQPEQTRPVFTGL 178
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ E ++ +LSMGM+ DFE+AI GAT VR+GS + G+
Sbjct: 179 RNLRDELNERKVLPYEVKELSMGMSNDFEVAIEEGATWVRLGSVLVGK 226
>gi|39933362|ref|NP_945638.1| hypothetical protein RPA0285 [Rhodopseudomonas palustris CGA009]
gi|39652987|emb|CAE25729.1| Protein of unknown function UPF0001 [Rhodopseudomonas palustris
CGA009]
Length = 219
Score = 267 bits (684), Expect = 8e-70, Method: Composition-based stats.
Identities = 93/207 (44%), Positives = 131/207 (63%), Gaps = 1/207 (0%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE- 71
+I ++ A+R + V+L+AVSK +++ IR LS GQ +F EN++QEAK KW L E
Sbjct: 13 EIASACKDARRERSEVTLIAVSKTFEAEAIRPVLSAGQRVFGENRVQEAKGKWPVLVDEY 72
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
+L IG LQSNK + ++LFD I +V R+ LS + + R + +++Q+NTG E
Sbjct: 73 PGTELHLIGPLQSNKAKDAIALFDAIHSVDRDSLCEALSKVLPQAGRKVELFVQINTGEE 132
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSM 191
QK+GI P F++ CR+++ L + GLMCIPP P PHF L ++IA+ L KLSM
Sbjct: 133 PQKAGIAPQDADAFLVACRERWGLTISGLMCIPPVDEAPAPHFALSAKIAKRNGLVKLSM 192
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DF AI GAT VR+GS IFG R
Sbjct: 193 GMSADFATAIQFGATHVRVGSAIFGHR 219
>gi|319404815|emb|CBI78416.1| conserved hypothetical protein [Bartonella rochalimae ATCC
BAA-1498]
Length = 226
Score = 267 bits (684), Expect = 8e-70, Method: Composition-based stats.
Identities = 104/224 (46%), Positives = 147/224 (65%), Gaps = 6/224 (2%)
Query: 1 MSLG-----NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAE 55
M++ + + +Q I + RP +++ L+AVSK V + I L G +FAE
Sbjct: 1 MNIPHISSIDAWKNLQQDIAKTCHDYHRPVENIQLIAVSKTVAANNIVPLLQAGHSLFAE 60
Query: 56 NKLQEAKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
N++QEA +KW LR++++ ++L IG LQSNK +E V +FDVI+TV REK A L+ EM
Sbjct: 61 NRVQEAAEKWPSLRQKFNTIELHLIGPLQSNKTAEAVRIFDVIQTVDREKIAKSLAEEMH 120
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
KQ + LP YIQVN G E QKSGI P++ K FV C+ Y L++ GLM IPP NP P+F
Sbjct: 121 KQKKHLPCYIQVNIGLEPQKSGIFPHEVKAFVAQCKNNYGLDIVGLMGIPPIQENPGPYF 180
Query: 175 YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL+++A+E L+KLSMGM+ DF++A+ GA +RIGS +FG R
Sbjct: 181 ALLAKLAKEIGLSKLSMGMSNDFKIALQFGANVLRIGSALFGPR 224
>gi|239909251|ref|YP_002955993.1| hypothetical protein DMR_46160 [Desulfovibrio magneticus RS-1]
gi|239799118|dbj|BAH78107.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 229
Score = 267 bits (684), Expect = 8e-70, Method: Composition-based stats.
Identities = 76/226 (33%), Positives = 104/226 (46%), Gaps = 11/226 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ +L ++I + R +V+LVAVSK D+ + + GQ IF E+ +QEA
Sbjct: 5 TAKTRLTGVLERIGAACRACGRDPSAVTLVAVSKFHDASAVAELAAWGQTIFGESYIQEA 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + FIG LQ NK V FD+I TV + A +L Q
Sbjct: 65 LPKIEAAPA--GLSWHFIGHLQRNKAKLAVGRFDLIHTVDNVELAHILQKRAAAQQLTQA 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V +QVN E QKSG+ P L ++GLM IPP +P +P F L
Sbjct: 123 VCLQVNVAGEAQKSGMAPGGLDALAEAVAACPNLRLDGLMVIPPVFDDPEGARPAFARLR 182
Query: 179 EIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ L LSMGM+ D E A+ GAT VR+G+ +FG R
Sbjct: 183 ELRDALASRLGRPLPVLSMGMSGDLEAAVTEGATHVRVGTDLFGPR 228
>gi|218262755|ref|ZP_03477113.1| hypothetical protein PRABACTJOHN_02792 [Parabacteroides johnsonii
DSM 18315]
gi|218223157|gb|EEC95807.1| hypothetical protein PRABACTJOHN_02792 [Parabacteroides johnsonii
DSM 18315]
Length = 222
Score = 267 bits (684), Expect = 8e-70, Method: Composition-based stats.
Identities = 65/234 (27%), Positives = 108/234 (46%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + K + V+LVAVSK ++ ++ A GQ +F E++ QE
Sbjct: 1 MSITENITRLKASL----------PAGVTLVAVSKFHPAEALQEAYDAGQRVFGESRAQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L D++ FIG LQSNKV +I I ++ K ++ + K R +
Sbjct: 51 LTAKQKVLPS--DIEWHFIGPLQSNKVKDIAPFIHTIHSIDSLKLLQEVNKQAAKHGRIV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILC--RQKYQLNVEGLMCIPPAMGNP---KPHFY 175
V ++++ E K G P++ ++ + L + GLM + N + F+
Sbjct: 109 RVLLEIHVAQEEAKHGFSPDECRELLHSLSPEALPNLRICGLMGMATNTDNTSQIQDEFH 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ ++ E K +LSMGM+ D+ +AI G+T +RIG+ IFGER
Sbjct: 169 KIHKLFTELKSSVFKGDEYFCELSMGMSHDYPIAIREGSTMIRIGTSIFGEREY 222
>gi|195953925|ref|YP_002122215.1| alanine racemase domain protein [Hydrogenobaculum sp. Y04AAS1]
gi|195933537|gb|ACG58237.1| alanine racemase domain protein [Hydrogenobaculum sp. Y04AAS1]
Length = 224
Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats.
Identities = 83/227 (36%), Positives = 128/227 (56%), Gaps = 14/227 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +++ +KIE +A+ A R K+ + L+AV+K V I+ A S G +F ENK+QE
Sbjct: 2 LKERIEEVYEKIEKAALRASRKKEDIKLLAVTKTVPEDVIKEAYSLGIRLFGENKVQEFL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ L K+ D++ FIG++Q+NKV + + +I +V R+ +S M + +
Sbjct: 62 RKYEAL-KDLDIEWHFIGAIQTNKVKYLKNKVKLIHSVDRKAIVDEISKRME----HIDI 116
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
I+VN G E KSG+ N K+ K +N++GLMCIPP + +P F L
Sbjct: 117 LIEVNVGQESSKSGVEENHLKELTEYVLSKPNINLKGLMCIPPYFEDTEKVRPFFAKLRN 176
Query: 180 IAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + KL +LSMGM+ DFELAI GAT +RIG+ +FG+R
Sbjct: 177 LKEDLEKTFNIKLPELSMGMSHDFELAIEEGATIIRIGTYLFGQRQY 223
>gi|296282181|ref|ZP_06860179.1| hypothetical protein CbatJ_01105 [Citromicrobium bathyomarinum
JL354]
Length = 223
Score = 267 bits (683), Expect = 8e-70, Method: Composition-based stats.
Identities = 89/223 (39%), Positives = 123/223 (55%), Gaps = 6/223 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +++I + +AKR + V+L+AVSK ++I L GQ +F EN++QE
Sbjct: 1 MDSAAALTQVEERIVRACTIAKRERKEVNLIAVSKTHPVERIEPLLEAGQRLFGENRVQE 60
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ KW LR+ DV+L IG LQSNK + +LFDVI ++ R L+ K R
Sbjct: 61 AQDKWPELRERFPDVELHLIGQLQSNKAEDAAALFDVIHSLDRPSLLKALAKAYDKLGRR 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+P +IQV+ G E QK G + R+ + + GLMCIPPA P P F LL E
Sbjct: 121 VPCFIQVDVGEEDQKGGCAIADLPALIDQAREAE-IPLLGLMCIPPADKEPAPFFALLGE 179
Query: 180 IAR----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+AR E SMGM+ D+E AI GAT +R+GS +FG R
Sbjct: 180 LARRHEPEPGAWAQSMGMSGDYETAIMLGATHIRVGSALFGAR 222
>gi|294506685|ref|YP_003570743.1| hypothetical protein SRM_00870 [Salinibacter ruber M8]
gi|294343013|emb|CBH23791.1| conserved hypothetical protein [Salinibacter ruber M8]
Length = 252
Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats.
Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 14/233 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +++ +++I + A R D +++VAVSK + I G F EN+ ++
Sbjct: 19 AVTERVESIRERIAQACGRAGRSPDEITVVAVSKTFPMQAIASGTGVGLEHFGENRARQL 78
Query: 62 KKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ K + DV+ +G LQ NK I D + + + A L+ K R
Sbjct: 79 RDKAKARPGAVEGGDVKWHMVGHLQRNKAKFIARHADWFDALDSPRLAEELNKRAAKNDR 138
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFY 175
LP +QVN + QK G+ P++T +++ C Q L VEGLM + + +P+ F
Sbjct: 139 VLPCLVQVNITGDDQKYGLAPSETHEYLDHCAQYDHLAVEGLMALGSFVDDPEDVRGEFQ 198
Query: 176 LLSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E+ + ++T+LS+GM+ DFE+AI G+T +R+G+ IFG R
Sbjct: 199 KMRELFDTYDASGNPQVEMTELSIGMSNDFEVAIEEGSTMIRLGTSIFGPRDY 251
>gi|85704099|ref|ZP_01035202.1| alanine racemase domain protein [Roseovarius sp. 217]
gi|85671419|gb|EAQ26277.1| alanine racemase domain protein [Roseovarius sp. 217]
Length = 217
Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats.
Identities = 85/215 (39%), Positives = 126/215 (58%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K +++ + + A R + V L+AVSK+ +++ L G +F EN++QEA +W
Sbjct: 3 LSEIKARMDKACVAAGRAPEDVDLIAVSKVQPEERVAAVLDQGHRVFGENRVQEAAGRWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++ + + L IG LQSNK + + +F I +V R K A ++ + R +++Q
Sbjct: 63 AFQERYAGIVLHLIGPLQSNKARQAMEMFQAIHSVDRPKIAQAIARLAQEMGRCPDLFLQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P FV CR L V+GLMCIPP P HF LL+++A
Sbjct: 123 VNTGAEPQKAGVLPEAVDGFVAECRALD-LPVKGLMCIPPVEEEPSLHFALLAKMAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ LSMGM+ DFE AIA GAT +R+GS IFG+R
Sbjct: 182 LSGLSMGMSSDFESAIAQGATHIRVGSAIFGDRDY 216
>gi|311108932|ref|YP_003981785.1| alanine racemase [Achromobacter xylosoxidans A8]
gi|310763621|gb|ADP19070.1| alanine racemase, N-terminal domain protein 2 [Achromobacter
xylosoxidans A8]
Length = 280
Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats.
Identities = 73/226 (32%), Positives = 107/226 (47%), Gaps = 11/226 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +I ++A+ A R +V L+ VSK V+ +IR+A G ENKLQE +KW
Sbjct: 34 NLAAVNGRIADAALRAGRDPATVRLLPVSKTVEEARIRLAYEAGCRYLGENKLQEVSRKW 93
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ D++ IG LQ+NK + + + + A L + + R L V++Q
Sbjct: 94 EAMADLTDLRWSVIGHLQTNKAKLVARYAAEFQALDSLRVAEALDRRLQAEGRQLDVFVQ 153
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
VNT E K G+ P +T F+ L V GLM + + F LL +
Sbjct: 154 VNTSGEASKYGLQPEETAAFLRELPAFSGLRVRGLMTLALFSAEAARVRECFVLLRTLRD 213
Query: 183 EC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ L +LSMGM+ D+E+AI GAT VR+G IFG R
Sbjct: 214 QLRQEAPAGIGLDELSMGMSGDYEIAIEEGATVVRVGQAIFGARNT 259
>gi|146296912|ref|YP_001180683.1| alanine racemase domain-containing protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410488|gb|ABP67492.1| alanine racemase domain protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 233
Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 14/228 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++ +++IE + + + R V L+ +K VD IR+A G IF EN++QE
Sbjct: 7 LKKNIEEIQERIEKACLRSGRKSSEVKLLGATKGVDINTIRLANELGIKIFGENRVQEFL 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L + ++ FIG LQ+NK+ I +I ++ + + L K ++ + V
Sbjct: 67 PKYNELPQ---LEWHFIGRLQTNKIKYIYDKVLLIHSIEKVEQIQELEKRCSKAAKKIDV 123
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
I+VN G E K G++P+ ++ + + +N++G M IPP + + +F + E
Sbjct: 124 LIEVNVGGEESKGGVLPDNVEELIENICECKHVNLKGFMTIPPIEDDEKKLRQYFRKMKE 183
Query: 180 IAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
I K+ LSMGM+ DFE+AI GAT VRIG+ +FGERP
Sbjct: 184 IFENYKKLNYNNVKIEVLSMGMSNDFEVAIEEGATLVRIGTKLFGERP 231
>gi|319406300|emb|CBI79937.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
Length = 226
Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats.
Identities = 103/215 (47%), Positives = 143/215 (66%), Gaps = 1/215 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ + +Q+I + RP +++ L+A SK V + I L GQ +FAEN++QEA +K
Sbjct: 10 DAWRNLQQEIAKTCQDYHRPVENIQLIAASKTVSANNIVPLLQAGQFLFAENRVQEAAEK 69
Query: 65 WIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W LR++++ ++L IG LQSNK +E V +FDVI+TV REK A L+ EM KQ + LP Y
Sbjct: 70 WPSLRQKFNTIELHLIGPLQSNKTAEAVKIFDVIQTVDREKIAKKLAEEMHKQKKHLPCY 129
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
IQVN G E QKSGI P + K FV C+ Y L++ GLM IPP NP P+F LL+++A+E
Sbjct: 130 IQVNIGLESQKSGIFPQEVKAFVAQCKNNYGLDIIGLMAIPPIQENPGPYFALLAKLAKE 189
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L KLSMGM+ DF++A+ GA +RIGS +FG R
Sbjct: 190 TGLPKLSMGMSNDFKIALQFGANVLRIGSALFGSR 224
>gi|299133185|ref|ZP_07026380.1| alanine racemase domain protein [Afipia sp. 1NLS2]
gi|298593322|gb|EFI53522.1| alanine racemase domain protein [Afipia sp. 1NLS2]
Length = 229
Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats.
Identities = 95/215 (44%), Positives = 128/215 (59%), Gaps = 1/215 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L +Q+I + A+R + SV L+AVSK D+ I +S GQ +F EN++QEAK K
Sbjct: 15 EGLASVEQEILRACADARRDRASVELIAVSKTFDAAAISPVISAGQRVFGENRVQEAKAK 74
Query: 65 WIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W L ++L IG LQSNK E V LFD I +V R LS E+ + R ++
Sbjct: 75 WPELMAATPGLRLHLIGPLQSNKAREAVMLFDAIHSVDRPSICEALSKEIKSRERNPLLF 134
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
Q+NTG E QK+G++P + F+ CR +Y L + GLMCIPP P PHF L ++IA+
Sbjct: 135 AQINTGEESQKAGVIPQEADSFLAACRDRYGLTISGLMCIPPVDEAPAPHFALTAKIAKR 194
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DF +AI GAT +R+GS IFG R
Sbjct: 195 NGLKLLSMGMSADFAVAIQFGATHIRVGSAIFGHR 229
>gi|322436846|ref|YP_004219058.1| alanine racemase domain protein [Acidobacterium sp. MP5ACTX9]
gi|321164573|gb|ADW70278.1| alanine racemase domain protein [Acidobacterium sp. MP5ACTX9]
Length = 235
Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats.
Identities = 77/235 (32%), Positives = 110/235 (46%), Gaps = 13/235 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L +I + A R V+L+AVSKM + A + GQ +F EN++QE
Sbjct: 1 MSIAENLAHLHDQILAACARANRNPADVALMAVSKMHPVDLLLEAHAAGQRLFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K D+ + IG LQSNK + LF I+TV K A L+ + L
Sbjct: 61 WQGKSEIAGTLEDLDMHLIGPLQSNKSTRAAELFHSIDTVDSLKLAQRLNAAAGALGKKL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP-------AMGNPKPH 173
P+YI+V E K G+ P + L GLM +PP A +P+
Sbjct: 121 PIYIEVKLSPEESKHGLAPADLPALIEALPSLTHLRPTGLMTVPPWPADIAQAGDEARPY 180
Query: 174 FYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER-PCQT 222
F L + + + LT LS+GM+ DF AI G+T +RIG+ IFG+R P
Sbjct: 181 FRELRRLRDQSQRTIPTLTGLSIGMSNDFAAAIEEGSTCIRIGTAIFGKRAPASA 235
>gi|258404223|ref|YP_003196965.1| alanine racemase domain-containing protein [Desulfohalobium
retbaense DSM 5692]
gi|257796450|gb|ACV67387.1| alanine racemase domain protein [Desulfohalobium retbaense DSM
5692]
Length = 235
Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats.
Identities = 78/228 (34%), Positives = 116/228 (50%), Gaps = 10/228 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++Q K+ + +A A R V+LVAVSK + I + GQ F EN +QEA
Sbjct: 8 AERVQEIKETMAAAARAADRDPAEVTLVAVSKYQPIEAIAAVHAAGQTHFGENYIQEALD 67
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K +Q FIG LQ NK + FD++ TV + A +L + + +
Sbjct: 68 KQDQ-CDISPIQWHFIGHLQRNKAKFVPGRFDLVHTVDSVRLAQMLDKKAAEAGVVQAIL 126
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QV+ E QK+G+ P ++ + Q L ++G M +PP +P +P F L E+
Sbjct: 127 LQVSLAGEEQKAGLAPEALEETLDTVGQLPHLQLQGFMTMPPYFNDPERVRPLFCRLREL 186
Query: 181 ARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
E + L LSMGM+ DFE+AIA GAT VR+G+ IFG RP ++
Sbjct: 187 RDEAQNQLGRELPHLSMGMSGDFEVAIAEGATLVRVGTRIFGPRPQKS 234
>gi|84515047|ref|ZP_01002410.1| alanine racemase domain protein [Loktanella vestfoldensis SKA53]
gi|84511206|gb|EAQ07660.1| alanine racemase domain protein [Loktanella vestfoldensis SKA53]
Length = 217
Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats.
Identities = 91/213 (42%), Positives = 122/213 (57%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +I + A RP V+L+AVSK+ + ++ L G +F ENK+QEA KW
Sbjct: 3 LADIQDRIAAACAKAGRPLQDVTLIAVSKVQPNARVAAVLDQGHRVFGENKVQEAAGKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+ +D + L IG LQ+NK V L I T+ R K A +L+ + +++Q
Sbjct: 63 MFRESYDGIALHLIGPLQTNKAKAAVELAQAIHTLDRPKLAQVLARLAQESGACPDLFVQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P FV R L + GLMCIPP P HF LL+++A
Sbjct: 123 VNTGEEPQKAGVLPADVDAFVAEARALD-LPIAGLMCIPPVDEEPSLHFALLAKMAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LT LSMGM+ DFE AIA GAT VRIG+ IFGER
Sbjct: 182 LTGLSMGMSGDFESAIALGATHVRIGAAIFGER 214
>gi|329896504|ref|ZP_08271562.1| hypothetical protein IMCC3088_2174 [gamma proteobacterium IMCC3088]
gi|328921721|gb|EGG29094.1| hypothetical protein IMCC3088_2174 [gamma proteobacterium IMCC3088]
Length = 231
Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats.
Identities = 78/225 (34%), Positives = 114/225 (50%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +++ +IE +A LA R D ++L+AVSK ++ I A +CG F EN LQEA
Sbjct: 5 TIASQISKVLTRIEGAASLASRRSDEITLIAVSKTKPAEAIEAAAACGLQHFGENYLQEA 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L E D+ FIG +QSNK I FD + +V R K A LS + L
Sbjct: 65 LEKIETLH-ELDLTWHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSDQRPAHLGPLN 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
+ +QVN E KSG+ +Q + + + G+M IP +P ++
Sbjct: 124 ICLQVNISNEDTKSGVSADQAPELAKAITTLPNIRLRGVMTIPKPSDDPAEQAAAFEKVV 183
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+L LSMGM++D E AIA+G+T VRIG+ IFG R
Sbjct: 184 TLFNTLRHTNPELDILSMGMSQDLEAAIAAGSTMVRIGTDIFGAR 228
>gi|187929987|ref|YP_001900474.1| alanine racemase domain-containing protein [Ralstonia pickettii
12J]
gi|187726877|gb|ACD28042.1| alanine racemase domain protein [Ralstonia pickettii 12J]
Length = 238
Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats.
Identities = 79/233 (33%), Positives = 114/233 (48%), Gaps = 15/233 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q+I + LA R V+L+AVSK D+ +R A + GQ +F EN +Q
Sbjct: 1 MSVIAANLQAVRQRITTACTLASRDAAGVTLLAVSKTFDADAVRAAHAAGQRLFGENYVQ 60
Query: 60 EAKKKWIPLRK----EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E K L ++ FIG LQSNK + FD + ++ R K A LS +
Sbjct: 61 EGIAKIDALADLRTGADPIRWHFIGPLQSNKTRAVAEQFDWVHSIDRLKIAERLSAQRPN 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--- 170
L V +++N + K G++P ++ +L + GLM +P +P
Sbjct: 121 TLPPLQVCLEINISRQASKHGLLPDFDEVLAVARAVSALPRLQLRGLMAVPEPSDDPAAQ 180
Query: 171 KPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ F L +A + L LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 181 RKPFADLRALADRLRETGIPLDTLSMGMSADLEDAIAEGATIVRVGSAIFGAR 233
>gi|228472644|ref|ZP_04057404.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga gingivalis
ATCC 33624]
gi|228276057|gb|EEK14813.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga gingivalis
ATCC 33624]
Length = 243
Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats.
Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 13/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + LQ + +I+ + R V L+ +K V ++I+ AL+ G + AENK+QE
Sbjct: 3 TIIHNLQHVQARIDKACQAVGRDPKEVKLLLATKTVTPERIQQALAAGYTLIAENKVQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFL 120
K+K+ L+ FIG LQ+NK+ +I+ +E++ R A L ++ + R +
Sbjct: 63 KEKYEALKATPHTN-HFIGHLQTNKIKDILKYDVSCVESLDRYDLAEKLHQKLSQAGREM 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
V+IQVNT E K G+ P + Q L++ GLM I + F LL
Sbjct: 122 DVFIQVNTSGEESKFGVAPEEALALTQQVAQLPTLHIRGLMTIGLFSAEEDKVRKCFQLL 181
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I ++ + +LSMGM+ D E+AIA GAT VR+G+ IFG+R
Sbjct: 182 KSIQQQIFALNLPDVQPHELSMGMSGDLEVAIAEGATIVRVGTAIFGQR 230
>gi|83855262|ref|ZP_00948792.1| alanine racemase domain protein [Sulfitobacter sp. NAS-14.1]
gi|83843105|gb|EAP82272.1| alanine racemase domain protein [Sulfitobacter sp. NAS-14.1]
Length = 217
Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats.
Identities = 91/215 (42%), Positives = 121/215 (56%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +I + A R SV L+AVSK+ ++ L G F EN++QEA+ KW
Sbjct: 3 LHDITSRIAKAEADAGRTPGSVQLIAVSKVQPDTRVAAVLDEGHRYFGENRVQEAEGKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++++D V L IG LQSNK + LFDVI T+ R K A + + R +++Q
Sbjct: 63 AFQQQYDGVGLHLIGPLQSNKARSAMELFDVIHTLDRPKLAQTFARLAQELGRCPDMFVQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P F+ C+ L V GLMCIPP HF LL++IA
Sbjct: 123 VNTGEEAQKAGVLPADADAFIKECQSLD-LPVRGLMCIPPVDEEAALHFALLAKIAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 182 VGDLSMGMSSDFEKAIALGATHVRVGSAIFGERSA 216
>gi|134294804|ref|YP_001118539.1| alanine racemase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134137961|gb|ABO53704.1| alanine racemase domain protein [Burkholderia vietnamiensis G4]
Length = 232
Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats.
Identities = 81/231 (35%), Positives = 109/231 (47%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I ++A A R +VSL+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLDSVHRRIADAARAAGRDPATVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L ++ FIG LQSNK + FD + +V R K A LS + Q
Sbjct: 61 ESIDKIDALADLRSALEWHFIGPLQSNKTRAVAERFDWVHSVDRLKIAQRLSEQRPPQLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V IQVN E KSG+ P + L + GLM IP G+
Sbjct: 121 PLNVCIQVNISGEESKSGVAPADVAELARAVAALPALRLRGLMAIPEPAGDTDAQRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 181 ALHALFDTLRAHGLALDTLSMGMSADLEAAVLEGATIVRVGTAIFGARDYS 231
>gi|262379205|ref|ZP_06072361.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|262298662|gb|EEY86575.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
Length = 236
Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 107/230 (46%), Gaps = 11/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I ++ A R ++V L+AVSK + +R GQ F EN LQ
Sbjct: 6 MNKLQDARDQVLAQIREASHKAGRADETVQLLAVSKTHSAGVLREMYQAGQRSFGENYLQ 65
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA +K L+ D++ FIG +Q NK + FD + V R A LS + +Q
Sbjct: 66 EALEKIHSLQDLNDIEWHFIGHVQRNKTKLLAENFDWVHGVDRLIIAERLSAQRPEQRAA 125
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN + K G P Q + V + Q L + GLM IP F +
Sbjct: 126 LNICIQVNIDGQESKDGCTPEQVAELVKMISQLPNLCLRGLMVIPAPGHT--DAFEHTRQ 183
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + LSMGM+ D E A+ +G+T VRIG+ +FG R
Sbjct: 184 LFNQVRTFHAHPQVWDTLSMGMSADLEAAVVAGSTMVRIGTALFGTRDYS 233
>gi|255319900|ref|ZP_05361101.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter
radioresistens SK82]
gi|255303033|gb|EET82249.1| pyridoxal phosphate enzyme, YggS family [Acinetobacter
radioresistens SK82]
Length = 231
Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 107/230 (46%), Gaps = 11/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I ++ A R ++V L+AVSK + +R GQ F EN LQ
Sbjct: 1 MNKLQDARDQVLAQIREASHKAGRADETVQLLAVSKTHSAGVLREMYQAGQRSFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA +K L+ D++ FIG +Q NK + FD + V R A LS + +Q
Sbjct: 61 EALEKIHSLQDLNDIEWHFIGHVQRNKTKLLAENFDWVHGVDRLIIAERLSAQRPEQRAA 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L + IQVN + K G P Q + V + Q L + GLM IP F +
Sbjct: 121 LNICIQVNIDGQESKDGCTPEQVAELVKMISQLPNLCLRGLMVIPAPGHT--DAFEHTRQ 178
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + + LSMGM+ D E A+ +G+T VRIG+ +FG R
Sbjct: 179 LFNQVRTFHAHPQVWDTLSMGMSADLEAAVVAGSTMVRIGTALFGTRDYS 228
>gi|294675817|ref|YP_003576432.1| alanine racemase domain-containing protein [Rhodobacter capsulatus
SB 1003]
gi|294474637|gb|ADE84025.1| alanine racemase domain protein [Rhodobacter capsulatus SB 1003]
Length = 220
Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats.
Identities = 91/215 (42%), Positives = 124/215 (57%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ + +I + A R + +V L+AVSK+ +++ L GQ +F EN +QEA KW
Sbjct: 3 LQEIQTRIAKATRAAGRAEGAVRLIAVSKVQPPERVLAVLDQGQRLFGENYVQEAAGKWP 62
Query: 67 PLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R E V + IG LQ+NK + V LF+ I T+ R A L+ + +++Q
Sbjct: 63 DWRAEFPGVAVHMIGPLQTNKAKQAVELFEAIHTLDRPSLAVKLASLAQARGASPDLFVQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P FV R+ L V GLMCIPP +P PHF +L+ +A
Sbjct: 123 VNTGSEPQKAGVLPEALDAFVAEARRLD-LPVVGLMCIPPEAEDPAPHFAMLAGMAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LT LSMGM+ DFE AIA+GAT VR+GS IFG R
Sbjct: 182 LTGLSMGMSSDFEAAIAAGATHVRVGSAIFGARDY 216
>gi|325335191|gb|ADZ11465.1| Predicted enzyme with a TIM-barrel fold [Riemerella anatipestifer
RA-GD]
Length = 234
Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats.
Identities = 71/230 (30%), Positives = 107/230 (46%), Gaps = 21/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +I +V+LVAVSK + I+ + G +F ENK+QE
Sbjct: 17 MSVEANYSKLISQI----------PKTVNLVAVSKTYPVEDIQKVYNLGHKVFGENKVQE 66
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L D+Q IG LQ+NKV I I++V EK + + K R +
Sbjct: 67 LVAKHTELPS--DIQWHLIGHLQTNKVKYIAPFIHTIQSVDSEKLLQEIDKQAGKHKRLI 124
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ--KYQLNVEGLMCIPPAMGNP---KPHFY 175
+ +QV E K+G+ N+ K+ + +Q + ++GLM + + + F
Sbjct: 125 NILLQVKIAEEDTKTGLEVNEVKELCVKIKQGEFPNIKLQGLMGMATFTDDETQIRREFS 184
Query: 176 LLSEIAREC----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L ++ +L LSMGM+ DF LAI GA S+R+GS IFG R Q
Sbjct: 185 FLKQLYDYLSDSHQLNTLSMGMSGDFPLAIECGANSIRVGSAIFGARNYQ 234
>gi|158320440|ref|YP_001512947.1| alanine racemase domain-containing protein [Alkaliphilus oremlandii
OhILAs]
gi|158140639|gb|ABW18951.1| alanine racemase domain protein [Alkaliphilus oremlandii OhILAs]
Length = 234
Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats.
Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 13/232 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+SL ++ +++I+ +A R + + L+AV+K VD I+ A+ G ENK+QE
Sbjct: 3 LSLEKNIEFVQERIKIAAQKGHRNLEEIQLIAVTKTVDIDVIKQAIELGITHVGENKVQE 62
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + V+ IG LQ NKV I+ D+I ++ + A + + R +
Sbjct: 63 LVRKYDIIG--PVVKWHLIGHLQRNKVKYIIDKVDLIHSLDSYRLAEEIDSRAKEIGRTI 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+QVN E K G+ K + + V GLM + P + N + +F L
Sbjct: 121 ECLLQVNVSGEETKYGVDKEGAKSLIREVAALGNIKVLGLMTMAPYVENQEEARQYFKAL 180
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+++ + LSMGM+ DFE+AI GA VR+GS IFGER
Sbjct: 181 KDLSIEISAMDLENVHMKYLSMGMSNDFEIAIEEGANLVRVGSLIFGERDYS 232
>gi|294009999|ref|YP_003543459.1| hypothetical protein SJA_C1-00130 [Sphingobium japonicum UT26S]
gi|292673329|dbj|BAI94847.1| conserved hypothetical protein [Sphingobium japonicum UT26S]
Length = 248
Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats.
Identities = 90/218 (41%), Positives = 130/218 (59%), Gaps = 2/218 (0%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
N+L + + +A L R D ++L+AVSK + IR ++ GQ +F EN++QEA+
Sbjct: 14 ANRLAGIRAAMGRTASLTGRTADDITLIAVSKTQAADAIRPLIAAGQRVFGENRVQEAES 73
Query: 64 KWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KW LR E D +QL +G LQSNK ++ V+LFDVI ++ R + L+ M R +P
Sbjct: 74 KWPALRDEHDGLQLHLVGQLQSNKAADAVALFDVIHSLDRPSLLTALARAMDAADRRVPC 133
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++QVN G E QK G + R+ + + GLMC+PPA P P F LL+++AR
Sbjct: 134 FVQVNIGAEPQKGGCPIADVPALIRSAREA-GIPLLGLMCVPPADIEPAPFFALLAKMAR 192
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E L LSMGM+ D+E AI GAT +R+G+ +FGERP
Sbjct: 193 EEGLEGLSMGMSGDYETAIMLGATHIRVGTALFGERPA 230
>gi|59802221|ref|YP_208933.1| hypothetical protein NGO1907 [Neisseria gonorrhoeae FA 1090]
gi|194099840|ref|YP_002002975.1| hypothetical protein NGK_2350 [Neisseria gonorrhoeae NCCP11945]
gi|240013042|ref|ZP_04719955.1| hypothetical protein NgonD_00025 [Neisseria gonorrhoeae DGI18]
gi|240081905|ref|ZP_04726448.1| hypothetical protein NgonF_11448 [Neisseria gonorrhoeae FA19]
gi|240114186|ref|ZP_04728676.1| hypothetical protein NgonM_11571 [Neisseria gonorrhoeae MS11]
gi|240116824|ref|ZP_04730886.1| hypothetical protein NgonPID1_11401 [Neisseria gonorrhoeae PID18]
gi|240122235|ref|ZP_04735197.1| hypothetical protein NgonPI_10825 [Neisseria gonorrhoeae PID24-1]
gi|254494791|ref|ZP_05107962.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268598003|ref|ZP_06132170.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268600258|ref|ZP_06134425.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268602502|ref|ZP_06136669.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|293398056|ref|ZP_06642262.1| YggS family pyridoxal phosphate enzyme [Neisseria gonorrhoeae F62]
gi|59719116|gb|AAW90521.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|193935130|gb|ACF30954.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945]
gi|226513831|gb|EEH63176.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268551791|gb|EEZ46810.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268584389|gb|EEZ49065.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268586633|gb|EEZ51309.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|291612002|gb|EFF41071.1| YggS family pyridoxal phosphate enzyme [Neisseria gonorrhoeae F62]
gi|317165308|gb|ADV08849.1| hypothetical protein NGTW08_1894 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 228
Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 105/227 (46%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AVSK S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGREPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSRQRRSLMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
L V ++VN E K G+ P + + + L V GLMC+ A + K F
Sbjct: 121 LQVCVEVNIAGEAAKHGVAPEEAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|49476195|ref|YP_034236.1| hypothetical protein BH15400 [Bartonella henselae str. Houston-1]
gi|49239003|emb|CAF28303.1| hypothetical protein BH15400 [Bartonella henselae str. Houston-1]
Length = 229
Score = 266 bits (682), Expect = 1e-69, Method: Composition-based stats.
Identities = 100/217 (46%), Positives = 141/217 (64%), Gaps = 1/217 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ ++ I + R + + +AVSK V + IR L GQ +FAEN++QEA +K
Sbjct: 13 EAWKNLQKDITKTCKDYHRLAEEIQFIAVSKTVSVENIRPLLQAGQSVFAENRVQEATEK 72
Query: 65 WIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W LR+++ +++L IG LQSNK ++ V +FDVI+TV REK A LS+EM KQ + LP Y
Sbjct: 73 WSVLRQQFKNIELHLIGPLQSNKTAQAVKIFDVIQTVDREKIAKNLSIEMQKQKKTLPCY 132
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
IQVN G E QKSGI P + FV C+ Y L++ GLM IPP NP P+F LL+++A++
Sbjct: 133 IQVNLGLEPQKSGIAPQEVVPFVARCKNHYGLDIIGLMAIPPVEENPGPYFALLAKLAKQ 192
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L KLSMGM+ DF+ A+ G+ +RIGS +FG+RP
Sbjct: 193 ADLQKLSMGMSNDFKTALQFGSNVLRIGSALFGKRPV 229
>gi|326511339|dbj|BAJ87683.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326532008|dbj|BAK01380.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 243
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 78/228 (34%), Positives = 107/228 (46%), Gaps = 16/228 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + + +A R +SV +VAVSK IR G F EN +QE K
Sbjct: 14 LRSVLSRAQQAAARTGRSPESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELIDKAP 73
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FLPV 122
L + D++ FIG+LQSNK + V D++E+V EK A+ L + R L V
Sbjct: 74 QLPE--DIEWHFIGNLQSNKAKALLAGVPNLDMVESVDDEKIANRLDRVVADLGRKPLKV 131
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPH-FYLL--- 177
+QVNT E K G+ P+ + L GLM I + P F L
Sbjct: 132 LVQVNTSGEESKFGVDPSGCVGLAKHVKLSCPNLVFSGLMTIGMLDYSSTPENFKALTSC 191
Query: 178 -SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ E + +LSMGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 192 RKEVCDELGIPEEQCELSMGMSADFEQAIEMGSTNVRVGSTIFGAREY 239
>gi|332799438|ref|YP_004460937.1| hypothetical protein TepRe1_1484 [Tepidanaerobacter sp. Re1]
gi|332697173|gb|AEE91630.1| protein of unknown function UPF0001 [Tepidanaerobacter sp. Re1]
Length = 230
Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats.
Identities = 82/230 (35%), Positives = 122/230 (53%), Gaps = 14/230 (6%)
Query: 1 MSL-GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MSL + K +I+ +A A R +++ +VAV+K + + I+ A+ G V+ EN++Q
Sbjct: 1 MSLLEENIANIKSRIKFAAERAGRNPENIDIVAVTKTIPPEIIQKAVDSGLVLLGENRVQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA+ K + +VQ IG LQ NKV + LF +I+++ A + + +
Sbjct: 61 EARDKKELV--NGNVQWHLIGHLQRNKVKMALGLFSMIQSIDSLPLAEEIQKRAEQIQQT 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ V +QVN G E K G+ P+ TK F+ L V GLM I P NP +P+F
Sbjct: 119 VDVLVQVNIGREKTKYGVDPDNTKSFIEKIALFPNLRVRGLMAIAPFKQNPEDVRPYFRQ 178
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L EI + K + LSMGM+ DFE+A+ GA VRIG+GIFG R
Sbjct: 179 LREIFKNIKQTHIDNVNMEYLSMGMSNDFEVAVEEGANMVRIGTGIFGVR 228
>gi|238026281|ref|YP_002910512.1| Alanine racemase domain-containing protein [Burkholderia glumae
BGR1]
gi|237875475|gb|ACR27808.1| Alanine racemase domain protein [Burkholderia glumae BGR1]
Length = 236
Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats.
Identities = 79/231 (34%), Positives = 113/231 (48%), Gaps = 9/231 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ L +L ++I+++A A R V+L+AVSK ++ +R A + GQ F EN +QE
Sbjct: 2 LDLAARLASVHRRIDDAARSAGRAPGDVALLAVSKTFPAEAVRAAHAAGQRAFGENYVQE 61
Query: 61 AKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+ K L ++ FIG LQSNK + FD + +V R K A L+ + Q
Sbjct: 62 SLDKIAALADLRASLEWHFIGPLQSNKTRAVAERFDWVHSVDRLKIAQRLAEQRPAQLPP 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
L V +QVN E KSG+ P++ L + GLM IP G+ +
Sbjct: 122 LNVCVQVNVSGEATKSGVAPDEVAALAQAVAALPALRLRGLMAIPEPAGDLAAQRAPHRR 181
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L E+ + L LSMGM+ D E A+ GAT VRIG+ IFG R T
Sbjct: 182 LRELYDALRAGGLALDTLSMGMSADLEAAVLEGATIVRIGTAIFGARDYST 232
>gi|307297025|ref|ZP_07576841.1| alanine racemase domain protein [Sphingobium chlorophenolicum L-1]
gi|306877551|gb|EFN08779.1| alanine racemase domain protein [Sphingobium chlorophenolicum L-1]
Length = 243
Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats.
Identities = 91/218 (41%), Positives = 130/218 (59%), Gaps = 2/218 (0%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++L + + +A L+ R D + L+AVSK + IR + GQ +F EN++QEA+
Sbjct: 9 ADRLAQVRDAMGRAARLSGRTADDIRLIAVSKTQGADAIRPLIEAGQRVFGENRVQEAES 68
Query: 64 KWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KW LR+E+ D+ L +G LQSNK + V+LFDVI ++ R + L+ M + +P
Sbjct: 69 KWPGLREEFADLALHLVGQLQSNKAGDAVALFDVIHSLDRPSLLTALAKAMDAAGKRVPC 128
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
YIQVN G E QK G T + R + + GLMC+PPA P P F LL+++AR
Sbjct: 129 YIQVNIGAEEQKGGCAIADTPALIRAARDAD-IPLLGLMCVPPADVEPAPFFALLAKMAR 187
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E L +LSMGM+ DFE AI GAT +R+G+ +FGERP
Sbjct: 188 EEGLERLSMGMSGDFETAIMLGATDIRVGTALFGERPA 225
>gi|288817913|ref|YP_003432260.1| alanine racemase domain protein [Hydrogenobacter thermophilus TK-6]
gi|288787312|dbj|BAI69059.1| alanine racemase domain protein [Hydrogenobacter thermophilus TK-6]
gi|308751511|gb|ADO44994.1| alanine racemase domain protein [Hydrogenobacter thermophilus TK-6]
Length = 223
Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats.
Identities = 81/223 (36%), Positives = 120/223 (53%), Gaps = 13/223 (5%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
KL+ +++++ + A R ++ V L+ SK V +++IR +CG F EN++QE KK
Sbjct: 4 EKLREVEERLQKACERAGRKREEVVLLGASKSVPAQRIREFYACGLSTFGENRVQEFLKK 63
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ L ++ + FIG LQSNKV I+ +I ++ R+ A ++ + V I
Sbjct: 64 YQAL-EDIAIDWHFIGRLQSNKVKYILGKVSLIHSLDRDSLAQEINKRA---NVVQNVLI 119
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA 181
+VN E K GI+P F L V GLMCIPP +P +P+F L E+
Sbjct: 120 EVNVAGEKTKGGIVPENLLAFYQHLLSYKNLRVLGLMCIPPYTEDPEKARPYFAKLRELK 179
Query: 182 REC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ KL LSMGM+ DFE+AI GAT VRIG+ +FGER
Sbjct: 180 EKLESEFLVKLPHLSMGMSTDFEVAIEEGATIVRIGTLLFGER 222
>gi|13473468|ref|NP_105035.1| hypothetical protein mlr4078 [Mesorhizobium loti MAFF303099]
gi|14024217|dbj|BAB50821.1| mlr4078 [Mesorhizobium loti MAFF303099]
Length = 220
Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats.
Identities = 112/211 (53%), Positives = 143/211 (67%), Gaps = 1/211 (0%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
K KI + A+R +V+LVAVSK D+ IR + GQ +F EN++QEA+ KW L
Sbjct: 10 AVKAKIAAAEREARREAGAVTLVAVSKTFDAADIRPVIEAGQRVFGENRVQEAQGKWPDL 69
Query: 69 RKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
++ + D++L IG LQSNK E V+LFDVIETV REK A+ L+ E+ +Q R +Y+QVN
Sbjct: 70 KQAFADIELHLIGPLQSNKAKEAVALFDVIETVDREKIAAELAKEIARQGRAPKLYVQVN 129
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLT 187
TG E QK+GI P FV CR + L +EGLMCIPPA NP PHF LL ++ARE +
Sbjct: 130 TGSEPQKAGIEPRAAIAFVTRCRDVHGLAIEGLMCIPPADENPGPHFALLEKLAREAGVE 189
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
KLSMGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 190 KLSMGMSGDYETAIAFGATSVRVGSAIFGSR 220
>gi|254515818|ref|ZP_05127878.1| pyridoxal phosphate enzyme, YggS family [gamma proteobacterium
NOR5-3]
gi|219675540|gb|EED31906.1| pyridoxal phosphate enzyme, YggS family [gamma proteobacterium
NOR5-3]
Length = 230
Score = 266 bits (681), Expect = 2e-69, Method: Composition-based stats.
Identities = 76/225 (33%), Positives = 110/225 (48%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + Q++ N+ RP SV ++AVSK ++ +R A + G F EN LQEA
Sbjct: 5 SIPANIAKVLQQVSNAVEKYHRPPQSVRVMAVSKTQSAEAVRTAANAGLTDFGENYLQEA 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K ++ + FIG +QSNK I + F + +V REK LS + L
Sbjct: 65 LDKIAA-CEDLGLTWHFIGPIQSNKTRPIATSFHWVHSVDREKILRRLSEQRDANLPALN 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
+ IQVN E KSG+ P + L L + GLM IP A + K L++
Sbjct: 124 ICIQVNVSREASKSGVAPEDLPPLLALTAGLPNLELRGLMAIPAASDDFATQKQACDLMA 183
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ E + L LSMGM+ D E A+A+G+ +RIG+ IFG R
Sbjct: 184 TLFHEAQSQYPSLDTLSMGMSADLEAAVAAGSNMLRIGTAIFGAR 228
>gi|326526139|dbj|BAJ93246.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats.
Identities = 78/228 (34%), Positives = 107/228 (46%), Gaps = 16/228 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + + +A R +SV +VAVSK IR G F EN +QE K
Sbjct: 14 LRSVLSRAQQAAARTGRSPESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELIDKAP 73
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FLPV 122
L + D++ FIG+LQSNK + V D++E+V EK A+ L + R L V
Sbjct: 74 QLPE--DIEWHFIGNLQSNKAKALLAGVPNLDMVESVDDEKIANRLDRVVADLGRKPLKV 131
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPH-FYLL--- 177
+QVNT E K G+ P+ + L GLM I + P F L
Sbjct: 132 LVQVNTSGEESKFGVDPSGCVGLAKHVKLSCPNLVFSGLMTIGMLDYSSTPENFKALTSC 191
Query: 178 -SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ E + +LSMGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 192 RKEVCDELGIPEEQCELSMGMSADFEQAIEMGSTNVRVGSTIFGAREY 239
>gi|197106974|ref|YP_002132351.1| predicted enzyme with a TIM-barrel fold [Phenylobacterium zucineum
HLK1]
gi|196480394|gb|ACG79922.1| predicted enzyme with a TIM-barrel fold [Phenylobacterium zucineum
HLK1]
Length = 220
Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats.
Identities = 99/214 (46%), Positives = 129/214 (60%), Gaps = 2/214 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+I +A R V+LVAVSK + I L+ GQ +F EN++QEA +W
Sbjct: 8 YADVVARIARAAQACGRDPAEVTLVAVSKQQPWEAIEPVLAAGQKVFGENRVQEAMARWE 67
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ + L IG LQ+NK E V+ FDVIE++ R K A L+ ++ KQ R +Y+QV
Sbjct: 68 --GRAEGLTLHLIGPLQTNKAKEAVAFFDVIESLDRGKLARALAEQVQKQGRTPRLYVQV 125
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL 186
NTG E QK+G++P + F+ CR Y L VEGLMCIPPA P PHF LL++IA L
Sbjct: 126 NTGEEPQKAGVVPAEADGFIAACRGDYGLQVEGLMCIPPAAEPPGPHFALLAKIAARNGL 185
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
KLSMGM+ DFE AI GATSVR+GS +FG R
Sbjct: 186 AKLSMGMSDDFETAIRFGATSVRVGSAVFGARSA 219
>gi|83721068|ref|YP_441835.1| hypothetical protein BTH_I1288 [Burkholderia thailandensis E264]
gi|167580664|ref|ZP_02373538.1| hypothetical protein BthaT_21093 [Burkholderia thailandensis TXDOH]
gi|167618767|ref|ZP_02387398.1| hypothetical protein BthaB_20827 [Burkholderia thailandensis Bt4]
gi|257138004|ref|ZP_05586266.1| hypothetical protein BthaA_02119 [Burkholderia thailandensis E264]
gi|83654893|gb|ABC38956.1| conserved hypothetical protein TIGR00044 [Burkholderia
thailandensis E264]
Length = 232
Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats.
Identities = 77/228 (33%), Positives = 112/228 (49%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L +L +++I+ +A A R +V+L+AVSK + +R A + GQ F EN +QE+
Sbjct: 3 DLAARLASVQRRIDEAARAAGREPRAVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQES 62
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L +++ FIG LQSNK + FD + T+ R K A L+ + L
Sbjct: 63 IDKIDSLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLAEQRPAHLPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---YLL 177
V +QVN E KSG+ P+ + L + GLM IP +P+ L
Sbjct: 123 NVCVQVNISGEASKSGVAPSDAAELARAIAALPALRLRGLMAIPEPAADPEAKRAPHRAL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + + L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 183 HALFEQLRADGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDY 230
>gi|88859059|ref|ZP_01133700.1| hypothetical protein PTD2_08644 [Pseudoalteromonas tunicata D2]
gi|88819285|gb|EAR29099.1| hypothetical protein PTD2_08644 [Pseudoalteromonas tunicata D2]
Length = 244
Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats.
Identities = 74/227 (32%), Positives = 107/227 (47%), Gaps = 9/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L +I + ++P SVSL+AVSK ++ I A G F E+ +QEA
Sbjct: 14 TIAERLNSAYARIAQAEKNHQKPAKSVSLLAVSKTKPAQLIIDAYHAGHRKFGESYVQEA 73
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K + D++ FIG +QSNK I F ++++ R K A L+ + L
Sbjct: 74 VEKIQQIPFN-DIEWHFIGPIQSNKTKAIAEHFSWVQSIERPKIAERLNQQRPTNLPPLN 132
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
V IQVN E KSG Q QL + GLM IP + S++
Sbjct: 133 VLIQVNISGEQSKSGCNLADVAALSAHISQSKQLVLRGLMAIPAPSDDQAQLIASFSQLK 192
Query: 181 -------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
A+ + LSMGM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 193 TCFDTLKAQYPSIDTLSMGMSADVEAAIAAGSTMVRIGTDIFGAREY 239
>gi|163743400|ref|ZP_02150780.1| alanine racemase domain protein [Phaeobacter gallaeciensis 2.10]
gi|161383394|gb|EDQ07783.1| alanine racemase domain protein [Phaeobacter gallaeciensis 2.10]
Length = 218
Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats.
Identities = 92/216 (42%), Positives = 124/216 (57%), Gaps = 2/216 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ + +I + A RPK S L+AVSK+ ++++ L G F EN++QEA KW
Sbjct: 3 LQDIQARIHIAEENAGRPKGSAKLIAVSKVQPNERVEAVLEEGHRCFGENRVQEAVGKWP 62
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ D+ L IG LQSNK + + LF I T+ R K A L+ + +++Q
Sbjct: 63 DFAMRYSDLDLHLIGPLQSNKARQAMELFQSIHTLDRPKLAKALARLAQELGHCPKLFVQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI P + F+ C+ L +EGLMCIPPA P HF LL +IA
Sbjct: 123 VNTGEEPQKAGIPPREADAFIRECQDMD-LIIEGLMCIPPADEEPSLHFSLLGKIAVRNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L+ LSMGM+ DFE A+A GAT VR+GS IFG R +
Sbjct: 182 LSGLSMGMSGDFETAVALGATHVRVGSAIFGARAYE 217
>gi|163756167|ref|ZP_02163282.1| hypothetical protein KAOT1_06507 [Kordia algicida OT-1]
gi|161323779|gb|EDP95113.1| hypothetical protein KAOT1_06507 [Kordia algicida OT-1]
Length = 222
Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats.
Identities = 71/232 (30%), Positives = 109/232 (46%), Gaps = 22/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +K+Q ++QK+ V+LVAVSK ++ A + GQ +F ENK+QE
Sbjct: 1 MSITSKIQEYQQKL----------PTHVTLVAVSKTKPISDLQEAYTAGQRVFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW L K D+ IG +Q NKV + D+I V K ++ + K +R +
Sbjct: 51 MAEKWEALPK--DISWHMIGHVQRNKVKYMAEFVDLIHGVDSYKLLKEINKQAKKYNRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+Q+ E K G+ + + +Q + + GLM + + + F
Sbjct: 109 NCLLQIKIAEEDSKFGMSVEEATTLLASEEFQQLENVAIVGLMGMATFTDDTSQVQQEFK 168
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L K L +SMGM+ D+ELAI G+T VRIGS IFG R +
Sbjct: 169 NLKTTFDTLKAIHNYLKIISMGMSGDYELAIQEGSTMVRIGSSIFGARNYAS 220
>gi|150025955|ref|YP_001296781.1| hypothetical protein FP1913 [Flavobacterium psychrophilum JIP02/86]
gi|149772496|emb|CAL43979.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
Length = 219
Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats.
Identities = 73/231 (31%), Positives = 105/231 (45%), Gaps = 25/231 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L K I +SV+LVAVSK + A GQ IF ENK+QE
Sbjct: 1 MSIAQNLNKIKASI----------PESVTLVAVSKTKPISDLMEAYQAGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW + K D+Q IG +Q+NKV + +I V K ++ + K R +
Sbjct: 51 MTQKWEVMPK--DIQWHMIGHVQTNKVKFMAEYVSLIHGVDSLKLLEEINKQAKKYDRII 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPK---PHFY 175
+Q+ E K G+ + + + + + + GLM + N F
Sbjct: 109 ACLLQIYIAKEETKFGLDEKELNELLASTEFKSFQNIKIVGLMGMATFTENQNQIKKEFT 168
Query: 176 LLSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L I C+L+ LSMGM+ D++LAI SG+T VRIGS IFG R
Sbjct: 169 HLKSIFDNSKSSSIVNCQLSILSMGMSGDYKLAIESGSTMVRIGSSIFGGR 219
>gi|88801062|ref|ZP_01116610.1| hypothetical protein MED297_19052 [Reinekea sp. MED297]
gi|88776201|gb|EAR07428.1| hypothetical protein MED297_19052 [Reinekea sp. MED297]
Length = 235
Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats.
Identities = 79/229 (34%), Positives = 109/229 (47%), Gaps = 9/229 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+S+ ++L KI + RP+ V+LVAVSK + ++R A G F EN QE
Sbjct: 4 LSVTSRLAQVNAKIHAACTKNDRPESEVTLVAVSKTKPAARVREAWEAGARHFGENYAQE 63
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L+ + Q FIG LQSNK I D + T+ R K A LS + L
Sbjct: 64 LAEKVQELKLDK-AQWHFIGPLQSNKTRLIAEHADWVHTIDRLKIARRLSDQRPPDRAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V IQVN + K+G+ +Q L + GLM I A + E+
Sbjct: 123 NVLIQVNISDDPAKAGVDLSQIAGLADRIATLPNLTLRGLMTITAANLDEATLAAQFREL 182
Query: 181 A--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
T++SMGM++DFELAIA+GAT VR+GS IFG R +
Sbjct: 183 KNAQADLITHHPTCTEVSMGMSQDFELAIANGATMVRVGSDIFGHRAPK 231
>gi|296314878|ref|ZP_06864819.1| pyridoxal phosphate enzyme, YggS family [Neisseria polysaccharea
ATCC 43768]
gi|296838328|gb|EFH22266.1| pyridoxal phosphate enzyme, YggS family [Neisseria polysaccharea
ATCC 43768]
Length = 228
Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 104/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSRQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
L V I+VN E K G+ P + + + L V GLMC+ A + K F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|313203129|ref|YP_004041786.1| alanine racemase domain protein [Paludibacter propionicigenes WB4]
gi|312442445|gb|ADQ78801.1| alanine racemase domain protein [Paludibacter propionicigenes WB4]
Length = 222
Score = 266 bits (680), Expect = 2e-69, Method: Composition-based stats.
Identities = 68/234 (29%), Positives = 106/234 (45%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + +Q + I V LV VSK ++ I A G+ IF E+K+QE
Sbjct: 1 MSIQSNIQSIRTHI----------PSHVRLVCVSKFNPNESILEAYETGERIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D+ FIG LQ+NK+ IV +I V K + + + K + +
Sbjct: 51 LCGKYETLPK--DIVWHFIGHLQTNKIRYIVPFISLIHGVDSYKLLTEIDKQAAKAGKTV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIPPAM---GNPKPHFY 175
+QV+ E K G+ P++ + +Q + + GLM + + F
Sbjct: 109 HCLLQVHIAQEETKFGLSPDELLEMFEAGAWKQLKNIQICGLMGMATYTVNKDQIRREFN 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + + K +LSMGM+ DF++AI G+T VR+GS IFG R
Sbjct: 169 GLKTLFDQVKQQYFSNETSFCELSMGMSDDFQIAIEEGSTLVRVGSSIFGHRNY 222
>gi|117926931|ref|YP_867548.1| alanine racemase domain-containing protein [Magnetococcus sp. MC-1]
gi|117610687|gb|ABK46142.1| alanine racemase domain protein [Magnetococcus sp. MC-1]
Length = 235
Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats.
Identities = 77/230 (33%), Positives = 122/230 (53%), Gaps = 13/230 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L+ ++ + + A R V L+AVSK S + A+ GQ++F EN++QEA
Sbjct: 3 TITQRLETIQEHMVQACQRAGRSPHEVQLMAVSKRQSSSAVSEAIEAGQLLFGENRVQEA 62
Query: 62 KKKWI--PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K+K + Q IG LQ NK+ I LF +++TV A + M + R
Sbjct: 63 KEKQPTVSMPAGVQPQWHMIGPLQKNKIKYIGELFHMVQTVDTLTLAQAIGARMQAEQRQ 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+P+ +QVN G E QK+G+ ++ V Q + ++GLM +PP + +P +P+F
Sbjct: 123 MPILLQVNVGGEAQKNGMTAEALEEQVRHIAQIPGVRIQGLMTVPPYLEDPQQVRPYFRA 182
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +A + + LSMGM+ DF +AI GAT VR+GS +FGER
Sbjct: 183 LYTLANHVQQMRLPGVAMETLSMGMSHDFHVAIEEGATMVRVGSALFGER 232
>gi|90407098|ref|ZP_01215287.1| putative alanine racemase [Psychromonas sp. CNPT3]
gi|90311820|gb|EAS39916.1| putative alanine racemase [Psychromonas sp. CNPT3]
Length = 232
Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 114/231 (49%), Gaps = 13/231 (5%)
Query: 1 MSL-GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M++ + +Q+IE++A+ A R V L+AVSK +I+ A GQ +F EN +Q
Sbjct: 1 MTIIQKNIMHVRQQIEHAAVQAGRTTLDVQLLAVSKTKPVAQIKEAYMAGQRLFGENYVQ 60
Query: 60 EAKKKWIPLRKEW----DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E+ +K ++ + + FIG LQSNK + FD +++V R K A LS +
Sbjct: 61 ESIEKIQLIKDDCSFNDPICWYFIGPLQSNKTRLVAENFDWVQSVDRFKIAQRLSAQRPT 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---P 172
L + +Q+N E KSG Q + L + G+M IP +
Sbjct: 121 NLTPLNICLQINISAEASKSGTTLTQIMELAAQVSLLENLTLRGIMAIPEKTQDQAILSQ 180
Query: 173 HFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L I + + + LSMGM+ D +LAIASG+T VRIG+ IFG R
Sbjct: 181 QFKALHHIYLKLQTLYPEVDTLSMGMSADMQLAIASGSTMVRIGTDIFGRR 231
>gi|42527817|ref|NP_972915.1| hypothetical protein TDE2315 [Treponema denticola ATCC 35405]
gi|41818645|gb|AAS12834.1| conserved hypothetical protein TIGR00044 [Treponema denticola ATCC
35405]
Length = 275
Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats.
Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 12/230 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L+ +++E + R V L+ +K V ++I A G+++ ENK+QE
Sbjct: 33 DIKINLEEVHRRMEKACKACGRDLKEVRLLMATKTVTPERILKAFEYGELLIGENKVQEL 92
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ PL + FIG LQ+NK+ +++ D IE+V R A LS + + + +
Sbjct: 93 CEKYEPLSSVKH-ETHFIGHLQTNKIKDVIKYADCIESVDRLDLAEKLSKRLESEGKTMD 151
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
+ IQVNT E K G P + + L ++GLM I + + F LL
Sbjct: 152 ILIQVNTSQEESKFGCKPEEALALTEKIAKLPCLKIKGLMTIGLFSDDMDKVRLCFKLLQ 211
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+I +E + +SMGMT D E+AI G+T +R+G+ IFG+R
Sbjct: 212 KIRKEITEKNIPNVSMEVVSMGMTGDLEVAIEEGSTLIRVGTAIFGKRNY 261
>gi|313901905|ref|ZP_07835324.1| alanine racemase domain protein [Thermaerobacter subterraneus DSM
13965]
gi|313467846|gb|EFR63341.1| alanine racemase domain protein [Thermaerobacter subterraneus DSM
13965]
Length = 230
Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats.
Identities = 80/231 (34%), Positives = 117/231 (50%), Gaps = 15/231 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ + +I +A A R V+LVAVSK V +R A + G F EN+ QE
Sbjct: 1 MTIAERVAAVRDRIAAAAARAGRDPGEVTLVAVSKTVPVAAMREAYAAGIRDFGENRAQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+ K+ + DV+ F+G LQ+NKV I ++ ++ R A + + R L
Sbjct: 61 ARDKFPAFGE--DVRWHFVGRLQTNKVKYIARHCHLLHSLDRLALAQEVDRRAGRCGRVL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
P ++VN E K+G+ P + F+ L V GLM + P +P +P F L
Sbjct: 119 PCLVEVNVAGEPTKAGLPPEKVVPFLQQVAGMKGLQVVGLMTVAPPTDDPERVRPVFRQL 178
Query: 178 SEIARE----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A E +L LSMGMT DFE+A+ GAT VRIG IFGER
Sbjct: 179 RQLAEEAARQCRGLPGIELRHLSMGMTDDFEVAVEEGATIVRIGRAIFGER 229
>gi|297617004|ref|YP_003702163.1| alanine racemase domain protein [Syntrophothermus lipocalidus DSM
12680]
gi|297144841|gb|ADI01598.1| alanine racemase domain protein [Syntrophothermus lipocalidus DSM
12680]
Length = 233
Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 15/228 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + +++I +A + R + ++LVAVSK VD + I A G F EN++QE
Sbjct: 8 LEQSIAEVRERIRRAAQRSGRQEQEITLVAVSKTVDLETISRAAQLGITHFGENRVQEFL 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RFLP 121
K+ L +Q FIG LQ+NKV +++ +I ++ R + A + + +
Sbjct: 68 PKYKELP---HLQWHFIGHLQTNKVKDVIGKACLIHSLDRWRLAEYIDGKAKLLGLAEVD 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V ++VN E K G++P+ F+ + ++ V GLM + P + +P +P F L
Sbjct: 125 VLLEVNVSGERSKYGLLPSDVPAFLDAVERLERVRVRGLMTVAPQVDDPELARPVFKKLR 184
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I + K + LSMGMT+DFE+A+ G+ VR+G+ IFG R
Sbjct: 185 SIFEDIKKRQYRNTEMLYLSMGMTQDFEVAVEEGSNMVRVGTAIFGAR 232
>gi|218130110|ref|ZP_03458914.1| hypothetical protein BACEGG_01697 [Bacteroides eggerthii DSM 20697]
gi|217987614|gb|EEC53942.1| hypothetical protein BACEGG_01697 [Bacteroides eggerthii DSM 20697]
Length = 222
Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats.
Identities = 71/232 (30%), Positives = 113/232 (48%), Gaps = 26/232 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++ V LVAVSK ++ I A S GQ +F E+K+QE
Sbjct: 1 MSIAENIKKVLDEL----------PQGVQLVAVSKFHPNEAIEEAYSAGQRVFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D++ FIG LQ+NK+ I+ +I V K + ++ + K R +
Sbjct: 51 MTAKYESLPK--DIEWHFIGHLQTNKIKYIIPYVALIHGVDSYKLLTEINKQAAKAERTV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPK---PHFY 175
+Q++ E K G ++ ++ + +Q + + GLM + N + F
Sbjct: 109 NCLLQLHIAQEETKFGFSFDECREMLAANEWKQLKNIRICGLMGMATNTDNTEQIKAEFC 168
Query: 176 LLSEIARECKLT---------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LS +E K T +LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 169 SLSSFFQEVKATWFADAEWFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGER 220
>gi|213963787|ref|ZP_03392036.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga sputigena
Capno]
gi|213953563|gb|EEB64896.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga sputigena
Capno]
Length = 242
Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats.
Identities = 75/229 (32%), Positives = 118/229 (51%), Gaps = 13/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +++ +Q+I + A R + V L+ +K V ++I++AL G + AENK+QE
Sbjct: 3 NILQNIELIQQRIAKACAKAGRKPEEVKLLLATKTVTPERIKIALEAGYTLIAENKVQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFL 120
K+K+ L+ FIG LQ+NK+ EI+ +E+V R A L + + + L
Sbjct: 63 KEKYEALKDTPHTN-HFIGHLQTNKIKEILRYEVSCVESVDRLDLAQKLHNRLASEGKEL 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
++IQVNT E K G P++ D V L+++GLM I + F LL
Sbjct: 122 DIFIQVNTSNEESKFGADPSEVLDLVKQVATLPTLHIKGLMTIGLFSAETEKVRACFQLL 181
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I ++ +LSMGM+ D E AI GAT VR+G+ IFG+R
Sbjct: 182 KRIQQDIIALNLPNVDPKELSMGMSGDLETAIEEGATIVRVGTAIFGQR 230
>gi|78186366|ref|YP_374409.1| hypothetical protein Plut_0478 [Chlorobium luteolum DSM 273]
gi|78166268|gb|ABB23366.1| Protein of unknown function UPF0001 [Chlorobium luteolum DSM 273]
Length = 229
Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats.
Identities = 73/226 (32%), Positives = 111/226 (49%), Gaps = 10/226 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L ++++ ++A A R +V L+AVSK + IR A GQ +F E+ LQE
Sbjct: 4 IASNLLEIRRRVHDAARAAGRDPSAVRLIAVSKTKPAGMIREAFDAGQTLFGESYLQEFL 63
Query: 63 KKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K + ++ FIG LQSNKV ++ +I + + TA LS + +K+
Sbjct: 64 EKCDDAELEGCPLEWHFIGHLQSNKVRSVIGRVSLIHGIDKVSTAEELSKQAVKRGINAD 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSEI 180
+++NT E K G+ P + K + + GLM I P + F L +
Sbjct: 124 YLLEINTSGEATKYGMQPLEAKAAAETLFGLPGITLRGLMTIASPDPSQAETEFRDLRLL 183
Query: 181 ARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K LT+LSMGM+ DFE AI GAT VR+G+ IFG R
Sbjct: 184 LDAIKTQAPHPEELTELSMGMSGDFEAAIRQGATLVRVGTAIFGWR 229
>gi|261365682|ref|ZP_05978565.1| pyridoxal phosphate enzyme, YggS family [Neisseria mucosa ATCC
25996]
gi|288565770|gb|EFC87330.1| pyridoxal phosphate enzyme, YggS family [Neisseria mucosa ATCC
25996]
Length = 231
Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 106/230 (46%), Gaps = 9/230 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L K++I + A V L+AVSK S IR + GQ F EN +Q
Sbjct: 1 MSVLQQNYAEVKRRIAEAEQKAGWQVGEVGLIAVSKTFPSDDIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E +K L D+ IG +QSNK + + T+ R KTA LS + +
Sbjct: 61 EWYEKTETLADLPDIVWHVIGDVQSNKTKFVAERAHWVHTIGRLKTARRLSEQRPSEMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
L V I+VN E K G+ P++ + + + V GLMC+ A + + F
Sbjct: 121 LQVCIEVNIAGEEAKHGVAPDEAVALGVEVAKLPNVVVRGLMCVAKAGSSEAELRHQFQA 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ ++ + LSMGM+ D +A+A GAT VRIGS IFG R +
Sbjct: 181 MQQLLADLNAAGVDADVLSMGMSDDMPVAVACGATHVRIGSAIFGRREQK 230
>gi|255535460|ref|YP_003095831.1| FIG018583: protein of unknown function [Flavobacteriaceae bacterium
3519-10]
gi|255341656|gb|ACU07769.1| FIG018583: protein of unknown function [Flavobacteriaceae bacterium
3519-10]
Length = 234
Score = 265 bits (679), Expect = 3e-69, Method: Composition-based stats.
Identities = 75/211 (35%), Positives = 105/211 (49%), Gaps = 11/211 (5%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+ R D V LVAVSK ++ ++ GQ IF ENK+QE K+ L K D++
Sbjct: 24 EQSARIPDGVELVAVSKTHPAEVVQQVYDLGQRIFGENKVQELIAKYPQLPK--DIKWHI 81
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NKV I D +++V EK + + + K R + V +QV E K G+
Sbjct: 82 IGHLQTNKVKYIAPFVDTVQSVDSEKILNEIDKQAAKCERKINVLLQVKIAEEDTKYGLD 141
Query: 139 PNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAREC----KLTKL 189
Q + L + + + GLM + + + F L + E KLT L
Sbjct: 142 AEQARTLYQNYLDGKYAHVEITGLMGMATFTDDQEQIRAEFRKLKTLFDELSGARKLTTL 201
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERPC 220
SMGM+ D+ELAI GATSVR+GS IFG R
Sbjct: 202 SMGMSGDYELAIECGATSVRVGSAIFGHRQY 232
>gi|308271245|emb|CBX27854.1| UPF0001 protein aq_274 [uncultured Desulfobacterium sp.]
Length = 231
Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats.
Identities = 83/231 (35%), Positives = 124/231 (53%), Gaps = 16/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ K ++ SA+ R +S+ ++AV+K V ++KIR+A+ G I EN +Q+A+
Sbjct: 1 MKERIAEIKNRVIRSALSCGRDPESIRIIAVTKTVTAEKIRMAIESGIQIIGENYIQDAR 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ PL +V FIG LQ+NK V +FD+I TV + A L + K ++ +
Sbjct: 61 EKY-PLLSSNEVPWHFIGHLQTNKAKYAVKMFDLIHTVDSYRLAVELDAQAKKINKVQQI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQVN G E KSGI D + L V+GLM IPP +P +P+F L
Sbjct: 120 LIQVNIGKEKSKSGITQETAFDLIKKIGGLNNLRVKGLMVIPPFYDDPERTRPYFAALRI 179
Query: 180 IA------------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + ++ +LSMGM+ DFE I GAT VRIG+ IFGER
Sbjct: 180 LRDRINSLLEPEDIQNIRMEELSMGMSGDFETGIEEGATLVRIGTAIFGER 230
>gi|325201240|gb|ADY96694.1| conserved hypothetical protein TIGR00044 [Neisseria meningitidis
M01-240149]
Length = 228
Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AVSK S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGREPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|300778396|ref|ZP_07088254.1| YggS family pyridoxal phosphate enzyme [Chryseobacterium gleum ATCC
35910]
gi|300503906|gb|EFK35046.1| YggS family pyridoxal phosphate enzyme [Chryseobacterium gleum ATCC
35910]
Length = 219
Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 109/230 (47%), Gaps = 21/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ K ++ +V LVAVSK + ++ GQ +F ENK+QE
Sbjct: 1 MSIKENYNAIKNQL----------PSTVQLVAVSKTHPASAVQEVYDLGQKVFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L + D+Q IG LQ+NKV I D I++V EK + ++ E K +R +
Sbjct: 51 LMEKAPLLPQ--DIQWHLIGHLQTNKVKYIAPFIDTIQSVDSEKVLAEINKEAGKNNRII 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCR--QKYQLNVEGLMCIPPAMGNP---KPHFY 175
V +QV E K G+ ++ +D R Q + + GLM + + + F
Sbjct: 109 KVLLQVKIAAEESKFGLDISEARDLFGKYRDGQFPNVEITGLMGMATFTDDEQQVRNEFL 168
Query: 176 LLSEIARECK----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+L + E L LSMGM+ DF +AI GA SVR+GS IFG R
Sbjct: 169 ILKGLFDEFNQLKALNTLSMGMSDDFPIAIECGANSVRVGSAIFGRRDYS 218
>gi|317476602|ref|ZP_07935847.1| YggS family pyridoxal phosphate enzyme [Bacteroides eggerthii
1_2_48FAA]
gi|316907198|gb|EFV28907.1| YggS family pyridoxal phosphate enzyme [Bacteroides eggerthii
1_2_48FAA]
Length = 222
Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats.
Identities = 71/232 (30%), Positives = 113/232 (48%), Gaps = 26/232 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++ V LVAVSK ++ I A S GQ +F E+K+QE
Sbjct: 1 MSIAENIKKVLDEL----------PQGVQLVAVSKFHPNEAIEEAYSAGQRVFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D++ FIG LQ+NK+ I+ +I V K + ++ + K R +
Sbjct: 51 MTAKYESLPK--DIEWHFIGHLQTNKIKYIIPYVALIHGVDSYKLLTEINKQAAKAERTV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPK---PHFY 175
+Q++ E K G ++ ++ + +Q + + GLM + N + F
Sbjct: 109 NCLLQLHIAQEETKFGFSFDECREMLAANEWKQFKNIRICGLMGMATNTDNTEQIKAEFC 168
Query: 176 LLSEIARECKLT---------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LS +E K T +LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 169 SLSSFFQEVKATWFADAEWFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGER 220
>gi|300309842|ref|YP_003773934.1| enzyme with a TIM-barrel fold protein [Herbaspirillum seropedicae
SmR1]
gi|300072627|gb|ADJ62026.1| enzyme with a TIM-barrel fold protein [Herbaspirillum seropedicae
SmR1]
Length = 270
Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats.
Identities = 71/226 (31%), Positives = 106/226 (46%), Gaps = 11/226 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L ++I + A RP SV L+ VSK IR+A + G + ENK QEA
Sbjct: 32 RANLAAVHRRIAAACERAGRPASSVRLLPVSKTKPESSIRLAYAAGCCLLGENKPQEACH 91
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
KW + +Q IG LQ+NK + + + + A L + ++ R L V+
Sbjct: 92 KWEATQDLSGLQWSVIGHLQTNKAKLVARFAAEFQALDSLRVAQALERRLQQEGRGLDVF 151
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF------ 174
+QVNT E K G+ P + F+ L + GLM + +P +P F
Sbjct: 152 VQVNTSGEASKYGLAPEEVAPFLRQLHAYPALRLRGLMTLAVFSPDPARVRPCFSLLRNL 211
Query: 175 --YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L ++ +L +LSMGM+ D+E+AI GAT VR+G +FG R
Sbjct: 212 RERLRQDVPAGAQLDELSMGMSGDYEIAIEEGATVVRVGQALFGAR 257
>gi|240017614|ref|ZP_04724154.1| hypothetical protein NgonFA_10711 [Neisseria gonorrhoeae FA6140]
gi|240119053|ref|ZP_04733115.1| hypothetical protein NgonPID_11449 [Neisseria gonorrhoeae PID1]
gi|240126744|ref|ZP_04739630.1| hypothetical protein NgonSK_11130 [Neisseria gonorrhoeae SK-92-679]
gi|240127124|ref|ZP_04739785.1| hypothetical protein NgonS_00445 [Neisseria gonorrhoeae SK-93-1035]
gi|268604767|ref|ZP_06138934.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268685321|ref|ZP_06152183.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268685481|ref|ZP_06152343.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|268588898|gb|EEZ53574.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268625605|gb|EEZ58005.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268625765|gb|EEZ58165.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
Length = 228
Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 104/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SV L+AVSK S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGREPHSVGLIAVSKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSRQRRSLMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
L V ++VN E K G+ P + + + L V GLMC+ A + K F
Sbjct: 121 LQVCVEVNIAGEAAKHGVAPEEAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|313673061|ref|YP_004051172.1| alanine racemase domain protein [Calditerrivibrio nitroreducens DSM
19672]
gi|312939817|gb|ADR19009.1| alanine racemase domain protein [Calditerrivibrio nitroreducens DSM
19672]
Length = 229
Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats.
Identities = 75/227 (33%), Positives = 116/227 (51%), Gaps = 11/227 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+G++++ +K+ +A+ + R D ++LVAVSK ++I A G IF E++LQEA
Sbjct: 2 IGDRIRYITEKMHRAAVKSGRRLDDITLVAVSKTFPVERIIDAYRYGLRIFGESRLQEAS 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ D++ IG +Q+NK+ + F +I +V A ++ R +
Sbjct: 62 GKIEHLKSFPDIKFHMIGHVQTNKIRMLKDYFSLIHSVDSLHLAEKMNSYFYSIHRVQDI 121
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQVN E QK G+ + + + + L V GLM IPP +P + +F +
Sbjct: 122 LIQVNLVNEPQKYGVKIEEFDEMMEKMKDFTCLRVRGLMFIPPFYDDPEMNRDNFRKMKA 181
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ E + LSMGM+ DFE+AI GA VRIGS IFGER
Sbjct: 182 LFDETREKYRKFKEFDILSMGMSDDFEIAIEEGANMVRIGSAIFGER 228
>gi|78059216|gb|ABB17984.1| conserved hypothetical protein [Aggregatibacter aphrophilus]
Length = 234
Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats.
Identities = 70/215 (32%), Positives = 103/215 (47%), Gaps = 11/215 (5%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-EWDVQ 75
+ R + +V L+AVSK + I +A + GQV F EN +QE +K ++ + ++
Sbjct: 18 ACHAVGREQSAVKLLAVSKTKPVEDILIAHAAGQVAFGENYVQEGVEKIQYCQQHDVSLE 77
Query: 76 LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKS 135
FIG LQSNK + FD ++T+ R K A L+ + L V IQ+N E KS
Sbjct: 78 WHFIGPLQSNKTRLVAEYFDWMQTLERAKIADRLNEQRSPYKAPLNVLIQINISQESSKS 137
Query: 136 GIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIAREC-------K 185
GI P+ L + GLM IP + + F + + + +
Sbjct: 138 GIQPSDMLPLAKHIENLPHLRLRGLMAIPEPTNDVAQQEQTFCQMKTLFEQLQQALPNAQ 197
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGMT D + AI G+T VRIG+ IFG R
Sbjct: 198 IDTLSMGMTDDMQSAIKCGSTMVRIGTAIFGTRDY 232
>gi|300115526|ref|YP_003762101.1| alanine racemase domain-containing protein [Nitrosococcus watsonii
C-113]
gi|299541463|gb|ADJ29780.1| alanine racemase domain protein [Nitrosococcus watsonii C-113]
Length = 231
Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats.
Identities = 83/227 (36%), Positives = 114/227 (50%), Gaps = 9/227 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L +I + R + SVSLVA SK IR A+ GQ F EN LQEA
Sbjct: 4 IALQLAEIYTRIAQAERRFGRSEGSVSLVAASKTCPVSAIRAAVVGGQRAFGENYLQEAL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L E ++ FIG +QSNK +I + FD + +V+R K A LS + + L V
Sbjct: 64 PKIKELETE-GLEWHFIGPIQSNKTRDIATHFDWVHSVARLKIAQRLSQQRPPELAPLNV 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSE 179
+QVN E KSG + + + QL++ GLM +P + + F L +
Sbjct: 123 CLQVNISGESSKSGTTTQELAELAAAVTEMPQLSLRGLMTLPALNSDFEAQRRPFRALHQ 182
Query: 180 IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ E + L LSMGMT D E AIA GAT VR+G+ IFG RP +
Sbjct: 183 LWEELRQKGFALDSLSMGMTDDLEAAIAEGATLVRVGTAIFGSRPRK 229
>gi|303258028|ref|ZP_07344037.1| pyridoxal phosphate enzyme, YggS family [Burkholderiales bacterium
1_1_47]
gi|330999444|ref|ZP_08323158.1| pyridoxal phosphate enzyme, YggS family [Parasutterella
excrementihominis YIT 11859]
gi|302859371|gb|EFL82453.1| pyridoxal phosphate enzyme, YggS family [Burkholderiales bacterium
1_1_47]
gi|329574870|gb|EGG56429.1| pyridoxal phosphate enzyme, YggS family [Parasutterella
excrementihominis YIT 11859]
Length = 241
Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats.
Identities = 71/230 (30%), Positives = 99/230 (43%), Gaps = 12/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + KQ + + + R SV L+ VSK + A+ CG F EN +QE
Sbjct: 8 LEERYKRVKQSLADDEMRFGREPGSVFLLPVSKTFGINALEEAVKCGMRAFGENYVQEGC 67
Query: 63 KKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K +K + ++ FIG LQSNK + FD ++TV R K A LS +
Sbjct: 68 EKIEYFKKQHPDLEITWHFIGHLQSNKTRPVAEHFDWVQTVDRLKIAQRLSEQRPADMPP 127
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V I+V+ E KSG P L + G+M IP + L E
Sbjct: 128 LNVLIEVHISDEESKSGCQPADVPALAQAITLLPNLKLRGIMAIPAPSDTEEGKKAPLKE 187
Query: 180 -------IARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E LSMGM+ D A+ G+T VR+GS IFG R
Sbjct: 188 MYAIFLHLRDELNFDIDTLSMGMSSDMAEAVECGSTMVRVGSAIFGPRDY 237
>gi|313207350|ref|YP_004046527.1| alanine racemase domain protein [Riemerella anatipestifer DSM
15868]
gi|312446666|gb|ADQ83021.1| alanine racemase domain protein [Riemerella anatipestifer DSM
15868]
gi|315023245|gb|EFT36255.1| hypothetical protein RAYM_08700 [Riemerella anatipestifer RA-YM]
Length = 218
Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats.
Identities = 71/230 (30%), Positives = 107/230 (46%), Gaps = 21/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +I +V+LVAVSK + I+ + G +F ENK+QE
Sbjct: 1 MSVEANYSKLISQI----------PKTVNLVAVSKTYPVEDIQKVYNLGHKVFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L D+Q IG LQ+NKV I I++V EK + + K R +
Sbjct: 51 LVAKHTELPS--DIQWHLIGHLQTNKVKYIAPFIHTIQSVDSEKLLQEIDKQAGKHKRLI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ--KYQLNVEGLMCIPPAMGNP---KPHFY 175
+ +QV E K+G+ N+ K+ + +Q + ++GLM + + + F
Sbjct: 109 NILLQVKIAEEDTKTGLEVNEVKELCVKIKQGEFPNIKLQGLMGMATFTDDETQIRREFS 168
Query: 176 LLSEIAREC----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L ++ +L LSMGM+ DF LAI GA S+R+GS IFG R Q
Sbjct: 169 FLKQLYDYLSDSHQLNTLSMGMSGDFPLAIECGANSIRVGSAIFGARNYQ 218
>gi|157372264|ref|YP_001480253.1| alanine racemase domain-containing protein [Serratia proteamaculans
568]
gi|157324028|gb|ABV43125.1| alanine racemase domain protein [Serratia proteamaculans 568]
Length = 235
Score = 265 bits (678), Expect = 4e-69, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 105/231 (45%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ + +I +A R + V+L+AVSK I A++ GQ F EN +QE
Sbjct: 3 TIQQNLQDVRNRIAAAAQGCARAPEEVTLLAVSKTKPVAAIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + + + FIG LQSNK + F TV R + AS L+ +
Sbjct: 63 VDKVQHFAAQPEGATLDWHFIGPLQSNKSRLVAENFAWCHTVDRLRIASRLNEQRPADMP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQ+N E KSGI+ + L + GLM IP + + +
Sbjct: 123 PLNVLIQINISDEQSKSGIVLAELPALAEAVAALPNLRLRGLMAIPAPQEDYQSQLAVFG 182
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + ++ LSMGMT D AIA+G+T VRIG+ IFG R
Sbjct: 183 QMRDAFLALQQQYPQVDTLSMGMTDDMTAAIAAGSTMVRIGTAIFGARDYS 233
>gi|227873142|ref|ZP_03991434.1| TIM-barrel fold protein [Oribacterium sinus F0268]
gi|227841036|gb|EEJ51374.1| TIM-barrel fold protein [Oribacterium sinus F0268]
Length = 239
Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats.
Identities = 69/237 (29%), Positives = 111/237 (46%), Gaps = 17/237 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +Q+ ++ I + + R + V L+ VSK + I+ A S G F ENK+QE
Sbjct: 1 MEIE--IQIVRENIRKACERSGRKPEEVLLIGVSKTKPYEAIQEAYSFGIRDFGENKVQE 58
Query: 61 AKKKWIPLRKEWDV-----QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
+ K+ L+++ + IGSLQ NKV + +I ++ A + E K
Sbjct: 59 IRDKFALLQEDSLLLKDAPSFHMIGSLQKNKVKYLPGRVKMIHSIDSLPLALEVEKEYAK 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--- 172
+ V ++VN E KSG + + + C+ + + G M + P NP+
Sbjct: 119 KEELASVLLEVNVAKEESKSGFFLEEVEQALEECKDLPHVKLCGFMTVAPFTENPEENRV 178
Query: 173 HFYLLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
HF L + + L +LSMGM+ D+E+A+ GAT VR+GS IFG R
Sbjct: 179 HFRALKNLLTNMQKKFPALPLKELSMGMSGDYEVAVEEGATMVRVGSFIFGARDYGN 235
>gi|326802033|ref|YP_004319852.1| hypothetical protein Sph21_4672 [Sphingobacterium sp. 21]
gi|326552797|gb|ADZ81182.1| protein of unknown function UPF0001 [Sphingobacterium sp. 21]
Length = 221
Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats.
Identities = 67/232 (28%), Positives = 107/232 (46%), Gaps = 25/232 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L+ K++ V+LVAVSK +I+ A GQ F EN++QE
Sbjct: 1 MSISDNLEKIKKE---------TDSVGVTLVAVSKTKSVTEIQEAYDAGQRTFGENQVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K+ L K D++ IG LQ+NKV + +I +V K ++ + K R +
Sbjct: 52 LRDKYEVLPK--DIEWHMIGHLQTNKVKYLAPFIKLIHSVDSLKLLQEINKQASKHDRII 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+Q+ E K G+ ++ + + + + GLM I N K FY
Sbjct: 110 DCLLQIYIADEETKFGLAYDEVIELLRSDEFSILKNVRIVGLMGIATNTDNEKLIKEEFY 169
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + K +LSMGM+ D+++AI G+T +R+GS IFG R
Sbjct: 170 ELKTLFNGIKASFFRKDDAFKELSMGMSSDYKIAIEQGSTMIRLGSTIFGSR 221
>gi|296534868|ref|ZP_06897198.1| YggS family pyridoxal phosphate enzyme [Roseomonas cervicalis ATCC
49957]
gi|296264804|gb|EFH11099.1| YggS family pyridoxal phosphate enzyme [Roseomonas cervicalis ATCC
49957]
Length = 269
Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats.
Identities = 101/218 (46%), Positives = 138/218 (63%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L+ + +I ++A A RP SV LVAVSK + + AL+ GQ +F EN++QEA
Sbjct: 49 SIADNLKRIQDRIASAAARAGRPAGSVRLVAVSKFHPADSVAEALAAGQALFGENRVQEA 108
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ LR D++L IG+LQ+NK + V + DVIE++ R K A+ L+ M +++R
Sbjct: 109 AGKFPGLRAAHPDLRLHLIGALQTNKARDAVRIADVIESLDRPKLAAALAEAMRREARRP 168
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ +QVN G E QK+GI P DFV CR+ + L VEGLMCIPPA +P PHF +
Sbjct: 169 GLLVQVNIGREPQKAGIDPESLADFVAECREAHGLPVEGLMCIPPAEADPAPHFAAMQAA 228
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A L LSMGM+ DFE AIA GAT VR+G+ IFGER
Sbjct: 229 AARLGLATLSMGMSGDFEAAIAHGATHVRVGTAIFGER 266
>gi|218196101|gb|EEC78528.1| hypothetical protein OsI_18473 [Oryza sativa Indica Group]
gi|222630215|gb|EEE62347.1| hypothetical protein OsJ_17136 [Oryza sativa Japonica Group]
Length = 243
Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats.
Identities = 77/228 (33%), Positives = 110/228 (48%), Gaps = 16/228 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + + +A + R +SV +VAVSK IR G F EN +QE K
Sbjct: 14 LRSVLSRAQQAAARSGRAPESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELIDKAS 73
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FLPV 122
L + D++ FIG+LQSNK + V D++E+V +K A+ L + R L V
Sbjct: 74 QLPE--DIEWHFIGNLQSNKARALLAGVPNLDMVESVDDQKIANRLDRVVADLGRKPLKV 131
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPH-FYLL--- 177
+QVNT E K G+ P+ + + L GLM I + P F L
Sbjct: 132 LVQVNTSGEESKFGVDPSGCVELAKHVKLGCPNLVFSGLMTIGMLDYSSTPENFKALANC 191
Query: 178 -SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ +E + +LSMGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 192 RKEVCKELGIPEEQCELSMGMSADFEQAIEMGSTNVRVGSTIFGAREY 239
>gi|110677463|ref|YP_680470.1| hypothetical protein RD1_0046 [Roseobacter denitrificans OCh 114]
gi|109453579|gb|ABG29784.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 218
Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats.
Identities = 91/219 (41%), Positives = 122/219 (55%), Gaps = 6/219 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL + Q+IE + A R + SV L+AVSK+ ++++ L G F EN++QE
Sbjct: 2 MSLSD----ISQRIEKAVAQAGRDRGSVKLIAVSKVQPNERVEAVLKEGHRCFGENRVQE 57
Query: 61 AKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW R + D V L IG LQ+NK + LF I T+ R K A + +
Sbjct: 58 AAGKWPAFRDDHDGVDLHLIGPLQTNKARQAFDLFQSIHTLDRPKLAKTCARLAQEIGHC 117
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+++QVNTG E QK+G+ P+ F+ CR L V GLMCIPP HF LL++
Sbjct: 118 PELFVQVNTGEEPQKAGVAPSDADAFIAECRALD-LPVRGLMCIPPIDEEASLHFALLAK 176
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IA L LSMGM+ DFE AI+ GAT +R+GS IFG R
Sbjct: 177 IAERNGLAGLSMGMSDDFEKAISFGATHIRVGSAIFGAR 215
>gi|299065758|emb|CBJ36935.1| conserved protein of unknown function, Predicted pyridoxal
phosphate-dependent enzyme [Ralstonia solanacearum
CMR15]
Length = 240
Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats.
Identities = 78/235 (33%), Positives = 113/235 (48%), Gaps = 15/235 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q+I + LA R SV+L+AVSK D+ +R A + GQ +F EN +Q
Sbjct: 1 MSVIAANLQAVRQRITTACTLASRDPASVTLLAVSKTFDADAVRAAHAAGQRLFGENYVQ 60
Query: 60 EAKKKWIPLRKEWD----VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E K L + + FIG LQSNK + FD + ++ R K A LS +
Sbjct: 61 EGTTKTCALTDLRNGPEAIAWHFIGPLQSNKTRAVAEHFDWVHSIDRLKIAERLSAQRPA 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMCIPPAMGN---P 170
L V +++N + K G+ P ++ +L + GLM +P +
Sbjct: 121 TLPPLQVCLEINISRQASKHGVPPDLDEVLPLARAVAALPRLRLRGLMAVPEPADDPAAR 180
Query: 171 KPHFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ F L ++A + LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 181 RAPFAALRDLADRLRAAGLPVDTLSMGMSADLEDAIAEGATIVRVGSAIFGARQY 235
>gi|83747264|ref|ZP_00944306.1| Hypothetical cytosolic protein [Ralstonia solanacearum UW551]
gi|207744253|ref|YP_002260645.1| ipr001608 alanine racemase, n-terminal protein [Ralstonia
solanacearum IPO1609]
gi|83726088|gb|EAP73224.1| Hypothetical cytosolic protein [Ralstonia solanacearum UW551]
gi|206595658|emb|CAQ62585.1| ipr001608 alanine racemase, n-terminal protein [Ralstonia
solanacearum IPO1609]
Length = 240
Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats.
Identities = 80/235 (34%), Positives = 113/235 (48%), Gaps = 15/235 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q+I + LA R SV+L+AVSK D+ +R A + GQ +F EN +Q
Sbjct: 1 MSVIAANLQAVRQRITTACTLASRDPASVTLLAVSKTFDADAVRRAHAAGQRLFGENYMQ 60
Query: 60 EAKKKWIPLRKEWD----VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E K L + + FIG LQSNK + FD + +V R K A LS +
Sbjct: 61 EGIAKIDALADLRNGPGAIGWHFIGPLQSNKTRAVAEHFDWVHSVDRLKLAERLSAQRPA 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQ--TKDFVILCRQKYQLNVEGLMCIPPAMGN---P 170
L V +++N + K G+ P+ +L + GLM +P G+
Sbjct: 121 GLPPLQVCLEINISRQASKHGVPPDADGILALARAVAALPRLQLRGLMAVPEPAGDPAAR 180
Query: 171 KPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ F L +A + + LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 181 RAPFAALRTLADRLREAGLPIDTLSMGMSADLEDAIAEGATIVRVGSAIFGARQY 235
>gi|94496649|ref|ZP_01303225.1| hypothetical protein SKA58_18132 [Sphingomonas sp. SKA58]
gi|94424009|gb|EAT09034.1| hypothetical protein SKA58_18132 [Sphingomonas sp. SKA58]
Length = 246
Score = 264 bits (677), Expect = 4e-69, Method: Composition-based stats.
Identities = 90/218 (41%), Positives = 131/218 (60%), Gaps = 2/218 (0%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+L + + +A L R D + L+AVSK D+ IR ++ GQ +F EN++QE+++
Sbjct: 12 AQRLAAVRDAMRRAARLTDRSADDIRLIAVSKTHDADAIRPLIAAGQRVFGENRVQESQQ 71
Query: 64 KWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KW LR+ + D++L +G LQSNK +E V+LFDVI + R + L+ M R +P
Sbjct: 72 KWPALREAQEDIELHLVGQLQSNKAAEAVALFDVIHGLDRPSLLTALARAMDGAGRRVPC 131
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+IQVN G E QK G T + R + + GLMC+PPA P P F LL+++AR
Sbjct: 132 FIQVNIGAEEQKGGCPIADTPALIAAARDAD-IPILGLMCVPPADVEPAPFFALLAKMAR 190
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E L +LSMGM+ D+E AI GAT +R+G+ +FGERP
Sbjct: 191 EEGLERLSMGMSGDYETAIMLGATDIRVGTALFGERPA 228
>gi|251797863|ref|YP_003012594.1| alanine racemase domain protein [Paenibacillus sp. JDR-2]
gi|247545489|gb|ACT02508.1| alanine racemase domain protein [Paenibacillus sp. JDR-2]
Length = 242
Score = 264 bits (677), Expect = 5e-69, Method: Composition-based stats.
Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 17/233 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L +++ ++++ + + R ++ V+++AV+K V + + A G EN+ Q+A
Sbjct: 8 ALQERIEEVERRVAAACKRSGRSREEVNIIAVTKYVSLETAQAAHQLGLRHLGENRWQDA 67
Query: 62 KKKWIPLRKE------WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K+KW + FIGSLQ+NKV +++ F I ++ R A + +
Sbjct: 68 KEKWEAISDSVTGENGGQAVWHFIGSLQTNKVKDVIGKFTYIHSLDRLSLAQAIDKRASQ 127
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKP 172
+P +QVN E K G+ P Q F+ ++ L + GLM + P +P
Sbjct: 128 LGLTVPCLVQVNVSGEQSKHGLDPEQLPAFLAELKELSSLRIIGLMTMAPYETEAEETRP 187
Query: 173 HFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
F L ++ E +T+LSMGM+ DFE+AI GAT +R+G+ + G+
Sbjct: 188 IFRSLRKLRDEMNERAILAESMTELSMGMSGDFEVAIEEGATWIRLGTILVGK 240
>gi|149372304|ref|ZP_01891492.1| hypothetical protein SCB49_00842 [unidentified eubacterium SCB49]
gi|149354694|gb|EDM43257.1| hypothetical protein SCB49_00842 [unidentified eubacterium SCB49]
Length = 219
Score = 264 bits (677), Expect = 5e-69, Method: Composition-based stats.
Identities = 70/230 (30%), Positives = 103/230 (44%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ ++ + + V+LVAVSK + A GQ IF ENK+QE
Sbjct: 1 MSIQKNIEKYRDLM----------PEGVTLVAVSKTKPVSDLMEAYEAGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + K D+ IG +Q NKV + ++I V K ++ E K +R +
Sbjct: 51 MASKHEEMPK--DIAWHMIGHVQRNKVKYMAPFVNLIHAVDSLKLLKEINKEAAKNNRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGN---PKPHFY 175
+Q+ E K GI + + + + + GLM + + + F
Sbjct: 109 NCLLQIKIAEEDSKFGISKADATALLASEIVQDLKNVKIIGLMGMATFTEDKVQIRSEFK 168
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L E K LT+LSMGM+ DF LAI G+T VRIGS IFGER
Sbjct: 169 SLKEYFNTIKKEHRNLTQLSMGMSGDFTLAIEEGSTMVRIGSSIFGERNY 218
>gi|329922721|ref|ZP_08278273.1| pyridoxal phosphate enzyme, YggS family [Paenibacillus sp. HGF5]
gi|328942063|gb|EGG38346.1| pyridoxal phosphate enzyme, YggS family [Paenibacillus sp. HGF5]
Length = 229
Score = 264 bits (677), Expect = 5e-69, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 110/228 (48%), Gaps = 13/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL ++ +Q+I + + R ++ V+++AV+K V L G + EN+ Q+
Sbjct: 1 MSLKERIDQVEQRITEACARSGRDRNDVNMIAVTKYVSLDMTASVLDHGLLHIGENRWQD 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+ KW L FIG LQ+NKV +++ F I ++ R A L + +
Sbjct: 61 AQAKWNALGSRG--TWHFIGHLQTNKVRDVIDKFQYIHSLDRLSLAHELEKRAAALNLQV 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
+QVN E K G+ P Q +F+ + V GLM + P +P F L
Sbjct: 119 SALMQVNISGEESKYGLPPEQAAEFLKEINSLSHVKVTGLMTMAPYESSAEQTRPVFRGL 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ E LT+LSMGM+ DFE+AI GAT VR+GS + G+
Sbjct: 179 RQLRDELNEQALTAEPLTELSMGMSNDFEVAIEEGATWVRLGSILVGK 226
>gi|240000010|ref|ZP_04719934.1| hypothetical protein Ngon3_11093 [Neisseria gonorrhoeae 35/02]
gi|240122409|ref|ZP_04735365.1| hypothetical protein NgonP_00436 [Neisseria gonorrhoeae PID332]
gi|268595816|ref|ZP_06129983.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268680997|ref|ZP_06147859.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268549205|gb|EEZ44623.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268621281|gb|EEZ53681.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
Length = 228
Score = 264 bits (677), Expect = 5e-69, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 104/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SV L+AVSK S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGREPHSVGLIAVSKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSRQRRSLMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
L V ++VN E K G+ P + + + L V GLMC+ A + K F
Sbjct: 121 LQVCVEVNIAGEAAKHGVAPEEAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQA 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|148555765|ref|YP_001263347.1| alanine racemase domain-containing protein [Sphingomonas wittichii
RW1]
gi|148500955|gb|ABQ69209.1| alanine racemase domain protein [Sphingomonas wittichii RW1]
Length = 221
Score = 264 bits (677), Expect = 5e-69, Method: Composition-based stats.
Identities = 85/213 (39%), Positives = 124/213 (58%), Gaps = 1/213 (0%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L + +I+++A LA R ++ L+A+SK ++ I ++ GQ+ F EN++QEA+ KW
Sbjct: 10 RLADIRARIDHAAALADRDPAAIELIAISKTKPAEAIAPLIAAGQIGFGENRVQEAETKW 69
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ ++L +G LQSNK E V+LFD I +V R L+ M R +IQ
Sbjct: 70 PALREGPSLRLHLVGQLQSNKAKEAVALFDAIHSVDRPSLIEALAKAMDGARRRPDCFIQ 129
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VN G E QK G ++ + R L V GLM +PPA P P+F LL+++A+
Sbjct: 130 VNIGAEEQKGGCAIDELPAILARARDA-GLPVAGLMAVPPADVEPAPYFALLAKLAKRHG 188
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE A+ GAT VRIG+ +FG R
Sbjct: 189 LAGLSMGMSGDFETAVMLGATHVRIGTALFGPR 221
>gi|254476253|ref|ZP_05089639.1| conserved hypothetical protein TIGR00044 [Ruegeria sp. R11]
gi|214030496|gb|EEB71331.1| conserved hypothetical protein TIGR00044 [Ruegeria sp. R11]
Length = 218
Score = 264 bits (677), Expect = 5e-69, Method: Composition-based stats.
Identities = 93/216 (43%), Positives = 122/216 (56%), Gaps = 2/216 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ + +I + A R S L+AVSK+ ++++ L+ G F EN++QEA KW
Sbjct: 3 LQDIQSRIHTAEEKAGRAVGSTQLIAVSKVQPNERVESVLNEGHRCFGENRVQEAAGKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+D + L IG LQ+NK + + LF I TV R K A ++ + ++IQ
Sbjct: 63 DFATRFDGLDLHLIGPLQTNKARQAMELFQNIHTVDRPKLAKTIARLAQELGHCPKLFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI P FV CR L +EGLMCIPPA P HF LL +IA
Sbjct: 123 VNTGEEPQKAGIAPRDADAFVKECRDMD-LVIEGLMCIPPAEEEPSLHFSLLRKIAERNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
LT LSMGM+ DFE A+A GAT VR+GS IFG R +
Sbjct: 182 LTGLSMGMSGDFESAVALGATHVRVGSAIFGARAYE 217
>gi|33599228|ref|NP_886788.1| hypothetical protein BB0239 [Bordetella bronchiseptica RB50]
gi|33575274|emb|CAE30737.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
Length = 250
Score = 264 bits (677), Expect = 5e-69, Method: Composition-based stats.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 12/232 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++L + +I+ + + RP +SV+L+ VSK + IR A + G F ENK QE
Sbjct: 19 SMPHRLAAIQARIKAACERSARPPESVALLPVSKTFPVEAIRHAAALGLRRFGENKTQEI 78
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L D+Q IG LQ+NK ++ ++++ R + A L + ++R L
Sbjct: 79 RHKAPELAD-LDLQWVMIGHLQTNKAKDVARDVAEVQSLDRLELADALQRRLEMEARSLD 137
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI-LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V +QV T E K G+ P F+ L L V+GLM + +P + F LL
Sbjct: 138 VLVQVKTSPEPSKYGLAPELLPGFLRTLVSDFPALRVQGLMTMAVNDEDPQAVRACFRLL 197
Query: 178 SEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
E+ + L +LSMGM+ DFE+AI G+T +RIGS +FG RP
Sbjct: 198 RELRDRARDSVPGVALDRLSMGMSGDFEIAIEEGSTEIRIGSALFGARPASA 249
>gi|317401303|gb|EFV81943.1| hypothetical protein HMPREF0005_01116 [Achromobacter xylosoxidans
C54]
Length = 239
Score = 264 bits (677), Expect = 5e-69, Method: Composition-based stats.
Identities = 78/232 (33%), Positives = 116/232 (50%), Gaps = 15/232 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ +L +Q+I + A R DSV+L+ VSK + IR A++ G F ENK QE
Sbjct: 7 MAI--RLAAIRQRIAQACERAGRAPDSVTLLPVSKTFEVDAIREAMALGLARFGENKTQE 64
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K L + +Q IG LQ+NK + ++++ R A L ++ + R L
Sbjct: 65 LRQKAAALAGQ-GLQWVLIGHLQTNKAKDAARDATELQSLDRIDLAEALHRRLVLEGRTL 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIP---PAMGNPKPHFYL 176
V +QV T E K G+ P+ F+ + L V GLM + P G + F
Sbjct: 124 DVLVQVKTSSEPSKYGMAPSDVSAFLRRIVAEFPTLRVRGLMTMAVNSPDPGEVRACFRS 183
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L E+ + + L +LSMGM+ DFELAI G+T VRIG+ IFG R
Sbjct: 184 LRELRDQLRHEAIEGVSLDRLSMGMSGDFELAIEEGSTEVRIGTAIFGARSY 235
>gi|212704883|ref|ZP_03313011.1| hypothetical protein DESPIG_02950 [Desulfovibrio piger ATCC 29098]
gi|212671725|gb|EEB32208.1| hypothetical protein DESPIG_02950 [Desulfovibrio piger ATCC 29098]
Length = 241
Score = 264 bits (677), Expect = 5e-69, Method: Composition-based stats.
Identities = 73/233 (31%), Positives = 115/233 (49%), Gaps = 13/233 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + +++ + A R + V L+AVSK+ ++ + + GQV F EN +QEA
Sbjct: 6 ALRERYHSVLERLGEAIARAGRKPEEVRLIAVSKLHPAEDVACVAAAGQVDFGENYVQEA 65
Query: 62 KKKWIPL---RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K L + D++ IG +QS K +++ F ++ T+ K A L
Sbjct: 66 LQKRQDLVAQPQCRDIRWHMIGHVQSRKAAQVAGAFALVHTLDSVKLADALEKRAAALGV 125
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMG---NPKPHF 174
PV ++N G E QK+GIM + + L ++GLMC+PP +P+F
Sbjct: 126 VQPVLCEINVGEEPQKAGIMADALPELAEHVLAHCPHLEMQGLMCLPPVFDAGEAARPYF 185
Query: 175 YLLSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + + L LSMGM+ DF A+A GAT VRIG+ IFG RP +
Sbjct: 186 ARLYRLREDMRARTGLPLPHLSMGMSGDFAAAVAEGATLVRIGTDIFGPRPPK 238
>gi|87120925|ref|ZP_01076817.1| Predicted enzyme with a TIM-barrel fold [Marinomonas sp. MED121]
gi|86163763|gb|EAQ65036.1| Predicted enzyme with a TIM-barrel fold [Marinomonas sp. MED121]
Length = 229
Score = 264 bits (677), Expect = 5e-69, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 109/228 (47%), Gaps = 8/228 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ + +I + +R SV L+AVSK I A + GQ +F EN +QE
Sbjct: 1 MAIAENIEKTQAEITSFEQKYQRALGSVKLLAVSKTKPVSAIEEAYAQGQRLFGENYVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L ++ FIG +QSNK + + T+ R K A L+ + L
Sbjct: 61 AADKSQQLTHLKGIEWHFIGPIQSNKTRILAQSMHWVHTLERAKIAQRLNEQRPADLPKL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM-------GNPKPH 173
V IQ+N E KSGI + + V + R + L + GLM IP +P
Sbjct: 121 NVCIQINISGEESKSGISLAELDELVEIVRNQPNLILRGLMAIPAPQVSLADQLATYQPL 180
Query: 174 FYLLSEIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ +A + + LS+GM+ D E AIASG++ VRIG+ IFG R
Sbjct: 181 YEAYHALAESVETVDTLSIGMSGDMEAAIASGSSMVRIGTAIFGARNY 228
>gi|146312996|ref|YP_001178070.1| alanine racemase domain-containing protein [Enterobacter sp. 638]
gi|145319872|gb|ABP62019.1| alanine racemase domain protein [Enterobacter sp. 638]
Length = 233
Score = 264 bits (677), Expect = 5e-69, Method: Composition-based stats.
Identities = 76/229 (33%), Positives = 109/229 (47%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L ++KI +A R + VSL+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAQVREKISAAATRCGRASEDVSLLAVSKTKPASAIAEAIAAGQREFGENYVQEG 62
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K ++ +Q FIG LQSNK + FD TV R + A+ L+ +
Sbjct: 63 VDKIRHFQETGMMGLQWHFIGPLQSNKSRLVAEHFDWCHTVDRLRIATRLNEQRPADKAP 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + L + GLM IP + F + +
Sbjct: 123 LNVLIQINISDENSKSGIALAELDALAAQVAELPGLRLRGLMAIPAPKTEYERQFAVAQQ 182
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFEALKARYVTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|325954051|ref|YP_004237711.1| hypothetical protein Weevi_0414 [Weeksella virosa DSM 16922]
gi|323436669|gb|ADX67133.1| protein of unknown function UPF0001 [Weeksella virosa DSM 16922]
Length = 213
Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats.
Identities = 68/225 (30%), Positives = 107/225 (47%), Gaps = 21/225 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ LQ K+ + ++V+LVAVSK ++I A S GQ +F ENK+QE
Sbjct: 1 MTIAKNLQTIKKTL----------PENVTLVAVSKTHSIEEILEAYSAGQRVFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L K D++ IG LQ NKV + +I V + ++ + K +R +
Sbjct: 51 LTQKQELLPK--DIEWHMIGHLQRNKVKYLAPFVSLIHGVDSLRLLVEINKQAQKNNRII 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV-ILCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
V +Q E K G+ + ++ + ++ + + GLM + + F
Sbjct: 109 KVLLQKYIAEEESKFGMDAEEIEEILSNHAQELSNVEIVGLMGMASFTDQYEIVREEFRT 168
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L + KLT LSMGM+ D+ +AI G+T VRIGS IFG
Sbjct: 169 LKKTFDRLSKNYPKLTILSMGMSGDYPIAIEEGSTMVRIGSAIFG 213
>gi|255577143|ref|XP_002529455.1| proline synthetase associated protein, putative [Ricinus communis]
gi|223531071|gb|EEF32921.1| proline synthetase associated protein, putative [Ricinus communis]
Length = 245
Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats.
Identities = 80/229 (34%), Positives = 113/229 (49%), Gaps = 16/229 (6%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L+ ++ +A A R +SV +VAVSK IR G F EN +QE K
Sbjct: 13 ALRSVMVRVRQAAERAGRRPESVRIVAVSKTKPVSLIRHVYDAGHRCFGENYVQEVVDKA 72
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FLP 121
L + D++ FIG LQSNKV + V +++ V EK A++L + R L
Sbjct: 73 PQLPE--DIEWHFIGHLQSNKVKTLLAGVPNLAMVQGVDNEKVANVLDRVVSTLGRNPLK 130
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIP-PAMGNPKPHFYLLS- 178
V++QVNT E KSGI P+ + + L + GLM I P + +F LS
Sbjct: 131 VFVQVNTSGEASKSGIEPSSCVALAEHVKLRCPNLVLSGLMTIGMPDYTSTPENFRKLSN 190
Query: 179 ---EIARECKL----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ + + +LSMGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 191 CRLEVCKALGMAEDHCELSMGMSGDFEQAIEMGSTNVRVGSTIFGPREY 239
>gi|255554799|ref|XP_002518437.1| proline synthetase associated protein, putative [Ricinus communis]
gi|223542282|gb|EEF43824.1| proline synthetase associated protein, putative [Ricinus communis]
Length = 270
Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats.
Identities = 76/228 (33%), Positives = 109/228 (47%), Gaps = 16/228 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ Q+++ +A + R + +VAVSK I G F EN +QE +K
Sbjct: 41 LRSVLQRVQQAAERSGRGAQQIRVVAVSKTKPVSLIHQVYDAGHRCFGENYVQELVEKAP 100
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FLPV 122
L + D++ FIG+LQSNKV + V V+E+V +K A+ L + R L V
Sbjct: 101 QLPE--DIEWHFIGNLQSNKVKPLLAAVPNLAVVESVDDQKIANHLDRAVGNLGRKPLKV 158
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPH-FYLLS-- 178
+QVNT E K G+ P + + L GLM I + P F L+
Sbjct: 159 LVQVNTSGEESKYGVEPAGCVELAKHVTQSCPNLEFCGLMTIGMLDYSSTPENFKTLANC 218
Query: 179 --EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ + + +LSMGM+ DFE AI G+T+VRIGS IFG R
Sbjct: 219 RSEVCKTLGIPEEQCELSMGMSNDFEQAIEMGSTNVRIGSTIFGPREY 266
>gi|251791951|ref|YP_003006671.1| hypothetical protein NT05HA_0146 [Aggregatibacter aphrophilus
NJ8700]
gi|247533338|gb|ACS96584.1| conserved hypothetical protein [Aggregatibacter aphrophilus NJ8700]
Length = 234
Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats.
Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 11/215 (5%)
Query: 17 SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-EWDVQ 75
++ R + +V L+AVSK + I +A + GQV F EN +QE +K ++ + ++
Sbjct: 18 ASHAVGREQSAVKLLAVSKTKPVEDILIAYAAGQVAFGENYVQEGVEKIQYCQQHDISLE 77
Query: 76 LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKS 135
FIG LQSNK + FD ++T+ R K A L+ + L V IQ+N E KS
Sbjct: 78 WHFIGPLQSNKTRLVAEYFDWMQTLERAKIADRLNEQRPPYKAPLNVLIQINISQEATKS 137
Query: 136 GIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIAREC-------K 185
GI P+ L + GLM IP + + F + + + +
Sbjct: 138 GIQPSDMLTLAKHIENLPHLRLRGLMAIPEPTDDVAQQEQTFCQMKTLFEQLQQALPNAQ 197
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGMT D + AI G+T VRIG+ IFG+R
Sbjct: 198 IDTLSMGMTDDMQSAIKCGSTMVRIGTAIFGKRDY 232
>gi|163857208|ref|YP_001631506.1| hypothetical protein Bpet2896 [Bordetella petrii DSM 12804]
gi|163260936|emb|CAP43238.1| conserved hypothetical protein [Bordetella petrii]
Length = 260
Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats.
Identities = 75/224 (33%), Positives = 105/224 (46%), Gaps = 11/224 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L ++ I + A R V L+ VSK VD +IR+A + G ENK+QEA KW
Sbjct: 19 NLARVREHIAAACQRAGRDPAEVRLLPVSKTVDEARIRLAYAAGCRELGENKVQEAHAKW 78
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ D++ IG LQ+NK + + + + A L + + R L V++Q
Sbjct: 79 EAMADLPDLRWAVIGHLQTNKAKLVARFASEFQALDSLRVAEALDRRLQAEGRALDVFVQ 138
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF-------- 174
VNT E K G+ P Q FV L V GLM + +P +P F
Sbjct: 139 VNTSNEASKFGLPPEQAAAFVRELPAYSSLRVRGLMTLALFSPDPALVRPCFVRLRELRD 198
Query: 175 YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E + +LSMGM+ D+ LAI GAT+VR+G IFG R
Sbjct: 199 RLRQEAPAGIAIDELSMGMSGDYALAIEEGATTVRVGQAIFGAR 242
>gi|332519634|ref|ZP_08396098.1| alanine racemase domain protein [Lacinutrix algicola 5H-3-7-4]
gi|332044193|gb|EGI80387.1| alanine racemase domain protein [Lacinutrix algicola 5H-3-7-4]
Length = 222
Score = 264 bits (676), Expect = 5e-69, Method: Composition-based stats.
Identities = 72/233 (30%), Positives = 106/233 (45%), Gaps = 25/233 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ N L + KQ + + V+LVAVSK + A + GQ IF ENK+QE
Sbjct: 1 MNIQNNLNIIKQSL----------PEQVTLVAVSKTKPVSDLMEAYNAGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + K D+ IG +Q NKV + +I V K ++ + IK R +
Sbjct: 51 MAEKHEQMPK--DITWHMIGHVQRNKVKYMAPFVSLIHGVESFKLLKEINKQAIKHDRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+Q+ E K G+ + D + +N+ G+M + N K F
Sbjct: 109 DCLLQIKIAEEDSKFGMSTQEASDILQSEDFSTLKNINITGVMGMATFTDNQLQIKKEFK 168
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LL + E K L +SMGM+ D++LAI G+T VRIGS IFG R
Sbjct: 169 LLKTVFEELKLLNSKNCNLKTISMGMSGDYKLAIDCGSTMVRIGSSIFGARNY 221
>gi|288959470|ref|YP_003449811.1| hypothetical protein AZL_026290 [Azospirillum sp. B510]
gi|288911778|dbj|BAI73267.1| hypothetical protein AZL_026290 [Azospirillum sp. B510]
Length = 226
Score = 264 bits (676), Expect = 6e-69, Method: Composition-based stats.
Identities = 99/225 (44%), Positives = 140/225 (62%), Gaps = 7/225 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ +L ++ I +A R +V+LVAVSK ++ + AL+ GQ +F EN++QE
Sbjct: 1 MT--ARLDGVRRAIVETATACGRGDGAVTLVAVSKTHPAEAVEEALAAGQRVFGENRVQE 58
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS----LEMIK 115
AK K+ L++ + D++L IG LQ+NKV + V+LFDVI+T+ R K A L+ EM K
Sbjct: 59 AKAKFPALKERFADLELHLIGPLQTNKVKDAVALFDVIQTLDRPKLAEALAAEMAKEMAK 118
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
R I+VNTG E QK+GI P + + F+ CR + L V GLMCIPP P HF
Sbjct: 119 TGRRPRCLIEVNTGEEPQKAGIAPAEVEAFLADCRDRLGLPVTGLMCIPPVDEEPAMHFA 178
Query: 176 LLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LL+E+AR L ++SMGM+ D+E A+ GAT VR+G+ IFG RP
Sbjct: 179 LLAEMARRLDLPEISMGMSGDYETAVRFGATHVRVGTAIFGSRPY 223
>gi|189467061|ref|ZP_03015846.1| hypothetical protein BACINT_03444 [Bacteroides intestinalis DSM
17393]
gi|189435325|gb|EDV04310.1| hypothetical protein BACINT_03444 [Bacteroides intestinalis DSM
17393]
Length = 222
Score = 264 bits (676), Expect = 6e-69, Method: Composition-based stats.
Identities = 66/234 (28%), Positives = 109/234 (46%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + LQ ++ + V LVAVSK ++ I A GQ +F E+K+QE
Sbjct: 1 MNIADNLQQVLNEL----------PEGVRLVAVSKFHPNEAIEEAYRSGQRVFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D++ FIG LQ+NK+ IV +I + K ++ + K + +
Sbjct: 51 MTAKYESLPK--DIEWHFIGHLQTNKIKYIVPYVALIHGIDSYKLLVEVNKQAEKAGKVV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ--KYQLNVEGLMCIPPAMGN---PKPHFY 175
+Q++ E K G + +D + + + GLM + + + F
Sbjct: 109 NCLLQLHIAEEETKFGFSFEECRDMLAEGEWKTLSNIQLCGLMGMATNTDDNEQIEKEFC 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LS +E K +LSMGM+ D+ AIA+G+T +R+GS IFG+R
Sbjct: 169 SLSSFFKEVKDSWFADTEAFRELSMGMSHDYHQAIAAGSTLIRVGSKIFGDRTY 222
>gi|319411450|emb|CBY91865.1| conserved hypothetical protein [Neisseria meningitidis WUE 2594]
Length = 228
Score = 264 bits (676), Expect = 6e-69, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AVSK S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|193215363|ref|YP_001996562.1| alanine racemase domain-containing protein [Chloroherpeton
thalassium ATCC 35110]
gi|193088840|gb|ACF14115.1| alanine racemase domain protein [Chloroherpeton thalassium ATCC
35110]
Length = 229
Score = 264 bits (676), Expect = 6e-69, Method: Composition-based stats.
Identities = 72/229 (31%), Positives = 110/229 (48%), Gaps = 11/229 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L I A R +D V L+A+SK ++ I A GQ F EN +Q
Sbjct: 1 MSAISENLARINDIILKVCENAGRKRDEVKLIAISKRKSAEAILEAYQAGQRYFGENYVQ 60
Query: 60 EAKKKWI-PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E K PL + + F G LQ+NK+ I +++T+ + TA LS K+
Sbjct: 61 EFLDKVEHPLLANLEPEWHFTGHLQTNKIKYIADKVAMVQTIDKFATAEALSKRAEKEGL 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLL 177
+P+ ++VN E K G+MP + + + GLM I P + + F +
Sbjct: 121 IVPILLEVNISNEDSKYGVMPEDLLFETEKIHELPNVAIHGLMTIGSPDLSDVGKEFQQM 180
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + ++ +LSMGM++DF++AI GAT VRIG+ IFGER
Sbjct: 181 RHLLEQIAENSPNPEQVKELSMGMSQDFDIAIEEGATMVRIGTAIFGER 229
>gi|254524687|ref|ZP_05136742.1| pyridoxal phosphate enzyme, YggS family [Stenotrophomonas sp.
SKA14]
gi|219722278|gb|EED40803.1| pyridoxal phosphate enzyme, YggS family [Stenotrophomonas sp.
SKA14]
Length = 257
Score = 264 bits (676), Expect = 6e-69, Method: Composition-based stats.
Identities = 77/229 (33%), Positives = 116/229 (50%), Gaps = 12/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q+I ++ I A R SV L+ VSK VD +IR+A++ G ENK+QEA+
Sbjct: 17 IAANLATVRQRIADACIRAGRDPASVRLLPVSKTVDDARIRMAVAAGCHELGENKVQEAQ 76
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + V IG LQ+NK + + + + A L + + R L V
Sbjct: 77 RKAEAMAD-LGVHWSVIGHLQTNKARYVARFASEFQALDSLRVAETLQQRLQLEDRTLDV 135
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSE 179
++QVNT E K G+ P+ +DFV +L V GLM + P + + F L +
Sbjct: 136 FVQVNTSAEPSKYGLEPDAVEDFVQQLPAFDRLRVRGLMTLAVFTPEVERVRACFVRLRQ 195
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + + L++LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 196 LRDQLQHSAPAGIDLSQLSMGMSGDFEVAIEEGATVVRVGQAIFGARAT 244
>gi|78486175|ref|YP_392100.1| hypothetical protein Tcr_1834 [Thiomicrospira crunogena XCL-2]
gi|78364461|gb|ABB42426.1| Conserved hypothetical protein; UPF0001 member [Thiomicrospira
crunogena XCL-2]
Length = 227
Score = 264 bits (676), Expect = 6e-69, Method: Composition-based stats.
Identities = 73/227 (32%), Positives = 105/227 (46%), Gaps = 14/227 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + Q +++I+++ A R D + L+AVSK + I GQ F EN +QEA
Sbjct: 4 TLIQRYQNVQKRIDDAMQSANR-TDHIQLLAVSKTKPIEDIIALADIGQRAFGENYVQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K D++ FIG +QSNK I + +V R K A LS + L
Sbjct: 63 LDKIAQ---RPDLEWHFIGPIQSNKTKPIAENVQWVHSVDRFKIARRLSEQRPDNLPPLN 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLS 178
+ ++VN E K+G PN+ D + L + GLM IP K F+ +
Sbjct: 120 ILLEVNISNEASKAGFSPNEILDVTKQILELPHLALRGLMAIPAKAYSHDEQKQPFHQMK 179
Query: 179 EIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + LSMGM+ D E AI GAT VRIG+ IFG R
Sbjct: 180 LLLESMQTHFPDQPIDTLSMGMSADLEAAIEEGATIVRIGTDIFGAR 226
>gi|15595591|ref|NP_249085.1| hypothetical protein PA0394 [Pseudomonas aeruginosa PAO1]
gi|218889136|ref|YP_002438000.1| putative PLP dependent enzyme [Pseudomonas aeruginosa LESB58]
gi|254237371|ref|ZP_04930694.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|254243494|ref|ZP_04936816.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|296386893|ref|ZP_06876392.1| putative PLP dependent enzyme [Pseudomonas aeruginosa PAb1]
gi|313111985|ref|ZP_07797772.1| hypothetical protein PA39016_004070007 [Pseudomonas aeruginosa
39016]
gi|141308|sp|P24562|Y394_PSEAE RecName: Full=UPF0001 protein PA0394
gi|9946247|gb|AAG03783.1|AE004476_13 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|454838|gb|AAA25959.1| ORF 6; putative [Pseudomonas aeruginosa PAO1]
gi|126169302|gb|EAZ54813.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126196872|gb|EAZ60935.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|218769359|emb|CAW25119.1| putative PLP dependent enzyme [Pseudomonas aeruginosa LESB58]
gi|310884274|gb|EFQ42868.1| hypothetical protein PA39016_004070007 [Pseudomonas aeruginosa
39016]
Length = 230
Score = 264 bits (676), Expect = 6e-69, Method: Composition-based stats.
Identities = 74/224 (33%), Positives = 97/224 (43%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +I +A A R +V L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAENIAKVAARIREAAQAAGRDPATVGLLAVSKTKPAAAVREAHAAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + FIG +QSNK I F + +V R K A LS + L
Sbjct: 63 LGKQAELADLP-LNWHFIGPIQSNKTRPIAEHFQWVHSVDRLKIAQRLSEQRPAGLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE-- 179
V +QVN E KSG P +Q L + GLM IP +
Sbjct: 122 VCLQVNVSGEASKSGCAPEDLPALAEAVKQLPNLRLRGLMAIPEPTAERAAQHAAFARLR 181
Query: 180 ---IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ L LSMGM+ D E AI GAT VRIG+ +FG R
Sbjct: 182 ELLLDLNLGLDTLSMGMSDDLEAAIGEGATWVRIGTALFGARDY 225
>gi|121633935|ref|YP_974180.1| hypothetical protein NMC0037 [Neisseria meningitidis FAM18]
gi|120865641|emb|CAM09361.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
Length = 228
Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 104/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
L V I+VN E K G+ P + + + L V GLMC+ A + K F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|312889194|ref|ZP_07748751.1| alanine racemase domain protein [Mucilaginibacter paludis DSM
18603]
gi|311298356|gb|EFQ75468.1| alanine racemase domain protein [Mucilaginibacter paludis DSM
18603]
Length = 229
Score = 264 bits (675), Expect = 8e-69, Method: Composition-based stats.
Identities = 68/232 (29%), Positives = 109/232 (46%), Gaps = 25/232 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++ ++I+ S LVAVSK ++ ++ A GQ IF EN +QE
Sbjct: 1 MSIADNIKNLNKEIKLSKA---------KLVAVSKTKPAEDLQEAYDAGQRIFGENMVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L K D+Q IG LQ+NKV I +IE+V K ++ + K R +
Sbjct: 52 LVEKYEKLPK--DIQWHLIGHLQTNKVKYIAPFISLIESVDSLKLLQEINKQAEKNKRVI 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCR--QKYQLNVEGLMCIPPAMGNP---KPHFY 175
+QV E K G+ ++ + + + V GLM I N F+
Sbjct: 110 DCLLQVYIADEETKFGLSYDELIELLRSDEYTALKNIRVVGLMGIATNTDNEKQINDEFH 169
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + K +LSMGM+ D+++A+ G+T +R+GS IFG+R
Sbjct: 170 ELRVLFDGIKVSFFRKDEFFKELSMGMSSDYKIALEQGSTMIRVGSTIFGQR 221
>gi|241664091|ref|YP_002982451.1| alanine racemase domain-containing protein [Ralstonia pickettii
12D]
gi|240866118|gb|ACS63779.1| alanine racemase domain protein [Ralstonia pickettii 12D]
Length = 238
Score = 264 bits (675), Expect = 8e-69, Method: Composition-based stats.
Identities = 81/233 (34%), Positives = 114/233 (48%), Gaps = 15/233 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q+I + LA R V+L+AVSK D+ IR A + GQ +F EN +Q
Sbjct: 1 MSAIVANLQAVRQRITTACTLASRDAAGVTLLAVSKTFDADAIRAAHAAGQRLFGENYVQ 60
Query: 60 EAKKKWIPLRK----EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E K L ++ FIG LQSNK + FD + +V R K A LS +
Sbjct: 61 EGVAKIDALADLRKGTDPIRWHFIGPLQSNKTRAVAEQFDWVHSVDRLKIAERLSAQRPD 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--- 170
L V +++N + K G++P ++ +L + GLM +P +P
Sbjct: 121 TLPPLQVCLEINISRQASKHGLLPDFDEVLAVAQAVLALPRLQLRGLMAVPEPSDDPVAQ 180
Query: 171 KPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ F L +A + L LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 181 RKPFADLRALAGRLREAGIPLDTLSMGMSADLEDAIAEGATIVRVGSAIFGAR 233
>gi|320538009|ref|ZP_08037914.1| pyridoxal phosphate enzyme, YggS family [Treponema phagedenis
F0421]
gi|320145166|gb|EFW36877.1| pyridoxal phosphate enzyme, YggS family [Treponema phagedenis
F0421]
Length = 232
Score = 264 bits (675), Expect = 8e-69, Method: Composition-based stats.
Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ K++I + A R V L+ +K + I A CG+++ ENK+QE
Sbjct: 4 IQQNIEEVKRRIAEACARAGRDPSEVKLLMATKTIAPDWILQAFECGELLIGENKVQELA 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ L + FIG LQ+NK+ +++ D IE+V R A L+ + + + + V
Sbjct: 64 EKYEALSAVPH-RAHFIGHLQTNKIKDVIQYADCIESVDRFDLAEKLARRLRFEGKTIDV 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQVNT E KSG P + + L ++GLM I + + + LL
Sbjct: 123 LIQVNTSAEETKSGCAPEEALSLIKQVSAFPDLRIKGLMTIGLFSSDTEKVRACYRLLKN 182
Query: 180 IAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I +C ++ LSMGM+ DFE+AI G+T VR+G+ IFGER
Sbjct: 183 IQEDCIKLALPNVEMAVLSMGMSGDFEIAIEEGSTEVRVGTSIFGER 229
>gi|300690501|ref|YP_003751496.1| hypothetical protein RPSI07_0829 [Ralstonia solanacearum PSI07]
gi|299077561|emb|CBJ50189.1| conserved protein of unknown function, Predicted pyridoxal
phosphate-dependent enzyme [Ralstonia solanacearum
PSI07]
Length = 240
Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats.
Identities = 81/235 (34%), Positives = 116/235 (49%), Gaps = 15/235 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q+I + LA R SV+L+AVSK D+ +R A + GQ +F EN +Q
Sbjct: 1 MSAIAANLQAVRQRITTACTLASRDPASVTLLAVSKTFDADAVRAAHAAGQRLFGENYVQ 60
Query: 60 EAKKKWIPLRKEWD----VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E K L + + FIG LQSNK + FD + +V R K A LS +
Sbjct: 61 EGLAKINALADLRNGPKAIGWHFIGPLQSNKTRAVAEHFDWVHSVDRLKIAERLSAQRPA 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPN--QTKDFVILCRQKYQLNVEGLMCIPPAMGNP--- 170
L V +++N + K G+ P+ + +L + GLM +P G+P
Sbjct: 121 TLPPLQVCLEINISRQASKHGVPPDLNEVLALARAVAALPRLQLRGLMAVPEPAGDPATR 180
Query: 171 KPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ F L ++A + + LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 181 RAPFAALRDLADRLRETGLPVDTLSMGMSVDLEDAIAQGATIVRVGSAIFGARQY 235
>gi|284050438|ref|ZP_06380648.1| hypothetical protein AplaP_03077 [Arthrospira platensis str.
Paraca]
gi|291569699|dbj|BAI91971.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 223
Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats.
Identities = 70/228 (30%), Positives = 105/228 (46%), Gaps = 21/228 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ + I V LVAV+K V +R+A G F EN++QEA
Sbjct: 4 SIAERIAQIRAAI----------PPEVRLVAVTKTVSVSAMRLAYEAGVRDFGENRVQEA 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L+ D+ IG LQSNK + ++ FD I +V K A L +QSR
Sbjct: 54 EAKQSQLQDLTDINWHLIGHLQSNKAATAIAHFDWIHSVDSLKLAQRLDRLATEQSRCPR 113
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLS 178
+ +QV + K G + + LN++GLM IPP + F
Sbjct: 114 ICLQVKILPDPNKYGWTVPELLADLPQLNVCESLNIQGLMTIPPQGLTENETRSVFEQTR 173
Query: 179 EIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A + K+ +LSMGM+ D+ LA+ +GAT +R G IFG R
Sbjct: 174 QLAAQIEGQNWSNIKMQELSMGMSGDYLLAVEAGATMIRPGQTIFGPR 221
>gi|260441618|ref|ZP_05795434.1| hypothetical protein NgonDG_11132 [Neisseria gonorrhoeae DGI2]
gi|291044992|ref|ZP_06570701.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|291011886|gb|EFE03882.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
Length = 228
Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 105/227 (46%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AVSK S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQADREPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSRQRRSLMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
L V ++VN E K G+ P + + + L V GLMC+ A + K F
Sbjct: 121 LQVCVEVNIAGEAAKHGVAPEEAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|255632027|gb|ACU16366.1| unknown [Glycine max]
Length = 239
Score = 263 bits (674), Expect = 9e-69, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 108/227 (47%), Gaps = 15/227 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +++ +A + R + +VA SK +R G F EN +QE +K
Sbjct: 10 LKAVQDRVQAAAERSGRNVQEIRVVAASKTKSVSALREVYDAGLRCFGENYVQELLQKAP 69
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FLPV 122
L D+Q IG+LQSNKV + V +ETV +K A+ L + R L V
Sbjct: 70 QLPD--DIQWHLIGNLQSNKVKPLIAAVPNLACVETVDDKKIANFLDRAVANVGRKPLKV 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH-FYLL---- 177
++QVNT E K G+ P D V L GLM I + P F L
Sbjct: 128 FVQVNTSGETSKFGVEPALCVDLVKHITNCPNLEFSGLMTIGMLDYSSTPENFETLSNCR 187
Query: 178 SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
SE+ + ++ +LSMGMT DFE AI G+T+VRIG+ IFG R
Sbjct: 188 SEVCKALGISETQCELSMGMTGDFEQAIEMGSTNVRIGTAIFGAREY 234
>gi|94499757|ref|ZP_01306293.1| Predicted enzyme with a TIM-barrel fold protein [Oceanobacter sp.
RED65]
gi|94427958|gb|EAT12932.1| Predicted enzyme with a TIM-barrel fold protein [Oceanobacter sp.
RED65]
Length = 238
Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats.
Identities = 73/225 (32%), Positives = 106/225 (47%), Gaps = 10/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L ++ + + +I ++ K +++V L+AVSK + IR + GQ F EN +QE
Sbjct: 8 ALRSRFEQVQHQINDACAQYK--QNTVQLLAVSKRHSIEAIRAIHALGQQSFGENYVQEG 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L ++ FIG LQSNK ++ F + T+ R+K A LS + L
Sbjct: 66 VDKINALSD-LAIEWHFIGPLQSNKTKDVAEHFAWMHTLERDKIAKRLSQQRPSHLPPLN 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK--PHFYLLSE 179
V IQ+N + KSGI L + GLMCIP F + +
Sbjct: 125 VLIQINISQQESKSGISLQDLPALAQQVNDYDNLCLRGLMCIPAPQDEASLTQDFCSMFQ 184
Query: 180 IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ K + LSMGM+ D ELAI G+T VR+GS IFG R
Sbjct: 185 AFEKLKQQYSTVDTLSMGMSGDLELAIEQGSTMVRVGSAIFGPRD 229
>gi|312795172|ref|YP_004028094.1| hypothetical protein RBRH_01661 [Burkholderia rhizoxinica HKI 454]
gi|312166947|emb|CBW73950.1| Hypothetical cytosolic protein [Burkholderia rhizoxinica HKI 454]
Length = 234
Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats.
Identities = 81/233 (34%), Positives = 108/233 (46%), Gaps = 11/233 (4%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
MS + L ++I A A R SV L+AVSK + IR A + GQ F EN +
Sbjct: 1 MSTLIAPHLDEVCRRIAAVAAAAGRDPASVQLLAVSKTFPADAIRAAHAAGQQAFGENYV 60
Query: 59 QEAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
QEA K L+ ++ FIG LQSNK + FD + +V R K A LS +
Sbjct: 61 QEALDKIAALQPLRASLEWHFIGPLQSNKTRPVAEQFDWVHSVDRLKIAHRLSEQRPTHL 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHF 174
L V +QVN E K G+ P+ +L + GLM IP + +
Sbjct: 121 PPLNVCVQVNVSGEASKHGVAPDDVATLARDVAALPRLRLRGLMSIPEPVSGLHAQRAPH 180
Query: 175 YLLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L E+ A+ L LSMGM+ D + AI GAT VR+G+ IFG R T
Sbjct: 181 RRLRELFDAVNAQGLGLDTLSMGMSADLDAAILEGATIVRVGTAIFGPRTYPT 233
>gi|163788570|ref|ZP_02183015.1| hypothetical protein FBALC1_10052 [Flavobacteriales bacterium
ALC-1]
gi|159875807|gb|EDP69866.1| hypothetical protein FBALC1_10052 [Flavobacteriales bacterium
ALC-1]
Length = 219
Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats.
Identities = 65/231 (28%), Positives = 103/231 (44%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L+ K + + V+LVAVSK + A + GQ IF ENK+QE
Sbjct: 1 MNIKTNLESIKSSL----------SEHVTLVAVSKTKPISDLMEAYNAGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ + K D++ IG +Q NKV + +I V K ++ + K +R +
Sbjct: 51 MVDKYGQMPK--DIEWHMIGHVQRNKVKYMAEFVSLIHGVDSFKLLKEINKQAKKHNRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPA---MGNPKPHFY 175
+Q+ E K G+ + + NV G+M + MG + F
Sbjct: 109 NCLLQIKIAEEDSKFGMSAEDASTLLQSDEFSELQHTNVVGVMGMATFTNNMGQIEKEFK 168
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L ++ KL +SMGM+ D++LAI G+T +R+GS IFG R
Sbjct: 169 FLKSTFQKLKTLNSKLATISMGMSGDYQLAIECGSTMIRVGSSIFGSRNYS 219
>gi|329955861|ref|ZP_08296664.1| pyridoxal phosphate enzyme, YggS family [Bacteroides clarus YIT
12056]
gi|328525241|gb|EGF52291.1| pyridoxal phosphate enzyme, YggS family [Bacteroides clarus YIT
12056]
Length = 221
Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats.
Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 26/230 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ ++ + V LVAVSK ++ I A + GQ +F E+K+QE
Sbjct: 2 IAENIKQVLSEL----------PEGVRLVAVSKFHPNEAIEEAYNAGQRVFGESKVQEMT 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L K D++ FIG LQ+NK+ IV +I V K + ++ + K R +
Sbjct: 52 AKYESLPK--DIEWHFIGHLQTNKIKYIVPYVALIHGVDSYKLLTEINKQAAKAGRMVNC 109
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
+Q++ E K G ++ ++ + ++ + + GLM + N + F L
Sbjct: 110 LLQLHIAQEETKFGFSFDECREMLTGDEWKELKNIRICGLMGMATNTDNVEQIKAEFCSL 169
Query: 178 SEIARECKLT---------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +E K T +LSMGM+ D+ AIA+G+T VR+GS IFGER
Sbjct: 170 NSFFQEVKATWFSNAEWFRELSMGMSHDYHEAIAAGSTLVRVGSKIFGER 219
>gi|154494905|ref|ZP_02033910.1| hypothetical protein PARMER_03949 [Parabacteroides merdae ATCC
43184]
gi|154085455|gb|EDN84500.1| hypothetical protein PARMER_03949 [Parabacteroides merdae ATCC
43184]
Length = 222
Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats.
Identities = 65/234 (27%), Positives = 110/234 (47%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + K + V+LVAVSK + ++ A + GQ +F E++ QE
Sbjct: 1 MNITENITRLKASL----------PAGVTLVAVSKFHPVEALQEAYNAGQRVFGESRAQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L D++ FIG LQSNKV +I I ++ K ++ + K R +
Sbjct: 51 LTAKQKVLPS--DIEWHFIGPLQSNKVKDIAPFIHTIHSIDSLKLLQEVNKQAAKHDRII 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
V ++++ E K G P++ ++ + +L + + GLM + + K F+
Sbjct: 109 RVLLEIHIAQEEAKHGFSPDECRELLYNLLPEALPYIRICGLMGMATNTDDTSLIKNEFH 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E+ E K +LSMGM+ D+ +AI G+T +RIG+ IFGER
Sbjct: 169 NIHELFTELKNSVFKGDEYFCELSMGMSHDYPIAIREGSTMIRIGTSIFGEREY 222
>gi|227112106|ref|ZP_03825762.1| putative alanine racemase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 270
Score = 263 bits (674), Expect = 1e-68, Method: Composition-based stats.
Identities = 69/213 (32%), Positives = 101/213 (47%), Gaps = 11/213 (5%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
R +V L+ VSK ++R+A + G I ENK+QEA +KW ++ D+Q
Sbjct: 41 CQRVGRDPATVRLLPVSKTKPENRLRMAHAAGCRILGENKVQEAFRKWEAMQDLTDLQWS 100
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
IG LQ+NK + + + + A L + + R L V++QVNT E K G+
Sbjct: 101 VIGHLQTNKAKLVARFATEFQALDSLRLAEALDRRLQIEGRSLDVFVQVNTSGEASKYGL 160
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK--------L 186
P F+ L V GLM + + + F L ++ + L
Sbjct: 161 SPEDVPAFIQALPAFSALRVRGLMTLALFSSDAERVRQCFIRLRQLRDRLQQNLPVGIAL 220
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+LSMGM+ DFE+AI GAT VR+G IFG RP
Sbjct: 221 DELSMGMSGDFEIAIEEGATVVRVGQAIFGARP 253
>gi|326388562|ref|ZP_08210155.1| hypothetical protein Y88_2962 [Novosphingobium nitrogenifigens DSM
19370]
gi|326206813|gb|EGD57637.1| hypothetical protein Y88_2962 [Novosphingobium nitrogenifigens DSM
19370]
Length = 234
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 85/213 (39%), Positives = 122/213 (57%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +I+++A +A R + V+LVA+SK + I ++ GQ +F EN++QEA+ KW
Sbjct: 21 LAAIRARIDHAAKIAGRKGEDVTLVAISKTKPASAILPLIAEGQRVFGENRVQEAQDKWP 80
Query: 67 PL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L D +L +G LQSNK V LFD I ++ R + L+ M K R +P+++Q
Sbjct: 81 ALIEAYPDCKLHLVGQLQSNKAEAAVRLFDCIHSLDRPSLLTALAHAMDKVGRRVPLFVQ 140
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VN G E QK G + R L V+GLMC+PPA P F LL ++A +
Sbjct: 141 VNIGEEEQKGGCAIADLPALLTQARAAD-LPVQGLMCVPPAGIEAAPFFALLGKLAADHG 199
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ LSMGM+ DFE A+ GAT VR+GS +FG R
Sbjct: 200 LSGLSMGMSEDFETAVMLGATHVRVGSALFGRR 232
>gi|325509536|gb|ADZ21172.1| enzyme with a TIM-barrel fold protein [Clostridium acetobutylicum
EA 2018]
Length = 221
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 76/230 (33%), Positives = 110/230 (47%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + LQ K+KI V+LVAVSK + I+ A G F ENK+QE
Sbjct: 1 MGITYNLQKVKEKI----------PKEVTLVAVSKTKPIEDIKEAYEQGIRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ + DV+ IG LQ NKV IV +I ++ K + +
Sbjct: 51 LMSKYDEMNS--DVRWHLIGHLQVNKVKYIVGKVFLIHSLDSIKLLKEIEKRYTNEGLKA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN--PKPHFYLLS 178
V I+VN G E K+GI+ + + C++ +NV+GLM + P + + +F +
Sbjct: 109 DVLIEVNIGREESKTGILEENLEALLDECQKCNSVNVKGLMAVIPVGDDNSNRHYFRKMK 168
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
I + K + LSMGMT D+E+AIA GA VR+G GIFG+R
Sbjct: 169 AIFDDLKHKNIKNVDMKYLSMGMTHDYEIAIAEGANIVRVGEGIFGKRDY 218
>gi|217969412|ref|YP_002354646.1| alanine racemase [Thauera sp. MZ1T]
gi|217506739|gb|ACK53750.1| alanine racemase domain protein [Thauera sp. MZ1T]
Length = 271
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 70/227 (30%), Positives = 101/227 (44%), Gaps = 11/227 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
NKL + +I+ + A R V L+ VSK +R+A + G + ENK+QEA +
Sbjct: 27 RNKLAAVRARIDAACRRAGRDPADVRLLPVSKTKPEASVRMAYAAGCRMLGENKVQEAHR 86
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
KW + ++ IG LQ+NK + D + + + A L + + R L V+
Sbjct: 87 KWEATQDLGGLRWSIIGHLQTNKARMVARFADEFQALDSLRVAEALERRLQVEGRSLDVF 146
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL------ 177
+QVNT E K G+ P FV L V GLM + +
Sbjct: 147 VQVNTSGEASKYGLAPEDVPGFVRALPAFSALRVRGLMTLALFSSEAERVRQCFILLRTL 206
Query: 178 -----SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +LSMGM+ DFE+AI GAT VR+G +FG RP
Sbjct: 207 RDRLRQSAPTGIGLDELSMGMSDDFEIAIEEGATVVRVGQALFGARP 253
>gi|33594951|ref|NP_882594.1| hypothetical protein BPP0235 [Bordetella parapertussis 12822]
gi|33565027|emb|CAE39976.1| conserved hypothetical protein [Bordetella parapertussis]
Length = 256
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 77/232 (33%), Positives = 119/232 (51%), Gaps = 12/232 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++L + +I+ + + RP +SV+L+ VSK + IR A + G F ENK QE
Sbjct: 25 SMPHRLAAIQARIKAACERSARPPESVALLPVSKTFPVEAIRHAAALGLRRFGENKTQEI 84
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L D+Q IG LQ+NK ++ ++++ R + A L + ++R L
Sbjct: 85 RHKAPELAD-LDLQWVMIGHLQTNKAKDVARDVAEVQSLDRLELADALQRRLEMEARSLD 143
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI-LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V +QV T E+ K G+ P F+ L L V+GLM + +P + F LL
Sbjct: 144 VLVQVKTSPELSKYGLAPELLPGFLRTLVSDFPALRVQGLMTMAVNDEDPQAVRACFRLL 203
Query: 178 SEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
E+ + L +LSMGM+ DFE+AI G+T +RIGS +FG RP
Sbjct: 204 RELRDRARDSVPGVALDRLSMGMSGDFEIAIEEGSTEIRIGSALFGARPASA 255
>gi|325133219|gb|EGC55889.1| hypothetical protein TIGR00044 [Neisseria meningitidis M6190]
Length = 228
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 104/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
L V I+VN E K G+ P + + + L V GLMC+ A + K F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|300773394|ref|ZP_07083263.1| YggS family pyridoxal phosphate enzyme [Sphingobacterium
spiritivorum ATCC 33861]
gi|300759565|gb|EFK56392.1| YggS family pyridoxal phosphate enzyme [Sphingobacterium
spiritivorum ATCC 33861]
Length = 229
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 70/232 (30%), Positives = 106/232 (45%), Gaps = 25/232 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ Q+I++ V+LVAVSK ++ I A GQ +F EN +QE
Sbjct: 1 MSIAANIEEINQEIKSL---------GVTLVAVSKTKPNEDILQAYEAGQRVFGENMVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L K D++ IG LQ+NKV I +IE+V K ++ +K R +
Sbjct: 52 LVEKQEQLPK--DIEWHLIGHLQTNKVKYIAPFIHMIESVDSIKLLKEINKHALKHDRII 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+QV E K G+ + + + + + GLM I N K FY
Sbjct: 110 DCLLQVYIADEDTKFGLDHTELIELLRDDEFSSLKNIRIRGLMGIATNTENEKVIKEEFY 169
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + K LSMGM+ D+ LAI G+T +R+GS +FG+R
Sbjct: 170 ELKMLFDGVKSSFFRKEDTFDTLSMGMSSDYRLAIEQGSTMIRLGSTVFGKR 221
>gi|294085223|ref|YP_003551983.1| hypothetical protein SAR116_1656 [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292664798|gb|ADE39899.1| Protein of unknown function UPF0001 [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 223
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 110/222 (49%), Positives = 138/222 (62%), Gaps = 3/222 (1%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKD-SVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M+ + + L+ + KI+ +A +LVAVSK +I AL GQ F EN++
Sbjct: 1 MTAIHDNLKAVQDKIQAAARADAHADADEPTLVAVSKRQPDDRIDAALDAGQRCFGENRV 60
Query: 59 QEAKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
QEA+ +W R D+ L IG+LQ+NK ++ V+LFDVIE V R K A LS EM KQ+
Sbjct: 61 QEAQTRWAARRAAYPDLILHLIGALQTNKAADAVALFDVIEVVDRPKLARALSGEMAKQN 120
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
R L YIQVNTG E QKSGI P DF+ CR +Y LN+ GLMCIPPA P HF LL
Sbjct: 121 RQLDCYIQVNTGDEPQKSGISPADVDDFIAQCRDEYGLNIIGLMCIPPADEEPAMHFALL 180
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ IA+ L KLSMGM+ D+E AI GATSVR+GS IFG R
Sbjct: 181 ATIAKRNGLDKLSMGMSGDYEEAIGFGATSVRVGSAIFGARD 222
>gi|253576142|ref|ZP_04853474.1| YggS family pyridoxal phosphate enzyme [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844485|gb|EES72501.1| YggS family pyridoxal phosphate enzyme [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 234
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 74/227 (32%), Positives = 111/227 (48%), Gaps = 13/227 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
SL ++Q +++I+ + + R ++ V +VAV+K V + R L G V EN+ Q A
Sbjct: 6 SLKERIQHVEEQIKAACERSGRKREEVHVVAVTKYVSVEATREVLEAGIVHIGENRPQIA 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW L + FIG LQSNKV +++ F I ++ R A L +
Sbjct: 66 VPKWEALGGQG--TWHFIGHLQSNKVKDVIGRFQYIHSLDRLSLARELEKRASAMGTSVT 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
++QVN E K GI P DF+ + V GLM + P + +P F L
Sbjct: 124 AFLQVNVSGEASKQGIAPEAAADFLKEIADLKHVRVVGLMTMAPIEEDAERTRPVFRKLR 183
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E+ + LT+LSMGM+ DFE+AI GAT VR+G+ + G+
Sbjct: 184 ELRDQLNAQSVTAEPLTELSMGMSGDFEVAIEEGATWVRLGTLLVGK 230
>gi|227536720|ref|ZP_03966769.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33300]
gi|227243412|gb|EEI93427.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33300]
Length = 229
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 70/232 (30%), Positives = 106/232 (45%), Gaps = 25/232 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ Q+I++ V+LVAVSK ++ I A GQ +F EN +QE
Sbjct: 1 MSIAANIEEINQEIKSL---------GVTLVAVSKTKPNEDILQAYEAGQRVFGENMVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L K D+Q IG LQ+NKV I +IE+V K ++ +K R +
Sbjct: 52 LVEKQEQLPK--DIQWHLIGHLQTNKVKYIAPFIHMIESVDSIKLLKEINKHALKHDRII 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+Q+ E K G+ + + + + + GLM I N K FY
Sbjct: 110 DCLLQIYIADEDSKFGLDHTELIELLRDEEFSSLQNIRIRGLMGIATNTDNEKVIKEEFY 169
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + K LSMGM+ D+ LAI G+T +R+GS +FG+R
Sbjct: 170 ELKMLFDGVKSSFFRKEDSFDTLSMGMSSDYRLAIEQGSTMIRLGSTVFGKR 221
>gi|309781317|ref|ZP_07676053.1| pyridoxal phosphate enzyme, YggS family [Ralstonia sp. 5_7_47FAA]
gi|308919730|gb|EFP65391.1| pyridoxal phosphate enzyme, YggS family [Ralstonia sp. 5_7_47FAA]
Length = 238
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 81/233 (34%), Positives = 114/233 (48%), Gaps = 15/233 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q+I + LA R V+L+AVSK D+ IR A + GQ +F EN +Q
Sbjct: 1 MSAIVANLQAVRQRITTACTLASRDAAGVTLLAVSKTFDADAIRAAHAAGQRLFGENYVQ 60
Query: 60 EAKKKWIPLRKE----WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E K L ++ FIG LQSNK + FD + +V R K A LS +
Sbjct: 61 EGIAKIDALADLRTGIDPIRWHFIGPLQSNKTRAVAEQFDWVHSVDRLKIAERLSAQRPD 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--- 170
L V +++N + K G++P ++ +L + GLM +P +P
Sbjct: 121 TLPPLQVCLEINISRQASKHGLLPDFDEVLAVAQAVSALPRLQLRGLMAVPEPSDDPAAQ 180
Query: 171 KPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ F L +A + L LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 181 RKPFADLCALANRLREAGIPLDTLSMGMSADLEDAIAEGATIVRVGSAIFGAR 233
>gi|328907236|gb|EGG27002.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium sp. P08]
Length = 238
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 72/234 (30%), Positives = 111/234 (47%), Gaps = 13/234 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ N + + +I+++ R VSL+ VSK + A G +F ENK+Q+
Sbjct: 1 MSVANNVAAVRTRIDDACQACDRDPGEVSLLPVSKTKPPSMVDEAYQAGYRLFGENKVQD 60
Query: 61 AKKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A K + ++ IG LQ+NK + + + K A L + ++
Sbjct: 61 ALAKSELMDADHPGLEWAIIGGLQTNKAKYVARFAAEFQALDSLKVAHELDKRLQQEGHQ 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYL 176
L V +QVN+ E QKSGI P++ +F L+V GLM + P F L
Sbjct: 121 LRVLVQVNSSAEPQKSGIAPDEAVEFARELAAFDSLDVRGLMTVALNSPDQQAVADCFDL 180
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER-PCQ 221
++ + + ++LSMGM+ D E+AIA G+T VRIG+ IFG R P Q
Sbjct: 181 VAATQEKLRQEAGDISSWSELSMGMSGDLEIAIAHGSTQVRIGTDIFGARDPAQ 234
>gi|317121717|ref|YP_004101720.1| alanine racemase domain protein [Thermaerobacter marianensis DSM
12885]
gi|315591697|gb|ADU50993.1| alanine racemase domain protein [Thermaerobacter marianensis DSM
12885]
Length = 230
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 81/231 (35%), Positives = 116/231 (50%), Gaps = 15/231 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++I +A A R ++LVAVSK V +R A + G F EN+ QE
Sbjct: 1 MTIAERVAAVRERIAAAAARAGRDPGEITLVAVSKTVPVAAMREAYAAGIRHFGENRAQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+ K+ DV F+G LQ+NKV I ++ ++ R A + + R L
Sbjct: 61 ARDKFPAFGD--DVHWHFVGRLQTNKVKYIARHCHLLHSLDRLALAQEVDRRASRCGRVL 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
P ++VN E K+G+ P + F+ L V GLM + P NP +P F L
Sbjct: 119 PCLVEVNVAGEATKAGLPPEKVIPFLHQVAGWPGLRVVGLMTVAPRADNPEEVRPVFRRL 178
Query: 178 SEIARE----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A E +L LSMGMT DFE+A+ GAT VRIG IFGER
Sbjct: 179 RELAEEAARQCRGLPGIELRHLSMGMTDDFEVAVEEGATLVRIGRAIFGER 229
>gi|302389570|ref|YP_003825391.1| alanine racemase domain protein [Thermosediminibacter oceani DSM
16646]
gi|302200198|gb|ADL07768.1| alanine racemase domain protein [Thermosediminibacter oceani DSM
16646]
Length = 229
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ K KI+++A + R + + +VAV+K + + I+ A+ G I EN++QEA+
Sbjct: 4 IQQNIEKLKLKIKHAAAKSGRSPEDIHIVAVTKTIPPETIQAAVDRGIKILGENRVQEAQ 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K ++ D+ IG LQ NKV V LF +I++V + A+ + + + V
Sbjct: 64 QKVGLVKG--DISWHMIGHLQKNKVKYAVKLFSMIQSVDSYELAAEIDKRAGMLGKVMDV 121
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQVN G E K G + + + + V GLM I P +P +P F + E
Sbjct: 122 LIQVNIGREKTKFGAEYEEIPELIKKVSTLAHVKVRGLMAIAPFKEDPEDVRPFFRKMRE 181
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K ++ LSMGMT DF +AI G+ +RIG+GIFG R
Sbjct: 182 LFTKIKSQELENVEMSFLSMGMTHDFHIAIEEGSNMIRIGTGIFGPR 228
>gi|323702134|ref|ZP_08113801.1| alanine racemase domain protein [Desulfotomaculum nigrificans DSM
574]
gi|323532821|gb|EGB22693.1| alanine racemase domain protein [Desulfotomaculum nigrificans DSM
574]
Length = 226
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 118/227 (51%), Gaps = 12/227 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + V K +I ++A+ A R + V ++AV+K V + K + A+ G EN++QE
Sbjct: 1 MSIVENITVIKNEIADAALRAGRQPNEVKIIAVTKNVAAAKAQEAVRAGLTDLGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K+ + + IG LQSNKV IV D+I ++ R A + + + L
Sbjct: 61 LQNKFSEV---TGARWHLIGHLQSNKVKYIVDKVDLIHSLDRWSLALEIDRRAREAGKVL 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+QVN E K G+ N+ KDFV + + GLM I P + +P +P F L
Sbjct: 118 SALVQVNVAKETTKFGLYVNEVKDFVTEAATLRGIYIRGLMTIAPLVQDPEEVRPVFRQL 177
Query: 178 SEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+IA + K+ LSMGMT D+ +A+ GAT VRIG+ IFG R
Sbjct: 178 RQIAEDLKEIPGIKMEHLSMGMTNDYRIAVEEGATMVRIGTAIFGRR 224
>gi|319649649|ref|ZP_08003805.1| hypothetical protein HMPREF1013_00409 [Bacillus sp. 2_A_57_CT2]
gi|317398811|gb|EFV79493.1| hypothetical protein HMPREF1013_00409 [Bacillus sp. 2_A_57_CT2]
Length = 228
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 73/229 (31%), Positives = 113/229 (49%), Gaps = 16/229 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ + I+ + I A R + ++L+AV+K V +++ + AL G V EN+ +
Sbjct: 1 MRVEDNLKQIESAIKEACIKANRKPEEITLIAVTKYVSAERAQEALEAGIVHLGENRDEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KW L+ + FIG+LQ+ KV I+ D I ++ R A + R +
Sbjct: 61 LLAKWDVLKDKP--TWHFIGTLQTRKVKNIIDKVDYIHSLDRLSLAKEIDKRA---DRKI 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K GI P + DF+ LNV GLM + P N + F L
Sbjct: 116 NCFVQVNVSGEESKQGINPEEVADFISCLADYKNLNVIGLMTMAPLSDNEELLRSCFRKL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K T+LSMGM+ DF LAI GAT VRIG+ + G++
Sbjct: 176 KNLQTKVKDLGFDFAPCTELSMGMSNDFSLAIEEGATMVRIGTALVGQK 224
>gi|255010408|ref|ZP_05282534.1| hypothetical protein Bfra3_14824 [Bacteroides fragilis 3_1_12]
gi|313148210|ref|ZP_07810403.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313136977|gb|EFR54337.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 222
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 68/232 (29%), Positives = 108/232 (46%), Gaps = 26/232 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L+ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MNVTDNLKQVLAEL----------PSGVRLVAVSKFHPNEAIEEAYRAGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D++ FIG LQ+NK+ + +I + K + ++ + IK R +
Sbjct: 51 MTGKYESLPK--DIEWHFIGHLQTNKIKYMAPYVSMIHGIDSYKLLAEVNKQAIKAGRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIPPAMG---NPKPHFY 175
+Q++ E K G ++ K+ + + + GLM + + F
Sbjct: 109 RCLLQIHIAQEETKFGFSFDECKEMLNADEWKALANIQICGLMGMATNTDSKEQIEREFR 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ E K +LSMGM+ D+ LAIA G+T VR+GS IFGER
Sbjct: 169 SLNCFFHEVKKQYFADEPTFCELSMGMSHDYHLAIAEGSTLVRVGSKIFGER 220
>gi|325288176|ref|YP_004263966.1| hypothetical protein Celly_3279 [Cellulophaga lytica DSM 7489]
gi|324323630|gb|ADY31095.1| protein of unknown function UPF0001 [Cellulophaga lytica DSM 7489]
Length = 222
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 69/233 (29%), Positives = 105/233 (45%), Gaps = 25/233 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L K + ++V+LVAVSK + A + GQ IF ENK+QE
Sbjct: 1 MSIKQSLLEIKNSL----------PETVTLVAVSKTKPVSDLEEAYAAGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW + K D+Q IG +Q+NKV + +I V K ++ + K +R +
Sbjct: 51 MTQKWEVMPK--DIQWHMIGHVQTNKVKYMAEYVSLIHGVDSLKLLKEINKQAKKYNRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNPK---PHFY 175
+Q++ E K G+ + V + + + V GLM + N F
Sbjct: 109 NCLLQMHIAEESTKFGLDLEELNSLVSSDVFKTLENIKVVGLMGMATFTDNQNQVKKEFG 168
Query: 176 LLSEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L E+ + LSMGM+ D+++AI G+T VRIGS IFG R
Sbjct: 169 TLKEVFSSLQSTKSTNLDVKILSMGMSGDYKIAIDQGSTMVRIGSSIFGSRNY 221
>gi|300703107|ref|YP_003744709.1| hypothetical protein RCFBP_10764 [Ralstonia solanacearum CFBP2957]
gi|299070770|emb|CBJ42067.1| conserved protein of unknown function, Predicted pyridoxal
phosphate-dependent enzyme [Ralstonia solanacearum
CFBP2957]
Length = 240
Score = 263 bits (673), Expect = 1e-68, Method: Composition-based stats.
Identities = 81/235 (34%), Positives = 113/235 (48%), Gaps = 15/235 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q+I + +LA R SV+L+AVSK D+ +R A + GQ +F EN +Q
Sbjct: 1 MSVIAANLQAVRQRITTACMLASRDPASVTLLAVSKTFDADAVRRAHAAGQRLFGENYVQ 60
Query: 60 EAKKKWIPLRK----EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E K L + FIG LQSNK + FD + +V R K A LS +
Sbjct: 61 EGIAKIDALADLRSGPGAIGWHFIGPLQSNKTRAVAEHFDWVHSVDRLKIAERLSAQRPA 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQ--TKDFVILCRQKYQLNVEGLMCIPPAMGN---- 169
L + +++N + K G+ P+ +L + GLM +P G+
Sbjct: 121 GLPPLQICLEINISRQASKHGVPPDADGVLALARAVAALPRLQLRGLMAVPEPAGDPAAR 180
Query: 170 --PKPHFYLLSEIARECKL--TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
P L++ RE L LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 181 RAPFAALRALADRLREAGLPIDTLSMGMSSDLEDAIAEGATIVRVGSAIFGARQY 235
>gi|295097490|emb|CBK86580.1| pyridoxal phosphate enzyme, YggS family [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 233
Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats.
Identities = 75/229 (32%), Positives = 110/229 (48%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + ++L+AVSK + I A++ G F EN +QE
Sbjct: 3 DIAHNLAQVRDKISAAATRCGRAPEEITLLAVSKTKPASAIAEAIAAGHRAFGENYVQEG 62
Query: 62 KKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K R+ D+Q FIG LQSNK + FD T+ R + A+ LS + +
Sbjct: 63 VDKIRAFRERGNTDLQWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLSDQRPAEMPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + +L + GLM IP + + F + +
Sbjct: 123 LNVLIQINISDENSKSGITLGELDALAADVAALPRLTLRGLMAIPAPESSYERQFAVAQQ 182
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 MAVAFEALKARYDTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231
>gi|325141275|gb|EGC63773.1| hypothetical protein TIGR00044 [Neisseria meningitidis CU385]
Length = 228
Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSEQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|161869070|ref|YP_001598236.1| hypothetical protein NMCC_0053 [Neisseria meningitidis 053442]
gi|161594623|gb|ABX72283.1| conserved hypothetical protein [Neisseria meningitidis 053442]
Length = 228
Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 102/227 (44%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSEQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLSDLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|171058313|ref|YP_001790662.1| alanine racemase domain-containing protein [Leptothrix cholodnii
SP-6]
gi|170775758|gb|ACB33897.1| alanine racemase domain protein [Leptothrix cholodnii SP-6]
Length = 229
Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats.
Identities = 77/226 (34%), Positives = 111/226 (49%), Gaps = 9/226 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +LQ ++ N+ A+RP +SV+L+AVSK + IR A + GQ F EN +QEA
Sbjct: 3 TIATRLQQVHGRLTNACRAAQRPDNSVALLAVSKTQPADAIRCAHAAGQRAFGENYVQEA 62
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L ++ IG LQ NK + FD + ++ R + A LS + + L
Sbjct: 63 LAKIAQLADLRQQIEWHLIGPLQGNKTRVVAEAFDWVHSIDRLRIAQRLSEQRPAGAAPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---YLL 177
V +QVN E KSG+ P D +L + GLM IP G+ + L
Sbjct: 123 QVCLQVNISGEASKSGLAPADVADVAHAVAALPRLRLRGLMAIPEPDGDLESQRRPHRAL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + L LSMGM+ D E A+ GAT VRIG+ +FG R
Sbjct: 183 RELFESLQARGLALDTLSMGMSADLEAAVLEGATMVRIGTAVFGAR 228
>gi|229541188|ref|ZP_04430248.1| alanine racemase domain protein [Bacillus coagulans 36D1]
gi|229325608|gb|EEN91283.1| alanine racemase domain protein [Bacillus coagulans 36D1]
Length = 225
Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats.
Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 13/227 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L +KIE + A R + V ++AV+K V +++ + AL G EN+
Sbjct: 1 MKVSENLARINEKIEKACQRAGRSRGDVEIIAVTKYVTTERAKEALEAGIQHLGENRDDG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK+ L FIG+LQ+ KV I+ I ++ R A + K + +
Sbjct: 61 LLKKYEALGNRP--VWHFIGTLQTRKVKNIIDKVSYIHSLDRLSLAEEIEKRAAKLDKEI 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+IQVN E K G+ P Q DFV + + V GLM + P + + F L
Sbjct: 119 NCFIQVNVSGEESKHGMAPGQVVDFVRKLKDFPHIRVAGLMTMAPLTEDEDVIRRTFRGL 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
++ ++ + +LSMGM+ DFE+A+ GAT VRIG+ + G
Sbjct: 179 KQLQQDIESLHLDYAPCRELSMGMSNDFEIAVEEGATFVRIGTALVG 225
>gi|159463278|ref|XP_001689869.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283857|gb|EDP09607.1| predicted protein [Chlamydomonas reinhardtii]
Length = 251
Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats.
Identities = 82/238 (34%), Positives = 115/238 (48%), Gaps = 22/238 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ--- 59
+ LQ +++ + A R V LVAVSK ++ ++ A GQ +F EN +Q
Sbjct: 6 IAAALQDVLSRMKQATERANR-THPVRLVAVSKTKPAEALQEAYDAGQRVFGENYVQARC 64
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIK- 115
E K L DVQ FIG LQSNKV + V ++ETV K A L+ +
Sbjct: 65 EMLDKAPALPG--DVQWHFIGHLQSNKVKAVLEGVPNLAMVETVDSAKLADKLNKTLETV 122
Query: 116 --QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNPKP 172
++ L V +QVNT E K G+ P + Q +L + GLM I + +P
Sbjct: 123 SGRTAPLAVMVQVNTSGEESKYGVEPTECVSLAKHIAQNCPKLRLAGLMTIGMPDYSSRP 182
Query: 173 H-FYLLS----EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F LS +A E L +LSMGM+ DFE AI G+T++R+GS IFG R +
Sbjct: 183 ECFICLSGCRDAVATELGLRPEQLELSMGMSGDFEQAIEMGSTNIRVGSTIFGAREYK 240
>gi|225021731|ref|ZP_03710923.1| hypothetical protein CORMATOL_01759 [Corynebacterium matruchotii
ATCC 33806]
gi|224945427|gb|EEG26636.1| hypothetical protein CORMATOL_01759 [Corynebacterium matruchotii
ATCC 33806]
Length = 262
Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats.
Identities = 80/228 (35%), Positives = 106/228 (46%), Gaps = 12/228 (5%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
Q ++I N+A A R + L+AVSK +A G + EN+ QE +
Sbjct: 30 RANYQAVTERIANAAHAAGRDPADIRLIAVSKTFPISHALLAAEAGMTVLGENRPQELAE 89
Query: 64 KWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K R DV IG LQ NK EI + + A L + +R L V
Sbjct: 90 KAQAFRIRGVDVTWCAIGHLQRNKAKEIAQFAAEFHALDSLRLAEALQHRLELANRTLDV 149
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSE 179
+IQVNT +E QKSG P++ + +L V GLM + P +P F L
Sbjct: 150 FIQVNTSHESQKSGFAPDEVAAILPSLATLDRLRVRGLMTMAAFSPEESVVRPSFEQLRT 209
Query: 180 IARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + +L +LSMGMT DFE AIA GATSVRIG+ IFG RP
Sbjct: 210 LRDQLQLDAPDGMSLTELSMGMTGDFEWAIAEGATSVRIGTAIFGHRP 257
>gi|85714105|ref|ZP_01045094.1| hypothetical protein NB311A_08113 [Nitrobacter sp. Nb-311A]
gi|85699231|gb|EAQ37099.1| hypothetical protein NB311A_08113 [Nitrobacter sp. Nb-311A]
Length = 224
Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats.
Identities = 97/224 (43%), Positives = 135/224 (60%), Gaps = 6/224 (2%)
Query: 1 MSLGNK-----LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAE 55
M+ L + I + A+R + SV+LVAVSK D++ I ++ GQ +F E
Sbjct: 1 MTTAEAAPIKGLASVEAAIVRACRDARRDRSSVTLVAVSKTFDAEAITPVIAAGQRVFGE 60
Query: 56 NKLQEAKKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
N++QEA++KW L + L IG LQSNK + V+LFD I +V R L+ E+
Sbjct: 61 NRVQEAQRKWPELIAAHPGIVLHLIGPLQSNKAKDAVALFDAIHSVDRVSLCEALAKEID 120
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
+Q+R +++Q+NTG E QK+G++P DF+ CR Y L + GLMCIPP P PHF
Sbjct: 121 RQNRRPALFVQINTGEEPQKAGVVPADADDFIARCRDTYGLTISGLMCIPPVDEAPAPHF 180
Query: 175 YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L ++IAR L +LSMGM+ DF +AIA GAT VR+GS IFG R
Sbjct: 181 ALTAKIARRNGLEQLSMGMSADFAVAIALGATHVRVGSAIFGTR 224
>gi|302036140|ref|YP_003796462.1| hypothetical protein NIDE0769 [Candidatus Nitrospira defluvii]
gi|300604204|emb|CBK40536.1| conserved protein of unknown function, UPF0001 [Candidatus
Nitrospira defluvii]
Length = 235
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 111/228 (48%), Gaps = 12/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +++ +++ +A A R +SV L+A SK V +++R A+ G EN+LQEA
Sbjct: 7 TIAGRVRAVLDEMQRAAARAGRLPESVRLIAASKTVSVERLRQAVDAGVRHLGENRLQEA 66
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L +E V FIG+LQ KV +V F+ I +V A + +
Sbjct: 67 LPKIDTLERE-GVVWHFIGTLQRRKVKSVVGRFETIHSVDSLALAEEIDRQAKTAGLRQR 125
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLS 178
+ ++VN E K G P + L++ GLM IPP + +P+F L
Sbjct: 126 ILLEVNLAGEASKGGFEPTTLVAALESLNGFEHLDIRGLMAIPPPTPTAEDARPYFRQLR 185
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A R + +LSMGM+ D+ +AI GAT VR+G+ IFG R
Sbjct: 186 TLAQALTARGYRNINMQELSMGMSHDYPVAIEEGATYVRVGTAIFGAR 233
>gi|189500708|ref|YP_001960178.1| alanine racemase domain-containing protein [Chlorobium
phaeobacteroides BS1]
gi|189496149|gb|ACE04697.1| alanine racemase domain protein [Chlorobium phaeobacteroides BS1]
Length = 229
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 72/227 (31%), Positives = 110/227 (48%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L+ +I + R ++L+AVSK S +R A GQ E+ +QE
Sbjct: 3 DIAINLKRISDEIRATCNRIGRDPGDITLIAVSKTKSSALVREAFDAGQRDLGESYVQEF 62
Query: 62 KKKWI-PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ ++ FIG LQSNKV +IV +I ++ + KTA LS +++
Sbjct: 63 LEKYSSDHLSGLPIRWHFIGHLQSNKVKDIVDKTYLIHSIDKLKTAEELSKLASRKNLTA 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE 179
I+VNT E K G+ P + ++GLM I P + F LL E
Sbjct: 123 DYLIEVNTSGEATKFGLSPETLLLETSRLFTLPNIRLKGLMTIASPDRNKARKEFRLLGE 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + LT+LSMGM++DF++AI GAT +RIG+ IFG R
Sbjct: 183 LLEKLRETSPDPSSLTELSMGMSQDFDIAIEEGATIIRIGTAIFGSR 229
>gi|17547402|ref|NP_520804.1| hypothetical protein RSc2683 [Ralstonia solanacearum GMI1000]
gi|17429705|emb|CAD16390.1| putative ipr001608 alanine racemase, n-terminal protein [Ralstonia
solanacearum GMI1000]
Length = 240
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 78/235 (33%), Positives = 113/235 (48%), Gaps = 15/235 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q+I + LA R SV+L+AVSK D+ +R A + GQ +F EN +Q
Sbjct: 1 MSVIAANLQAVRQRITTACTLASRDPASVTLLAVSKTFDADAVRAAHAAGQRLFGENYVQ 60
Query: 60 EAKKKWIPLRKEWD----VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E K L + + FIG LQSNK + FD + ++ R K A LS +
Sbjct: 61 EGTAKTSALTDLRNGPEAIAWHFIGPLQSNKTRAVAEHFDWVHSIDRLKIAERLSAQRPA 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMCIPPAMGN---P 170
L V +++N + K G+ P ++ +L + GLM +P +
Sbjct: 121 TLPPLQVCLEINISRQASKHGVPPDLDEVLPLARAVAALPRLRLRGLMAVPEPADDPAAR 180
Query: 171 KPHFYLLSEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ F L ++A + LSMGM+ D E AIA GAT VR+GS IFG R
Sbjct: 181 RAPFAALRDLADRLCAAGLPVDTLSMGMSADLEDAIAEGATIVRVGSAIFGARQY 235
>gi|156343716|ref|XP_001621090.1| hypothetical protein NEMVEDRAFT_v1g146073 [Nematostella vectensis]
gi|156206711|gb|EDO28990.1| predicted protein [Nematostella vectensis]
Length = 225
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 69/229 (30%), Positives = 102/229 (44%), Gaps = 22/229 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++ I + V+LVAVSK K I A + GQ IF ENK+QE
Sbjct: 7 TIKENIEEITASI----------PNDVTLVAVSKTKPIKDILEAYNAGQRIFGENKIQEM 56
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ L K D+Q IG LQ NKV + D+I V KT ++ + K +R +
Sbjct: 57 AAKYEELPK--DIQWHMIGHLQRNKVKYMAHFVDLIHGVDSLKTLQEINKQASKHNRVIK 114
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+Q E K G+ ++ + ++ + V GLM + N K F
Sbjct: 115 CLLQAKIAAEDSKFGLSFTHIEEVLASSEIKEFKNIQVVGLMGMATFTDNQQQLKKEFSS 174
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L L LSMGM+ D++LAI +G+ +R+GS IFG R
Sbjct: 175 LKTFFDTLATQYTTLKILSMGMSGDYQLAIKNGSNMIRVGSSIFGARNY 223
>gi|50084121|ref|YP_045631.1| hypothetical protein ACIAD0913 [Acinetobacter sp. ADP1]
gi|49530097|emb|CAG67809.1| conserved hypothetical protein; putative enzyme [Acinetobacter sp.
ADP1]
Length = 234
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 70/223 (31%), Positives = 104/223 (46%), Gaps = 7/223 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ +I+ + A+R +V L+AVSK +R GQ F EN LQEA
Sbjct: 10 KDARNQVLHQIQVACEQAQRDPATVQLLAVSKTHPDSALREMYQLGQRAFGENYLQEALD 69
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K L + D++ FIG +Q NK + FD + V R A LS + ++ L +
Sbjct: 70 KIEAL-DDLDIEWHFIGHVQRNKTKLLAEKFDWVHGVDRLIIAERLSSQRLQTQPPLNLC 128
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM-----GNPKPHFYLLS 178
IQVN ++ K G P V Q Q+ + G+M IP + K F +
Sbjct: 129 IQVNIDHQDSKDGCQPEDVAQLVEEISQLPQVRLRGIMVIPAPDQITAFTDAKQLFEQVK 188
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + LSMGM+ D + AIA+GA+ VRIG+ +FG R
Sbjct: 189 SHHQQPQDWDTLSMGMSGDLQQAIAAGASIVRIGTALFGARDY 231
>gi|325474954|gb|EGC78140.1| hypothetical protein HMPREF9353_00987 [Treponema denticola F0402]
Length = 246
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 12/230 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L+ +++E + R V L+ +K V ++I A G+++ ENK+QE
Sbjct: 4 DIKINLEEVHRRMEKACKTCGRDLKEVRLLMATKTVTPERILKAFEYGELLIGENKVQEL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ PL + FIG LQ+NK+ +++ D IE+V R A LS + + + +
Sbjct: 64 CEKYEPLSSVKH-ETHFIGHLQTNKIKDVIKYADCIESVDRLDLAEKLSKRLESEGKTMD 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
+ IQVNT E K G P + + L ++GLM I N + F LL
Sbjct: 123 ILIQVNTSQEESKFGCKPEEALSLTEKIAKLPCLKIKGLMTIGLFSDNMDKVRLCFKLLQ 182
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+I +E + +SMGMT D E+AI G+T +R+G+ IFG+R
Sbjct: 183 KIRKEITEKNIPNVSMEVVSMGMTGDLEVAIEEGSTLIRVGTAIFGKRNY 232
>gi|320155279|ref|YP_004187658.1| hypothetical protein VVM_00844 [Vibrio vulnificus MO6-24/O]
gi|319930591|gb|ADV85455.1| hypothetical protein YggS proline synthase co-transcribed bacterial
PROSC-like protein [Vibrio vulnificus MO6-24/O]
Length = 208
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 69/205 (33%), Positives = 97/205 (47%), Gaps = 11/205 (5%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK---WIPLRKEWDVQLRFIGSLQSN 85
L+AVSK + I A GQ F EN +QE +K + E ++ FIG +QSN
Sbjct: 2 QLLAVSKTKPVEAILEAYHAGQRAFGENYVQEGVEKVRFFAEQHPEKSIEWHFIGPIQSN 61
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
K + F + T+ R+K A L+ + + L V IQVNT E KSG+ +
Sbjct: 62 KSRLVAEHFAWVHTIDRDKIAQRLNDQRPAELPPLQVLIQVNTSGEASKSGVSGEEIFAL 121
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEIAREC-----KLTKLSMGMTRDF 197
L L + GLM IP + + F L+E+ + + LSMGM+ D
Sbjct: 122 AELISTLPNLTLRGLMSIPENVDDHASQLAAFQPLAELQQRLVQRYPSVDTLSMGMSGDM 181
Query: 198 ELAIASGATSVRIGSGIFGERPCQT 222
+ AI SG+T VRIG+ IFG R
Sbjct: 182 DAAIESGSTMVRIGTAIFGHRDYSN 206
>gi|145300499|ref|YP_001143340.1| hypothetical protein ASA_3631 [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142853271|gb|ABO91592.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 233
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 78/233 (33%), Positives = 111/233 (47%), Gaps = 12/233 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + L K++I +A A R D ++L+AVSK + IR A + GQ E+ Q
Sbjct: 1 MSQIAQHLLQVKERIVQAARQADRCVDHINLLAVSKTKPLEAIREAYAAGQRRLGESYAQ 60
Query: 60 EAKKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
EA K LRK D++ FIG LQSNK + FD +++V R+K L+ +
Sbjct: 61 EAATKIDTLRKQAVCTDIEWHFIGPLQSNKSRLVAERFDWVQSVDRDKLIERLNNQRPAG 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPH 173
L + +Q+N E KSG + L + +L + GLM IP +
Sbjct: 121 LAPLNICLQINISGESSKSGTSEQEIFRLAELVSRSERLVLRGLMAIPEHTSDEAVLAAQ 180
Query: 174 FYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ + E + LSMGMT D ELAIA G+T VR+G+ IFG R
Sbjct: 181 MVRMQTLFTELAQQYPSVDTLSMGMTEDLELAIAHGSTMVRVGTAIFGARDYS 233
>gi|254976212|ref|ZP_05272684.1| putative alanine racemase [Clostridium difficile QCD-66c26]
gi|255093599|ref|ZP_05323077.1| putative alanine racemase [Clostridium difficile CIP 107932]
gi|255101787|ref|ZP_05330764.1| putative alanine racemase [Clostridium difficile QCD-63q42]
gi|255307655|ref|ZP_05351826.1| putative alanine racemase [Clostridium difficile ATCC 43255]
gi|255315347|ref|ZP_05356930.1| putative alanine racemase [Clostridium difficile QCD-76w55]
gi|255518012|ref|ZP_05385688.1| putative alanine racemase [Clostridium difficile QCD-97b34]
gi|255651128|ref|ZP_05398030.1| putative alanine racemase [Clostridium difficile QCD-37x79]
gi|260684194|ref|YP_003215479.1| putative alanine racemase [Clostridium difficile CD196]
gi|260687853|ref|YP_003218987.1| putative alanine racemase [Clostridium difficile R20291]
gi|260210357|emb|CBA64716.1| putative alanine racemase [Clostridium difficile CD196]
gi|260213870|emb|CBE05885.1| putative alanine racemase [Clostridium difficile R20291]
Length = 234
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 69/231 (29%), Positives = 116/231 (50%), Gaps = 14/231 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L + KI+ +A R ++L+AV+K VD + A+ G ENK QE
Sbjct: 3 SIKDNLSEIRNKIDKAAKKVDRDSKEITLLAVTKTVDVDLVNEAMREGITSVGENKPQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ + + + IG+LQ+NKV I+ +I ++ R + + +R +
Sbjct: 63 ARKYDIIGDK--LNWHLIGTLQTNKVKYIIDKVCMIHSLDRIALCEEIQKRAEQINREID 120
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGNPKP---HFYLL 177
+QVN E K G+ + DFV +KY + ++GLM + P + + F L
Sbjct: 121 CLVQVNISKEESKHGLDREEVVDFVKEVSEKYKNIKIKGLMTMAPFIEDEDEIRGVFKGL 180
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+++++ K + LSMGM+ D+E+AI GAT VR+G+ IFGER
Sbjct: 181 KDLSKQIKELNIPNVGMDVLSMGMSHDYEIAIEEGATIVRVGTSIFGERNY 231
>gi|218767245|ref|YP_002341757.1| hypothetical protein NMA0217 [Neisseria meningitidis Z2491]
gi|121051253|emb|CAM07528.1| hypothetical protein NMA0217 [Neisseria meningitidis Z2491]
Length = 228
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 75/227 (33%), Positives = 102/227 (44%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + T+ R KTA LS +
Sbjct: 61 EWYDKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTICRLKTAVRLSRQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|325298083|ref|YP_004258000.1| hypothetical protein Bacsa_0936 [Bacteroides salanitronis DSM
18170]
gi|324317636|gb|ADY35527.1| protein of unknown function UPF0001 [Bacteroides salanitronis DSM
18170]
Length = 224
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 67/234 (28%), Positives = 113/234 (48%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ ++ + V LVAVSK ++ I A GQ IF E+K QE
Sbjct: 1 MDIQTNLRNVLAEL----------PEGVRLVAVSKFHPAEAIEEAYRAGQRIFGESKEQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L K D++ FIG LQ+NKV I +IE V K + ++ + K +R +
Sbjct: 51 LSEKYNVLPK--DIEWHFIGHLQTNKVKYIAPYITLIEAVDSYKLLTEINKQAGKHNRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
P ++++ E K G P+ ++ + ++ + + + G+M + + + F
Sbjct: 109 PCLLEIHVAQEESKYGFTPDDCREMLEAGEWKELHNIRIAGVMGMATNTDDEAQIEREFR 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + E K ++SMGM+ D+ +AI +G+T VR+GS IFGER
Sbjct: 169 TLKALFDEWKQAFFADEPAFKEISMGMSHDYRIAIRAGSTLVRVGSKIFGERNY 222
>gi|225444313|ref|XP_002263767.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 245
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 82/231 (35%), Positives = 110/231 (47%), Gaps = 16/231 (6%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L+ +++ +A + R + +VAVSK IR G F EN +QE +
Sbjct: 11 AAALRSVLHRVQQAAERSGRGPHQIRVVAVSKTKSVSLIREVYDSGHRCFGENYVQEIIE 70
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-F 119
K L + D++ FIG+LQSNKV + V V+ETV EK A L + R
Sbjct: 71 KAPQLPE--DIEWHFIGNLQSNKVKPLLTGVPNLAVVETVDDEKIADRLDRMVATIGRKP 128
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPH-FYLL 177
L V +QVNT E KSG+ P + V L GLM I P F L
Sbjct: 129 LKVMVQVNTSGEESKSGVDPAACVELVKHVALGCPNLEFGGLMTIGMLDYTSTPENFKTL 188
Query: 178 S----EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E+ + +T +LSMGM+ DFELAI G+T+VRIGS IFG R
Sbjct: 189 ANCRSEVCKSLGITEEQCELSMGMSGDFELAIEMGSTNVRIGSTIFGAREY 239
>gi|15644477|ref|NP_229529.1| hypothetical protein TM1731 [Thermotoga maritima MSB8]
gi|4982308|gb|AAD36796.1|AE001812_6 conserved hypothetical protein [Thermotoga maritima MSB8]
Length = 229
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 73/226 (32%), Positives = 116/226 (51%), Gaps = 12/226 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L L+ +++N+A+ A R V LV SK +++ + G F EN+ Q+
Sbjct: 1 MGLKENLERVLNRMKNAALRANRDPSEVRLVVASKYASVQQMEELVFLGIREFGENRAQD 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK + + + FIG +Q+NKV IV ++I +V RE+ + K +
Sbjct: 61 LVKKSEYFKGKP-IIWHFIGRIQTNKVKYIVPRCELIHSVWREEELKEIEKRAEKLGKIQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
+ ++VN E K+G++ + + F+ LC++ + V G M + P +G+P+ F L
Sbjct: 120 KILLEVNVFKEETKAGLLVEEVEGFLKLCQEFPHVEVLGFMTMAPYVGDPEEVRWGFRTL 179
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ E KL +LSMGM+ DFE+AI GAT VRIGS IF
Sbjct: 180 RELRDELASRFNGNVKLKELSMGMSNDFEVAIEEGATMVRIGSAIF 225
>gi|270157363|ref|ZP_06186020.1| conserved hypothetical protein [Legionella longbeachae D-4968]
gi|289164243|ref|YP_003454381.1| enzyme [Legionella longbeachae NSW150]
gi|269989388|gb|EEZ95642.1| conserved hypothetical protein [Legionella longbeachae D-4968]
gi|288857416|emb|CBJ11244.1| putative enzyme [Legionella longbeachae NSW150]
Length = 233
Score = 262 bits (671), Expect = 3e-68, Method: Composition-based stats.
Identities = 86/227 (37%), Positives = 115/227 (50%), Gaps = 10/227 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL L +Q I +A+ R + V L+AVSK KI+ A G F E+ QE
Sbjct: 1 MSLHQDLNRIQQLITQTALAYDRKPEGVLLLAVSKQQGVDKIQEAFRLGVKDFGESYFQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+KK L K + FIG +QSNK I +LF I ++SR K AS L+ K L
Sbjct: 61 AQKKITAL-KNLPINWHFIGPIQSNKTKGIATLFSWIHSISRLKIASQLNEYRTKDLSPL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
V IQVN E KSGI P + + + L + GLM IPP + +P F L
Sbjct: 120 NVCIQVNLIDEKSKSGIPPEHAAELALAINKLPNLKLRGLMTIPPPINDPDLQYDVFIRL 179
Query: 178 SEIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+++ ++ + LSMGM+ D AI +GAT VR+G IFGER
Sbjct: 180 NQLMQQLNQTLDLNMDTLSMGMSDDLIPAIKAGATIVRVGRAIFGER 226
>gi|254460609|ref|ZP_05074025.1| conserved hypothetical protein TIGR00044 [Rhodobacterales bacterium
HTCC2083]
gi|206677198|gb|EDZ41685.1| conserved hypothetical protein TIGR00044 [Rhodobacteraceae
bacterium HTCC2083]
Length = 218
Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats.
Identities = 92/222 (41%), Positives = 130/222 (58%), Gaps = 6/222 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL + + + A R S L+AVSK+ ++++ L G +F EN++QE
Sbjct: 1 MSLKE----IQDRFAKAENDAGRSAGSAQLIAVSKVQPNERVHAVLKQGHRVFGENRVQE 56
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW ++E+ D+ + IG LQ+NK + + LFD I TV R K A ++ + R
Sbjct: 57 AAGKWPAFKEEFSDISVHLIGPLQTNKARQAMELFDAIHTVDRAKLAKTIARLAQELGRC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+++QVNTG E QK+G+ P + F+ CR L V+GLMCIPPA P HF LL++
Sbjct: 117 PELFVQVNTGEEEQKAGVSPQEADGFIEECRSLD-LPVQGLMCIPPADEEPSLHFALLAK 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
IA L+ LSMGM+ DFE AIA GAT VR+GS IFG+R +
Sbjct: 176 IAARNGLSALSMGMSGDFERAIALGATHVRVGSAIFGDRAYE 217
>gi|313675306|ref|YP_004053302.1| alanine racemase domain protein [Marivirga tractuosa DSM 4126]
gi|312942004|gb|ADR21194.1| alanine racemase domain protein [Marivirga tractuosa DSM 4126]
Length = 220
Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats.
Identities = 68/232 (29%), Positives = 106/232 (45%), Gaps = 27/232 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L K+ LVAVSK ++ + A GQ ENK+QE
Sbjct: 1 MSIAGNLSAVKE-----------SLGKCHLVAVSKTKPNEDLMAAYDAGQRALGENKVQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L K D++ IG LQ NKV I +I +V + ++ + K R +
Sbjct: 50 MTDKAEVLPK--DIEWHMIGHLQRNKVKYIAPFVHLIHSVDSVRLLKEINKQGKKIDRVI 107
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
PV +Q++ E K G+ ++ + + ++ + V+GLM + + + F
Sbjct: 108 PVLLQIHIAEEENKYGLDEDELHELLSSEAFKEMNHVAVQGLMGMATFTDDTEKIRREFK 167
Query: 176 LLSEIAR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L ++ + L +LSMGM+ D+E+AI G+T VRIGS IFGER
Sbjct: 168 SLKKLFDKTAEQYNDEKLNLKELSMGMSGDYEIAIEEGSTMVRIGSKIFGER 219
>gi|298208470|ref|YP_003716649.1| hypothetical protein CA2559_09518 [Croceibacter atlanticus
HTCC2559]
gi|83848393|gb|EAP86262.1| hypothetical protein CA2559_09518 [Croceibacter atlanticus
HTCC2559]
Length = 219
Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats.
Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ +++ +K ++ + V LVAVSK + + A + GQ +F ENK+QE
Sbjct: 1 MNISEQIKYYKSQL----------PEDVVLVAVSKTKPEEDLLEAYNAGQRVFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW L K D++ IG +QSNKV + +++ + R K L+ + K R +
Sbjct: 51 MTEKWENLPK--DIEWHMIGHVQSNKVKYMAEYVNLVHGIDRLKLIKELNKQAQKHDRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNPKP---HFY 175
+Q+ E K G+ N + + + +NV G M + + + F
Sbjct: 109 NCLLQIKIAEEDTKFGMDINDAEAILNKDFKKTYPNVNVVGFMGMATFTNDEEQVQREFK 168
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L L LSMGM+ D++LAI G+T VRIGS IFGER
Sbjct: 169 TLKSHFDRLSKDHNSLKILSMGMSGDYKLAITEGSTMVRIGSAIFGERNY 218
>gi|163734310|ref|ZP_02141750.1| hypothetical protein RLO149_08699 [Roseobacter litoralis Och 149]
gi|161392318|gb|EDQ16647.1| hypothetical protein RLO149_08699 [Roseobacter litoralis Och 149]
Length = 218
Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats.
Identities = 91/219 (41%), Positives = 121/219 (55%), Gaps = 6/219 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL + Q+IE + A R SV L+AVSK+ +++ L G F EN++QE
Sbjct: 2 MSLSD----ISQRIEKAVADAGRAAGSVKLIAVSKVQPDERVEAVLKEGHRCFGENRVQE 57
Query: 61 AKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW R ++D V L IG LQ+NK + LF I T+ R K A +
Sbjct: 58 AAGKWPAFRDDYDGVDLHLIGPLQTNKARQAFDLFQSIHTLDRPKLAKAFARLAQDTGHC 117
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+++QVNTG E QK+G+ P+ FV CR L ++GLMCIPP HF LL++
Sbjct: 118 PEMFVQVNTGEEPQKAGVFPSDADGFVAECRALD-LPIKGLMCIPPIDEEASLHFALLAK 176
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IA L LSMGM+ DFE AI+ GAT +R+GS IFG R
Sbjct: 177 IAERNGLAGLSMGMSDDFEKAISFGATHIRVGSAIFGAR 215
>gi|254671716|emb|CBA09509.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
gi|325197354|gb|ADY92810.1| conserved hypothetical protein TIGR00044 [Neisseria meningitidis
G2136]
Length = 228
Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|221632825|ref|YP_002522047.1| hypothetical protein trd_0819 [Thermomicrobium roseum DSM 5159]
gi|221155434|gb|ACM04561.1| conserved hypothetical protein TIGR00044 [Thermomicrobium roseum
DSM 5159]
Length = 230
Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats.
Identities = 83/224 (37%), Positives = 120/224 (53%), Gaps = 9/224 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +IE +A A R SV +VAV+K +D +K++ A G +F EN++QEA+
Sbjct: 7 LREHLARVRCRIERAAERAGRDPQSVQIVAVTKGIDREKVQAAYELGLRLFGENRVQEAQ 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ D +L IG LQ+NKV V LF +I +V R L + R LP+
Sbjct: 67 RKFGENPLPPDAELHLIGYLQTNKVRHAVKLFALIHSVDRAALIEELHERAARVGRRLPI 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQVN E QK G P + + + L K L+V GLM I P + +P F L E
Sbjct: 127 LIQVNIAGEEQKHGCRPAEAAELLALGLTKPHLDVRGLMTIAPLVAESELVRPVFRALRE 186
Query: 180 IARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ + + L +LSMGM+ DF++A+ GAT VRIG +FG+
Sbjct: 187 LRDQLQERFQHPLPELSMGMSNDFDIAVEEGATLVRIGRALFGD 230
>gi|304320521|ref|YP_003854164.1| hypothetical protein PB2503_04737 [Parvularcula bermudensis
HTCC2503]
gi|303299423|gb|ADM09022.1| hypothetical protein PB2503_04737 [Parvularcula bermudensis
HTCC2503]
Length = 226
Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats.
Identities = 90/218 (41%), Positives = 125/218 (57%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + + +I +A A R D+V L VSK ++KI L+ G F EN++QEA
Sbjct: 5 DVIANYEQVQSRIRRAAQEAARSPDAVELTVVSKTWPTEKISPLLAHGHRRFGENRVQEA 64
Query: 62 KKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ KW L+ D + IG+LQSNK ++ + LFDV+E++ REK +R
Sbjct: 65 QAKWPALKSAYPDCCVHLIGALQSNKAADTIGLFDVVESLDREKLVHAFRRLADDGARLP 124
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVNTG E QKSG++P FV CR L++ GLM IPP P PHF LL E+
Sbjct: 125 AFFVQVNTGEEAQKSGVLPADAVAFVDWCRNDQHLDILGLMAIPPQDDPPAPHFALLHEL 184
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A E ++ LSMGM+ D+E A+ GAT VR+GS IFG R
Sbjct: 185 AAEAGVSALSMGMSGDYETAVHLGATMVRVGSAIFGPR 222
>gi|302144100|emb|CBI23205.3| unnamed protein product [Vitis vinifera]
Length = 311
Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats.
Identities = 82/231 (35%), Positives = 110/231 (47%), Gaps = 16/231 (6%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L+ +++ +A + R + +VAVSK IR G F EN +QE +
Sbjct: 77 AAALRSVLHRVQQAAERSGRGPHQIRVVAVSKTKSVSLIREVYDSGHRCFGENYVQEIIE 136
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-F 119
K L + D++ FIG+LQSNKV + V V+ETV EK A L + R
Sbjct: 137 KAPQLPE--DIEWHFIGNLQSNKVKPLLTGVPNLAVVETVDDEKIADRLDRMVATIGRKP 194
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPH-FYLL 177
L V +QVNT E KSG+ P + V L GLM I P F L
Sbjct: 195 LKVMVQVNTSGEESKSGVDPAACVELVKHVALGCPNLEFGGLMTIGMLDYTSTPENFKTL 254
Query: 178 S----EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E+ + +T +LSMGM+ DFELAI G+T+VRIGS IFG R
Sbjct: 255 ANCRSEVCKSLGITEEQCELSMGMSGDFELAIEMGSTNVRIGSTIFGAREY 305
>gi|257457757|ref|ZP_05622918.1| pyridoxal phosphate enzyme, YggS family [Treponema vincentii ATCC
35580]
gi|257444807|gb|EEV19889.1| pyridoxal phosphate enzyme, YggS family [Treponema vincentii ATCC
35580]
Length = 240
Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats.
Identities = 68/228 (29%), Positives = 107/228 (46%), Gaps = 12/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++ +I + A R V L+ +K V+ ++I A SCG + ENK+QE
Sbjct: 4 TIQENIRHIMGRINTACKKAGRDPKEVQLLLATKTVEPERILQAFSCGCTLIGENKVQEL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ L FIG LQSNK+ E++ I+++ TA L + ++ R +
Sbjct: 64 HDKYEALSAVPHTA-HFIGHLQSNKIKEVIRYVQCIQSIDNLDTAQKLEQRLAQEGRSIE 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+ +QVNT E K G P ++ V LN+ G M I G + F L
Sbjct: 123 ILVQVNTSAEESKFGCKPGDAENLVKAIAALPHLNIRGFMTIGLFSGEEDKVRACFRCLK 182
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ LSMGM+ D E+AI G+T +RIG+ +FGER
Sbjct: 183 HVQKQVAEMKLPNVSTDVLSMGMSGDLEIAIEEGSTMLRIGTAVFGER 230
>gi|218887298|ref|YP_002436619.1| alanine racemase domain protein [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758252|gb|ACL09151.1| alanine racemase domain protein [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 272
Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats.
Identities = 78/253 (30%), Positives = 116/253 (45%), Gaps = 33/253 (13%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
SL ++ + +++ +A A R V+LVAVSK + + + GQ F EN +QEA
Sbjct: 19 SLLDRWAAVRARVDGAARAAGRDPAGVTLVAVSKFHPAASVAALSAAGQRDFGENYVQEA 78
Query: 62 KKKWIPLRKEWDV----------------QLRFIGSLQSNKVSEIVSLFDVIETVSREKT 105
+K + + + FIG LQSNK ++V F ++ TV E
Sbjct: 79 LRKQAEVADMTGMGPDAASGTKVAGGAAPRWHFIGHLQSNKAKDVVGRFALLHTVDSEAL 138
Query: 106 ASLLSLE--------MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNV 157
A L + + +QVN G E QKSG+ P+ +L +
Sbjct: 139 ARKLDQRLSGMPAQGAGGVAPGQDILLQVNIGDEEQKSGVDPDDLPALTDAVLALPRLRL 198
Query: 158 EGLMCIPPAMGN---PKPHFYLLSEIARECK------LTKLSMGMTRDFELAIASGATSV 208
GLMC+PP + +P+F L E+ L LSMGM+ D E+A+A GAT V
Sbjct: 199 LGLMCMPPIFDDGEASRPYFARLRELRDALSARVGLPLPHLSMGMSHDVEVAVAEGATIV 258
Query: 209 RIGSGIFGERPCQ 221
R+G+ IFG RP +
Sbjct: 259 RVGTDIFGPRPAR 271
>gi|126700237|ref|YP_001089134.1| putative alanine racemase [Clostridium difficile 630]
gi|115251674|emb|CAJ69509.1| putative pyridoxal 5'-phosphate-dependent enzyme [Clostridium
difficile]
Length = 237
Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats.
Identities = 69/231 (29%), Positives = 116/231 (50%), Gaps = 14/231 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L + KI+ +A R ++L+AV+K VD + A+ G ENK QE
Sbjct: 6 SIKDNLSEIRNKIDKAAKKVDRDSKEITLLAVTKTVDVDLVNEAMREGITSVGENKPQEL 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ + + + IG+LQ+NKV I+ +I ++ R + + +R +
Sbjct: 66 ARKYDIIGDK--LNWHLIGTLQTNKVKYIIDKVCMIHSLDRIALCEEIQKRAEQINREID 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGNPKPH---FYLL 177
+QVN E K G+ + DFV +KY + ++GLM + P + + F L
Sbjct: 124 CLVQVNISKEESKHGLDREEVVDFVKEVSEKYKNIKIKGLMTMAPFIEDEDEIRGVFKGL 183
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+++++ K + LSMGM+ D+E+AI GAT VR+G+ IFGER
Sbjct: 184 KDLSKQIKELNIPNVGMDVLSMGMSHDYEIAIEEGATIVRVGTSIFGERNY 234
>gi|170760427|ref|YP_001786888.1| hypothetical protein CLK_0946 [Clostridium botulinum A3 str. Loch
Maree]
gi|169407416|gb|ACA55827.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum A3
str. Loch Maree]
Length = 223
Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats.
Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 20/230 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + + K+ + V+L+ VSK + I A G F ENK+QE
Sbjct: 1 MEIEDNINSIKKSL----------PKDVTLIGVSKTKPVEYIEEAYEAGLRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K +++ D++ IG LQ NKV IV +I ++ + + + KQ++
Sbjct: 51 LIDKIEYFKEKEDIRWHLIGHLQRNKVKYIVGKVHLIHSLDSIRLLEEIEDKYKKQNKIA 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK--PHFYLLS 178
V IQ+N G E K GI ++ + + + +GLM I P N + +F +
Sbjct: 111 NVLIQINIGKEESKYGIYKEDLENMIDAIEKCENVKAKGLMTIIPKGSNEECAKYFRQMK 170
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
EI + ++ LSMGMT D+ +AI G+ +R+G GIFG+R
Sbjct: 171 EIFSALQNKSFKNIEVNYLSMGMTGDYPIAIKEGSNMIRVGQGIFGKRNY 220
>gi|116054125|ref|YP_788568.1| hypothetical protein PA14_05160 [Pseudomonas aeruginosa UCBPP-PA14]
gi|115589346|gb|ABJ15361.1| putative PLP dependent enzyme [Pseudomonas aeruginosa UCBPP-PA14]
Length = 230
Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats.
Identities = 74/224 (33%), Positives = 97/224 (43%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +I +A A R +V L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAENIAKVAARIREAAQAAGRDPATVGLLAVSKTKPAAAVREAHAAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + FIG +QSNK I F + +V R K A LS + L
Sbjct: 63 LGKQAELADLP-LNWHFIGPIQSNKTRPIAEHFQWVHSVDRLKIAQRLSEQRPAGLPLLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE-- 179
V +QVN E KSG P +Q L + GLM IP +
Sbjct: 122 VCLQVNVSGEASKSGCAPEDLPALAEAVKQLPNLRLRGLMAIPEPTAERAAQHAAFARLR 181
Query: 180 ---IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ L LSMGM+ D E AI GAT VRIG+ +FG R
Sbjct: 182 ELLLDLNLGLDTLSMGMSDDLEAAIGEGATWVRIGTALFGARDY 225
>gi|296140431|ref|YP_003647674.1| alanine racemase domain protein [Tsukamurella paurometabola DSM
20162]
gi|296028565|gb|ADG79335.1| alanine racemase domain protein [Tsukamurella paurometabola DSM
20162]
Length = 259
Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats.
Identities = 73/223 (32%), Positives = 106/223 (47%), Gaps = 9/223 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L + +I+ +A A R V L+ VSK V ++R+A++ G ENK+QEAK+
Sbjct: 26 AANLAAVRARIDAAATRAGRAPSDVRLLPVSKTVPQDRLRLAVAAGCTELGENKVQEAKR 85
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K L V IG LQ+NK ++ + + + + A L + R L VY
Sbjct: 86 KSEELAD-LAVAWAVIGHLQTNKAKDVAAFAAEFQALDSVRVAEALDRRLQAAGRGLDVY 144
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVNT E K G+ P DF+ L V G M + + + F +L +
Sbjct: 145 VQVNTSAEESKYGLSPGAVPDFLRELPAFASLRVRGFMTLAEFSADEARVRKCFRVLRRV 204
Query: 181 AREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LT+LSMGM+ D+E+AI GAT VR+G IFG R
Sbjct: 205 RDRALDVDSGLTELSMGMSGDYEIAIEEGATCVRVGQAIFGSR 247
>gi|120435023|ref|YP_860709.1| alanine racemase [fragment] [Gramella forsetii KT0803]
gi|117577173|emb|CAL65642.1| alanine racemase [fragment] [Gramella forsetii KT0803]
Length = 219
Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats.
Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + ++ +SV LVA+SK ++ + A + GQ IF ENK+QE
Sbjct: 1 MSISKNIEKYINEL----------PESVKLVAISKTKPNEDLMEAYNAGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KW L K D+Q +G Q NKV + ++I V K ++ + R +
Sbjct: 51 MTDKWEELPK--DIQWHMVGHTQRNKVKYMAPYVNLIHAVDSLKLLKEINKRARQNERTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNPKP---HFY 175
+Q+ E K G+ + + + + +N+ GLM + + + F
Sbjct: 109 DCLLQIKIAEEDSKFGLDSEEANEILKSEAYSKMEHVNIIGLMGMATFTDDEEQVKSEFN 168
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + + K L +LSMGM+ D+++A+A G T VRIGS IFG R
Sbjct: 169 YLKSVFDKFKEQYPELKELSMGMSGDYQVAVACGTTMVRIGSSIFGARNY 218
>gi|212691474|ref|ZP_03299602.1| hypothetical protein BACDOR_00966 [Bacteroides dorei DSM 17855]
gi|212665954|gb|EEB26526.1| hypothetical protein BACDOR_00966 [Bacteroides dorei DSM 17855]
Length = 222
Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ ++ V LVAVSK ++ + A + GQ IF E+ +QE
Sbjct: 1 MSIQANLKEVLSEL----------PSGVRLVAVSKFHPNEALEEAYAAGQRIFGESHVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L K D++ FIG LQ+NKV + +I + K ++ + K R +
Sbjct: 51 MTQKYETLPK--DIEWHFIGHLQTNKVKYMAPYVAMIHAIDSYKLLVEVNKQASKVHRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNPKP---HFY 175
P +Q++ E K G ++ ++ + + + + G+M + + + + F
Sbjct: 109 PCLLQIHIAQEETKFGFSFDECREMLDTGGWKDLKNVRLSGVMGMATNVDDDEQIKREFC 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ +E K ++SMGM+ D+ LA+ +G+T VR+GS IFGER
Sbjct: 169 SLNTFFKEIKQSYFSDSEYFKEISMGMSHDYPLAVEAGSTLVRVGSKIFGERNY 222
>gi|308188044|ref|YP_003932175.1| UPF0001 protein yggS [Pantoea vagans C9-1]
gi|308058554|gb|ADO10726.1| UPF0001 protein yggS [Pantoea vagans C9-1]
Length = 235
Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats.
Identities = 75/227 (33%), Positives = 109/227 (48%), Gaps = 8/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ LQ +Q+I +A R + ++L+AVSK + + A + GQ+ F EN +QE
Sbjct: 3 SIQQNLQQVRQRIAAAAARCGRAPEEITLLAVSKTKPASAVEEAFAAGQIAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L ++ FIG LQSNK + F T+ R++ A L+ + L
Sbjct: 63 VEKVQALAAHPELAWHFIGPLQSNKSRLVAKHFAWCHTIDRQRIAQRLNDQRPASLPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQVN E KSGIM QL + GLM IP A + + + ++A
Sbjct: 123 VLIQVNISDENSKSGIMLEAVSGLAEQIAALPQLRLRGLMAIPAAESDYQRQLAVCQQMA 182
Query: 182 R--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 183 EAFRQLQQHYPQADTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 229
>gi|224535468|ref|ZP_03676007.1| hypothetical protein BACCELL_00331 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522934|gb|EEF92039.1| hypothetical protein BACCELL_00331 [Bacteroides cellulosilyticus
DSM 14838]
Length = 222
Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats.
Identities = 67/234 (28%), Positives = 108/234 (46%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ LQ ++ D V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MNIAENLQQVLSEL----------PDGVRLVAVSKFHPNEAIEEAYRTGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D++ FIG LQ+NK+ IV +I + K ++ + K + +
Sbjct: 51 MTAKYESLPK--DIEWHFIGHLQTNKIKFIVPYVALIHGIDSYKLLVEVNKQAAKAGKVV 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ--KYQLNVEGLMCIPPAMGN---PKPHFY 175
+Q++ E K G + ++ + + + GLM + + + F
Sbjct: 109 NCLLQLHIAEEETKFGFSFGECREMLAAGEWKTLSNIQLCGLMGMATNTDDNEQIEKEFC 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LS +E K +LSMGM+ D+ AIA+G+T +R+GS IFG+R
Sbjct: 169 SLSSFFKEVKDSWFADTEAFRELSMGMSHDYHQAIAAGSTLIRVGSKIFGDRTY 222
>gi|327405566|ref|YP_004346404.1| hypothetical protein Fluta_3597 [Fluviicola taffensis DSM 16823]
gi|327321074|gb|AEA45566.1| protein of unknown function UPF0001 [Fluviicola taffensis DSM
16823]
Length = 220
Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats.
Identities = 68/232 (29%), Positives = 107/232 (46%), Gaps = 26/232 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL ++L KQ+I V LVAVSK + ++ A GQ +F ENK+QE
Sbjct: 1 MSLADRLTQLKQEI----------PKDVVLVAVSKTKPAALVQEAYDAGQRVFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KW L K D++ IG LQ+NKV I +I +V K ++ + K +R +
Sbjct: 51 LVDKWEVLPK--DIEWHLIGHLQTNKVKFIAPFVSLIHSVDSFKLLQEINKQGEKNNRII 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCR--QKYQLNVEGLMCIPPAMGNPK---PHFY 175
P +Q + E K G + ++ + + +++ GLM + + N + F
Sbjct: 109 PCLLQFHIAQEETKFGFSFEEVEELLQNKEFIEMNHVSITGLMGMASFVENQEQIQDEFR 168
Query: 176 LLSE---------IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +SMGM+ D++LAI G+T +R+GS +FG R
Sbjct: 169 NLHNYFAIIKSNYFKYNPDFKVISMGMSGDYKLAIDEGSTMIRVGSSLFGSR 220
>gi|325203182|gb|ADY98635.1| conserved hypothetical protein TIGR00044 [Neisseria meningitidis
M01-240355]
Length = 228
Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 102/227 (44%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSEQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|224117946|ref|XP_002331519.1| predicted protein [Populus trichocarpa]
gi|222873743|gb|EEF10874.1| predicted protein [Populus trichocarpa]
Length = 238
Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats.
Identities = 79/231 (34%), Positives = 110/231 (47%), Gaps = 16/231 (6%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L+ Q++ +A A R + +VAVSK I+ G F EN QE +
Sbjct: 6 AAALRSVLQRVSQAAEKAGRGSQQIRVVAVSKTKPVSLIKQVYDVGHRCFGENYAQEFIE 65
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-F 119
K L + D++ FIG+LQSNKV + V D++E+V EK A+ L + R
Sbjct: 66 KAPQLPE--DIEWHFIGNLQSNKVKPLLASVPNLDMVESVDDEKIANHLDRAVGNLGRKP 123
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCIPPAMGNPKPH-FYLL 177
L V +QVNT E KSG+ P+ + + L GLM I P F L
Sbjct: 124 LKVLVQVNTSGEESKSGVEPSGCVELAKHVIQSCTNLQFCGLMTIGMLDYTSTPENFKAL 183
Query: 178 S----EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E+ + + +LSMGM+ DFE AI G+T+VRIGS IFG R
Sbjct: 184 ANCRSEVCKALGIPEEQCELSMGMSNDFEQAIEMGSTNVRIGSTIFGPREY 234
>gi|170756777|ref|YP_001781103.1| hypothetical protein CLD_3085 [Clostridium botulinum B1 str. Okra]
gi|169121989|gb|ACA45825.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum B1
str. Okra]
Length = 223
Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats.
Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 20/230 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + + K+ + V+L+ VSK + I A G F ENK+QE
Sbjct: 1 MEIEDNINSIKKSL----------PKDVTLIGVSKTKPVEYIEEAYEAGLRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K +++ D++ IG LQ NKV IV +I ++ + + + KQ++
Sbjct: 51 LIDKIEHFKEKKDIRWHLIGHLQRNKVKYIVGKVYLIHSLDSIRLLEEIEDKYKKQNKIA 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK--PHFYLLS 178
V IQ+N G E K GI ++ + + + +GLM I P + + +F +
Sbjct: 111 NVLIQINIGKEESKYGIYKEDLENMIDAIEKCENVKAKGLMTIIPKGSDEECAKYFRQMK 170
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
EI + ++ LSMGMT D+ +AI G+ +R+G GIFG+R
Sbjct: 171 EIFSALQNKSFKNIEVNYLSMGMTGDYPIAIKEGSNMIRVGQGIFGKRNY 220
>gi|237726241|ref|ZP_04556722.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|229434767|gb|EEO44844.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
Length = 222
Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ ++ V LVAVSK ++ + A + GQ IF E+ +QE
Sbjct: 1 MSIQANLKEVLSEL----------PTEVRLVAVSKFHPNEALEEAYAAGQRIFGESHVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L K D++ FIG LQ+NKV + +I + K ++ + K R +
Sbjct: 51 MTQKYETLPK--DIEWHFIGHLQTNKVKYMAPYVAMIHAIDSYKLLVEVNKQASKVHRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNPKP---HFY 175
P +Q++ E K G ++ ++ + + + + G+M + + + + F
Sbjct: 109 PCLLQIHIAQEETKFGFSFDECREMLDTGGWKDLKNVRLSGVMGMATNVDDDEQIKREFC 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ +E K ++SMGM+ D+ LA+ +G+T VR+GS IFGER
Sbjct: 169 SLNTFFKEIKQSYFSDSEYFKEISMGMSHDYPLAVEAGSTLVRVGSKIFGERNY 222
>gi|262375723|ref|ZP_06068955.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
gi|262309326|gb|EEY90457.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
Length = 234
Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats.
Identities = 75/219 (34%), Positives = 104/219 (47%), Gaps = 7/219 (3%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
+IE + + A R D+V L+AVSK S + GQ F EN LQEA +K L
Sbjct: 15 QVLVQIETACVEAGREADAVQLLAVSKTQPSSVLAEMYQAGQRAFGENYLQEALEKITAL 74
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
KE +++ FIG +Q NK + F + V R A LS + L + IQVN
Sbjct: 75 -KELEIEWHFIGHVQRNKTKALAENFAWVHGVDRLIIAERLSNQRGDDQPALNICIQVNI 133
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA-----MGNPKPHFYLLS-EIAR 182
+ K G P + D V Q + + GLM IP G+ K F + + A
Sbjct: 134 DGQDTKDGCQPAEVADLVAQISQLPNVRLRGLMVIPAPNNPQSFGDAKVLFDAVKVQHAH 193
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
LSMGM+ D AIA+G+T VR+G+ +FG RP +
Sbjct: 194 PEDWDTLSMGMSADMTEAIAAGSTMVRVGTALFGARPKK 232
>gi|325139253|gb|EGC61798.1| hypothetical protein TIGR00044 [Neisseria meningitidis ES14902]
Length = 228
Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 104/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AVSK S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGREPHSVSLIAVSKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPEEAVVLAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AIA GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNAAGVKADVLSMGMSDDMPAAIACGATHVRIGSAIFGKR 227
>gi|15615113|ref|NP_243416.1| hypothetical protein BH2550 [Bacillus halodurans C-125]
gi|10175170|dbj|BAB06269.1| BH2550 [Bacillus halodurans C-125]
Length = 228
Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats.
Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 14/228 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++L+ ++++ + A R D V ++AV+K V + R AL G EN+++
Sbjct: 1 MSVKDQLKQIQEQMNEACERAGRNPDDVHIIAVTKYVSEARTREALEAGITHIGENRVEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K E FIGSLQS KV ++++ FD + ++ R A + + + L
Sbjct: 61 GVEKRRAFPNEG--TWHFIGSLQSKKVKKMIADFDYLHSLDRLSLAKEIDRRLPD-GQAL 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E KSG+ P + F+ + + V GLM + P + +P+ F L
Sbjct: 118 NCFVQVNVSGEQSKSGLKPEEVLPFIEELQTYPSIRVVGLMTMAPFVEDPEDTRWVFREL 177
Query: 178 SEIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ E + +LSMGM+ DF +AI GAT VRIG+ + G+
Sbjct: 178 RHLRDEVQAKRFNHAPCSELSMGMSNDFIVAIEEGATFVRIGTALVGK 225
>gi|163739855|ref|ZP_02147262.1| hypothetical protein RGBS107_05389 [Phaeobacter gallaeciensis
BS107]
gi|161386889|gb|EDQ11251.1| hypothetical protein RGBS107_05389 [Phaeobacter gallaeciensis
BS107]
Length = 218
Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats.
Identities = 92/222 (41%), Positives = 125/222 (56%), Gaps = 6/222 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + + +I + A RPK S L+AVSK+ ++++ L G F EN++QE
Sbjct: 1 MSIQD----IQARIHIAEENAGRPKGSAKLIAVSKVQPNERVEAVLEEGHRCFGENRVQE 56
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW + D+ L IG LQSNK + + LF I T+ R K A L+ +
Sbjct: 57 AAGKWPDFAMRYSDLDLHLIGPLQSNKARQAMELFQSIHTLDRSKLAKALARLAQELGHC 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+++QVNTG E QK+GI P F+ C+ L +EGLMCIPPA P HF LL +
Sbjct: 117 PKLFVQVNTGEEPQKAGIPPRAADAFIRECQDMD-LIIEGLMCIPPADEEPSLHFSLLGK 175
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
IA L+ LSMGM+ DFE A+A GAT VR+GS IFG R +
Sbjct: 176 IAVRNGLSGLSMGMSGDFETAVALGATHVRVGSAIFGARAYE 217
>gi|255656599|ref|ZP_05402008.1| putative alanine racemase [Clostridium difficile QCD-23m63]
Length = 234
Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats.
Identities = 69/231 (29%), Positives = 116/231 (50%), Gaps = 14/231 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L + KI+ +A R ++L+AV+K VD + A+ G ENK QE
Sbjct: 3 SIKDNLSEIRSKIDKAAKKVDRDSKEITLLAVTKTVDVDLVNEAMREGITSVGENKPQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ + + + IG+LQ+NKV I+ +I ++ R + + +R +
Sbjct: 63 ARKYDIIGNK--LNWHLIGTLQTNKVKYIIDKVCMIHSLDRIALCEEIQKRAEQINREID 120
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGNPKP---HFYLL 177
+QVN E K G+ + DFV +KY + ++GLM + P + + F L
Sbjct: 121 CLVQVNISKEESKHGLDREEVVDFVKEVSEKYKNIKIKGLMTMAPFIEDEDEIRGVFKGL 180
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+++++ K + LSMGM+ D+E+AI GAT VR+G+ IFGER
Sbjct: 181 KDLSKQIKELNIPNVGMDVLSMGMSHDYEIAIEEGATIVRVGTSIFGERNY 231
>gi|298530633|ref|ZP_07018035.1| alanine racemase domain protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298510007|gb|EFI33911.1| alanine racemase domain protein [Desulfonatronospira thiodismutans
ASO3-1]
Length = 248
Score = 261 bits (669), Expect = 4e-68, Method: Composition-based stats.
Identities = 78/226 (34%), Positives = 120/226 (53%), Gaps = 10/226 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L ++KIE + + P V+LVAVSK +IR + GQV F EN +QE
Sbjct: 15 MADNLDKVRKKIEMALQKSADPAREVTLVAVSKRQPLDRIRALAAAGQVHFGENYVQEGL 74
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + +++ F GSLQSNK I F ++ ++ K A L + + PV
Sbjct: 75 EKIKDL-ENLEIKWHFTGSLQSNKARFIPGHFSLVHSLDSVKLARALQKKAAELGIVQPV 133
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQVN E+QK+G+ P+ + + + L+V+GLM +PP +P +P+F L +
Sbjct: 134 LIQVNLAGEVQKAGVDPDHVPELIQETGRMDHLDVQGLMLMPPLADDPEESRPYFTGLRK 193
Query: 180 IAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ +L LSMGM++DF A+ GAT VR+GS + G RP
Sbjct: 194 MRDTLEQETGRRLPHLSMGMSQDFVQAVEEGATLVRVGSLLLGPRP 239
>gi|261856426|ref|YP_003263709.1| alanine racemase domain protein [Halothiobacillus neapolitanus c2]
gi|261836895|gb|ACX96662.1| alanine racemase domain protein [Halothiobacillus neapolitanus c2]
Length = 223
Score = 261 bits (668), Expect = 4e-68, Method: Composition-based stats.
Identities = 80/222 (36%), Positives = 112/222 (50%), Gaps = 7/222 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
SL + K +IE ++ RP SV L+AVSK + + S GQ F E+ LQEA
Sbjct: 3 SLHERFSSIKNRIERASHAVGRPDGSVVLIAVSKRQTIEAMAQLASLGQRDFGESYLQEA 62
Query: 62 KKKWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K L + + FIG +QSNK I F + +V R K A L+ + +
Sbjct: 63 LDKQSALADQPVGASIVWHFIGPIQSNKTRGIAENFSWVHSVDRPKIAQRLNDQRPIELP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V I+VN E KSG++P Q V + + +L + GLM IP + F L+
Sbjct: 123 PLNVLIEVNIDGEASKSGVLPEQLPGMVDIFQNLPRLKLMGLMAIPAPGSS--DGFCRLA 180
Query: 179 EIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + L LSMGM+ DFE AIA+G+T VR+GS +FG R
Sbjct: 181 ALNARLESPLPVLSMGMSDDFEAAIAAGSTHVRVGSALFGPR 222
>gi|325145486|gb|EGC67760.1| hypothetical protein TIGR00044 [Neisseria meningitidis M01-240013]
Length = 228
Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|302790652|ref|XP_002977093.1| hypothetical protein SELMODRAFT_106172 [Selaginella moellendorffii]
gi|300155069|gb|EFJ21702.1| hypothetical protein SELMODRAFT_106172 [Selaginella moellendorffii]
Length = 244
Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats.
Identities = 79/231 (34%), Positives = 107/231 (46%), Gaps = 18/231 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ +++ +A + R V++VAVSK IR G F EN +QE K
Sbjct: 15 LRSVYERVRVAAERSGRSASQVNVVAVSKTKPVSLIREVYDAGHRHFGENYVQEFIDKAP 74
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFD---VIETVSREKTASLLSLEMIKQSR-FLPV 122
L D++ FIG LQSNK +V+ ++E + K ASLL + R L V
Sbjct: 75 QLPS--DIRWHFIGHLQSNKAKSLVANVPQLYMVEGIDNFKVASLLDRAVSLLQRNPLKV 132
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNPKPH-FYLLSEI 180
+QVNT E KSG+ P+ + + L GLM I P F L
Sbjct: 133 LVQVNTSGEESKSGVEPSACVELAKQIKADCPNLEFSGLMTIGMQDYTSTPENFKALVNC 192
Query: 181 ARE-CKL-------TKLSMGMTRDFELAIASGATSVRIGSGIFGER--PCQ 221
+ CK +LSMGM+ DFE AI G+T+VRIGS IFG R P +
Sbjct: 193 REDVCKALEIPQSSCELSMGMSGDFEQAIEMGSTNVRIGSTIFGAREYPAK 243
>gi|15895390|ref|NP_348739.1| TIM-barrel fold family protein [Clostridium acetobutylicum ATCC
824]
gi|15025111|gb|AAK80079.1|AE007713_4 Predicted enzyme with a TIM-barrel fold [Clostridium acetobutylicum
ATCC 824]
Length = 221
Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats.
Identities = 76/230 (33%), Positives = 109/230 (47%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + LQ K+KI V+LVAVSK + I+ A G F ENK+QE
Sbjct: 1 MGITYNLQKVKEKI----------PKEVTLVAVSKTKPIEDIKEAYEQGIRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ + DV+ IG LQ NKV IV +I ++ K + +
Sbjct: 51 LMSKYDEMNS--DVRWHLIGHLQVNKVKYIVGKVFLIHSLDSIKLLKEIEKRYTNEGLKA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN--PKPHFYLLS 178
V I VN G E K+GI+ + + C++ +NV+GLM + P + + +F +
Sbjct: 109 DVLIYVNIGREESKTGILEENLEALLDECQKCNSVNVKGLMAVIPVGDDNSNRHYFRKMK 168
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
I + K + LSMGMT D+E+AIA GA VR+G GIFG+R
Sbjct: 169 AIFDDLKHKNIKNVDMKYLSMGMTHDYEIAIAEGANIVRVGEGIFGKRDY 218
>gi|152986073|ref|YP_001345889.1| hypothetical protein PSPA7_0494 [Pseudomonas aeruginosa PA7]
gi|150961231|gb|ABR83256.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
Length = 230
Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats.
Identities = 73/224 (32%), Positives = 97/224 (43%), Gaps = 6/224 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +I +A A R +V L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAENIAKVAARIREAAQAAGRDPATVGLLAVSKTKPAAAVREAHAAGLRDFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + FIG +QSNK I F + +V R K A LS + L
Sbjct: 63 LGKQAELAD-LSLNWHFIGPIQSNKTRPIAEHFQWVHSVDRLKIAQRLSEQRPAGLPPLN 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE-- 179
+ +QVN E KSG P + L + GLM IP +
Sbjct: 122 ICLQVNVSGEASKSGCAPEDLPALAEAVKLLPNLRLRGLMAIPEPTVERAAQHAAFARLR 181
Query: 180 ---IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ L LSMGM+ D E AIA GAT VRIG+ +FG R
Sbjct: 182 ELLLGLNLGLDTLSMGMSDDLEAAIAEGATWVRIGTALFGARDY 225
>gi|146328880|ref|YP_001209130.1| alanine racemase domain-containing protein [Dichelobacter nodosus
VCS1703A]
gi|146232350|gb|ABQ13328.1| alanine racemase domain protein [Dichelobacter nodosus VCS1703A]
Length = 264
Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats.
Identities = 79/218 (36%), Positives = 120/218 (55%), Gaps = 9/218 (4%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
+Q+I +A +R +S+ L+ VSK V+++++R+A SCG I ENK+QEA KW L
Sbjct: 38 EIRQRIVRAAEECQRDPNSIRLLPVSKTVNAQRLRLAHSCGMTILGENKVQEAYDKWQEL 97
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
+ D++ IG LQ+NK + + + K A L + +++R L V+IQVNT
Sbjct: 98 QDT-DLKWAIIGHLQTNKAKYVARFASEFQALDSLKIAEELDKRLQQENRQLDVFIQVNT 156
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIARECK 185
E QK GI P +DFV L + GLM + + + F L ++ + +
Sbjct: 157 SNEPQKYGISPENAEDFVRQLEAFRSLRLRGLMTLAIFSSDKDTVRQCFIRLRQLRDQLQ 216
Query: 186 -----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +LSMGM+ DFELAIA GAT+VR+G +FG R
Sbjct: 217 QINPDIAELSMGMSGDFELAIAEGATTVRVGQALFGAR 254
>gi|262273740|ref|ZP_06051553.1| hypothetical protein VHA_000715 [Grimontia hollisae CIP 101886]
gi|262222155|gb|EEY73467.1| hypothetical protein VHA_000715 [Grimontia hollisae CIP 101886]
Length = 206
Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats.
Identities = 74/202 (36%), Positives = 95/202 (47%), Gaps = 9/202 (4%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-EWDVQLRFIGSLQSNKV 87
L+AVSK + I A+ GQ F EN +QE +K R ++ FIG +QSNK
Sbjct: 2 QLLAVSKTKPIEAIADAVEAGQTRFGENYVQEGVEKITHFRDIHPHLEWHFIGPIQSNKT 61
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
I FD + ++ R K A LS + L V IQVNT E KSGI + K
Sbjct: 62 RLIAEHFDWVHSIDRSKVAHRLSEQRPADLPPLQVLIQVNTSGEASKSGIGFDDVKALAE 121
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIAR-----ECKLTKLSMGMTRDFEL 199
L + GLMCIP + + F LS + LSMGM+ D +
Sbjct: 122 EIDALPNLTLRGLMCIPQPEEDHQKQLDAFAPLSALFETMKASRPDFDTLSMGMSGDMDA 181
Query: 200 AIASGATSVRIGSGIFGERPCQ 221
AIASG+T VRIG+ IFG R
Sbjct: 182 AIASGSTMVRIGTAIFGARDYS 203
>gi|149917541|ref|ZP_01906038.1| hypothetical protein PPSIR1_25521 [Plesiocystis pacifica SIR-1]
gi|149821604|gb|EDM81002.1| hypothetical protein PPSIR1_25521 [Plesiocystis pacifica SIR-1]
Length = 226
Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 13/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ +L ++++ + + A+R V LVAVSK ++ + A GQ F EN QE
Sbjct: 1 MNTAQRLLAIRERLHAACLAAERDPSQVHLVAVSKTFPAEALDPAYELGQRHFGENYAQE 60
Query: 61 AKKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+ K D+ FIG LQSNK+ I + V + A L+
Sbjct: 61 LRDKAERFEGLGVTDLSWHFIGRLQSNKIKHIAPRARYVHAVEKRSHAEALAKHATG--- 117
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFY 175
L +++ VN G E K G++P + L++ GLMC+PP +P+ P+F
Sbjct: 118 PLSIFLSVNIGEEASKGGVLPTEVLARAEELDAVEGLDLCGLMCMPPRCEDPEDAAPYFA 177
Query: 176 LLSEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++E+A +L +LSMGM+ DF +A+ GAT VR+GS IFG+R
Sbjct: 178 RMAELAEAGRAHGLQLRELSMGMSHDFHVAVRYGATFVRVGSAIFGKR 225
>gi|148379437|ref|YP_001253978.1| hypothetical protein CBO1465 [Clostridium botulinum A str. ATCC
3502]
gi|153931706|ref|YP_001383816.1| hypothetical protein CLB_1490 [Clostridium botulinum A str. ATCC
19397]
gi|153937054|ref|YP_001387366.1| hypothetical protein CLC_1502 [Clostridium botulinum A str. Hall]
gi|168182394|ref|ZP_02617058.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum Bf]
gi|237794803|ref|YP_002862355.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum Ba4
str. 657]
gi|148288921|emb|CAL83008.1| putative alanine racemase [Clostridium botulinum A str. ATCC 3502]
gi|152927750|gb|ABS33250.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum A
str. ATCC 19397]
gi|152932968|gb|ABS38467.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum A
str. Hall]
gi|182674285|gb|EDT86246.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum Bf]
gi|229260689|gb|ACQ51722.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum Ba4
str. 657]
Length = 223
Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats.
Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 20/230 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + + K+ + V+L+ VSK + I A G F ENK+QE
Sbjct: 1 MEIEDNINSIKKSL----------PKDVTLIGVSKTKPVEYIEEAYEAGLRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K +++ D++ IG LQ NKV IV +I ++ + + + KQ++
Sbjct: 51 LIDKIEYFKEKKDIRWHLIGHLQRNKVKYIVGKVYLIHSLDSIRLLEEIEDKYKKQNKIA 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK--PHFYLLS 178
V IQ+N G E K GI + + + + + +GLM I P + + +F +
Sbjct: 111 NVLIQINIGKEESKYGIYKEELGNMIDAIEKCENVKAKGLMTIIPKGSDEECAKYFRQMK 170
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
EI + ++ LSMGMT D+ +AI G+ +R+G GIFG+R
Sbjct: 171 EIFSALQNKSFKNIEVNYLSMGMTGDYPIAIKEGSNMIRVGQGIFGKRNY 220
>gi|115350675|ref|YP_772514.1| hypothetical protein Bamb_0621 [Burkholderia ambifaria AMMD]
gi|115280663|gb|ABI86180.1| Protein of unknown function UPF0001 [Burkholderia ambifaria AMMD]
Length = 268
Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 107/231 (46%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS +L ++I ++A A R +VSL+AVSK + +R A + GQ F EN +Q
Sbjct: 37 MSDFAARLDSVHRRIADAARAAGRDPATVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQ 96
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L ++ FIG LQSNK + FD + +V R K A L+ +
Sbjct: 97 ESIDKIDALADLRTGLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLAEQRPAHLP 156
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V +QVN E KSG+ P + L + GLM IP G+
Sbjct: 157 PLNVCVQVNISGEASKSGVAPADVAEVARAVAALPTLRLRGLMAIPEPAGDTDAQRAPHR 216
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+ GAT VR+G+ +FG R
Sbjct: 217 ALRALFDTLRADGLPLDTLSMGMSADLEAAVLEGATIVRVGTALFGARDYS 267
>gi|315646043|ref|ZP_07899164.1| alanine racemase domain protein [Paenibacillus vortex V453]
gi|315278804|gb|EFU42118.1| alanine racemase domain protein [Paenibacillus vortex V453]
Length = 229
Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 112/228 (49%), Gaps = 13/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL ++ +Q+I + + R ++ V+++AV+K V K L G EN+ Q+
Sbjct: 1 MSLMERIDQVEQRITEACARSGRDRNEVNMIAVTKYVSLDKTASVLDQGLQHIGENRWQD 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A++KW L FIG LQ+NKV +++ F I ++ R A L + +
Sbjct: 61 AQEKWNALGDRG--TWHFIGHLQTNKVRDVIDKFQYIHSLDRLSLAHELEKRAAALNLQV 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
++QVN E K G+ P + +F+ + V GLM + P +P F L
Sbjct: 119 SAFMQVNISGEESKYGLAPEKAAEFLKEINSLSHVKVTGLMTMAPYESSAEQTRPVFRGL 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ E LT+LSMGM+ DFE+AI GAT VR+GS + G+
Sbjct: 179 RQLRDELNEQALTLEPLTELSMGMSNDFEVAIEEGATWVRLGSILVGK 226
>gi|254673073|emb|CBA07735.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
Length = 228
Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGRDPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + T+ R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTICRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A G+ F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPEEAVVLAVEVAKLPNIVVRGLMCVAKAGGSEAELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|302338974|ref|YP_003804180.1| alanine racemase domain protein [Spirochaeta smaragdinae DSM 11293]
gi|301636159|gb|ADK81586.1| alanine racemase domain protein [Spirochaeta smaragdinae DSM 11293]
Length = 234
Score = 261 bits (668), Expect = 5e-68, Method: Composition-based stats.
Identities = 72/227 (31%), Positives = 115/227 (50%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I +A A R + L+AV+K + + A G +F EN++QEA
Sbjct: 8 IAGNIARIQDEIAEAAHKAGRDPGDIQLMAVTKTHPFEDVLAAYQAGIRLFGENRVQEAV 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L D++L IG LQSNKV +IV +E++ + TA L+ + + +
Sbjct: 68 GKYT-LPLPADMKLHMIGHLQSNKVKQIVPFVQCVESIDKVATAEELNKRAQVSGKSIDI 126
Query: 123 YIQVNTGYEIQKSGIMP-NQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+VNT E+ K+G + D + + L V GLM I P G+ + F LL
Sbjct: 127 MFEVNTSGEVSKNGFSEYEELSDALGAVLELAALRVTGLMTIGPLGGDEGQIRNAFILLR 186
Query: 179 EIAR-------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + +L +LSMGM+ DF +A+A GAT VR+G+ IFG R
Sbjct: 187 SMSDRLSTEYPQVELRELSMGMSGDFPIAVAEGATIVRVGTAIFGRR 233
>gi|295135068|ref|YP_003585744.1| alanine racemase [Zunongwangia profunda SM-A87]
gi|294983083|gb|ADF53548.1| alanine racemase [Zunongwangia profunda SM-A87]
Length = 219
Score = 261 bits (668), Expect = 6e-68, Method: Composition-based stats.
Identities = 63/230 (27%), Positives = 109/230 (47%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ ++ ++ D+V LVA+SK ++ + A GQ IF ENK+QE
Sbjct: 1 MNIAENIKKYRDQL----------PDTVDLVAISKTKPNEDLMEAYEVGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KW L K D++ +G +Q NKV + +I V K ++ + K R +
Sbjct: 51 MTDKWEALPK--DIEWHMVGHVQRNKVKYMAPYVGLIHAVDSLKLLKEINKQAKKHDRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNPK---PHFY 175
+Q+ E K GI + ++ + + + V GLM + N + F
Sbjct: 109 RCLLQIKIAEEDSKFGISAGEAEEILQSETYKTFENVAVVGLMGMATHTDNDEKVAEEFD 168
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + ++ + + +LSMGM+ D+++A+ G+T VRIGS IFG R
Sbjct: 169 YLHSVFKDFRVKYPAIKELSMGMSGDYKIAVKHGSTMVRIGSSIFGARNY 218
>gi|53714239|ref|YP_100231.1| hypothetical protein BF2949 [Bacteroides fragilis YCH46]
gi|253564755|ref|ZP_04842211.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|265766269|ref|ZP_06094310.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|52217104|dbj|BAD49697.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
gi|251946220|gb|EES86597.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|263253937|gb|EEZ25402.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|301163769|emb|CBW23324.1| putative racemase [Bacteroides fragilis 638R]
Length = 222
Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats.
Identities = 67/232 (28%), Positives = 107/232 (46%), Gaps = 26/232 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L+ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MNVTDNLKQVLAEL----------PSGVRLVAVSKFHPNEAIEEAYRAGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D++ FIG LQ+NK+ + +I + K + ++ + IK R +
Sbjct: 51 MTGKYESLPK--DIEWHFIGHLQTNKIKYMAPYVSMIHGIDSYKLLAEVNKQAIKAERVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIPPAMG---NPKPHFY 175
+Q++ E K G ++ K+ + + + GLM + + F
Sbjct: 109 RCLLQIHIAQEETKFGFSFDECKEMLNAAEWKALANIQICGLMGMATNTDSKEQIEREFR 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ E K +LSMGM+ D+ LAI G+T VR+GS IFGER
Sbjct: 169 SLNCFFHEVKKQYFANEPTFCELSMGMSHDYHLAIKEGSTLVRVGSKIFGER 220
>gi|296449947|ref|ZP_06891711.1| YggS family pyridoxal phosphate enzyme [Clostridium difficile
NAP08]
gi|296878329|ref|ZP_06902337.1| YggS family pyridoxal phosphate enzyme [Clostridium difficile
NAP07]
gi|296261217|gb|EFH08048.1| YggS family pyridoxal phosphate enzyme [Clostridium difficile
NAP08]
gi|296430627|gb|EFH16466.1| YggS family pyridoxal phosphate enzyme [Clostridium difficile
NAP07]
Length = 237
Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats.
Identities = 69/231 (29%), Positives = 116/231 (50%), Gaps = 14/231 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L + KI+ +A R ++L+AV+K VD + A+ G ENK QE
Sbjct: 6 SIKDNLSEIRSKIDKAAKKVDRDSKEITLLAVTKTVDVDLVNEAMREGITSVGENKPQEL 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ + + + IG+LQ+NKV I+ +I ++ R + + +R +
Sbjct: 66 ARKYDIIGNK--LNWHLIGTLQTNKVKYIIDKVCMIHSLDRIALCEEIQKRAEQINREID 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGNPKPH---FYLL 177
+QVN E K G+ + DFV +KY + ++GLM + P + + F L
Sbjct: 124 CLVQVNISKEESKHGLDREEVVDFVKEVSEKYKNIKIKGLMTMAPFIEDEDEIRGVFKGL 183
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+++++ K + LSMGM+ D+E+AI GAT VR+G+ IFGER
Sbjct: 184 KDLSKQIKELNIPNVGMDVLSMGMSHDYEIAIEEGATIVRVGTSIFGERNY 234
>gi|325135265|gb|EGC57888.1| hypothetical protein TIGR00044 [Neisseria meningitidis M13399]
gi|325137262|gb|EGC59856.1| hypothetical protein TIGR00044 [Neisseria meningitidis M0579]
Length = 228
Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 102/227 (44%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|237712085|ref|ZP_04542566.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|265751787|ref|ZP_06087580.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. 3_1_33FAA]
gi|229453406|gb|EEO59127.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263236579|gb|EEZ22049.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. 3_1_33FAA]
Length = 222
Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ ++ V LVAVSK ++ + A + GQ IF E+ +QE
Sbjct: 1 MSIQANLKEVLSEL----------PTGVRLVAVSKFHPNEALEEAYAAGQRIFGESHVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L K D++ FIG LQ+NKV + +I + K ++ + K R +
Sbjct: 51 MTQKYETLPK--DIEWHFIGHLQTNKVKYMAPYVAMIHAIDSYKLLVEVNKQASKVHRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNPKP---HFY 175
P +Q++ E K G ++ ++ + + + + G+M + + + + F
Sbjct: 109 PCLLQIHIAQEETKFGFSFDECREMLDTGGWKDLKNVRLSGVMGMATNVDDDEQIKREFC 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ +E K ++SMGM+ D+ LA+ +G+T VR+GS IFGER
Sbjct: 169 SLNTFFKEIKQSYFSDSEYFKEISMGMSHDYPLAVEAGSTLVRVGSKIFGERNY 222
>gi|256819743|ref|YP_003141022.1| alanine racemase domain-containing protein [Capnocytophaga ochracea
DSM 7271]
gi|256581326|gb|ACU92461.1| alanine racemase domain protein [Capnocytophaga ochracea DSM 7271]
Length = 241
Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats.
Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 13/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + + +Q+I N+ R + V L+ +K V ++I+VAL+ G + AENK+QE
Sbjct: 3 NILQNIALVQQRIANTCERVGRKPEEVKLLLATKTVTPERIKVALNAGYTLIAENKVQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFL 120
K+K+ L+ FIG LQ+NK+ +I+ +E+V R A L + + + L
Sbjct: 63 KEKYEALKDTPHTN-HFIGHLQTNKIKDILRYEVSCVESVDRLDLAQKLHNRLESEGKEL 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
++IQVNT E K G P++ + V L+++GLM I + F LL
Sbjct: 122 DIFIQVNTSNEESKFGADPSEVLNLVKQVATLPTLHIKGLMTIGLFSAETEKVRACFKLL 181
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +E +LSMGM+ D E AI GAT VR+G+ IFG+R
Sbjct: 182 KHLQQEIIALNLPNVDPRELSMGMSGDLETAIEEGATIVRVGTAIFGKR 230
>gi|150006349|ref|YP_001301093.1| hypothetical protein BVU_3868 [Bacteroides vulgatus ATCC 8482]
gi|294776254|ref|ZP_06741739.1| pyridoxal phosphate enzyme, YggS family [Bacteroides vulgatus
PC510]
gi|149934773|gb|ABR41471.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
gi|294449937|gb|EFG18452.1| pyridoxal phosphate enzyme, YggS family [Bacteroides vulgatus
PC510]
Length = 222
Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ ++ V LVAVSK ++ + A + GQ IF E+ +QE
Sbjct: 1 MSIQANLKEVLSEL----------PAGVRLVAVSKFHPNEALEEAYAAGQRIFGESHVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L K D++ FIG LQ+NKV + +I + K ++ + K R +
Sbjct: 51 MTQKYETLPK--DIEWHFIGHLQTNKVKYMAPYVAMIHAIDSYKLLVEVNKQASKVHRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNPKP---HFY 175
P +Q++ E K G ++ ++ + + + + G+M + + + + F
Sbjct: 109 PCLLQIHIAQEETKFGFSFDECREMLDTGGWKDLKNVRLSGVMGMATNVDDDEQIKREFC 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ +E K ++SMGM+ D+ LA+ +G+T VR+GS IFGER
Sbjct: 169 SLNTFFKEIKQNYFSDSEYFKEISMGMSHDYPLAVEAGSTLVRVGSKIFGERNY 222
>gi|329118482|ref|ZP_08247187.1| alanine racemase domain protein [Neisseria bacilliformis ATCC
BAA-1200]
gi|327465423|gb|EGF11703.1| alanine racemase domain protein [Neisseria bacilliformis ATCC
BAA-1200]
Length = 238
Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 106/227 (46%), Gaps = 8/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + Q QK+ +A A RP +SV LVAVSK + IR + G F EN +QE
Sbjct: 3 TLQHNYQNLVQKLAAAAQKAGRPSESVRLVAVSKTFPADDIRAVYAAGARDFGENYIQEW 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D+ IG +QSNK + + T+ R KTA LS + + L
Sbjct: 63 LAKADDLADLPDIVWHIIGDVQSNKTKAVAERAHWVHTIGRLKTAQRLSAQRPSEMPPLQ 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
V ++VN E K G+ P + + L V GLMC+ A + F +
Sbjct: 123 VCVEVNIAGEAAKHGVPPAEAVALACEVAKLPNLRVRGLMCVAEAGADGAALAEQFGTMQ 182
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + LSMGM+ D+E A+A GAT VRIGS +FG R
Sbjct: 183 KLLADLNAVGVAADVLSMGMSGDWETAVACGATHVRIGSAVFGRRDY 229
>gi|254805871|ref|YP_003084092.1| hypothetical protein NMO_1956 [Neisseria meningitidis alpha14]
gi|254669413|emb|CBA08616.1| conserved hypothetical protein [Neisseria meningitidis alpha14]
gi|261391600|emb|CAX49038.1| conserved hypothetical protein [Neisseria meningitidis 8013]
gi|325207100|gb|ADZ02552.1| conserved hypothetical protein TIGR00044 [Neisseria meningitidis
NZ-05/33]
Length = 228
Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 102/227 (44%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSEQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|71064845|ref|YP_263572.1| hypothetical protein Psyc_0268 [Psychrobacter arcticus 273-4]
gi|71037830|gb|AAZ18138.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
Length = 251
Score = 261 bits (667), Expect = 7e-68, Method: Composition-based stats.
Identities = 76/228 (33%), Positives = 112/228 (49%), Gaps = 13/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L Q K ++ + A R SV+L+AVSK ++ + GQ F EN LQEA
Sbjct: 25 NLTENWQQVKAQVAQACEQALRAPSSVTLLAVSKTKSAEMVATLARQGQYDFGENYLQEA 84
Query: 62 KKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K L + + +IGS+Q NK +I FD ++T+ R+ A L+ +
Sbjct: 85 IEKIQLLHEQVECEHIVWHYIGSIQRNKTRDIAEHFDWVQTLERDIIAKRLNNQRPDGML 144
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V IQ+N E KSG +P Q + +I + +L + GLM I PA N F
Sbjct: 145 PLNVLIQINIDNEDTKSGCLPEQLPELIIDIKNYKRLQLRGLM-IIPAKANTNA-FKRTK 202
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + K LSMGM+ D AIA+G+T VR+G+ IFG R
Sbjct: 203 QLFDDIKRTHPELSQWDTLSMGMSDDMTDAIANGSTMVRVGTAIFGAR 250
>gi|119356538|ref|YP_911182.1| alanine racemase domain-containing protein [Chlorobium
phaeobacteroides DSM 266]
gi|119353887|gb|ABL64758.1| alanine racemase domain protein [Chlorobium phaeobacteroides DSM
266]
Length = 229
Score = 261 bits (667), Expect = 7e-68, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 114/227 (50%), Gaps = 10/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L +++I ++ A R V L+AVSK ++ +R A GQ+ F E+ +QE
Sbjct: 3 SIASNLNRIREQIGTLSVKAGREPSDVRLIAVSKTKPARLVREAFDAGQIEFGESYVQEF 62
Query: 62 KKKWI-PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K PL + +Q FIG LQSNK+ I ++ + R TA+ LS ++Q+
Sbjct: 63 LEKRDDPLLQGLPLQWHFIGHLQSNKIRSIAGKVALVHGIDRLSTAAELSRRSMQQNLHT 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLSE 179
++VNT E K GI P+ + + + GLM I P + F L
Sbjct: 123 EFLLEVNTSGEQTKYGISPDVLLSEAEKIFKLPNIALRGLMTIASPDTDLARKEFRELRN 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K LT+LSMGM++DFE AI GAT +RIG+ IFG R
Sbjct: 183 LLEALKKNAPDPTLLTELSMGMSQDFESAIEEGATIIRIGTAIFGWR 229
>gi|261405677|ref|YP_003241918.1| alanine racemase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|261282140|gb|ACX64111.1| alanine racemase domain protein [Paenibacillus sp. Y412MC10]
Length = 240
Score = 261 bits (667), Expect = 7e-68, Method: Composition-based stats.
Identities = 70/228 (30%), Positives = 110/228 (48%), Gaps = 13/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+SL ++ +Q+I + + R ++ V+++AV+K V L G + EN+ Q+
Sbjct: 12 LSLKERIDQVEQRITEACARSGRDRNDVNMIAVTKYVSLDMTASVLDHGLLHIGENRWQD 71
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+ KW L FIG LQ+NKV +++ F I ++ R A L + +
Sbjct: 72 AQAKWNALGNRG--TWHFIGHLQTNKVRDVIDKFQYIHSLDRLSLAHELEKRAAALNLQV 129
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
+QVN E K G+ P Q +F+ + V GLM + P +P F L
Sbjct: 130 SALMQVNISGEESKYGLPPEQAAEFLKEINSLSHVKVTGLMTMAPYESSAEQTRPVFRGL 189
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ E LT+LSMGM+ DFE+AI GAT VR+GS + G+
Sbjct: 190 RQLRDELNEQALTAEPLTELSMGMSNDFEVAIEEGATWVRLGSILVGK 237
>gi|149185001|ref|ZP_01863318.1| hypothetical protein ED21_18147 [Erythrobacter sp. SD-21]
gi|148831112|gb|EDL49546.1| hypothetical protein ED21_18147 [Erythrobacter sp. SD-21]
Length = 221
Score = 261 bits (667), Expect = 7e-68, Method: Composition-based stats.
Identities = 82/215 (38%), Positives = 116/215 (53%), Gaps = 2/215 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + I + A+R ++LVA+SK + I L G F EN++QEA +KW
Sbjct: 8 LEQVRSSIAQACNRARRDPGDITLVAISKRHTAATIEPLLIEGHRHFGENRVQEAAEKWP 67
Query: 67 PLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ VQL +G LQSNK E +LFDVI ++ R L+ K R +P ++Q
Sbjct: 68 ALREAHPAVQLHLVGQLQSNKAEEAAALFDVIHSLDRPSLVKALAKAFDKTGRLVPCFVQ 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
V+ G E QK G + R + + GLMC+PPA P P F L ++AR+
Sbjct: 128 VDVGDEPQKGGCPVGDLPALLTQARDAD-IPLAGLMCLPPADIEPAPFFAFLDKLARDHG 186
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L SMGM+ D+E AI GAT +R+G+ +FGERP
Sbjct: 187 LEGRSMGMSGDYETAIMLGATHIRVGTALFGERPA 221
>gi|153940535|ref|YP_001390813.1| hypothetical protein CLI_1549 [Clostridium botulinum F str.
Langeland]
gi|168180123|ref|ZP_02614787.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum
NCTC 2916]
gi|226948801|ref|YP_002803892.1| hypothetical protein TIGR00044 [Clostridium botulinum A2 str.
Kyoto]
gi|152936431|gb|ABS41929.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum F
str. Langeland]
gi|182669171|gb|EDT81147.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum
NCTC 2916]
gi|226841352|gb|ACO84018.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum A2
str. Kyoto]
gi|295318882|gb|ADF99259.1| conserved hypothetical protein TIGR00044 [Clostridium botulinum F
str. 230613]
gi|322805782|emb|CBZ03347.1| hypothetical protein YggS, proline synthase co-transcribed
bacterial homolog PROSC [Clostridium botulinum H04402
065]
Length = 223
Score = 261 bits (667), Expect = 7e-68, Method: Composition-based stats.
Identities = 64/230 (27%), Positives = 105/230 (45%), Gaps = 20/230 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + + K+ + V+L+ VSK + I A G F ENK+QE
Sbjct: 1 MEIEDNINSIKKSL----------PKDVTLIGVSKTKPVEYIEEAYEAGLRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K +++ D++ IG LQ NKV IV +I ++ + + + KQ++
Sbjct: 51 LIDKIEYFKEKKDIRWHLIGHLQRNKVKYIVGKVYLIHSLDSIRLLEEIEDKYKKQNKIA 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK--PHFYLLS 178
V IQ+N G E K GI + + + + +GLM I P + + +F +
Sbjct: 111 NVLIQINIGKEESKYGIYKEDLGNMIDAIEKCENVKAKGLMTIIPKGSDEECAKYFRQMK 170
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
EI + ++ LSMGMT D+ +AI G+ +R+G GIFG+R
Sbjct: 171 EIFSALQNKSFKNIEVNYLSMGMTGDYPIAIKEGSNMIRVGQGIFGKRNY 220
>gi|315225144|ref|ZP_07866961.1| YggS family pyridoxal phosphate enzyme [Capnocytophaga ochracea
F0287]
gi|314944827|gb|EFS96859.1| YggS family pyridoxal phosphate enzyme [Capnocytophaga ochracea
F0287]
Length = 241
Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats.
Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 13/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + + +Q+I N+ R + V L+ +K V ++I+VAL+ G + AENK+QE
Sbjct: 3 NILQNIALVQQRIANTCERVGRKPEEVKLLLATKTVTPERIKVALNAGYTLIAENKVQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFL 120
K+K+ L+ FIG LQ+NK+ +I+ +E+V R A L + + + L
Sbjct: 63 KEKYEALKDTPHTN-HFIGHLQTNKIKDILRYEVSCVESVDRLDLAQKLHNRLESEGKEL 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
++IQVNT E K G P++ + V L+++GLM I + F LL
Sbjct: 122 DIFIQVNTSNEENKFGADPSEVLNLVKQVATLPTLHIKGLMTIGLFSAETEKVRACFKLL 181
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +E +LSMGM+ D E AI GAT VR+G+ IFG+R
Sbjct: 182 KHLQQEIIALNLPNVDPRELSMGMSGDLETAIEEGATIVRVGTAIFGKR 230
>gi|84687982|ref|ZP_01015846.1| alanine racemase domain protein [Maritimibacter alkaliphilus
HTCC2654]
gi|84664014|gb|EAQ10514.1| alanine racemase domain protein [Rhodobacterales bacterium
HTCC2654]
Length = 217
Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats.
Identities = 94/214 (43%), Positives = 123/214 (57%), Gaps = 2/214 (0%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L QKI + R S L+AVSK+ +I L G +F ENK+QEA KW
Sbjct: 2 ALSDILQKIRDEEARVGREAGSTRLIAVSKVQPLDRIVSVLDEGHRLFGENKVQEAAGKW 61
Query: 66 IPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
LR ++ ++L IG LQ+NK + + LFD IETV R K A ++ + +++
Sbjct: 62 PDLRARYESIELHLIGPLQTNKARQAMELFDAIETVDRPKLAKTIARLAEELGHCPKLFV 121
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVNTG E QK+G+MP F+ CR L + GLMCIPP P HF LL++IA
Sbjct: 122 QVNTGEEEQKAGVMPGDADAFIADCRDL-GLTIAGLMCIPPVDEEPSLHFALLAKIAARN 180
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +LSMGM+ DFE A+A GAT VR+GS IFGER
Sbjct: 181 GLDELSMGMSGDFEKAVAQGATYVRVGSAIFGER 214
>gi|255527755|ref|ZP_05394608.1| alanine racemase domain protein [Clostridium carboxidivorans P7]
gi|296186667|ref|ZP_06855069.1| pyridoxal phosphate enzyme, YggS family [Clostridium
carboxidivorans P7]
gi|296187056|ref|ZP_06855455.1| pyridoxal phosphate enzyme, YggS family [Clostridium
carboxidivorans P7]
gi|255508542|gb|EET84929.1| alanine racemase domain protein [Clostridium carboxidivorans P7]
gi|296048343|gb|EFG87778.1| pyridoxal phosphate enzyme, YggS family [Clostridium
carboxidivorans P7]
gi|296048704|gb|EFG88136.1| pyridoxal phosphate enzyme, YggS family [Clostridium
carboxidivorans P7]
Length = 220
Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats.
Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 22/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +++ + IE V+L+AVSK ++I+ G F ENK+QE
Sbjct: 1 MSIEENVKMIRNTIEK----------DVTLIAVSKTKPVEEIKKVYDIGIRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D++ IG LQ NKV IV +I+++ + + +
Sbjct: 51 LIDKYDKLPK--DIKWHLIGHLQRNKVKYIVGKVHLIQSLDSIRLLQEIDKHYSANNEIA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLS 178
IQ+N G E K+G++ + + + C + V+GLM I P + +F +
Sbjct: 109 NTLIQINIGREESKTGVLLEKLDELLQQCENCNNVKVKGLMAIVPQATEESCRCYFKKMK 168
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+I + K + LSMGM+ D+ +A+ G+ +R+G GIFG+R
Sbjct: 169 DIFEDLKKKSFKNIQMDILSMGMSGDYSMALQEGSNMIRVGQGIFGKRNYNN 220
>gi|325129170|gb|EGC52016.1| hypothetical protein TIGR00044 [Neisseria meningitidis N1568]
Length = 234
Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats.
Identities = 75/227 (33%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYREVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + T+ R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTICRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|224024555|ref|ZP_03642921.1| hypothetical protein BACCOPRO_01281 [Bacteroides coprophilus DSM
18228]
gi|224017777|gb|EEF75789.1| hypothetical protein BACCOPRO_01281 [Bacteroides coprophilus DSM
18228]
Length = 222
Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats.
Identities = 65/232 (28%), Positives = 109/232 (46%), Gaps = 26/232 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MDIQTNIKEILTEL----------PSGVRLVAVSKFHPNECIEAAYQAGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L K D++ FIG LQ+NKV I +I V K ++ + K +R +
Sbjct: 51 LTEKYQTLPK--DIEWHFIGHLQTNKVKYIAPFISMIHAVDSFKLLEEINKQASKVNRII 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
P ++++ E K G ++ + + +++ G+M + + + F
Sbjct: 109 PCLLEIHIAQEESKYGFTFESCREMLQEGAWKNLKNISINGVMGMATNTEDSDEIRKEFK 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL + E K ++SMGM+ D+ LAI +G+T VR+GS IFG+R
Sbjct: 169 LLHDFFTELKQTYFPNEAQFCEISMGMSHDYPLAIEAGSTLVRVGSKIFGDR 220
>gi|311693179|gb|ADP96052.1| alanine racemase domain protein [marine bacterium HP15]
Length = 206
Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats.
Identities = 71/204 (34%), Positives = 104/204 (50%), Gaps = 11/204 (5%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
L+AVSK + +R A + GQ F EN LQEA +K L V FIG +QSNK +
Sbjct: 3 LLAVSKTRPPEDLREAFAAGQRAFGENYLQEALEKMEALADLEGVDWHFIGPIQSNKTRQ 62
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
+ S F + +V R K A LS + L + +QVN E KSG ++ D V
Sbjct: 63 MASAFSWVHSVDRLKIARRLSEQRDPALPPLNICLQVNINEEESKSGCTLDELPDLVAEI 122
Query: 150 RQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK--------LTKLSMGMTRDFE 198
+ +++ GLM IP + F L+ ++ + L LS+GM+ D E
Sbjct: 123 GELPNISLRGLMAIPDPDQPEAGLRASFRKLANTLKQLRSDHPDAGPLDTLSIGMSGDLE 182
Query: 199 LAIASGATSVRIGSGIFGERPCQT 222
+AIA GAT VR+G+ +FG+RP ++
Sbjct: 183 VAIAEGATWVRVGTALFGKRPVKS 206
>gi|194290665|ref|YP_002006572.1| hypothetical protein RALTA_A2580 [Cupriavidus taiwanensis LMG
19424]
gi|193224500|emb|CAQ70511.1| Conserved hypothetical protein, UPF0001 family; putative racemase
[Cupriavidus taiwanensis LMG 19424]
Length = 229
Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats.
Identities = 85/228 (37%), Positives = 109/228 (47%), Gaps = 10/228 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q I +A A R V+L+AVSK V +IR A + GQ+ F EN +Q
Sbjct: 1 MSVIAANLQAVRQGIAAAAQQAGRQPADVALLAVSKTVSPDRIRAAYAAGQLAFGENYVQ 60
Query: 60 EAKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E K L +Q FIG LQSNK + FD + ++ R + A LS +
Sbjct: 61 EGLDKIAALADLRGRLQWHFIGPLQSNKTRPVAEHFDWVHSIERLRIAERLSAQRPAGMT 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVN E KSG+ P + L + GLM IP +P F
Sbjct: 121 PLQVCIQVNISGEASKSGVAPAEVPALAHAVAALPGLRLRGLMAIPEPADDPAAQRRPFA 180
Query: 176 LLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + A L LSMGM+ D E AIA GAT VRIG+ IFG R
Sbjct: 181 AMRAMLQALRADGLDLDTLSMGMSGDMEAAIAEGATLVRIGTAIFGAR 228
>gi|240256085|ref|NP_567760.4| pyridoxal phosphate binding [Arabidopsis thaliana]
gi|14030629|gb|AAK52989.1|AF375405_1 AT4g26860/F10M23_200 [Arabidopsis thaliana]
gi|17978899|gb|AAL47419.1| AT4g26860/F10M23_200 [Arabidopsis thaliana]
gi|21536981|gb|AAM61322.1| putative proline synthetase associated protein [Arabidopsis
thaliana]
gi|332659861|gb|AEE85261.1| putative pyridoxal phosphate-dependent enzyme, YBL036C type
[Arabidopsis thaliana]
Length = 244
Score = 260 bits (666), Expect = 8e-68, Method: Composition-based stats.
Identities = 75/237 (31%), Positives = 112/237 (47%), Gaps = 18/237 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L+ + +A R + V ++ VSK IR G F EN +QE
Sbjct: 9 TVASALRSVILRARKAAEQVGRDPERVRVLPVSKTKPVSLIRQIYDAGHRCFGENYVQEI 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR 118
K L + D++ F+G LQSNK + V ++ V EK A+ L + R
Sbjct: 69 IDKAPQLPE--DIEWHFVGHLQSNKAKTLLTGVPNLAMVHGVDGEKVANHLDRAVSNLGR 126
Query: 119 -FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIP-PAMGNPKPHFY 175
L V +QVNT E+ KSGI P+ + + L GLM I P + +F
Sbjct: 127 HPLKVLVQVNTSGEVSKSGIEPSSVVELARHVKHHCPNLVFSGLMTIGMPDYTSTPENFR 186
Query: 176 LL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGER--PCQT 222
L +++ + + +LSMGM+ DFELAI G+T+VR+GS IFG R P +T
Sbjct: 187 TLSNCRADVCKALGMAEDQFELSMGMSGDFELAIEMGSTNVRVGSTIFGPREYPKKT 243
>gi|187476708|ref|YP_784731.1| hypothetical protein BAV0193 [Bordetella avium 197N]
gi|115421294|emb|CAJ47799.1| conserved hypothetical protein [Bordetella avium 197N]
Length = 232
Score = 260 bits (666), Expect = 9e-68, Method: Composition-based stats.
Identities = 76/228 (33%), Positives = 112/228 (49%), Gaps = 10/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ +L + +I + A RP SV+L+ VSK ++ +R A + G F ENK QE
Sbjct: 4 SMSARLAAIEHRIAQACERAARPAGSVTLLPVSKTFSAEAVREAAALGLRRFGENKTQEI 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K PL + IG LQ+NKV ++ ++++ R + A L + R L
Sbjct: 64 RQKADPLAD-LGLSWVMIGHLQTNKVKDVARDVAEVQSLDRLELADALQRRLETAGRELD 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGN---PKPHFYLL 177
V IQV T E K G+ P + RQ L V+GLM + + + F L
Sbjct: 123 VLIQVKTSPEPSKFGLPPETLPAMLTHLRQACPALRVQGLMTMAINSEDHAAVRACFRRL 182
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ + L +LSMGM+ DFE+AI G+T VRIGS +FG R
Sbjct: 183 RELRDQHASSAVPLARLSMGMSGDFEIAIEEGSTEVRIGSALFGARNY 230
>gi|190574835|ref|YP_001972680.1| putative racemase [Stenotrophomonas maltophilia K279a]
gi|190012757|emb|CAQ46386.1| putative racemase [Stenotrophomonas maltophilia K279a]
Length = 257
Score = 260 bits (666), Expect = 9e-68, Method: Composition-based stats.
Identities = 75/229 (32%), Positives = 113/229 (49%), Gaps = 12/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q+I ++ R SV L+ VSK VD +IR+A++ G ENK+QEA+
Sbjct: 17 IAANLVTVRQRIADACARVGRDPASVRLLPVSKTVDEARIRMAVAAGCHELGENKVQEAQ 76
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + V IG LQ+NK + + + + A L + + R L V
Sbjct: 77 RKAEAMAD-LGVHWSVIGHLQTNKARYVARFASEFQALDSLRVAEALQQRLQLEERTLDV 135
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSE 179
++QVNT E K G+ P+ + FV +L V GLM + P + + F L E
Sbjct: 136 FVQVNTSAEPSKYGLEPDAVEAFVQQLPAFDRLRVRGLMTLAIFTPDVERVRACFVRLRE 195
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + + L++LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 196 LRDQLQRTAPPDLDLSQLSMGMSGDFEVAIEEGATVVRVGQAIFGARAT 244
>gi|305681060|ref|ZP_07403867.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium
matruchotii ATCC 14266]
gi|305659265|gb|EFM48765.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium
matruchotii ATCC 14266]
Length = 246
Score = 260 bits (666), Expect = 9e-68, Method: Composition-based stats.
Identities = 81/228 (35%), Positives = 107/228 (46%), Gaps = 12/228 (5%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
Q ++I N+A A R + L+AVSK +A G + EN+ QE +
Sbjct: 14 RANYQAVTERIANAAHAAGRDPADIRLIAVSKTFPISHALLAAEAGMTVLGENRPQELAE 73
Query: 64 KWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K R DV IG LQ NK EI + + A L + +R L V
Sbjct: 74 KAQAFRIRGVDVTWCAIGHLQRNKAKEIAQFAAEFHALDSLRLAEALQHRLELANRTLDV 133
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSE 179
+IQVNT +E QKSG P++ + +L+V GLM + P +P F L
Sbjct: 134 FIQVNTSHESQKSGFAPDKVAAILPSLATLDRLHVRGLMTMAAFSPEESVVRPSFEQLRT 193
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + LT+LSMGMT DFE AIA GATSVRIG+ IFG RP
Sbjct: 194 LRDRLQPDAPDGMSLTELSMGMTGDFEWAIAEGATSVRIGTAIFGHRP 241
>gi|113869059|ref|YP_727548.1| hypothetical protein H16_A3105 [Ralstonia eutropha H16]
gi|113527835|emb|CAJ94180.1| conserved hypothetical protein [Ralstonia eutropha H16]
Length = 231
Score = 260 bits (666), Expect = 9e-68, Method: Composition-based stats.
Identities = 85/230 (36%), Positives = 109/230 (47%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ Q+I +A A R ++L+AVSK V +IR A + GQV F EN +Q
Sbjct: 1 MSVIAANLQAVHQRIAAAAQQAGRQPADIALLAVSKTVPPDRIRAAYAAGQVAFGENYVQ 60
Query: 60 EAKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E K L +Q FIG LQSNK + FD + V R + A LS +
Sbjct: 61 EGVDKIAALADLRHRLQWHFIGPLQSNKTRLVAEHFDWVHAVDRLRIAERLSAQRPAGMA 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FY 175
L V IQVN E KSG+ P + L + GLM IP +P F
Sbjct: 121 ALQVCIQVNISGEASKSGVAPAEVPGLAHAVAALPGLRLRGLMAIPEPEHDPAAQRRPFA 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + + + L LSMGM+ D E AIA GAT VRIG+ IFG R
Sbjct: 181 AMRAMLQALRTDGLDLDTLSMGMSGDMEAAIAEGATLVRIGTAIFGARQY 230
>gi|60682296|ref|YP_212440.1| putative racemase [Bacteroides fragilis NCTC 9343]
gi|60493730|emb|CAH08519.1| putative racemase [Bacteroides fragilis NCTC 9343]
Length = 222
Score = 260 bits (666), Expect = 9e-68, Method: Composition-based stats.
Identities = 66/232 (28%), Positives = 107/232 (46%), Gaps = 26/232 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L+ ++ V LVAVSK ++ I A GQ IF E+K+QE
Sbjct: 1 MNVTDNLKQVLAEL----------PSGVRLVAVSKFHPNEAIEEAYRAGQRIFGESKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D++ FIG LQ+NK+ + +I + K + ++ + IK + +
Sbjct: 51 MTGKYESLPK--DIEWHFIGHLQTNKIKYMAPYVSMIHGIDSYKLLAEVNKQAIKAEKVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQLNVEGLMCIPPAMG---NPKPHFY 175
+Q++ E K G ++ K+ + + + GLM + + F
Sbjct: 109 RCLLQIHIAQEETKFGFSFDECKEMLNAAEWKALANIQICGLMGMATNTDSKEQIEREFR 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ E K +LSMGM+ D+ LAI G+T VR+GS IFGER
Sbjct: 169 SLNCFFHEVKKQYFANEPTFCELSMGMSHDYHLAIKEGSTLVRVGSKIFGER 220
>gi|74316686|ref|YP_314426.1| hypothetical protein Tbd_0668 [Thiobacillus denitrificans ATCC
25259]
gi|74056181|gb|AAZ96621.1| Protein of unknown function UPF0001 [Thiobacillus denitrificans
ATCC 25259]
Length = 236
Score = 260 bits (666), Expect = 1e-67, Method: Composition-based stats.
Identities = 71/225 (31%), Positives = 99/225 (44%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L ++ +A+ R +V+L+AVSK D +R G F EN LQEA
Sbjct: 4 TIAARLLTLHDRLARAALDCARDPRAVTLLAVSKTYDHNAVRNIARLGHREFGENYLQEA 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D+ FIG +Q NK + F V R A LS + + L
Sbjct: 64 LDKQRALAD-LDLVWHFIGPIQRNKTRRVAENFSWAHCVDRLCIAERLSEQRPADAPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
V ++VN E K G+ + +L + GLM IP + + F +
Sbjct: 123 VCLEVNVSGEPSKGGVPADAAIALAKQVSALPRLRLRGLMAIPAPTRDRACQRAAFARVR 182
Query: 179 EIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K LSMGM+ DFE AIA GAT VRIG+ IFG R
Sbjct: 183 RLFEALKAHGLPVDTLSMGMSGDFEAAIAEGATIVRIGTAIFGPR 227
>gi|332976336|gb|EGK13192.1| cell division protein YlmE [Desmospora sp. 8437]
Length = 235
Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 108/228 (47%), Gaps = 13/228 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L ++ I+ + A R V+++AV+K VD + R L G E++ QEA
Sbjct: 7 IKERLDQVRENIQKACGRAGRNPAEVNVIAVTKYVDVETTRRVLDVGLTDIGESRAQEAV 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KW L + FIG LQ NKV +V F + ++ R A L+ +
Sbjct: 67 PKWEQLGERG--VWHFIGHLQRNKVKAVVGRFTYVHSLDRYSLARELNNRSEALGQPTRC 124
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+IQVN E K G+ P + DF + L + GLM + P +P +P F L
Sbjct: 125 FIQVNVAGEESKRGLKPEEVIDFAREAAELPWLQLAGLMTMAPFTEDPEEVRPVFRQLRG 184
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ +E + L LSMGM+RD+ +A+ GAT VR+GS + G P
Sbjct: 185 LQQEIRKLGDSRLDLPHLSMGMSRDYTVAVEEGATFVRLGSVLVGGPP 232
>gi|300773349|ref|ZP_07083218.1| YggS family pyridoxal phosphate enzyme [Sphingobacterium
spiritivorum ATCC 33861]
gi|300759520|gb|EFK56347.1| YggS family pyridoxal phosphate enzyme [Sphingobacterium
spiritivorum ATCC 33861]
Length = 244
Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats.
Identities = 78/234 (33%), Positives = 126/234 (53%), Gaps = 15/234 (6%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
MS + + + + + +I + A R + V L+ +K V + +I+ AL G + AENK+
Sbjct: 1 MSQEIIDNIALIQARIAQACTAAGRDRSEVKLLLATKTVPADRIKAALQAGHTLIAENKV 60
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQS 117
QE K+K+ L+ V FIG LQ+NKV +++ ++++ R + A L + ++
Sbjct: 61 QEIKEKYEALKDIPHVN-HFIGHLQTNKVKDLLKYDITCVQSLDRAELAQKLHQRLKAEN 119
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHF 174
R + V+IQVNT +E K G+ P++ D V L ++GLM I + F
Sbjct: 120 RTIEVFIQVNTSFEESKFGVSPHKVVDLVKEVALLDTLKIKGLMTIGLLSTESEKVRQCF 179
Query: 175 YLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LL EI ++ ++ +LSMGM+ D E AIA GAT VR+G+ IFG+RP
Sbjct: 180 RLLKEIQQQIIALDIPHVEMRELSMGMSGDLETAIAEGATIVRVGTAIFGQRPT 233
>gi|325143359|gb|EGC65691.1| hypothetical protein TIGR00044 [Neisseria meningitidis 961-5945]
Length = 228
Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A G+ F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVVLAVEVAKLPNIVVRGLMCVAKAGGSEAELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|308388274|gb|ADO30594.1| hypothetical protein NMBB_0057 [Neisseria meningitidis alpha710]
Length = 228
Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 102/227 (44%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|167564005|ref|ZP_02356921.1| hypothetical protein BoklE_15722 [Burkholderia oklahomensis EO147]
Length = 232
Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats.
Identities = 84/231 (36%), Positives = 112/231 (48%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L +IE++A A R +V+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHHRIEDAARAAGREPRAVTLLAVSKTFPADAVRAAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA K L +++ FIG LQSNK I FD + TV R K A LS +
Sbjct: 61 EAIDKIESLADLRAELEWHFIGPLQSNKTRAIAERFDWVHTVDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
L V +QVN E KSG+ P + + L + GLM IP +P +
Sbjct: 121 PLDVCVQVNISGEASKSGVAPAEAAELARAVAALPALRLRGLMAIPEPAHDPDAKRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 181 ALHALFERLRADGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDYS 231
>gi|52785516|ref|YP_091345.1| YlmE [Bacillus licheniformis ATCC 14580]
gi|163119423|ref|YP_078931.2| putative carboxypeptidase YlmE [Bacillus licheniformis ATCC 14580]
gi|319646081|ref|ZP_08000311.1| YlmE protein [Bacillus sp. BT1B_CT2]
gi|52348018|gb|AAU40652.1| YlmE [Bacillus licheniformis ATCC 14580]
gi|145902930|gb|AAU23293.2| putative carboxypeptidase YlmE [Bacillus licheniformis ATCC 14580]
gi|317391831|gb|EFV72628.1| YlmE protein [Bacillus sp. BT1B_CT2]
Length = 231
Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats.
Identities = 66/227 (29%), Positives = 105/227 (46%), Gaps = 15/227 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ +I + I A R D +S++AV+K V ++ + AL G EN+
Sbjct: 1 MDVKSNLRHINDRINEACIKAGRTPDEISVIAVTKYVSPERAQAALDAGIRHLGENRDTG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L+ V FIG+LQ+ KV I+ I ++ R A + K +
Sbjct: 61 LLHKLDVLKDSEPV-WHFIGTLQTRKVKAIIDHVSYIHSLDRLSLADEIQKRAKK---PI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVNT E K G+ + FV + + GLM + P + + F LL
Sbjct: 117 DCFVQVNTSLEPSKHGMAKEEVLPFVKKLSGYENIRIAGLMTMAPFTDDEKAIRSCFRLL 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
E+ E + ++LSMGM+ D+ +A+ GAT VRIGS + G
Sbjct: 177 RELRDEVRGLDQWNAPCSELSMGMSNDYAIAVEEGATFVRIGSSLVG 223
>gi|311109274|ref|YP_003982127.1| alanine racemase [Achromobacter xylosoxidans A8]
gi|310763963|gb|ADP19412.1| alanine racemase, N-terminal domain protein 3 [Achromobacter
xylosoxidans A8]
Length = 239
Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 111/231 (48%), Gaps = 13/231 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L +Q+I ++ A R DSV+L+ VSK IR A++ G + ENK QE
Sbjct: 6 TMAGRLAQIQQRIADACARAGRSPDSVTLLPVSKTFGVDAIREAMALGLTRYGENKTQEI 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K L +Q IG LQ+NK + ++++ R + A L + + R L
Sbjct: 66 RQKAAAL-DGLGLQWVLIGHLQTNKARDAARDAAEVQSLDRVELAEALHRRLANEGRTLD 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
V +QV T E K G+ P F+ L V+GLM + P + F L
Sbjct: 125 VLVQVKTSSEPSKYGMDPADVPAFLRRIATDFPTLRVQGLMTLAVNSPDAAEVRACFRAL 184
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ + L +LSMGM+ DFELAI G+T VRIGS IFG R
Sbjct: 185 RELRDRLRQENPPGVSLDRLSMGMSGDFELAIEEGSTEVRIGSAIFGARSY 235
>gi|254881744|ref|ZP_05254454.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|319643711|ref|ZP_07998327.1| hypothetical protein HMPREF9011_03929 [Bacteroides sp. 3_1_40A]
gi|254834537|gb|EET14846.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|317384653|gb|EFV65616.1| hypothetical protein HMPREF9011_03929 [Bacteroides sp. 3_1_40A]
Length = 222
Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ ++ V LVAVSK ++ + A + GQ IF E+ +QE
Sbjct: 1 MSIQANLKEVLSEL----------PAGVRLVAVSKFHPNEALEEAYAAGQRIFGESHVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L K D++ FIG LQ+NKV + +I + K ++ + K R +
Sbjct: 51 MTQKYETLPK--DIEWHFIGHLQTNKVKYMAPYVAMIHAIDSYKLLVEVNKQASKVHRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNPKP---HFY 175
P +Q++ E K G ++ ++ + + + + G+M + + + + F
Sbjct: 109 PCLLQIHIAQEETKFGFSFDECREMLDTGGWKDLKNVRLSGVMGMATNVDDDEQIKREFC 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ +E K ++SMGM+ D+ LA+ +G+T VR+GS IFGER
Sbjct: 169 SLNTFFKEIKQNYFSDSEHFKEISMGMSHDYPLAVEAGSTLVRVGSKIFGERNY 222
>gi|227536795|ref|ZP_03966844.1| alanine racemase domain protein [Sphingobacterium spiritivorum ATCC
33300]
gi|227243351|gb|EEI93366.1| alanine racemase domain protein [Sphingobacterium spiritivorum ATCC
33300]
Length = 244
Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats.
Identities = 80/234 (34%), Positives = 128/234 (54%), Gaps = 15/234 (6%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
MS + + + + +I + A R + V L+ +K V +++I+VAL GQ + AENK+
Sbjct: 1 MSQEIIENIALIQARIAKACTAAGRDRSEVKLLLATKTVPAERIKVALQAGQTLIAENKV 60
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQS 117
QE K+K+ L+ V FIG LQ+NKV +++ I+++ R + A L + ++
Sbjct: 61 QEIKEKYEALKDIPHVN-HFIGHLQTNKVKDLLKYDITCIQSLDRAELAQKLHQRLKAEN 119
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHF 174
R + V+IQVNT +E K G+ P++ D V L ++GLM I + F
Sbjct: 120 RTIEVFIQVNTSFEESKFGVSPDKVVDLVKEVALLDTLKIKGLMTIGLLSTESEKVRQCF 179
Query: 175 YLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LL +I ++ ++ +LSMGM+ D E AIA GAT VR+G+ IFG+RP
Sbjct: 180 RLLKDIQQQIIALDIPHVEMRELSMGMSGDLETAIAEGATVVRVGTAIFGQRPT 233
>gi|256821443|ref|YP_003145406.1| alanine racemase domain-containing protein [Kangiella koreensis DSM
16069]
gi|256794982|gb|ACV25638.1| alanine racemase domain protein [Kangiella koreensis DSM 16069]
Length = 227
Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats.
Identities = 77/228 (33%), Positives = 113/228 (49%), Gaps = 10/228 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + L + +I + + K +V VAVSK + IR A + G F EN++Q
Sbjct: 1 MSRIASHLADLQLQIVKTCAKRRIFKHNVLFVAVSKRHPADSIREAYAAGHRDFGENQVQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L ++ IG +QS K +I FD +++V R K A L+ +
Sbjct: 61 EALDKISQLSD-LNINWHMIGVIQSRKCKDIAQHFDWVQSVDRLKVAQKLNQHREQDQSP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQVN E QK+G+ + K Q +L + GLM +PP +P+ F
Sbjct: 120 LNVLIQVNLFGESQKAGVNAAECKKLAHEIMQLPRLKLRGLMALPPKQTDPQTQFQQFER 179
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
I A +L LSMGM+ D+E AI +G+T +R+G+ IFGER
Sbjct: 180 IHSVYQELQAEYPQLDTLSMGMSGDYEPAILAGSTMIRLGTAIFGERD 227
>gi|325131170|gb|EGC53889.1| hypothetical protein TIGR00044 [Neisseria meningitidis OX99.30304]
Length = 228
Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats.
Identities = 75/227 (33%), Positives = 102/227 (44%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AV K S +R + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGVREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSEQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|325103660|ref|YP_004273314.1| alanine racemase domain protein [Pedobacter saltans DSM 12145]
gi|324972508|gb|ADY51492.1| alanine racemase domain protein [Pedobacter saltans DSM 12145]
Length = 236
Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats.
Identities = 70/232 (30%), Positives = 108/232 (46%), Gaps = 25/232 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++ K +IE V L+AVSK + I A + GQ IF EN++QE
Sbjct: 1 MSITDNIKRLKNEIETL---------DVKLIAVSKTKPVEDILEAYNAGQRIFGENQVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L K D+Q IG LQ+NKV I +I +V K ++ K +R +
Sbjct: 52 MAEKEASLPK--DIQWHLIGHLQTNKVKYIAPFVSLIHSVDSIKLLKEINKYAEKNNRII 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+Q+ E K G+ ++ + + + + + GLM I N K FY
Sbjct: 110 DCLLQIYIADEDTKFGLGFDEAIELLRSEEFQHMKNVRIVGLMGIASNTENEKQIKEEFY 169
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + K ++SMGM+ D+ +AI G+T VRIG+ IFG+R
Sbjct: 170 ELKTLFEGIKTSFFRKEDSFKEISMGMSSDYNIAIEQGSTMVRIGNDIFGKR 221
>gi|297799306|ref|XP_002867537.1| AT4g26860/F10M23_200 [Arabidopsis lyrata subsp. lyrata]
gi|297313373|gb|EFH43796.1| AT4g26860/F10M23_200 [Arabidopsis lyrata subsp. lyrata]
Length = 244
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 75/233 (32%), Positives = 110/233 (47%), Gaps = 16/233 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L+ + +A R + V ++AVSK IR G F EN +QE
Sbjct: 9 TVATALRSVILRARKAAEQVGRDPERVRVLAVSKTKPVSLIRQIYDAGHRCFGENYVQEI 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR 118
K L + D++ F+G LQSNK + V ++ V EK A+ L + R
Sbjct: 69 IDKAPQLPE--DIEWHFVGHLQSNKAKTLLTGVPNLAMVHGVDGEKVANHLDRAVSTLGR 126
Query: 119 -FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIP-PAMGNPKPHFY 175
L V +QVNT E+ KSGI P+ + +Q L GLM I P + +F
Sbjct: 127 HPLKVLVQVNTSGEVSKSGIEPSSVVELARHVKQHCPNLVFSGLMTIGMPDYTSTPENFR 186
Query: 176 LL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L +++ + + +LSMGM+ DFELAI G+T+VR+GS IFG R
Sbjct: 187 TLSNCRADVCKALGMAEDRFELSMGMSGDFELAIEMGSTNVRVGSTIFGPREY 239
>gi|148270160|ref|YP_001244620.1| alanine racemase domain-containing protein [Thermotoga petrophila
RKU-1]
gi|170288885|ref|YP_001739123.1| alanine racemase domain-containing protein [Thermotoga sp. RQ2]
gi|281412498|ref|YP_003346577.1| alanine racemase domain protein [Thermotoga naphthophila RKU-10]
gi|147735704|gb|ABQ47044.1| alanine racemase domain protein [Thermotoga petrophila RKU-1]
gi|170176388|gb|ACB09440.1| alanine racemase domain protein [Thermotoga sp. RQ2]
gi|281373601|gb|ADA67163.1| alanine racemase domain protein [Thermotoga naphthophila RKU-10]
Length = 229
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 12/226 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L L+ +++N+A+ A R V LV SK +++ + G F EN+ Q+
Sbjct: 1 MGLKENLERVLNRMKNAALRANRDPFEVRLVVASKYASVQQMEELVFLGIREFGENRAQD 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK + + + FIG +Q+NKV IV ++I +V RE+ + K +
Sbjct: 61 LVKKSEYFKGKP-IIWHFIGRIQTNKVKYIVPRCELIHSVWREEELKEIEKRAEKLGKIQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
+ ++VN E K+G++ + ++F+ LC++ + V G M + P NP+ F L
Sbjct: 120 KILLEVNVFKEETKAGLLVEEVEEFLKLCQEFPHVEVLGFMTMAPYAENPEEVRWGFRTL 179
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ E KL +LSMGM+ DFE+AI GAT VRIGS IF
Sbjct: 180 RELRDELASRFNGNVKLKELSMGMSNDFEVAIEEGATMVRIGSAIF 225
>gi|332559311|ref|ZP_08413633.1| Alanine racemase domain protein [Rhodobacter sphaeroides WS8N]
gi|332277023|gb|EGJ22338.1| Alanine racemase domain protein [Rhodobacter sphaeroides WS8N]
Length = 221
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 92/216 (42%), Positives = 127/216 (58%), Gaps = 2/216 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +I + A R SV L+AVSK+ +++ L G IF EN +QEA+ KW
Sbjct: 2 LETIQTRIAAAEAAAGRAPGSVELIAVSKVQPLERVVAVLEAGHRIFGENYVQEAQGKWP 61
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ + + + IG LQ+NK V LF+ I T+ R A L+ ++ +++Q
Sbjct: 62 DLRERFGPLSVHMIGPLQTNKAKVAVGLFEAIHTLDRPSLAEKLARLAQERGACPRLFVQ 121
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P++ FV CR L VEGLMCIPP G+ PHF LL+ IA
Sbjct: 122 VNTGEEPQKAGVLPSEADGFVAACRGMD-LPVEGLMCIPPEGGDSAPHFALLAAIAARNG 180
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L LSMGM+ DF+ AIA+GAT VR+GS IFG R
Sbjct: 181 LRGLSMGMSGDFDAAIAAGATHVRVGSAIFGARDYS 216
>gi|51246632|ref|YP_066516.1| hypothetical protein DP2780 [Desulfotalea psychrophila LSv54]
gi|50877669|emb|CAG37509.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 229
Score = 259 bits (664), Expect = 1e-67, Method: Composition-based stats.
Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 14/228 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + K++I +A A R + + LVAVSK + ++ + A++CGQ F EN +QE +
Sbjct: 2 ICQNIAQVKERIAQAAKKAGRAPEDIQLVAVSKRLPAETVLQAIACGQQQFGENYIQEVQ 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + + + FIG+LQSNK + ++ETV R K A L+ ++ + L +
Sbjct: 62 EKKELIGDK--ARFHFIGNLQSNKAKMAATYCSMVETVDRLKIAKALNKHSLELDKTLDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLSE 179
+QVN G + KSG + + + + L + GLM IPP + +PHF L
Sbjct: 120 LVQVNIGQDQNKSGTDKAEAAELIRQINKLPALRIRGLMTIPPLHKEPEDSRPHFRNLRT 179
Query: 180 IAREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A + +LSMGM+ D+ +AI GAT VR+G+ IFG R
Sbjct: 180 LAEKLVSENILQCDGRVELSMGMSSDYHIAIEEGATIVRVGTAIFGTR 227
>gi|222099903|ref|YP_002534471.1| Alanine racemase domain protein [Thermotoga neapolitana DSM 4359]
gi|221572293|gb|ACM23105.1| Alanine racemase domain protein [Thermotoga neapolitana DSM 4359]
Length = 229
Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats.
Identities = 71/226 (31%), Positives = 115/226 (50%), Gaps = 12/226 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L L+ ++IEN+A+ + R V LV SK + +++ G F EN+ Q+
Sbjct: 1 MGLKENLEKVMERIENAALRSGRDPSEVKLVVASKYANVQEMEELFLLGIREFGENRAQD 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK + + + FIG +Q+NKV IV ++I +V R + + K ++
Sbjct: 61 LIKKSEYFKGKP-IIWHFIGRIQTNKVKYIVPRCELIHSVWRVEELEEIEKRATKINKIQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
+ I+VN E K+G+ ++F+ +C++ + V G M + P + +P+ F L
Sbjct: 120 KILIEVNVFGEESKAGLSVESVEEFLKICQRFDHVEVLGFMTMAPYVEDPEEVRWGFREL 179
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ E KL +LSMGM+ DFE+AI GAT VRIGS IF
Sbjct: 180 RKLRDELSQRFSGNIKLKELSMGMSNDFEVAIEEGATMVRIGSAIF 225
>gi|15675991|ref|NP_273118.1| hypothetical protein NMB0053 [Neisseria meningitidis MC58]
gi|7225273|gb|AAF40522.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|316985989|gb|EFV64927.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
gi|325199282|gb|ADY94737.1| conserved hypothetical protein TIGR00044 [Neisseria meningitidis
H44/76]
Length = 228
Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats.
Identities = 76/227 (33%), Positives = 102/227 (44%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGREPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + TV R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTVCRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNAAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|329960818|ref|ZP_08299124.1| pyridoxal phosphate enzyme, YggS family [Bacteroides fluxus YIT
12057]
gi|328532419|gb|EGF59220.1| pyridoxal phosphate enzyme, YggS family [Bacteroides fluxus YIT
12057]
Length = 221
Score = 259 bits (664), Expect = 2e-67, Method: Composition-based stats.
Identities = 65/232 (28%), Positives = 105/232 (45%), Gaps = 26/232 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ ++ + V LVAVSK ++ I A GQ +F E+K+QE
Sbjct: 2 IAENLKQVLSEL----------PEGVRLVAVSKFHPNEAIEEAYRAGQRVFGESKVQEMT 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L K D++ FIG LQ+NK+ IV +I V K ++ + K R +
Sbjct: 52 AKYESLPK--DIEWHFIGHLQTNKIKYIVPYVALIHGVDSYKLLVEINRQAAKMGRTVNC 109
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
+Q++ E K G + ++ + + + + GLM + N + F L
Sbjct: 110 LLQLHIAREETKFGFSFEECREMLASGEWKDLAHVRICGLMGMATNTDNTEQIKAEFCSL 169
Query: 178 SEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+E K +LSMGM+ D+ AI +G+T +R+GS IFGER
Sbjct: 170 DSFFQEVKSSWFAHEESFRELSMGMSHDYHEAIDAGSTLIRVGSRIFGERNY 221
>gi|260063098|ref|YP_003196178.1| hypothetical protein RB2501_15954 [Robiginitalea biformata
HTCC2501]
gi|88784667|gb|EAR15837.1| hypothetical protein RB2501_15954 [Robiginitalea biformata
HTCC2501]
Length = 219
Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats.
Identities = 64/229 (27%), Positives = 100/229 (43%), Gaps = 22/229 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +L K+ + D V+LVAVSK D I A G +F EN++QE
Sbjct: 3 MEIAKRLAELKESL----------PDGVTLVAVSKTKDDSAIMEAYEAGHRVFGENRVQE 52
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D+Q IG LQ NKV + +I+ V + + + R +
Sbjct: 53 LTAKYERLPK--DIQWHMIGHLQRNKVKYLAPFVSLIQGVDSPRLLREIDKRGRQAGRVI 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+QV+ E K G + ++ + R+ + V G+M + N + F
Sbjct: 111 DCLLQVHIAEEDSKFGFDREELEELLAGGSLREMEHVRVRGMMGMATFTDNTAQVRREFA 170
Query: 176 LLSEIAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L + + + LSMGM+ D+ +A+ G+ VRIGS IFG R
Sbjct: 171 SLKALYDRWLEADPRADILSMGMSGDYRIALEEGSNMVRIGSSIFGARD 219
>gi|149192339|ref|ZP_01870544.1| FkuA [Vibrio shilonii AK1]
gi|148833817|gb|EDL50849.1| FkuA [Vibrio shilonii AK1]
Length = 210
Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats.
Identities = 71/208 (34%), Positives = 103/208 (49%), Gaps = 11/208 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK---EWDVQLRFIGSL 82
V L+AVSK + I A GQ F EN +QE K + + + D++ FIG +
Sbjct: 1 GDVQLLAVSKTKPIEAILDACQAGQRRFGENYVQEGVSKVVHFNEQHGDIDIEWHFIGPI 60
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
QSNK + FD + TV R K A L+ + + + + V IQVNT E KSG+ Q
Sbjct: 61 QSNKTRPVAEHFDWVHTVDRAKIAQRLNDQRPQGMKPIQVLIQVNTSSEASKSGVDSEQV 120
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIA-----RECKLTKLSMGMT 194
+ L L + G+M IP + + + F L+E+ + ++ LSMGM+
Sbjct: 121 LELAQLISSLPNLTLRGVMSIPENVSDYQSQLIAFKALAEVKNLLAEKHPQVDTLSMGMS 180
Query: 195 RDFELAIASGATSVRIGSGIFGERPCQT 222
D E AI +G+T VRIG+ IFG R
Sbjct: 181 GDMEAAIEAGSTVVRIGTAIFGVRDYSN 208
>gi|323142723|ref|ZP_08077440.1| pyridoxal phosphate enzyme, YggS family [Succinatimonas hippei YIT
12066]
gi|322417518|gb|EFY08135.1| pyridoxal phosphate enzyme, YggS family [Succinatimonas hippei YIT
12066]
Length = 241
Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats.
Identities = 75/229 (32%), Positives = 112/229 (48%), Gaps = 10/229 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L+ +I + A+R ++ ++L+ VSK +I A + G+ F E+ + EA
Sbjct: 10 NITSNLKKVHDEINSCLQRAERSQNDLTLLCVSKTKPISQIIEAYNAGERHFGESYISEA 69
Query: 62 KKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K +++ D+ FIG +QSNK I LFD++E+V R K A LS + K
Sbjct: 70 KDKIPQIKEMGYKDIVWHFIGPIQSNKTKHIAELFDIVESVDRLKVAQRLSDQRPKNLPP 129
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYL 176
L V IQVN E QKSG + + QL + GLM + + + F
Sbjct: 130 LKVLIQVNISNEEQKSGCSYADLDVLINEVQNLPQLELCGLMGVAEDTADKEIIDKSFVK 189
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L E K LS+GMT D +LAI G+T +RIG+ IFG R
Sbjct: 190 LHETFNSLKQKLPHFDILSIGMTHDMDLAIKEGSTEIRIGTAIFGARNY 238
>gi|304313337|ref|YP_003812935.1| hypothetical protein HDN1F_37300 [gamma proteobacterium HdN1]
gi|301799070|emb|CBL47313.1| conserved hypothetical protein [gamma proteobacterium HdN1]
Length = 238
Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 102/232 (43%), Gaps = 15/232 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
LG + +I ++A + P L+A SK + +IR G F E+ LQEA
Sbjct: 9 LGERYSALLAQIRSAAQRYQWPA--PLLLAASKTRSASEIRELFEAGCRDFGESYLQEAL 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ + FIG LQSNK I S FD + +V + A LS + L V
Sbjct: 67 PKMEALQDLP-ITWHFIGPLQSNKTRGIASHFDWVHSVDSLRLAERLSEQRPPTLAPLNV 125
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYLLSE 179
+Q+N E KSG+ P L + GLMC+P + L
Sbjct: 126 CLQINLDNEPTKSGVAPEFAPPLANAIAALPHLRLRGLMCVPAPRELFSEQRQSAAALRA 185
Query: 180 IARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + L LS+GM+ D E AIA G+T VR+GS +FG RP +T
Sbjct: 186 LLSHIQAHCPRCHPALDTLSIGMSDDLEAAIAEGSTLVRVGSALFGPRPPKT 237
>gi|85858964|ref|YP_461166.1| alanine racemase domain-containing protein [Syntrophus
aciditrophicus SB]
gi|85722055|gb|ABC76998.1| alanine racemase, N-terminal domain protein [Syntrophus
aciditrophicus SB]
Length = 232
Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats.
Identities = 83/228 (36%), Positives = 119/228 (52%), Gaps = 13/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N + +++I +A A R + L+AV+K V +I AL G + EN +QE
Sbjct: 5 AIRNNIAEIRERIAGAATRAGRQVSEIRLMAVTKKVQESRIGQALEAGIDLCGENYIQEG 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K K + Q IG LQ+NK V LFD++++V R + A L R LP
Sbjct: 65 KTKIEAIGHPP--QWHMIGHLQTNKAKYAVRLFDMVQSVDRLELAIELERRARAAGRVLP 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V I+VN+G E+ KSG+ P + + + + +EGLM +PP NP +P+F L
Sbjct: 123 VLIEVNSGGELTKSGVAPEEAESLIRSIALLENIAIEGLMTMPPWFENPETARPYFAALR 182
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L +LSMGMT D+E+AI GAT VRIG GIFGER
Sbjct: 183 TLRDRIAAERIDRVSLRELSMGMTDDYEVAIEEGATIVRIGRGIFGER 230
>gi|94987085|ref|YP_595018.1| TIM-barrel fold family protein [Lawsonia intracellularis
PHE/MN1-00]
gi|94731334|emb|CAJ54697.1| predicted enzyme with a TIM-barrel fold [Lawsonia intracellularis
PHE/MN1-00]
Length = 233
Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats.
Identities = 77/225 (34%), Positives = 112/225 (49%), Gaps = 10/225 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ +I+ + + + R K SV L+A+SK K I + GQ F EN +QEA
Sbjct: 7 LKERLEFLHDQIQQAVVSSGRDKKSVKLIAISKFHPVKTIVNVFNYGQKAFGENYVQEAI 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ F G LQ+NK+ +V F+ I T+ K A LLS + + +
Sbjct: 67 YKQSELSGLP-IEWHFTGRLQTNKIKNVVGQFEYIHTIDSIKLAKLLSSRLPEDGPSQKI 125
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSE 179
+QVN G E QK+GI + +L + GLMC+PP K +F L E
Sbjct: 126 LLQVNIGDEPQKAGITVAELPFLAETILSLPKLKLCGLMCLPPITHKGKVVSCYFTKLRE 185
Query: 180 IARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + L +LSMGM+ D+ AI GAT +RIG+ IFG R
Sbjct: 186 LRDRLEVLLDITLPELSMGMSNDYIQAIKEGATLIRIGTSIFGHR 230
>gi|206561630|ref|YP_002232395.1| hypothetical protein BCAL3291 [Burkholderia cenocepacia J2315]
gi|198037672|emb|CAR53615.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
Length = 232
Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats.
Identities = 77/231 (33%), Positives = 108/231 (46%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I ++A A R +V+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLDSVHRRIADAARAAGRDPATVALLAVSKTFPADDVRAAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L ++ FIG LQSNK + FD + +V R K A LS +
Sbjct: 61 ESIDKIDALADLRASLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V +QVN E KSG+ P + L + GLM IP +P
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADVAEVARAVAALPSLRLRGLMAIPEPADDPDAQRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D + A+ GAT VR+G+ IFG R
Sbjct: 181 ALRALFDTLRAGGLPLDTLSMGMSADLDAAVLEGATIVRVGTAIFGARDYS 231
>gi|304388854|ref|ZP_07370906.1| YggS family pyridoxal phosphate enzyme [Neisseria meningitidis ATCC
13091]
gi|304337188|gb|EFM03370.1| YggS family pyridoxal phosphate enzyme [Neisseria meningitidis ATCC
13091]
Length = 228
Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 103/227 (45%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + A R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQAGRKPHSVSLIAVGKTFPSDGIREVYASGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + T+ R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTICRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
L V I+VN E K G+ P + + + L V GLMC+ A + K F
Sbjct: 121 LQVCIEVNIAGEAVKHGVAPEEAVALAVEVAKLPNLVVRGLMCVAKANSSETELKTQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AI GAT VRIGS IFG+R
Sbjct: 181 MQKLLADLNTAGVKADVLSMGMSDDMPAAIECGATHVRIGSAIFGKR 227
>gi|332283446|ref|YP_004415357.1| hypothetical protein PT7_0193 [Pusillimonas sp. T7-7]
gi|330427399|gb|AEC18733.1| hypothetical protein PT7_0193 [Pusillimonas sp. T7-7]
Length = 250
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 75/229 (32%), Positives = 115/229 (50%), Gaps = 13/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L + +I +AI A R DSV+L+ VSK IR A+ G F ENK QE
Sbjct: 6 TIAARLSQVQDRIRKTAIQAGRSADSVTLLPVSKTFGEDAIREAVKAGVYRFGENKAQEI 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K+ PL D+ IG LQ+NK ++ + I+++ R A L + ++ R +
Sbjct: 66 RSKFEPLADC-DIDWVMIGHLQTNKAKDVARMASEIQSLDRMDLAIALDRRLQQEGRAID 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
+QV T E K G+ P + F+ R L ++GLM + + + F L
Sbjct: 125 ALVQVKTSSEPSKYGLPPEELPGFLRQVARDIPTLRIKGLMTLAINAADDAAVRACFRTL 184
Query: 178 SEIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + +L +LSMGM+ DFE+AI G+T VRIG+ IFG R
Sbjct: 185 RELRDQMRQEDIAGIELDRLSMGMSGDFEIAIEEGSTEVRIGTAIFGGR 233
>gi|160902802|ref|YP_001568383.1| alanine racemase domain-containing protein [Petrotoga mobilis SJ95]
gi|160360446|gb|ABX32060.1| alanine racemase domain protein [Petrotoga mobilis SJ95]
Length = 231
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 70/224 (31%), Positives = 114/224 (50%), Gaps = 9/224 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +I+ A + R +S+ LVAVSK S I+ G F ENK QE +
Sbjct: 5 LIENYHTLLNEIQKVAEKSGRDLNSIKLVAVSKNFPSDNIKTLYEEGHKDFGENKAQELR 64
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ L K D+ FIG +Q+NK+ IV + + I +V R K + + + ++ V
Sbjct: 65 EKYEDL-KNLDIVWHFIGRIQTNKIKYIVPIAEYIHSVWRMKEIEEIQKKAEEINKTQKV 123
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSE 179
+++N E K+G++P++ + F+ + + GLM + P N + F L E
Sbjct: 124 LLEINISGEQSKAGLIPSEVEAFLQDATSFKNIKIIGLMTMAPYTDNVEVIRNVFRSLRE 183
Query: 180 IA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + +LSMGMT D+++AI GAT +RIG+ IFG R
Sbjct: 184 LRGNLNKKYPSIKELSMGMTNDYKIAIEEGATLLRIGTRIFGNR 227
>gi|93005125|ref|YP_579562.1| hypothetical protein Pcryo_0294 [Psychrobacter cryohalolentis K5]
gi|92392803|gb|ABE74078.1| Protein of unknown function UPF0001 [Psychrobacter cryohalolentis
K5]
Length = 276
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 74/227 (32%), Positives = 108/227 (47%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L Q K ++ + R SV+L+AVSK ++ + GQ F EN LQEA
Sbjct: 51 LTENWQQVKTQVVQACEQTLRAPSSVTLLAVSKTKSAEMVATLARQGQHDFGENYLQEAI 110
Query: 63 KKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K LR+ + +IGS+Q NK +I FD ++T+ R+ A L+ + +
Sbjct: 111 EKIQLLREQVGCKHIVWHYIGSIQRNKTRDIAEHFDWVQTLERDIIAKRLNDQRPAELPP 170
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSG +P Q + + + +L + GLM IP F +
Sbjct: 171 LNVLIQINIDNEDSKSGCLPEQLPELLTAIKNYERLQLRGLMIIPAKANT--DAFKRTKQ 228
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K LSMGM+ D AIASG T VR+G+ IFG R
Sbjct: 229 LFDDIKRTHPELSQWDTLSMGMSDDMTDAIASGTTMVRVGTAIFGAR 275
>gi|255264498|ref|ZP_05343840.1| pyridoxal phosphate enzyme, YggS family [Thalassiobium sp. R2A62]
gi|255106833|gb|EET49507.1| pyridoxal phosphate enzyme, YggS family [Thalassiobium sp. R2A62]
Length = 225
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 95/218 (43%), Positives = 125/218 (57%), Gaps = 3/218 (1%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +IE A R V L+AVSK+ + ++ L G +F EN++QEA KW
Sbjct: 9 LAEIEARIEAEAERVGRDPVGVRLIAVSKVQPNDRVAAVLEQGHRLFGENRVQEAAGKWP 68
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R + D+++ IG LQ+NK + + LFD I T+ R K A ++ + +YIQ
Sbjct: 69 EFRSRFEDIEVDLIGPLQTNKARQAMELFDAIHTIDRSKLAKTIARLAQEIGACPDLYIQ 128
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+GI P FV C L V GLMCIPPA P HF LL+++A +
Sbjct: 129 VNTGREDQKAGIAPEDVDGFVAECVAMD-LPVRGLMCIPPAEEEPSLHFALLAKMAGRNE 187
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER-PCQT 222
LT LSMGM+ DFE AIA GAT VR+GS IFG+R P T
Sbjct: 188 LTGLSMGMSGDFECAIAQGATHVRVGSAIFGDRVPAAT 225
>gi|260655189|ref|ZP_05860677.1| pyridoxal phosphate enzyme, YggS family [Jonquetella anthropi E3_33
E1]
gi|260630111|gb|EEX48305.1| pyridoxal phosphate enzyme, YggS family [Jonquetella anthropi E3_33
E1]
Length = 230
Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats.
Identities = 70/228 (30%), Positives = 103/228 (45%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCG-QVIFAENKLQE 60
+ ++ +I +A + R + V+LVAVSK I A+ G EN++QE
Sbjct: 3 TFEERIGEVLDRISQAAARSGRKRGDVTLVAVSKTKPLDMIIRAVQTGLITDLGENRVQE 62
Query: 61 AKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K V+ IG LQ NK + + LF I++V K A L +
Sbjct: 63 GMEKIPAWPAGLPPVKWHLIGQLQRNKARKALELFHSIQSVDSVKLAQRLQDIAAELGVR 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
PV ++VNT E KSG Q +L+ +GLM + P + + F
Sbjct: 123 RPVLLEVNTSLEESKSGCALADAPIIADALVQCGRLDWQGLMTVGPLTDDKDQIRRSFAA 182
Query: 177 LSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + A + L LSMGM+ D+ELAI G+T VR+G+ IFG R
Sbjct: 183 LRDCAEGLRKRTGLSLPVLSMGMSGDYELAIEEGSTMVRVGTAIFGAR 230
>gi|220903651|ref|YP_002478963.1| alanine racemase domain-containing protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219867950|gb|ACL48285.1| alanine racemase domain protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 237
Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats.
Identities = 81/237 (34%), Positives = 116/237 (48%), Gaps = 15/237 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L ++ ++++ + A RP++ VSLVAVSK+ + + + GQV F EN +QE
Sbjct: 1 MELLDRYHRVLERLDAACAAAGRPREEVSLVAVSKLHPACDVAAVAAAGQVDFGENYVQE 60
Query: 61 AKKKWIPLRKEW-----DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
A +K L V+ +G +QS K ++ F ++ T+ K A +
Sbjct: 61 ALQKREELEAAPAASALHVRWHMVGHVQSRKAGQVAGAFALVHTLDSRKLADAFERRLAD 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN---PK 171
V QVN E QKSGIM L+V+GLMC+PP + +
Sbjct: 121 GEARQAVLFQVNIASEPQKSGIMAADLPALADYVLESCPHLDVQGLMCLPPVFDSGDAAR 180
Query: 172 PHFYLLSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
PHF LL E+ + L LSMGM+ DFE A+ GAT VRIG+ IFG RP +T
Sbjct: 181 PHFALLRELRDGLRARTGLPLPVLSMGMSGDFEAAVTEGATLVRIGTDIFGLRPAKT 237
>gi|152980093|ref|YP_001352031.1| hypothetical protein mma_0341 [Janthinobacterium sp. Marseille]
gi|151280170|gb|ABR88580.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
Length = 234
Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats.
Identities = 85/232 (36%), Positives = 119/232 (51%), Gaps = 12/232 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + LQ +Q+I ++A A+R V L+AVSK ++ + A GQ F EN LQ
Sbjct: 1 MSVIRQNLQAVRQRITDAANSARRDVHGVELLAVSKTFGAEAVIAAAEAGQGAFGENYLQ 60
Query: 60 EAKKKWIPL---RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
EA +K + R + ++ FIG +QSNK I FD + +V REK A LS +
Sbjct: 61 EALEKIAEVKATRPDLQLEWHFIGPIQSNKTRPIAENFDWVHSVDREKIAQRLSEQRPAH 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L + +QVN E KSG++P++ +L + GLM IP A+G+ +
Sbjct: 121 LPPLNICLQVNISGEASKSGVLPSEALAVAQAIAALPRLCLRGLMAIPEAVGDAEQQRAP 180
Query: 177 LSEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ A KL LSMGM+ D + AIA GAT VRIGS IFG R
Sbjct: 181 FRQMHALLEQLRAEGLKLDTLSMGMSGDMDAAIAEGATIVRIGSAIFGTREY 232
>gi|194366159|ref|YP_002028769.1| alanine racemase domain-containing protein [Stenotrophomonas
maltophilia R551-3]
gi|194348963|gb|ACF52086.1| alanine racemase domain protein [Stenotrophomonas maltophilia
R551-3]
Length = 257
Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats.
Identities = 75/229 (32%), Positives = 113/229 (49%), Gaps = 12/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q+I ++ R SV L+ VSK VD +IR+A++ G ENK+QEA+
Sbjct: 17 IAANLVTVRQRIADACARVGRDPASVRLLPVSKTVDDARIRMAVAAGCQELGENKVQEAQ 76
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + V IG LQ+NK + + + + A L + + R L V
Sbjct: 77 RKAETMAD-LGVHWSVIGHLQTNKARYVARFASEFQALDSLRVAEALQQRLQLEDRTLDV 135
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSE 179
++QVNT E K G+ P+ + FV +L V GLM + P + + F L E
Sbjct: 136 FVQVNTSAEPSKYGLEPDAVEAFVQQLPAFDRLRVRGLMTLAMFTPDVERVRACFVRLRE 195
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + + L++LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 196 LRDKLQRTAPPGLDLSQLSMGMSGDFEVAIEEGATVVRVGQAIFGARAT 244
>gi|313157824|gb|EFR57235.1| pyridoxal phosphate enzyme, YggS family [Alistipes sp. HGB5]
Length = 221
Score = 259 bits (662), Expect = 3e-67, Method: Composition-based stats.
Identities = 62/231 (26%), Positives = 103/231 (44%), Gaps = 23/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +L + + + V+LVAVSK + IR A G +F E++ QE
Sbjct: 1 MSIACQLSFVRSTL----------PEDVTLVAVSKTHPVEAIREAYDAGHRVFGESRPQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K+ L + D++ IG LQ+NK+ I +I +V + A + E K R +
Sbjct: 51 LREKYEALPQ--DIEWHMIGHLQTNKIKYIAPFVSLIHSVDSARLAEAIQREAAKCGRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILC--RQKYQLNVEGLMCIPPAMGN---PKPHFY 175
+ ++++ E KSG + +V + + V G+M I + + F
Sbjct: 109 EILLEIHVADEETKSGWEIGELMRYVGTAPFARMPDVCVRGVMGIATNTDDGEVIRRDFT 168
Query: 176 LLSEIAR------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + LSMGM+ D+ A+ G+ VR+GS IFGER
Sbjct: 169 ELKRCFDLLQPYFGARFNVLSMGMSHDYPFAVECGSNMVRVGSLIFGERDY 219
>gi|221640312|ref|YP_002526574.1| Alanine racemase domain-containing protein [Rhodobacter sphaeroides
KD131]
gi|221161093|gb|ACM02073.1| Alanine racemase domain protein [Rhodobacter sphaeroides KD131]
Length = 221
Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats.
Identities = 92/216 (42%), Positives = 124/216 (57%), Gaps = 2/216 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +I + A R SV L+AVSK+ +++ L G IF EN +QEA+ KW
Sbjct: 2 LETIQTRIAAAEAAAGRAPGSVELIAVSKVQPLERVVAVLEAGHRIFGENYVQEAQGKWP 61
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ + + + IG LQ+NK V LF+ I T+ R A L+ ++ +++Q
Sbjct: 62 DLRERFGPLSVHMIGPLQTNKAKVAVGLFEAIHTLDRPSLAEKLARLAQERGACPRLFVQ 121
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P FV CR L VEGLMCIPP + PHF LL+ IA
Sbjct: 122 VNTGEEPQKAGVLPADADGFVAACRGMD-LPVEGLMCIPPEGCDSAPHFALLAAIAARNG 180
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L LSMGM+ DFE AIA+GAT VR+GS IFG R
Sbjct: 181 LQGLSMGMSGDFEAAIAAGATHVRVGSAIFGARDYS 216
>gi|163859053|ref|YP_001633351.1| hypothetical protein Bpet4732 [Bordetella petrii DSM 12804]
gi|163262781|emb|CAP45084.1| conserved hypothetical protein [Bordetella petrii]
Length = 246
Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 113/231 (48%), Gaps = 13/231 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +Q+++ + A R +SV+L+ VSK + +R A + G F ENK QE
Sbjct: 12 SMAARVARVRQRMDAACARAGRAPESVTLLPVSKTFGPEAVREAAALGLRRFGENKTQEI 71
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K PL D+Q IG LQ+NK + ++++ R A L + + R +
Sbjct: 72 RQKAGPLAD-LDIQWVMIGHLQTNKAKDAARHAAEVQSLDRLDLAYALQRRLQAEGRAID 130
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V +QV T E K G+ F+ + L V+GLM + + + F L
Sbjct: 131 VLVQVKTSPEPSKHGLDMQAVSSFLRIVAGDCPALRVQGLMTLAVQSDDTAAVRACFRAL 190
Query: 178 SEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ + +L +LSMGM+ DFE+AI GAT VR+GS IFG R
Sbjct: 191 RELRDRLRDENIPDVRLDRLSMGMSGDFEIAIEEGATEVRVGSAIFGTRTY 241
>gi|167571150|ref|ZP_02364024.1| hypothetical protein BoklC_15012 [Burkholderia oklahomensis C6786]
Length = 232
Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats.
Identities = 83/231 (35%), Positives = 112/231 (48%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L +IE++A A R +V+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHHRIEDAARAAGREPRAVTLLAVSKTFPAGAVRAAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA K L +++ FIG LQSNK + FD + TV R K A LS +
Sbjct: 61 EAIDKIESLADLRAELEWHFIGPLQSNKTRAVAERFDWVHTVDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
L V +QVN E KSG+ P + + L + GLM IP +P +
Sbjct: 121 PLDVCVQVNISGEASKSGVAPAEAAELARAVAALPALRLRGLMAIPEPAHDPDAKRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 181 ALHALFERLRADGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGAREYS 231
>gi|295399727|ref|ZP_06809708.1| alanine racemase domain protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|312111754|ref|YP_003990070.1| alanine racemase domain protein [Geobacillus sp. Y4.1MC1]
gi|294978130|gb|EFG53727.1| alanine racemase domain protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|311216855|gb|ADP75459.1| alanine racemase domain protein [Geobacillus sp. Y4.1MC1]
Length = 225
Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 106/228 (46%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + ++ IE + R + +VAV+K V ++ + AL G EN+
Sbjct: 1 MTVRDNLAIIRENIEAACQRVGRDPADIRIVAVTKYVSVERAKEALEAGITDLGENRDDG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L E FIG+LQS KV I+ D I ++ R A + K+ +
Sbjct: 61 LLQKYEALGNEP--TWHFIGTLQSRKVKHIIDKVDYIHSLDRMSLAKEIEKRATKR---M 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K G+ + F+ R ++ V GLM + P + + F L
Sbjct: 116 KCFVQVNVSGEATKHGLAKEEVIPFIEQLRDFSRIEVIGLMTMAPYTDDESVLRSCFRQL 175
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ + T+LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 KLLQENVQALHIPNAPCTELSMGMSNDYVIAIEEGATFIRLGTSLVGK 223
>gi|126463262|ref|YP_001044376.1| alanine racemase domain-containing protein [Rhodobacter sphaeroides
ATCC 17029]
gi|126104926|gb|ABN77604.1| alanine racemase domain protein [Rhodobacter sphaeroides ATCC
17029]
Length = 221
Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats.
Identities = 91/216 (42%), Positives = 123/216 (56%), Gaps = 2/216 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +I + A SV L+AVSK+ +++ L G IF EN +QEA+ KW
Sbjct: 2 LETIQTRIAAAEAAAGLAPGSVELIAVSKVQPLERVVAVLEAGHRIFGENYVQEAQGKWP 61
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ + + + IG LQ+NK V LF+ I T+ R A L+ ++ +++Q
Sbjct: 62 DLRERFGPLSVHMIGPLQTNKAKVAVGLFEAIHTLDRPSLAEKLARLAQERGACPRLFVQ 121
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P FV CR L VEGLMCIPP + PHF LL+ IA
Sbjct: 122 VNTGEEPQKAGVLPADADGFVAACRGMD-LPVEGLMCIPPEGCDSAPHFALLAAIAARNG 180
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L LSMGM+ DFE AIA+GAT VR+GS IFG R
Sbjct: 181 LRGLSMGMSGDFEAAIAAGATHVRVGSAIFGARDYS 216
>gi|332878865|ref|ZP_08446580.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332683216|gb|EGJ56098.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 242
Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats.
Identities = 76/229 (33%), Positives = 117/229 (51%), Gaps = 13/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +++ KQ+I + R + V L+ +K V ++I++AL G + AENK+QE
Sbjct: 3 NILQNIEIIKQRIAAACTRVGRKPEEVKLLLATKTVTPERIKIALKAGNTLIAENKIQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFL 120
K+K+ L+ FIG LQ+NK+ EI+ +E+V R A L + + + L
Sbjct: 63 KEKYEALKDVPHTN-HFIGHLQTNKIKEILRYEVSCVESVDRIDLAQKLHNRLASEGKEL 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
++IQVNT E K G P + D V Q L+++GLM I + F LL
Sbjct: 122 DIFIQVNTSNEESKFGADPAEVLDLVKQVAQLPTLHIKGLMTIGLFSAETEKVRACFKLL 181
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +E +LSMGM+ D E AI GAT VR+G+ IFG+R
Sbjct: 182 KRLQQEIIALGLPNVDPQELSMGMSGDLETAIEEGATIVRVGTAIFGQR 230
>gi|115378208|ref|ZP_01465380.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
gi|115364796|gb|EAU63859.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
Length = 210
Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats.
Identities = 78/212 (36%), Positives = 109/212 (51%), Gaps = 6/212 (2%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + +L + ++ ++ RP +SV+L+AVSK+ IR A + GQ F EN Q
Sbjct: 1 MSQVAERLADIQARVASACARVGRPVESVTLIAVSKLKPGALIREAYAAGQRDFGENYAQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E + K L ++ IG LQ+NK + + + R + A LS ++
Sbjct: 61 ELRDKATELEDLAGLRWHAIGPLQTNKAKYVARVAQSFHALDRMEVARELSKRRLEA--P 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
LP Y++VN G E KSG+ P FV R L +EGLM +PP +P+ HF
Sbjct: 119 LPCYVEVNLGGEQSKSGLTPEALGAFVDEARVLPGLRLEGLMALPPPTPDPEQARGHFRR 178
Query: 177 LSEIARECKLTKLSMGMTRDFELAIASGATSV 208
L E+ARE L+ LSMG T DFE AI GAT V
Sbjct: 179 LRELAREHGLSGLSMGTTHDFEQAIEEGATLV 210
>gi|30682530|ref|NP_849649.1| alanine racemase family protein [Arabidopsis thaliana]
gi|3157934|gb|AAC17617.1| Similar to hypothetical protein F09E5.8 gb|U37429 from C. elegans.
ESTs gb|T42019 and gb|N97000 come from this gene
[Arabidopsis thaliana]
gi|332190697|gb|AEE28818.1| putative pyridoxal phosphate-dependent enzyme, YBL036C type
[Arabidopsis thaliana]
Length = 255
Score = 258 bits (661), Expect = 3e-67, Method: Composition-based stats.
Identities = 84/230 (36%), Positives = 116/230 (50%), Gaps = 16/230 (6%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ Q++ +A A R D + +VAVSK IR GQ F EN +QE +K
Sbjct: 25 AALRSVFQRVNQAAEKAGRGSDQIRVVAVSKTKPVSLIRQVYDAGQRSFGENYVQEIIEK 84
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FL 120
L + D++ FIG+LQSNKV + V +E+V EK A++L + R L
Sbjct: 85 APQLPE--DIEWHFIGNLQSNKVKPLLSGVPNLVTVESVDDEKIANMLDRVVGNIGRKPL 142
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNPKPH-FYLLS 178
V++QVNT E K G+ P+ ++ L GLM I A P F LL+
Sbjct: 143 KVFVQVNTSGEDSKFGVEPSGCVGLAKHVKEACSNLEFSGLMTIGMADYTSTPENFKLLA 202
Query: 179 ----EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ +E + +LSMGM+ DFELAI G+T+VRIGS IFG R
Sbjct: 203 KCRSEVCKELGIPEEQCELSMGMSGDFELAIELGSTNVRIGSTIFGAREY 252
>gi|302763195|ref|XP_002965019.1| hypothetical protein SELMODRAFT_83798 [Selaginella moellendorffii]
gi|300167252|gb|EFJ33857.1| hypothetical protein SELMODRAFT_83798 [Selaginella moellendorffii]
Length = 244
Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats.
Identities = 79/231 (34%), Positives = 108/231 (46%), Gaps = 18/231 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ +++ +A + R V++VAVSK IR G F EN QE +K
Sbjct: 15 LRSVYERVRVAAERSGRSASQVNVVAVSKTKPVSLIREVYDAGHRHFGENYAQEFIEKAP 74
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFD---VIETVSREKTASLLSLEMIKQSR-FLPV 122
L D++ FIG LQSNK +V+ ++E + K ASLL + R L V
Sbjct: 75 QLPS--DIRWHFIGHLQSNKAKSLVANVPQLYMVEGIDNFKVASLLDRAVSLLQRNPLKV 132
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIP--PAMGNPKPHFYLLSE 179
+QVNT E KSG+ P+ + + L GLM I P+ LL+
Sbjct: 133 LVQVNTSGEESKSGVEPSACVELAKQIKADCPNLEFSGLMTIGMQDYTSTPENFKALLNC 192
Query: 180 IARECKL-------TKLSMGMTRDFELAIASGATSVRIGSGIFGER--PCQ 221
CK +LSMGM+ DFE AI G+T+VRIGS IFG R P +
Sbjct: 193 REDVCKALEIPQSSCELSMGMSGDFEQAIEMGSTNVRIGSTIFGAREYPAK 243
>gi|89895634|ref|YP_519121.1| hypothetical protein DSY2888 [Desulfitobacterium hafniense Y51]
gi|89335082|dbj|BAE84677.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 233
Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats.
Identities = 70/229 (30%), Positives = 118/229 (51%), Gaps = 13/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L +Q+I+ +A+ + R ++ L+AVSK + + ++ A GQ FAEN++QE
Sbjct: 1 MDIYGSLSAVRQRIQQAAVKSGRDPSAIKLLAVSKTMSAGTVQRAYEAGQRSFAENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L + D + IG LQ+NKV + ++I ++ R L + +++
Sbjct: 61 WQDKVTQLPE--DCEWHLIGRLQTNKVKYLDERINLIHSLDRLSLLETLESQGAQRNIIW 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
P +QVN + QK+G++ + +DF+ + V GLM I +P+ F L
Sbjct: 119 PTLVQVNIARDSQKAGLLAEEVEDFLREAAGCQHIQVYGLMTIGALGASPEDTQGFFREL 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + L +LSMGM++DFE AI G+T +R+G IFGER
Sbjct: 179 RLLKERLQQKNLPHVNLKELSMGMSQDFEWAIQEGSTIIRVGRQIFGER 227
>gi|312143931|ref|YP_003995377.1| alanine racemase domain protein [Halanaerobium sp. 'sapolanicus']
gi|311904582|gb|ADQ15023.1| alanine racemase domain protein [Halanaerobium sp. 'sapolanicus']
Length = 234
Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L Q +KI +A + R ++ + L+AVSK S +I+ G F EN++QE
Sbjct: 5 NLRANYQKIDEKIRKAAERSGRKREDIKLLAVSKTQSSAEIKALKELGVCCFGENRVQEL 64
Query: 62 KKKWIPLR-KEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIKQSR 118
++K L+ ++ + F+G LQ NKV + + +IE+V + A ++ K R
Sbjct: 65 EEKDAELKSEDIVIDWHFVGHLQRNKVKYLMRMENCKMIESVDSFRLAKEVNKRARKNDR 124
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+PV IQ+N + K GI +DF + L ++GLM I P + + + +F
Sbjct: 125 IIPVLIQINIAEDDNKYGIKAENAEDFFKKIIKFKNLEIKGLMTILPYLDDEETLRKYFK 184
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + LT+LSMGMT D+++AI GAT VRIG +FGER
Sbjct: 185 ELKNLFDYLSENIKVLTELSMGMTNDYQIAIEEGATIVRIGRALFGEREY 234
>gi|126736208|ref|ZP_01751951.1| hypothetical protein RCCS2_10735 [Roseobacter sp. CCS2]
gi|126714374|gb|EBA11242.1| hypothetical protein RCCS2_10735 [Roseobacter sp. CCS2]
Length = 228
Score = 258 bits (660), Expect = 4e-67, Method: Composition-based stats.
Identities = 92/219 (42%), Positives = 126/219 (57%), Gaps = 6/219 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL ++ +A A R +SL+AVSK+ +++ L G IF ENK+QE
Sbjct: 12 MSLSE----ITARMSKAAEKAGRSMHELSLIAVSKVQPDARVKAVLDEGHRIFGENKVQE 67
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A KW R+ + ++L IG LQ+NK + + L D I TV R K A+ ++
Sbjct: 68 AAGKWPEFREHYTGIKLHLIGPLQTNKTKQAMQLADAIHTVDRPKLANTIARHAQDLGSC 127
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++IQVNTG E QK+G++P + F+ R L ++GLMCIPP P HF LL++
Sbjct: 128 PDLFIQVNTGEEQQKAGVLPAEADAFIAEVRALD-LPLKGLMCIPPVDEEPSLHFALLAK 186
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IA LT LSMGM+ DFE AIA GAT +R+GS IFGER
Sbjct: 187 IAARNDLTDLSMGMSSDFESAIALGATHIRVGSAIFGER 225
>gi|160891909|ref|ZP_02072912.1| hypothetical protein BACUNI_04367 [Bacteroides uniformis ATCC 8492]
gi|156858387|gb|EDO51818.1| hypothetical protein BACUNI_04367 [Bacteroides uniformis ATCC 8492]
Length = 221
Score = 258 bits (660), Expect = 5e-67, Method: Composition-based stats.
Identities = 66/232 (28%), Positives = 107/232 (46%), Gaps = 26/232 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ ++ V LVAVSK ++ I A GQ +F E+K+QE
Sbjct: 2 IAENLKQVLSEL----------PGKVRLVAVSKFHPNEAIEEAYRAGQRVFGESKVQEMT 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L K D++ FIG LQ+NK+ IV +I + K + + + K + +
Sbjct: 52 AKYESLPK--DIEWHFIGHLQTNKIKYIVPYVALIHGIDSYKLLAEVDKQAAKAGKTVNC 109
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
+Q++ E K G ++ ++ + R+ + + GLM + N + F L
Sbjct: 110 LLQLHIAREETKFGFSFDECREMLAAGEWRELKHIRICGLMGMATNTDNDEQIKTEFCSL 169
Query: 178 SEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
S E K +LSMGM+ D+ AIA+G+T +R+GS IFGER
Sbjct: 170 SSFFNEVKAKWFADAESFRELSMGMSHDYHEAIAAGSTLIRVGSKIFGERNY 221
>gi|172037628|ref|YP_001804129.1| hypothetical protein cce_2715 [Cyanothece sp. ATCC 51142]
gi|171699082|gb|ACB52063.1| UPF0001-containing protein [Cyanothece sp. ATCC 51142]
Length = 218
Score = 258 bits (660), Expect = 5e-67, Method: Composition-based stats.
Identities = 64/228 (28%), Positives = 102/228 (44%), Gaps = 19/228 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L +I + LVAV+K I+ A + G FAE+++QE
Sbjct: 1 MTIAENLDKIMGQI----------PSDIRLVAVTKKKSVAAIKEAYNYGIRDFAESRVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K L+ D+ FIG +Q+NK +++ F I +V K A L K
Sbjct: 51 ALEKQEQLQDYQDICWHFIGHIQTNKAKKVLENFHWIHSVDSLKLAEYLDKLAAKTFISP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V +QV + K G + + + ++GLM I P + F
Sbjct: 111 HVCLQVKILPDPNKYGWTVEELWQDLPELESFKHIKIDGLMTILPLGLSQVECLDTFEKT 170
Query: 178 SEIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++A + +L +LSMGM+ D+ LA+ GAT +R+G+ IFGER
Sbjct: 171 KKLATKITEKSSLQLKELSMGMSNDYLLAVEKGATMIRLGTIIFGERD 218
>gi|319901735|ref|YP_004161463.1| alanine racemase domain protein [Bacteroides helcogenes P 36-108]
gi|319416766|gb|ADV43877.1| alanine racemase domain protein [Bacteroides helcogenes P 36-108]
Length = 222
Score = 258 bits (660), Expect = 5e-67, Method: Composition-based stats.
Identities = 67/233 (28%), Positives = 110/233 (47%), Gaps = 26/233 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ ++ + V LVAVSK ++ I A GQ +F E+K+QE
Sbjct: 2 IAKNLKQILSEL----------PEGVQLVAVSKFHPNEAIEEAYRAGQRVFGESKVQEMT 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L K D++ FIG LQSNK+ IV +I + K + ++ + K +R +
Sbjct: 52 AKYESLPK--DIEWHFIGHLQSNKIKYIVPYVALIHGIDSYKLLAEVNKQAAKMNRTVDC 109
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
+Q++ E K G ++ ++ + ++ + + GLM + N + F L
Sbjct: 110 LLQLHIAREETKFGFSFDECREMLSSGGWKKLGNIRICGLMGMATNTDNAEQIKAEFCSL 169
Query: 178 SEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E K +LSMGM+ D+ AIA+G+T +R+GS IFGER Q
Sbjct: 170 ESFFHEVKSTWFPDEGSFRELSMGMSHDYHEAIAAGSTLIRVGSKIFGERNYQ 222
>gi|124002828|ref|ZP_01687680.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
gi|123992056|gb|EAY31443.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
Length = 226
Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats.
Identities = 65/237 (27%), Positives = 103/237 (43%), Gaps = 26/237 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ K+ + LVAVSK ++ I+ G F ENK+QE
Sbjct: 1 MNIAQNIENINTKLT---------PTNTKLVAVSKTKPAEMIQKTYDTGWRRFGENKVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L K D++ IG LQSNKV I +I V K ++ + K R +
Sbjct: 52 MVEKHEILPK--DIEWHLIGHLQSNKVKYIAPFVSLIHGVDSMKLLKEINKQAAKNERVI 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGN---PKPHFY 175
+Q++ E K G+ + K+ + ++V G+M + + + F
Sbjct: 110 QCLLQLHIAEEDTKFGLSFAEAKEILASQELTTLKNVHVVGVMGMATFTDDKTQVRNEFR 169
Query: 176 LLSEIARECK----------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L E K L ++SMGM+ D+E+AI G+T VR+GS IFG R
Sbjct: 170 NLKTFFDEIKTEVGHLTNVDLQEVSMGMSGDYEIAIEEGSTMVRVGSAIFGTRTYNN 226
>gi|302381495|ref|YP_003817318.1| alanine racemase [Brevundimonas subvibrioides ATCC 15264]
gi|302192123|gb|ADK99694.1| alanine racemase domain protein [Brevundimonas subvibrioides ATCC
15264]
Length = 237
Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats.
Identities = 99/219 (45%), Positives = 129/219 (58%), Gaps = 2/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ +L V + +I +A A R SV+L AVSK + I ALS G +F EN++QE
Sbjct: 11 LDFAGRLAVVRSRILGAAKAAGRDPASVTLTAVSKTQPPEAIDAALSAGLRVFGENRVQE 70
Query: 61 AKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A+ +W+ R D++LR IG LQSNK + V+LFDVIET+ REK L+ K R
Sbjct: 71 AQGRWLDRRAGLPDLELRLIGPLQSNKAEDAVALFDVIETLDREKLVGALASAAAKVGRS 130
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ +QVNTG E QK+G+ P + L R L VEGLM IPPA P HF LL+
Sbjct: 131 PRLLVQVNTGEEPQKAGVAPRDADALIALARA-QGLTVEGLMAIPPADEEPILHFALLAR 189
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IA L LSMGM+ D+E AI G+T VR+GS +FGER
Sbjct: 190 IAERNGLGVLSMGMSGDYEAAIRLGSTHVRVGSALFGER 228
>gi|289547896|ref|YP_003472884.1| alanine racemase domain protein [Thermocrinis albus DSM 14484]
gi|289181513|gb|ADC88757.1| alanine racemase domain protein [Thermocrinis albus DSM 14484]
Length = 225
Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats.
Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 10/221 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++ ++I + A R ++ V+L+ SK D+ +I+ A CG IF E+++Q+
Sbjct: 2 ICERIERVLERIHKACQRAGRREEEVTLLVASKYADAHQIKEAFGCGVSIFGESRVQDFL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KK+ L ++ FIG LQSNKV I+ ++I ++ R A + K + V
Sbjct: 62 KKYEQLASLP-IRWHFIGRLQSNKVKYIIEKVELIHSLDRNSLAEEIDARAKKAGKRQDV 120
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
I+VN G E K G+ P + F + V GLMCIPP +P +P+F L E
Sbjct: 121 LIEVNVGEEETKGGVAPQELDRFFQYVLSLEGIRVLGLMCIPPYKEDPDQVRPYFRSLRE 180
Query: 180 IARECK------LTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ + L LSMGM+ DFE+AI GAT VR+GS I
Sbjct: 181 MKERLEREYGVALPHLSMGMSHDFEVAIEEGATIVRLGSII 221
>gi|150007199|ref|YP_001301942.1| hypothetical protein BDI_0544 [Parabacteroides distasonis ATCC
8503]
gi|256840575|ref|ZP_05546083.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|149935623|gb|ABR42320.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
gi|256737847|gb|EEU51173.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 222
Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats.
Identities = 60/234 (25%), Positives = 109/234 (46%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + K + V+LVAVSK + + A + GQ +F E++ QE
Sbjct: 1 MSIAQNIVQLKTSL----------PQGVTLVAVSKFHPVEALWEAYNAGQRVFGESRAQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + D++ FIG LQSNKV +I +I ++ K + ++ + K +R +
Sbjct: 51 LSAKQKVLPE--DIEWHFIGPLQSNKVKDIAPFIHLIHSIDSLKLLAEVNKQAKKHNRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
V ++++ E K G+ P + K+ + + + + GLM + + + F
Sbjct: 109 RVLLEIHVAQEESKHGLSPEECKELLRDESLAEFQHIRICGLMGMATNTDDTGLIREEFR 168
Query: 176 LLSEIA---------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ ++ ++SMGM+ D+ +AI G+T +R+G+ IFGER
Sbjct: 169 KIHDLFIELKETLCKDNVDFKEISMGMSHDYPIAIQEGSTLIRVGTSIFGEREY 222
>gi|77464422|ref|YP_353926.1| hypothetical protein RSP_0844 [Rhodobacter sphaeroides 2.4.1]
gi|77388840|gb|ABA80025.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
Length = 221
Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats.
Identities = 92/216 (42%), Positives = 123/216 (56%), Gaps = 2/216 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +I + A R SV L+AVSK+ +++ L G IF EN +QEA+ KW
Sbjct: 2 LETIQTRIAAAEAAAGRAPGSVELIAVSKVQPLERVVAVLEAGHRIFGENYVQEAQGKWP 61
Query: 67 PLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
LR+ + + + IG LQ+NK V LF+ I T+ R A L+ ++ +++Q
Sbjct: 62 DLRERFGPLSVHMIGPLQTNKAKVAVGLFEAIHTLDRPSLAEKLARLAQERGACPRLFVQ 121
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P FV CR L VEGLMCIPP + PHF LL+ IA
Sbjct: 122 VNTGEEPQKAGVLPADADGFVAACRAMD-LPVEGLMCIPPEGCDSAPHFALLAAIAARNG 180
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L LSMGM+ DFE AIA GAT VR+GS IFG R
Sbjct: 181 LQGLSMGMSGDFEAAIAVGATHVRVGSAIFGARDYS 216
>gi|107021807|ref|YP_620134.1| hypothetical protein Bcen_0247 [Burkholderia cenocepacia AU 1054]
gi|116688754|ref|YP_834377.1| hypothetical protein Bcen2424_0731 [Burkholderia cenocepacia
HI2424]
gi|105891996|gb|ABF75161.1| Protein of unknown function UPF0001 [Burkholderia cenocepacia AU
1054]
gi|116646843|gb|ABK07484.1| Protein of unknown function UPF0001 [Burkholderia cenocepacia
HI2424]
Length = 239
Score = 258 bits (659), Expect = 5e-67, Method: Composition-based stats.
Identities = 77/230 (33%), Positives = 107/230 (46%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I ++A A R +VSL+AVSK + +R A + GQ F EN +Q
Sbjct: 8 MSDLAARLASVHRRIADAARAAGRDPAAVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQ 67
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L ++ FIG LQSNK + FD + +V R K A LS +
Sbjct: 68 ESIDKIDALADLRASLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLSEQRPAHLP 127
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V +QVN E KSG+ P + L + GLM IP +
Sbjct: 128 PLNVCVQVNISGEASKSGVAPADVAEVARAVAALPSLRLRGLMAIPEPADDTDAQRAPHR 187
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + + L LSMGM+ D + A+ GAT VR+G+ IFG R
Sbjct: 188 ALRALFDTLRADGLPLDTLSMGMSADLDAAVLEGATIVRVGTAIFGARDY 237
>gi|67921018|ref|ZP_00514537.1| Protein of unknown function UPF0001 [Crocosphaera watsonii WH 8501]
gi|67857135|gb|EAM52375.1| Protein of unknown function UPF0001 [Crocosphaera watsonii WH 8501]
Length = 218
Score = 258 bits (659), Expect = 6e-67, Method: Composition-based stats.
Identities = 71/227 (31%), Positives = 102/227 (44%), Gaps = 19/227 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L +I SV LVAV+K I+ A G FAE+++QE
Sbjct: 1 MTIAENLDKILSEI----------PSSVRLVAVTKKKPVTAIKEAYHYGIRDFAESRVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L+ D+ FIG +Q+NK +I+ F I +V K A L K S +
Sbjct: 51 AILKQEELQDHKDICWHFIGHIQTNKAKKILENFHWIHSVDSLKLAEHLDKLAAKTSIYP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V +QV + K G + + L +EGLM I P + F
Sbjct: 111 HVCLQVKLLPDPNKYGWEVMEFWQDLPKLEPLKHLKIEGLMTILPLGLSENECLETFEKT 170
Query: 178 SEIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A + +L +LSMGM+ D+ LA+ GAT +R+GS IFG R
Sbjct: 171 KELATKINEKSSLQLKELSMGMSNDYLLAVEKGATMIRLGSIIFGAR 217
>gi|196230130|ref|ZP_03128993.1| alanine racemase domain protein [Chthoniobacter flavus Ellin428]
gi|196225727|gb|EDY20234.1| alanine racemase domain protein [Chthoniobacter flavus Ellin428]
Length = 243
Score = 258 bits (659), Expect = 6e-67, Method: Composition-based stats.
Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 12/227 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L + I +A A R V LVAV+K + AL+ GQ +F E+++QEA
Sbjct: 3 TIADNLAAVRAVISEAAARAGRNPADVELVAVTKTHPPDSVVEALAAGQYVFGESRVQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFL 120
K K + + FIG LQ NK+ + ++L F+++ V +TA + + F
Sbjct: 63 KAKIPLVSGR--ARWHFIGHLQRNKIRQALALGFELLHGVDSLETAREVDRLTSETGVFP 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLL 177
V ++VN E K G P + ++ + +L +EGLM I P + + +F L
Sbjct: 121 RVLLEVNVAGESSKFGFSPAKLREQLEELLSLGRLQIEGLMTIAPFAPEAESSRKYFVAL 180
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + + L +LSMGM+ D+ +A+ GAT VR+G+ IFG R
Sbjct: 181 RELRDQLQTEFRLPLPRLSMGMSGDYAVAVEEGATLVRVGTAIFGTR 227
>gi|83589709|ref|YP_429718.1| hypothetical protein Moth_0858 [Moorella thermoacetica ATCC 39073]
gi|83572623|gb|ABC19175.1| Protein of unknown function UPF0001 [Moorella thermoacetica ATCC
39073]
Length = 236
Score = 258 bits (659), Expect = 6e-67, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 14/232 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + ++I +A + R + ++LVAV+K V ++IR A++CG EN++QE
Sbjct: 3 NVSENITRVLERIAAAARRSGRRPEDITLVAVTKTVPVERIREAVACGLKDLGENRVQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + V IG LQ NKV ++ +I +V + A ++ R +
Sbjct: 63 LSKQPHVE---GVNWHLIGHLQRNKVRQVWDRVCLIHSVDSLELAREINKRATAAGRRVD 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+ ++VN E K G++P+ V L++ GLM + P + +P +P F L+
Sbjct: 120 ILLEVNIAGEESKFGLVPDAVIPLVREIAGWPGLHICGLMTVAPLVADPEEVRPVFLRLA 179
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ RE + + LSMGMT DFE+AI +GA VRIGS IFG R QT
Sbjct: 180 ALRREVEALRLPGVDMAYLSMGMTNDFEVAIEAGANMVRIGSAIFGSRDYQT 231
>gi|88802794|ref|ZP_01118321.1| hypothetical protein PI23P_09390 [Polaribacter irgensii 23-P]
gi|88781652|gb|EAR12830.1| hypothetical protein PI23P_09390 [Polaribacter irgensii 23-P]
Length = 224
Score = 258 bits (659), Expect = 6e-67, Method: Composition-based stats.
Identities = 66/236 (27%), Positives = 106/236 (44%), Gaps = 26/236 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + K+ I ++V LVAVSK ++ A GQ +F ENK+QE
Sbjct: 1 MEIKKNIAEIKKSI----------PENVILVAVSKTKPIADLQEAYDGGQRVFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L K D+Q IG LQSNKV + ++I + + KT ++ + K R +
Sbjct: 51 MAEKFDALPK--DIQWHMIGHLQSNKVKYMAHFVNLIHGIDKLKTLQEINKQAKKHDRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNPK---PHFY 175
+Q E K G+ + + + ++ + + G M + N + F
Sbjct: 109 SCLLQAKIAKEESKFGLSFEEIEHILKSPDFQELENIKIVGFMGMASFSDNQEQLNEEFA 168
Query: 176 LLSEIAR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L C+L LSMGM+ D+ LAI +G+T +R+GS IFG R +
Sbjct: 169 SLKNFFELHKKNTSTNNCQLEILSMGMSGDYPLAIKNGSTMIRLGSSIFGSRNYSS 224
>gi|301311136|ref|ZP_07217064.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 20_3]
gi|300830710|gb|EFK61352.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 20_3]
Length = 222
Score = 257 bits (658), Expect = 6e-67, Method: Composition-based stats.
Identities = 60/234 (25%), Positives = 108/234 (46%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + K + V+LVAVSK + + A + GQ +F E++ QE
Sbjct: 1 MSIAQNIVQLKTSL----------PQGVTLVAVSKFHPVEALWEAYNAGQRVFGESRAQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + D++ FIG LQSNKV +I +I ++ K + ++ + K R +
Sbjct: 51 LSAKQKVLPE--DIEWHFIGPLQSNKVKDIAPFIHLIHSIDSLKLLAEVNKQAKKHDRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
V ++++ E K G+ P + K+ + + + + GLM + + + F
Sbjct: 109 RVLLEIHVAQEESKHGLSPEECKELLRDESLAEFQHIRICGLMGMATNTDDTGLIREEFR 168
Query: 176 LLSEIA---------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ ++ ++SMGM+ D+ +AI G+T +R+G+ IFGER
Sbjct: 169 KIHDLFIELKETLCKDNVDFKEISMGMSHDYPIAIQEGSTLIRVGTSIFGERKY 222
>gi|330995376|ref|ZP_08319286.1| pyridoxal phosphate enzyme, YggS family [Paraprevotella xylaniphila
YIT 11841]
gi|329575871|gb|EGG57395.1| pyridoxal phosphate enzyme, YggS family [Paraprevotella xylaniphila
YIT 11841]
Length = 223
Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats.
Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 19/224 (8%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
+ +I+ V LVAVSK I A + GQ +F E+ +QE ++K+ L
Sbjct: 3 QIQDEIKRITAS---LPFGVQLVAVSKYHPESCIEEAYAAGQRVFGESHVQELRRKYDNL 59
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
K D++ FIG LQ+NKV I +I V K + + K R +P +Q++
Sbjct: 60 PK--DIEWHFIGHLQTNKVKYIAPYVAMIHAVDSMKLLLEVDKQGEKSGRVIPCLLQLHV 117
Query: 129 GYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIARE 183
E K G P++ + + ++ + + GLMC+ + + F+L E+ +E
Sbjct: 118 AKEETKFGFTPDECRTLIADEEWKKLAHVQICGLMCMASNTDDMEQVRSEFHLAYELFKE 177
Query: 184 CK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K + S GM+ D+ +AI G+T +R+GS IFGER
Sbjct: 178 LKTGAFANAPYFKECSWGMSHDYPIAIEEGSTLIRVGSKIFGER 221
>gi|126654877|ref|ZP_01726411.1| hypothetical protein CY0110_10587 [Cyanothece sp. CCY0110]
gi|126623612|gb|EAZ94316.1| hypothetical protein CY0110_10587 [Cyanothece sp. CCY0110]
Length = 218
Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats.
Identities = 68/227 (29%), Positives = 104/227 (45%), Gaps = 19/227 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L +I SV LVAV+K I A + G FAE+++QE
Sbjct: 1 MNISENLDKILGQI----------PSSVRLVAVTKKKSVAAIEEAYNYGIRDFAESRVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K L+ D+ FIG +Q+NK +++ F I +V K A L K S
Sbjct: 51 ALEKQEQLQNYQDICWHFIGHIQTNKAKQVLKNFHWIHSVDSLKLAKYLDKLADKNSISP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V +QV ++ K G + + + ++GLM I P + F
Sbjct: 111 HVCLQVKILHDPNKYGWKVEEIWQDLSKLESLKYIKIDGLMTILPLGLSQNECLDTFAKT 170
Query: 178 SEIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A + +L +LSMGM+ D+ LA+ GAT +R+G+ IFGER
Sbjct: 171 KELASKITEKSSLQLKELSMGMSNDYLLAVEKGATMIRLGTIIFGER 217
>gi|307244143|ref|ZP_07526261.1| pyridoxal phosphate enzyme, YggS family [Peptostreptococcus
stomatis DSM 17678]
gi|306492514|gb|EFM64549.1| pyridoxal phosphate enzyme, YggS family [Peptostreptococcus
stomatis DSM 17678]
Length = 233
Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats.
Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 15/233 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + ++ K I +++ R + V L+ V+K VD I AL G ENK Q
Sbjct: 1 MSDISVRIDQVKSNIRDASNKVNRNPEEVLLLGVTKTVDVDVIEEALEYGITDVGENKPQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E ++K+ + + IG+LQ+NKV I+ D+I ++ R A ++ R
Sbjct: 61 ELQRKYGLIGNR--AKWHQIGTLQTNKVKYIIDKVDLIHSLDRMGLAEEINKRADSIGRD 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAMGNP---KPHFY 175
+ +QVN E K GI + F+ C K ++ + GLM + P + + F
Sbjct: 119 IRCLVQVNVSKEETKHGIYVEDLETFIRECADKFKRIKIVGLMTMAPDSDDEDEVRAIFR 178
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L E+ K + +LSMGM+ D+++AI G+T +R+G+ IFG+R
Sbjct: 179 KLKEVFENIKNMSIEGVEMKELSMGMSGDYQIAIEEGSTIIRVGTSIFGKRNY 231
>gi|332702329|ref|ZP_08422417.1| protein of unknown function UPF0001 [Desulfovibrio africanus str.
Walvis Bay]
gi|332552478|gb|EGJ49522.1| protein of unknown function UPF0001 [Desulfovibrio africanus str.
Walvis Bay]
Length = 238
Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 110/229 (48%), Gaps = 10/229 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ L L+ ++ +A R V+LVAVSK ++ +R GQ+ F E+ +QE
Sbjct: 11 LELRRNLEAVLAEVNEAAAACGRKSGEVTLVAVSKFHPAQDVRALAGFGQMDFGESYVQE 70
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L+ D++ FIG LQ+NK + F ++ +V K A L
Sbjct: 71 ALVKREELQD-LDLRWHFIGRLQTNKARHVAGSFSLVHSVDSLKLAQTLHKRAQALQTLQ 129
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V +QVN E QK+G ++ + R L + GLM +PP + P +P F L
Sbjct: 130 EVLLQVNLAGEGQKAGAAADEARRLAQEVRGLDSLALRGLMLLPPMVDEPEQARPWFAAL 189
Query: 178 SEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ +L LSMGMT DF AIA GAT VRIG+ IFGER
Sbjct: 190 RELRDSLERELGVRLPHLSMGMTGDFRQAIAEGATIVRIGTRIFGERAY 238
>gi|220927870|ref|YP_002504779.1| alanine racemase domain protein [Clostridium cellulolyticum H10]
gi|219998198|gb|ACL74799.1| alanine racemase domain protein [Clostridium cellulolyticum H10]
Length = 225
Score = 257 bits (658), Expect = 7e-67, Method: Composition-based stats.
Identities = 98/220 (44%), Positives = 141/220 (64%), Gaps = 1/220 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ N+ ++ Q IE SA KR +++L+AVSK + KI L G F E+++QEA
Sbjct: 5 SILNQYKLIVQNIEKSAEKVKRDAKNINLLAVSKFHEVNKIIPLLEIGHCHFGESRVQEA 64
Query: 62 KKKWIPLRKEWDVQ-LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K KWI L+K + L IG LQ+NKV + + LFD+IET+ REK A ++ E+ K +
Sbjct: 65 KSKWIDLKKLYPQTILHLIGPLQTNKVKDAIQLFDIIETLDREKLAEKIADELRKTGKNP 124
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++IQVN G E+QKSGI P + K F+ CR Y L+++GLMCIPPA + +F L +
Sbjct: 125 KIFIQVNIGMEVQKSGIAPEELKMFLNKCRNDYALDIKGLMCIPPAGEDSVKYFLDLYNL 184
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
A++ L ++SMGM+ D++ AI SGAT VRIGS +FG+R
Sbjct: 185 AQKNGLEEISMGMSDDYQEAILSGATQVRIGSSLFGKRNY 224
>gi|330502471|ref|YP_004379340.1| putative alanine racemase [Pseudomonas mendocina NK-01]
gi|328916757|gb|AEB57588.1| putative alanine racemase [Pseudomonas mendocina NK-01]
Length = 269
Score = 257 bits (658), Expect = 8e-67, Method: Composition-based stats.
Identities = 70/226 (30%), Positives = 101/226 (44%), Gaps = 11/226 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ L +++IE + R +V L+ VSK +R+A + G + ENK+QEA
Sbjct: 27 RHNLAEVQRRIEAACQRVGRDPATVRLLPVSKTKPEASLRLAYAAGCRMLGENKVQEAHG 86
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
KW ++ D+Q IG LQ+NK + + + + A L + + R L V+
Sbjct: 87 KWQSMQDLGDLQWSVIGHLQTNKAKLVARFATEFQALDSLRLAEALDRRLQVEGRALDVF 146
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL------ 177
+QVNT E K G+ P FV L V GLM + +
Sbjct: 147 VQVNTSGEASKYGLAPEDVAAFVQALPAFSALRVRGLMTLALFSCEAERVRQCFVRLREL 206
Query: 178 -----SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E +L LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 207 RDRLRQEAPSGIELEALSMGMSGDFEIAIEEGATVVRVGQAIFGAR 252
>gi|91776460|ref|YP_546216.1| hypothetical protein Mfla_2108 [Methylobacillus flagellatus KT]
gi|91710447|gb|ABE50375.1| Protein of unknown function UPF0001 [Methylobacillus flagellatus
KT]
Length = 241
Score = 257 bits (658), Expect = 8e-67, Method: Composition-based stats.
Identities = 84/225 (37%), Positives = 108/225 (48%), Gaps = 9/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++G + Q K +I +A+ A R DSVSL+AVSK + +R GQ F EN LQEA
Sbjct: 9 TIGKRWQAIKARIRAAALDAGRAPDSVSLLAVSKAHPASAMRELFLAGQRQFGENYLQEA 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L+ ++ FIG +QSNK I F + +V R K A L+ L
Sbjct: 69 LAKQEQLQD-LAIEWHFIGPIQSNKTQPIAQHFHWVHSVDRAKIADRLNAAREPGQTALQ 127
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V IQVN E KSG RQ +L + GLM IP +P + F +
Sbjct: 128 VCIQVNVSGESSKSGTSAADAIALADHIRQLPKLRLRGLMAIPAPTDDPQEQRSQFRAVR 187
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I + L LSMGM+ DF AI GAT VR+GS IFG R
Sbjct: 188 NIYDRLQSAGHDLDTLSMGMSEDFPAAIQEGATIVRVGSAIFGAR 232
>gi|330838695|ref|YP_004413275.1| protein of unknown function UPF0001 [Selenomonas sputigena ATCC
35185]
gi|329746459|gb|AEB99815.1| protein of unknown function UPF0001 [Selenomonas sputigena ATCC
35185]
Length = 230
Score = 257 bits (658), Expect = 8e-67, Method: Composition-based stats.
Identities = 78/233 (33%), Positives = 110/233 (47%), Gaps = 19/233 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKR----PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+ L + IE S AKR K+ V LVAV+K ++R A++ G EN++
Sbjct: 2 IEENLHEVLRSIEES--RAKRTIADAKEPVRLVAVTKNHGVAEMREAIAHGVTDIGENRI 59
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QEA++K+ L + IG LQ NK V LFD+I +V + A L E K +
Sbjct: 60 QEAREKFETLERT--AVWHLIGHLQKNKAKYAVKLFDLIHSVDTLELAEALDKEAGKSGK 117
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFY 175
V +QVN E KSGI + + L + GLMCI P + +P F
Sbjct: 118 RQDVLVQVNLAKEASKSGIYEEDLQPLLEAVDALPHLRLCGLMCIAPNYDEVEETRPLFR 177
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ EI + K + LSMGMT D+ +A+ GA VR+G+ IFG R
Sbjct: 178 RMYEIFQRTKEFPWKTANINYLSMGMTHDYRIAVEEGANIVRVGTAIFGPRQY 230
>gi|241761382|ref|ZP_04759470.1| alanine racemase domain protein [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|260753297|ref|YP_003226190.1| alanine racemase domain protein [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|283856197|ref|YP_161877.2| alanine racemase domain-containing protein [Zymomonas mobilis
subsp. mobilis ZM4]
gi|241374289|gb|EER63786.1| alanine racemase domain protein [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|258552660|gb|ACV75606.1| alanine racemase domain protein [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|283775193|gb|AAV88766.2| alanine racemase domain protein [Zymomonas mobilis subsp. mobilis
ZM4]
Length = 232
Score = 257 bits (658), Expect = 8e-67, Method: Composition-based stats.
Identities = 84/213 (39%), Positives = 120/213 (56%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L V + KIE +A +A R D + L+A+SK+ ++ ++ GQ +F EN++QEA KW
Sbjct: 20 LAVVRAKIEKAAKIAGRNPDDIELIAISKLHPAEAALPLIAEGQRVFGENRVQEALGKWP 79
Query: 67 PL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
PL + D++L +G LQSNK V LFD I +V R L M + +IQ
Sbjct: 80 PLIKAHPDIRLHCVGQLQSNKAKTAVELFDAIHSVDRPSLIEALGRAMESTEKKPECFIQ 139
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VN G E QK G TK + CR L V GLM +PP +P P+F L ++A +
Sbjct: 140 VNIGEEDQKGGCDIADTKAILQQCRDA-GLPVIGLMSVPPLEVDPAPYFALTVKMAHDLA 198
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +S+GM+ D+ELAI GAT +R+G+ +FG R
Sbjct: 199 LPAVSIGMSADYELAITLGATHIRVGTALFGHR 231
>gi|170702350|ref|ZP_02893243.1| alanine racemase domain protein [Burkholderia ambifaria IOP40-10]
gi|170132735|gb|EDT01170.1| alanine racemase domain protein [Burkholderia ambifaria IOP40-10]
Length = 232
Score = 257 bits (658), Expect = 8e-67, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 107/231 (46%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS +L ++I ++A A R +VSL+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDFAARLDSVHRRIADAARAAGRDPATVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L ++ FIG LQSNK + FD + +V R K A L+ +
Sbjct: 61 ESIDKIDALADLRTGLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLAEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V +QVN E KSG+ P + L + GLM IP G+
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADVAEVARAVAALPTLRLRGLMAIPEPAGDTDAQRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+ GAT VR+G+ +FG R
Sbjct: 181 ALRALFDTLRADGLPLDTLSMGMSADLEAAVLEGATIVRVGTALFGARDYS 231
>gi|171319776|ref|ZP_02908862.1| alanine racemase domain protein [Burkholderia ambifaria MEX-5]
gi|171094978|gb|EDT40004.1| alanine racemase domain protein [Burkholderia ambifaria MEX-5]
Length = 232
Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 107/231 (46%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS +L ++I ++A A R +VSL+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDFAARLDSVHRRIADAARAAGRDPATVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L ++ FIG LQSNK + FD + +V R K A L+ +
Sbjct: 61 ESIDKIDALADLRTGLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLAEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V +QVN E KSG+ P + L + GLM IP G+
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADVAEVARAVAALPTLRLRGLMAIPEPAGDTDAQRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+ GAT VR+G+ +FG R
Sbjct: 181 ALRALFDTLRADGLTLDTLSMGMSADLEAAVLEGATIVRVGTALFGARDYS 231
>gi|332878474|ref|ZP_08446195.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332683569|gb|EGJ56445.1| pyridoxal phosphate enzyme, YggS family [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 223
Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats.
Identities = 65/224 (29%), Positives = 104/224 (46%), Gaps = 19/224 (8%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
+ +I+ V LVAVSK I A + GQ +F E+ +QE ++K+ L
Sbjct: 3 QIQDEIKRITAS---LPCGVRLVAVSKYHPESHIEEAYAAGQRVFGESHVQELRRKYDNL 59
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
K D++ FIG LQ+NKV I +I V K + + K R +P +Q++
Sbjct: 60 PK--DIEWHFIGHLQTNKVKYIAPYVAMIHAVDSMKLLLEIDKQGEKSGRVIPCLLQLHV 117
Query: 129 GYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIARE 183
E K G P++ V ++ + + GLMC+ + + F+L + +E
Sbjct: 118 AKEETKFGFTPDECCKLVADGEWKKLAHVRIYGLMCMASNTDDMAQVRSEFHLAYALFKE 177
Query: 184 CK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K + S GM+ D+ +AI G+T +R+GS IFGER
Sbjct: 178 LKTGAFANAPYFKECSWGMSHDYPIAIEEGSTLIRVGSKIFGER 221
>gi|325205158|gb|ADZ00611.1| conserved hypothetical protein TIGR00044 [Neisseria meningitidis
M04-240196]
Length = 234
Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats.
Identities = 75/227 (33%), Positives = 102/227 (44%), Gaps = 9/227 (3%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I + R SVSL+AV K S IR + GQ F EN +Q
Sbjct: 1 MTVLQERYCEVSDRIGKLVLQVGRDPHSVSLIAVGKTFPSDGIREVYAAGQRDFGENYIQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K L D+ IG +QSNK + + T+ R KTA LS +
Sbjct: 61 EWYGKTEELADLTDIVWHVIGDVQSNKTKFVAERAHWVHTICRLKTAVRLSGQRPSSMPP 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L V I+VN E K G+ P + + + + V GLMC+ A + F
Sbjct: 121 LQVCIEVNIAGEAAKHGVAPEEAVVLAVEVAKLPNIVVRGLMCVAKANSSETELKVQFQT 180
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ + K LSMGM+ D AIA GAT VRIGS IFG+R
Sbjct: 181 MRKLLADLNTAGVKADVLSMGMSDDMPAAIACGATHVRIGSAIFGKR 227
>gi|297537837|ref|YP_003673606.1| alanine racemase domain-containing protein [Methylotenera sp. 301]
gi|297257184|gb|ADI29029.1| alanine racemase domain protein [Methylotenera sp. 301]
Length = 240
Score = 257 bits (657), Expect = 9e-67, Method: Composition-based stats.
Identities = 82/231 (35%), Positives = 115/231 (49%), Gaps = 11/231 (4%)
Query: 2 SLGNKLQVFKQKIEN--SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
++GN+LQ I + SA + SV L+AVSK S+ IR A GQ +F EN LQ
Sbjct: 3 TIGNRLQDILAIIHSTISASQYRSASQSVQLLAVSKAQTSQAIREAYLAGQTMFGENYLQ 62
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K + L + ++ FIG +QSNK I F + +V R K A L+
Sbjct: 63 EALDKQVQL-NDLAIEWHFIGPIQSNKTQLIAQNFAWVHSVDRLKIAQRLNDARPANLAP 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
L V IQVNT E KSG+ N+ + + +L + GLM IP + + F
Sbjct: 122 LQVCIQVNTSNEASKSGVSTNELEALATAIVKMPRLKLRGLMAIPEPSKDYNQQRSQFKQ 181
Query: 177 LSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ E +A+ L LS+GM+ D++ AI G+T VRIGS +FG R
Sbjct: 182 VRECYDALLAQGFALDTLSIGMSDDYQAAIEEGSTIVRIGSALFGARTYGN 232
>gi|86133337|ref|ZP_01051919.1| alanine racemase, N-terminal domain [Polaribacter sp. MED152]
gi|85820200|gb|EAQ41347.1| alanine racemase, N-terminal domain [Polaribacter sp. MED152]
Length = 222
Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats.
Identities = 69/232 (29%), Positives = 103/232 (44%), Gaps = 26/232 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ LQ K + ++V+LVAVSK ++ A GQ +F ENK+QE
Sbjct: 2 IEKNLQKIKATL----------PENVTLVAVSKTKPVADLQEAYDAGQRVFGENKIQEMV 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L K D+Q IG LQSNKV + D+I V + KT ++ E K +R +
Sbjct: 52 DKYDVLPK--DIQWHMIGHLQSNKVKYMAHFVDLIHGVDKLKTLKVIDKEAKKHNRTINC 109
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
+Q E K G+ ++ + + +NV G M + + F L
Sbjct: 110 LLQAKIAEEDSKFGLSFSEIETILNSDEFAGLENINVAGFMGMATFTSDENQLNNEFSSL 169
Query: 178 SEIAR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
C L LSMGM+ D+ LAI +G+T +R+G+ IFG R
Sbjct: 170 KTFFDKQKEHLNLPNCNLQILSMGMSGDYALAIKNGSTMIRVGNAIFGSRNY 221
>gi|260887799|ref|ZP_05899062.1| pyridoxal phosphate enzyme, YggS family [Selenomonas sputigena ATCC
35185]
gi|260862475|gb|EEX76975.1| pyridoxal phosphate enzyme, YggS family [Selenomonas sputigena ATCC
35185]
Length = 236
Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats.
Identities = 78/233 (33%), Positives = 110/233 (47%), Gaps = 19/233 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKR----PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+ L + IE S AKR K+ V LVAV+K ++R A++ G EN++
Sbjct: 8 IEENLHEVLRSIEES--RAKRTIADAKEPVRLVAVTKNHGVAEMREAIAHGVTDIGENRI 65
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QEA++K+ L + IG LQ NK V LFD+I +V + A L E K +
Sbjct: 66 QEAREKFETLERT--AVWHLIGHLQKNKAKYAVKLFDLIHSVDTLELAEALDKEAGKSGK 123
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFY 175
V +QVN E KSGI + + L + GLMCI P + +P F
Sbjct: 124 RQDVLVQVNLAKEASKSGIYEEDLQPLLEAVDALPHLRLCGLMCIAPNYDEVEETRPLFR 183
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ EI + K + LSMGMT D+ +A+ GA VR+G+ IFG R
Sbjct: 184 RMYEIFQRTKEFPWKTANINYLSMGMTHDYRIAVEEGANIVRVGTAIFGPRQY 236
>gi|254246274|ref|ZP_04939595.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
gi|124871050|gb|EAY62766.1| conserved hypothetical protein [Burkholderia cenocepacia PC184]
Length = 239
Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats.
Identities = 77/230 (33%), Positives = 107/230 (46%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I ++A A R +VSL+AVSK + +R A + GQ F EN +Q
Sbjct: 8 MSDLAARLASVHRRIADAARAAGRDPATVSLLAVSKTFPADDVRAAHAAGQHAFGENYVQ 67
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L ++ FIG LQSNK + FD + +V R K A LS +
Sbjct: 68 ESIDKIDALADLRASLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLSEQRPAHLP 127
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V +QVN E KSG+ P + L + GLM IP +
Sbjct: 128 PLNVCVQVNISGEASKSGVAPADVAEVARAVAALPSLRLRGLMAIPEPADDTDAQRAPHR 187
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + + L LSMGM+ D + A+ GAT VR+G+ IFG R
Sbjct: 188 ALRALFDTLRADGLPLDTLSMGMSADLDAAVLEGATIVRVGTAIFGARDY 237
>gi|56461074|ref|YP_156355.1| TIM-barrel fold family protein [Idiomarina loihiensis L2TR]
gi|56180084|gb|AAV82806.1| Predicted enzyme with a TIM-barrel fold [Idiomarina loihiensis
L2TR]
Length = 240
Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats.
Identities = 76/229 (33%), Positives = 119/229 (51%), Gaps = 16/229 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPK--DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ N L +Q+++ IL++ SV L+AVSK + I+ A++ GQ+ F EN +QE
Sbjct: 13 ITNNLAEIRQQLQ---ILSEESPHQQSVKLLAVSKKHSLEAIKAAIAAGQMHFGENYVQE 69
Query: 61 AKKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
A K L+++ VQ FIG +QSNK +I FD +++V REK A L+ + S+
Sbjct: 70 AVAKITQLKEQTTDPVQWHFIGPVQSNKTKDIAQHFDWVQSVEREKIARRLNEQRPDDSQ 129
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAMGNPKPHFY 175
L + +QVN + KSG+ P Q + +L + GLM I + F
Sbjct: 130 QLNLLLQVNIDDDDNKSGLAPEQVEALAEYVMNCPKLKLRGLMTILKAGTTEDEREKSFQ 189
Query: 176 LLSEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ ++ ++ LSMGM+ D A+ GA VRIG+ IFGER
Sbjct: 190 QMYKLYQQLQQTYGEQIDTLSMGMSGDMRQAVLEGANMVRIGTAIFGER 238
>gi|256830503|ref|YP_003159231.1| alanine racemase domain-containing protein [Desulfomicrobium
baculatum DSM 4028]
gi|256579679|gb|ACU90815.1| alanine racemase domain protein [Desulfomicrobium baculatum DSM
4028]
Length = 231
Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats.
Identities = 84/226 (37%), Positives = 111/226 (49%), Gaps = 11/226 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +++ +A A R DS L+AVSK+ + IR GQ +F EN +QEA
Sbjct: 5 SITDRWLKVLEQMAAAARRAGRAPDSARLLAVSKLHPAHDIRALFEAGQPMFGENYVQEA 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L +E + IG LQ+NKV +V F +I V K A L +
Sbjct: 65 LGKMAVLPRE--ISWHLIGHLQTNKVKSVVGRFALIHGVDSLKLARSLHCQAEAMDLTQD 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V +QVN E QKSGI L GLM +PP +P +P+F L
Sbjct: 123 VLVQVNLAAEKQKSGIFEADLPPLAEFLAGSSFLRWRGLMLMPPFFDDPDRARPYFARLR 182
Query: 179 EIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A + L +LSMGMT DFE AI GAT VRIG+ IFGER
Sbjct: 183 ELADTLRTGFGLALPELSMGMTGDFEAAIEEGATLVRIGTRIFGER 228
>gi|150016464|ref|YP_001308718.1| alanine racemase domain-containing protein [Clostridium
beijerinckii NCIMB 8052]
gi|149902929|gb|ABR33762.1| alanine racemase domain protein [Clostridium beijerinckii NCIMB
8052]
Length = 226
Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 110/230 (47%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ + KI + V+L+AVSK + + A G F ENK+QE
Sbjct: 1 MGIKQNIEELRSKI----------PEQVTLLAVSKTKPLEALEDAYMAGMRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK + DV+ FIG LQSNKV +V +I ++S + + + K ++
Sbjct: 51 LVKKSENFHE--DVRWHFIGQLQSNKVKYLVDKVHLIHSLSSISLLNEIEKQFSKVNKVA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLS 178
IQ+N G E KSGI+ +F+ + ++V+G+M I P + +F
Sbjct: 109 NTLIQINIGREESKSGILEEDLYEFIEAIEKCKFVSVKGIMAIIPIGDEESNRKYFKKTK 168
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+I E K + LSMGMT DF AI G+ VRIG+GIFGER
Sbjct: 169 KIFDELKEKNYTNISMKILSMGMTHDFMTAIEEGSNLVRIGTGIFGERNY 218
>gi|255015185|ref|ZP_05287311.1| hypothetical protein B2_14854 [Bacteroides sp. 2_1_7]
gi|262381194|ref|ZP_06074332.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. 2_1_33B]
gi|262296371|gb|EEY84301.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. 2_1_33B]
Length = 222
Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats.
Identities = 60/234 (25%), Positives = 108/234 (46%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + K + V+LVAVSK + + A + GQ +F E++ QE
Sbjct: 1 MSIAQNIVQLKTSL----------PQGVTLVAVSKFHPVEALWEAYNAGQRVFGESRAQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + D++ FIG LQSNKV +I +I ++ K + ++ + K R +
Sbjct: 51 LSAKQKVLPE--DIEWHFIGPLQSNKVKDIAPFIHLIHSIDSLKLLAEVNKQAKKYDRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
V ++++ E K G+ P + K+ + + + + GLM + + + F
Sbjct: 109 RVLLEIHVAQEESKHGLSPEECKELLRDESLAEFQHIRICGLMGMATNTDDTGLIREEFR 168
Query: 176 LLSEIA---------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ ++ ++SMGM+ D+ +AI G+T +R+G+ IFGER
Sbjct: 169 KIHDLFIELKETLCKDNVDFKEISMGMSHDYPIAIQEGSTLIRVGTSIFGEREY 222
>gi|312129486|ref|YP_003996826.1| alanine racemase domain protein [Leadbetterella byssophila DSM
17132]
gi|311906032|gb|ADQ16473.1| alanine racemase domain protein [Leadbetterella byssophila DSM
17132]
Length = 238
Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats.
Identities = 75/226 (33%), Positives = 129/226 (57%), Gaps = 10/226 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + LQ+ + +I+ + A R ++ V L+ +K V + +I A+ G + AENK+QE
Sbjct: 3 DILHNLQIIQNRIDLACAKANRSREEVRLLLATKTVTADRILTAMQAGYTLIAENKVQEV 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFL 120
K+K+ L+ + FIG LQ+NK+ +++ I+++ R A L + K+++ +
Sbjct: 63 KEKFDALKDFSHIS-HFIGHLQTNKIKDLLKCNVSCIQSLDRLDLAEKLQSRLEKENKDI 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
V+IQVNT E K GI P+Q +D V + ++N++GLM I + + + LL
Sbjct: 122 DVFIQVNTSEEESKFGIHPDQAEDLVRRVAELDRINIKGLMTIGLFSADLDKVRLCYQLL 181
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +E + L +LSMGM+ D E+AI GAT VR+G+ IFG+R
Sbjct: 182 NRLRKEIQVPGVELKELSMGMSGDLEIAIEEGATIVRVGTAIFGQR 227
>gi|293602361|ref|ZP_06684807.1| YggS family pyridoxal phosphate enzyme [Achromobacter piechaudii
ATCC 43553]
gi|292819123|gb|EFF78158.1| YggS family pyridoxal phosphate enzyme [Achromobacter piechaudii
ATCC 43553]
Length = 239
Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats.
Identities = 73/231 (31%), Positives = 113/231 (48%), Gaps = 13/231 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++ Q+I ++ A R D+V L+ VSK + IR A++ G F ENK QE
Sbjct: 6 TMAGRIARIHQRIADACARAGRSPDNVVLLPVSKTFEVDAIREAMALGMTRFGENKTQEL 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K L + ++ IG LQ+NK + D ++++ R A L ++ + R L
Sbjct: 66 RQKAAALAGQ-GLRWVLIGHLQTNKAKDAARDADEVQSLDRVDLAEALHRRLLNEGRTLD 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V +QV T E K G+ P F+ + L V+GLM + +P + F L
Sbjct: 125 VLVQVKTSTEPSKFGMAPEDVSAFLRRIAAEFPTLRVQGLMTLAVNSPDPDAVRACFRAL 184
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + L +LSMGM+ DFELAI G+T VRIG+ IFG R
Sbjct: 185 RTLRDSLRAENIEGVSLERLSMGMSGDFELAIEEGSTEVRIGTAIFGARTY 235
>gi|154251738|ref|YP_001412562.1| alanine racemase domain-containing protein [Parvibaculum
lavamentivorans DS-1]
gi|154155688|gb|ABS62905.1| alanine racemase domain protein [Parvibaculum lavamentivorans DS-1]
Length = 230
Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats.
Identities = 90/194 (46%), Positives = 121/194 (62%), Gaps = 1/194 (0%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQS 84
+ +SL+AVSK ++ I L GQ F EN++QEA KW LR+ + ++L IG LQS
Sbjct: 36 EEISLIAVSKTFEADAIAPLLDAGQRCFGENRVQEAAGKWPHLRERYSGIELHLIGPLQS 95
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK+++ + LFDV+ T+ R K A L R +++QVNTG E QK+G+ P
Sbjct: 96 NKLNDALDLFDVLHTLDRAKLAEALVKARDAGKRLPRLFLQVNTGEEPQKAGVPPGDVDR 155
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASG 204
F+ CR ++L +EGLMCIPP P HF LL +IAR L+KLSMGM+ DFE AI G
Sbjct: 156 FLERCRNDWKLEIEGLMCIPPVTEEPALHFALLEKIARRNGLSKLSMGMSADFETAIRLG 215
Query: 205 ATSVRIGSGIFGER 218
AT VR+GS +FG R
Sbjct: 216 ATHVRVGSALFGTR 229
>gi|332659862|gb|AEE85262.1| putative pyridoxal phosphate-dependent enzyme, YBL036C type
[Arabidopsis thaliana]
Length = 254
Score = 256 bits (656), Expect = 1e-66, Method: Composition-based stats.
Identities = 74/247 (29%), Positives = 111/247 (44%), Gaps = 28/247 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L+ + +A R + V ++ VSK IR G F EN +QE
Sbjct: 9 TVASALRSVILRARKAAEQVGRDPERVRVLPVSKTKPVSLIRQIYDAGHRCFGENYVQEI 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR 118
K L + D++ F+G LQSNK + V ++ V EK A+ L + R
Sbjct: 69 IDKAPQLPE--DIEWHFVGHLQSNKAKTLLTGVPNLAMVHGVDGEKVANHLDRAVSNLGR 126
Query: 119 -FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIP-PAMGNPKPHFY 175
L V +QVNT E+ KSGI P+ + + L GLM I P + +F
Sbjct: 127 HPLKVLVQVNTSGEVSKSGIEPSSVVELARHVKHHCPNLVFSGLMTIGMPDYTSTPENFR 186
Query: 176 --------------LLSEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+++ + + +LSMGM+ DFELAI G+T+VR+GS IFG
Sbjct: 187 VYSFPHKPGQTLSNCRADVCKALGMAEDQFELSMGMSGDFELAIEMGSTNVRVGSTIFGP 246
Query: 218 R--PCQT 222
R P +T
Sbjct: 247 REYPKKT 253
>gi|91090970|ref|XP_974705.1| PREDICTED: similar to proline synthetase co-transcribed
bacterial-like protein [Tribolium castaneum]
Length = 292
Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats.
Identities = 78/238 (32%), Positives = 119/238 (50%), Gaps = 29/238 (12%)
Query: 7 LQVFKQKIENSAILAKRPKDS-----VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L+ ++IE +++ LVAV+K + I A GQ F EN +QE
Sbjct: 54 LRKVLERIEQASLK---TPQELRCKPPRLVAVTKTKPVELIVQAYEAGQRHFGENYVQEL 110
Query: 62 KKKWIP---LRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMIKQ 116
++K L K +++ FIG LQ+NK+++++ ++ETV +K A+ L+ K
Sbjct: 111 EEKSHHPLILEKCKEIKWHFIGHLQTNKINKVLATPNLYMVETVHSQKLAANLNKSWPKF 170
Query: 117 SR---FLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN--- 169
L V +Q+NT E +KSGI PN+ D + L++EGLM I +
Sbjct: 171 GPLDSKLNVMVQINTSAEEEKSGIEPNEVVDLTKFVLNECPNLHLEGLMTIGKFGYDISN 230
Query: 170 -PKPHFYLLS----EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P P F L + RE L +LSMGM+ +E AI G+T+VR+G+ IFGER
Sbjct: 231 GPNPDFLTLRSCRDRVCRELGLDWKTVELSMGMSDGYEHAIELGSTNVRVGTAIFGER 288
>gi|332531595|ref|ZP_08407492.1| alanine racemase domain protein [Hylemonella gracilis ATCC 19624]
gi|332038958|gb|EGI75387.1| alanine racemase domain protein [Hylemonella gracilis ATCC 19624]
Length = 255
Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats.
Identities = 75/228 (32%), Positives = 110/228 (48%), Gaps = 13/228 (5%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ L+ + +I + A R SV L+AVSK + +R A G F EN +QEA
Sbjct: 12 SSALRAVQARINAACDAAGRDPASVRLLAVSKTFGPEAVRAAHQAGLTAFGENYIQEAVA 71
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K L ++ IG +QSNK + F +TV R K A LS + + L +
Sbjct: 72 KTAALADLP-LEWHCIGPIQSNKTRPVAEHFAWAQTVDRFKIAQRLSEQRPAELPPLQIC 130
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVN K+GI P++ + V+ R+ +L + GLMCIP + + F +
Sbjct: 131 LQVNVDGGPTKAGIAPHELSELVLAVRRLPRLRLRGLMCIPDPQPDAAAMQAVFARARTL 190
Query: 181 ARECKL---------TKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + LSMGM+ D E AIA+G+T VRIGS +FG RP
Sbjct: 191 FDDLRAGWDGPDPLPDTLSMGMSADLEAAIAAGSTLVRIGSALFGARP 238
>gi|332525179|ref|ZP_08401354.1| alanine racemase domain protein [Rubrivivax benzoatilyticus JA2]
gi|332108463|gb|EGJ09687.1| alanine racemase domain protein [Rubrivivax benzoatilyticus JA2]
Length = 230
Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats.
Identities = 79/228 (34%), Positives = 109/228 (47%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+G+ LQ K++I +A A R SV+L+AVSK + +R A GQ F EN +QEA
Sbjct: 3 SIGSNLQEVKRRIAAAANAAGRDAQSVTLLAVSKTFPASAVRAAHGEGQRAFGENYVQEA 62
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L +++ IG LQSNK + FD + +V R K A L+ + L
Sbjct: 63 LAKIAELVDLRPELEWHLIGPLQSNKTRPVAEAFDWVHSVDRLKIAQRLAEQRPAWLPPL 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY--QLNVEGLMCIPPAMGNPKPHFYLLS 178
+ +QVN E KSG P ++ + GLM IP +P L+
Sbjct: 123 QLCLQVNVSGEASKSGCAPEDLPALAHAVAALPAERVRLRGLMAIPEPSEDPAAQRQPLA 182
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ A L LSMGM+ D E A+A GAT VR+G+ IFG R
Sbjct: 183 RLRTMLAALNADGLALDTLSMGMSADLEAAVAEGATLVRVGTAIFGRR 230
>gi|220931765|ref|YP_002508673.1| conserved hypothetical protein TIGR00044 [Halothermothrix orenii H
168]
gi|219993075|gb|ACL69678.1| conserved hypothetical protein TIGR00044 [Halothermothrix orenii H
168]
Length = 230
Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats.
Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 14/227 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L +L+ ++I+++ + R KD V L+ VSK +KI+ G IF E+++QE
Sbjct: 5 DLQTRLEEINKRIDDATRRSGR-KDKVKLLPVSKGQSPEKIKYFQRQGFTIFGESRVQEL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMIKQSRF 119
++K L V+ FIG LQ NKV ++ +I ++ + A + K +R
Sbjct: 64 REKDEKLD---GVEWHFIGHLQRNKVKYLMRMENCTLIHSLDSWRLARTIDKRARKNNRK 120
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+PV +QVN + K GI P++ KDFV + + VEGLM I P NP +P+F
Sbjct: 121 IPVLVQVNVARDPNKFGIEPSEVKDFVYEVSKLENIRVEGLMTIVPYSENPEEARPYFKQ 180
Query: 177 LSEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + + + +LSMGM+ DFE+AI GAT +RIG+ +FGER
Sbjct: 181 MNNLKNMLCDKGFNVKELSMGMSNDFEVAIEEGATIIRIGTKLFGER 227
>gi|326315426|ref|YP_004233098.1| hypothetical protein Acav_0608 [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323372262|gb|ADX44531.1| protein of unknown function UPF0001 [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 240
Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats.
Identities = 77/236 (32%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++GN LQ +I + A R SV L+AVSK + +R A GQ F EN +QE
Sbjct: 3 TIGNNLQGVLDRIAQACAGAGRAPSSVRLLAVSKTFGAPAVREAALAGQRAFGENYIQEG 62
Query: 62 KKKWIPLRKEWD-----VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+K + L ++ IG +QSNK + FD + TV R KTA LS +
Sbjct: 63 VEKIVALGAPESGLAHALEWHCIGPVQSNKTRLVAEHFDWVHTVDRPKTAERLSQQRPDH 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF-- 174
L V IQVN K+G+ P++ + + +L + GLM IP + F
Sbjct: 123 LPALQVCIQVNVDGGATKAGLPPDEVPGLALAVARLPRLRLRGLMAIPEPAPDFAAQFSV 182
Query: 175 -YLLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + LS+GMT D E AI +G+T VR+GSGIFG R
Sbjct: 183 HAQARALFDRLRASGAPGLEDFDTLSLGMTADLEAAIHAGSTMVRVGSGIFGARSY 238
>gi|330946139|gb|EGH47377.1| hypothetical protein PSYPI_35980 [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 210
Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats.
Identities = 72/197 (36%), Positives = 93/197 (47%), Gaps = 6/197 (3%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
SV L+AVSK + +R A + G F EN LQEA K + L + FIG +Q
Sbjct: 3 DPASVGLLAVSKTKPASDLREAYTAGLRDFGENYLQEALGKQLELSDLP-LCWHFIGPIQ 61
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
SNK I FD + +V R K A LS + + L + IQVN E KSG P
Sbjct: 62 SNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEPLNICIQVNVSGEASKSGCTPQDLP 121
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIARECK--LTKLSMGMTRDFE 198
+L + GLM IP +P F + + + L LSMGM+ D E
Sbjct: 122 ALAAAIIALPRLRLRGLMAIPEPTDDPAAQDASFAAVRTLQEQLNLPLDTLSMGMSHDLE 181
Query: 199 LAIASGATSVRIGSGIF 215
AIA GAT VRIG+ +F
Sbjct: 182 AAIAQGATWVRIGTALF 198
>gi|121592853|ref|YP_984749.1| alanine racemase domain-containing protein [Acidovorax sp. JS42]
gi|120604933|gb|ABM40673.1| alanine racemase domain protein [Acidovorax sp. JS42]
Length = 238
Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats.
Identities = 74/232 (31%), Positives = 111/232 (47%), Gaps = 15/232 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + LQ +++I + A RP D+V+L+AVSK + +R A GQ F EN +QEA
Sbjct: 3 TIASNLQNVRERIARACTAAGRPPDAVALLAVSKTFGPEAVRDAALAGQRRFGENYIQEA 62
Query: 62 KKKWI---PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K L ++ IG +QSNK + FD + TV R KTA LS +
Sbjct: 63 VEKMALVAALGLPQPLEWHCIGPVQSNKTRLVAQHFDWVHTVDRPKTAQRLSDQRPDNLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL- 177
L V IQVN K+G+ + +L + G+M IP + + +L
Sbjct: 123 ALQVCIQVNVDGGATKAGVPAEEALALAQAVAALPRLTLRGVMSIPDPVPDEAAQLAVLL 182
Query: 178 --SEIARECKL---------TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + LS+GMT D E A+ +G+T VR+GSGIFG R
Sbjct: 183 RVRQVFDTLRAQGGPGFEAVDTLSLGMTGDLEAAVRAGSTMVRVGSGIFGAR 234
>gi|170732052|ref|YP_001763999.1| alanine racemase domain-containing protein [Burkholderia
cenocepacia MC0-3]
gi|169815294|gb|ACA89877.1| alanine racemase domain protein [Burkholderia cenocepacia MC0-3]
Length = 232
Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats.
Identities = 77/230 (33%), Positives = 107/230 (46%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I ++A A R +VSL+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHRRIADAARAAGRDPATVSLLAVSKTFPADDVRAAHAAGQHAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L ++ FIG LQSNK + FD + +V R K A LS +
Sbjct: 61 ESIDKIDALADLRASLEWHFIGPLQSNKTRPVAERFDWVHSVDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V +QVN E KSG+ P + L + GLM IP +
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADVAEVARAVAALPSLRLRGLMAIPEPADDTDAQRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + + L LSMGM+ D + A+ GAT VR+G+ IFG R
Sbjct: 181 ALRALFDTLRADGLPLDTLSMGMSADLDAAVLEGATIVRVGTAIFGARDY 230
>gi|282855832|ref|ZP_06265134.1| pyridoxal phosphate enzyme, YggS family [Pyramidobacter piscolens
W5455]
gi|282586346|gb|EFB91612.1| pyridoxal phosphate enzyme, YggS family [Pyramidobacter piscolens
W5455]
Length = 231
Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats.
Identities = 72/222 (32%), Positives = 108/222 (48%), Gaps = 10/222 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCG-QVIFAENKLQEAKKKW 65
++ ++E +A + R V+L+AVSK + + A G F EN++QE + K
Sbjct: 10 IRSILDRMEAAARRSGRKAAEVTLLAVSKTKPLETVVAAARTGLVTHFGENRVQEGQAKI 69
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
E IG LQ NK + V LFDVIE++ E A+ + ++ + L V I+
Sbjct: 70 PGFPAELGAVWHLIGHLQRNKARKAVELFDVIESIDGEGIAAAVERVCAEKDKRLDVLIE 129
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIA 181
VN+ E K+G + R Q L ++GLM I P G+ + F E+
Sbjct: 130 VNSSGEASKTGTPAAEVPALADFVRGQCPHLKLQGLMTIGPLGGDERAVRGAFDATRELR 189
Query: 182 RECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+L+ LSMGM+ DFE AI G+T VR+G+ IFG R
Sbjct: 190 DRLRLSADDLPCLSMGMSGDFEWAIEQGSTEVRVGTAIFGHR 231
>gi|254489708|ref|ZP_05102904.1| conserved hypothetical protein TIGR00044 [Methylophaga thiooxidans
DMS010]
gi|224465117|gb|EEF81370.1| conserved hypothetical protein TIGR00044 [Methylophaga thiooxydans
DMS010]
Length = 231
Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats.
Identities = 79/227 (34%), Positives = 116/227 (51%), Gaps = 10/227 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + + I + A R + +V L+AVSK ++K+R + GQ F EN LQ
Sbjct: 1 MTEIKKRFETISSSIRQAESDANRAEKAVQLLAVSKTWPAEKLRTVAALGQTRFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L +++ FIG +QSNK +I + FD +TV R K A L+ + +Q
Sbjct: 61 EALDKIHALAD-LELEWHFIGPIQSNKTRDIATFFDWAQTVDRLKVAKRLNDQRPQQLPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
L V IQVN E KSG+ + + +Q +L + GLM IP N F
Sbjct: 120 LNVCIQVNIDNEDSKSGVSVEEIQPLAEAIQQFDKLKLRGLMIIPARHDNETAQAETFRR 179
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + + + LSMGMT D +LAI G+T VRIG+ +FG+R
Sbjct: 180 AFELYQSLQSQFDGIDTLSMGMTADRQLAIQHGSTMVRIGTALFGQR 226
>gi|121535248|ref|ZP_01667062.1| alanine racemase domain protein [Thermosinus carboxydivorans Nor1]
gi|121306133|gb|EAX47061.1| alanine racemase domain protein [Thermosinus carboxydivorans Nor1]
Length = 240
Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats.
Identities = 80/238 (33%), Positives = 117/238 (49%), Gaps = 21/238 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPK------DSVSLVAVSKMVDSKKIRVALSCGQVIFA 54
MS+ L+ Q I ++ LA+R V+++AV+K D +R A+ G I
Sbjct: 1 MSIAGNLETIAQNIRSA--LARRSTHIAEQLQPVTIIAVTKNQDIAAMREAIDHGVTIVG 58
Query: 55 ENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
EN++QEA K L + V+ IG LQ+NKV + VSLFD+I +V E+ A +
Sbjct: 59 ENRVQEAMTKHKSL--DRTVEWHLIGHLQTNKVRQAVSLFDLIHSVDSERLAREIDRAAA 116
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PK 171
K + + +QVN E K G+ P + L + + GLM I P + +
Sbjct: 117 KIGKRQNILLQVNVAGEETKFGVSPREAIVLARLVAGLEHVRLCGLMTIAPFFDDAEMTR 176
Query: 172 PHFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
P F L +I E K + LSMGMT D+ +A+ GA VRIG+GIFG R +
Sbjct: 177 PVFRELYQIYCELKALNLPGSDIKWLSMGMTNDYTVAVEEGANLVRIGTGIFGPRQYR 234
>gi|224080861|ref|XP_002193974.1| PREDICTED: similar to proline synthetase co-transcribed homolog
(bacterial) [Taeniopygia guttata]
Length = 276
Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats.
Identities = 80/242 (33%), Positives = 114/242 (47%), Gaps = 22/242 (9%)
Query: 3 LGNKLQVFKQKIENSAILA--KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
LG L+ ++++ +A P LVAVSK + + A GQ F EN +QE
Sbjct: 12 LGPALRAVTEQVQQAAARRPQGLPAVQPRLVAVSKTKPVEMVMEAYGHGQRSFGENYVQE 71
Query: 61 AKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIK 115
+K L D++ FIG LQ N V+++ V ++ETV K A ++ K
Sbjct: 72 LLEKASDSRILSSCPDIKWHFIGHLQKNNVNKLIAVPNLFMLETVDSVKLADRVNSSWQK 131
Query: 116 QS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCIPPAMGN--- 169
+ + L V +QVNT E K G+ P T V + L GLM I +
Sbjct: 132 KGSSQKLKVMVQVNTSGEDSKHGLPPGDTAAAVEHVINKCPSLEFVGLMTIGSIGHDLSK 191
Query: 170 -PKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
P P F +L E+ + L +LSMGM+ DF+ AI G+T+VRIGS IFGER
Sbjct: 192 GPNPDFQVLLSVRQEVCEKLNLPLDKVELSMGMSTDFQHAIEVGSTNVRIGSTIFGERDY 251
Query: 221 QT 222
+
Sbjct: 252 SS 253
>gi|187779883|ref|ZP_02996356.1| hypothetical protein CLOSPO_03479 [Clostridium sporogenes ATCC
15579]
gi|187773508|gb|EDU37310.1| hypothetical protein CLOSPO_03479 [Clostridium sporogenes ATCC
15579]
Length = 225
Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats.
Identities = 61/206 (29%), Positives = 98/206 (47%), Gaps = 10/206 (4%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V+L+ VSK + I A G F ENK+QE K +++ D++ IG LQ
Sbjct: 17 PKDVTLIGVSKTKPVEYIEEAYEAGLRDFGENKVQELVDKIEYFKEKKDIRWHLIGHLQR 76
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK+ IV +I ++ + + + KQ++ V IQ+N G E K GI +
Sbjct: 77 NKIKYIVGKVYLIHSLDSIRLLEEIEDKYKKQNKIANVLIQINIGKEESKYGIYKEDLGN 136
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPK--PHFYLLSEI--------ARECKLTKLSMGMT 194
+ + + +GLM I P + + +F + EI + ++ LSMGMT
Sbjct: 137 MLDAIEKCENVKAKGLMAIIPKGSDEECAKYFRQMKEIFSTLQNKSFKNIEVKYLSMGMT 196
Query: 195 RDFELAIASGATSVRIGSGIFGERPC 220
D+ +AI G+ +R+G GIFG+R
Sbjct: 197 GDYPIAIKEGSNMIRVGQGIFGKRNY 222
>gi|319764079|ref|YP_004128016.1| alanine racemase domain protein [Alicycliphilus denitrificans BC]
gi|317118640|gb|ADV01129.1| alanine racemase domain protein [Alicycliphilus denitrificans BC]
Length = 264
Score = 256 bits (655), Expect = 2e-66, Method: Composition-based stats.
Identities = 67/223 (30%), Positives = 100/223 (44%), Gaps = 11/223 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +I + A R SV L+ VSK ++R+A + G + ENK QEA KW+
Sbjct: 25 LATVQARIAAACQRAGRDPASVRLLPVSKTQPEARVRLAHAAGCRLLGENKPQEAYGKWL 84
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ ++ IG LQ+NK + + + + A L + + R L V++QV
Sbjct: 85 ATQDLPGLRWSVIGHLQTNKAKLVARFASEFQALDSLRVAEALERRLQAEGRALDVFVQV 144
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--------- 177
NT E K G++P + F+ L V GLM + +
Sbjct: 145 NTSGEASKYGLLPREVAAFLRALPAFPALRVRGLMTLALFSSDAARVRRCFVLLRTLRDR 204
Query: 178 --SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E L +LSMGM+ DFE+AI GAT VR+G +FG R
Sbjct: 205 LRQEAPAGITLEELSMGMSGDFEIAIEEGATVVRVGQALFGAR 247
>gi|138894666|ref|YP_001125119.1| hypothetical protein GTNG_0996 [Geobacillus thermodenitrificans
NG80-2]
gi|196247719|ref|ZP_03146421.1| alanine racemase domain protein [Geobacillus sp. G11MC16]
gi|134266179|gb|ABO66374.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
gi|196212503|gb|EDY07260.1| alanine racemase domain protein [Geobacillus sp. G11MC16]
Length = 224
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 68/228 (29%), Positives = 112/228 (49%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L +++IE + R V +VAV+K +++ + + L G V EN+ +
Sbjct: 1 MTVRDNLAAIRRQIEGACARVGRDPADVRIVAVTKYINAARAQEVLDAGIVDLGENRSDQ 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + K+ FIG+LQS KV EI+ D I ++ R A + + R +
Sbjct: 61 LLQKYEVIGKQ--ATWHFIGTLQSRKVKEIIDKVDYIHSLDRLSLAKEIEKRAV---RPV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K G+ P++T F+ R + V GLM + P + + F L
Sbjct: 116 KCFVQVNVSGEATKHGLAPDETVPFIEQLRSFPCIEVIGLMTMAPHTEDKSVLRACFRQL 175
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ + T+LSMGM+ D+E+AI GAT VRIGS + G
Sbjct: 176 RMLKERVQALNLPYAPCTELSMGMSNDYEIAIEEGATFVRIGSALVGS 223
>gi|209527933|ref|ZP_03276419.1| alanine racemase domain protein [Arthrospira maxima CS-328]
gi|209491623|gb|EDZ91992.1| alanine racemase domain protein [Arthrospira maxima CS-328]
Length = 223
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 68/228 (29%), Positives = 103/228 (45%), Gaps = 21/228 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ + I V LVAV+K V + IR+A G F EN++QEA
Sbjct: 4 SIAERIAQIRAAI----------PPEVRLVAVTKTVSVEAIRLAYEAGVRDFGENRVQEA 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K + L+ D+ IG LQSNK + ++ FD + +V K A L +QSR
Sbjct: 54 EAKQLQLQDLRDITWHLIGHLQSNKAATAIAHFDWLHSVDSWKLAQRLDRLAREQSRCPR 113
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLS 178
+ +QV + K G + + LN++GLM IPP + F
Sbjct: 114 ICLQVKILPDPNKYGWTVPELLADLPQLNACESLNIQGLMTIPPQGLTETQTRSVFEKTR 173
Query: 179 EIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A E K+ +LSM + LA+ +GAT +R G IFG R
Sbjct: 174 QLAAEIGAQNWSHIKMAELSMVCQGTYLLAVEAGATMIRPGQIIFGPR 221
>gi|85712848|ref|ZP_01043890.1| Predicted enzyme with a TIM-barrel fold [Idiomarina baltica OS145]
gi|85693312|gb|EAQ31268.1| Predicted enzyme with a TIM-barrel fold [Idiomarina baltica OS145]
Length = 231
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 76/226 (33%), Positives = 111/226 (49%), Gaps = 12/226 (5%)
Query: 2 SLGNKLQVFKQKIEN-SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
++ L +Q I + R +SV L+AVSK ++ IRVA GQ FAEN +QE
Sbjct: 8 NIVKSLGQIRQNINAMAEQTTYR--ESVRLLAVSKKHSAEAIRVAYEAGQREFAENYVQE 65
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L+ D+ FIG LQSNK + FD ++++ REK A L+ + L
Sbjct: 66 GVAKVQQLQA-LDITWHFIGPLQSNKTKLVAEHFDWVQSIDREKIARRLNDQRSGALPPL 124
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V +QVN + KSG+ + + L + G+M I A + K F +
Sbjct: 125 NVLLQVNIDNDPNKSGVKKSDINALAKFVSKCPHLKLRGIMTILEADTDEKQQLDSFTSM 184
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ ++ + + LSMGM+ D AI +GA VRIGS IFG+R
Sbjct: 185 RELYQQLQQLHPSVDTLSMGMSGDMRQAIHAGANMVRIGSAIFGQR 230
>gi|172059708|ref|YP_001807360.1| alanine racemase domain-containing protein [Burkholderia ambifaria
MC40-6]
gi|171992225|gb|ACB63144.1| alanine racemase domain protein [Burkholderia ambifaria MC40-6]
Length = 232
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 75/231 (32%), Positives = 107/231 (46%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS +L ++I ++A A R +VSL+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDFAARLDSVHRRIADAARAAGRDPATVSLLAVSKTFPADDVRAAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L ++ FIG LQSNK + FD + ++ R K A L+ +
Sbjct: 61 ESIDKIDALADLRTGLEWHFIGPLQSNKTRPVAERFDWVHSIDRLKIAQRLAEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V +QVN E KSG+ P + L + GLM IP G+
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADVAEVARAVAALPTLRLRGLMAIPEPAGDTDAQRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+ GAT VR+G+ +FG R
Sbjct: 181 ALRALFDTLRADGLPLDTLSMGMSADLEAAVLEGATIVRVGTALFGARDYS 231
>gi|182417963|ref|ZP_02949272.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237667346|ref|ZP_04527330.1| pyridoxal phosphate enzyme, YggS family [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182378134|gb|EDT75669.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237655694|gb|EEP53250.1| pyridoxal phosphate enzyme, YggS family [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 221
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 22/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ K+ I D V L+AVSK + + A +CG F ENK+QE
Sbjct: 1 MGIKENIEYLKKSI----------PDDVMLLAVSKTKPLEYLEEAYNCGMRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K DV+ IG LQ+NKV +V +I ++ +++ K
Sbjct: 51 LVDKYENFHK--DVRWHLIGHLQTNKVKYLVGKVFLIHSLDSVNLLNVIERVFEKADLTA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLS 178
IQ+N G E K+GI+ ++F+ + ++V+G+M I P + +F
Sbjct: 109 ETLIQINIGREDSKTGILEEDLEEFLQEIEKCKHVSVKGIMVIIPQGDEESNRNYFRKTK 168
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+I + K + LSMGMT D+E AI G+T VRIG+GIFGER T
Sbjct: 169 QIFEDLKKRKFNNINMQILSMGMTHDYETAIEEGSTLVRIGTGIFGERNYIT 220
>gi|332884068|gb|EGK04348.1| YggS family pyridoxal phosphate enzyme [Dysgonomonas mossii DSM
22836]
Length = 222
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L K+ + ++V LVAVSK + I+ GQ +F E+++QE
Sbjct: 1 MNISDNLHKIKEAL----------PETVKLVAVSKFHPVEAIQKLYDTGQRVFGESRMQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L + D++ FIG LQ+NKV I+ I +V K + + + ++ +
Sbjct: 51 VDQKYNKLPQ--DIEWHFIGHLQTNKVKAIIPYVHTIHSVDSWKLLQEIDKQATRVNKRI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGN---PKPHFY 175
++++ E K G+ + + + L +Q + G+M + N + F
Sbjct: 109 CCLLEIHIAEEDSKYGLSFDACRQMLNEGLWKQLKYAYIGGVMGMATFTDNVDLIRTEFR 168
Query: 176 LLSEIARECKLT---------KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + K ++SMGM+ D+E+A+ GAT VR+GS IFG+R
Sbjct: 169 SLKLFYDKLKADYFQDFDSFSEISMGMSDDYEIAVEEGATIVRVGSSIFGQREY 222
>gi|317480381|ref|ZP_07939481.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. 4_1_36]
gi|316903459|gb|EFV25313.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. 4_1_36]
Length = 221
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 66/232 (28%), Positives = 107/232 (46%), Gaps = 26/232 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ ++ + V LVAVSK ++ I A GQ +F E+K+QE
Sbjct: 2 IAENLKQVLSEL----------PEKVRLVAVSKFHPNEAIEEAYRAGQRVFGESKVQEMT 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L K D++ FIG LQ+NK+ IV +I + K + + + K + +
Sbjct: 52 AKCESLPK--DIEWHFIGHLQTNKIKYIVPYVALIHGIDSYKLLAEVDKQAAKAGKTVNC 109
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
+Q++ E K G ++ ++ + R+ + + GLM + N + F L
Sbjct: 110 LLQLHIAREETKFGFSFDECREMLAAGEWRELKHIRICGLMGMATNTDNDEQIKTEFCSL 169
Query: 178 SEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
S E K +LSMGM+ D+ AIA+G+T +R+GS IFGER
Sbjct: 170 SSFFNEVKAKWFADAESFRELSMGMSHDYHEAIAAGSTLIRVGSKIFGERNY 221
>gi|167750503|ref|ZP_02422630.1| hypothetical protein EUBSIR_01479 [Eubacterium siraeum DSM 15702]
gi|167656429|gb|EDS00559.1| hypothetical protein EUBSIR_01479 [Eubacterium siraeum DSM 15702]
Length = 241
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 12/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ KQ I + A R D+V ++AV+K V +KI A S G + EN++QE
Sbjct: 16 DIKLNYTAVKQNIAEAMDKAGRC-DTVRIMAVTKTVPCEKINYAESLGIDLLGENRVQEF 74
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ ++ ++ FIG LQ NKV I+ +I +V + A+ +
Sbjct: 75 LGKYENYSEKSEI--HFIGGLQKNKVKYIIDKVSMIHSVDSVELAAEIDRRAGSHGLVKD 132
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +++N G E K GI P++ + + + GLM IPP + + +F + E+
Sbjct: 133 ILLEINIGGEESKGGIAPSELIETAKAVSGLENVRIRGLMTIPPVNCD-EKYFASMQELF 191
Query: 182 RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
K + LSMGM+ D+ A+ G+T VRIGSG+FG R
Sbjct: 192 ENSKQKYSFLSGMDTLSMGMSGDYATAVKYGSTLVRIGSGLFGYRNYS 239
>gi|332654858|ref|ZP_08420600.1| pyridoxal phosphate enzyme, YggS family [Ruminococcaceae bacterium
D16]
gi|332516201|gb|EGJ45809.1| pyridoxal phosphate enzyme, YggS family [Ruminococcaceae bacterium
D16]
Length = 235
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 70/231 (30%), Positives = 118/231 (51%), Gaps = 13/231 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++K+ +A A R ++L A +K+ IR A++ G + EN++QE
Sbjct: 1 MSIQEHVNAVREKMAAAAKAAGRDPGEITLCAATKVQTDDTIREAIAAGITVCGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ Q+ FIG LQ+NKV+++V D+I +V E+ + + K
Sbjct: 61 LTA-HLEANAYEGAQVHFIGHLQTNKVNKVVGKVDLIHSVDSERLLRAIDRQADKLGLVQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
V ++VN E+ K G P++ + L + + + GLM IPP G+ P+F ++
Sbjct: 120 DVLLEVNVAGELSKGGCTPDEAWELAQLAQSLEHVRLRGLMAIPPIAQKPGDNTPYFSIM 179
Query: 178 SEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ + K + LSMGM+ D+E AIA GAT VR+G+ +FG RP
Sbjct: 180 KKLYVDIKEKIAHNQDDMDCLSMGMSGDYEDAIAQGATLVRVGTALFGPRP 230
>gi|330823646|ref|YP_004386949.1| hypothetical protein Alide2_1026 [Alicycliphilus denitrificans
K601]
gi|329309018|gb|AEB83433.1| protein of unknown function UPF0001 [Alicycliphilus denitrificans
K601]
Length = 264
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 67/223 (30%), Positives = 99/223 (44%), Gaps = 11/223 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +I + A R SV L+ VSK ++R+A + G + ENK QEA KW
Sbjct: 25 LATVQARIAAACQRAGRDPASVRLLPVSKTQPEARVRLAHAAGCRLLGENKPQEALGKWQ 84
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ ++ IG LQ+NK + + + + A L + + R L V++QV
Sbjct: 85 ATQDLPGLRWSVIGHLQTNKARLVARFASEFQALDSLRVAEALERRLQAEGRALDVFVQV 144
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL--------- 177
NT E K G++P + F+ L V GLM + +
Sbjct: 145 NTSGEASKYGLLPREVAAFLRALPAFPALRVRGLMTLALFSSDAARVRRCFVLLRTLRDR 204
Query: 178 --SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E L +LSMGM+ DFE+AI GAT VR+G +FG R
Sbjct: 205 LRQEAPAGITLEELSMGMSGDFEIAIEEGATVVRVGQALFGAR 247
>gi|4455209|emb|CAB36532.1| putative Proline synthetase associated protein [Arabidopsis
thaliana]
gi|7269539|emb|CAB79541.1| putative Proline synthetase associated protein [Arabidopsis
thaliana]
Length = 262
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 74/255 (29%), Positives = 112/255 (43%), Gaps = 36/255 (14%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L+ + +A R + V ++ VSK IR G F EN +QE
Sbjct: 9 TVASALRSVILRARKAAEQVGRDAERVRVLPVSKTKPVSLIRQIYDAGHRCFGENYVQEI 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR 118
K L + D++ F+G LQSNK + V ++ V EK A+ L + R
Sbjct: 69 IDKAPQLPE--DIEWHFVGHLQSNKAKTLLTGVPNLAMVHGVDGEKVANHLDRAVSNLGR 126
Query: 119 -FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIP-PAMGNPKPHFY 175
L V +QVNT E+ KSGI P+ + + L GLM I P + +F
Sbjct: 127 HPLKVLVQVNTSGEVSKSGIEPSSVVELARHVKHHCPNLVFSGLMTIGMPDYTSTPENFR 186
Query: 176 LL----------------------SEIARECKLT----KLSMGMTRDFELAIASGATSVR 209
+ +++ + + +LSMGM+ DFELAI G+T+VR
Sbjct: 187 VFYYLIGYLFYVFSGYSYKFYLPRADVCKALGMAEDQFELSMGMSGDFELAIEMGSTNVR 246
Query: 210 IGSGIFGER--PCQT 222
+GS IFG R P +T
Sbjct: 247 VGSTIFGPREYPKKT 261
>gi|148653680|ref|YP_001280773.1| alanine racemase domain-containing protein [Psychrobacter sp.
PRwf-1]
gi|148572764|gb|ABQ94823.1| alanine racemase domain protein [Psychrobacter sp. PRwf-1]
Length = 238
Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats.
Identities = 75/239 (31%), Positives = 106/239 (44%), Gaps = 26/239 (10%)
Query: 2 SLGNKLQVFKQKIENSAIL-AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+L Q Q+IE + A +P V+L+AVSK + I GQ F EN LQE
Sbjct: 5 TLVQNWQQVTQQIEAARQHCAGQP---VTLLAVSKTKPADMIVTLAQAGQKHFGENYLQE 61
Query: 61 AKKKWIPLRK------------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASL 108
A K + K + +IG +Q NK +I FD + T+ R+ A
Sbjct: 62 AVDKQHQVAKLLTKSEDGDVSSAPPIVWHYIGHIQRNKTKDIAEAFDWVHTIERDIIAKR 121
Query: 109 LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG 168
L + L V IQVN +E KSG +P++ + + + L + GLM IP G
Sbjct: 122 LDAQRPSHLPKLNVLIQVNIDHEESKSGCLPDELEALIASIKGYGNLCLRGLMIIPSKEG 181
Query: 169 NPKPHFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F ++ ++ K LSMGM+ D AI G+T VR+GS IFG R
Sbjct: 182 I--DAFERTKQLFKQIKQAHPDLPNWDTLSMGMSADMADAIEQGSTMVRVGSAIFGARD 238
>gi|219670058|ref|YP_002460493.1| alanine racemase domain protein [Desulfitobacterium hafniense
DCB-2]
gi|219540318|gb|ACL22057.1| alanine racemase domain protein [Desulfitobacterium hafniense
DCB-2]
Length = 233
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 69/229 (30%), Positives = 116/229 (50%), Gaps = 13/229 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L +Q+I+ +A+ + R ++ L+AVSK + + ++ A GQ FAEN++QE
Sbjct: 1 MDIYGSLSAVRQRIQQAAVKSGRDPSAIKLLAVSKTMSAGTVQRAYEAGQRSFAENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L D + IG LQ+NKV + ++I ++ R L + +++
Sbjct: 61 WQDKVTQLPA--DCEWHLIGRLQTNKVKYLDERINLIHSLDRLSLLETLESQGAQRNIIW 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
P +QVN + QK+G++ + +DF+ + V GLM I +P+ F L
Sbjct: 119 PTLVQVNIARDSQKAGLLAEEVEDFLREAAGCQHIQVYGLMTIGALGASPEDTQGFFREL 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + L +LSMGM++DF AI G+T +R+G IFGER
Sbjct: 179 RLLKERLQQKNLPHVNLKELSMGMSQDFGWAIQEGSTIIRVGRQIFGER 227
>gi|120609338|ref|YP_969016.1| alanine racemase domain-containing protein [Acidovorax citrulli
AAC00-1]
gi|120587802|gb|ABM31242.1| alanine racemase domain protein [Acidovorax citrulli AAC00-1]
Length = 241
Score = 255 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 76/236 (32%), Positives = 107/236 (45%), Gaps = 17/236 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++GN LQ +I + A R V L+AVSK + +R A GQ F EN +QE
Sbjct: 3 TIGNNLQGVLDRIARACAQAGREPSGVRLLAVSKTFGAPSVREAALAGQRAFGENYIQEG 62
Query: 62 KKKWIPLRKEW-----DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+K L + ++ IG +QSNK + FD + TV R KTA LS +
Sbjct: 63 VEKIAALGQPESGLAHPLEWHCIGPVQSNKTRLVAEHFDWVHTVDRLKTAERLSQQRPDH 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF-- 174
L V IQVN K+G+ P++ + + +L + GLM IP + F
Sbjct: 123 LPALQVCIQVNVDGGATKAGLPPDEAPGLALAVARLPRLRLRGLMAIPEPAPDFAAQFAV 182
Query: 175 -YLLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + LS+GMT D E AI +G+T VR+GSGIFG R
Sbjct: 183 HAQAKALFDRLRASGAPGLEDFDTLSLGMTADLEAAIHAGSTMVRVGSGIFGARSY 238
>gi|319409377|emb|CBI83021.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 226
Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats.
Identities = 105/216 (48%), Positives = 149/216 (68%), Gaps = 1/216 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ +Q I + R +SV L+AVSK V +++I L GQ++FAEN++QEA +K
Sbjct: 10 EAWKNLQQDIAATCKDYHRSLESVELIAVSKTVAAQQIVPLLQAGQLLFAENRVQEAAQK 69
Query: 65 WIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W L+++++ ++L IG LQSNKV E V +FDVI+TV REK A LS EM KQ ++LP Y
Sbjct: 70 WPCLQEQFEAIKLHLIGPLQSNKVVEAVKIFDVIQTVDREKIAQKLSEEMNKQKKYLPCY 129
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVN G E QKSGI P + DFV LC+ KY L++ GLM IPP NP P+F LL+++A++
Sbjct: 130 VQVNIGLEPQKSGIAPQEVADFVSLCKNKYGLDIIGLMAIPPVEENPGPYFALLAKLAKK 189
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++KLSMGM+ DF+ A+ GA +RIG+ +FG+RP
Sbjct: 190 AGVSKLSMGMSNDFKTALQFGANVLRIGTALFGQRP 225
>gi|270296423|ref|ZP_06202623.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. D20]
gi|270273827|gb|EFA19689.1| YggS family pyridoxal phosphate enzyme [Bacteroides sp. D20]
Length = 221
Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats.
Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 26/232 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ ++ + V LVAVSK ++ I A GQ +F E+K+QE
Sbjct: 2 IAENLKQVLSEL----------PEKVRLVAVSKFHPNEAIEEAYRAGQRVFGESKVQEMT 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L K D++ FIG LQ+NK+ IV +I + K + ++ + K + +
Sbjct: 52 AKYKSLPK--DIEWHFIGHLQTNKIKYIVPYVALIHGIDSYKLLAEVNKQAAKAEKTVNC 109
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
+Q++ E K G ++ ++ + R+ + + GLM + N + F L
Sbjct: 110 LLQLHIAREETKFGFSFDECREMLAAGEWRELKHIRICGLMGMATNTDNDEQIKTEFCSL 169
Query: 178 SEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
S E K +LSMGM+ D+ AIA+G+T +R+GS IFGER
Sbjct: 170 SSFFNEVKAKWFADAESFRELSMGMSHDYHEAIAAGSTLIRVGSKIFGERNY 221
>gi|320108336|ref|YP_004183926.1| alanine racemase domain-containing protein [Terriglobus saanensis
SP1PR4]
gi|319926857|gb|ADV83932.1| alanine racemase domain protein [Terriglobus saanensis SP1PR4]
Length = 235
Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats.
Identities = 75/234 (32%), Positives = 110/234 (47%), Gaps = 16/234 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L + +I + A R V L+AVSK + + A GQ +F ENK+QE
Sbjct: 1 MSIAENLSEIRAEIAAACEKAGRDASEVKLMAVSKTHPPQMLAEAYRAGQTLFGENKVQE 60
Query: 61 AKKKWIPL-----RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
+ K L + V++ IG+LQSNK ++ F I+ V K A+ L+ +
Sbjct: 61 WEHKRDQLHSLIGEEVAKVEMHLIGNLQSNKANKAAWAFSGIDAVDSVKVAAKLNSVSAQ 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKP 172
LPV I+V E K G+ + + + V G M +P + +P
Sbjct: 121 SGLVLPVLIEVKLSEEETKHGLPEYALSGVLREILEFDGIEVRGFMTVPAFTEDVEGARP 180
Query: 173 HFYLLSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+F L EI + L +LSMGM+ DF +AI G+T VRIG+GIFG R
Sbjct: 181 YFKKLREIRDAMRSEFHGDLALPELSMGMSHDFAVAIEEGSTCVRIGTGIFGSR 234
>gi|17227982|ref|NP_484530.1| hypothetical protein alr0486 [Nostoc sp. PCC 7120]
gi|17129831|dbj|BAB72444.1| alr0486 [Nostoc sp. PCC 7120]
Length = 222
Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats.
Identities = 71/223 (31%), Positives = 108/223 (48%), Gaps = 14/223 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ ++I I A P SV L+AV+K + ++ IR A + G F EN++QEA K
Sbjct: 2 ISSINERITQ--IRASLPP-SVRLIAVTKQMPTEVIRAAYAAGIRDFGENRIQEAASKKA 58
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L D+ FIG LQ+NK + + F I +V K A L + V +QV
Sbjct: 59 QLHDLPDITWHFIGHLQANKAKKALEQFQWIHSVDNLKLAQRLDQLAQQLGVNPQVCLQV 118
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-------SE 179
+ KSG + + L ++GLM IPP N FY+ +
Sbjct: 119 KILPDPNKSGWTVPELLTDLPALNHCKTLQIQGLMTIPPFGLNDAEIFYVFNTTYKLAKD 178
Query: 180 IARE----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IA + + +LSMGM+ D++LA+ +GAT VR+G+ +FG+R
Sbjct: 179 IAEQNWDHIHMGQLSMGMSGDYQLAVQAGATMVRLGTILFGQR 221
>gi|239826536|ref|YP_002949160.1| alanine racemase domain protein [Geobacillus sp. WCH70]
gi|239806829|gb|ACS23894.1| alanine racemase domain protein [Geobacillus sp. WCH70]
Length = 226
Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats.
Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L + ++ IE + R + +VAV+K V K+ R AL G EN+
Sbjct: 2 MTVRDNLAIIRENIEAACQRVGRNPADIRIVAVTKYVSVKRAREALEAGITDLGENRDDG 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK+ L E FIG+LQS KV I+ D I ++ R A + K+ +
Sbjct: 62 LLKKYEALGAEP--TWHFIGTLQSRKVKNIIDKVDYIHSLDRMSLAKEIEKRATKR---V 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K G+ + F+ + + V GLM + P + + F L
Sbjct: 117 KCFVQVNVSGEATKHGLAKEEVIPFIQQLQDFSHIEVIGLMTMAPYTDDESILRTCFRQL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ + T+LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 177 KLLQENVQALHIPNAPCTELSMGMSNDYVIAIEEGATFIRLGTSLVGK 224
>gi|213403758|ref|XP_002172651.1| alanine racemase [Schizosaccharomyces japonicus yFS275]
gi|212000698|gb|EEB06358.1| alanine racemase [Schizosaccharomyces japonicus yFS275]
Length = 240
Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats.
Identities = 77/236 (32%), Positives = 118/236 (50%), Gaps = 21/236 (8%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M+ L ++L + ++ +A R V LVAVSK + + A + GQ F EN +
Sbjct: 1 MTTPLQSRLAQVQGHVKAAAQ--GRD---VRLVAVSKFHPVESLMEAYNAGQRHFGENYM 55
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMIKQ 116
QE K + K DV FIG++QS+K +I IETV EK A L++ +
Sbjct: 56 QELLAKAQVMPK--DVNWHFIGAMQSSKCKKIASIENLWCIETVDTEKKARLINSAREEL 113
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN----PK 171
++ L VY+QVNT E KSG+ P + L ++G+M I +
Sbjct: 114 NKPLRVYVQVNTSGEDNKSGVAPEDALPLCKFIKDSCSHLQLQGIMTIGSFTNSLNEKTN 173
Query: 172 PHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
P F L ++ ++ + ++SMGM+ D+ELAI G+ +VR+G IFGERP +
Sbjct: 174 PDFEKLIQLRKQLENDLSCKLEVSMGMSADYELAIQYGSDNVRVGRTIFGERPVEN 229
>gi|153871106|ref|ZP_02000360.1| conserved hypothetical protein [Beggiatoa sp. PS]
gi|152072430|gb|EDN69642.1| conserved hypothetical protein [Beggiatoa sp. PS]
Length = 228
Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats.
Identities = 74/224 (33%), Positives = 107/224 (47%), Gaps = 9/224 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q+I + R + L+AVSK I A+ Q F EN LQ+A
Sbjct: 2 ISETLTTVRQRIAKACQQFARSPSDIQLLAVSKTRPVADIVTAIKNDQFRFGENYLQDAL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ + ++ FIG LQSNK I FD +++V + K A L+ + Q L V
Sbjct: 62 PKIEALQA-YPLEWHFIGPLQSNKTRLIAEHFDWVQSVDKLKYAQRLNAQRPAQLLPLNV 120
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLSE 179
IQVN E+QK+G+ + +L + GLM +P + F +
Sbjct: 121 CIQVNISEEVQKAGVGLADLLPLAQAIAELPRLRLRGLMALPAPHQVFEQQRMPFRAIYT 180
Query: 180 IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + L LSMGMT D AIA G+T VRIG+GIFG+R
Sbjct: 181 AYQQLQTSGLVLDTLSMGMTNDMMAAIAEGSTLVRIGTGIFGKR 224
>gi|327482661|gb|AEA85971.1| TIM-barrel fold family protein [Pseudomonas stutzeri DSM 4166]
Length = 201
Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats.
Identities = 75/196 (38%), Positives = 98/196 (50%), Gaps = 6/196 (3%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
L+AVSK + IR A + G F EN LQEA K L + + FIG +QSNK
Sbjct: 3 LLAVSKTQPAAAIRDAFAAGLRDFGENYLQEALDKQAEL-DDLPLTWHFIGPIQSNKTKA 61
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
I FD + +V R K A LS + L + +QVN E KSG P + +
Sbjct: 62 IAEHFDWVHSVDRLKIAQRLSDQRPAALPPLNICLQVNVSGEASKSGCAPQEVQQLARAI 121
Query: 150 RQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE--CKLTKLSMGMTRDFELAIASG 204
+L + GLMCIP +P + F L ++ E L LSMGM++D E AIA G
Sbjct: 122 TALPRLRLRGLMCIPAPSEDPAEQRAAFARLRQLRDELALDLDTLSMGMSQDLEAAIAEG 181
Query: 205 ATSVRIGSGIFGERPC 220
AT VRIG+ +FG R
Sbjct: 182 ATWVRIGTALFGARDY 197
>gi|300777152|ref|ZP_07087010.1| YggS family pyridoxal phosphate enzyme [Chryseobacterium gleum ATCC
35910]
gi|300502662|gb|EFK33802.1| YggS family pyridoxal phosphate enzyme [Chryseobacterium gleum ATCC
35910]
Length = 246
Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats.
Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 13/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L ++I+ + + R D V L+ +K V +I++AL G + AENK+QE
Sbjct: 4 DILHNLAAINERIKKACEQSGRNTDDVKLLLATKTVPPDRIKIALENGYTLIAENKVQEL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFL 120
K+K+ L+ + FIG LQ+NK+ +I+ ++++ R + A L ++ ++R +
Sbjct: 64 KEKYEDLKSIPH-ESHFIGHLQTNKIKDILKYDVICVQSLDRLELAEKLHQRLLAENRTM 122
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
V+IQVNT E K G+ P+Q + L ++GLM I + F +L
Sbjct: 123 DVWIQVNTSNEESKFGVNPDQAIEITRKISNYSTLKIKGLMTIGLFSAETDKVRACFKIL 182
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ ++ +LSMGM+ D E AI GAT VR+G+ +FG R
Sbjct: 183 KNLQQDIIRENIPNVEMKELSMGMSGDLETAIEEGATIVRVGTAVFGAR 231
>gi|291530262|emb|CBK95847.1| pyridoxal phosphate enzyme, YggS family [Eubacterium siraeum 70/3]
gi|291557078|emb|CBL34195.1| pyridoxal phosphate enzyme, YggS family [Eubacterium siraeum
V10Sc8a]
Length = 241
Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 12/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ KQ I + A R D+V ++AV+K V +KI A S G + EN++QE
Sbjct: 16 DIKLNYTAIKQNIAEAMDKAGRC-DTVRIMAVTKTVPCEKINYAESLGIDLLGENRVQEF 74
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ ++ ++ FIG LQ NKV I+ +I +V + A+ +
Sbjct: 75 LGKYENYSEKSEI--HFIGGLQKNKVKYIIDKVSMIHSVDSVELAAEIDRRAGSHGLVKD 132
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +++N G E K GI P++ + + + GLM IPP + + +F + E+
Sbjct: 133 ILLEINIGGEESKGGIAPSELIETAKAVSGLENVRIRGLMTIPPVNCD-EKYFASMQELF 191
Query: 182 RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
K + LSMGM+ D+ A+ G+T VRIGSG+FG R
Sbjct: 192 ENSKQKYSFLSGMDTLSMGMSGDYATAVKYGSTLVRIGSGLFGYRNYS 239
>gi|198275265|ref|ZP_03207796.1| hypothetical protein BACPLE_01424 [Bacteroides plebeius DSM 17135]
gi|198271848|gb|EDY96118.1| hypothetical protein BACPLE_01424 [Bacteroides plebeius DSM 17135]
Length = 222
Score = 255 bits (653), Expect = 3e-66, Method: Composition-based stats.
Identities = 66/232 (28%), Positives = 106/232 (45%), Gaps = 26/232 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ + ++ VSLVAVSK ++ I A GQ IF E+K QE
Sbjct: 1 MDIQSNLKEVRAQL----------PPQVSLVAVSKFHPNEAILAAYETGQRIFGESKEQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK L D+Q FIG LQ+NKV I +I V K + + + K +R +
Sbjct: 51 LSKKQASLPA--DIQWHFIGHLQTNKVKYIAPYIAMIHAVDSYKLLAEIDKQAAKCNRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNPKP---HFY 175
P ++++ E K G ++ + ++ + + G+M + + F
Sbjct: 109 PCLLEIHIAEEESKYGFSFEACREMLETTPWKELTHVCISGVMGMATNTDDESQIINEFE 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E K ++SMGM+ D+ LA+ +G+T VR+GS IFG+R
Sbjct: 169 SLHRFFTELKATYFKDCDTFKEISMGMSHDYMLAVQAGSTMVRVGSKIFGDR 220
>gi|284007793|emb|CBA73650.1| amino acid racemase [Arsenophonus nasoniae]
Length = 203
Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats.
Identities = 73/202 (36%), Positives = 98/202 (48%), Gaps = 8/202 (3%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ ++L+AVSK I+ A+ GQ F EN LQE +K R + D+ FIG+LQS
Sbjct: 2 PEDITLLAVSKTKSCDAIQEAIDAGQYQFGENYLQEGIEKIAYFRHKQDLIWHFIGALQS 61
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK + FD T+ R K A L+ + L V IQ+N EI KSGI P +
Sbjct: 62 NKSRLVAEHFDWCHTIDRLKIAQRLNNQRPINKTPLNVLIQINISDEISKSGIAPEELDK 121
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIARECK-----LTKLSMGMTRD 196
L + GLM IP F + + + K + LSMGMT D
Sbjct: 122 LAAEIVLLPNLKLRGLMAIPAPNNELSQQISIFRSMENLFNQLKKQYPNIDTLSMGMTAD 181
Query: 197 FELAIASGATSVRIGSGIFGER 218
++AIA G+T VRIG+ IFG R
Sbjct: 182 LDIAIAWGSTLVRIGTAIFGSR 203
>gi|313892936|ref|ZP_07826513.1| pyridoxal phosphate enzyme, YggS family [Veillonella sp. oral taxon
158 str. F0412]
gi|313442289|gb|EFR60704.1| pyridoxal phosphate enzyme, YggS family [Veillonella sp. oral taxon
158 str. F0412]
Length = 228
Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats.
Identities = 72/226 (31%), Positives = 110/226 (48%), Gaps = 12/226 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q++ ++ R D+ LVAV+K + A S G EN++QEAK
Sbjct: 2 IEESLHAIQQRMADAMARVGR-VDTALLVAVTKNHPVSAVEEAASLGVTHVGENRVQEAK 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + K + IG LQ NKV + V +FD+I +V K + K + V
Sbjct: 61 EKQLTY-KGPQLTWHLIGHLQVNKVRQAVPMFDLIHSVDSRKLLDEIEKVATKHDKVQDV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+QVN E K+G+ + + + + V GLMC+ P NP +P F + +
Sbjct: 120 LLQVNVAREASKTGMSVEEFPEIRDYAKTLPHVRVRGLMCMAPFFDNPEEARPIFRVANA 179
Query: 180 IARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K + LSMGMT DFE+A+ GA VR+G+ IFGER
Sbjct: 180 LYEDMKGYFEEGQIQYLSMGMTHDFEVALEEGANIVRVGTAIFGER 225
>gi|330810813|ref|YP_004355275.1| alanine racemase [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|327378921|gb|AEA70271.1| Putative alanine racemase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 273
Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats.
Identities = 73/224 (32%), Positives = 108/224 (48%), Gaps = 11/224 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +Q+I ++ R SV L+ VSK D +R+A G + ENK+QEA++K
Sbjct: 31 NLAAVQQRISSACQRVGRDPASVRLLPVSKTFDEAHLRLAYVAGCRLLGENKVQEAQRKR 90
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ D+Q IG LQ+NKV ++ + + + A L + + R + V++Q
Sbjct: 91 EAMADLTDLQWSIIGHLQTNKVKQVARFASEFQALDSLRVAEALDRRLQVEGRRMDVFVQ 150
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIAR 182
VNT E+ K G+ P F+ L V GLM + + +P F L E+
Sbjct: 151 VNTSGEVSKYGLPPEAVAAFLRALPAFSTLRVRGLMTLALFSADVARVRPCFVRLRELRE 210
Query: 183 E--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 211 RLRQDAPVGIGLEELSMGMSGDFEIAIEEGATVVRVGQAIFGAR 254
>gi|315651406|ref|ZP_07904431.1| cell division protein YlmE [Eubacterium saburreum DSM 3986]
gi|315486365|gb|EFU76722.1| cell division protein YlmE [Eubacterium saburreum DSM 3986]
Length = 226
Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats.
Identities = 65/227 (28%), Positives = 117/227 (51%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ ++ I+ + + R + V+L+AVSK ++ I A G F ENK+QE
Sbjct: 2 VKENLENVERNIKLACEKSGRDINDVTLIAVSKTKPNELIMEAYEAGIRDFGENKVQELV 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L K D++ IG LQ+NKV +++ +I ++ + A + E IK+ +
Sbjct: 62 RKCEELPK--DIRWHMIGHLQTNKVRQLLGNTVLIHSIDSIRLADTIDTEAIKKGIHVDG 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+++N E K G + + ++ + L + L+++GLM I P + + + F L +
Sbjct: 120 LLEINVAKEASKYGFVEEELEEILPLFGRYKNLHIKGLMTIAPDVDDAEKNRKIFKKLKK 179
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ LSMGMT D+ +A+ GA VR+G+GIFG+R
Sbjct: 180 LYVDINEKNYDNIEVKFLSMGMTGDYTVAVEEGAGFVRVGTGIFGKR 226
>gi|53725752|ref|YP_103964.1| hypothetical protein BMA2411 [Burkholderia mallei ATCC 23344]
gi|67643504|ref|ZP_00442249.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
gi|121601554|ref|YP_991679.1| hypothetical protein BMASAVP1_A0328 [Burkholderia mallei SAVP1]
gi|124386248|ref|YP_001027174.1| hypothetical protein BMA10229_A1189 [Burkholderia mallei NCTC
10229]
gi|126450302|ref|YP_001082124.1| hypothetical protein BMA10247_2598 [Burkholderia mallei NCTC 10247]
gi|166998486|ref|ZP_02264344.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei
PRL-20]
gi|254178844|ref|ZP_04885498.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei ATCC
10399]
gi|254202680|ref|ZP_04909043.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei FMH]
gi|254208020|ref|ZP_04914370.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei JHU]
gi|254355840|ref|ZP_04972118.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei
2002721280]
gi|52429175|gb|AAU49768.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei ATCC
23344]
gi|121230364|gb|ABM52882.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei
SAVP1]
gi|124294268|gb|ABN03537.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei NCTC
10229]
gi|126243172|gb|ABO06265.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei NCTC
10247]
gi|147746927|gb|EDK54004.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei FMH]
gi|147751914|gb|EDK58981.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei JHU]
gi|148024815|gb|EDK82993.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei
2002721280]
gi|160694758|gb|EDP84766.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei ATCC
10399]
gi|238524864|gb|EEP88294.1| conserved hypothetical protein [Burkholderia mallei GB8 horse 4]
gi|243065176|gb|EES47362.1| conserved hypothetical protein TIGR00044 [Burkholderia mallei
PRL-20]
Length = 245
Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats.
Identities = 81/230 (35%), Positives = 111/230 (48%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 61 ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V +QVN E KSG+ P L + GLM IP +P+
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLRGLMAIPEPETDPEAKRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + + + L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 181 ALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDY 230
>gi|317405236|gb|EFV85574.1| alanine racemase [Achromobacter xylosoxidans C54]
Length = 275
Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats.
Identities = 68/226 (30%), Positives = 101/226 (44%), Gaps = 11/226 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ L V +++ + R V L+ VSK +D +IR+A + G + ENK+QEA +
Sbjct: 38 RHNLAVIHARMDAACRRVGRDPAGVRLLPVSKTMDESRIRLAHAAGCRLLGENKIQEAHR 97
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
KW D++ IG LQ+NK + + + + A L + + R L VY
Sbjct: 98 KWQNTADLPDLRWSVIGHLQTNKAKLMAQFASEFQALDSLRLAEALDRRLQAEGRALDVY 157
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL------ 177
+QVNT E K G+ P+ F+ L V G M + +
Sbjct: 158 VQVNTSGEPSKYGLAPDDVAAFIQALPAFSSLRVRGFMTLALFSSEAERVRQCFVLLRGL 217
Query: 178 -----SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L +LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 218 RDRLRQDAPAGISLDELSMGMSGDFEIAIEEGATVVRVGQAIFGAR 263
>gi|126304071|ref|XP_001381845.1| PREDICTED: similar to proline synthetase co-transcribed homolog
(bacterial), [Monodelphis domestica]
Length = 394
Score = 255 bits (652), Expect = 4e-66, Method: Composition-based stats.
Identities = 78/243 (32%), Positives = 116/243 (47%), Gaps = 22/243 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+ +G L K++++ SA R ++ LVAVSK + + A + GQ F EN +
Sbjct: 130 LGVGLALLAVKERVQQSAARRSRDLPAIQPRLVAVSKTKPADMVIEAYAHGQRSFGENYV 189
Query: 59 QEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEM 113
QE +K L +++ FIG LQ V+++ V ++ETV K A ++
Sbjct: 190 QELLEKASNTKILSSCPEIKWHFIGHLQKQNVNKLIAVPNLYMLETVDSVKLADKVNNSW 249
Query: 114 IKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN- 169
K+ L V +Q+NT E K G+ P++T V + L GLM I +
Sbjct: 250 QKRGSSERLKVMVQINTSGEESKHGLPPSETMATVQHINAKCPNLEFVGLMTIGSFGHDL 309
Query: 170 ---PKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P P F L E+ + L +LSMGM+ DF+ AI G+T+VRIGS IFGER
Sbjct: 310 SKGPNPDFQALLCLRKELCEKLGLPIDQVELSMGMSMDFQHAIEMGSTNVRIGSTIFGER 369
Query: 219 PCQ 221
Sbjct: 370 DYS 372
>gi|241766135|ref|ZP_04764043.1| alanine racemase domain protein [Acidovorax delafieldii 2AN]
gi|241363818|gb|EER59153.1| alanine racemase domain protein [Acidovorax delafieldii 2AN]
Length = 239
Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats.
Identities = 80/236 (33%), Positives = 111/236 (47%), Gaps = 15/236 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N LQ + +I + A R DSVSL+AVSK + + A++ GQ F EN +QE
Sbjct: 3 TIANNLQQVQARIAQACAAAGRDPDSVSLLAVSKTFGADAVLEAVAAGQRAFGENYIQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K +R +Q IG +QSNK + FD TV R K A LS +
Sbjct: 63 VDKIAAVRAALPAAALQWHCIGPIQSNKTRLVAEHFDWAHTVDRLKIAERLSAQRPAHLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L + IQVN K+G+ P + D V + +L V GLM IP P+ +
Sbjct: 123 ALQLCIQVNVDAGPTKAGVPPAEVLDLVCAVAKLPRLQVRGLMSIPDPAPSHEAQRAVHE 182
Query: 176 LLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + K LSMGMT D + AI +G+T VR+G+GIFG R T
Sbjct: 183 SARRLFEQIRQTGAPGLEKFDTLSMGMTADLDAAIQAGSTMVRVGTGIFGGRSRPT 238
>gi|270013195|gb|EFA09643.1| hypothetical protein TcasGA2_TC011768 [Tribolium castaneum]
Length = 248
Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats.
Identities = 78/238 (32%), Positives = 119/238 (50%), Gaps = 29/238 (12%)
Query: 7 LQVFKQKIENSAILAKRPKDS-----VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L+ ++IE +++ LVAV+K + I A GQ F EN +QE
Sbjct: 10 LRKVLERIEQASLK---TPQELRCKPPRLVAVTKTKPVELIVQAYEAGQRHFGENYVQEL 66
Query: 62 KKKWIP---LRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMIKQ 116
++K L K +++ FIG LQ+NK+++++ ++ETV +K A+ L+ K
Sbjct: 67 EEKSHHPLILEKCKEIKWHFIGHLQTNKINKVLATPNLYMVETVHSQKLAANLNKSWPKF 126
Query: 117 SR---FLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN--- 169
L V +Q+NT E +KSGI PN+ D + L++EGLM I +
Sbjct: 127 GPLDSKLNVMVQINTSAEEEKSGIEPNEVVDLTKFVLNECPNLHLEGLMTIGKFGYDISN 186
Query: 170 -PKPHFYLLS----EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P P F L + RE L +LSMGM+ +E AI G+T+VR+G+ IFGER
Sbjct: 187 GPNPDFLTLRSCRDRVCRELGLDWKTVELSMGMSDGYEHAIELGSTNVRVGTAIFGER 244
>gi|160933112|ref|ZP_02080501.1| hypothetical protein CLOLEP_01955 [Clostridium leptum DSM 753]
gi|156868186|gb|EDO61558.1| hypothetical protein CLOLEP_01955 [Clostridium leptum DSM 753]
Length = 252
Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats.
Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 12/230 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + ++ I +A + R + ++L+A +K V ++ I +S G ENK+QE
Sbjct: 21 NLKENYREIRENIAAAAKASGRKPEDITLLAATKTVPAEVINYGISLGIDYLGENKVQEF 80
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ + L+FIG LQ+NKV +IV ++I++V K A ++ +
Sbjct: 81 LSKYDEY-DKKRCHLQFIGHLQTNKVKQIVGKVELIQSVDSVKLAREIAKCSQRLGIVTN 139
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYLLS 178
V ++VN G E KSG+ P + K + Q + V+GLM IPP + +F +
Sbjct: 140 VLVEVNIGGEENKSGVKPEEAKALLREISQIQGILVKGLMAIPPICEKNSEIRRYFAAMR 199
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + LSMGM+ D+ AI GAT VR+GS +FG R
Sbjct: 200 KLFIDIRGENIDNITMDILSMGMSSDYMEAIEEGATMVRVGSSLFGARSY 249
>gi|194014843|ref|ZP_03053460.1| pyridoxal phosphate enzyme, YggS family [Bacillus pumilus ATCC
7061]
gi|194013869|gb|EDW23434.1| pyridoxal phosphate enzyme, YggS family [Bacillus pumilus ATCC
7061]
Length = 229
Score = 254 bits (651), Expect = 4e-66, Method: Composition-based stats.
Identities = 67/227 (29%), Positives = 105/227 (46%), Gaps = 15/227 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L+ ++I + A R D +S+VAV+K V ++ + A G + F EN+ Q
Sbjct: 1 MNVRENLRQINEQINEACKRAGRNPDDISVVAVTKYVSIERAQEAKEAGILHFGENRDQG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + E + FIGSLQ+ KV ++ D + ++ R A+ + +
Sbjct: 61 LLEKQAAITDE-SISWHFIGSLQTRKVKSVIQSIDYLHSLDRISLANEIEKRA---DHTV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
++QVNT E K G+ FV + + GLM + P + + F L
Sbjct: 117 RCFVQVNTSLEESKHGLQNEDVIPFVKQLADFKHIEIAGLMTMAPFTDDHTVIRNCFKTL 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ E K LSMGM+ DFE+AI GAT VRIGS + G
Sbjct: 177 KNLQEEVKHLNQVNAPCQHLSMGMSNDFEIAIEEGATFVRIGSSLVG 223
>gi|218437552|ref|YP_002375881.1| alanine racemase domain protein [Cyanothece sp. PCC 7424]
gi|218170280|gb|ACK69013.1| alanine racemase domain protein [Cyanothece sp. PCC 7424]
Length = 219
Score = 254 bits (651), Expect = 5e-66, Method: Composition-based stats.
Identities = 67/227 (29%), Positives = 106/227 (46%), Gaps = 19/227 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +Q + V L+AV+K V +R A G F EN+LQE
Sbjct: 1 MTIAQRINQIRQHL----------PSHVRLIAVTKQVSPDIMRQAYQAGIRDFGENRLQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L+ D+ FIG LQ+NK +++ F I +V L ++ S
Sbjct: 51 ALSKQEHLQDLPDICWHFIGHLQTNKAKKVLDSFQWIHSVDSLSLLQRLEGYSVELSNPP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
V +QV + K G + + Q Q+ ++GLM I P + F
Sbjct: 111 QVCLQVKVLPDPNKYGWTIPELLQDLPRIEQCTQVKIQGLMTILPWGLDETETLKAFETT 170
Query: 178 SEIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A+E +L +LSMGM+ D+ LAI +GAT +R+G+ +FGER
Sbjct: 171 RDLAQELNERSQLQLRELSMGMSGDYHLAIKAGATMIRLGTILFGER 217
>gi|327284097|ref|XP_003226775.1| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like [Anolis carolinensis]
Length = 276
Score = 254 bits (651), Expect = 5e-66, Method: Composition-based stats.
Identities = 78/244 (31%), Positives = 120/244 (49%), Gaps = 26/244 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
LG L+ +++++ + A+RP+ LVAVSK ++ + A + GQ F EN +
Sbjct: 12 LGAALRTVREQVQQAT--ARRPQSLPAIQPRLVAVSKTKPAEMVIEAYNLGQRSFGENYV 69
Query: 59 QEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEM 113
QE +K L D++ FIG LQ N V+++ V ++ETV K A ++
Sbjct: 70 QELLEKASDSRILSSCPDIKWHFIGHLQKNNVNKLIGVPNLFMLETVDSLKLADRVNASW 129
Query: 114 IKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN- 169
K+ L + +Q+NT E K G+ P +T V ++ L GLM I +
Sbjct: 130 QKKGCSEKLKIMVQINTSGEDSKHGLPPGETVTTVAHILQKCPGLEFVGLMTIGSFGHDL 189
Query: 170 ---PKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P P F +L E+ + + +LSMGM+ DF+ AI G+T+VRIGS IFGER
Sbjct: 190 SMGPNPDFQMLISLRQEMCDKLNIPIEKVELSMGMSTDFQHAIEVGSTNVRIGSTIFGER 249
Query: 219 PCQT 222
Sbjct: 250 DYSN 253
>gi|170078522|ref|YP_001735160.1| hypothetical protein SYNPCC7002_A1917 [Synechococcus sp. PCC 7002]
gi|169886191|gb|ACA99904.1| conserved hypothetical protein TIGR00044 [Synechococcus sp. PCC
7002]
Length = 222
Score = 254 bits (651), Expect = 5e-66, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 102/228 (44%), Gaps = 21/228 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +++I V L+AVSK + KIR+A + G F EN+ QEA
Sbjct: 4 AIAENIARLREEI----------PPEVRLIAVSKTHSAAKIRLAYAAGIRDFGENRFQEA 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K L D++ FIG LQ NK + ++ FD I TV A L
Sbjct: 54 QQKQAELEDLPDIRWHFIGHLQKNKAKKAITHFDWIHTVDSLALAQKLDQYAADLENPAR 113
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLS 178
+Q+ + K G Q + L ++GLM I P + F +
Sbjct: 114 CCLQIKPLPDPNKFGWEIPQLLSELPQLATCQHLKLQGLMTILPLGLSRTETRTAFKQIF 173
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +LT+LSMGM+ D+ LAI +GAT +R+G GIFG R
Sbjct: 174 SLKEQLNQMASLPEQLTELSMGMSGDYPLAIEAGATMIRVGQGIFGAR 221
>gi|283853447|ref|ZP_06370691.1| alanine racemase domain protein [Desulfovibrio sp. FW1012B]
gi|283571167|gb|EFC19183.1| alanine racemase domain protein [Desulfovibrio sp. FW1012B]
Length = 228
Score = 254 bits (651), Expect = 5e-66, Method: Composition-based stats.
Identities = 78/228 (34%), Positives = 108/228 (47%), Gaps = 12/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS +L K++IE + R V+LVAVSK D+ + +CGQ +F E+ +QE
Sbjct: 1 MSAEGRLAGVKKRIEEACRRGGRDPAEVTLVAVSKFHDAAAVAELAACGQTVFGESYIQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RF 119
A K + FIG LQ NK + F +I T+ + A LL + +Q
Sbjct: 61 ALPKMEAGPA--GLTWHFIGHLQRNKGKLAIGRFALIHTLDNLELARLLQKKTGEQGLAP 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
V +QVN E QKSG+ P L++ GLM +PP +P +P F
Sbjct: 119 QAVCLQVNVAGEAQKSGVSPEGLPALAEAVAAMPALSLSGLMVLPPVFDDPDGARPAFAR 178
Query: 177 LSEIAR------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E+ L LSMGM+ D E AI GAT VR+G+ +FG R
Sbjct: 179 LRELRDGLAARLGLALPVLSMGMSGDLEAAILEGATHVRVGTDLFGPR 226
>gi|76808945|ref|YP_334717.1| hypothetical protein BURPS1710b_3346 [Burkholderia pseudomallei
1710b]
gi|76578398|gb|ABA47873.1| conserved hypothetical protein TIGR00044, putative [Burkholderia
pseudomallei 1710b]
Length = 305
Score = 254 bits (651), Expect = 5e-66, Method: Composition-based stats.
Identities = 81/230 (35%), Positives = 111/230 (48%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +Q
Sbjct: 74 MSDLAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQ 133
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 134 ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 193
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V +QVN E KSG+ P L + GLM IP +P+
Sbjct: 194 PLNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLRGLMAIPEPETDPEAKRAPHR 253
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + + + L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 254 ALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDY 303
>gi|313895886|ref|ZP_07829440.1| pyridoxal phosphate enzyme, YggS family [Selenomonas sp. oral taxon
137 str. F0430]
gi|312975311|gb|EFR40772.1| pyridoxal phosphate enzyme, YggS family [Selenomonas sp. oral taxon
137 str. F0430]
Length = 237
Score = 254 bits (651), Expect = 5e-66, Method: Composition-based stats.
Identities = 71/235 (30%), Positives = 110/235 (46%), Gaps = 19/235 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPK----DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+ +L+ + +I + A+R V L+AV+K + +R A+ G + EN++
Sbjct: 7 ICERLRAVRAEIAQA--RARRTHVPVEAPVELIAVTKNHPVEAMRTAIDSGVMNIGENRI 64
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QEA K L +E + IG LQ+NK V FD+I +V E A+ + K +
Sbjct: 65 QEALDKAETLERE--AKWHLIGHLQTNKAKHAVRQFDLIHSVDSEHLAAEIDKAAEKFGK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+ +QVN E KSG+ + L ++G MCI P N +P F
Sbjct: 123 VQNILVQVNLAREASKSGVYREDLDPLLRAVSGLPHLRLQGFMCIAPNYDNEEKCRPLFR 182
Query: 176 LLSEIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ E+ +E K + LSMGMT D+ +A+ GA VR+G+ IFG R T
Sbjct: 183 EMYELFQEAKEKEPPKADIRYLSMGMTHDYTVAVEEGANLVRVGTAIFGARQYNT 237
>gi|282849926|ref|ZP_06259309.1| pyridoxal phosphate enzyme, YggS family [Veillonella parvula ATCC
17745]
gi|294792852|ref|ZP_06757999.1| pyridoxal phosphate enzyme, YggS family [Veillonella sp. 6_1_27]
gi|294794608|ref|ZP_06759744.1| pyridoxal phosphate enzyme, YggS family [Veillonella sp. 3_1_44]
gi|282580363|gb|EFB85763.1| pyridoxal phosphate enzyme, YggS family [Veillonella parvula ATCC
17745]
gi|294454938|gb|EFG23311.1| pyridoxal phosphate enzyme, YggS family [Veillonella sp. 3_1_44]
gi|294456751|gb|EFG25114.1| pyridoxal phosphate enzyme, YggS family [Veillonella sp. 6_1_27]
Length = 228
Score = 254 bits (651), Expect = 5e-66, Method: Composition-based stats.
Identities = 69/226 (30%), Positives = 108/226 (47%), Gaps = 12/226 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q++ ++ R D+ LVAV+K + G EN++QEAK
Sbjct: 2 IEESLHAIQQRMADAMARVGR-VDTALLVAVTKNHPVSAVEEVARLGVTHVGENRVQEAK 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + K + IG LQ NKV + V +FD+I +V K + K + V
Sbjct: 61 EKQLTY-KGPQLTWHLIGHLQVNKVRQAVPMFDLIHSVDSRKLLDEIEKVAAKHDKIQDV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+QVN E K+G+ + + + + V GLMC+ P +P +P F + +
Sbjct: 120 LLQVNVAREASKTGMTVEEFPEIRDYAKTLPHVRVRGLMCMAPFFDDPQEARPIFRVANA 179
Query: 180 IARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K + LSMGMT DFE+A+ GA VR+G+ IFGER
Sbjct: 180 LFEDMKRYFEEGQIQYLSMGMTHDFEVALEEGANIVRVGTAIFGER 225
>gi|110802818|ref|YP_699137.1| hypothetical protein CPR_1822 [Clostridium perfringens SM101]
gi|110683319|gb|ABG86689.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens
SM101]
Length = 219
Score = 254 bits (650), Expect = 5e-66, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 109/231 (47%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L F +KI +V L+AVSK +++ A G F ENK+QE
Sbjct: 1 MDIKENLTKFTKKI----------PSNVQLIAVSKTRTIEEMEEAYEFGIRKFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ K DV+ IG LQ+NKV IV +I+++ K + + ++
Sbjct: 51 IIRKFDEFHK--DVEWHLIGHLQTNKVKYIVDKVHLIQSLDSIKLLKEIEKVYGRHNKIA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLS 178
IQVN G E QK GI+ + + + +NV G+M I P + +F
Sbjct: 109 NTLIQVNIGREEQKYGILEEKLDELIEAIEACNNVNVLGIMTIIPKGTEEECRKYFSKTH 168
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + K+ LSMGM+ D+E+AI G+ VRIG GIFG+R +
Sbjct: 169 KLFCELKEKKFKNIKMDILSMGMSGDYEIAIEEGSNMVRIGQGIFGKRLYK 219
>gi|320530721|ref|ZP_08031765.1| pyridoxal phosphate enzyme, YggS family [Selenomonas artemidis
F0399]
gi|320137008|gb|EFW28946.1| pyridoxal phosphate enzyme, YggS family [Selenomonas artemidis
F0399]
Length = 237
Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats.
Identities = 71/235 (30%), Positives = 110/235 (46%), Gaps = 19/235 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPK----DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+ +L+ + +I + A+R V L+AV+K + +R A+ G + EN++
Sbjct: 7 ICERLRAVRAEIAQA--RARRTHVPVEAPVELIAVTKNHPVEAMRTAIDSGVMNIGENRI 64
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QEA K L +E + IG LQ+NK V FD+I +V E A+ + K +
Sbjct: 65 QEALDKAETLERE--AKWHLIGHLQTNKAKHAVRQFDLIHSVDSEHLAAEIDKAAEKFGK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+ +QVN E KSG+ + L ++G MCI P N +P F
Sbjct: 123 VQNILVQVNLAREASKSGVYREDLDPLLRAVSGLPHLRLQGFMCIAPNYDNEEKCRPLFR 182
Query: 176 LLSEIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ E+ +E K + LSMGMT D+ +A+ GA VR+G+ IFG R T
Sbjct: 183 EMYELFQEAKEKEPPKADIRYLSMGMTHDYTVAVEEGANLVRVGTAIFGARQYHT 237
>gi|303246794|ref|ZP_07333071.1| alanine racemase domain protein [Desulfovibrio fructosovorans JJ]
gi|302491811|gb|EFL51691.1| alanine racemase domain protein [Desulfovibrio fructosovorans JJ]
Length = 229
Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats.
Identities = 75/224 (33%), Positives = 105/224 (46%), Gaps = 11/224 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+L K +I ++ R +V+LVAVSK+ D ++ +CGQ IF E+ +QEA
Sbjct: 6 AKRLAHVKGRIADACAACGRDPAAVTLVAVSKLHDVAEVAAMAACGQRIFGESYIQEALP 65
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K + FIG LQ NK V+ F +I TV A +L + +
Sbjct: 66 KMEAAPA--GLAWHFIGHLQRNKAKLAVARFALIHTVDNADLAGILQKRTAEAGLTQDIC 123
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVN E QKSG+ P + L + GLM IPP +P +P F L +
Sbjct: 124 LQVNVAGESQKSGVDPRRLPKLAEAVAAMGALRLVGLMVIPPVFDDPEGARPVFARLRTL 183
Query: 181 ARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E L LSMGM+ D E A+ GAT VR+G+ +FG R
Sbjct: 184 RDELASRLALPLPVLSMGMSGDLEAAVMEGATHVRVGTDLFGPR 227
>gi|291167100|gb|EFE29146.1| pyridoxal phosphate enzyme, YggS family [Filifactor alocis ATCC
35896]
Length = 230
Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats.
Identities = 71/232 (30%), Positives = 111/232 (47%), Gaps = 15/232 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ + IE + + K V+LVAV+K +D ++ L G F ENK+QE
Sbjct: 1 MDVKDNLKSVQASIEQARQNSC-EKQEVTLVAVTKTIDVGPMKEVLKEGVSCFGENKVQE 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ V+ IG+LQSNKV I+ ++I ++ R A + + +
Sbjct: 60 ILSKYEKFPDT--VKWHLIGTLQSNKVKYIIDKVEMIHSLDRISLAKEIDRRAKEIGVVM 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGN---PKPHFYL 176
IQVN E K G+ + F+ Q + V GLM + P + + +P+F
Sbjct: 118 KCLIQVNISQEESKHGLDKAEALKFIEEVAQNFSHIQVLGLMGMAPFVEDAEEARPYFRQ 177
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + E K + LSMGMT D+ +AI G+ VR+G+GIFG+R
Sbjct: 178 LKGLFEEAKNLNLGTGQMKYLSMGMTNDYTVAIEEGSNMVRVGTGIFGKRNY 229
>gi|114769843|ref|ZP_01447453.1| alanine racemase domain protein [alpha proteobacterium HTCC2255]
gi|114549548|gb|EAU52430.1| alanine racemase domain protein [alpha proteobacterium HTCC2255]
Length = 217
Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats.
Identities = 98/216 (45%), Positives = 127/216 (58%), Gaps = 2/216 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K +IEN+ A K S L+AVSK+ + K+ L+ G +F ENK+QE+ KW
Sbjct: 3 LHSIKFRIENAEKSAGVIKGSTQLLAVSKVQPNSKVLNVLNQGHNLFGENKVQESFGKWP 62
Query: 67 PLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+ D ++ IG LQSNKV + V LF+ I T+ R K A LS E+ Q + ++IQ
Sbjct: 63 MFRESFPDAEVHLIGPLQSNKVKQAVELFNAIHTLDRLKLAQKLSNEIQSQGKAPDMFIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
+N+G E QKSGI+P+ F+ CR L ++GLM IPP P HF LL IA
Sbjct: 123 INSGEEDQKSGIIPSDADKFIADCRSLD-LPIKGLMVIPPVNDEPSLHFGLLRAIAHRNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L LSMGM+ DFE AIA GAT VR+GS IFGER
Sbjct: 182 LAGLSMGMSNDFESAIAMGATHVRVGSAIFGERDYS 217
>gi|16078602|ref|NP_389421.1| hypothetical protein BSU15380 [Bacillus subtilis subsp. subtilis
str. 168]
gi|221309412|ref|ZP_03591259.1| hypothetical protein Bsubs1_08506 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313737|ref|ZP_03595542.1| hypothetical protein BsubsN3_08442 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318661|ref|ZP_03599955.1| hypothetical protein BsubsJ_08376 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322934|ref|ZP_03604228.1| hypothetical protein BsubsS_08482 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|3183467|sp|O31727|YLME_BACSU RecName: Full=UPF0001 protein ylmE
gi|2633911|emb|CAB13412.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. 168]
Length = 230
Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats.
Identities = 63/227 (27%), Positives = 106/227 (46%), Gaps = 16/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ ++I + + R D V+++AV+K V ++ + A+ G EN+ E
Sbjct: 1 MRVVDNLRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ + FIGSLQS K +V+ I ++ R A + +
Sbjct: 61 LLRKQELMKGNP--EWHFIGSLQSRKAKSVVNSVSYIHSLDRLSLAKEIEKRAEG---TV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVNT E K G+ + F+ + V GLM + P + + F L
Sbjct: 116 RCFVQVNTSLEPSKHGMKKEEVIPFIQELSGFEHILVAGLMTMAPLTDDQDQIRSCFRSL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
E+ + + T+LSMGM+ DFE+AI GAT +RIGS + G
Sbjct: 176 RELRDQVQKLNQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVG 222
>gi|311747401|ref|ZP_07721186.1| pyridoxal phosphate enzyme, YggS family [Algoriphagus sp. PR1]
gi|126574685|gb|EAZ79072.1| pyridoxal phosphate enzyme, YggS family [Algoriphagus sp. PR1]
Length = 225
Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats.
Identities = 63/235 (26%), Positives = 101/235 (42%), Gaps = 27/235 (11%)
Query: 1 MSLGNKLQVFKQK-IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M + L+ K+ + + + LVAVSK ++ A + G F ENK+Q
Sbjct: 1 MDIKANLENVKKTFVNPNCL----------LVAVSKTKPIADLKAAYATGIRDFGENKVQ 50
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E + K L + D++ IG LQ NKV I +I V K ++ + K R
Sbjct: 51 ELQDKHPELPE--DIRWHMIGHLQRNKVKYIAPYVYLIHGVDSFKLLKEINKQGAKIDRV 108
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
+ V +Q++ E K G + + + + ++GLM + + + F
Sbjct: 109 ISVLLQIHIAEEESKFGFDKAELESMFKDDHFKALTHVKIKGLMGMATFTQDQNQVRKEF 168
Query: 175 YLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + E K+ +LSMGM+ D+ +A G+T VRIGS IFG R
Sbjct: 169 KSLKGLFEELKQQELPDFVKMEELSMGMSGDYLIAQEEGSTMVRIGSAIFGARDY 223
>gi|312129821|ref|YP_003997161.1| alanine racemase domain protein [Leadbetterella byssophila DSM
17132]
gi|311906367|gb|ADQ16808.1| alanine racemase domain protein [Leadbetterella byssophila DSM
17132]
Length = 244
Score = 254 bits (650), Expect = 6e-66, Method: Composition-based stats.
Identities = 72/228 (31%), Positives = 119/228 (52%), Gaps = 13/228 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + V +++I N+ + R D V L+ +K V +++I++AL G + AENK+QE K
Sbjct: 5 ILRNMAVIQERINNACKESNRNPDEVKLLLATKTVPAERIKIALQAGHTLIAENKVQELK 64
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ L+ FIG LQ+NK+ E++ I+++ R A L + + + +
Sbjct: 65 EKYEALKGVSHTN-HFIGHLQTNKIKEVLKYDVSCIQSLDRIDLAEKLQQRLEYEDKTID 123
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
V +QVNT E K G+ P+ V + +L ++GLM I + F LL
Sbjct: 124 VLVQVNTSNEESKFGVHPDNAIALVQQIARLDRLKIKGLMTIGLFSAETEKVRQCFKLLK 183
Query: 179 EIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I +E ++ +LSMGM+ D E AI GAT +R+G+ IFG+R
Sbjct: 184 NIQQEIIALNIPDIQMKELSMGMSGDLETAIEEGATIIRVGTAIFGQR 231
>gi|86131768|ref|ZP_01050365.1| alanine racemase domain-containing protein [Dokdonia donghaensis
MED134]
gi|85817590|gb|EAQ38764.1| alanine racemase domain-containing protein [Dokdonia donghaensis
MED134]
Length = 215
Score = 254 bits (650), Expect = 7e-66, Method: Composition-based stats.
Identities = 70/227 (30%), Positives = 104/227 (45%), Gaps = 21/227 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + F++ I V+LVAVSK + A GQ IF ENK+QE
Sbjct: 1 MSIAENILRFRESI----------PPHVTLVAVSKTKPVADLMEAYETGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW + K D+Q IG +Q+NKV + ++ V R K ++ + + R +
Sbjct: 51 MTEKWEEMPK--DIQWHMIGHVQTNKVKFMAPFVSLVHAVDRIKLLKEINKQALANDRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPK---PHFY 175
V IQV E K G+ + +NV GLM + + + F
Sbjct: 109 DVLIQVKIAREDSKFGMAVDDVISLFQSKELDNYPNVNVVGLMGMATFTDDQRQVQAEFE 168
Query: 176 LLSEIA----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL + LT LS GM+ D++LAI +G+T +R+GS IFG R
Sbjct: 169 LLEGLFLRFRESANLTILSSGMSGDYKLAIDNGSTMIRVGSSIFGAR 215
>gi|302391655|ref|YP_003827475.1| alanine racemase domain protein [Acetohalobium arabaticum DSM 5501]
gi|302203732|gb|ADL12410.1| alanine racemase domain protein [Acetohalobium arabaticum DSM 5501]
Length = 232
Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats.
Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 16/234 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + L+ +++I +A A R D + LVAV+K ++I+ + V E+++Q
Sbjct: 1 MSEIKDNLKQVQKRIAAAAKRAGRDSDEIKLVAVTKTRGIEEIKEVIEADVVDLGESRVQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIKQS 117
E + K+ + ++ + IG LQ NKV I + ++I ++ + A ++
Sbjct: 61 ELRDKYDNISQK--INWHMIGHLQRNKVKYIMRMERCNLIHSMDSMRLAKKINKRAGMAD 118
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
R + V +Q+N + K G+ P +T D++ + L V+GLM + P + + +P+F
Sbjct: 119 RVMNVLVQINVAGDENKFGLEPEETIDYLRKVAEFENLQVKGLMTMVPYVDDTEQVRPYF 178
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L E+ E K + +LSMG+T DFE+AI GAT VR+GS IFG R
Sbjct: 179 RELKELFEEVKRAEIPNIEMQELSMGITNDFEVAIEEGATIVRVGSAIFGPREY 232
>gi|78189315|ref|YP_379653.1| hypothetical protein Cag_1350 [Chlorobium chlorochromatii CaD3]
gi|78171514|gb|ABB28610.1| Protein of unknown function UPF0001 [Chlorobium chlorochromatii
CaD3]
Length = 229
Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 112/228 (49%), Gaps = 12/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L ++ + A R +SV L+AVSK ++ +R A GQ+ F E+ +QE
Sbjct: 3 SIASNLAAIHAQVAAACKQAGRKPESVRLIAVSKTKSAELVREAFDAGQLEFGESYMQEF 62
Query: 62 KKKWI--PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K+ L+ +Q FIG LQSNKV +V +I + + TA LS ++Q+
Sbjct: 63 LEKYESRALQGCP-IQWHFIGHLQSNKVRSLVGKVSLIHGIDKLSTAEELSKRAVQQNLT 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM-GNPKPHFYLLS 178
+ ++VNT E K G+ P+ + + GLM I + F L
Sbjct: 122 VDYLLEVNTSGEASKYGMAPHTVLSEASAFFALPNVRLRGLMTIATYEREAARREFQELR 181
Query: 179 EIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + + T+LSMGM+ DFE AI GAT +R+GS IFG R
Sbjct: 182 ELLEQLQAIAPDPTLVTELSMGMSGDFEEAIQEGATMIRVGSAIFGWR 229
>gi|310642975|ref|YP_003947733.1| alanine racemase domain protein [Paenibacillus polymyxa SC2]
gi|309247925|gb|ADO57492.1| Alanine racemase domain protein [Paenibacillus polymyxa SC2]
Length = 233
Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats.
Identities = 69/227 (30%), Positives = 110/227 (48%), Gaps = 13/227 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL +++ +IE + + R +D V+++AV+K V + + L EN+ Q+
Sbjct: 1 MSLEERIKEVNARIEAACARSGRSRDEVNVIAVTKYVSAAAMASVLDNDLEHVGENRWQD 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A KW L FIG LQ+NKV +++ F I ++ R A L + +
Sbjct: 61 AADKWSKLGDRG--TWHFIGHLQTNKVKDVIGKFKFIHSLDRLSLAQELDKKAAALGLRV 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN EI K G+ P F+ R+ ++V GLM + P +P +P F L
Sbjct: 119 KAFVQVNISGEISKYGLSPETVAPFLEQIRELEHVDVIGLMTMAPHEEDPEHTRPVFRGL 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
E+ + LSMGM+ DFE+A+ GAT +R+GS + G
Sbjct: 179 RELRDRLNGQALTREPIVHLSMGMSNDFEVAVEEGATWLRLGSVLVG 225
>gi|310659185|ref|YP_003936906.1| hypothetical protein CLOST_1881 [Clostridium sticklandii DSM 519]
gi|308825963|emb|CBH22001.1| putative enzyme [Clostridium sticklandii]
Length = 231
Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats.
Identities = 72/233 (30%), Positives = 114/233 (48%), Gaps = 16/233 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + ++ ++I+ + +R D V+L+AVSK V ++I AL G ENK+Q
Sbjct: 1 MSQIKTNIEFVNEEIKKTLNKCERN-DDVTLIAVSKTVGVEQINEALDSGIENLGENKVQ 59
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E +KK + K+ IG+LQ+NKV I+ D+I ++ R A + +
Sbjct: 60 EVEKKHPNVSKK--AVWHLIGTLQTNKVKYIIKTIDLIHSLDRMPLAKEIDKRAKENDLV 117
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNP---KPHFY 175
+ IQVN E K G++ FV + + GLM + P P +P+F
Sbjct: 118 MDCLIQVNISLEDSKHGLLAEDVMAFVKEVSLNYNNIRIVGLMGMAPFEAEPEQTRPYFK 177
Query: 176 LLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + E ++ LSMGMT D+++AI G+ +R+G+GIFGER
Sbjct: 178 KLKSLFDELSSLALENVEMKYLSMGMTNDYKIAIEEGSNMIRVGTGIFGERNY 230
>gi|167771414|ref|ZP_02443467.1| hypothetical protein ANACOL_02780 [Anaerotruncus colihominis DSM
17241]
gi|167666054|gb|EDS10184.1| hypothetical protein ANACOL_02780 [Anaerotruncus colihominis DSM
17241]
Length = 242
Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats.
Identities = 67/231 (29%), Positives = 116/231 (50%), Gaps = 12/231 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+S+ ++ I + L R V L+AV+K V+++++ A+ G + EN+ QE
Sbjct: 9 LSIAQSVEQILDNIAKTCALCGRDASDVQLMAVTKTVEAQRVNEAIHAGVRLLGENRAQE 68
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K+ V + FIG LQ+NKV +IV +I+++ A + + K + +
Sbjct: 69 LLAKYDDYEKD-GVDIHFIGHLQTNKVRQIVDKVTMIQSLDSVALAQEIERQCEKHDKKM 127
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYLL 177
++VN G E+ KSG+ P++ DF+ ++ V GLM IPP G + +F +
Sbjct: 128 NCLVEVNIGSELSKSGVAPDRLSDFLGELSGFGRICVRGLMAIPPVSGTDAEKERYFSGM 187
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + LSMGM+ D+ LAI G+ VR+G+ +FG R
Sbjct: 188 HKLFVDIRDKKLDNINMDFLSMGMSDDYLLAIKHGSNLVRLGTRLFGHRDY 238
>gi|332825856|ref|XP_001169823.2| PREDICTED: proline synthase co-transcribed bacterial homolog
protein isoform 1 [Pan troglodytes]
Length = 310
Score = 254 bits (649), Expect = 7e-66, Method: Composition-based stats.
Identities = 79/245 (32%), Positives = 119/245 (48%), Gaps = 26/245 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 46 LGVGCALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGYGQRTFGEN 103
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSL 111
+QE +K L +++ FIG LQ V+++ V ++ETV K A ++
Sbjct: 104 YVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKLADKVNS 163
Query: 112 EMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMG 168
K+ L V +Q+NT E K G+ P++T V + L GLM I
Sbjct: 164 SWQKKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGH 223
Query: 169 N----PKPHFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ P P F LL + E KL +LSMGM+ DF+ A+ G+T+VRIGS IFG
Sbjct: 224 DLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFG 283
Query: 217 ERPCQ 221
ER
Sbjct: 284 ERDYS 288
>gi|330813401|ref|YP_004357640.1| YggS-like protein [Candidatus Pelagibacter sp. IMCC9063]
gi|327486496|gb|AEA80901.1| YggS-like protein [Candidatus Pelagibacter sp. IMCC9063]
Length = 216
Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats.
Identities = 86/218 (39%), Positives = 119/218 (54%), Gaps = 8/218 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + ++ NS + + +++AVSK I+ + G +F ENK+QEA
Sbjct: 3 NIVQNFLNIRDELTNSNL-------NPTVIAVSKTFPLGHIKPLIDHGHRVFGENKVQEA 55
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+KW L+ ++L IG LQSNK E V LFD I +V K AS LS K S
Sbjct: 56 KQKWSELKDSLKGLELHLIGGLQSNKSKEAVQLFDYIHSVDSMKLASELSKAEAKLSVKR 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQVN G E QKSG+ + ++ + C + LNV GLMCIPP +P PHF L+E+
Sbjct: 116 KYFIQVNVGMEEQKSGVSKKEVENLLKYCVNEKNLNVIGLMCIPPFDQDPTPHFNHLNEL 175
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +SMGM+ D+ A G+T VRIGS IFG R
Sbjct: 176 NNHLGLKFISMGMSDDYMSAGKCGSTHVRIGSKIFGSR 213
>gi|222109633|ref|YP_002551897.1| alanine racemase domain-containing protein [Acidovorax ebreus TPSY]
gi|221729077|gb|ACM31897.1| alanine racemase domain protein [Acidovorax ebreus TPSY]
Length = 238
Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats.
Identities = 74/232 (31%), Positives = 110/232 (47%), Gaps = 15/232 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + LQ +++I + A RP D+V+L+AVSK + +R A GQ F EN +QEA
Sbjct: 3 TIASNLQNVRERIARACAAAGRPPDAVALLAVSKTFGPEAVRDAALAGQRRFGENYIQEA 62
Query: 62 KKKWI---PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K L ++ IG +QSNK + FD + TV R KTA LS +
Sbjct: 63 VEKMALVAALGLPQALEWHCIGPVQSNKTRLVAQHFDWVHTVDRPKTAQRLSDQRPDNLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL- 177
L V IQVN K+G+ + +L + G+M IP + +L
Sbjct: 123 ALQVCIQVNVDGGATKAGVPAEEALALAQAVAALPRLTLRGVMSIPDPAPDEAAQLAVLL 182
Query: 178 --SEIARECKL---------TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + LS+GMT D E A+ +G+T VR+GSGIFG R
Sbjct: 183 RVRQVFDTLRAQGGPGFEAVDTLSLGMTGDLEAAVRAGSTMVRVGSGIFGAR 234
>gi|121997736|ref|YP_001002523.1| alanine racemase domain-containing protein [Halorhodospira
halophila SL1]
gi|121589141|gb|ABM61721.1| alanine racemase domain protein [Halorhodospira halophila SL1]
Length = 228
Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats.
Identities = 81/228 (35%), Positives = 111/228 (48%), Gaps = 11/228 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + +L ++++ + RP SV ++AVSK + +R A + GQ F EN LQ
Sbjct: 1 MSEIATRLAAVQERVRAAEADCGRPAGSVQILAVSKRHSAAAMRAAYTAGQHAFGENYLQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA +K L ++ FIG +QSNK E+ FD + TV R K A LS +
Sbjct: 61 EATEKQAELAD-LALEWHFIGGVQSNKTREVAERFDWVHTVDRAKIARRLSEQRPPDHPP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V +QVN E QK+G +P+ D + QL + GLM +P L+
Sbjct: 120 LNVCLQVNISEEPQKAGCLPDDVGDLAAAVDRLPQLRLRGLMALPAPAEGFDAQRRPLAR 179
Query: 180 IAR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L LSMGM+ D E AIA GAT VRIG+ IFG R
Sbjct: 180 LRELQQALREGGHHGLDTLSMGMSADLEAAIAEGATIVRIGTAIFGPR 227
>gi|157692218|ref|YP_001486680.1| hypothetical protein BPUM_1437 [Bacillus pumilus SAFR-032]
gi|157680976|gb|ABV62120.1| hypothetical protein BPUM_1437 [Bacillus pumilus SAFR-032]
Length = 229
Score = 254 bits (649), Expect = 8e-66, Method: Composition-based stats.
Identities = 68/227 (29%), Positives = 108/227 (47%), Gaps = 15/227 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L+ ++I + A R D VS+VAV+K V ++ + A G + F EN+ Q
Sbjct: 1 MNVRENLRQINEQINEACKRAGRNPDDVSVVAVTKYVSIERAQEAKEAGILHFGENRDQG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + E + FIGSLQ+ KV ++ D + ++ R A+ + + +
Sbjct: 61 LLEKQASITDE-SINWHFIGSLQTRKVKSVIQTIDYLHSLDRISLANEIEKRV---DHTV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
++QVNT E K G+ FV ++ + GLM + P + + F L
Sbjct: 117 RCFVQVNTSLEESKHGLQSEDVIPFVKQLADFKKIEIAGLMTMAPFTDDHTVIRNCFKTL 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ +E K LSMGM+ DFE+AI GAT VRIGS + G
Sbjct: 177 KNLQKEVKHLNQVNAPCQHLSMGMSNDFEIAIEEGATFVRIGSSLVG 223
>gi|295691575|ref|YP_003595268.1| alanine racemase domain-containing protein [Caulobacter segnis ATCC
21756]
gi|295433478|gb|ADG12650.1| alanine racemase domain protein [Caulobacter segnis ATCC 21756]
Length = 217
Score = 254 bits (649), Expect = 9e-66, Method: Composition-based stats.
Identities = 104/218 (47%), Positives = 135/218 (61%), Gaps = 2/218 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + +I + A R SV+LVAVSK + I L GQ +F EN++QEA
Sbjct: 1 MSQALADIQSRIAAAEARAGRAPGSVTLVAVSKTQPWEHIAPVLDAGQKVFGENRVQEAM 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
++W R+ ++LR IG LQ+NK E V+ FDVIETV REK A +L+ E+ + R +
Sbjct: 61 ERWGQRRE--GLELRLIGPLQTNKAREAVAFFDVIETVDREKLARVLAEEIQRSGRAPRL 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
Y+QVNTG E QK+GI P + F+ CRQ Y L VEGLMCIPP +P PHF L IA
Sbjct: 119 YVQVNTGEEPQKAGIAPGEADTFIAACRQTYGLAVEGLMCIPPFDTDPAPHFAQLRAIAE 178
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ KLSMGM+ DFE+AI GATSVR+GS +FG R
Sbjct: 179 RNGVEKLSMGMSDDFEIAIVEGATSVRVGSALFGSRNY 216
>gi|297844046|ref|XP_002889904.1| alanine racemase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297335746|gb|EFH66163.1| alanine racemase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 242
Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats.
Identities = 83/232 (35%), Positives = 114/232 (49%), Gaps = 18/232 (7%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ Q++ +A A R D + +VAVSK IR G F EN +QE +K
Sbjct: 10 AALRSVVQRVNQAAEKAGRVSDQIRVVAVSKTKPVSLIRQVYDAGHRSFGENYVQEIIEK 69
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FL 120
L D++ FIG+LQSNKV + V ++E+V EK A++L + R L
Sbjct: 70 SPQLPD--DIEWHFIGNLQSNKVKPLLSGVPNLVMVESVDDEKIANMLDRVVGNIGRKPL 127
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNPKPH-FYLLS 178
V +QVNT E K G+ P+ ++ L GLM I A P F LL+
Sbjct: 128 KVLVQVNTSGEESKFGVEPSGCVGLAKHVKEACSNLEFSGLMTIGMADYTSTPENFKLLA 187
Query: 179 ----EIARECKLT----KLSMGMTRDFELA--IASGATSVRIGSGIFGERPC 220
E+ +E + +LSMGM+ DFELA I G+T+VRIGS IFG R
Sbjct: 188 KCRSEVCKELGIPEEQCELSMGMSGDFELALQIELGSTNVRIGSTIFGAREY 239
>gi|227495939|ref|ZP_03926250.1| alanine racemase domain protein [Actinomyces urogenitalis DSM
15434]
gi|226834527|gb|EEH66910.1| alanine racemase domain protein [Actinomyces urogenitalis DSM
15434]
Length = 251
Score = 253 bits (648), Expect = 9e-66, Method: Composition-based stats.
Identities = 72/227 (31%), Positives = 106/227 (46%), Gaps = 10/227 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + +I+ +A A R V L+ V+K V ++R A + G ENK+QEAK
Sbjct: 17 ISANLAAIRTRIDAAAAAAGRSPSEVRLLPVTKTVPEDRLRAAFAAGVTEMGENKVQEAK 76
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + + IG LQ+NK ++V+ + + A L + R L V
Sbjct: 77 RKSTEMAD-LGIHWALIGHLQTNKAKDVVAFAHEFQALDSLHVAEALDRRLQAAGRSLDV 135
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSE 179
Y+QVN+ E K G+ P+ F+ L V GLM + + + F L+
Sbjct: 136 YVQVNSSGEESKFGLEPDAVTAFLAALPVYSSLRVRGLMTLAAHTDDRERVRECFRLMRR 195
Query: 180 IARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGM+ DFELAIA GAT VR+G+ IFG RP
Sbjct: 196 LRDAGREAGTVGDGLLSMGMSGDFELAIAEGATCVRVGTAIFGARPT 242
>gi|89070621|ref|ZP_01157901.1| alanine racemase domain protein [Oceanicola granulosus HTCC2516]
gi|89043768|gb|EAR49970.1| alanine racemase domain protein [Oceanicola granulosus HTCC2516]
Length = 216
Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats.
Identities = 87/199 (43%), Positives = 119/199 (59%), Gaps = 2/199 (1%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIG 80
RP +V L+AVSK+ ++ L G +F EN++QEA KW R +++ V + +G
Sbjct: 18 GRPAGAVELIAVSKLQPESRVADVLEAGHRLFGENRVQEAAGKWPDFRAQFEGVAVHLLG 77
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
LQ+NK + + LF+ I ++ R K A L+ + R +++QVNTG E QK+GI+P
Sbjct: 78 PLQTNKARQALELFEAIHSLDRPKLAGTLARLAQETGRCPDLFVQVNTGEEPQKAGILPG 137
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELA 200
+ F+ CR L V GLMCIPP P HF LL++IA L LSMGM+ DFE A
Sbjct: 138 EADGFIAECRGMD-LPVRGLMCIPPVDEEPALHFALLAKIAARNGLEGLSMGMSGDFERA 196
Query: 201 IASGATSVRIGSGIFGERP 219
IA GAT VR+GS IFG RP
Sbjct: 197 IAQGATHVRVGSAIFGARP 215
>gi|16930823|ref|NP_473398.1| proline synthase co-transcribed bacterial homolog protein isoform a
[Mus musculus]
gi|12230502|sp|Q9Z2Y8|PROSC_MOUSE RecName: Full=Proline synthase co-transcribed bacterial homolog
protein
gi|4126980|dbj|BAA36843.1| Proline synthetase associated [Mus musculus]
gi|26328127|dbj|BAC27804.1| unnamed protein product [Mus musculus]
gi|148700851|gb|EDL32798.1| proline synthetase co-transcribed [Mus musculus]
Length = 274
Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats.
Identities = 78/245 (31%), Positives = 119/245 (48%), Gaps = 26/245 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ S +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 11 LGVGFALRAVNERVQQS--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 68
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSL 111
+QE +K L +++ FIG LQ V+++ V ++ETV K A ++
Sbjct: 69 YVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETVDSVKLADKVNS 128
Query: 112 EMIKQSR--FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMG 168
K+ L V +Q+NT E K G++P++T V + L GLM I
Sbjct: 129 SWQKKGPTEPLKVMVQINTSGEDSKHGLLPSETIAVVEHIKASCPSLEFVGLMTIGSFGH 188
Query: 169 N----PKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ P P F L E+ + + +LSMGM+ DF+ AI G+T+VRIGS IFG
Sbjct: 189 DLSQGPNPDFQRLLTLRRELCEKLGIPVEQVELSMGMSMDFQHAIEVGSTNVRIGSTIFG 248
Query: 217 ERPCQ 221
ER
Sbjct: 249 ERDYS 253
>gi|254452266|ref|ZP_05065703.1| conserved hypothetical protein TIGR00044 [Octadecabacter
antarcticus 238]
gi|198266672|gb|EDY90942.1| conserved hypothetical protein TIGR00044 [Octadecabacter
antarcticus 238]
Length = 217
Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats.
Identities = 88/213 (41%), Positives = 123/213 (57%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L K++I + A R S L+AVSK+ +++++ L G I+ EN++QEA KW
Sbjct: 3 LLEIKKRISAAEAKAGRSDGSTKLIAVSKVQPNERVQAILEQGHRIYGENRVQEAADKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+++D ++L IG LQ+NK + L I T+ R K A + + + +YIQ
Sbjct: 63 AFREQFDGIELHIIGPLQTNKARAAMELAQAIHTLDRIKLAHMFARLAQEMGACPDLYIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P F+ L V GLMCIPP +P PHF LL +IA
Sbjct: 123 VNTGAEPQKAGVLPASADAFIAESVALD-LPVAGLMCIPPVNEDPSPHFKLLGDIAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE A+A GAT VR+GS IFG+R
Sbjct: 182 LNGLSMGMSGDFETAVAHGATHVRVGSAIFGDR 214
>gi|301763705|ref|XP_002917283.1| PREDICTED: LOW QUALITY PROTEIN: proline synthase co-transcribed
bacterial homolog protein-like [Ailuropoda melanoleuca]
Length = 305
Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats.
Identities = 78/245 (31%), Positives = 119/245 (48%), Gaps = 26/245 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A S GQ F EN
Sbjct: 41 LGIGFALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQRTFGEN 98
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSL 111
+QE +K L +++ FIG LQ V+++ V ++ETV K A ++
Sbjct: 99 YVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLIAVPNLFMLETVDSVKLADKVNS 158
Query: 112 EMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMG 168
K+ L V +QVNT E K G++P++T V + L GLM I
Sbjct: 159 SWQKKDSPEKLKVMVQVNTSGEESKHGLLPSETVAVVEHINTKCPSLEFVGLMTIGSFGH 218
Query: 169 N----PKPHFYLLSEIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ P P F +L + E +LSMGM+ DF+ AI G+T+VR+GS IFG
Sbjct: 219 DLSQGPNPDFQVLLSLREELCAKLNVPTDQVELSMGMSADFQHAIEVGSTNVRVGSTIFG 278
Query: 217 ERPCQ 221
ER
Sbjct: 279 ERDYS 283
>gi|189460455|ref|ZP_03009240.1| hypothetical protein BACCOP_01096 [Bacteroides coprocola DSM 17136]
gi|189432841|gb|EDV01826.1| hypothetical protein BACCOP_01096 [Bacteroides coprocola DSM 17136]
Length = 222
Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ ++ +V LVAVSK ++ I A S GQ IF E+K QE
Sbjct: 1 MDIQANLKEVIAEL----------PTNVRLVAVSKFHPAEAIEAAYSAGQRIFGESKEQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L K D++ FIG LQ+NKV I +I K ++ + K R +
Sbjct: 51 LSGKHEQLPK--DIEWHFIGHLQTNKVKYIAPYIAMIHAADSYKLLVEINKQAAKHERTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKP---HFY 175
P ++++ E K G + ++ + + + + G+M + + F+
Sbjct: 109 PCLLEIHIAQEESKYGFTFDSCREMLRTGEWKNLNNICIAGVMGMATNTEDETEIANEFH 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L E K ++SMGM+ D+ +A+ G+T VR+GS IFG+R
Sbjct: 169 SLKVFFDELKQEFFSDRPEFKEISMGMSHDYPIAVKEGSTMVRVGSKIFGDRNY 222
>gi|225460901|ref|XP_002278892.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|297737470|emb|CBI26671.3| unnamed protein product [Vitis vinifera]
Length = 245
Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats.
Identities = 78/222 (35%), Positives = 110/222 (49%), Gaps = 16/222 (7%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
++ +A + R D V +VAVSK IR G F EN +QE +K L +
Sbjct: 20 RVRQAAERSGRRSDQVRVVAVSKTKPVSLIRQVYDAGHRCFGENYVQEINEKAPQLPE-- 77
Query: 73 DVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIK-QSRFLPVYIQVNT 128
D++ FIG LQSNKV + V ++E V EK A+ L + + + L V +QVNT
Sbjct: 78 DIEWHFIGHLQSNKVKPLLAAVPNLAMVEGVDNEKIANQLDRVVSGIRRKPLKVLVQVNT 137
Query: 129 GYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCI--PPAMGNPKPHFYLLS---EIAR 182
E+ KSG+ P+ + + L GLM I P P+ LL+ E+ +
Sbjct: 138 SGEVSKSGVEPSGCVELAKHVKLGCPNLEFSGLMTIGMPDYSSTPENFRRLLNCRIEVCK 197
Query: 183 ECKL----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ +LSMGM+ DFE AI G+T+VRIGS IFG R
Sbjct: 198 ALGMAEEQCELSMGMSGDFEQAIEMGSTNVRIGSTIFGPREY 239
>gi|187932582|ref|YP_001886626.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum B
str. Eklund 17B]
gi|187720735|gb|ACD21956.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum B
str. Eklund 17B]
Length = 224
Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats.
Identities = 79/232 (34%), Positives = 110/232 (47%), Gaps = 22/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ K +I +V L+AVSK + ++ A G F ENK+QE
Sbjct: 1 MSIKENIEKLKLEI----------PKNVELLAVSKTKPIEDLKEAYEAGIRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + L K D++ IG LQ+NKV +V +I ++S K + + K +
Sbjct: 51 LVSKEVSLPK--DIRWHLIGKLQTNKVKYLVDKVYLIHSLSSIKLLNEIERVFEKNNMVA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG--NPKPHFYLLS 178
V IQ+N G E KSGI+ + D + + +G+M I P N K +F
Sbjct: 109 NVLIQINIGREESKSGILKEELPDIIEAIETCDHVLAKGIMVIIPKGDEKNNKKYFKETK 168
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
EI R K+ LSMGMT DF AI G+T VRIG GIFGER T
Sbjct: 169 EIFDYLKVREYRNIKMEVLSMGMTHDFNEAIEEGSTLVRIGQGIFGERNYST 220
>gi|291484089|dbj|BAI85164.1| hypothetical protein BSNT_02539 [Bacillus subtilis subsp. natto
BEST195]
Length = 230
Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats.
Identities = 63/227 (27%), Positives = 106/227 (46%), Gaps = 16/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ ++I + + R D V+++AV+K V ++ + A+ G EN+ E
Sbjct: 1 MRVVDNLRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ + FIGSLQS K +V+ I ++ R A + +
Sbjct: 61 LLRKQELMKGNP--EWHFIGSLQSRKAKSVVNAVSYIHSLDRLSLAKEIEKRAEG---TV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVNT E K G+ + F+ + V GLM + P + + F L
Sbjct: 116 RCFVQVNTSLEPSKHGMKKEEVIPFIQELSGFEHILVAGLMTMAPLTDDQDQIRSCFRSL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
E+ + + T+LSMGM+ DFE+AI GAT +RIGS + G
Sbjct: 176 RELRDQVQKLNQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVG 222
>gi|147861921|emb|CAN80917.1| hypothetical protein VITISV_024616 [Vitis vinifera]
Length = 245
Score = 253 bits (648), Expect = 1e-65, Method: Composition-based stats.
Identities = 78/222 (35%), Positives = 110/222 (49%), Gaps = 16/222 (7%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
++ +A + R D V +VAVSK IR G F EN +QE +K L +
Sbjct: 20 RVRQAAERSGRRSDQVRVVAVSKTKPVSLIRQVYDAGHRCFGENYVQEINEKAPQLPE-- 77
Query: 73 DVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIK-QSRFLPVYIQVNT 128
D++ FIG LQSNKV + V ++E V EK A+ L + + + L V +QVNT
Sbjct: 78 DIEWHFIGHLQSNKVKPLLAAVPNLAMVEGVDNEKIANQLDRVVSGIRRKPLKVLVQVNT 137
Query: 129 GYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCI--PPAMGNPKPHFYLLS---EIAR 182
E+ KSG+ P+ + + L GLM I P P+ LL+ E+ +
Sbjct: 138 SGEVSKSGVEPSGCVELAKHVKLGCPNLEFSGLMTIGMPDYSSTPENFRRLLNCRIEVCK 197
Query: 183 ECKL----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ +LSMGM+ DFE AI G+T+VRIGS IFG R
Sbjct: 198 ALGMAEEQCELSMGMSGDFEQAIEMGSTNVRIGSTIFGPREY 239
>gi|212696214|ref|ZP_03304342.1| hypothetical protein ANHYDRO_00750 [Anaerococcus hydrogenalis DSM
7454]
gi|212676843|gb|EEB36450.1| hypothetical protein ANHYDRO_00750 [Anaerococcus hydrogenalis DSM
7454]
Length = 224
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 65/233 (27%), Positives = 105/233 (45%), Gaps = 22/233 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + + K+ +++ L+AV+K KI + G F ENK+QE
Sbjct: 1 MSIKDNIDNLKKDMKDY---------DAMLLAVTKTHGVDKIMEVYNYGLRDFGENKVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L D+ IG LQ+NKV++IV +I +V K ++ K S
Sbjct: 52 LLDKKDKLPD--DINWHLIGHLQTNKVNKIVGEVCLIHSVDSLKILKKINNRAKKLSIVQ 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
+Q+N E KSG +D + ++ + + GLM + P + K F L
Sbjct: 110 DCLLQINISKEESKSGFYEEDIEDIINQAKELENVKIRGLMTMAPNTEDVSVIKSCFKGL 169
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+I ++ LSMGMT D+++A+ GA +R+GS IFG+R +
Sbjct: 170 KKIFDNLSNLSYNNIEMEYLSMGMTHDYKIALEEGANIIRVGSKIFGKRMYKN 222
>gi|284036036|ref|YP_003385966.1| alanine racemase domain protein [Spirosoma linguale DSM 74]
gi|283815329|gb|ADB37167.1| alanine racemase domain protein [Spirosoma linguale DSM 74]
Length = 219
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 15/207 (7%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
D L+AV+K + +R A G F ENK+QE +K L DVQ IG LQ+
Sbjct: 14 HDKAKLIAVTKTKPVELLREAYEAGCRRFGENKVQEMAEKQPQLPD--DVQWHLIGHLQT 71
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV I +I +V K ++ + K +R + +Q+ E K G+ + +
Sbjct: 72 NKVKYIAPFVALIHSVDSLKLLQEINKQAAKSNRVIDCLLQIYIADEETKFGLSAEEAEA 131
Query: 145 F--VILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIAREC--------KLTKLSM 191
+ + GLM + + F L E+ + + ++LSM
Sbjct: 132 LLNAPELDALSHIRIVGLMGLATNTDDTDKVRLEFRGLKELYDKLGQIKRPMIQFSELSM 191
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D+ LA+ G+T VR+GS IFG R
Sbjct: 192 GMSGDYRLAVEEGSTLVRVGSAIFGSR 218
>gi|146284538|ref|YP_001165491.1| alanine racemase domain-containing protein [Enterobacter sp. 638]
gi|145320671|gb|ABP62817.1| alanine racemase domain protein [Enterobacter sp. 638]
Length = 269
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 69/221 (31%), Positives = 105/221 (47%), Gaps = 7/221 (3%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L + +I+ + + R V L+ VSK +D K IR+A G ENK+QEA +K
Sbjct: 37 DNLAAVQSRIDAACQRSGRNVSDVRLLPVSKTMDEKHIRMAHQAGCNFLGENKVQEAWRK 96
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ D++ IG LQSNK + + + TA +L + + R L V++
Sbjct: 97 SQAMLDLTDLKWSVIGHLQSNKAKLVARFASEFQALDSFNTAEILDRRLQVEGRTLNVFV 156
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA 181
QVNT E K G+ P DF+ + + GLM + + + F L ++
Sbjct: 157 QVNTSAEPSKFGLAPETVVDFMAQLSTLKNIKLIGLMTLAEFTSDAERVRSCFIRLRKLR 216
Query: 182 REC----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +LSMGM+ DFE+AI GA VR+G IFG R
Sbjct: 217 DQLANVYGNLQLSMGMSGDFEIAIEEGANIVRVGQAIFGAR 257
>gi|18391333|ref|NP_563897.1| alanine racemase family protein [Arabidopsis thaliana]
gi|16226282|gb|AAL16123.1|AF428291_1 At1g11930/F12F1_20 [Arabidopsis thaliana]
gi|21436037|gb|AAM51596.1| At1g11930/F12F1_20 [Arabidopsis thaliana]
gi|332190696|gb|AEE28817.1| putative pyridoxal phosphate-dependent enzyme, YBL036C type
[Arabidopsis thaliana]
Length = 257
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 84/232 (36%), Positives = 116/232 (50%), Gaps = 18/232 (7%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ Q++ +A A R D + +VAVSK IR GQ F EN +QE +K
Sbjct: 25 AALRSVFQRVNQAAEKAGRGSDQIRVVAVSKTKPVSLIRQVYDAGQRSFGENYVQEIIEK 84
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FL 120
L + D++ FIG+LQSNKV + V +E+V EK A++L + R L
Sbjct: 85 APQLPE--DIEWHFIGNLQSNKVKPLLSGVPNLVTVESVDDEKIANMLDRVVGNIGRKPL 142
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNPKPH-FYLLS 178
V++QVNT E K G+ P+ ++ L GLM I A P F LL+
Sbjct: 143 KVFVQVNTSGEDSKFGVEPSGCVGLAKHVKEACSNLEFSGLMTIGMADYTSTPENFKLLA 202
Query: 179 ----EIARECKLT----KLSMGMTRDFELA--IASGATSVRIGSGIFGERPC 220
E+ +E + +LSMGM+ DFELA I G+T+VRIGS IFG R
Sbjct: 203 KCRSEVCKELGIPEEQCELSMGMSGDFELALQIELGSTNVRIGSTIFGAREY 254
>gi|281346889|gb|EFB22473.1| hypothetical protein PANDA_005479 [Ailuropoda melanoleuca]
Length = 273
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 78/245 (31%), Positives = 119/245 (48%), Gaps = 26/245 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A S GQ F EN
Sbjct: 11 LGIGFALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQRTFGEN 68
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSL 111
+QE +K L +++ FIG LQ V+++ V ++ETV K A ++
Sbjct: 69 YVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLIAVPNLFMLETVDSVKLADKVNS 128
Query: 112 EMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMG 168
K+ L V +QVNT E K G++P++T V + L GLM I
Sbjct: 129 SWQKKDSPEKLKVMVQVNTSGEESKHGLLPSETVAVVEHINTKCPSLEFVGLMTIGSFGH 188
Query: 169 N----PKPHFYLLSEIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ P P F +L + E +LSMGM+ DF+ AI G+T+VR+GS IFG
Sbjct: 189 DLSQGPNPDFQVLLSLREELCAKLNVPTDQVELSMGMSADFQHAIEVGSTNVRVGSTIFG 248
Query: 217 ERPCQ 221
ER
Sbjct: 249 ERDYS 253
>gi|153953817|ref|YP_001394582.1| hypothetical protein CKL_1192 [Clostridium kluyveri DSM 555]
gi|219854433|ref|YP_002471555.1| hypothetical protein CKR_1090 [Clostridium kluyveri NBRC 12016]
gi|146346698|gb|EDK33234.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219568157|dbj|BAH06141.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 222
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 72/232 (31%), Positives = 107/232 (46%), Gaps = 21/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L ++ + +V LVAVSK K I+ G F ENK+QE
Sbjct: 1 MSIKENLDKIEEDLRE---------SNVILVAVSKTKSIKDIQKVYDLGIRDFGENKVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + D++ FIG LQ NKV IV ++I ++ K L ++
Sbjct: 52 FVSKEPNLPE--DIRWHFIGHLQRNKVKYIVGKVELIHSLDGVKLLQELEKHYKAKNLTA 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLS 178
V IQ+N G E K+GI ++ + C + V+GLM + P + +F +
Sbjct: 110 NVLIQINIGCEENKTGIYLENLEELIEACELCTNVKVKGLMSVIPIGDEKSCRNYFRKMK 169
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
I ++ K + LSMGMT D+ +A+ G+T VRIG GIFG+R
Sbjct: 170 YIFQDLKNKKFTNISMDILSMGMTHDYGVAVEEGSTLVRIGEGIFGKRNYNN 221
>gi|75909109|ref|YP_323405.1| hypothetical protein Ava_2899 [Anabaena variabilis ATCC 29413]
gi|75702834|gb|ABA22510.1| Protein of unknown function UPF0001 [Anabaena variabilis ATCC
29413]
Length = 222
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 71/223 (31%), Positives = 110/223 (49%), Gaps = 14/223 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ ++I + I A P SV L+AV+K + ++ IR A + G F EN++QEA K
Sbjct: 2 ISSINERITH--IRASLPP-SVRLIAVTKQMPTEVIRAAYAAGVRDFGENRIQEAASKQA 58
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L+ D+ FIG LQ+NK + + F I +V K A L + V +QV
Sbjct: 59 QLQDLPDITWHFIGHLQANKAKKALEQFQWIHSVDNLKLAQRLDQLAQQLGVNPQVCLQV 118
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIARE 183
+ KSG + + Q L ++GLM IPP N F S++A +
Sbjct: 119 KILPDPNKSGWSVPELLADLPALNQCKTLQIQGLMTIPPFGLNDAKILHVFNSTSKLAED 178
Query: 184 --------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +LSMGM+ D++LA+ +GAT VR+G+ +FG+R
Sbjct: 179 IAEQNWDHIHMEQLSMGMSGDYQLAVQAGATMVRLGTILFGQR 221
>gi|297299225|ref|XP_001089087.2| PREDICTED: proline synthase co-transcribed bacterial homolog
protein [Macaca mulatta]
Length = 310
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 78/245 (31%), Positives = 120/245 (48%), Gaps = 26/245 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 46 LGVGCALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 103
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSL 111
+QE +K L +++ FIG LQ V+++ V ++ETV K A ++
Sbjct: 104 YVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSLKLADKVNS 163
Query: 112 EMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMG 168
K+ L V +Q+NT E K G+ P++T V + L GLM I
Sbjct: 164 SWQKKGSPERLKVMVQINTSGEESKHGLPPSETIAVVEHINAKCPSLEFVGLMTIGSFGH 223
Query: 169 N----PKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ P P F LL E+ ++ + +LSMGM+ DF+ AI G+T+VRIGS IFG
Sbjct: 224 DLSQGPNPDFQLLLSLRKELCKKLNIPADQVELSMGMSVDFQHAIEVGSTNVRIGSIIFG 283
Query: 217 ERPCQ 221
ER
Sbjct: 284 ERDYS 288
>gi|89052905|ref|YP_508356.1| hypothetical protein Jann_0414 [Jannaschia sp. CCS1]
gi|88862454|gb|ABD53331.1| Protein of unknown function UPF0001 [Jannaschia sp. CCS1]
Length = 217
Score = 253 bits (647), Expect = 1e-65, Method: Composition-based stats.
Identities = 86/214 (40%), Positives = 125/214 (58%), Gaps = 2/214 (0%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L ++ A R ++L+AVSK+ ++++ L+ G IF EN++QEA+ +W
Sbjct: 2 ALSDITTRLAACAETHGRAAADITLIAVSKVQPTERVDAVLTEGHRIFGENRVQEAQGRW 61
Query: 66 IPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ +D + L IG LQ+NK + V +F I TV R K A L+ ++ ++I
Sbjct: 62 PDFQARFDGIDLHLIGPLQTNKARQAVEMFGTIHTVDRPKLAKTLARLAQERGTSPDLFI 121
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVNTG E QK+G +P++ F+ R L + GLMCIPP P HF LL++IA+
Sbjct: 122 QVNTGEEPQKAGCLPSEADAFIADARAMD-LPLLGLMCIPPVDEEPSLHFALLAKIAKRN 180
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ LSMGM+ DFE AIA GAT +R+GS IFGER
Sbjct: 181 GLSGLSMGMSSDFETAIAQGATHIRVGSAIFGER 214
>gi|302380630|ref|ZP_07269095.1| pyridoxal phosphate enzyme, YggS family [Finegoldia magna
ACS-171-V-Col3]
gi|303234039|ref|ZP_07320688.1| pyridoxal phosphate enzyme, YggS family [Finegoldia magna BVS033A4]
gi|302311573|gb|EFK93589.1| pyridoxal phosphate enzyme, YggS family [Finegoldia magna
ACS-171-V-Col3]
gi|302494964|gb|EFL54721.1| pyridoxal phosphate enzyme, YggS family [Finegoldia magna BVS033A4]
Length = 226
Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats.
Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 17/231 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L + ++ A ++ L+AV+K VD +I+ A+ CG ENK QE
Sbjct: 1 MSIKDNLNEVNENLKKFASHG----ETPKLIAVTKTVDIDRIKEAIDCGVTDIGENKPQE 56
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ V IG LQSNKV ++V +I ++ R + ++
Sbjct: 57 MSWKYDELKD--SVNYHMIGHLQSNKVKDVVGKACLIHSLDRMSVLKEIEKRASAINKPQ 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
IQ+N E QKSG+ + F+ ++ + V+GLM I P +P+ F +
Sbjct: 115 DCLIQLNVAEEEQKSGLYLDDLDSFIEEIEKRKFVKVKGLMSIAPFADDPEEIRWVFKKM 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
EI + K + LSMGM+ D+++A+ G+ VR+GS IFG+R
Sbjct: 175 REIYDKIKNTEYKNIEMKYLSMGMSHDYKVALEEGSNMVRVGSFIFGKRNY 225
>gi|298377624|ref|ZP_06987576.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 3_1_19]
gi|298265643|gb|EFI07304.1| pyridoxal phosphate enzyme, YggS family [Bacteroides sp. 3_1_19]
Length = 222
Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats.
Identities = 59/234 (25%), Positives = 108/234 (46%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + K + V+LVAVSK + + A + GQ +F E++ QE
Sbjct: 1 MSIAQNIVQLKTSL----------PQGVTLVAVSKFHPVEALWEAYNAGQRVFGESRAQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + D++ FIG LQSNKV +I +I ++ K + ++ + K R +
Sbjct: 51 LSAKQKVLPE--DIEWHFIGPLQSNKVKDIAPFIHLIHSIDSLKLLAEVNKQAKKHDRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
V ++++ E K G+ P + K+ + + + + GLM + + + F
Sbjct: 109 RVLLEIHVAQEESKHGLSPEECKELLRDESSAEFQHIRICGLMGMATNTDDTGLIREEFR 168
Query: 176 LLSEIA---------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ ++ ++SMGM+ D+ +AI G++ +R+G+ IFGER
Sbjct: 169 NIHDLFIELKETLCKDNVDFKEISMGMSHDYPIAIQEGSSLIRVGTSIFGEREY 222
>gi|269798488|ref|YP_003312388.1| alanine racemase domain protein [Veillonella parvula DSM 2008]
gi|269095117|gb|ACZ25108.1| alanine racemase domain protein [Veillonella parvula DSM 2008]
Length = 228
Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats.
Identities = 69/226 (30%), Positives = 109/226 (48%), Gaps = 12/226 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q++ ++ R D+ LVAV+K + G EN++QEAK
Sbjct: 2 IEESLHAIQQRMADAMARVGR-VDTALLVAVTKNHPVSAVEEVARLGVTHVGENRVQEAK 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + K + IG LQ NKV + V +FD+I +V K ++ K + V
Sbjct: 61 EKQLTY-KGPQLTWHLIGHLQVNKVRQAVPMFDLIHSVDSRKLLDVIEKVAAKHDKMQDV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+QVN E K+G+ + + + + V GLMC+ P +P +P F + +
Sbjct: 120 LLQVNVAREASKTGMTVEEFPEIRDYAKTLPHVRVRGLMCMAPFFDDPQEARPIFRVANA 179
Query: 180 IARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K + LSMGMT DFE+A+ GA VR+G+ IFGER
Sbjct: 180 LFEDMKRYFEEGQIQYLSMGMTHDFEVALEEGANIVRVGTAIFGER 225
>gi|325846632|ref|ZP_08169547.1| pyridoxal phosphate enzyme, YggS family [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325481390|gb|EGC84431.1| pyridoxal phosphate enzyme, YggS family [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 224
Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats.
Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 22/233 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + + K+ +++ L+AV+K KI + G F ENK+QE
Sbjct: 1 MSIKDNIDDLKKDMKDY---------DAMLLAVTKTHGVDKIMEVYNYGLRDFGENKVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L D+ IG LQ+NKV++IV +I +V K ++ K S
Sbjct: 52 LLDKKDELPD--DINWHLIGHLQTNKVNKIVGEIRLIHSVDSLKILKKINNRAKKLSIVQ 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
+Q+N E KSG +D + ++ + + GLM + P + + F L
Sbjct: 110 DCLLQINISKEESKSGFYEEDIEDIINQAKELENVKIRGLMTMAPNTEDVSVIRSCFKGL 169
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+I ++ LSMGMT D+++A+ GA +R+GS IFG+R +
Sbjct: 170 KKIFDNLSNLSYNNIEMEYLSMGMTHDYKIALEEGANIIRVGSKIFGKRMYKN 222
>gi|321315303|ref|YP_004207590.1| hypothetical protein BSn5_19795 [Bacillus subtilis BSn5]
gi|320021577|gb|ADV96563.1| hypothetical protein BSn5_19795 [Bacillus subtilis BSn5]
Length = 230
Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats.
Identities = 63/227 (27%), Positives = 106/227 (46%), Gaps = 16/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ ++I + + R D V+++AV+K V ++ + A+ G EN+ E
Sbjct: 1 MRVVDNLRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ + FIGSLQS K +V+ I ++ R A + +
Sbjct: 61 LLRKQELMKGNP--EWHFIGSLQSRKAKSVVNAVSYIHSLDRLSLAKEIEKRAEG---IV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVNT E K G+ + F+ + V GLM + P + + F L
Sbjct: 116 RCFVQVNTSLEPSKHGMKKEEVIPFIQELSGFEHILVAGLMTMAPLTDDQDQIRSCFRSL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
E+ + + T+LSMGM+ DFE+AI GAT +RIGS + G
Sbjct: 176 RELRDQVQKLNQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVG 222
>gi|332884875|gb|EGK05130.1| YggS family pyridoxal phosphate enzyme [Dysgonomonas mossii DSM
22836]
Length = 244
Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats.
Identities = 74/228 (32%), Positives = 123/228 (53%), Gaps = 12/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N L V Q+I+ + R + V L+ +K V +++IR AL CG+ + ENK+QE
Sbjct: 3 TVKNNLFVIHQRIKVACDRTNRDVNDVRLLLATKTVPAERIRFALDCGETLIGENKVQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+K L + ++ + +IG LQ+NK+ E++ IE++ R L ++ + + +
Sbjct: 63 KEKEEKLTQ-YNCEKHYIGHLQTNKIKEVLRYVTCIESIDRLDVVQKLDQRLLFEGKSID 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+ +QVN+ YE K G+ P F+ + L ++GLM I + F LL
Sbjct: 122 ILVQVNSSYEESKFGLDPINVIPFIKKIAKYDTLKIKGLMTIGLFSAEEEKVRRCFRLLK 181
Query: 179 EIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+I R+ +T+LSMGM+ D E+AI GAT +R+G+ IFGER
Sbjct: 182 DIQRQVIEENISNVDMTQLSMGMSGDLEVAIEEGATIIRVGTAIFGER 229
>gi|49474718|ref|YP_032760.1| hypothetical protein BQ12320 [Bartonella quintana str. Toulouse]
gi|49240222|emb|CAF26691.1| hypothetical protein BQ12320 [Bartonella quintana str. Toulouse]
Length = 229
Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats.
Identities = 102/215 (47%), Positives = 143/215 (66%), Gaps = 1/215 (0%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ ++ I + RP + V L+AVSK V + I L GQ +FAEN++QEA +K
Sbjct: 13 EAWKNLQKDIIETCQNMNRPLEEVQLIAVSKTVSADHIFPLLQAGQSVFAENRVQEAAEK 72
Query: 65 WIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W LR+++ ++L IG LQSNK +E V +FDVI+TV REK A LS+EM KQ R LP Y
Sbjct: 73 WPRLRQQFKFIELHLIGPLQSNKTAEAVKIFDVIQTVDREKIAKSLSIEMQKQKRILPCY 132
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVN G E+QKSGI P + FV C+ Y L++ GLM IPP NP P+F LL+++A++
Sbjct: 133 VQVNIGLELQKSGIPPQEVIPFVAQCKNHYGLDIIGLMAIPPVKENPGPYFALLAKLAKK 192
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L KLSMGM+ DF++A+ G+ ++RIGS +FG+R
Sbjct: 193 AGLPKLSMGMSNDFKIALQFGSNTLRIGSALFGKR 227
>gi|119583765|gb|EAW63361.1| proline synthetase co-transcribed homolog (bacterial), isoform
CRA_b [Homo sapiens]
gi|119583768|gb|EAW63364.1| proline synthetase co-transcribed homolog (bacterial), isoform
CRA_b [Homo sapiens]
Length = 310
Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats.
Identities = 78/245 (31%), Positives = 119/245 (48%), Gaps = 26/245 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 46 LGVGCALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 103
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSL 111
+QE +K L +++ FIG LQ V+++ V ++ETV K A ++
Sbjct: 104 YVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKLADKVNS 163
Query: 112 EMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMG 168
++ L V +Q+NT E K G+ P++T V + L GLM I
Sbjct: 164 SWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGH 223
Query: 169 N----PKPHFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ P P F LL + E KL +LSMGM+ DF+ A+ G+T+VRIGS IFG
Sbjct: 224 DLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFG 283
Query: 217 ERPCQ 221
ER
Sbjct: 284 ERDYS 288
>gi|297588310|ref|ZP_06946953.1| YggS family pyridoxal phosphate enzyme [Finegoldia magna ATCC
53516]
gi|297573683|gb|EFH92404.1| YggS family pyridoxal phosphate enzyme [Finegoldia magna ATCC
53516]
Length = 226
Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats.
Identities = 69/231 (29%), Positives = 111/231 (48%), Gaps = 17/231 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L + ++ A ++ L+AV+K VD +I+ A+ CG ENK QE
Sbjct: 1 MSIKDNLNEVNENLKKFASHG----ETPHLIAVTKTVDIDRIKEAIDCGVTDIGENKPQE 56
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ V IG LQSNKV ++V +I ++ R + ++
Sbjct: 57 MSWKYDELKDC--VNYHMIGHLQSNKVKDVVGKACLIHSLDRMSVLKEIEKRASAINKPQ 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
IQ+N E QKSG+ + F+ + + V+GLM I P +P+ F +
Sbjct: 115 DCLIQLNVAEEEQKSGLYLDDLDSFIEEIEKTEFVKVKGLMSIAPFAEDPEEIRWVFKKM 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
EI + K + LSMGM+ D+++A+ G+ VR+GS IFG+R
Sbjct: 175 REIYDKIKNTEYKNIEMKYLSMGMSHDYKVALEEGSNMVRVGSFIFGKRNY 225
>gi|114619661|ref|XP_528110.2| PREDICTED: proline synthetase co-transcribed homolog isoform 2 [Pan
troglodytes]
Length = 275
Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats.
Identities = 79/245 (32%), Positives = 119/245 (48%), Gaps = 26/245 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 11 LGVGCALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGYGQRTFGEN 68
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSL 111
+QE +K L +++ FIG LQ V+++ V ++ETV K A ++
Sbjct: 69 YVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKLADKVNS 128
Query: 112 EMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMG 168
K+ L V +Q+NT E K G+ P++T V + L GLM I
Sbjct: 129 SWQKKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGH 188
Query: 169 N----PKPHFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ P P F LL + E KL +LSMGM+ DF+ A+ G+T+VRIGS IFG
Sbjct: 189 DLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFG 248
Query: 217 ERPCQ 221
ER
Sbjct: 249 ERDYS 253
>gi|154685954|ref|YP_001421115.1| YlmE [Bacillus amyloliquefaciens FZB42]
gi|154351805|gb|ABS73884.1| YlmE [Bacillus amyloliquefaciens FZB42]
Length = 230
Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats.
Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 16/230 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++L+ ++I + + R + V+++AV+K V +++ + A+ G EN+ E
Sbjct: 1 MRVADQLRHINERINEACNRSGRSPEDVTVIAVTKYVSAERAQEAVDAGITSLGENRDAE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K ++ + FIGSLQS KV +V I ++ R A + +
Sbjct: 61 LIHKQEVIKGSP--EWHFIGSLQSRKVKAVVDRVSYIHSLDRLSLAKEIEKRAQ---HAV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVNT E K G+ + F+ + ++VEGLM + P + + F L
Sbjct: 116 RCFVQVNTSLEPSKHGLKTEEVIPFIRELSEFRNISVEGLMTMAPLTDDTETIRACFRQL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ + + +LSMGM+ D+E+A+ GAT +RIGS + G P
Sbjct: 176 RDLRDQVQKLNQTNAPCRELSMGMSNDYEIAVEEGATFIRIGSSLVGNEP 225
>gi|329910471|ref|ZP_08275312.1| hypothetical protein IMCC9480_164 [Oxalobacteraceae bacterium
IMCC9480]
gi|327546168|gb|EGF31216.1| hypothetical protein IMCC9480_164 [Oxalobacteraceae bacterium
IMCC9480]
Length = 233
Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats.
Identities = 80/232 (34%), Positives = 112/232 (48%), Gaps = 12/232 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + LQ I+ +A R S++L+AVSK D+ + A + GQ F EN LQ
Sbjct: 1 MSVISSNLQAVHGAIDAAAQAVSRLPHSITLLAVSKTFDAAAVLEAAAAGQRAFGENYLQ 60
Query: 60 EAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
EA K +R E ++ FIG +QSNK I FD + +V REK A LS +
Sbjct: 61 EALDKIAAVRLAQPELILEWHFIGPIQSNKTRPIAESFDWVHSVEREKIARRLSDQRPAG 120
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPH 173
L + +QVN E KSG+ + +L + GLM IP + +
Sbjct: 121 LPPLNICLQVNISGEASKSGVPAGEALAVAQAIAAMPRLGLRGLMAIPEPSTVVAEQRAA 180
Query: 174 FYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L + +C+ + LSMGM+ D AIA GAT VR+G+ IFG R
Sbjct: 181 FRQLHVLFEQCRAAGLPMDTLSMGMSSDLPAAIAEGATIVRVGTAIFGARTY 232
>gi|238018688|ref|ZP_04599114.1| hypothetical protein VEIDISOL_00532 [Veillonella dispar ATCC 17748]
gi|237865159|gb|EEP66449.1| hypothetical protein VEIDISOL_00532 [Veillonella dispar ATCC 17748]
Length = 239
Score = 253 bits (646), Expect = 2e-65, Method: Composition-based stats.
Identities = 68/226 (30%), Positives = 107/226 (47%), Gaps = 12/226 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q++ ++ R D+ LVAV+K + G EN++QEAK
Sbjct: 13 IEESLHAIQQRMADAMASVGR-VDTALLVAVTKNHPVSAVEEVARLGVTHVGENRVQEAK 71
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + K + IG LQ NKV + V +FD+I +V K + K + V
Sbjct: 72 EKQLTY-KGPALTWHLIGHLQVNKVRQAVPMFDLIHSVDSRKLLDEIEKVATKHDKVQDV 130
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+QVN E K+G+ + + + + V GLMC+ P +P +P F + +
Sbjct: 131 LLQVNVAREASKTGMSVEEFPEIRDYAKTLPHVRVRGLMCMAPFFDDPEEARPIFRVANA 190
Query: 180 IARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K + LSMGMT DFE+A+ GA VR+G+ IFG R
Sbjct: 191 LYEDMKGYFEEGQIQYLSMGMTHDFEVALEEGANIVRVGTAIFGGR 236
>gi|269837214|ref|YP_003319442.1| alanine racemase domain-containing protein [Sphaerobacter
thermophilus DSM 20745]
gi|269786477|gb|ACZ38620.1| alanine racemase domain protein [Sphaerobacter thermophilus DSM
20745]
Length = 239
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 15/230 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKK---IRVALSCGQVIFAENKL 58
++ K+ ++ + +A A R S+ +V V+K + + A + G F EN++
Sbjct: 10 TVAEKVARVQELVRAAAERAGRDPASIRIVGVTKTLPPDANATVEAAWAAGLRDFGENRV 69
Query: 59 QEAKKKWIPLRK---EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
Q+A KK L E L IG LQ+NK + V LF +I +V R L +
Sbjct: 70 QDAAKKVSTLFTAVLEEGATLHLIGHLQTNKARDAVRLFSLIHSVDRPGLVDALQRRAER 129
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KP 172
+ + + +QVN E QK G P + + + + L+V GLM I P + +P +P
Sbjct: 130 EGKRQDILLQVNVAREEQKHGCAPEEAEALLRHAAAQPNLHVRGLMTIAPLVDDPEETRP 189
Query: 173 HFYLLSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
F L + + + L +LSMGMT D+E+AI GAT +R+G IFG
Sbjct: 190 VFAALRSLRDQLQEATGIALPELSMGMTNDYEVAIEEGATIIRVGRAIFG 239
>gi|332291056|ref|YP_004429665.1| alanine racemase domain protein [Krokinobacter diaphorus 4H-3-7-5]
gi|332169142|gb|AEE18397.1| alanine racemase domain protein [Krokinobacter diaphorus 4H-3-7-5]
Length = 215
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 69/227 (30%), Positives = 99/227 (43%), Gaps = 21/227 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + F++ I V+LVAVSK + A GQ IF ENK+QE
Sbjct: 1 MSIAENILRFRENI----------PSHVTLVAVSKTKPVSDLMEAYETGQRIFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KW + K D++ IG +Q+NKV + +I V R K ++ + R +
Sbjct: 51 MTDKWEEMPK--DIEWHMIGHVQTNKVKFMAPYVSLIHAVDRLKLIKEVNKQAEANDRVI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNPK---PHFY 175
+ IQ+ E K G+ +NV GLM + N F
Sbjct: 109 DILIQIKIAREDSKFGMAVQDAVKLFEENTLENYPHVNVVGLMGMATFTDNQDQITAEFE 168
Query: 176 LLSEIA----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LL + LT LS GM+ D++LAI G+T +R+GS IFG R
Sbjct: 169 LLEGLFLRFRESANLTILSSGMSGDYKLAIDKGSTMIRVGSSIFGAR 215
>gi|238897705|ref|YP_002923384.1| putative alanine racemase [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229465462|gb|ACQ67236.1| putative alanine racemase [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 239
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 77/226 (34%), Positives = 103/226 (45%), Gaps = 12/226 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +Q K++I + A R + L+AVSK K I A+ GQ F EN +QE
Sbjct: 3 AIKQNIQNVKERILSDAQNCGRSPKEIQLLAVSKTRSVKLITEAIQAGQYAFGENYVQEG 62
Query: 62 KKKWIPLRKEW----DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+K K Q FIG LQSNK + FD TV R K A LS +
Sbjct: 63 IEKIHYFSKNRMGNIKPQWHFIGPLQSNKTRSVAEYFDWCHTVDRFKLAERLSAQRPSNL 122
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQVN E KSG+M ++ D L +L + GLM IP + + +
Sbjct: 123 PDLNVLIQVNISKEKTKSGVMLSELFDLASLISPLPKLKLCGLMAIPALIKDYHQQLVVF 182
Query: 178 SEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ + LS+GMT D AI +G+T VRIG GIF
Sbjct: 183 EEMHSAFLELKKEYPEWDILSLGMTNDMTAAIHAGSTLVRIGEGIF 228
>gi|317124653|ref|YP_004098765.1| alanine racemase domain protein [Intrasporangium calvum DSM 43043]
gi|315588741|gb|ADU48038.1| alanine racemase domain protein [Intrasporangium calvum DSM 43043]
Length = 241
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 9/228 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ L +L+ +++I + A R V+LV V+K + + + G ENK QE
Sbjct: 11 LELAGRLEAVRERINAACADAGRDPGEVTLVVVTKFFPASDVLLLHDLGVRAIGENKDQE 70
Query: 61 AKKKW----IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
A K L D+++ F+G LQSNK + DV+ ++ R K L +
Sbjct: 71 AGPKVAQVREALPPGSDLEVHFVGRLQSNKARHVAGYADVVHSLDRRKLLDGLDAGAFDR 130
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
R L + IQV+ + + G +P + D Q+ L ++G+M + P +P F
Sbjct: 131 GRPLGLLIQVSLDGDTSRGGALPEEVPDLGAAVAQRAGLVLKGVMAVAPLGADPDVAFAS 190
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +A + + +S GM+ D E A+ GAT +R+G+ I G RP
Sbjct: 191 LRRVATDLQAVHPTADWVSAGMSGDLEAAVRHGATHLRVGTAILGSRP 238
>gi|167904160|ref|ZP_02491365.1| hypothetical protein BpseN_18061 [Burkholderia pseudomallei NCTC
13177]
Length = 232
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 81/230 (35%), Positives = 112/230 (48%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 61 ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V +QVN E KSG+ P L + GLM IP +P+
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLRGLMAIPEPETDPEAKRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + ++ + L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 181 ALHALFQQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDY 230
>gi|288572875|ref|ZP_06391232.1| alanine racemase domain protein [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288568616|gb|EFC90173.1| alanine racemase domain protein [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 238
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 12/223 (5%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQV-IFAENKLQEAKKKWI 66
+ ++ +A + R + V L+ V+K ++I G + EN++QEA+ K
Sbjct: 12 REVLDRMAEAAFRSGRRPEEVRLLGVTKTHPVERILPVARTGLLWALGENRVQEAEGKME 71
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL-PVYIQ 125
++ + IG LQ NK + ++LFDVI +V + A L ++ + + I+
Sbjct: 72 NWPEDLSIPWHLIGHLQRNKARKAMALFDVIHSVDSLRLAETLDRLALEFDKAPYDIMIE 131
Query: 126 VNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA 181
VNT E K GI P +T D + LN GLM + P + F +L E+
Sbjct: 132 VNTSGEASKHGISPEETLDLLDGIFSSCGYLNPVGLMTVGPLCDDQVRIGRAFGVLRELR 191
Query: 182 REC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L +LSMGM+ DFELAI G+T VR+GS IFGER
Sbjct: 192 DQATKEFGRSLPELSMGMSGDFELAIEEGSTIVRVGSAIFGER 234
>gi|148657357|ref|YP_001277562.1| alanine racemase domain-containing protein [Roseiflexus sp. RS-1]
gi|148569467|gb|ABQ91612.1| alanine racemase domain protein [Roseiflexus sp. RS-1]
Length = 244
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 79/242 (32%), Positives = 116/242 (47%), Gaps = 25/242 (10%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ ++L++ +++I +A A R ++ LV V+K + IR AL G EN++QEA
Sbjct: 3 TFIDRLRIVRERIAAAAQRAHRDPATIRLVGVTKAQPVEAIRTALDAGLCEIGENRVQEA 62
Query: 62 KKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK----Q 116
+ K L E + + IG LQ+NK + +LFD++ +V + A ++ +
Sbjct: 63 EAKMTALEAERYRLTWHLIGHLQTNKAKKAATLFDMVHSVDSLRLAQAINRYAAEVRRDP 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIM-------PNQTKDF---VILCRQKYQLNVEGLMCIPPA 166
R LP+ +QVN E KSG P+ + F V L+V GLM I P
Sbjct: 123 GRRLPILLQVNVSGEATKSGFDLYGWETQPDVYERFCADVEQILALPHLDVRGLMTIAPW 182
Query: 167 MGNP---KPHFYLLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+P +P F + LSMGMT DFE+AI GAT VRIG IFG
Sbjct: 183 APDPEAARPVFRATRRLRDALAQRFPIAPWRDLSMGMTDDFEVAIEEGATIVRIGRAIFG 242
Query: 217 ER 218
ER
Sbjct: 243 ER 244
>gi|56419666|ref|YP_146984.1| hypothetical protein GK1131 [Geobacillus kaustophilus HTA426]
gi|56379508|dbj|BAD75416.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 224
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 66/228 (28%), Positives = 109/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L +++IE + R V +VAV+K VD+++ L G EN+ +
Sbjct: 1 MTVRDNLAAIRREIEAACARVGRDPAGVRIVAVTKYVDAERAMEVLDAGIADLGENRSDQ 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + + FIG+LQS KV +I+ D I ++ R A + + R +
Sbjct: 61 LIEKHARIGNQ--ATWHFIGTLQSRKVKDIIDKVDYIHSLDRLSLAKEIEKRAV---RPV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E+ K G+ P +T F+ R ++ V GLM + P + + F L
Sbjct: 116 KCFVQVNVSGEVTKHGLAPEETIPFIEQLRAFSRIEVVGLMTMAPHTDDEAVLRACFRRL 175
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ + T+LSMGM+ D+ +AI GAT VRIGS + G
Sbjct: 176 RMLKERVQALGMAHAPCTELSMGMSNDYTIAIEEGATFVRIGSALVGS 223
>gi|309775014|ref|ZP_07670029.1| pyridoxal phosphate enzyme, YggS family [Erysipelotrichaceae
bacterium 3_1_53]
gi|308917232|gb|EFP62957.1| pyridoxal phosphate enzyme, YggS family [Erysipelotrichaceae
bacterium 3_1_53]
Length = 216
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 72/227 (31%), Positives = 119/227 (52%), Gaps = 25/227 (11%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
KLQ ++ + D+V+L+AVSK ++I A +CG +F ENK+QE K+
Sbjct: 3 KKKLQEIQKNL----------PDNVTLIAVSKTHTKEEIDEAYACGCRVFGENKVQELKE 52
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K+ Q IG LQ NKV ++V L D+I+++ + A + + K + +PV
Sbjct: 53 KYDA-----RYQWHMIGHLQRNKVKDVVPLADMIQSLDSLRLAEEIEKQCAKIDKIMPVL 107
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEI 180
I+VN E K+G+ + FV C Q L+V+GLMC+ P + + F ++ +
Sbjct: 108 IEVNISREANKTGVYMEECSAFVQQCMQFKHLDVQGLMCVGPLDADDERIEECFERMNVL 167
Query: 181 AREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ K+ LSMGM+ D++LA+ G+ +R+G+ IFG+R
Sbjct: 168 YHKLQGEYGAEKIRYLSMGMSSDYQLALKHGSNMIRLGTVIFGKRNY 214
>gi|77735663|ref|NP_001029529.1| proline synthase co-transcribed bacterial homolog protein [Bos
taurus]
gi|115311845|sp|Q3T0G5|PROSC_BOVIN RecName: Full=Proline synthase co-transcribed bacterial homolog
protein
gi|74267697|gb|AAI02406.1| Proline synthetase co-transcribed homolog (bacterial) [Bos taurus]
gi|296472322|gb|DAA14437.1| proline synthetase co-transcribed bacterial homolog protein [Bos
taurus]
Length = 273
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 78/245 (31%), Positives = 118/245 (48%), Gaps = 26/245 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A S GQ F EN
Sbjct: 11 LGIGFALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQRTFGEN 68
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSL 111
+QE +K L +++ FIG LQ V+++ V ++ETV K A ++
Sbjct: 69 YVQELLEKASNPQILSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETVDSVKLADKVNS 128
Query: 112 EMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMG 168
K+ L V +Q+NT E K G+ P + V + L GLM I
Sbjct: 129 AWQKKGSPERLKVMVQINTSGEASKHGLPPAEMAALVEHINAKCPSLEFVGLMTIGSFGH 188
Query: 169 N----PKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ P P F +L E+ R+ +LSMGM+ DF+ AI G+T+VRIGS IFG
Sbjct: 189 DLSQGPNPDFQVLLSLREELCRKLGAPPEQVELSMGMSVDFQHAIEVGSTNVRIGSTIFG 248
Query: 217 ERPCQ 221
ER
Sbjct: 249 ERDYS 253
>gi|225713478|gb|ACO12585.1| Proline synthetase co-transcribed bacterial homolog protein
[Lepeophtheirus salmonis]
Length = 228
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 71/232 (30%), Positives = 99/232 (42%), Gaps = 24/232 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L K K+ ++V+LVAVSK I+ A GQ +F ENK+QE
Sbjct: 9 IKENLLQIKNKL----------PENVTLVAVSKTKPIADIQEAYDAGQRVFGENKIQEMV 58
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L K D++ IG LQ NKV + D+I V KT + + K +R +
Sbjct: 59 TKFDALPK--DIEWHMIGHLQRNKVKYMAHFVDLIHGVDSFKTLKEIDKQAKKHNRVIKC 116
Query: 123 YIQVNTGYEIQKSGIM--PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
+Q E K G+ + +N+ GLM + N + F L
Sbjct: 117 LLQARIAKEETKFGLSFSEIGEIISSEEISELKNINIVGLMGMATFTDNQEQLQEEFVSL 176
Query: 178 SEIA-------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
C L LS GM+ D+ LAI +G+T VRIGS IFG R T
Sbjct: 177 KRFFDAQITEKDNCNLQTLSTGMSGDYSLAIENGSTMVRIGSAIFGVRNYIT 228
>gi|313900932|ref|ZP_07834422.1| pyridoxal phosphate enzyme, YggS family [Clostridium sp. HGF2]
gi|312954352|gb|EFR36030.1| pyridoxal phosphate enzyme, YggS family [Clostridium sp. HGF2]
Length = 216
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 70/228 (30%), Positives = 117/228 (51%), Gaps = 25/228 (10%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
KLQ ++ + D V+L+AVSK ++I A +CG +F ENK+QE K+
Sbjct: 3 KKKLQEIQKHL----------PDHVTLIAVSKTHTKEEIDEAYACGCRVFGENKVQELKE 52
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K+ Q IG LQ NKV ++V L D+I+++ + A + + K + +PV
Sbjct: 53 KYDD-----RYQWHMIGHLQRNKVKDVVPLADMIQSLDSLRLAEEIEKQCAKIDKIMPVL 107
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEI 180
I+VN E K+G+ + FV C Q L+V+GLMC+ P + + F ++ +
Sbjct: 108 IEVNISREANKTGVYMEECPAFVKQCMQYKHLDVQGLMCVGPLDADRDRIEECFERMNIL 167
Query: 181 AREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ ++ LSMGM+ D+ +A+ G+ +R+G+ IFG+R
Sbjct: 168 FHKLQSEYGSEQIRYLSMGMSDDYPIALKHGSNMIRLGTVIFGKRNYS 215
>gi|304404025|ref|ZP_07385687.1| alanine racemase domain protein [Paenibacillus curdlanolyticus YK9]
gi|304347003|gb|EFM12835.1| alanine racemase domain protein [Paenibacillus curdlanolyticus YK9]
Length = 238
Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats.
Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 14/230 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L ++Q ++I + + R + V++VAV+K V + +R ++ + EN+ Q A
Sbjct: 6 TLAERIQEVDKRITAACERSGRDRRDVNVVAVTKYVSLETVRDVVAHDVLHLGENRWQNA 65
Query: 62 KKKWIPLRKEWDVQ---LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K KW ++ + +IGSLQS K +++ F I ++ R ++ K
Sbjct: 66 KPKWEAFNEQPANEQPVWHYIGSLQSKKAKDVIGKFTYIHSLDRISLVEAIADRADKLGL 125
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+P +IQVN E K G+ P + + F+ +Q + GLM + P P +P F
Sbjct: 126 VVPCFIQVNVSGEASKQGLEPEELESFIRTLKQFPSIKPIGLMTMAPFEAEPEETRPVFR 185
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
L + + LT+LSMGM+ DFE+AI GAT VR+G+ + G+
Sbjct: 186 ELRLLRDKLNAQGILDEPLTELSMGMSNDFEVAIEEGATWVRLGTILVGK 235
>gi|282889722|ref|ZP_06298261.1| hypothetical protein pah_c004o075 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500296|gb|EFB42576.1| hypothetical protein pah_c004o075 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 225
Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats.
Identities = 75/223 (33%), Positives = 106/223 (47%), Gaps = 11/223 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + K +IE A R D +SL+AVSK + I+ G F E+++QEA
Sbjct: 3 SVQDNYLKIKVRIEEYARKYGRASDEISLIAVSKTYPVESIQTVYEAGCRNFGESRVQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L D+Q IGSLQ NKVS+IV F +I +V + A +S +K
Sbjct: 63 LQKQPRLPS--DIQWHLIGSLQLNKVSKIVGKFTLIHSVDSFELAKKISETSLKLGVQTS 120
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+ +QVNT E+ K G + + VEGLM + P + + F L
Sbjct: 121 ILLQVNTSGELTKHGWSGEACQKDYEHILSLSGICVEGLMTMAPFSNDEQAVRNCFQKLR 180
Query: 179 EIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + L LSMGM+ DF AIA GAT +RIG+ IF
Sbjct: 181 LLKEQLSISSGRLLPHLSMGMSNDFGWAIAEGATLLRIGTAIF 223
>gi|291533842|emb|CBL06955.1| pyridoxal phosphate enzyme, YggS family [Megamonas hypermegale
ART12/1]
Length = 229
Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENS-AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L+ ++ I+ S A + V LVAV+K D ++ A+ G + EN++QEA
Sbjct: 2 IKENLKTVQEHIKESIAKRHNAASEDVLLVAVTKNHDVTSMQEAIDAGANVIGENRVQEA 61
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L + DV IG LQ+NK V LFD+IE+V K A L+ E K +
Sbjct: 62 LQKHETLNR--DVTWHLIGHLQTNKAKYAVKLFDMIESVDSIKLAEALNKEAQKIDKVQQ 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYLLS 178
V +QVN E K+G+ + + + L + GLM I P + + +P F +
Sbjct: 120 VLVQVNLVKEASKTGVYLEELGELLAKIDILSNLKLMGLMFIAPKVDNLEDVRPMFAQMF 179
Query: 179 EIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ ++ + LSMGMT D+++AI GA VR+G+GIFG R
Sbjct: 180 KLFKKVQAKTFATSEIKYLSMGMTHDYQIAIEEGANIVRVGTGIFGPRQY 229
>gi|169824333|ref|YP_001691944.1| putative proline synthetase associated protein [Finegoldia magna
ATCC 29328]
gi|167831138|dbj|BAG08054.1| putative proline synthetase associated protein [Finegoldia magna
ATCC 29328]
Length = 226
Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats.
Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 17/231 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L + ++ A ++ L+AV+K VD +I+ A+ CG ENK QE
Sbjct: 1 MSIKDNLNEVNENLKKFASHG----ETPKLIAVTKTVDIDRIKEAIDCGVTDIGENKPQE 56
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ V IG LQSNKV ++V +I ++ R + ++
Sbjct: 57 MSWKYDELKD--SVNYHMIGHLQSNKVKDVVGKACLIHSLDRMSVLKEIEKRASAINKPQ 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
IQ+N E QKSG+ + F+ ++ + V+GLM I P +P+ F +
Sbjct: 115 DCLIQLNVAEEEQKSGLYLDDLDSFIEEIEKRKFVKVKGLMSIAPFAEDPEEIRWVFKKM 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
EI + K + LSMGM+ D+++A+ G+ VR+GS IFG+R
Sbjct: 175 REIYDKIKNTEYKNIEMKYLSMGMSHDYKVALEEGSNMVRVGSFIFGKRNY 225
>gi|160947744|ref|ZP_02094911.1| hypothetical protein PEPMIC_01679 [Parvimonas micra ATCC 33270]
gi|158446878|gb|EDP23873.1| hypothetical protein PEPMIC_01679 [Parvimonas micra ATCC 33270]
Length = 232
Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats.
Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + +KI + + R K + L+ VSK VD KI+ A+ G F ENK+QE
Sbjct: 1 MKENINNILEKISLACKNSNRDKKEIFLLPVSKTVDVDKIQEAIDLGFDTFGENKVQEIL 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KK+ + V+ IG LQ+NKV I+ ++I ++ R L LE + +
Sbjct: 61 KKYEYF--DGKVKFHMIGHLQTNKVKSIIDKVELIHSLDRISLLDKLELEAKNKGITVNC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
++VN G E KSGI DF+ ++ + V GLM + P + + +F +
Sbjct: 119 LVEVNIGKEDSKSGIFEEDVLDFIREVSKRDNVLVNGLMTVAPYCEDAEDTRIYFKKMKS 178
Query: 180 IAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E + LSMGM+ DF +AI G+ +RIG+ IFG R
Sbjct: 179 LFDEISKLKLKNVDMKILSMGMSNDFMVAIEEGSNLIRIGTSIFGARNY 227
>gi|146301878|ref|YP_001196469.1| alanine racemase domain-containing protein [Flavobacterium
johnsoniae UW101]
gi|146156296|gb|ABQ07150.1| alanine racemase domain protein [Flavobacterium johnsoniae UW101]
Length = 243
Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats.
Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 12/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L+ +IE + + R V L+ +K V +++IR+A+ G+ + ENK+QE
Sbjct: 4 NIIYNLKQVHDRIEKACKASGRDTADVQLLLATKTVPAERIRIAIEAGENLIGENKMQEF 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L K+ +++ FIG LQ+NKV +++ I+++ R A L ++ K++R +
Sbjct: 64 RDKDSEL-KDLNIERHFIGHLQTNKVKDVLKYVSCIQSLDRLSLAEELHKQLQKENRAIA 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLS 178
V++QVNT +E K G+ P + F+ R+ L ++GLM I +P +LL
Sbjct: 123 VFVQVNTSFEESKFGLSPTEVIPFIKEIRKYDTLKIKGLMTIGLLDVEKEKMRPSLHLLK 182
Query: 179 EIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
EI + + LSMGM++D ELAIA G+ VR+G+ IFG R
Sbjct: 183 EIRDQIYEAEIEGLSNLKLSMGMSQDLELAIAEGSNLVRVGTSIFGNR 230
>gi|53720454|ref|YP_109440.1| hypothetical protein BPSL2846 [Burkholderia pseudomallei K96243]
gi|167817288|ref|ZP_02448968.1| hypothetical protein Bpse9_19264 [Burkholderia pseudomallei 91]
gi|167912418|ref|ZP_02499509.1| hypothetical protein Bpse112_18169 [Burkholderia pseudomallei 112]
gi|217420924|ref|ZP_03452429.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
576]
gi|226194204|ref|ZP_03789803.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
Pakistan 9]
gi|254191574|ref|ZP_04898077.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
Pasteur 52237]
gi|254194883|ref|ZP_04901313.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
S13]
gi|254257980|ref|ZP_04949034.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
1710a]
gi|254299169|ref|ZP_04966619.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
406e]
gi|52210868|emb|CAH36856.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|157809158|gb|EDO86328.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
406e]
gi|157939245|gb|EDO94915.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
Pasteur 52237]
gi|169651632|gb|EDS84325.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
S13]
gi|217396336|gb|EEC36353.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
576]
gi|225933669|gb|EEH29657.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
Pakistan 9]
gi|254216669|gb|EET06053.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
1710a]
Length = 232
Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats.
Identities = 81/230 (35%), Positives = 111/230 (48%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 61 ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V +QVN E KSG+ P L + GLM IP +P+
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLRGLMAIPEPETDPEAKRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + + + L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 181 ALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDY 230
>gi|311272381|ref|XP_003133417.1| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like isoform 2 [Sus scrofa]
Length = 275
Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats.
Identities = 78/245 (31%), Positives = 120/245 (48%), Gaps = 26/245 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP++ LVAVSK + + A + GQ IF EN
Sbjct: 11 LGIGFALRAVNERVQQA--VARRPRELPAIQPRLVAVSKTKPADMVIEAYNHGQRIFGEN 68
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSL 111
+QE +K L +++ FIG LQ V+++ V ++ETV K A ++
Sbjct: 69 YVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSMKLADKVNS 128
Query: 112 EMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMG 168
K+ L V +QVNT E K G++P++T V + L GLM I
Sbjct: 129 SWQKKGSPERLKVMVQVNTSGEESKHGLLPSETVAMVEHVKAKCPSLEFVGLMTIGSFGH 188
Query: 169 N----PKPHFYLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ P P F +L + E +LSMGM+ DF+ AI G+T+VRIGS IFG
Sbjct: 189 DLSQGPNPDFQVLVSLREELCQKLHIPVDQVELSMGMSVDFQHAIEVGSTNVRIGSTIFG 248
Query: 217 ERPCQ 221
ER
Sbjct: 249 ERDYS 253
>gi|212636422|ref|YP_002312947.1| hypothetical protein swp_3673 [Shewanella piezotolerans WP3]
gi|212557906|gb|ACJ30360.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
Length = 214
Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats.
Identities = 76/198 (38%), Positives = 105/198 (53%), Gaps = 9/198 (4%)
Query: 32 AVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE-WDVQLRFIGSLQSNKVSEI 90
AVSK +++I A + GQ F EN +QE ++K L ++ D++ FIG LQSNK I
Sbjct: 2 AVSKTKPNEQIIEAYTAGQRRFGENYVQEGEEKVKSLSQDYPDIEWHFIGPLQSNKTKII 61
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
LFD + TV REK AS L+ + + L V IQVN E KSG+ +
Sbjct: 62 AGLFDWMHTVEREKIASRLNDQRPEHMSPLNVCIQVNISQEASKSGVTTAEIAALAEKIH 121
Query: 151 QKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--------LTKLSMGMTRDFELAIA 202
LN+ GLM IP A + L+E+ ++ + + LS+GM+ D ELA+A
Sbjct: 122 LLPNLNLRGLMAIPSASVDNVTAIAELAELQKQYQRLSAKYPSVDTLSVGMSNDLELAVA 181
Query: 203 SGATSVRIGSGIFGERPC 220
G+T VRIGS IFG R
Sbjct: 182 HGSTMVRIGSAIFGARDY 199
>gi|23098934|ref|NP_692400.1| hypothetical protein OB1479 [Oceanobacillus iheyensis HTE831]
gi|22777162|dbj|BAC13435.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 223
Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats.
Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 16/226 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L ++ I + A R + + L+AV+K V ++ + A++ G EN+ +
Sbjct: 3 DVATNLSNIQENIRQACANANRSPEDIRLIAVTKYVTIERTKEAINAGIDNLGENRNEGF 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ ++ + V FIGSLQS KV +I++ D I ++ R+ A ++ + +
Sbjct: 63 LEKYNEIQNQ--VNWHFIGSLQSRKVKDIINQVDFIHSLDRKSLAKEINKRA---THPVN 117
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
++QVN E K GI P++ F+ + + GLM + P + +P + F L
Sbjct: 118 CFVQVNVSGEESKHGIFPDEVISFIKSLSGYENIKIVGLMTMAPHVEDPEDVRSVFKKLR 177
Query: 179 EIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFG 216
++ E + LSMGM+ D+ +AI GAT VRIGS + G
Sbjct: 178 DLRDEITKKELPHAPCEWLSMGMSNDYHIAIEEGATHVRIGSKLVG 223
>gi|103488501|ref|YP_618062.1| hypothetical protein Sala_3024 [Sphingopyxis alaskensis RB2256]
gi|98978578|gb|ABF54729.1| Protein of unknown function UPF0001 [Sphingopyxis alaskensis
RB2256]
Length = 220
Score = 252 bits (644), Expect = 3e-65, Method: Composition-based stats.
Identities = 87/217 (40%), Positives = 115/217 (52%), Gaps = 2/217 (0%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++L + I ++A A+R D + L+AVSK D+ IR + GQ F EN++QEA
Sbjct: 5 ADRLAEVQGHIADAARRARRRPDEICLIAVSKTHDADAIRPLIVAGQRHFGENRVQEATA 64
Query: 64 KWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KW LR E DV L IG LQSNK E V+LFD I +V R L+ K + +
Sbjct: 65 KWPALRAELPDVVLHLIGRLQSNKAEEAVALFDAIHSVDRSSLVQALAKACEKTGKRPQL 124
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++QVN G E QK G + L + GLM IPPA P P F LL E+A
Sbjct: 125 FVQVNIGNEEQKGGCPVADLPALLAE-ATAAGLQIAGLMAIPPADIEPAPFFALLDELAA 183
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L SMGM+ D+E A+ GAT VR+G+ +FG R
Sbjct: 184 RHALPLRSMGMSGDYETAVMLGATHVRVGTALFGARD 220
>gi|160914738|ref|ZP_02076952.1| hypothetical protein EUBDOL_00745 [Eubacterium dolichum DSM 3991]
gi|158433278|gb|EDP11567.1| hypothetical protein EUBDOL_00745 [Eubacterium dolichum DSM 3991]
Length = 215
Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats.
Identities = 69/217 (31%), Positives = 111/217 (51%), Gaps = 14/217 (6%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
IE + + + V L+AVSK +++ A G F ENK+QE K+ P
Sbjct: 2 NIEKTKQILQELPSHVELIAVSKTRTKEEVDEAYRLGCRTFGENKVQELVAKYDP----- 56
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
IG LQ NKV + V D+IE++ + A + + K + +PV ++VN E
Sbjct: 57 KYTWHLIGHLQRNKVKDAVKYADMIESLDSMRLAQEIEKQCAKIDKVMPVLVEVNISQEE 116
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK---- 185
K+GI + +F+ C+Q L+++GLMC+ P N + F + + +E +
Sbjct: 117 NKTGIAYEECINFIKECQQFPHLDIQGLMCVGPLTDNQADIEACFESMHTLFQEAQEAFG 176
Query: 186 --LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGM+ D+ELAI G+T VR+G+ +FG+R
Sbjct: 177 PSIHILSMGMSDDYELAIKHGSTMVRLGTILFGKRDY 213
>gi|29655369|ref|NP_821061.1| hypothetical protein CBU_2091 [Coxiella burnetii RSA 493]
gi|153209616|ref|ZP_01947454.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
gi|154705905|ref|YP_001425492.1| hypothetical cytosolic protein [Coxiella burnetii Dugway 5J108-111]
gi|161831443|ref|YP_001597825.1| hypothetical protein COXBURSA331_A2216 [Coxiella burnetii RSA 331]
gi|212213535|ref|YP_002304471.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212]
gi|212219589|ref|YP_002306376.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154]
gi|29542641|gb|AAO91575.1| hypothetical cytosolic protein [Coxiella burnetii RSA 493]
gi|120575301|gb|EAX31925.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
gi|154355191|gb|ABS76653.1| hypothetical cytosolic protein [Coxiella burnetii Dugway 5J108-111]
gi|161763310|gb|ABX78952.1| conserved hypothetical protein [Coxiella burnetii RSA 331]
gi|212011945|gb|ACJ19326.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212]
gi|212013851|gb|ACJ21231.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154]
Length = 228
Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats.
Identities = 84/226 (37%), Positives = 116/226 (51%), Gaps = 9/226 (3%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ +I + R ++VSL+AVSK KI+ A++ GQ F EN LQE
Sbjct: 1 MSISENIKRITTEIRQAEKEFSRSPNAVSLLAVSKSQSLDKIKEAIAAGQRQFGENYLQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K LR ++ FIG +Q+NK I + FD +++VSR + AS L + L
Sbjct: 61 ALVKIKALRAHP-LEWHFIGVIQTNKTRLISTNFDWVQSVSRLEVASELHHYRPLELPPL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
+ IQVN E KSG+ +F Q +L + GLM IP + F L
Sbjct: 120 SICIQVNISEEKTKSGVDLTNLSEFAKAVSQFDRLRLRGLMTIPAYQKDFNAQKATFEKL 179
Query: 178 SE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E I + L LS+GMT DF AIA+G+T VRIG+GIFG R
Sbjct: 180 KEAQQQLIKKGLPLDVLSLGMTHDFRAAIAAGSTMVRIGTGIFGPR 225
>gi|308173500|ref|YP_003920205.1| hypothetical protein BAMF_1609 [Bacillus amyloliquefaciens DSM 7]
gi|307606364|emb|CBI42735.1| conserved hypothetical protein [Bacillus amyloliquefaciens DSM 7]
gi|328553569|gb|AEB24061.1| hypothetical protein BAMTA208_09470 [Bacillus amyloliquefaciens
TA208]
gi|328911639|gb|AEB63235.1| hypothetical protein LL3_01695 [Bacillus amyloliquefaciens LL3]
Length = 230
Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats.
Identities = 59/227 (25%), Positives = 109/227 (48%), Gaps = 16/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++L+ ++I + + R + V+++AV+K V +++ + A+ G EN+ E
Sbjct: 1 MRVADQLRHINERINEACNRSGRSPEDVTVIAVTKYVSAERAQEAVDAGITSLGENRDTE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ + FIGSLQ+ KV +V I ++ R A + +
Sbjct: 61 LIRKQDVIKGSP--EWHFIGSLQTRKVKAVVDRVSYIHSLDRLSLAKEIEKRAP---HAV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVNT E K G+ + F+ ++VEGLM + P + + F L
Sbjct: 116 RCFVQVNTSREPSKHGLKTEEVIPFIRELSDFRNISVEGLMTMAPLTDDTETIRACFRQL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
++ + + +LSMGM+ D+E+A+ GAT +RIGS + G
Sbjct: 176 RDLRDQVQQLNQTNAPCRELSMGMSNDYEIAVEEGATFIRIGSSLVG 222
>gi|54023739|ref|YP_117981.1| hypothetical protein nfa17710 [Nocardia farcinica IFM 10152]
gi|54015247|dbj|BAD56617.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 251
Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 11/228 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +IE + + R DSV ++ V+K ++ + + G F E++ QEA
Sbjct: 20 LSANLDALLARIEAACRASGRAPDSVRMLPVTKFFPARDVAILHDLGLREFGESREQEAS 79
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL------EMIKQ 116
K L + IG LQ NK + + +V E+ A+ L ++
Sbjct: 80 AKVAELSGLDGIAWHMIGRLQRNKAKVVARWAHTVHSVDSERLATALDRGACAALAAGER 139
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ + V +QV+ + + G++P + L + GLM IPP P F L
Sbjct: 140 AEPVRVLVQVSLDADPARGGVVPAELDALADRIAAAEGLQLAGLMAIPPLDAEPDSAFAL 199
Query: 177 L-----SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +AR +LS GM+ D E AIA G+T VR+G+ + G RP
Sbjct: 200 LETLHTRILARHPGARELSAGMSGDLESAIAHGSTCVRVGTALMGARP 247
>gi|159898076|ref|YP_001544323.1| alanine racemase domain-containing protein [Herpetosiphon
aurantiacus ATCC 23779]
gi|159891115|gb|ABX04195.1| alanine racemase domain protein [Herpetosiphon aurantiacus ATCC
23779]
Length = 248
Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats.
Identities = 71/241 (29%), Positives = 117/241 (48%), Gaps = 25/241 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++ +Q+I +A + R SV L+AV+K +I L+ G EN++QEA+
Sbjct: 8 LLEQVAQIQQRISQAAQRSHRDPASVRLIAVTKTHPMLRINAVLAAGIHDLGENRVQEAE 67
Query: 63 KKWI--PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS--- 117
+K + IG LQ NK LF +I ++ K A +L+ + +++
Sbjct: 68 EKIALQTPEALAQTRWHLIGHLQRNKARRAAKLFSLIHSIDSVKLAEILNRIVDEEASVI 127
Query: 118 -RFLPVYIQVNTGYEIQK------SGIMPNQTKDF---VILCRQKYQLNVEGLMCIPPAM 167
+ LP+ +QVN E K G+ + DF V + +++ GLM I P
Sbjct: 128 PQPLPILLQVNVSGERSKDGFELAGGVHNSAWLDFVGEVRAIAELPLIDLRGLMTIAPYS 187
Query: 168 GN----PKPHFYLLSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ +P F L E+ + + L++LSMGM+ DFE+AI G+T VR+G+ +FG
Sbjct: 188 DDVEGVVRPCFRALREVRDQLEQRLDRPLSELSMGMSGDFEVAIEEGSTIVRVGTALFGA 247
Query: 218 R 218
R
Sbjct: 248 R 248
>gi|260892901|ref|YP_003238998.1| alanine racemase domain protein [Ammonifex degensii KC4]
gi|260865042|gb|ACX52148.1| alanine racemase domain protein [Ammonifex degensii KC4]
Length = 247
Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats.
Identities = 72/222 (32%), Positives = 112/222 (50%), Gaps = 11/222 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ ++ I +A+ A R V LVAV+K V + I L+ G V EN++QE
Sbjct: 5 IRENLRQVREAITRAALRAGRDPTEVQLVAVTKGVPVEVIEQVLAEGVVDLGENRVQELV 64
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L + + FIG LQ NKV +V ++ ++ R A L ++ P
Sbjct: 65 AKYKLLGDK--AKWHFIGYLQRNKVKYLVRRIALLHSLDRWSLAQELDRWGQREGFVFPA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLSE 179
+QVN E QK G++ + +DF++ R + V G M + P + +P F L+E
Sbjct: 123 LVQVNVAREPQKHGLLEEEVEDFLLAVRSLKGVKVLGFMTVAPWVAEAEEVRPVFRRLAE 182
Query: 180 IARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
IA+ ++ LSMGMT+DFE+A+ GA VR+G IF
Sbjct: 183 IAQRYTCLPGVEIRYLSMGMTQDFEVAVEEGANIVRVGRAIF 224
>gi|303229239|ref|ZP_07316035.1| pyridoxal phosphate enzyme, YggS family [Veillonella atypica
ACS-134-V-Col7a]
gi|302516094|gb|EFL58040.1| pyridoxal phosphate enzyme, YggS family [Veillonella atypica
ACS-134-V-Col7a]
Length = 228
Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats.
Identities = 71/226 (31%), Positives = 108/226 (47%), Gaps = 12/226 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q++ ++ R D+ LVAV+K + G EN++QEAK
Sbjct: 2 IEESLHKIQQRMADAMASVGR-TDTALLVAVTKNHPVTAVEEVARLGCTHVGENRVQEAK 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + L + IG LQ NKV + V +FD+I +V +K + K + +
Sbjct: 61 EKQM-LYTGPKLVWHLIGHLQVNKVRQAVPMFDLIHSVDSKKLLDEIEKVAAKHDKVQDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+QVN E KSG+ D + + V+GLMC+ P NP +P F +
Sbjct: 120 LLQVNVAREASKSGMSVEDFPDIRDYAKTLPHVRVKGLMCMAPFFENPEDARPIFRVAHA 179
Query: 180 IARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K + LSMGMT DFE+A+ GA VR+G+ IFGER
Sbjct: 180 LYEDMKGYFPDGDIQYLSMGMTHDFEIALQEGANIVRVGTAIFGER 225
>gi|16127975|ref|NP_422539.1| hypothetical protein CC_3745 [Caulobacter crescentus CB15]
gi|221236797|ref|YP_002519234.1| pyridoxal 5'-phosphate dependent enzyme class III [Caulobacter
crescentus NA1000]
gi|13425517|gb|AAK25707.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220965970|gb|ACL97326.1| pyridoxal 5'-phosphate dependent enzyme class III [Caulobacter
crescentus NA1000]
Length = 217
Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats.
Identities = 98/195 (50%), Positives = 126/195 (64%), Gaps = 2/195 (1%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
P SV+LVAVSK I L GQ +F EN++QEA ++W P R+ ++LR IG LQ
Sbjct: 22 PAGSVTLVAVSKTQPWDHIAPVLDVGQKVFGENRVQEAMERWGPHRQ--GLELRLIGPLQ 79
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
+NK E V FDVIET+ REK A +L+ E+ + + +Y+QVN G E QK+G+ P
Sbjct: 80 TNKAREAVGFFDVIETLDREKLARVLAEEVQRAGKAPRLYVQVNVGQETQKAGVAPGDAD 139
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIAS 203
F+ CR Y L +EGLMCIPP +P PHF L+ IA L KLSMGM+ DFE+AIA
Sbjct: 140 SFIGACRTTYGLTIEGLMCIPPFDQDPAPHFAQLASIAERNGLDKLSMGMSDDFEIAIAQ 199
Query: 204 GATSVRIGSGIFGER 218
GATSVR+GS +FG R
Sbjct: 200 GATSVRVGSALFGSR 214
>gi|303230544|ref|ZP_07317298.1| pyridoxal phosphate enzyme, YggS family [Veillonella atypica
ACS-049-V-Sch6]
gi|302514785|gb|EFL56773.1| pyridoxal phosphate enzyme, YggS family [Veillonella atypica
ACS-049-V-Sch6]
Length = 228
Score = 251 bits (643), Expect = 4e-65, Method: Composition-based stats.
Identities = 71/226 (31%), Positives = 107/226 (47%), Gaps = 12/226 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q++ ++ R D+ LVAV+K + G EN++QEAK
Sbjct: 2 IEESLHKIQQRMADAMASVGR-TDTALLVAVTKNHPVTAVEEVARLGCTHVGENRVQEAK 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + L + IG LQ NKV + V FD+I +V +K + K + +
Sbjct: 61 EKQM-LYTGPKLVWHLIGHLQVNKVRQAVPKFDLIHSVDSKKLLDEIEKVAAKHDKVQDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+QVN E KSG+ D + + V+GLMC+ P NP +P F +
Sbjct: 120 LLQVNVAREASKSGMSVEDFPDIRDYAKTLPHVRVKGLMCMAPFFENPEDARPIFRVAHA 179
Query: 180 IARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K + LSMGMT DFE+A+ GA VR+G+ IFGER
Sbjct: 180 LYEDMKGYFPDGDIQYLSMGMTHDFEIALQEGANIVRVGTAIFGER 225
>gi|304440207|ref|ZP_07400097.1| YggS family pyridoxal phosphate enzyme [Peptoniphilus duerdenii
ATCC BAA-1640]
gi|304371256|gb|EFM24872.1| YggS family pyridoxal phosphate enzyme [Peptoniphilus duerdenii
ATCC BAA-1640]
Length = 228
Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats.
Identities = 70/231 (30%), Positives = 106/231 (45%), Gaps = 14/231 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ +KIE + + + V L+AV+K I+ A+ G ENK+QE
Sbjct: 1 MDIKRNLEDVLKKIEIAEKKS-ISGEKVELIAVTKTHGIDIIKEAIELGVTDIGENKVQE 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L DV IG+LQSNKV I +I ++ R A + + + +
Sbjct: 60 FTTKYEKLGN--DVNFHMIGTLQSNKVKYIYDKAKLIHSLDRMSLAKEIERKAQASNIIV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
+QVN E K G+ ++T+ F+ L + GLM I + + F L
Sbjct: 118 NCLVQVNISNEESKGGVSFSETEKFIESLLDFKNLKIVGLMGIAKNTDDLSEIRDSFRRL 177
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E ++ LSMGM+ DFE+AI G+ VRIGS IFG+R
Sbjct: 178 YNLKEKIKKQNIEELEMKYLSMGMSSDFEMAIEEGSNMVRIGSSIFGKRDY 228
>gi|149410174|ref|XP_001513258.1| PREDICTED: similar to proline synthetase co-transcribed homolog
(bacterial) [Ornithorhynchus anatinus]
Length = 332
Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats.
Identities = 80/242 (33%), Positives = 119/242 (49%), Gaps = 26/242 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
LG L+ ++++ +A A+RP+D LVAVSK + + A GQ F EN +
Sbjct: 71 LGLALRAVTERVQQAA--ARRPQDLPAVQPRLVAVSKTKPADMVIEAYIHGQRSFGENYV 128
Query: 59 QEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEM 113
QE +K L +++ FIG LQ + V+++ V ++ETV K A ++
Sbjct: 129 QELLEKASNAKILSSCPEIKWHFIGHLQKHNVNKLITVPNLFMLETVDSVKLADRVNSSW 188
Query: 114 IKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN- 169
K+ L V +QVNT E K G++P T V + L GLM I +
Sbjct: 189 QKKGSPERLKVMVQVNTSGEESKHGLLPADTVATVEHINTKCPSLEFVGLMTIGSFGHDL 248
Query: 170 ---PKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P P F +L E+ + ++ +LSMGM+ DF+ AI G+T+VRIGS IFGER
Sbjct: 249 SQGPNPDFQMLVSLRKELCEKLNMSTDSVELSMGMSMDFQHAIEVGSTNVRIGSTIFGER 308
Query: 219 PC 220
Sbjct: 309 DY 310
>gi|282882126|ref|ZP_06290767.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus lacrimalis
315-B]
gi|281298156|gb|EFA90611.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus lacrimalis
315-B]
Length = 228
Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats.
Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 14/229 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L+ ++IE + + V+L+AV+K ++ I+ A+ G EN++QE
Sbjct: 1 MSVKDNLKFVMEEIEKA-KRHSLTNEDVNLIAVTKNHETDVIKEAIDLGITDIGENRVQE 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K K L V IG+LQ+NKV I + ++I+++ K A + +
Sbjct: 60 LKSKIDELG--PIVNYHMIGNLQTNKVKYIYNRVNMIQSLDTLKLAKEIDKRAGSDGIEV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
IQ+N G E QKSGI T F+ +++ GLM I P + + F +
Sbjct: 118 NCLIQINIGNEEQKSGIAYEDTLKFIYNLMDFKHISIRGLMAIAPNTDDKQYLRRLFRKM 177
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + ++ LSMGM+ D+++AI G+ VRIG+ IFG+R
Sbjct: 178 FEMKEKIIKENISSVRMDYLSMGMSSDYQIAIEEGSNMVRIGTKIFGKR 226
>gi|320533958|ref|ZP_08034522.1| pyridoxal phosphate enzyme, YggS family [Actinomyces sp. oral taxon
171 str. F0337]
gi|320133835|gb|EFW26219.1| pyridoxal phosphate enzyme, YggS family [Actinomyces sp. oral taxon
171 str. F0337]
Length = 248
Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats.
Identities = 68/224 (30%), Positives = 104/224 (46%), Gaps = 10/224 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + +I+ +A A R + L+ VSK V +++R A + G ENK+QEA++K
Sbjct: 7 NLDAVRARIDTAAERAGRDAAEIRLLPVSKTVPEERLRAAFAAGITQMGENKVQEAQRKS 66
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L + IG LQ+NK + + D + + + A L + R L VY+Q
Sbjct: 67 ENLAD-LGISWSVIGHLQTNKAKNVAAFADEFQALDSLRLAEALDRRLQAAGRGLDVYVQ 125
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
VN+ E K G+ P+ DF+ L V GLM + + + F ++ +
Sbjct: 126 VNSSGEPSKFGLEPDDVADFLAALPAYSSLRVRGLMTLAANTSDEVRVRECFSIMRRLRD 185
Query: 183 -ECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGM+ DFE AI G+T VR+G IFG R
Sbjct: 186 AALQAGTVGDGLLSMGMSGDFEAAIEGGSTCVRVGQAIFGTRAT 229
>gi|6005842|ref|NP_009129.1| proline synthase co-transcribed bacterial homolog protein [Homo
sapiens]
gi|12230426|sp|O94903|PROSC_HUMAN RecName: Full=Proline synthase co-transcribed bacterial homolog
protein
gi|4126978|dbj|BAA36842.1| Proline synthetase associated [Homo sapiens]
gi|12052758|emb|CAB66551.1| hypothetical protein [Homo sapiens]
gi|15147391|gb|AAH12334.1| Proline synthetase co-transcribed homolog (bacterial) [Homo
sapiens]
gi|49065490|emb|CAG38563.1| PROSC [Homo sapiens]
gi|190689559|gb|ACE86554.1| proline synthetase co-transcribed homolog (bacterial) protein
[synthetic construct]
gi|190690923|gb|ACE87236.1| proline synthetase co-transcribed homolog (bacterial) protein
[synthetic construct]
Length = 275
Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats.
Identities = 78/245 (31%), Positives = 119/245 (48%), Gaps = 26/245 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 11 LGVGCALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 68
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSL 111
+QE +K L +++ FIG LQ V+++ V ++ETV K A ++
Sbjct: 69 YVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKLADKVNS 128
Query: 112 EMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMG 168
++ L V +Q+NT E K G+ P++T V + L GLM I
Sbjct: 129 SWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGH 188
Query: 169 N----PKPHFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ P P F LL + E KL +LSMGM+ DF+ A+ G+T+VRIGS IFG
Sbjct: 189 DLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFG 248
Query: 217 ERPCQ 221
ER
Sbjct: 249 ERDYS 253
>gi|306820239|ref|ZP_07453881.1| YggS family pyridoxal phosphate enzyme [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551736|gb|EFM39685.1| YggS family pyridoxal phosphate enzyme [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 232
Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 119/228 (52%), Gaps = 16/228 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + ++ I+N+ +K +D V L+AVSK VD +K++ A+ G V F ENK QE
Sbjct: 5 IKSNIEKVNYLIKNALARSKYNQD-VKLIAVSKTVDVEKVKEAIDSGVVDFGENKPQELV 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ D+ IG+LQ NKV I+ +I ++ + ++ +P
Sbjct: 64 RKYEVYN---DLNWHLIGTLQKNKVKYIIDKACLIHSLDSFALCDEVDKRAKDKNIIIPC 120
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGN---PKPHFYLLS 178
IQ+N E K GI ++ +FV + +K + ++GLM + + +P+F +
Sbjct: 121 LIQINISGEETKHGIKESELTEFVKVVTEKNTNIKLKGLMGMAAFEEDKEKTRPYFQRMK 180
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ ++T+LSMGM+ DFE+AI GAT VRIG+ IFGER
Sbjct: 181 ELLVSVNSKNINSLEMTELSMGMSNDFEIAIEEGATMVRIGTTIFGER 228
>gi|300814706|ref|ZP_07094956.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus sp. oral
taxon 836 str. F0141]
gi|300511179|gb|EFK38429.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus sp. oral
taxon 836 str. F0141]
Length = 228
Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats.
Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 14/229 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L+ ++IE + + V+L+AV+K ++ I+ A+ G EN++QE
Sbjct: 1 MSVKDNLKFVMEEIEKA-KRHSLTNEDVNLIAVTKNHETDVIKEAIDLGITDIGENRVQE 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K K L V IG+LQ+NKV I + +I+++ K A + +
Sbjct: 60 LKSKIDELG--PIVNYHMIGNLQTNKVKYIYNRVYMIQSLDTLKLAKEIDKRAGSDGIEV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
IQ+N G E QKSGI T F+ +++ GLM I P + + F +
Sbjct: 118 NCLIQINIGNEEQKSGIAYEDTLKFIYNLMDFKHISIRGLMAIAPNTDDKQYLRRLFRKM 177
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ + ++ LSMGM+ D+++AI G+ VRIG+ IFG+R
Sbjct: 178 FEMKEKIIKENISSVRMDYLSMGMSSDYQIAIEEGSNMVRIGTKIFGKR 226
>gi|296269390|ref|YP_003652022.1| alanine racemase domain-containing protein [Thermobispora bispora
DSM 43833]
gi|296092177|gb|ADG88129.1| alanine racemase domain protein [Thermobispora bispora DSM 43833]
Length = 249
Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats.
Identities = 70/226 (30%), Positives = 107/226 (47%), Gaps = 11/226 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L +Q+IE + A R + ++L+AV+K + IR+ G EN+ QEA
Sbjct: 20 LASALARVEQRIEEACRAAGRRRSEITLIAVTKTYPASDIRLLAGLGVTDIGENRDQEAS 79
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + D+ FIG LQ+NK +V D+I +V R + ++LS E ++ R +
Sbjct: 80 AKVAE-CADLDLTWHFIGQLQTNKARSVVRYADLIHSVDRSRLVTVLSREAVRAGREVGC 138
Query: 123 YIQVNTG-----YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
+QV+ + G P + D L + G+M + P G+P F L
Sbjct: 139 LVQVSLDPPTPEGTSGRGGARPEEVLDLAGQIAAAEGLRLRGVMAVAPLGGDPAEAFARL 198
Query: 178 SEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
EIAR + +S GM+ D AIA GAT VRIG+ + G R
Sbjct: 199 REIARAVQAEHPDAGIISAGMSGDLAEAIACGATHVRIGTALLGRR 244
>gi|255532810|ref|YP_003093182.1| alanine racemase domain-containing protein [Pedobacter heparinus
DSM 2366]
gi|255345794|gb|ACU05120.1| alanine racemase domain protein [Pedobacter heparinus DSM 2366]
Length = 229
Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats.
Identities = 64/232 (27%), Positives = 107/232 (46%), Gaps = 25/232 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L +K ++ V L+AVSK ++ + A + GQ IF EN +QE
Sbjct: 1 MSIADNLLKYK---------SELDPAGVKLIAVSKYQEADAVLEAYNAGQRIFGENIVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + D++ IG LQ+NKV I +I++V K + ++ + K R +
Sbjct: 52 LVDKQAKLPQ--DIEWHLIGHLQTNKVKYIAPFISLIQSVDSLKLLAEINKQAAKNKRVI 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMG---NPKPHFY 175
+Q+ E K G+ ++ + + + + G+M I F+
Sbjct: 110 DCLLQIYIADEDTKFGLGFDEAIELLRSEEFEAMKNVRITGVMGIASNHALEKQTSDEFH 169
Query: 176 LLSEIARECKL---------TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + KL ++SMGM+ D++LA+ G+T VRIGS IFG+R
Sbjct: 170 ELKVLFDGIKLSFFRKTAHFKEISMGMSGDYKLAVEQGSTMVRIGSSIFGKR 221
>gi|160896517|ref|YP_001562099.1| alanine racemase domain-containing protein [Delftia acidovorans
SPH-1]
gi|160362101|gb|ABX33714.1| alanine racemase domain protein [Delftia acidovorans SPH-1]
Length = 241
Score = 251 bits (642), Expect = 5e-65, Method: Composition-based stats.
Identities = 75/236 (31%), Positives = 112/236 (47%), Gaps = 17/236 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ NKLQ ++I ++ A R SV L++VSK + +R A+ G+ F EN +QE
Sbjct: 3 TIENKLQQIHERIASACAQAGRASGSVQLLSVSKTFGADAVREAVLAGERSFGENYIQEG 62
Query: 62 KKKWIP-----LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
K L +Q IG +QSNK + FD +TV R K A LS + +
Sbjct: 63 VDKIAAVRAMGLPGGETLQWHCIGPIQSNKTRLVAEHFDWAQTVDRLKIAERLSAQRPEG 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPH 173
L V IQ+N K+G+ P Q + Q +L + G+M IP P +
Sbjct: 123 LAPLQVCIQLNVDGGETKAGVAPQQALELAAAIVQLPRLALRGVMSIPDDAPGFEAQREV 182
Query: 174 FYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + + + +SMGMT D E A+A+G+T VR+GSGIFG+R
Sbjct: 183 HARATTVFEQIRASGLPGLERFDTVSMGMTGDLEAAVAAGSTMVRVGSGIFGQRNY 238
>gi|121608653|ref|YP_996460.1| alanine racemase domain-containing protein [Verminephrobacter
eiseniae EF01-2]
gi|121553293|gb|ABM57442.1| alanine racemase domain protein [Verminephrobacter eiseniae EF01-2]
Length = 239
Score = 251 bits (642), Expect = 6e-65, Method: Composition-based stats.
Identities = 78/237 (32%), Positives = 110/237 (46%), Gaps = 23/237 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ ++ + + A R SV L+AV+K ++ + A++ GQ F EN +QE
Sbjct: 3 TIATNLQQVADRMTRACMAAGRAPASVGLLAVAKTFNADAVAQAVAAGQRAFGENYIQEG 62
Query: 62 KKKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K + LR +Q IG +QSNK + FD + +V R K A LS +
Sbjct: 63 VDKILALRAALPDAALQWHCIGPVQSNKTRLVAEHFDWVHSVDRLKIAQRLSAQRPAHLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L + IQVN KSG+ Q + Q +L + GLM IP +P P F
Sbjct: 123 PLQLCIQVNLDGGATKSGVTAGQLPGLLRAIAQLPRLRLRGLMSIP----DPAPDFQAQK 178
Query: 179 EIARECK----------------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
I K LS+GMT D E AI +G+T VR+GSGIFG+RP
Sbjct: 179 AIHASVKRLFDQICASAVPGLEDFDTLSLGMTADLEAAIWAGSTLVRVGSGIFGDRP 235
>gi|209542806|ref|YP_002275035.1| alanine racemase domain-containing protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530483|gb|ACI50420.1| alanine racemase domain protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 248
Score = 251 bits (642), Expect = 6e-65, Method: Composition-based stats.
Identities = 91/197 (46%), Positives = 123/197 (62%), Gaps = 1/197 (0%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIGSLQ 83
D+V+LVAVSK + AL GQ++F EN++QEA K+ LR +W ++L IG LQ
Sbjct: 40 PDAVTLVAVSKFHPQSSVVAALEAGQMVFGENRVQEAAGKFPSLRADWPALRLHVIGGLQ 99
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
+NK + V + D+IE++ R A L + R + +QVNTG E QKSG+ Q
Sbjct: 100 TNKALDAVRIADMIESLDRPALADALVRAADRAGRLPDLLVQVNTGDEAQKSGVPRAQAD 159
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIAS 203
F+ CR+++ V GLMCIPPA +P PHF L+E+ R L LSMGM+ DFE AIA+
Sbjct: 160 AFITDCRRRFGDAVRGLMCIPPADRDPAPHFAFLAELGRAHGLEVLSMGMSADFEAAIAA 219
Query: 204 GATSVRIGSGIFGERPC 220
GAT VR+GS IFG+RP
Sbjct: 220 GATHVRVGSAIFGQRPA 236
>gi|84495987|ref|ZP_00994841.1| hypothetical protein JNB_00670 [Janibacter sp. HTCC2649]
gi|84382755|gb|EAP98636.1| hypothetical protein JNB_00670 [Janibacter sp. HTCC2649]
Length = 232
Score = 251 bits (642), Expect = 6e-65, Method: Composition-based stats.
Identities = 69/223 (30%), Positives = 110/223 (49%), Gaps = 5/223 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L L ++I+ +A+ A R + LV V+K + + + G ENK QEA
Sbjct: 7 DLAANLARVHERIDGAAMAAGRDAGDIDLVVVTKYFPASDVDLLADLGVRHIGENKDQEA 66
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + ++ + FIG LQSNKV+ + + DV+++V R K + L + R L
Sbjct: 67 SAKVADLTRRDELTVHFIGQLQSNKVAHVAAYADVVQSVDRAKIVTGLDRAAERHGRHLD 126
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V +QV + G+ P + + L + L++ G+M + P G+P+ F L E+A
Sbjct: 127 VLLQVALDGSGSRGGVAPEEARALADLVAESACLSLRGVMAVAPLEGDPRRAFARLRELA 186
Query: 182 RECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ T +S GM+ D E A+ GAT +R+GS I G RP
Sbjct: 187 DGIRAGHSDATWISAGMSGDLEEAVLEGATHLRVGSAILGSRP 229
>gi|331001802|ref|ZP_08325324.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412776|gb|EGG92159.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae oral taxon
107 str. F0167]
Length = 226
Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats.
Identities = 62/227 (27%), Positives = 116/227 (51%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ + ++ N+ + R D ++L+AVSK ++ I A G F ENK+QE
Sbjct: 2 VKENLKNIRDEMNNACERSNRNLDDITLIAVSKTKPNELIMEAYESGVRDFGENKVQELL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L DV+ IG LQ+NKV +++ +I ++ + A + E K+ +
Sbjct: 62 RKKEELPD--DVRWHMIGHLQTNKVRQLLGNTVLIHSIDSIRLADTIDTEARKKGIHVDG 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+++N E K G + + ++ + + + L+++GLM I P + N + +F L +
Sbjct: 120 LLEINIAKEASKYGFIEEELEEILPIFARYKNLHIKGLMTIAPNVENSEENRKNFKKLKK 179
Query: 180 I--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ ++ LSMGM+ D+ +A+ GA +R+G+GIFG+R
Sbjct: 180 LSVDIIDKNYDNVEVEFLSMGMSGDYIVALEEGANLLRVGTGIFGKR 226
>gi|301606812|ref|XP_002933001.1| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like [Xenopus (Silurana) tropicalis]
Length = 265
Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats.
Identities = 84/244 (34%), Positives = 121/244 (49%), Gaps = 28/244 (11%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKR----PKDSVSLVAVSKMVDSKKIRVALSCGQVIFA 54
MS +G LQ +++++++A A+R P LVAVSK + A S GQ F
Sbjct: 6 MSEEIGKALQCVRERVQHAA--ARRLKTLPAIDPRLVAVSKTKPVDMVIDAYSHGQRYFG 63
Query: 55 ENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLL 109
EN +QE +K L D++ FIG LQ ++++ V ++ET+ K A +
Sbjct: 64 ENYVQELAEKASDPNLLASCPDIKWHFIGHLQKTHINKLVGVPNLYILETIDSIKLADKV 123
Query: 110 SLEMIKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPA 166
+ K+ L V +QVNT E K G+ P +T + V R+ L GLM I
Sbjct: 124 NSSWQKKGSSEKLKVMVQVNTSSEDSKHGLAPTETTELVKHIREKCSSLEFVGLMTIGSF 183
Query: 167 MGN----PKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGI 214
+ P P F +L E+ + L +LSMGM+ DFE AI G+T+VRIGS I
Sbjct: 184 GYDITQGPNPDFQMLLAQREEVCEKLGLQIDSVELSMGMSSDFEHAIEVGSTNVRIGSTI 243
Query: 215 FGER 218
FGER
Sbjct: 244 FGER 247
>gi|317050340|ref|YP_004111456.1| alanine racemase domain-containing protein [Desulfurispirillum
indicum S5]
gi|316945424|gb|ADU64900.1| alanine racemase domain protein [Desulfurispirillum indicum S5]
Length = 222
Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats.
Identities = 69/222 (31%), Positives = 106/222 (47%), Gaps = 10/222 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +I + A ++S LVAVSK + + A G F EN+L E
Sbjct: 4 IALHYTRICAEIHALSQQAG--QESPVLVAVSKTFPASAVLEAYGAGCRDFGENRLPEFL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + D++ F+G LQS K ++V +I ++ R A + +
Sbjct: 62 QKVRELPR--DIRWHFVGQLQSRKARDVVGKAHLIHSLDRLSLAEAVEKQAASLKLVQGC 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+QVN G E QK G+ P F+ R + V GLMCIPPA + +F + ++ +
Sbjct: 120 LVQVNIGDEPQKGGVKPADLSGFIGQLRSFPHVEVRGLMCIPPASEDATLYFRQMRQLRQ 179
Query: 183 ECKLT------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +LSMGM+ D+ LA+ G+T VRIGS IFG+R
Sbjct: 180 RMQEEFPGLGGELSMGMSDDYSLAVREGSTLVRIGSAIFGQR 221
>gi|289523459|ref|ZP_06440313.1| pyridoxal phosphate enzyme, YggS family [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503151|gb|EFD24315.1| pyridoxal phosphate enzyme, YggS family [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 234
Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats.
Identities = 72/228 (31%), Positives = 109/228 (47%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVI-FAENKLQE 60
+ L+ K++I +A R D + L+AV+K + + A G + EN++QE
Sbjct: 5 DIQKNLESVKERIAKTAESVGRMPDQIKLIAVTKNQPLEAMLQASRSGLIDGIGENRVQE 64
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
AK K + + IG LQ NK + LFD+I+++ A++L + + +
Sbjct: 65 AKDKKERWPSDLKLPWHMIGHLQRNKAKLAIQLFDIIQSIDNMDLAAVLEKRLAALKKNM 124
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
V I+VN EI K G+ P R L + GLM I P + + + F L
Sbjct: 125 EVLIEVNISGEISKYGVDPKDVSSMAEYILRNCPSLKLVGLMGIGPLVKDREKIISSFVL 184
Query: 177 LSEIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + + +L +LSMGM+ DFELAI G+T VRIG IFG R
Sbjct: 185 LRRLKEKTEKDIGLQLHELSMGMSDDFELAIKEGSTMVRIGRAIFGPR 232
>gi|330836418|ref|YP_004411059.1| hypothetical protein Spico_0449 [Spirochaeta coccoides DSM 17374]
gi|329748321|gb|AEC01677.1| protein of unknown function UPF0001 [Spirochaeta coccoides DSM
17374]
Length = 235
Score = 251 bits (641), Expect = 7e-65, Method: Composition-based stats.
Identities = 71/229 (31%), Positives = 116/229 (50%), Gaps = 12/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L ++L ++ I L+ R ++L+AVSK + I A GQ IF EN++QE
Sbjct: 4 TLASRLAEARRTIREHVALSGRQDSDITLMAVSKTRPYETILEAYEAGQRIFGENRVQEI 63
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ + ++L IG LQSNKV ++V L D I++V + A +S +++ R +
Sbjct: 64 VDKFPLPSERPTGMRLHLIGHLQSNKVRKVVPLVDAIDSVHSLRLAGQISCVAMERGRVM 123
Query: 121 PVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
P+ ++ NT E KSG + V + + GLM I P G+ + F
Sbjct: 124 PILLEYNTSGESSKSGFTTEDDLFSAVEAISSLGGVKIRGLMTIGPLEGDEDAVRRAFRR 183
Query: 177 LSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + EC + LSMGM+ D+ +A+ G+T VR+G+ +FG+R
Sbjct: 184 LRSLRDECIKRFPSQDFSVLSMGMSSDYPVAVEEGSTLVRLGTTLFGQR 232
>gi|332187736|ref|ZP_08389471.1| alanine racemase, N-terminal domain protein [Sphingomonas sp. S17]
gi|332012302|gb|EGI54372.1| alanine racemase, N-terminal domain protein [Sphingomonas sp. S17]
Length = 219
Score = 251 bits (641), Expect = 7e-65, Method: Composition-based stats.
Identities = 87/215 (40%), Positives = 121/215 (56%), Gaps = 4/215 (1%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++L ++ +A L + +L+AVSK D+ IR L G +F EN++QEA K
Sbjct: 7 SRLATVSTALQRAAKLG--DHATPTLIAVSKTHDADTIRPLLDAGHRVFGENRVQEAAAK 64
Query: 65 WIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
W LR + V+L IG LQSNK + V+LFDVI TV R + L+ M K + +
Sbjct: 65 WPALRADYPGVELHLIGQLQSNKAEDAVALFDVIHTVDRPSLIAGLAQAMDKSGKRPDCF 124
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVN G E QK G + + R L GLM IPP + P+F LL+++ARE
Sbjct: 125 LQVNIGEEEQKGGCAIAEVPAMLAQARAA-GLPTIGLMAIPPHGLDAAPYFALLAKMARE 183
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LTKLSMGM+ D+E+A GA+ VR+GS +FG R
Sbjct: 184 LGLTKLSMGMSEDYEVAAMLGASHVRVGSALFGAR 218
>gi|255994435|ref|ZP_05427570.1| pyridoxal phosphate enzyme, YggS family [Eubacterium saphenum ATCC
49989]
gi|255993148|gb|EEU03237.1| pyridoxal phosphate enzyme, YggS family [Eubacterium saphenum ATCC
49989]
Length = 230
Score = 251 bits (641), Expect = 7e-65, Method: Composition-based stats.
Identities = 64/231 (27%), Positives = 103/231 (44%), Gaps = 15/231 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKR---PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+ L+ KI+ + AK V L V+K +IR A+ G++ ENK+
Sbjct: 3 DIVENLKEVHGKIDRAYDRAKEFHNENGEVMLCTVTKTRSISEIREAVDAGEIHLGENKV 62
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QE K+ V IG LQ+NKV I+ +I ++ K A + +
Sbjct: 63 QEITDKFEHFN---GVNFHMIGHLQTNKVKYIIDKVFLIHSLDSIKLAKEIDKRAKQHGI 119
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAM---GNPKPHF 174
V +QVN E K G+ P++ +F+ + V+GLM + P + + + +F
Sbjct: 120 TANVLVQVNISNEESKYGLSPDEVDEFIESVTADYDNILVKGLMSMAPIVKKSEDAREYF 179
Query: 175 YLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + LSMGM+ D+E+AI GA VR+G+ IFG R
Sbjct: 180 EKTKKMFDNYRQKYSQFEYLSMGMSGDYEVAIECGANIVRVGTSIFGPRSY 230
>gi|294102393|ref|YP_003554251.1| alanine racemase domain protein [Aminobacterium colombiense DSM
12261]
gi|293617373|gb|ADE57527.1| alanine racemase domain protein [Aminobacterium colombiense DSM
12261]
Length = 234
Score = 251 bits (641), Expect = 7e-65, Method: Composition-based stats.
Identities = 64/230 (27%), Positives = 111/230 (48%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKLQE 60
+ +++ + IE A + R + L+A++K +++ A+ G + EN++QE
Sbjct: 5 DIRKNVELIRNSIEEGAAKSGRQAHEIKLIAITKNHAVEEMVTAIRDAGIMYIGENRVQE 64
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+ K +E Q +G LQ NK + + +F I+++ E A L ++ +R +
Sbjct: 65 AQTKICSWPEEVQAQWHLVGHLQRNKARKALEIFHTIQSLESESLAERLERICVEMNRTV 124
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
V ++VNT E K G+ P + + + L+V G M + P + + F L
Sbjct: 125 QVLLEVNTSGETSKHGVAPKDVQALLDFVIEKCPSLHVAGFMTVGPLTDDENRVREAFAL 184
Query: 177 LSEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + + L +LSMGM+ DF+ AI G+T VRIG+ IFG R
Sbjct: 185 LRNLRDDLSSSTGVSLPELSMGMSGDFQWAIEEGSTMVRIGTAIFGPRSY 234
>gi|308069869|ref|YP_003871474.1| hypothetical protein PPE_03116 [Paenibacillus polymyxa E681]
gi|305859148|gb|ADM70936.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 233
Score = 251 bits (641), Expect = 8e-65, Method: Composition-based stats.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 13/227 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL +++ ++E + + R +D V+++AV+K V + + L EN+ Q+
Sbjct: 1 MSLEERIKEVNARVEAACARSGRSRDEVNVIAVTKYVSAATMTSVLDSDLEHVGENRWQD 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A KW L FIG LQ+NKV +++ F I ++ R A L + +
Sbjct: 61 AADKWSKLGDRG--TWHFIGHLQTNKVKDVIGKFKFIHSLDRLSLAQELDKKAAALGLRV 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K G+ F+ R+ ++V GLM + P +P +P F L
Sbjct: 119 KAFVQVNISGETSKYGLSSEAVVPFLEQIRELEHVDVIGLMTMAPHEEDPEKTRPVFRGL 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
E+ + LSMGM+ DFE+A+ GAT +R+GS + G
Sbjct: 179 RELRDRLNGQALTREPIVHLSMGMSNDFEVAVEEGATWLRLGSVLVG 225
>gi|51892365|ref|YP_075056.1| hypothetical protein STH1227 [Symbiobacterium thermophilum IAM
14863]
gi|51856054|dbj|BAD40212.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 230
Score = 251 bits (641), Expect = 8e-65, Method: Composition-based stats.
Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 13/231 (5%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + + ++I +A A R V LVAV+K ++I L+ G EN++Q
Sbjct: 1 MSKIMENVSLVLERIRRAAERAARDPAGVRLVAVTKTRTVEEIEAVLAAGIRDLGENRVQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E + K L+ IG+LQ+NKV + + ++I ++ R S L + ++ R
Sbjct: 61 ELRSKAPFLQDRQP-TWHLIGTLQTNKVKQALEWAELIHSLDRSALLSELVKQAERRGRP 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ +QVN E K G+ P + F+ Q+ + V GLM + P NP +PHF
Sbjct: 120 VDALVQVNVSGEASKHGLPPGDLEPFLRQVAQQRWVRVRGLMTMAPLSDNPEDARPHFRR 179
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L ++ + + L LSMGM+ D+E+A+ GAT VR+G+ IFG R
Sbjct: 180 LRQLRDQMQALGIEGVSLEHLSMGMSGDYEVAVEEGATLVRVGTAIFGPRD 230
>gi|317508842|ref|ZP_07966483.1| alanine racemase domain-containing protein [Segniliparus rugosus
ATCC BAA-974]
gi|316252866|gb|EFV12295.1| alanine racemase domain-containing protein [Segniliparus rugosus
ATCC BAA-974]
Length = 234
Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats.
Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 7/224 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L ++++ + A R V+LV V+K + + G F E++ QEA+
Sbjct: 7 LAERLASVREQVAEACARAGRDAREVTLVVVTKFFPASDAALLYELGCREFGESRDQEAR 66
Query: 63 KKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRFL 120
K L V+ IG +Q NK I S V+++V + + + ++ + L
Sbjct: 67 AKVAELGDSVPGVRWHMIGQIQRNKAKSIASWAHVVQSVDEARLVAAFEKAVSERGGQPL 126
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +QV+ + ++SG +P L ++GLM IPP +P + L+ +
Sbjct: 127 DVLVQVSLDGDGRRSGALPEDVPALADQIAASEHLRLQGLMAIPPLAADPAQAYERLARL 186
Query: 181 ARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
K LS GM+ DF AIA+G++ VR+G+ I G RP
Sbjct: 187 HDALKADHPSATTLSAGMSGDFATAIAAGSSCVRVGTAILGARP 230
>gi|332829127|gb|EGK01791.1| YggS family pyridoxal phosphate enzyme [Dysgonomonas gadei ATCC
BAA-286]
Length = 222
Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats.
Identities = 62/234 (26%), Positives = 108/234 (46%), Gaps = 26/234 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + K ++ ++V LVAVSK IRVA + GQ IF E+++QE
Sbjct: 1 MGISENIHSIKDRL----------PENVKLVAVSKFHPVDAIRVAYNAGQHIFGESRMQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L + D++ FIG LQ+NKV I+ I +V + S + + + +
Sbjct: 51 ISQKHPLLPQ--DIEWHFIGHLQTNKVKSIIPYTHTIHSVDSWRLLSEIEKSAARIGKRI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
++++ E K G ++ + F+ R+ + G+M + + + F
Sbjct: 109 CCLLEIHIAQEDAKFGFSFDECRSFLSGNQWRECKFAYIGGVMGMASNIEEESQIRKEFK 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L E K +++SMGM+ D+ +A+ G+T +R+GS IFGER
Sbjct: 169 SLKLFFDEIKNDYFAEDDCFSEISMGMSGDYTIAVEEGSTMIRVGSSIFGEREY 222
>gi|42522074|ref|NP_967454.1| hypothetical protein Bd0466 [Bdellovibrio bacteriovorus HD100]
gi|39574605|emb|CAE78447.1| unnamed protein product [Bdellovibrio bacteriovorus HD100]
Length = 219
Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats.
Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 12/205 (5%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
++AVSK+ ++K+R GQ +F EN +QEA +K L D+Q IG LQ NK
Sbjct: 14 KILAVSKLQPAEKVRALHVEGQRLFGENYVQEALEKQSVLSDLSDIQWHLIGHLQKNKAK 73
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
+V F +I +V + A ++S + ++ + IQVN E K G ++
Sbjct: 74 LVVGKFHLIHSVDSLELAQVISRQCEQKGVSQNILIQVNLAGEASKEGFSAETLENQWAE 133
Query: 149 CRQKYQLNVEGLMCIPPAMG---NPKPHFYLLSEIARECK---------LTKLSMGMTRD 196
+ L++ GLM +PP +P+F L ++ K L +LSMG + D
Sbjct: 134 LTKLPHLHIYGLMTMPPLTETGAEVRPYFAELRQLRDRLKTTTDTTVHPLNELSMGTSHD 193
Query: 197 FELAIASGATSVRIGSGIFGERPCQ 221
+ +A+ GAT VR+G+ +FGERP +
Sbjct: 194 YPVAVEEGATIVRLGTILFGERPAK 218
>gi|34495633|ref|NP_899848.1| hypothetical protein CV_0178 [Chromobacterium violaceum ATCC 12472]
gi|34101488|gb|AAQ57857.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 231
Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats.
Identities = 78/228 (34%), Positives = 113/228 (49%), Gaps = 9/228 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
SL ++LQ + +++ + A R + +L+AVSK + +R A +CGQ F EN +QE
Sbjct: 4 SLSSRLQQVRLRLDAACAAAGRAPGAAALLAVSKTFPADALRAAYACGQRAFGENYVQEL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K L +++ FIG LQSNK + + ++ R K A LS + L
Sbjct: 64 QQKCEALAG-LEIEWHFIGPLQSNKTRIVAERAHWVHSIDRLKIAERLSAQRPDGLPALN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V +QVN E KSG P + +L + GLMCIP + F L
Sbjct: 123 VCVQVNVSGEDSKSGCAPEEAAALARAVAALPRLRLRGLMCIPEPTEDTARLAAQFARLR 182
Query: 179 EIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ R+ L LSMGM+ D E A+A GAT VR+GS IFG+R Q
Sbjct: 183 GLQRQLNAEGLALDTLSMGMSADLETAVAEGATLVRVGSAIFGQRDYQ 230
>gi|57097863|ref|XP_539969.1| PREDICTED: similar to Proline synthetase co-transcribed bacterial
homolog protein [Canis familiaris]
Length = 275
Score = 250 bits (640), Expect = 8e-65, Method: Composition-based stats.
Identities = 79/245 (32%), Positives = 121/245 (49%), Gaps = 26/245 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 11 LGVGFALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPVEMVIEAYCHGQRTFGEN 68
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSL 111
+QE +K L +++ FIG LQ V+++ V ++ETV K A ++
Sbjct: 69 YVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKLADKVNS 128
Query: 112 EMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMG 168
K+ L V +QVNT E K G++P++T V + L GLM I
Sbjct: 129 SWQKKGSPERLKVMVQVNTSGEQSKHGLLPSETVSMVEHINAKCPSLEFVGLMTIGSFGH 188
Query: 169 N----PKPHFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ P P F +L + E KL+ +LSMGM+ DF+ AI G+T+VR+GS IFG
Sbjct: 189 DLSQGPNPDFQVLLSLREELCKKLSVPPEQVELSMGMSMDFQHAIEVGSTNVRVGSTIFG 248
Query: 217 ERPCQ 221
ER
Sbjct: 249 ERDYS 253
>gi|218246529|ref|YP_002371900.1| alanine racemase domain-containing protein [Cyanothece sp. PCC
8801]
gi|218167007|gb|ACK65744.1| alanine racemase domain protein [Cyanothece sp. PCC 8801]
Length = 224
Score = 250 bits (640), Expect = 9e-65, Method: Composition-based stats.
Identities = 73/227 (32%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L +L +Q I V L+AV+K V I+ A G FAE++LQE
Sbjct: 1 MTLVQRLDQIRQNI----------PPHVRLIAVTKQVSIDAIKEAYQAGVRDFAESRLQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L+ D+ FIG LQ+NK +I+ F I +V K A L+ ++S
Sbjct: 51 ALPKQAQLQDLRDISWHFIGHLQANKAKKILEHFHWIHSVDNLKIAQRLNRLAAEESIDP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
+ +QV + K G ++ + Q QL ++GLM I P + K F
Sbjct: 111 NICLQVKILPDPNKYGWQVSELIADLPQLEQCQQLKIQGLMTILPLGLSDKEILAAFQQT 170
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + L +LSMGM+ D+ LAI +GAT +R+G+ IFGER
Sbjct: 171 KVLETQINNQSTLSLNELSMGMSGDYLLAIQAGATMIRLGTIIFGER 217
>gi|325288842|ref|YP_004265023.1| protein of unknown function UPF0001 [Syntrophobotulus glycolicus
DSM 8271]
gi|324964243|gb|ADY55022.1| protein of unknown function UPF0001 [Syntrophobotulus glycolicus
DSM 8271]
Length = 229
Score = 250 bits (640), Expect = 9e-65, Method: Composition-based stats.
Identities = 76/228 (33%), Positives = 116/228 (50%), Gaps = 12/228 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L + +I +A + R + + LVAVSK V + + A + Q +F EN++QE
Sbjct: 1 MSIKQNLLDIRARIVRAAANSGRRIEDIKLVAVSKTVAIEGLAEAYAENQKVFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K+ L D + IGSLQ+NKV + S +I ++ R L+ E K+
Sbjct: 61 WQDKYEHLAA--DCEWHIIGSLQTNKVKYLNSRIVLIHSLDRLPLLEKLNSEGEKKGGVW 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLL 177
+QVN + K+G+ N+ +DF+ ++ ++GLM I G + F+ L
Sbjct: 119 NALVQVNVARDEAKAGLEVNEVRDFIENAVAFPKVKIKGLMTIGALNATAGETRDCFHQL 178
Query: 178 SEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ K+ +LSMGM+ DFE AI GAT VRIGS IFG R
Sbjct: 179 RELRNSLQTVKYPEKIQELSMGMSDDFETAIEEGATIVRIGSRIFGHR 226
>gi|71901698|ref|ZP_00683773.1| Protein of unknown function UPF0001 [Xylella fastidiosa Ann-1]
gi|71728540|gb|EAO30696.1| Protein of unknown function UPF0001 [Xylella fastidiosa Ann-1]
Length = 261
Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 103/228 (45%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L +I + R SV+L+ VSK VD IR++ G ENK Q+A
Sbjct: 23 DIRSNLTKVYSRIIAACQRVNRDPSSVTLLPVSKTVDEVHIRLSYEAGCRKLGENKAQDA 82
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW + D+ IG LQ+NK + + + + A +L + + R L
Sbjct: 83 YHKWEAMSDLTDLHWSVIGHLQTNKAKLVARFASEFQALDSLRVAEVLERRLQIEGRSLD 142
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V IQVNT E K G+ P + FV L V GLM + G+ + F L
Sbjct: 143 VLIQVNTSGETNKYGLPPEEVVRFVQALSAYPALRVRGLMTLALLSGDTSRVRQCFTQLR 202
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +T+LSMGM+ D E+AI GAT VR+G I+G R
Sbjct: 203 ILRDRIQQASPQGHHITELSMGMSGDLEIAIEEGATVVRVGQAIYGAR 250
>gi|257059562|ref|YP_003137450.1| alanine racemase [Cyanothece sp. PCC 8802]
gi|256589728|gb|ACV00615.1| alanine racemase domain protein [Cyanothece sp. PCC 8802]
Length = 224
Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats.
Identities = 73/227 (32%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L +L +Q I V L+AV+K V I+ A G FAE++LQE
Sbjct: 1 MTLVQRLDQIRQNI----------PPHVRLIAVTKQVSIDAIKEAYQAGVRDFAESRLQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L+ D+ FIG LQ+NK +I+ F I +V K A L+ ++S
Sbjct: 51 ALPKQAQLQDLRDISWHFIGHLQANKAKKILEHFHWIHSVDNLKIAQRLNRLAAEESIDP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
+ +QV + K G ++ + Q QL ++GLM I P + K F
Sbjct: 111 NICLQVKILPDPNKYGWQVSELIADLPQLEQCQQLKIQGLMTILPLGLSDKEILAAFQQT 170
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + L +LSMGM+ D+ LAI +GAT +R+G+ IFGER
Sbjct: 171 KALETQINNQSTLSLNELSMGMSGDYLLAIRAGATMIRLGTIIFGER 217
>gi|332705066|ref|ZP_08425151.1| pyridoxal phosphate enzyme, YggS family [Lyngbya majuscula 3L]
gi|332356243|gb|EGJ35698.1| pyridoxal phosphate enzyme, YggS family [Lyngbya majuscula 3L]
Length = 240
Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats.
Identities = 68/225 (30%), Positives = 106/225 (47%), Gaps = 19/225 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + +Q Q+++ +V L+AVSK V +K+R A G F EN+LQEA
Sbjct: 25 ITDNIQQILQQLK----------PNVRLIAVSKTVSVEKMREAYGAGIRDFGENRLQEAC 74
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ + FIG LQ NK V D I +V K A L+ + ++ V
Sbjct: 75 AKQEQLKDLEGISWHFIGHLQKNKAKLAVQTMDWIHSVDDLKLAQSLNRRANELNKRPKV 134
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+Q+ + K G Q + + L+++GLM I P + F E+A+
Sbjct: 135 CLQIKILPDPNKYGWSVEQLLETLPELEACDSLDIQGLMTILPLELSEAEIFDAFVEVAK 194
Query: 183 ---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L ++SMGM+ D+ AI +GAT +R+GS IFG+R
Sbjct: 195 FKEQLNQTTQLNLKEVSMGMSGDYLQAIKAGATMIRLGSKIFGKR 239
>gi|288942593|ref|YP_003444833.1| alanine racemase domain-containing protein [Allochromatium vinosum
DSM 180]
gi|288897965|gb|ADC63801.1| alanine racemase domain protein [Allochromatium vinosum DSM 180]
Length = 232
Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats.
Identities = 79/225 (35%), Positives = 111/225 (49%), Gaps = 8/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ +I+ + A RP SV+L+AVSK ++ IR A + GQ F E+ LQEA
Sbjct: 5 DIAQHRNQVLARIQAAIEHAGRPAGSVALIAVSKKQPAEAIRAAHAAGQRAFGESYLQEA 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D++ FIG +QSNK +I + FD + ++ A LS + L
Sbjct: 65 LDKQALLVDLSDIEWHFIGRIQSNKTRQIAAHFDWVHGLADLGHARRLSEQRPASRPPLN 124
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V +QVN E K G+ P+ + CR+ L V GLM +P + + F L
Sbjct: 125 VCLQVNLSGETSKGGVAPDAVGALLEPCRELPGLRVRGLMTLPAPSEDETEQRRPFRALR 184
Query: 179 EIAR-----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ +C L LSMGM+ D E AI GAT VRIG+ +FG R
Sbjct: 185 ELRDRLATPDCPLEVLSMGMSDDMEAAILEGATQVRIGTAVFGVR 229
>gi|157823503|ref|NP_001100790.1| proline synthase co-transcribed bacterial homolog protein [Rattus
norvegicus]
gi|149057846|gb|EDM09089.1| proline synthetase co-transcribed (predicted) [Rattus norvegicus]
Length = 275
Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats.
Identities = 74/243 (30%), Positives = 115/243 (47%), Gaps = 22/243 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKR--PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+ +G L+ ++++ S R P LVAVSK ++ + A GQ F EN +
Sbjct: 11 LGVGLALRAVNERVQQSVARRPRGLPAIQPRLVAVSKTKPTEMVIEAYGHGQRTFGENYV 70
Query: 59 QEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEM 113
QE +K L +++ FIG LQ V+++ V ++ET+ K A ++
Sbjct: 71 QELLEKASNPTLLSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETIDSVKLADKVNSSW 130
Query: 114 IKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGN- 169
K+ L V +Q+NT E K G++P++T V + L GLM I +
Sbjct: 131 QKKGSPERLKVMVQINTSGEDSKHGLLPSETVAVVEHIKASCPNLEFVGLMTIGSFGHDL 190
Query: 170 ---PKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P P F L E+ + L +LSMGM+ DF+ AI G+T++R+GS IFGER
Sbjct: 191 SQGPNPDFQRLLSLRQELCEKLGLPVEQVELSMGMSVDFQHAIEVGSTNIRVGSTIFGER 250
Query: 219 PCQ 221
Sbjct: 251 DYS 253
>gi|212275792|ref|NP_001130828.1| hypothetical protein LOC100191932 [Zea mays]
gi|194690222|gb|ACF79195.1| unknown [Zea mays]
Length = 243
Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats.
Identities = 75/210 (35%), Positives = 102/210 (48%), Gaps = 16/210 (7%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
SV +VAVSK IR G F EN +QE K L + D++ FIG+LQS
Sbjct: 32 PGSVRVVAVSKTKPVPVIRGVYDAGHRCFGENYVQELIDKAPQLPE--DIEWHFIGNLQS 89
Query: 85 NKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FLPVYIQVNTGYEIQKSGIMPN 140
NK + V D++E+V EK A+ L + R L V +QVNT E K G+ P+
Sbjct: 90 NKARALLAGVPNLDMVESVDDEKIANRLDRVVADLGRKPLKVLVQVNTSGEESKFGVDPS 149
Query: 141 QTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPH-FYLLS----EIARECKLT----KLS 190
+ + L GLM I + P F L+ E+ +E + +LS
Sbjct: 150 GCMELAKHVKLNCPNLVFSGLMTIGMLDYSSTPENFKALANCREEVCKELGIPEEQCELS 209
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERPC 220
MGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 210 MGMSADFEQAIEMGSTNVRVGSTIFGAREY 239
>gi|71275400|ref|ZP_00651686.1| Protein of unknown function UPF0001 [Xylella fastidiosa Dixon]
gi|71898572|ref|ZP_00680743.1| Protein of unknown function UPF0001 [Xylella fastidiosa Ann-1]
gi|170730375|ref|YP_001775808.1| hypothetical protein Xfasm12_1237 [Xylella fastidiosa M12]
gi|71163700|gb|EAO13416.1| Protein of unknown function UPF0001 [Xylella fastidiosa Dixon]
gi|71731696|gb|EAO33756.1| Protein of unknown function UPF0001 [Xylella fastidiosa Ann-1]
gi|167965168|gb|ACA12178.1| conserved hypothetical protein [Xylella fastidiosa M12]
Length = 261
Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 103/228 (45%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L +I + R SV+L+ VSK VD IR++ G ENK Q+A
Sbjct: 23 DIRSNLTKVYSRIIAACQRVNRDPSSVTLLPVSKTVDEVHIRLSYEAGCRKLGENKAQDA 82
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW + D+ IG LQ+NK + + + + A L + + R L
Sbjct: 83 YHKWEAMSDLTDLHWSVIGHLQTNKAKLVARFASEFQALDSLRVAEALERRLQIEGRSLD 142
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V IQVNT E K G+ P + FV L V GLM + G+ + F L
Sbjct: 143 VLIQVNTSGETNKYGLPPEEVVRFVQALSAYPALRVRGLMTLALLSGDTSRVRQCFTQLR 202
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +T+LSMGM+ D E+AI GAT+VR+G I+G R
Sbjct: 203 ILRDRIQQASPQGHHITELSMGMSGDLEIAIEEGATAVRVGQAIYGAR 250
>gi|228471405|ref|ZP_04056200.1| pyridoxal phosphate enzyme, YggS family [Porphyromonas uenonis
60-3]
gi|228306779|gb|EEK15905.1| pyridoxal phosphate enzyme, YggS family [Porphyromonas uenonis
60-3]
Length = 221
Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats.
Identities = 69/232 (29%), Positives = 106/232 (45%), Gaps = 26/232 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L + +I V LVAVSK + +R A GQ +F EN+ QE
Sbjct: 2 IAERLAEIRSQI----------PAQVQLVAVSKFHPVESVREAYEAGQRLFGENRAQELA 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + D+Q FIG+LQ NKV IV +IE+V E + + + R L +
Sbjct: 52 EKAPQLPE--DIQWHFIGTLQRNKVKYIVPYVSLIESVDSESLLQEIVKQANRFDRQLRI 109
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC----RQKYQLNVEGLMCIPPAMGN---PKPHFY 175
+Q E KSG+ + V + ++ + GLM + + + F
Sbjct: 110 LLQYKIAQEESKSGLDHAELLALVDHYLATPEWRERITICGLMGMATLTADKEQVRHEFD 169
Query: 176 LLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + E + +LSMGM+ D+ LA+ +G+T VRIG+ IFGER
Sbjct: 170 TLRALQTELRERYPDISWDELSMGMSNDWPLAVEAGSTIVRIGTAIFGERQY 221
>gi|258649210|ref|ZP_05736679.1| pyridoxal phosphate enzyme, YggS family [Prevotella tannerae ATCC
51259]
gi|260850475|gb|EEX70344.1| pyridoxal phosphate enzyme, YggS family [Prevotella tannerae ATCC
51259]
Length = 223
Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats.
Identities = 65/235 (27%), Positives = 99/235 (42%), Gaps = 27/235 (11%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + +L+ + I V LVAVSK +IR GQ F E+ Q
Sbjct: 1 MSAIQTRLECVRATI----------PHEVDLVAVSKFHPIAEIRDCYELGQRCFGESHEQ 50
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E + K L K D+ FIG LQ+NKV I +IE V + ++ K +R
Sbjct: 51 ELRIKQEELPK--DIAWHFIGHLQANKVKYIAPYIFMIEAVDTFRLLKEINKHAAKHNRI 108
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
+ ++V+ E K G P + + + + + GLMC+ + + F
Sbjct: 109 IDCLLEVHIAQEETKYGFTPEACRQLLADGEWKALKHIRLRGLMCMATNTDDTSQIRREF 168
Query: 175 YLLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L ++ E K S GMT D++LAI G+ +R+G+ IFG R
Sbjct: 169 QLALQLFEELKSTYFSDKDYFNVKSWGMTHDYKLAIEEGSNHIRVGTAIFGPRTY 223
>gi|297184144|gb|ADI20263.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
Length = 218
Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats.
Identities = 66/228 (28%), Positives = 101/228 (44%), Gaps = 20/228 (8%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + L + ++ + V LVAVSK + + A GQ F ENK+Q
Sbjct: 1 MTRIQSALTTVRASLQ----------EGVQLVAVSKTKPVELLFEAYEAGQRDFGENKVQ 50
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E K + K D++ IG +Q+NK+ + ++ V REK L K R
Sbjct: 51 EMALKAEAMPK--DIRWHMIGHVQTNKIKYMAPFVHMVHGVDREKVLRELDKHAKKVDRT 108
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYL 176
+ +QV+ E K G + ++ + + V GLM + N F
Sbjct: 109 INCLLQVHIAQEETKFGWSIAELEEVLPTLSVYSNIKVCGLMGMASNTDNKDQIGKEFSG 168
Query: 177 LSEI----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LS A++ LS+GM+ D+ +A+A GAT VRIGS IFG R
Sbjct: 169 LSNFYNAHAQKQGWNTLSIGMSGDYTIAMAHGATHVRIGSSIFGARTY 216
>gi|317151980|ref|YP_004120028.1| alanine racemase domain-containing protein [Desulfovibrio
aespoeensis Aspo-2]
gi|316942231|gb|ADU61282.1| alanine racemase domain protein [Desulfovibrio aespoeensis Aspo-2]
Length = 235
Score = 250 bits (639), Expect = 1e-64, Method: Composition-based stats.
Identities = 78/229 (34%), Positives = 106/229 (46%), Gaps = 10/229 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + ++ + +A A R ++LVAVSK + +R GQ F EN +QEA
Sbjct: 8 LAERAAEVRETLAEAARRAGRAPGDITLVAVSKFHAASDVRALAGAGQADFGENYVQEAL 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + FIG LQSNK +V F ++ +V K A L + + +
Sbjct: 68 AKREALAD-LGLNWHFIGGLQSNKARFVVGNFCLVHSVDSHKLAQALHKKASELGVVQDI 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQVN E QKSGI + + GLM +PP +P +P F L E
Sbjct: 127 LIQVNGAGEAQKSGITEENLIPLAEAVLGMGGVRLVGLMTLPPFFDDPARARPVFARLRE 186
Query: 180 IAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ +L LSMGMT DF A+ GAT VRIG+ IFG RP +T
Sbjct: 187 LRDALEARLGHRLPHLSMGMTGDFVPAVEEGATLVRIGTRIFGARPRRT 235
>gi|256545127|ref|ZP_05472493.1| YlmE protein [Anaerococcus vaginalis ATCC 51170]
gi|256399168|gb|EEU12779.1| YlmE protein [Anaerococcus vaginalis ATCC 51170]
Length = 224
Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 22/233 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + + K+ +EN +L+AV+K KI + G F ENK+QE
Sbjct: 1 MSIKDNIDDLKKDLENY---------DANLLAVTKTHGIDKIMEVYNYGLRDFGENKVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + + D+ IG LQ+NKV++IV +I +V K ++ S
Sbjct: 52 LIEKKEKMPE--DINWHLIGHLQTNKVNKIVGEVSLIHSVDSLKILKKINSRAKSLSIVQ 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
IQVN E KSG ++ + + +N++GLM + P + + F L
Sbjct: 110 DCLIQVNISKEETKSGFFVDEIDKVIEEASKLDNINIKGLMTMAPNTEDENLIRNCFREL 169
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+I + ++ LSMGMT D+++A+ GA +R+GS IFG+R +
Sbjct: 170 KKIFEKLSNLSYNNIEMKYLSMGMTHDYKIALEEGANIIRVGSKIFGKRMYKN 222
>gi|149280232|ref|ZP_01886355.1| hypothetical protein PBAL39_19280 [Pedobacter sp. BAL39]
gi|149229069|gb|EDM34465.1| hypothetical protein PBAL39_19280 [Pedobacter sp. BAL39]
Length = 229
Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 66/232 (28%), Positives = 106/232 (45%), Gaps = 25/232 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L +K ++ + V L+AVSK +++ + A GQ +F EN +QE
Sbjct: 1 MSIADNLLKYK---------SELDSEQVQLIAVSKFNEAEAVLEAYEAGQRVFGENIVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L K D++ IG LQ+NKV I +I++V K + + K R +
Sbjct: 52 LVDKQAQLPK--DIEWHLIGHLQTNKVKYIAPFISLIQSVDSLKLLIEIDKQAAKHKRVI 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMG---NPKPHFY 175
+Q+ E K G+ ++ + + + + GLM I F
Sbjct: 110 DCLLQIYIADEDTKFGLGFDEAVELLRSEEFAVLKNVRIVGLMGIASNNASEKQTNDEFT 169
Query: 176 LLSEIARECKL---------TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + KL +LSMGM+ D+++AI +G+T VRIGS IFG+R
Sbjct: 170 ELKVLFDGIKLSFFRKDDAFKELSMGMSGDYKIAIEAGSTMVRIGSSIFGKR 221
>gi|299144088|ref|ZP_07037168.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus sp. oral
taxon 386 str. F0131]
gi|298518573|gb|EFI42312.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus sp. oral
taxon 386 str. F0131]
Length = 228
Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 63/232 (27%), Positives = 116/232 (50%), Gaps = 15/232 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + + +IENS + V L+AVSKM +++ A + G F ENK+QE
Sbjct: 1 MSIKDNYEFILTEIENS-RKVSITGEEVKLIAVSKMRTIDEMKEAYNLGIRDFGENKVQE 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+K++ D+ IG+LQ+NKV I +I+++ R+ ++ ++ +
Sbjct: 60 LKEKFLNFD---DINFHMIGNLQTNKVKYIYDKVTLIQSLDRKSLLEEINKRADIKNIDV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+++N E QK G+ + +F+ C + ++G+M + P + + F +
Sbjct: 117 DCLVEINIAEESQKGGVPYTEALNFIETCIDYKNIKIKGIMTVAPDTSDKLFLRECFKKM 176
Query: 178 SEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ E ++ LSMGM+ D+++AI G+ VRIG+ IFG+R +
Sbjct: 177 FILKEKIIKLNYDEVEMKYLSMGMSGDYKIAIEEGSNMVRIGTSIFGKRNYK 228
>gi|309388999|gb|ADO76879.1| alanine racemase domain protein [Halanaerobium praevalens DSM 2228]
Length = 234
Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 70/210 (33%), Positives = 111/210 (52%), Gaps = 11/210 (5%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIG 80
R + L+AVSK ++ + + G F EN++QE ++K L K D+ FIG
Sbjct: 25 NRDPQEIKLLAVSKNHYAEAVEILNEAGVSYFGENRVQELEEKNEKLIEKGIDIDWHFIG 84
Query: 81 SLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
LQ NKV ++ +I+++ + A ++ K R +PV ++VN + K GIM
Sbjct: 85 HLQRNKVKYLMRMENCQMIQSIDSLRLAKEVNKRAKKNERIIPVLVEVNMAKDENKFGIM 144
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAREC-----KLTKLS 190
P + KDF+ ++ L +EGLM I P + + + +F + +I + L +LS
Sbjct: 145 PEEVKDFLKQIKEFENLKIEGLMTILPYLDDSQKLRSYFKQMKKIYDDVCENLMPLNELS 204
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERPC 220
MGMT D+++AI GAT VR+G IFGER
Sbjct: 205 MGMTNDYQIAIEEGATIVRVGRAIFGEREY 234
>gi|319761216|ref|YP_004125153.1| alanine racemase domain protein [Alicycliphilus denitrificans BC]
gi|317115777|gb|ADU98265.1| alanine racemase domain protein [Alicycliphilus denitrificans BC]
Length = 240
Score = 249 bits (638), Expect = 1e-64, Method: Composition-based stats.
Identities = 78/236 (33%), Positives = 108/236 (45%), Gaps = 15/236 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ ++I + A RP SV+L+AVSK ++ + A GQ F EN +QEA
Sbjct: 3 TIDRNLQRVHERIAQACAAAGRPPGSVALLAVSKTFGAESVHAAALAGQRAFGENYIQEA 62
Query: 62 KKKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K LR Q IG +QSNK + FD +TV R K A LS +
Sbjct: 63 VEKMAALRALAPALALQWHCIGPIQSNKTRLVAEHFDWAQTVDRLKIAQRLSEQRPAHLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVN KSG+ P+ + +L + G+M IP P +
Sbjct: 123 PLMVCIQVNVDGGATKSGVGPHDAAALAEAVARLPRLVLRGVMSIPDDAPTFEAQRALHE 182
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + K LSMGMT D E A+A+G+T VR+GSG+FG R
Sbjct: 183 RAAAVFHHIKAQGFEGLGQFDTLSMGMTGDLEAAVAAGSTMVRVGSGVFGARQYAA 238
>gi|319941855|ref|ZP_08016176.1| hypothetical protein HMPREF9464_01395 [Sutterella wadsworthensis
3_1_45B]
gi|319804508|gb|EFW01378.1| hypothetical protein HMPREF9464_01395 [Sutterella wadsworthensis
3_1_45B]
Length = 238
Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 102/232 (43%), Gaps = 15/232 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L KQ + + A RP+ V L+AV K + + + G + F EN QE
Sbjct: 8 LEKRLAHVKQMLSEAEEKAGRPQGCVKLLAVGKTFNQEALLECARAGALAFGENYAQEGC 67
Query: 63 KKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K R E ++ FIG LQ+NK + FD ++TV R + A LS +
Sbjct: 68 TKIDWFRTNHPELHLEWHFIGPLQANKSRMVAERFDWVQTVDRLRIAERLSAQRPDNLPP 127
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK-------- 171
L V I+VN E KSGI P + + +L + GLM IP +
Sbjct: 128 LNVLIEVNVDAEASKSGISPEELPALAAAVSELPRLRLRGLMSIPAPAETYEGKMKPLLA 187
Query: 172 --PHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F E + + LSMGM+ D A+ +G+T VRIGS IFG R
Sbjct: 188 MASLFKAFQE--KYPQADTLSMGMSADLTEAVEAGSTMVRIGSAIFGPRSYS 237
>gi|329946945|ref|ZP_08294357.1| pyridoxal phosphate enzyme, YggS family [Actinomyces sp. oral taxon
170 str. F0386]
gi|328526756|gb|EGF53769.1| pyridoxal phosphate enzyme, YggS family [Actinomyces sp. oral taxon
170 str. F0386]
Length = 258
Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats.
Identities = 68/226 (30%), Positives = 103/226 (45%), Gaps = 10/226 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ L +I+ +A A R + L+ VSK V +++R A + G ENK+QEA++
Sbjct: 5 RHNLAAVHARIDAAAERAGRDAAEIRLLPVSKTVPEERLRTAFAAGITQMGENKVQEAQR 64
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K L + IG LQ+NK + + D + + + A L + R L VY
Sbjct: 65 KSENLAD-LGISWSVIGHLQTNKAKNVAAFADEFQALDSLRLAGALDRRLQAAGRGLDVY 123
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
+QVN+ E K G+ P+ DF+ L V GLM + + F ++ +
Sbjct: 124 VQVNSSGEPSKFGLEPDDVADFLTALPAYSSLQVRGLMTLAANTSEEARVRECFRIMRRL 183
Query: 181 AR-ECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGM+ DFE AI G+T VR+G IFG R
Sbjct: 184 RDAALQAGTVGDGLLSMGMSGDFEAAIEGGSTCVRVGQAIFGARAT 229
>gi|254437301|ref|ZP_05050795.1| conserved hypothetical protein TIGR00044 [Octadecabacter
antarcticus 307]
gi|198252747|gb|EDY77061.1| conserved hypothetical protein TIGR00044 [Octadecabacter
antarcticus 307]
Length = 217
Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats.
Identities = 91/213 (42%), Positives = 120/213 (56%), Gaps = 2/213 (0%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ ++IE + A R S L+AVSK+ +K ++ L G F EN++QEA KW
Sbjct: 3 LQEIIKRIEAAEAKAGRSVGSTKLIAVSKVQPNKLVQTILEQGHRTFGENRVQEAAVKWP 62
Query: 67 PLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
R+++D + L IG LQ+NK + L I+T+ R K A + + +YIQ
Sbjct: 63 AFREQFDGIDLHIIGPLQTNKARAAMELAQAIQTLDRIKLARTFARLAQEMGACPDIYIQ 122
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
VNTG E QK+G++P+ F+ L V GLMCIPPA P HF LL EIA
Sbjct: 123 VNTGAEPQKAGVLPDDADAFIKEAVALD-LPVAGLMCIPPADEEPSLHFALLGEIAARNG 181
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ DFE A+A GAT VR+GS IFG R
Sbjct: 182 LNGLSMGMSGDFETAVAHGATLVRVGSAIFGSR 214
>gi|290969126|ref|ZP_06560654.1| pyridoxal phosphate enzyme, YggS family [Megasphaera genomosp.
type_1 str. 28L]
gi|290780846|gb|EFD93446.1| pyridoxal phosphate enzyme, YggS family [Megasphaera genomosp.
type_1 str. 28L]
Length = 227
Score = 249 bits (638), Expect = 2e-64, Method: Composition-based stats.
Identities = 70/228 (30%), Positives = 106/228 (46%), Gaps = 12/228 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ ++KI+ +A D ++LVAV+K +R A S G EN++QEA
Sbjct: 2 IKENIEFVRKKIQAAADRVGVN-DKITLVAVTKNHPVSCMREAASAGITQVGENRVQEAL 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + IG LQ+NK V+ FD+I +V E + + + PV
Sbjct: 61 QKQKDFPNN-TLTWHLIGHLQTNKAKAAVAHFDLIHSVDSEHLLLAVQKAAAQIGKIQPV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLSE 179
+QVN E K G+ + L + V+G MCI P + +P F +
Sbjct: 120 LLQVNVAREESKYGMAVEEFPHICRLASSLSHVCVQGFMCIAPNVAQVEEVRPVFRIAHA 179
Query: 180 IARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + K + LSMGMT DFE+AI GA VR+G+ IFGER
Sbjct: 180 LYEDMKQKFPTGQIRYLSMGMTHDFEIAIEEGANIVRVGTAIFGERNY 227
>gi|242089533|ref|XP_002440599.1| hypothetical protein SORBIDRAFT_09g003850 [Sorghum bicolor]
gi|241945884|gb|EES19029.1| hypothetical protein SORBIDRAFT_09g003850 [Sorghum bicolor]
Length = 243
Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats.
Identities = 75/210 (35%), Positives = 101/210 (48%), Gaps = 16/210 (7%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
SV +VAVSK IR G F EN +QE K L + D++ FIG+LQS
Sbjct: 32 PGSVRVVAVSKTKPVPVIRGVYDAGHRCFGENYVQELIDKAPQLPE--DIEWHFIGNLQS 89
Query: 85 NKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FLPVYIQVNTGYEIQKSGIMPN 140
NK + V D++E+V EK AS L + R L V +QVNT E K G+ P+
Sbjct: 90 NKARALLAGVPNLDMVESVDDEKIASRLDRVVADLGRKPLKVLVQVNTSGEESKFGVDPS 149
Query: 141 QTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPH-FYLLSE----IARECKLT----KLS 190
+ + L GLM I + P F L+ + +E + +LS
Sbjct: 150 GCVELAKHVKLNCPNLVFSGLMTIGMLDYSSTPENFKTLANCREGVCKELGIPEEQCELS 209
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERPC 220
MGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 210 MGMSADFEQAIEMGSTNVRVGSTIFGAREY 239
>gi|78044191|ref|YP_360862.1| hypothetical protein CHY_2043 [Carboxydothermus hydrogenoformans
Z-2901]
gi|77996306|gb|ABB15205.1| conserved hypothetical protein TIGR00044 [Carboxydothermus
hydrogenoformans Z-2901]
Length = 224
Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats.
Identities = 74/232 (31%), Positives = 122/232 (52%), Gaps = 20/232 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + KLQ K++I RP V ++ V+K VD ++I+ A G F ENK+QE
Sbjct: 1 MEISQKLQEVKREIAKI-----RPGSKVKILGVTKTVDVERIKEASKAGVEAFGENKVQE 55
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L +++ FIG LQ+NK+++I+ +I ++ R A ++ + +
Sbjct: 56 FLEKYEKLP---NLEWHFIGHLQTNKINKILGKVVLIHSLDRYNLAEEINKRAYRLGINV 112
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYL 176
PV ++VN E K G+MP + +DF R+ L V GLM + P + NP +P F
Sbjct: 113 PVLLEVNMAKEETKFGLMPEEVEDFYFEVRENFKNLEVSGLMTVAPYVENPEEVRPVFRA 172
Query: 177 LSEIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E+ + K LSMGM+ D+++A+ GA +R+G+ +FGER
Sbjct: 173 MRELFLKLKAKDPENDKFQYLSMGMSNDYKVAVEEGANIIRLGTLLFGERKY 224
>gi|225018389|ref|ZP_03707581.1| hypothetical protein CLOSTMETH_02336 [Clostridium methylpentosum
DSM 5476]
gi|224948807|gb|EEG30016.1| hypothetical protein CLOSTMETH_02336 [Clostridium methylpentosum
DSM 5476]
Length = 236
Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats.
Identities = 70/225 (31%), Positives = 116/225 (51%), Gaps = 10/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + + +Q++ +A A R + L+AV+K V + + VA+ CG + EN+ QE
Sbjct: 13 SIRENVALVQQRVVRAAERAGRSPADIRLMAVTKTVAPEYVNVAVECGVNLLGENRAQEL 72
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K + + FIG LQ NKV I+ +IE+V A + + + +P
Sbjct: 73 LEKHSVYTLGPEC-IHFIGHLQRNKVKSIIDKVSMIESVDSVSLAEEIDRQASRIGVVMP 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V ++VN G + KSG P ++ + + + V+GLM IPP N + +F + +++
Sbjct: 132 VLLEVNIGLQPTKSGFAPEALEEGLRAVSRLKNIAVKGLMAIPPK-DNTQEYFQKMQQLS 190
Query: 182 --------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ D+ELAIA GA VR+GS +FG+R
Sbjct: 191 VDIAGKNIDNSTMEYLSMGMSADYELAIACGANIVRVGSALFGQR 235
>gi|261419328|ref|YP_003253010.1| alanine racemase domain protein [Geobacillus sp. Y412MC61]
gi|297530702|ref|YP_003671977.1| alanine racemase domain protein [Geobacillus sp. C56-T3]
gi|319766144|ref|YP_004131645.1| alanine racemase domain protein [Geobacillus sp. Y412MC52]
gi|261375785|gb|ACX78528.1| alanine racemase domain protein [Geobacillus sp. Y412MC61]
gi|297253954|gb|ADI27400.1| alanine racemase domain protein [Geobacillus sp. C56-T3]
gi|317111010|gb|ADU93502.1| alanine racemase domain protein [Geobacillus sp. Y412MC52]
Length = 224
Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats.
Identities = 68/228 (29%), Positives = 109/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + L +++IE + R V +VAV+K VD+K+ L G EN+ +
Sbjct: 1 MTVRDNLAAIRREIEAACARVGRDPAGVRIVAVTKYVDAKRALEVLDAGIADLGENRSDQ 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + + FIG+LQS KV +I+ D I ++ R A + + R +
Sbjct: 61 LIEKHARIGNQ--ATWHFIGTLQSRKVKDIIDKVDYIHSLDRLSLAKEIEKRAV---RPV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K G+ P +T F+ R ++ V GLM + P G+ + F L
Sbjct: 116 KCFVQVNVSGEATKHGLAPEETIPFIEQLRAFSRIEVVGLMTMAPHTGDEAILRACFRQL 175
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ + T+LSMGM+ D+ +AI GAT VRIGS + G
Sbjct: 176 RMLKERVQALGMAHAPCTELSMGMSNDYTIAIEEGATFVRIGSALVGS 223
>gi|134280136|ref|ZP_01766847.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
305]
gi|134248143|gb|EBA48226.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
305]
Length = 232
Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats.
Identities = 81/230 (35%), Positives = 112/230 (48%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHRRIDEAARAAGRAPGSVALLAVSKTFPADAVRAAYAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 61 ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V +QVN E KSG+ P L + GLM IP +P+
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLRGLMAIPEPETDPEAKRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + ++ + L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 181 ALHALFQQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDY 230
>gi|297583957|ref|YP_003699737.1| alanine racemase domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297142414|gb|ADH99171.1| alanine racemase domain protein [Bacillus selenitireducens MLS10]
Length = 226
Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats.
Identities = 65/227 (28%), Positives = 115/227 (50%), Gaps = 15/227 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L K KI+ + + R + V ++AV+K V +++ A+ G EN++++
Sbjct: 3 TVSKQLADVKAKIKKACERSGRQEQDVHIIAVTKYVTTERAIEAVDAGVRHVGENRVEDY 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++K+ + + FIGSLQS KV ++++ FD + ++ R A L + + +
Sbjct: 63 REKYDEIGTR--AEWHFIGSLQSKKVKKMINEFDYLHSLDRLSLAKELDKRA--EGKKVK 118
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
++QVN E K+GI P++ F+ Q L V GLM + P N ++ SE+
Sbjct: 119 CFVQVNVSGESSKAGISPSEVLPFIKELEQYQALEVSGLMTMAPLTENESELRHVFSELR 178
Query: 182 R-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ +LSMGM+ D+E+A+ GAT VRIGS + G
Sbjct: 179 KLRDLIQAESLPHAPCKELSMGMSNDYEIAVEEGATFVRIGSALVGS 225
>gi|148232210|ref|NP_001091336.1| proline synthetase co-transcribed homolog [Xenopus laevis]
gi|125858539|gb|AAI29542.1| LOC100037173 protein [Xenopus laevis]
Length = 261
Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats.
Identities = 79/244 (32%), Positives = 118/244 (48%), Gaps = 28/244 (11%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKR----PKDSVSLVAVSKMVDSKKIRVALSCGQVIFA 54
MS +G LQ +++++++A A+R P LVAVSK + A GQ F
Sbjct: 1 MSEEIGKALQSVRERVQHAA--ARRIKTLPAIDPRLVAVSKTKPVDVVIEAYRHGQRYFG 58
Query: 55 ENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLL 109
EN +QE +K L D++ FIG LQ ++++ V ++ET+ K A +
Sbjct: 59 ENYVQELAEKASDPSLLSSCPDIKWHFIGHLQKTHINKLVGVPNLYILETIDSVKLADKV 118
Query: 110 SLEMIKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPA 166
+ K+ L V +QVNT E K G+ P +T V R+ L GLM I
Sbjct: 119 NSSWQKKGSSEKLKVMVQVNTSSEDSKYGLAPAETAGLVKHIREKCPSLEFVGLMTIGSF 178
Query: 167 MGN----PKPHFYLL--------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ P P F +L ++ + +LSMGM+ DFE AI G+T+VRIGS +
Sbjct: 179 GYDLTQGPNPDFQMLLAQRDMVCEKLGLQIDSVELSMGMSSDFEHAIEVGSTNVRIGSTL 238
Query: 215 FGER 218
FG+R
Sbjct: 239 FGDR 242
>gi|114566485|ref|YP_753639.1| hypothetical protein Swol_0953 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337420|gb|ABI68268.1| protein of unknown function UPF0001 [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 225
Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats.
Identities = 76/224 (33%), Positives = 112/224 (50%), Gaps = 14/224 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ N + K KIE +A + R V+LVAVSK VD + +R A S G F EN++ E
Sbjct: 4 IKNNWESIKNKIEQAAFKSGRKASEVTLVAVSKTVDIETVRRAHSLGINDFGENRVNELL 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + IG LQ+NKV +IV +I ++ R + A L + + +PV
Sbjct: 64 SKRESLP---GINWHLIGRLQTNKVKDIVGRTTLIHSLDRWRLAQELDKRGLVLEQEVPV 120
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQ+N E QK+G P + + + Q L + GLM + P +P +P F L +
Sbjct: 121 LIQLNISGEEQKAGFKPTELGEVLAAAEQFKALRIYGLMTMAPLDPDPERARPLFRELFQ 180
Query: 180 IAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + L LSMGM++D+ +AI GA VRIGS +F
Sbjct: 181 LRQKFIDRNYKNVNLKYLSMGMSQDYAVAIEEGANLVRIGSALF 224
>gi|296331114|ref|ZP_06873588.1| hypothetical protein BSU6633_08431 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305674269|ref|YP_003865941.1| hypothetical protein BSUW23_07920 [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296151758|gb|EFG92633.1| hypothetical protein BSU6633_08431 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305412513|gb|ADM37632.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 230
Score = 249 bits (637), Expect = 2e-64, Method: Composition-based stats.
Identities = 63/227 (27%), Positives = 106/227 (46%), Gaps = 16/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ ++I + + R D V+++AV+K V ++ + A+ G EN+ E
Sbjct: 1 MRVVEYLRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ + + FIGSLQS K +V+ I ++ R A + +
Sbjct: 61 LLRKQEMIKGDP--EWHFIGSLQSRKAKAVVNSVSYIHSLDRLSLAKEIEKRAEG---TV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVNT E K G+ + F+ + V GLM + P + + F L
Sbjct: 116 QCFVQVNTSLEPSKHGMKKEEVIPFIQELSGFEHIVVAGLMTMAPLTDDQDEIRSCFRAL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
E+ + + T+LSMGM+ DFE+AI GAT +RIGS + G
Sbjct: 176 RELRDQVQELKQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVG 222
>gi|34541703|ref|NP_906182.1| hypothetical protein PG2126 [Porphyromonas gingivalis W83]
gi|34398021|gb|AAQ67081.1| conserved hypothetical protein TIGR00044 [Porphyromonas gingivalis
W83]
Length = 224
Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats.
Identities = 72/211 (34%), Positives = 105/211 (49%), Gaps = 17/211 (8%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V L AVSK +++ A GQ +FAE+++QE K + DV+ FIG LQ+
Sbjct: 16 PQGVRLAAVSKFHPVEELMEAYEAGQRVFAESRVQELMSKVEAMPD--DVEWHFIGPLQT 73
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV IV +I++VS K +S + K R +PV ++V+ E KSG P +
Sbjct: 74 NKVKYIVPFISMIQSVSSLKLFDEISRQASKVGRTVPVLLEVHIASEDTKSGFTPEELPQ 133
Query: 145 FVILCRQK---YQLNVEGLMCIPPAMGN---PKPHFYLLSEIARECK---------LTKL 189
+ + + + GLM + + + F L+ + RE K +L
Sbjct: 134 VLEAVLARGSDTGVKIAGLMGMATFTDDREQIRREFRRLASLFREMKERFFSDSADFCEL 193
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERPC 220
SMGM+ DFELAI G+T VRIG+ IFGER
Sbjct: 194 SMGMSGDFELAIEEGSTIVRIGTTIFGERRY 224
>gi|188994039|ref|YP_001928291.1| hypothetical protein PGN_0175 [Porphyromonas gingivalis ATCC 33277]
gi|118200279|dbj|BAF37085.1| hypothetical protein [Porphyromonas gingivalis]
gi|188593719|dbj|BAG32694.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
33277]
Length = 224
Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats.
Identities = 72/211 (34%), Positives = 105/211 (49%), Gaps = 17/211 (8%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V L AVSK +++ A GQ +FAE+++QE K + DV+ FIG LQ+
Sbjct: 16 PQGVRLAAVSKFHPVEELMEAYEAGQRVFAESRVQELMSKVEAMPD--DVEWHFIGPLQT 73
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV IV +I++VS K +S + K R +PV ++V+ E KSG P +
Sbjct: 74 NKVKYIVPFISMIQSVSSLKLFDEISRQASKVGRTVPVLLEVHIASEDTKSGFTPEELPQ 133
Query: 145 FVILCRQK---YQLNVEGLMCIPPAMGN---PKPHFYLLSEIARECK---------LTKL 189
+ + + + GLM + + + F L+ + RE K +L
Sbjct: 134 VLEAVLARGSDTGVKIAGLMGMATFTDDREQIRREFRRLASLFREMKERFFSDSADFCEL 193
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERPC 220
SMGM+ DFELAI G+T VRIG+ IFGER
Sbjct: 194 SMGMSGDFELAIEEGSTIVRIGTTIFGERRY 224
>gi|294502896|ref|YP_003566958.1| hypothetical protein YPZ3_0786 [Yersinia pestis Z176003]
gi|262360931|gb|ACY57652.1| hypothetical protein YPD4_0743 [Yersinia pestis D106004]
gi|262364871|gb|ACY61428.1| hypothetical protein YPD8_0738 [Yersinia pestis D182038]
gi|294353355|gb|ADE63696.1| hypothetical protein YPZ3_0786 [Yersinia pestis Z176003]
Length = 202
Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats.
Identities = 66/196 (33%), Positives = 92/196 (46%), Gaps = 8/196 (4%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
+AVSK I A++ GQ F EN +QE K ++ FIG LQSNK +
Sbjct: 2 LAVSKTKPVAAIEKAIAAGQYAFGENYVQEGVDKIHSFVDNKTLEWHFIGPLQSNKSRLV 61
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
F TV R K A LS + L V IQ+N E K+GI ++
Sbjct: 62 AENFAWCHTVDRLKIAQRLSAQRPAAMPALNVLIQINISDEQSKAGISLSELPALADSIS 121
Query: 151 QKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSMGMTRDFELAIA 202
L + GLM IP + + + +++ AR ++ LSMGMT D + AI+
Sbjct: 122 TLPNLCLRGLMAIPAPEHDYQRQLAVFTQMNQAFLTLKARYPQIDTLSMGMTDDMDAAIS 181
Query: 203 SGATSVRIGSGIFGER 218
+G+T VRIG+ IFG R
Sbjct: 182 AGSTLVRIGTAIFGAR 197
>gi|329121443|ref|ZP_08250067.1| cell division protein YlmE [Dialister micraerophilus DSM 19965]
gi|327469358|gb|EGF14828.1| cell division protein YlmE [Dialister micraerophilus DSM 19965]
Length = 233
Score = 249 bits (636), Expect = 2e-64, Method: Composition-based stats.
Identities = 66/232 (28%), Positives = 116/232 (50%), Gaps = 17/232 (7%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPK--DSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
MS + ++ ++++E++ KR V+LVAV+K ++ A+ CG EN+
Sbjct: 1 MSEIEKRIADVRKRMEDA---KKRSPYKQDVTLVAVTKFHSLAEMEEAIDCGITYVGENR 57
Query: 58 LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+QE ++K+ L+K V G LQ NKV +++++ +I + ++
Sbjct: 58 VQEMEQKYRLLQK--PVHWNLQGHLQKNKVKKVIAMDCLIHSGDSLSILKEINKRAAAIG 115
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN--PKPHFY 175
+ V ++ N E K G+ P + ++ V L ++ + V GLMC+ P G +P F
Sbjct: 116 KVQDVLLEFNISGEETKHGLKPEEFEEAVQLAKELPNICVRGLMCMAPEEGEDVIRPVFK 175
Query: 176 LLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ + K ++ LSMGM+ DFE+AI G+ VR+G+ IFG R
Sbjct: 176 KGHEMWEKLKEYFPKGQISILSMGMSGDFEIAIEEGSNMVRVGTAIFGARDY 227
>gi|212639643|ref|YP_002316163.1| putative enzyme with a TIM-barrel fold [Anoxybacillus flavithermus
WK1]
gi|212561123|gb|ACJ34178.1| Predicted enzyme with a TIM-barrel fold [Anoxybacillus flavithermus
WK1]
Length = 233
Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats.
Identities = 64/228 (28%), Positives = 110/228 (48%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +LQ +Q I ++ R V +VAV+K V + + A+ G V E++
Sbjct: 7 MSVKQRLQTIQQHIADACEKTGRNASDVQIVAVTKYVSIARAKEAIDAGIVHLGESRTDG 66
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + KE FIG+LQS KV +I+ D + ++ R A ++ +R +
Sbjct: 67 FLQKYETIGKE--ATWHFIGTLQSRKVKQIIDYVDYVHSLDRLSLAEEINKRA---NRMI 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K G+ P F+ ++ V GLM + P + + F L
Sbjct: 122 KCFVQVNVSGEQSKHGLAPKDVLPFIETLSAFSRIEVVGLMTMAPYTDDEATIRRCFRTL 181
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E+ + + T+LSMGM+ D+ +A+ GAT +R+G+ + GE
Sbjct: 182 RELKEQVQEKQLPHAPCTQLSMGMSNDYVIAVEEGATFLRLGTCLVGE 229
>gi|307110697|gb|EFN58933.1| hypothetical protein CHLNCDRAFT_48564 [Chlorella variabilis]
Length = 223
Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats.
Identities = 76/209 (36%), Positives = 100/209 (47%), Gaps = 18/209 (8%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
LVAVSK ++ +R A G +F EN +QE K L + D FIG LQSNKV
Sbjct: 17 LVAVSKTKPAEAVREAYEAGHRVFGENYVQELADKAPLLPQ--DCAWHFIGHLQSNKVKA 74
Query: 90 I---VSLFDVIETVSREKTASLLSLEMIKQSR-FLPVYIQVNTGYEIQKSGIMPNQTKDF 145
+ V ++ETV K AS L + R L V++QVNT E K G+ P
Sbjct: 75 LLEAVPNLALLETVDSAKLASKLDSTVASLGRPPLAVFVQVNTSGEESKYGVEPQDCLAL 134
Query: 146 VILC-RQKYQLNVEGLMCIPPAMGNPKPH-FYLLSEIAR--------ECKLTKLSMGMTR 195
Q L + GLM I +P F L++ R + +LSMGM+
Sbjct: 135 ARHIHEQCPHLRLAGLMTIGMPDYTSRPENFRCLADCRRAVCAALGLQEGDLELSMGMSG 194
Query: 196 DFELAIASGATSVRIGSGIFGER--PCQT 222
DFE AI G+T+VR+GS IFG R P +
Sbjct: 195 DFEAAIEMGSTNVRVGSTIFGARQYPAKA 223
>gi|225024179|ref|ZP_03713371.1| hypothetical protein EIKCOROL_01049 [Eikenella corrodens ATCC
23834]
gi|224943204|gb|EEG24413.1| hypothetical protein EIKCOROL_01049 [Eikenella corrodens ATCC
23834]
Length = 234
Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats.
Identities = 75/226 (33%), Positives = 106/226 (46%), Gaps = 13/226 (5%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQEAKKK 64
L + +I +A A RP L+AVSK + +R+ Q F EN LQE ++K
Sbjct: 9 NLHAVRARIWAAAEAAGRP--EPELIAVSKTFPAADVRLLCQKSAQRDFGENYLQEFEEK 66
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
L D+ IG +QSNK + TV REK A LS + + L V I
Sbjct: 67 SSELADIPDICWHIIGHIQSNKSRIAAERAHWVHTVDREKIARRLSDQRPETMPPLQVLI 126
Query: 125 QVNTGYEIQKSGIMPNQ--TKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSE 179
+VN G E K G+ P + + +L + GLMC+ + + F ++E
Sbjct: 127 EVNIGGEDVKHGVPPQEETLSELAFQVASLPRLKLRGLMCVARLGSSEEELRQQFGRMNE 186
Query: 180 I-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ A+ + LSMGM+ D E A+A GAT VRIGS IFG+R
Sbjct: 187 LLQFLQAQGLDVDVLSMGMSDDLETAVACGATHVRIGSAIFGQRDY 232
>gi|126439936|ref|YP_001060310.1| hypothetical protein BURPS668_3299 [Burkholderia pseudomallei 668]
gi|126451773|ref|YP_001067570.1| hypothetical protein BURPS1106A_3333 [Burkholderia pseudomallei
1106a]
gi|167920374|ref|ZP_02507465.1| hypothetical protein BpseBC_17639 [Burkholderia pseudomallei
BCC215]
gi|237813700|ref|YP_002898151.1| pyridoxal phosphate enzyme, YggS family [Burkholderia pseudomallei
MSHR346]
gi|242315201|ref|ZP_04814217.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
1106b]
gi|254180739|ref|ZP_04887337.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
1655]
gi|126219429|gb|ABN82935.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
668]
gi|126225415|gb|ABN88955.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
1106a]
gi|184211278|gb|EDU08321.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
1655]
gi|237506063|gb|ACQ98381.1| pyridoxal phosphate enzyme, YggS family [Burkholderia pseudomallei
MSHR346]
gi|242138440|gb|EES24842.1| conserved hypothetical protein TIGR00044 [Burkholderia pseudomallei
1106b]
Length = 232
Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats.
Identities = 81/230 (35%), Positives = 111/230 (48%), Gaps = 10/230 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHRRIDEAARAAGRAPGSVALLAVSKTFPADAVRAAYAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 61 ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V +QVN E KSG+ P L + GLM IP +P+
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADAAGLARAVAALPALRLRGLMAIPEPETDPEAKRAPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + + + L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 181 ALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDY 230
>gi|15838318|ref|NP_299006.1| hypothetical protein XF1717 [Xylella fastidiosa 9a5c]
gi|9106783|gb|AAF84526.1|AE003995_8 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 266
Score = 249 bits (636), Expect = 3e-64, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 102/228 (44%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L +I + R SV+L+ VSK VD IR++ G ENK Q+A
Sbjct: 28 DIRSNLTKVYSRIIAACQRVDRHPSSVTLLPVSKTVDEVHIRLSYEAGCRKLGENKAQDA 87
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW + D+ IG LQ+NK + + + + A L + + R L
Sbjct: 88 YHKWEAMSDLTDLHWSVIGHLQTNKAKLVARFASEFQALDSLRVAEALERRLQIEGRSLD 147
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V IQVNT E K G+ P + FV L V GLM + G+ + F L
Sbjct: 148 VLIQVNTSGETNKYGLPPEEVVRFVQALSAYPALRVRGLMTLALLSGDTSRVRQCFTQLR 207
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +T+LSMGM+ D E+AI GAT VR+G I+G R
Sbjct: 208 ILRDRIQQASPQGHHITELSMGMSGDLEIAIEEGATVVRVGQAIYGAR 255
>gi|186682117|ref|YP_001865313.1| alanine racemase domain-containing protein [Nostoc punctiforme PCC
73102]
gi|186464569|gb|ACC80370.1| alanine racemase domain protein [Nostoc punctiforme PCC 73102]
Length = 222
Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats.
Identities = 76/228 (33%), Positives = 111/228 (48%), Gaps = 21/228 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ + + SV L+AVSK V + IR A S G FAE+++QEA
Sbjct: 4 SISERIVSIRSSL----------PTSVKLIAVSKQVPVEAIRFAYSAGIRDFAESRIQEA 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D+ FIG LQSNK + + F I +V K A L +
Sbjct: 54 ASKQAELHDLPDITWHFIGHLQSNKAKKAIEQFPWIHSVDNLKLAQRLDQLAQQLRVSPQ 113
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM-GNPK--PHFYLLS 178
V +QV + KSG + + Q L ++GLM IPP+ NP+ F L
Sbjct: 114 VCLQVKILPDPNKSGWSVPELLADLPTLDQYKNLQIQGLMTIPPSGLNNPEILNVFNLNR 173
Query: 179 EIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A+ K+ +LSMGM+ D+ELA+ +GAT VR+G+ +FG+R
Sbjct: 174 ELAKKIQEQNWSHIKMQQLSMGMSGDYELAVQAGATMVRLGTILFGDR 221
>gi|195108629|ref|XP_001998895.1| GI23376 [Drosophila mojavensis]
gi|193915489|gb|EDW14356.1| GI23376 [Drosophila mojavensis]
Length = 255
Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats.
Identities = 76/244 (31%), Positives = 115/244 (47%), Gaps = 28/244 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
+ LQ ++IE+ +L RP++ LVAVSK + I A + GQ F EN
Sbjct: 10 DIAAGLQHVLKRIES--VLQSRPQEINTPKPLLVAVSKTKPVECIIEAYNAGQRHFGENY 67
Query: 58 LQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLE 112
+QE +K L + D++ IG LQSNK++++ + +I+TV EK A+ +
Sbjct: 68 VQELVEKSQHPDILAQCPDIKWHLIGHLQSNKINKVLKLPNLYMIQTVDSEKLANGIDAA 127
Query: 113 MIKQSR----FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAM 167
K+ L V +QVNT E KSG+ + L G+M I
Sbjct: 128 WAKRQPEPTEPLRVLVQVNTSGEDVKSGVDASAAPSLYQYISDNLKHLKPVGIMTIGAYG 187
Query: 168 GN----PKPHFYLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ P P F L ++ RE ++SMGM+ D++ AI G+T VR+G+ IF
Sbjct: 188 FDYSNGPNPDFVALLQVQREICKANSLPADAVQVSMGMSNDYDRAIEMGSTIVRVGTAIF 247
Query: 216 GERP 219
G RP
Sbjct: 248 GHRP 251
>gi|313891355|ref|ZP_07824971.1| pyridoxal phosphate enzyme, YggS family [Dialister microaerophilus
UPII 345-E]
gi|313120130|gb|EFR43306.1| pyridoxal phosphate enzyme, YggS family [Dialister microaerophilus
UPII 345-E]
Length = 233
Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats.
Identities = 66/232 (28%), Positives = 116/232 (50%), Gaps = 17/232 (7%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPK--DSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
MS + ++ ++++E++ KR V+LVAV+K ++ A+ CG EN+
Sbjct: 1 MSEIEKRIADVRKRMEDA---KKRSPYKQDVTLVAVTKFHSLAEMEEAIDCGITYVGENR 57
Query: 58 LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+QE ++K+ L+K V G LQ NKV +++++ +I + ++
Sbjct: 58 VQEMEQKYRLLQK--PVHWNLQGHLQKNKVKKVIAMDCLIHSGDSLSILKEINKRAAAIG 115
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN--PKPHFY 175
+ V ++ N E K G+ P + ++ V L ++ + V GLMC+ P G +P F
Sbjct: 116 KVQDVLLEFNISGEETKHGLKPEEFEEAVQLAKELPNICVRGLMCMAPEEGEDVIRPVFK 175
Query: 176 LLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ + K ++ LSMGM+ DFE+AI G+ VR+G+ IFG R
Sbjct: 176 KGHEMWEKLKEYFPKGQVSILSMGMSGDFEIAIEEGSNMVRVGTAIFGARDY 227
>gi|188588531|ref|YP_001921583.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum E3
str. Alaska E43]
gi|188498812|gb|ACD51948.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum E3
str. Alaska E43]
Length = 224
Score = 248 bits (635), Expect = 3e-64, Method: Composition-based stats.
Identities = 75/232 (32%), Positives = 109/232 (46%), Gaps = 22/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ K +I +V L+AVSK + ++ A G F ENK+QE
Sbjct: 1 MGIKENIEKLKLEI----------PKNVELLAVSKTKPIEDLKQAYEAGIRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L K D++ IG+LQ+NKV +V +I ++S K + + K +
Sbjct: 51 LVSKEEVLPK--DIRWHLIGNLQTNKVKYLVDKVYLIHSLSSIKLLNEIEKVFEKNNTVA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG--NPKPHFYLLS 178
V IQ+N G E KSGI+ + + + + +G+M I P N + +F
Sbjct: 109 NVLIQINIGREESKSGILKEELQGIIEAIEACNYVLAKGIMVIIPKGDEKNNRKYFKETK 168
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
EI + K+ LSMGMT DF AI G+T VRIG GIFGER T
Sbjct: 169 EIFDYLKVRKYKNIKMEVLSMGMTHDFNEAIEEGSTLVRIGQGIFGERNYST 220
>gi|190573115|ref|YP_001970960.1| hypothetical protein Smlt1088 [Stenotrophomonas maltophilia K279a]
gi|190011037|emb|CAQ44646.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
Length = 225
Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats.
Identities = 72/221 (32%), Positives = 102/221 (46%), Gaps = 11/221 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +A A RP L+AVSK ++ + + GQ F EN +QEA K
Sbjct: 5 LPQILSNLHAAAEAAGRP--DPRLLAVSKTQPAESVAALAAQGQHAFGENYVQEALAKMQ 62
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L+ ++ IG LQSNK + S FD +++V R K + L+ L V IQV
Sbjct: 63 ALQ-HLALEWHLIGHLQSNKAEAVASHFDWVQSVDRPKLVTALARHRPAARGPLNVLIQV 121
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIARE 183
N E K G P + + L + GLM IP P + F + + +
Sbjct: 122 NIDDESSKHGCAPEEVDALAAAIAAEPTLRLRGLMAIPAPWPEAERRRDAFVRMRTLFQS 181
Query: 184 C-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ LSMGM+ D+ AIA GAT VRIG+ +FG RP
Sbjct: 182 LAAQHAQIDTLSMGMSSDYAEAIAEGATLVRIGTALFGARP 222
>gi|118101365|ref|XP_424381.2| PREDICTED: similar to Proline synthetase associated [Gallus gallus]
Length = 276
Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats.
Identities = 83/244 (34%), Positives = 119/244 (48%), Gaps = 26/244 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
LG L+ ++++ +A A+RPK LVAVSK ++ + A S GQ F EN +
Sbjct: 12 LGPALRAVTEQVQQAA--ARRPKGLPDMQPRLVAVSKTKPAEMVLDAYSHGQRSFGENYV 69
Query: 59 QEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEM 113
QE +K L +++ FIG LQ + V+++ V ++ETV K A ++
Sbjct: 70 QELLEKASDSRILSSCPEIKWHFIGHLQKSNVNKLIAVPNLFMLETVDSVKLADRVNSSW 129
Query: 114 IKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCIPPAMGN- 169
K+ L V +QVNT E K G+ P T V + L GLM I +
Sbjct: 130 QKKGSPQKLKVMVQVNTSGEDSKHGLPPRDTTAAVEHVINKCPSLEFVGLMTIGSIGHDL 189
Query: 170 ---PKPHFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P P F +L + +E KL +LSMGM+ DF+ AI G+T+VRIGS IFGER
Sbjct: 190 SKGPNPDFQVLLSLRQEVCEKLNLPIEKVELSMGMSTDFQHAIEVGSTNVRIGSTIFGER 249
Query: 219 PCQT 222
Sbjct: 250 DYSN 253
>gi|254292388|ref|YP_003058411.1| alanine racemase domain protein [Hirschia baltica ATCC 49814]
gi|254040919|gb|ACT57714.1| alanine racemase domain protein [Hirschia baltica ATCC 49814]
Length = 228
Score = 248 bits (635), Expect = 4e-64, Method: Composition-based stats.
Identities = 91/219 (41%), Positives = 136/219 (62%), Gaps = 1/219 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+S+ + +I+ +A+ S++L AVSK+ +I L+ GQ ++ EN++QE
Sbjct: 6 LSISERRADILARIKKTALSKGVDPQSITLTAVSKVQPENRIEDMLAIGQRVYGENRVQE 65
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A ++W +++ D++LR IG LQ+NK E V LFDVIET+ R K A ++ + K +
Sbjct: 66 AFERWGERKQQIPDLKLRLIGPLQTNKAEEAVRLFDVIETIDRLKLAQSIAKAVQKTGKN 125
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+++QVNTG E QK+GI+P + DF+ ++ L + GLMCIPP PHF LL +
Sbjct: 126 PELFVQVNTGEEDQKAGILPGEVDDFLKQIVSEFSLKISGLMCIPPVDEPAGPHFALLRK 185
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IA ++KLSMGM+ DFE AI GAT VR+GS +FGER
Sbjct: 186 IANRNGISKLSMGMSSDFETAIGFGATHVRVGSALFGER 224
>gi|126724360|ref|ZP_01740203.1| alanine racemase domain protein [Rhodobacterales bacterium
HTCC2150]
gi|126705524|gb|EBA04614.1| alanine racemase domain protein [Rhodobacterales bacterium
HTCC2150]
Length = 217
Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats.
Identities = 84/218 (38%), Positives = 118/218 (54%), Gaps = 3/218 (1%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+ +I A S L+AVSK+ ++++ L G +F ENK+QEA KW
Sbjct: 2 AYKEILDRIAAKEKAAGCSGQS-KLIAVSKVQPNERVAAVLDQGHRLFGENKVQEAAGKW 60
Query: 66 IPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
R+++ V + +G +Q+NK + + LF I ++ R K A+ L+ + ++I
Sbjct: 61 PEFREKYGAVDVHLLGPVQTNKARQAMELFQAIHSLDRPKLANTLARLAQELGHCPDLFI 120
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVNTG E QK+GI+P FV CR L V GLMCIPP P PHF L +A+
Sbjct: 121 QVNTGAEPQKAGILPEDADKFVETCRALD-LPVIGLMCIPPFEEPPAPHFVALGHMAKRN 179
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L LSMGM+ DFE AI GAT +R+GS IFG R +
Sbjct: 180 GLACLSMGMSGDFEEAIEHGATHIRVGSAIFGNRDYRA 217
>gi|260826782|ref|XP_002608344.1| hypothetical protein BRAFLDRAFT_126227 [Branchiostoma floridae]
gi|229293695|gb|EEN64354.1| hypothetical protein BRAFLDRAFT_126227 [Branchiostoma floridae]
Length = 295
Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats.
Identities = 80/242 (33%), Positives = 115/242 (47%), Gaps = 26/242 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+G L+ +++ +A AKRP+ LVAV+K + I A GQ F EN +
Sbjct: 12 VGRALRSVLDRVQTAA--AKRPEHLPKVQPRLVAVTKTKPKELILSAYKAGQRHFGENYV 69
Query: 59 QEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEM 113
QE K + + D++ FIG LQ NKV+++ + ++ETV EK A+ ++
Sbjct: 70 QELTDKASDPEIVGQLNDIRWHFIGHLQRNKVNKVTGIPNLYMVETVDSEKLATAINASW 129
Query: 114 IKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCIPPAMGN- 169
K R L V IQVNT E QK G P + D L G+M I +
Sbjct: 130 EKLGRTDRLKVMIQVNTSREEQKHGTSPEKVCDLYKHVVENCPHLQAVGIMTIGVYDYDL 189
Query: 170 ---PKPHFYLLSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P P F +L E + + +LSMGM+ DFE AI G+T++R+GS IFG R
Sbjct: 190 RNGPNPDFQVLLECRTNICQTFNLQPEDVELSMGMSTDFEHAIEVGSTNIRVGSTIFGAR 249
Query: 219 PC 220
Sbjct: 250 QY 251
>gi|312899016|ref|ZP_07758403.1| pyridoxal phosphate enzyme, YggS family [Megasphaera
micronuciformis F0359]
gi|310619923|gb|EFQ03496.1| pyridoxal phosphate enzyme, YggS family [Megasphaera
micronuciformis F0359]
Length = 215
Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats.
Identities = 67/217 (30%), Positives = 105/217 (48%), Gaps = 12/217 (5%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD 73
+ ++ A R D+V+LVAV+K + + A SCG EN+++E K
Sbjct: 1 MASAMARAGR-VDTVTLVAVTKNHPVEDMIEAASCGVTDVGENRVKEGTDKQKAFPDNK- 58
Query: 74 VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ 133
++ IG LQ+NKV + V+ FD+I +V + + + E K + + +QVN E
Sbjct: 59 LKWHLIGHLQTNKVKQAVAHFDLIHSVDSQHLLAAIDKEAEKIGKVQDILLQVNVAREES 118
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIARECK----- 185
K+G + L ++ + V G MC+ P N +P F + + + K
Sbjct: 119 KTGAAVEEFPKLCCLAKEAQHVRVCGFMCMAPNFENVEETRPVFRIAKALYDDMKGKFPD 178
Query: 186 --LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGMT DFE+AI GA VR+G+ IFG R
Sbjct: 179 GQVRYLSMGMTHDFEIAIEEGANIVRVGTAIFGPRNY 215
>gi|118200267|dbj|BAF37074.1| hypothetical protein [Porphyromonas gingivalis]
Length = 224
Score = 248 bits (634), Expect = 4e-64, Method: Composition-based stats.
Identities = 71/211 (33%), Positives = 105/211 (49%), Gaps = 17/211 (8%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V L AVSK +++ A GQ +FAE+++QE K + DV+ FIG LQ+
Sbjct: 16 PQGVRLAAVSKFHPVEELMEAYEAGQRVFAESRVQELMSKVEAMPD--DVEWHFIGPLQT 73
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV IV +I++VS K +S + K R +PV ++V+ E KSG P +
Sbjct: 74 NKVKYIVPFISMIQSVSSLKLFDEISRQASKVGRTVPVLLEVHIASEDTKSGFTPEELPQ 133
Query: 145 FVILCRQK---YQLNVEGLMCIPPAMGN---PKPHFYLLSEIARECK---------LTKL 189
+ + + + GLM + + + F L+ + RE + +L
Sbjct: 134 VLEAVLARGSDTGVKIAGLMGMATFTDDREQIRREFRRLASLFREMRERFFSDSADFCEL 193
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERPC 220
SMGM+ DFELAI G+T VRIG+ IFGER
Sbjct: 194 SMGMSGDFELAIEEGSTIVRIGTTIFGERRY 224
>gi|206900542|ref|YP_002250962.1| hypothetical protein DICTH_1123 [Dictyoglomus thermophilum H-6-12]
gi|206739645|gb|ACI18703.1| conserved hypothetical protein [Dictyoglomus thermophilum H-6-12]
Length = 235
Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats.
Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 10/222 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + +++I A R +++VAVSK V + IR A+ G EN++QEA+
Sbjct: 7 IAENWKKVQERIIKKAEECGRDPSEINVVAVSKGVPPEGIREAVKVGIKAIGENRVQEAE 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KK L + + +G LQ NKV + ++LF +I +V + A L+ K+ + + V
Sbjct: 67 KKIS-LLSDLSCEWHMVGHLQKNKVKKAINLFSLIHSVDTFELAEELNKYAEKEEKEVDV 125
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSE 179
IQ+N E K G + + LNV+GLM I P G+ + F L
Sbjct: 126 LIQLNLSEEPTKYGFKEEEFWKVYEKIFELKNLNVKGLMTIGPLTGDKNEVRKVFRKLYT 185
Query: 180 IARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
I + K L LSMGM+ DFE+AI GA +R+G IF
Sbjct: 186 IWEKLKENTKLSLPYLSMGMSEDFEIAIEEGANLLRLGRIIF 227
>gi|255035778|ref|YP_003086399.1| alanine racemase domain-containing protein [Dyadobacter fermentans
DSM 18053]
gi|254948534|gb|ACT93234.1| alanine racemase domain protein [Dyadobacter fermentans DSM 18053]
Length = 220
Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats.
Identities = 59/230 (25%), Positives = 98/230 (42%), Gaps = 25/230 (10%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L +Q + LVAV+K + + A G +F ENK+QE
Sbjct: 3 SIADNLAQIEQALRK----------ETRLVAVTKTKPTTLLMEAYEAGARLFGENKVQEM 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+ L K D++ IG LQ+NKV + ++ +V K ++ E K R +
Sbjct: 53 VAKYEELPK--DIEWHMIGHLQTNKVKYMAPFVSLVHSVDSFKLLKEINKEARKNDRIID 110
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+Q+ E K G+ ++ + + + GLM + + + F
Sbjct: 111 CLLQIYIAREETKFGLSEDEALALITSPELATLANVRIAGLMGMASNTDDQEAVRSEFRG 170
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L K + +LSMGM+ D+ +A+ G+T VR+GS IFG R
Sbjct: 171 LKSTFEAFKNHENAQVTMRELSMGMSGDYLIAMEEGSTLVRVGSAIFGSR 220
>gi|289741895|gb|ADD19695.1| proline synthetase co-transcribed protein [Glossina morsitans
morsitans]
Length = 250
Score = 248 bits (634), Expect = 5e-64, Method: Composition-based stats.
Identities = 87/247 (35%), Positives = 121/247 (48%), Gaps = 28/247 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
+ LQ ++I+ + RPKD LVAVSK + I A S GQ F EN
Sbjct: 5 DVKAGLQQILKRIDAAYEQ--RPKDLEGGKPFLVAVSKTKPIEMIIDAYSVGQRHFGENY 62
Query: 58 LQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLE 112
+QE K L+K D++ FIG LQ+NKV++I + +I+TV EK A L+
Sbjct: 63 VQELVDKSQHPDILQKCPDIKWHFIGHLQNNKVNKILKLPNIHLIQTVDTEKLADNLNNS 122
Query: 113 MIK----QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAM 167
K + L V IQ+NT E K+GI PN+ ++ L V+G+M I
Sbjct: 123 WRKLEIDNKQPLRVLIQINTSGEDAKNGIEPNEAPRLYKHIKENLTNLQVDGVMTIGAFG 182
Query: 168 GN----PKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ P P F L +I + L ++SMGM+ DFE AI G+T VR+GS IF
Sbjct: 183 HDYTKGPNPDFVCLMQVHRQICEDYHLKPEEVQVSMGMSDDFEKAIEMGSTIVRVGSSIF 242
Query: 216 GERPCQT 222
G R Q+
Sbjct: 243 GHRAKQS 249
>gi|329847397|ref|ZP_08262425.1| Alanine racemase domain protein [Asticcacaulis biprosthecum C19]
gi|328842460|gb|EGF92029.1| Alanine racemase domain protein [Asticcacaulis biprosthecum C19]
Length = 226
Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats.
Identities = 96/208 (46%), Positives = 126/208 (60%), Gaps = 1/208 (0%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
++ + +A RP S L AVSK + I L G F EN++QEA+ +W P+R +
Sbjct: 19 DQMHKALAVAGRPAGSAFLTAVSKTQPWEVIAPVLKAGHRRFGENRVQEARDRWSPVRGD 78
Query: 72 WD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
W ++LR IG LQSNK +E V+ FDVIETV R K A L+ E+ KQ R Y+QVN G
Sbjct: 79 WPGLELRLIGPLQSNKAAEAVAFFDVIETVDRSKIARALADEIQKQGRRPVTYVQVNIGE 138
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLS 190
E QK+G++P + F+ CR L V GLMCIPP G P+F LL +IA + LS
Sbjct: 139 EDQKAGVLPAEADAFIRACRDDCGLEVGGLMCIPPVEGPRGPYFGLLRKIAERNGVAHLS 198
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGM+ DFE A+A GA +R+GS IFG R
Sbjct: 199 MGMSDDFETALAFGANEIRVGSAIFGAR 226
>gi|311029941|ref|ZP_07708031.1| hypothetical protein Bm3-1_05186 [Bacillus sp. m3-13]
Length = 228
Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats.
Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 16/226 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L +Q I N+ R + V ++AV+K V +++ + A++ G EN+
Sbjct: 5 SVESNLSEIQQNIRNACHNVNRSVEEVKIIAVTKYVSTERAQEAINTGVKHLGENRDDGF 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KKW + E +IG+LQS KV I+ D I ++ R+ A + K +
Sbjct: 65 LKKWDAISNE--ATWHYIGTLQSKKVKNIIGKVDYIHSLDRKSLAEEIHKRAEKA---VK 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+IQVN E K G+ P + FV + + + GLM + P + F L
Sbjct: 120 CFIQVNVSGEDSKHGLAPEEVPGFVKTISDLHNIQIVGLMTMAPFTEEEELLRNCFRGLK 179
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ +E + T+LSMGM+ D+++AI GAT +RIGS + G
Sbjct: 180 SLQQEIQSMNLPFAPCTELSMGMSNDYKIAIEEGATFIRIGSALVG 225
>gi|254414846|ref|ZP_05028610.1| conserved hypothetical protein TIGR00044 [Microcoleus
chthonoplastes PCC 7420]
gi|196178335|gb|EDX73335.1| conserved hypothetical protein TIGR00044 [Microcoleus
chthonoplastes PCC 7420]
Length = 223
Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 21/228 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +Q++ V L+AV+K V + IR A G F E+++QEA
Sbjct: 4 SITERIAQIRQQL----------PPDVRLIAVTKRVSVEAIREAYQAGVRDFGESQVQEA 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L+ D+ IG LQSNK + ++ F I + K A L+ + +
Sbjct: 54 AAKQDELQDLPDITWHLIGHLQSNKAKKALTQFQWIHSCDSLKLAQRLNQLACELAVSPQ 113
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
+ +QV + K G + + + Q L ++GLM IPP + + F
Sbjct: 114 ICLQVKIMPDPHKYGWTIPELLEALPELDQCKALQIQGLMTIPPLGLSRQETLGVFERTR 173
Query: 179 EIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A E ++ +LSMGM+ D+ LAI +GAT VR+G IFGER
Sbjct: 174 DLANEIGQQNWSNLRMHQLSMGMSEDYALAIQAGATMVRLGRIIFGER 221
>gi|329296971|ref|ZP_08254307.1| alanine racemase domain-containing protein [Plautia stali symbiont]
Length = 235
Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats.
Identities = 74/227 (32%), Positives = 107/227 (47%), Gaps = 8/227 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + LQ +++I +A R + ++L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 SIEHNLQQVRERIAAAAARCGRAPEEITLLAVSKTKPASAIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L D+Q FIG LQSNK + F TV R + A L+ + L
Sbjct: 63 VEKVAELAAHPDLQWHFIGPLQSNKSRLVAENFAWCHTVDRLRIAQRLNDQRPAALPPLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V IQVN E KSGIM +L + GLM IP + + ++A
Sbjct: 123 VLIQVNISDEHSKSGIMLEAVAGLAQQIAALPRLRLRGLMAIPAPEQDYARQLAVCQQMA 182
Query: 182 --------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LS+GM+ D + AIA+G+T VRIG +FG R
Sbjct: 183 SAFRALQQDYPDVDTLSLGMSDDMDAAIAAGSTMVRIGITVFGARDY 229
>gi|317503300|ref|ZP_07961351.1| proline synthetase associated protein [Prevotella salivae DSM
15606]
gi|315665579|gb|EFV05195.1| proline synthetase associated protein [Prevotella salivae DSM
15606]
Length = 224
Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats.
Identities = 63/231 (27%), Positives = 97/231 (41%), Gaps = 26/231 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L V LVA+SK + I A + GQ F E+ QE
Sbjct: 4 DVAKNLHEVI----------GNLPKGVELVAISKYHPCEYIEAAYAEGQRRFGESHEQEL 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+K L K D+Q FIG LQ+NKV I +IE V K ++ + K R +
Sbjct: 54 KQKVEQLPK--DIQWHFIGHLQTNKVKYIAPYISMIEAVDSLKLLKEINKQAAKHDRVIK 111
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNPK---PHFYL 176
V ++++ E K G+ + + R+ + + GLM + N K F
Sbjct: 112 VLLELHIAEEETKYGLTIEDCRALLEEGTWRELEHVKICGLMMMASNTDNQKQIAAEFDT 171
Query: 177 LSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ E K + S GM+ D+++A+ G+T VR+G+ IFG R
Sbjct: 172 AKQFFDEIKNQYFSKEKDFKECSWGMSHDYKIAVEHGSTMVRVGTTIFGPR 222
>gi|91786307|ref|YP_547259.1| hypothetical protein Bpro_0397 [Polaromonas sp. JS666]
gi|91695532|gb|ABE42361.1| Protein of unknown function UPF0001 [Polaromonas sp. JS666]
Length = 238
Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats.
Identities = 75/238 (31%), Positives = 109/238 (45%), Gaps = 20/238 (8%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + LQ+ + +I + + A R SV L+AVSK + + A+S GQ F EN +
Sbjct: 1 MTMIVRNLQLVRDRITTACVAAGRDPASVRLLAVSKTFGADAVIDAMSDGQRAFGENYVA 60
Query: 60 EAKKKWIPLRK--------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
E +K + LR ++ IG +QSNK + FD +++V R KTA LS
Sbjct: 61 EGVEKILALRAWQAAQAGAPAVLEWHCIGPVQSNKTRLVAEHFDWVQSVDRLKTAQRLSE 120
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-- 169
+ L + +QVN KSG P + Q +L + GLM IP +
Sbjct: 121 QRPPHLPPLQICLQVNVDGGANKSGAAPEEALALAQEIAQLPRLTLRGLMAIPEPAIDFV 180
Query: 170 -PKPHFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I + + LSMGMT D E AI SG+T VR+G+ IFG+R
Sbjct: 181 AACAVHARTRAIFDQINAAGVLPAPMDTLSMGMTADLEAAIHSGSTMVRVGTAIFGKR 238
>gi|23016024|ref|ZP_00055785.1| COG0325: Predicted enzyme with a TIM-barrel fold [Magnetospirillum
magnetotacticum MS-1]
Length = 190
Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats.
Identities = 96/188 (51%), Positives = 127/188 (67%), Gaps = 1/188 (0%)
Query: 32 AVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEI 90
AVSK ++ + AL+ GQ +F EN++QEAK K+ LR D++L IG LQ+NKV +
Sbjct: 2 AVSKTHSAEAVAQALAAGQRVFGENRVQEAKAKFPDLRGGYPDLELHLIGPLQTNKVRDA 61
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
++LFDVIETV R K A L+ EM + R + IQVNTG E QK+G+ P+Q V +CR
Sbjct: 62 IALFDVIETVDRPKLARALADEMERTGRRPRILIQVNTGREAQKAGVDPDQLDAMVAICR 121
Query: 151 QKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRI 210
+Y+L + GLMCIPPA +P PHF LL+++AR L +SMGM+ DFE AI GAT VR+
Sbjct: 122 NEYKLPLAGLMCIPPAEDDPAPHFRLLADMARRHGLDVISMGMSGDFETAITEGATHVRV 181
Query: 211 GSGIFGER 218
GS IFG R
Sbjct: 182 GSAIFGHR 189
>gi|282877895|ref|ZP_06286704.1| pyridoxal phosphate enzyme, YggS family [Prevotella buccalis ATCC
35310]
gi|281299896|gb|EFA92256.1| pyridoxal phosphate enzyme, YggS family [Prevotella buccalis ATCC
35310]
Length = 221
Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats.
Identities = 62/231 (26%), Positives = 108/231 (46%), Gaps = 26/231 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L ++++ D V LVA+SK + I A + GQ +F E++ QE
Sbjct: 3 DVAKNLHDVQKRL----------PDDVCLVAISKYHPKEMIASAYAAGQRVFGESREQEL 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L D++ FIG LQ+NKV I +IE+V K ++ + +R +
Sbjct: 53 AEKVEALPN--DIEWHFIGHLQTNKVKYIAPYISMIESVDSPKLLREINKHAARSNRVID 110
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPK-------- 171
V ++++ E K G ++ +DF+ R+ + + GLM + + + +
Sbjct: 111 VLLELHIAEEATKYGFTLDKCRDFLEVGEWRELSNVRICGLMMMASNVDDERQIRQEMLT 170
Query: 172 --PHFYLLSE--IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F + E A + + S GM+ D+ +A+ G+T VR+GS IFGER
Sbjct: 171 AKDFFNEVKERYFADQPSFKQRSWGMSHDYLIAVTCGSTMVRVGSAIFGER 221
>gi|119717282|ref|YP_924247.1| alanine racemase domain-containing protein [Nocardioides sp. JS614]
gi|119537943|gb|ABL82560.1| alanine racemase domain protein [Nocardioides sp. JS614]
Length = 234
Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats.
Identities = 68/224 (30%), Positives = 101/224 (45%), Gaps = 8/224 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ + +I + A R V LV V+K + +R+ G EN+ QEA+
Sbjct: 9 LAANLETVRDRIAAACADAGRDPADVRLVVVTKFFPASDVRLLAELGVTDVGENRHQEAE 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + ++ FIG LQSNK + + DV+E+V R K L ++ + V
Sbjct: 69 SKAAE-CADLGLRWHFIGGLQSNKAAAVAEYADVVESVDRLKLVGPLGRGAQRRDVPVEV 127
Query: 123 YIQVNTG--YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+QV+ +SG P Q L + GLM + P +P F L+++
Sbjct: 128 LLQVSLDPPGAEGRSGADPADLPALAGAVEQAAGLRLRGLMAVAPLGEDPAAAFARLADL 187
Query: 181 ARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
R+ T LS GM+ D E A+ GAT VRIGS + G RP
Sbjct: 188 RRDFLLERPDATWLSAGMSADLEDAVRVGATHVRIGSAVLGSRP 231
>gi|260906351|ref|ZP_05914673.1| hypothetical protein BlinB_13566 [Brevibacterium linens BL2]
Length = 263
Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats.
Identities = 74/224 (33%), Positives = 110/224 (49%), Gaps = 12/224 (5%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L ++IE++A+ R V L+ VSK V ++IR A++ G ENK+QEA +K
Sbjct: 29 NLAEVNRRIESAAVRVGRDAAEVELLPVSKTVPQERIRQAVAAGCHKLGENKVQEAFRKS 88
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ D+ IG LQSNK ++ + + R K A+ L + R L VY+Q
Sbjct: 89 GEMAD-LDIDWAVIGHLQSNKARDVAKFASEFQALDRLKVAAALDRRLQAAGRSLDVYVQ 147
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
VNT E K G+ P + F+ Q L V+GLM + + + F L +
Sbjct: 148 VNTSAEESKFGMPPEELPGFLRELPQFSALKVQGLMTLAIFSSDIARVRTCFQRLRTLRD 207
Query: 183 ECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + T LSMGM+ D+E+AI GA VR+G IFG+R
Sbjct: 208 QAQDTNPELIGRGSLSMGMSGDYEVAIEEGANCVRVGQAIFGKR 251
>gi|332300649|ref|YP_004442570.1| protein of unknown function UPF0001 [Porphyromonas asaccharolytica
DSM 20707]
gi|332177712|gb|AEE13402.1| protein of unknown function UPF0001 [Porphyromonas asaccharolytica
DSM 20707]
Length = 221
Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats.
Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 26/232 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L + +I + V LVAVSK + +R A GQ +F EN+ QE
Sbjct: 2 IAERLAEIRSQI----------PEQVQLVAVSKFHPVESVREAYEAGQRLFGENRAQELA 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + D+Q FIG+LQ NKV IV +IE+V E + + + R L +
Sbjct: 52 EKAPQLPE--DIQWHFIGTLQRNKVKYIVPYVSLIESVDSEALLQEIVKQANRFDRQLRI 109
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC----RQKYQLNVEGLMCIPPAMGN---PKPHFY 175
+Q E KSG+ + V + ++ + GLM + + + F
Sbjct: 110 LLQYKIAQEESKSGLDHTELLALVDHYLATPEWRERITICGLMGMATLTADKEQIRHEFD 169
Query: 176 LLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + E + +LSMGM+ D+ LA+ +G+T VRIG+ IFGER
Sbjct: 170 TLRALQTELRERYPEISWDELSMGMSSDWPLAVEAGSTIVRIGTAIFGERQY 221
>gi|307152198|ref|YP_003887582.1| alanine racemase domain-containing protein [Cyanothece sp. PCC
7822]
gi|306982426|gb|ADN14307.1| alanine racemase domain protein [Cyanothece sp. PCC 7822]
Length = 218
Score = 248 bits (633), Expect = 6e-64, Method: Composition-based stats.
Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ + I V L+AV+K V ++ +R A G FAEN+LQE
Sbjct: 1 MTIAQRIDQIRSFI----------PSHVRLIAVTKQVPTEAMREAYQAGIRDFAENRLQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L+ D+ FIG LQSNK +++ F+ I +V + L + S
Sbjct: 51 ALVKQEQLQDLPDLCWHFIGHLQSNKAKKVLESFEWIHSVDSLELLQRLDRLAKELSNVP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+ +QV + K G + + + QL ++GLM I P N K F
Sbjct: 111 RICLQVKVLPDPNKYGWPIPEFLQDIPQIEKCCQLKIQGLMTILPLGLNEAEIKAAFETT 170
Query: 178 SEIA------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++A + ++ +LSMGM+ D++ A+ GAT +R+G +FGER
Sbjct: 171 RKLALQVNGQSQLEIRELSMGMSDDYQWAVGEGATMIRLGRILFGER 217
>gi|317129286|ref|YP_004095568.1| alanine racemase domain protein [Bacillus cellulosilyticus DSM
2522]
gi|315474234|gb|ADU30837.1| alanine racemase domain protein [Bacillus cellulosilyticus DSM
2522]
Length = 227
Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 119/228 (52%), Gaps = 14/228 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L Q ++++ R + V+++AV+K V ++ + AL+ G EN+++E
Sbjct: 1 MSVQENLNRIHQVVKDACKKENRDYNCVNIIAVTKYVSIERAKDALASGIQHIGENRVEE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A KKW L ++ FIGSLQS KV +++ FD I ++ R A + + +
Sbjct: 61 ALKKWEVLGEKG--TWHFIGSLQSKKVKKMIHQFDYIHSLDRLSLAKEIDKRTPE-GETM 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E KSGI P +T F+ + + V GLM + P + N +P+F L
Sbjct: 118 KCFVQVNVSGEETKSGIKPEETISFIHDLSKYKAIEVVGLMTMAPIVENAEEVRPYFRQL 177
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E+ + + +LSMGM+ DF +A+ GAT +RIG+ + G+
Sbjct: 178 RELKEKIEKLKLSHAPCHELSMGMSNDFAIAVEEGATFIRIGTALVGK 225
>gi|301123513|ref|XP_002909483.1| proline synthetase co-transcribed bacterial protein [Phytophthora
infestans T30-4]
gi|262100245|gb|EEY58297.1| proline synthetase co-transcribed bacterial protein [Phytophthora
infestans T30-4]
Length = 234
Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats.
Identities = 77/233 (33%), Positives = 111/233 (47%), Gaps = 16/233 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + K+ + K +LVAVSK + ++ A Q F EN +QE
Sbjct: 1 MAVAKNLLAVRAKVAGAVAKTT-WKQQCTLVAVSKTKPLEDLQEAYEADQRHFGENYIQE 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD---VIETVSREKTASLLSLEMIK-Q 116
+K L D++ +IG +QSNK +V V+ETV K A+ L+ + +
Sbjct: 60 LTQKAPLLPA--DIKWHYIGHVQSNKAKPLVRDVPNLFVVETVDSIKIANALNKASGEFR 117
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L V +QVNT E QKSGI + + + LN+ GLM I F
Sbjct: 118 TEKLNVMVQVNTSEEEQKSGIDTDGSVELARHIVASCEHLNLTGLMTIGRYGDTTSECFD 177
Query: 176 LL----SEIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L ++A T+ LSMGM+ DFELAI+ G+T VR+GS IFG R
Sbjct: 178 RLVACRKKVAEAIGKTETELALSMGMSGDFELAISCGSTHVRVGSTIFGARNY 230
>gi|111018096|ref|YP_701068.1| hypothetical protein RHA1_ro01083 [Rhodococcus jostii RHA1]
gi|110817626|gb|ABG92910.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length = 241
Score = 247 bits (632), Expect = 7e-64, Method: Composition-based stats.
Identities = 63/231 (27%), Positives = 96/231 (41%), Gaps = 14/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + +++ + A R VSL+ V+K R+ G F E++ QEA
Sbjct: 7 IEAALGTVRARLDAACRDAGRDPADVSLLPVTKFFPESDARILYDLGCREFGESREQEAT 66
Query: 63 KKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL------SLEM 113
K R + V+ IG LQ NK + I +V E+ L +LE
Sbjct: 67 AKIAEFRTVVTDSSVRWHMIGHLQRNKAKAVAHWAYAIHSVDSERLVGALGRAATTALEA 126
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH 173
++ L V +QV+ + Q+ G + + L GLM +PP +P
Sbjct: 127 GERPEPLRVLLQVSLDGDPQRGGAAIADLERLAAQVQSSPGLEYRGLMAVPPIDADPDAA 186
Query: 174 FYLLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L +I T LS GMT D E A+ G+T VR+G+ + G RP
Sbjct: 187 FEELQKIHARLRRDHPDATDLSAGMTNDLEHAVRHGSTCVRVGTALLGSRP 237
>gi|295112147|emb|CBL28897.1| pyridoxal phosphate enzyme, YggS family [Synergistetes bacterium
SGP1]
Length = 231
Score = 247 bits (632), Expect = 8e-64, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 106/230 (46%), Gaps = 10/230 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L ++++ +A LA R V LV V+K ++++ S ENK+QE
Sbjct: 1 MGLKEHAAAIRERVARTAALAGRKPSDVLLVGVTKTRSVQEMQEVASL-VDAIGENKVQE 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+ K R IG LQ+NK V LFD ++++ A L + SR L
Sbjct: 60 AQVKREAWGDHPTPPWRLIGHLQNNKARRAVELFDAVDSLDSIPLAERLDRIAGELSRRL 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V I+VNT E K+G+ P + L +EGLM I P + + F L
Sbjct: 120 SVLIEVNTAKEASKTGMAPEAFPALLDRVLTLPNLKLEGLMTIGPLTDDEVRVRQAFAEL 179
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A + + L LSMGM+ DFE I G+T VRIG+ +FG R +
Sbjct: 180 RGMAEDARGRCGLPLPVLSMGMSGDFEWGILEGSTMVRIGTALFGPREYK 229
>gi|251778603|ref|ZP_04821523.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|243082918|gb|EES48808.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 224
Score = 247 bits (632), Expect = 8e-64, Method: Composition-based stats.
Identities = 75/232 (32%), Positives = 108/232 (46%), Gaps = 22/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ K +I +V L+AVSK + ++ A G F ENK+QE
Sbjct: 1 MGIKENIEKLKLEI----------PKNVELLAVSKTKPIEDLKQAYEAGIRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L K D++ IG+LQ+NKV +V +I ++S K + + K +
Sbjct: 51 LVSKEEVLPK--DIRWHLIGNLQTNKVKYLVDKVYLIHSLSSIKLLNEIERVFEKNNTVA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG--NPKPHFYLLS 178
V IQ+N G E KSGI+ + + + +G+M I P N + +F
Sbjct: 109 NVLIQINIGREESKSGILKEGLQGLIEAIETCNYVLAKGIMVIIPKGDEKNNRKYFKETK 168
Query: 179 EIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
EI + K+ LSMGMT DF AI G+T VRIG GIFGER T
Sbjct: 169 EIFDYLKVRKYKNIKMEVLSMGMTHDFNEAIEEGSTLVRIGQGIFGERNYST 220
>gi|300121038|emb|CBK21420.2| unnamed protein product [Blastocystis hominis]
Length = 618
Score = 247 bits (632), Expect = 8e-64, Method: Composition-based stats.
Identities = 66/240 (27%), Positives = 110/240 (45%), Gaps = 34/240 (14%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L ++ Q+ +A +VAVSK ++ I+ G F EN +QE
Sbjct: 383 ALAKRVAEVSQQFNKTA---------PRIVAVSKKKPAEAIQELYDYGHRDFGENYVQEL 433
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEM--IKQ 116
K L K D++ IG LQS K +++ + VIE+V K A L+ ++
Sbjct: 434 LDKAEALPK--DIRWHLIGHLQSGKCNQLIRKIPNLWVIESVDSIKLAEKLNSACLLAER 491
Query: 117 SRFLPVYIQVNTGYEIQ----------KSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPP 165
+ L V+++V+T E KSG +P + +L++ GLM +
Sbjct: 492 ADPLNVFVEVHTSGEETCALFVCLTSRKSGCLPEECLPLAEFILSNCPKLHLMGLMTVGK 551
Query: 166 AMGNPKPHFYLLSEIAR-------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P+P+F L+ + E +LSMGM+ D+E A+ G+T++R+G+ IFG R
Sbjct: 552 LDAPPEPYFEQLNNLRADLLKKHPELGSLELSMGMSGDWETAVKMGSTNIRVGTTIFGAR 611
>gi|311068059|ref|YP_003972982.1| hypothetical protein BATR1942_05485 [Bacillus atrophaeus 1942]
gi|310868576|gb|ADP32051.1| hypothetical protein BATR1942_05485 [Bacillus atrophaeus 1942]
Length = 230
Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats.
Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 16/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L+ ++I + + R D V+++AV+K V +++ + A+ G EN+ E
Sbjct: 1 MRVIDNLRHINERINEACNRSGRCSDEVTIIAVTKYVSAERAQEAVDAGISSLGENRDAE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K ++ D FIGSLQS KV +V+ I ++ R A+ + +
Sbjct: 61 LLRKQDIVKGNPD--WHFIGSLQSRKVKAVVNNVSHIHSLDRLSLANEIEKRATG---PV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
++QVNT E K G+ + V + V+GLM + P + + F L
Sbjct: 116 RCFVQVNTSLEPSKHGMKQEEVIPLVQELAGFEHIIVDGLMTMAPLTEDTEKIRSCFRAL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
E+ + + T+LSMGM+ DFE+AI GAT +RIGS + G
Sbjct: 176 RELRDQVQKLKQPNAPCTELSMGMSNDFEIAIEEGATYIRIGSSLVG 222
>gi|66524764|ref|XP_623518.1| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like [Apis mellifera]
Length = 248
Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats.
Identities = 79/246 (32%), Positives = 113/246 (45%), Gaps = 28/246 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
L L++ K KI + A+R + LVAVSK+ + I A GQ F EN +
Sbjct: 4 LIANLKLVKNKITIA--SARRSPEYKYFEPRLVAVSKLKPVELIVDAYKAGQRHFGENYV 61
Query: 59 QEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLS--- 110
E +K L ++ FIG LQ NKV+++ V VIE++ EK AS ++
Sbjct: 62 NELLEKGNDPIILETCTNIHWHFIGHLQRNKVNKLLSVPNLYVIESIDNEKLASAVNTSW 121
Query: 111 -LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMG 168
++ L V +QVNT E +K+G V L GLM I
Sbjct: 122 INYRKDENLKLKVMVQVNTSKEQEKNGCEITNVCPLVQHIIANCKNLEFIGLMTIGMFGY 181
Query: 169 N----PKPHFYLLSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ P P F L E + K +LSMGM+ D+E A+ G+T+VR+G+ IFG
Sbjct: 182 DYSKEPNPDFLCLKECRENVSKQLDIDLKQIELSMGMSNDYEHAVELGSTNVRVGTAIFG 241
Query: 217 ERPCQT 222
ERP +
Sbjct: 242 ERPKKN 247
>gi|154497036|ref|ZP_02035732.1| hypothetical protein BACCAP_01329 [Bacteroides capillosus ATCC
29799]
gi|150273435|gb|EDN00563.1| hypothetical protein BACCAP_01329 [Bacteroides capillosus ATCC
29799]
Length = 238
Score = 247 bits (631), Expect = 9e-64, Method: Composition-based stats.
Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 13/231 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L +++ K++I +A+ R V+LVA +K+ S IR A++ G + EN++QE
Sbjct: 1 MTLPERVEAVKREIAAAALEVGREAAEVTLVAATKVQTSDTIRQAIAAGITVCGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ L FIG LQ+NKV +V D+IE++ + + + K
Sbjct: 61 MTA-HLDDDAYAGAALHFIGHLQTNKVKYVVGRVDMIESIDSRRLLEAVEAQAAKLDLVQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+ +++N G E KSG P + + L + + + GLM IPP P + F +
Sbjct: 120 DILLEINVGGEESKSGAEPEEALELARLAAELPHIRLRGLMAIPPVATVPGGNRHFFAEM 179
Query: 178 SEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + + + LSMGM+ D+E A+ GAT VR+G+ +FG RP
Sbjct: 180 YHLYVDIRTALDHNGTDMDCLSMGMSGDYEDAVREGATHVRVGTALFGPRP 230
>gi|28198973|ref|NP_779287.1| hypothetical protein PD1080 [Xylella fastidiosa Temecula1]
gi|28057071|gb|AAO28936.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
Length = 241
Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats.
Identities = 70/228 (30%), Positives = 101/228 (44%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L +I + R SV+L+ VSK D IR++ G ENK Q+A
Sbjct: 3 DIRSNLTKVYSRIVAACQSVDRDPSSVTLLPVSKTADEVHIRLSYEAGCRKLGENKAQDA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW + D+ IG LQ+NK + + + + A L + + R L
Sbjct: 63 YHKWEAMSDLTDLYWSVIGHLQTNKAKLVARFASEFQALDSFRVAEALERRLQIEGRSLD 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V IQVNT E K G+ P + FV L V GLM + G+ + F L
Sbjct: 123 VLIQVNTSGETNKYGLPPEEVVRFVQALSAYPALRVRGLMTLAMLSGDTSRVRQCFTQLR 182
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +T+LSMGM+ D E+AI GAT VR+G I+G R
Sbjct: 183 ILRDRIQQASPQGHHITELSMGMSGDLEIAIEEGATVVRVGQAIYGAR 230
>gi|117928222|ref|YP_872773.1| hypothetical protein Acel_1014 [Acidothermus cellulolyticus 11B]
gi|117648685|gb|ABK52787.1| Protein of unknown function UPF0001 [Acidothermus cellulolyticus
11B]
Length = 244
Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats.
Identities = 67/227 (29%), Positives = 108/227 (47%), Gaps = 11/227 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L ++++ + A R + ++++AV+K + IR+ G EN+ QEA+
Sbjct: 14 LAANLAALRRRVIAACRNAGRDPEEITVIAVTKTFPAADIRLLHELGVHDVGENRDQEAR 73
Query: 63 KKWIPLR----KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K L ++ FIG+LQ NK + ++ +V R + L+ ++ R
Sbjct: 74 AKRAELAAGGFDPDLLRWHFIGALQVNKCRSVARYAAMVHSVDRAEQLPRLAAGARERGR 133
Query: 119 FLPVYIQVNTGYEIQ--KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
LP +QVN E+ + G+ P L L + G+M I P G P F
Sbjct: 134 VLPCLVQVNLDPEVSPGRRGVPPADALTLADLLADTPGLELRGVMGIAPLDGEPAAAFAT 193
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+++AR+ + T LS GM+ D E AIA+GAT VRIG+ + G R
Sbjct: 194 LAQVARKLQARYPAATVLSAGMSGDLEAAIAAGATHVRIGAALLGTR 240
>gi|182681687|ref|YP_001829847.1| alanine racemase domain-containing protein [Xylella fastidiosa M23]
gi|182631797|gb|ACB92573.1| alanine racemase domain protein [Xylella fastidiosa M23]
gi|307580125|gb|ADN64094.1| alanine racemase domain-containing protein [Xylella fastidiosa
subsp. fastidiosa GB514]
Length = 261
Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats.
Identities = 70/228 (30%), Positives = 101/228 (44%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L +I + R SV+L+ VSK D IR++ G ENK Q+A
Sbjct: 23 DIRSNLTKVYSRIVAACQSVDRDPSSVTLLPVSKTADEVHIRLSYEAGCRKLGENKAQDA 82
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KW + D+ IG LQ+NK + + + + A L + + R L
Sbjct: 83 YHKWEAMSDLTDLYWSVIGHLQTNKAKLVARFASEFQALDSFRVAEALERRLQIEGRSLD 142
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V IQVNT E K G+ P + FV L V GLM + G+ + F L
Sbjct: 143 VLIQVNTSGETNKYGLPPEEVVRFVQALSAYPALRVRGLMTLAMLSGDTSRVRQCFTQLR 202
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +T+LSMGM+ D E+AI GAT VR+G I+G R
Sbjct: 203 ILRDRIQQASPQGHHITELSMGMSGDLEIAIEEGATVVRVGQAIYGAR 250
>gi|158255706|dbj|BAF83824.1| unnamed protein product [Homo sapiens]
Length = 275
Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats.
Identities = 77/245 (31%), Positives = 118/245 (48%), Gaps = 26/245 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 11 LGVGCALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 68
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSL 111
+Q +K L +++ FIG LQ V+++ V ++ETV K A ++
Sbjct: 69 YVQALLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKLADKVNS 128
Query: 112 EMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMG 168
++ L V +Q+NT E K G+ P++T V + L GLM I
Sbjct: 129 SWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGH 188
Query: 169 N----PKPHFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ P P F LL + E KL +LSMGM+ DF+ A+ G+T+VRIGS IFG
Sbjct: 189 DLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFG 248
Query: 217 ERPCQ 221
ER
Sbjct: 249 ERDYS 253
>gi|94265278|ref|ZP_01289036.1| Protein of unknown function UPF0001 [delta proteobacterium MLMS-1]
gi|93454212|gb|EAT04530.1| Protein of unknown function UPF0001 [delta proteobacterium MLMS-1]
Length = 232
Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats.
Identities = 83/229 (36%), Positives = 119/229 (51%), Gaps = 12/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L K +I +A A R +V LVAVSK V ++I A++ GQ +F E+ LQEA+
Sbjct: 4 IAQNLAAIKARIAAAARRAGRDPQTVRLVAVSKKVAPERIARAVAGGQRLFGESYLQEAE 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + E + FIG LQSNK + F ++E+V R K A L+ R LPV
Sbjct: 64 AKMARVDPEGRLHWHFIGHLQSNKAKAAATRFAMVESVDRLKLADRLAHHAAAAGRLLPV 123
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
+QVN E +K+G+ P +T+ + + L V GLM +PP + HF L +
Sbjct: 124 LVQVNIAGEARKAGVAPAETRALLQELDKLPALRVMGLMTMPPWASTAEASRGHFRQLRQ 183
Query: 180 IAR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+A +LSMGM+ DFE+A+ GAT VR+G+ IFG R
Sbjct: 184 LADAMAEAGLLGRHGPVELSMGMSGDFEVAVEEGATLVRVGTAIFGARD 232
>gi|256425067|ref|YP_003125720.1| alanine racemase [Chitinophaga pinensis DSM 2588]
gi|256039975|gb|ACU63519.1| alanine racemase domain protein [Chitinophaga pinensis DSM 2588]
Length = 244
Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 12/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N L +I ++ + R V L+ +K V + IR+A+ G+ + ENK+QE
Sbjct: 4 TIINNLHTVHNRIAHACEKSGRNPADVRLLLATKTVFPEYIRIAIEAGERLIGENKVQEF 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L V+ FIG LQ NKV +++ ++++ R A L + ++ R L
Sbjct: 64 RDKHEALSD-LSVERHFIGHLQHNKVKDVLKYVSCVQSLDRLSIAQELDKRLQQEGRNLD 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V+IQVNT YE K G+ P F+ + L V+GLM I + +P LL
Sbjct: 123 VFIQVNTSYEESKFGLQPADVAGFIRELKSLDTLQVKGLMTIGLLDVDREKMRPSLTLLR 182
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + KLSMGM++D ++AIA GA VR+G+ IFG R
Sbjct: 183 QTREQLIAAGIENSDQFKLSMGMSQDLDMAIAEGADIVRVGTAIFGNR 230
>gi|88705480|ref|ZP_01103191.1| conserved hypothetical protein [Congregibacter litoralis KT71]
gi|88700570|gb|EAQ97678.1| conserved hypothetical protein [Congregibacter litoralis KT71]
Length = 229
Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats.
Identities = 77/224 (34%), Positives = 112/224 (50%), Gaps = 9/224 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + Q++ ++ +RP DSV ++AVSK ++ +R A + G F EN LQEA
Sbjct: 6 IAANIAKVLQQVSSAQEKYQRPPDSVRVMAVSKTQSAEAVRDAAAAGLTDFGENYLQEAL 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + + FIG +QSNK I FD + +V REK LS + L +
Sbjct: 66 EKIKS-CADLALTWHFIGPIQSNKTRAIAEHFDWVHSVDREKILRRLSEQRDPSMAPLNL 124
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSE 179
IQVN E KSGI P Q + L Q + + GLM IP + K L+
Sbjct: 125 CIQVNVSGEDSKSGITPRQLAPILALATQLPNIRLRGLMAIPAPAEDFGAQKAACDSLAS 184
Query: 180 IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + L LS+GM+ D E A+A+G+T VRIG+ IFG R
Sbjct: 185 LFEDARKEHPTLDTLSIGMSADLEAAVAAGSTMVRIGTAIFGAR 228
>gi|297621435|ref|YP_003709572.1| hypothetical protein wcw_1209 [Waddlia chondrophila WSU 86-1044]
gi|297376736|gb|ADI38566.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
Length = 225
Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats.
Identities = 69/226 (30%), Positives = 107/226 (47%), Gaps = 13/226 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + I N+ A R VSL+AV+K + + A G F EN++QE
Sbjct: 1 MSVIDNYHALISDIGNTVRKAGRDPSEVSLIAVTKGFSLEHVLPAYKAGARGFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K K D++ IG+LQ NKV +++ F +I +V + A +S + +
Sbjct: 61 ALPKIEKAPK--DIEWHLIGTLQKNKVRKVIGKFSLIHSVDSLELAQKISETSLVCNTVT 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
PV +Q NT E K G+ + + ++++GLM I P + + + F L
Sbjct: 119 PVLLQANTSGEQSKHGLQSEEWIANWDSLLELEGIDLQGLMTIAPFVDDEKVIRRCFRAL 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + L LSMGM+ D+ LAI GAT +RIGS IF
Sbjct: 179 RQLRDRLQAMAGNKCTLKHLSMGMSHDYRLAINEGATQLRIGSAIF 224
>gi|197101691|ref|NP_001126869.1| proline synthase co-transcribed bacterial homolog protein [Pongo
abelii]
gi|75041031|sp|Q5R4Z1|PROSC_PONAB RecName: Full=Proline synthase co-transcribed bacterial homolog
protein
gi|55732977|emb|CAH93175.1| hypothetical protein [Pongo abelii]
Length = 275
Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats.
Identities = 79/243 (32%), Positives = 116/243 (47%), Gaps = 22/243 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+ +G L+ ++++ + L R ++ LVAVSK + + A GQ F EN +
Sbjct: 11 LGVGCALRAVNERVQQAVALRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYV 70
Query: 59 QEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEM 113
QE +K L +++ FIG LQ V+++ V V+ETV K A ++
Sbjct: 71 QELLEKASNPKILSLGPEIKWHFIGHLQKQNVNKLMAVPNLFVLETVDSVKLAGKVNSSW 130
Query: 114 IKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN- 169
K+ L V +Q+NT E K G+ P++T V + L GLM I +
Sbjct: 131 QKKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDL 190
Query: 170 ---PKPHFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P P F LL + E KL +LSMGM+ DF+ AI G+T+VRIGS IFGER
Sbjct: 191 SQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSVDFQHAIEVGSTNVRIGSMIFGER 250
Query: 219 PCQ 221
Sbjct: 251 DYS 253
>gi|168704574|ref|ZP_02736851.1| hypothetical protein GobsU_33869 [Gemmata obscuriglobus UQM 2246]
Length = 235
Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats.
Identities = 61/222 (27%), Positives = 97/222 (43%), Gaps = 12/222 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + K +I + A R D V+LVAV+K V + G E++ QE
Sbjct: 10 LSERFAAVKGRIAEACRRAGRTPDGVTLVAVTKTVSPAVAALVPPLGVRALGESRPQELW 69
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + IG LQ NK+ V L ++ +V + L+ K+ + V
Sbjct: 70 RKAEAVA---GADWHLIGHLQRNKIDRTVPLVSLVHSVDSARVLDALNAFGQKRGAPVAV 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
++VN E K G P + ++V GLM + +P +P F L E
Sbjct: 127 LLEVNCSGEESKGGFSPAEVPALGDTLAGLGGVDVRGLMTMAAYSDDPASARPTFARLRE 186
Query: 180 IARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + L +LSMGM+ DFE+ + GAT VR+G+ +F
Sbjct: 187 LRDQLRARTGLALNELSMGMSNDFEIGVEEGATLVRVGTTLF 228
>gi|254518699|ref|ZP_05130755.1| alanine racemase domain-containing protein [Clostridium sp.
7_2_43FAA]
gi|226912448|gb|EEH97649.1| alanine racemase domain-containing protein [Clostridium sp.
7_2_43FAA]
Length = 225
Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats.
Identities = 73/230 (31%), Positives = 109/230 (47%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + ++ + V+LVAVSK + I +A GQ F ENK+QE
Sbjct: 1 MDIEENIIKLRRSL----------PKDVTLVAVSKTKPIEDIEIAYKTGQRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L K D++ FIGSLQ+NKV +V +I ++S K + + E K++
Sbjct: 51 LIDKEKSLEK--DIRWHFIGSLQTNKVKYLVGKVHLIHSLSSIKLLNKIESEFSKKNCTA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN--PKPHFYLLS 178
+ IQ+N G E KSGI + D + V+GLM I P + +F +
Sbjct: 109 NLLIQINIGKEESKSGIFEEELNDLINEIEICNNCKVKGLMAIIPKGNENTNRYYFKKMK 168
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
I + + LSMGMT D+E+AI G+ +R+G GIFG+R
Sbjct: 169 NIYDDLSKKSYKNISMEILSMGMTNDYEIAIEEGSNLIRVGEGIFGKRNV 218
>gi|189220120|ref|YP_001940760.1| enzyme with a TIM-barrel fold [Methylacidiphilum infernorum V4]
gi|189186978|gb|ACD84163.1| Predicted enzyme with a TIM-barrel fold [Methylacidiphilum
infernorum V4]
Length = 246
Score = 246 bits (630), Expect = 1e-63, Method: Composition-based stats.
Identities = 74/226 (32%), Positives = 114/226 (50%), Gaps = 11/226 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ +L+ + KIE ++ + R ++LVAV+K + + L G V EN++QEA
Sbjct: 9 SIQERLEKLQYKIETASRKSGRNPKDITLVAVTKGFGPEVVETLLRMGIVHIGENRVQEA 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K + ++ FIG LQ NK+ LFD I++V + A+LLS + L
Sbjct: 69 RLKKEQIGEKG--IWHFIGHLQKNKIKLTSHLFDWIDSVDDLEDATLLSHFAQNMGKTLK 126
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+ +QVN E K G P + + +L + GLM I PA +P +P F L
Sbjct: 127 ILVQVNVSGESTKFGTTPELAQSLCLAINALPRLEILGLMTIAPASPDPEKVRPVFSRLR 186
Query: 179 EIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + L LSMGM++DFE+AI GAT +RIG + G R
Sbjct: 187 MLRDKIESQSGIPLPVLSMGMSQDFEVAIEEGATMIRIGHFLLGPR 232
>gi|326773558|ref|ZP_08232841.1| pyridoxal phosphate enzyme, YggS family [Actinomyces viscosus C505]
gi|326636788|gb|EGE37691.1| pyridoxal phosphate enzyme, YggS family [Actinomyces viscosus C505]
Length = 266
Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats.
Identities = 67/224 (29%), Positives = 102/224 (45%), Gaps = 10/224 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L + +I+ +A A R + L+ VSK V +++R A + G ENK+QEA++K
Sbjct: 31 NLDAVRARIDAAAKRAGRDTAEIRLLPVSKTVPEERLRTAFAAGITQMGENKVQEAQRKS 90
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L + IG LQ+NK + + D + + + A L + R L VY+Q
Sbjct: 91 ENLAD-LGISWSVIGHLQTNKAKNVAAFADEFQALDSLRLAGALDRRLQAAGRGLDVYVQ 149
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
VN+ E K G+ P+ F+ L V GLM + + + F ++ +
Sbjct: 150 VNSSGEPSKFGLEPDDVAGFLAALPVYSSLRVRGLMTLAANTSDEARVRECFNVMRRLRD 209
Query: 183 E------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LSMGM+ DFE AI G+T VR+G IFG R
Sbjct: 210 AALEAGTVGDGLLSMGMSGDFEAAIEGGSTCVRVGQAIFGARAT 253
>gi|225012866|ref|ZP_03703299.1| alanine racemase domain protein [Flavobacteria bacterium MS024-2A]
gi|225002988|gb|EEG40965.1| alanine racemase domain protein [Flavobacteria bacterium MS024-2A]
Length = 216
Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats.
Identities = 72/228 (31%), Positives = 107/228 (46%), Gaps = 20/228 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + FK + +SVSL+AVSK + A GQ F ENK+QE
Sbjct: 1 MSISENIIEFKSTL----------SESVSLIAVSKTKPQSDLLEAYQAGQRAFGENKIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+KW L K D+ IG +Q+NKV + +I V K + + +K +R +
Sbjct: 51 MAEKWEKLPK--DIDWHMIGHVQTNKVKYMAPFVHLIHAVDSLKLLKEIQKQALKNNRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
IQ+ E K G+ P + ++ + + GLM + N + F L
Sbjct: 109 GCLIQIRIAEEETKFGLPPEELPLLLLAAEDLPNVTIRGLMGMASFTANLNQVRKEFKHL 168
Query: 178 SEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + +E K T LSMGM+ D+E+AI GAT +R+GS IFGER
Sbjct: 169 ASLYKETIKVYPKNTILSMGMSGDYEIAIEEGATMIRVGSKIFGERNY 216
>gi|71652235|ref|XP_814779.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70879780|gb|EAN92928.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 252
Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats.
Identities = 82/233 (35%), Positives = 116/233 (49%), Gaps = 23/233 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + +++ + RP V+LVAVSK ++ CG F EN +QE
Sbjct: 14 EIAENYKNVLGRMDAA--SGGRP---VTLVAVSKTKSPACVQALYDCGHRCFGENYVQEL 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD---VIETVSREKTASLLSLEMI--KQ 116
+K L K D+Q FIG LQSNKV E++ D +++TV EK A+ L+ + +
Sbjct: 69 VEKAGVLPK--DIQWHFIGHLQSNKVKELLEGVDGLYLVQTVDSEKLATKLNNGCVTYRG 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNPKPH- 173
R L VYIQVNT E KSG P NQT + ++ LNV G+M I +P
Sbjct: 127 GRSLNVYIQVNTSGEESKSGTEPGNQTVELAQYIQEHCKHLNVAGVMTIGMPDYTSRPEN 186
Query: 174 FYLLSEIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L ++ LSMGMT DFE A+ G+T VR+G+ +FG+R
Sbjct: 187 FECLLQVREAVARALSVPADSLALSMGMTGDFENAVKMGSTIVRVGTALFGKR 239
>gi|300727951|ref|ZP_07061329.1| pyridoxal phosphate enzyme, YggS family [Prevotella bryantii B14]
gi|299774793|gb|EFI71407.1| pyridoxal phosphate enzyme, YggS family [Prevotella bryantii B14]
Length = 224
Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats.
Identities = 61/231 (26%), Positives = 101/231 (43%), Gaps = 26/231 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + V LVA+SK ++ I A GQ IF E+ QE
Sbjct: 4 DVAKNLHEVLDNL----------PQDVRLVAISKYHPNEYIEAAYQEGQRIFGESHEQEL 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KK L K D++ FIG LQ+NKV I +IE V K ++ + K R +
Sbjct: 54 AKKVESLPK--DIEWHFIGHLQTNKVKYIAPYISMIEAVDSFKLLKEINKQAAKHDRIIN 111
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
V ++++ E K G+ + ++ + ++ + + GLM + + + F +
Sbjct: 112 VLLELHIAEEETKYGLTLDDCRNLLAEGTWKELEHVQICGLMMMASNTDDTQLIEKEFDI 171
Query: 177 LSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ E K + S GM+ D++LAI +T VR+G+ IFG R
Sbjct: 172 AAKFFDEIKQKYFTNDNHFCERSWGMSNDYQLAIKHQSTMVRVGTFIFGPR 222
>gi|19114789|ref|NP_593877.1| alanine racemase (predicted) [Schizosaccharomyces pombe 972h-]
gi|74625289|sp|Q9P6Q1|YKC9_SCHPO RecName: Full=UPF0001 protein C644.09
gi|7708588|emb|CAB90136.1| alanine racemase (predicted) [Schizosaccharomyces pombe]
Length = 237
Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats.
Identities = 83/231 (35%), Positives = 121/231 (52%), Gaps = 18/231 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L + + +I+ SA R V LVAVSK + + A + GQ F EN +QE
Sbjct: 3 TIHSCLDLIRSQIQQSAN--GRN---VLLVAVSKFHPVETLMEAYNAGQRHFGENYMQEF 57
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRF 119
KK + DVQ FIGSLQS+K +I S+ ++ IET+ EK A L++
Sbjct: 58 LKKVELMPD--DVQWHFIGSLQSSKCKKIASVKNLYSIETIDTEKKARLVNSAREALQLP 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG----NPKPHFY 175
L VYIQVNT E K G+ P++ + + L ++GLM I + P F
Sbjct: 116 LNVYIQVNTSGEENKGGVTPSKVLELCKQVQDMKYLRLKGLMTIGSISNSQLSDHNPDFQ 175
Query: 176 LLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+LS++ + +LSMGM+ D+ LAI G+ SVR+GS IFG RP +
Sbjct: 176 VLSDLRESLQNELGIPLQLSMGMSSDYLLAIKYGSDSVRVGSSIFGSRPTE 226
>gi|110639046|ref|YP_679255.1| hypothetical protein CHU_2661 [Cytophaga hutchinsonii ATCC 33406]
gi|110281727|gb|ABG59913.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406]
Length = 220
Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats.
Identities = 64/204 (31%), Positives = 95/204 (46%), Gaps = 16/204 (7%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
+L+AV+K + ++ A S G IF ENK+QE K L K D+Q IG LQSNKV
Sbjct: 19 TLIAVTKTHPVEVLQQAYSSGLRIFGENKVQELISKAEVLPK--DIQWHLIGHLQSNKVK 76
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV-- 146
I +I +V K ++ E K R + +QV E K G+ + + +
Sbjct: 77 YIAPFIYMIHSVDSFKLLQEINKEAKKNKRVIACLLQVYIANEDTKFGLDTQELTNLLLH 136
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA---------RECKLTKLSMGMT 194
Q + ++GLM + + + F L + + ++SMGMT
Sbjct: 137 PELEQLENIQIQGLMGMATNTNDQEQVRKEFRYLKNLFKSLAETIEKKNVAWKEISMGMT 196
Query: 195 RDFELAIASGATSVRIGSGIFGER 218
D+ LA+ G+T VRIGS IFG R
Sbjct: 197 SDYRLAVEEGSTMVRIGSAIFGNR 220
>gi|300858981|ref|YP_003783964.1| hypothetical protein cpfrc_01564 [Corynebacterium
pseudotuberculosis FRC41]
gi|300686435|gb|ADK29357.1| hypothetical protein cpfrc_01564 [Corynebacterium
pseudotuberculosis FRC41]
gi|302206679|gb|ADL11021.1| Pyridoxal phosphate enzyme, YggS family [Corynebacterium
pseudotuberculosis C231]
gi|302331231|gb|ADL21425.1| Pyridoxal phosphate enzyme, YggS family [Corynebacterium
pseudotuberculosis 1002]
gi|308276921|gb|ADO26820.1| Pyridoxal phosphate enzyme, YggS family [Corynebacterium
pseudotuberculosis I19]
Length = 232
Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats.
Identities = 76/219 (34%), Positives = 108/219 (49%), Gaps = 11/219 (5%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67
+ ++I NSA A R V L+AV+K + +R A++ G + ENK QE K
Sbjct: 12 EAVLERIVNSAERAGRDAAEVRLIAVTKTHPVEVVRDAVAAGMTVLGENKPQELSSKA-- 69
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
K V IG LQ NK E+ + + + A L ++ R L V++QVN
Sbjct: 70 -SKVSGVTWCAIGRLQRNKAKEVAAWAQEFHALDSLRLADALQRKLEAADRMLEVFVQVN 128
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIAREC 184
T E+QK GI P + +F+ +L+V GLM + P + F L E+
Sbjct: 129 TSGEVQKGGIAPAEAAEFLGQLADYDRLHVRGLMTMARNSPEEAVVRSSFVQLRELRDTL 188
Query: 185 K-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ T+LSMGM+ DFE AI GATSVR+GS +FG R
Sbjct: 189 QPYFPTATELSMGMSGDFEWAIEEGATSVRVGSALFGPR 227
>gi|322827132|gb|EFZ31435.1| hypothetical protein TCSYLVIO_2251 [Trypanosoma cruzi]
Length = 252
Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats.
Identities = 83/233 (35%), Positives = 116/233 (49%), Gaps = 23/233 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + +++ + RP V+LVAVSK ++ CG F EN +QE
Sbjct: 14 EIAENYKNVLGRMDAA--SGGRP---VTLVAVSKTKSPACVQALYDCGHRCFGENYVQEL 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD---VIETVSREKTASLLSLEMI--KQ 116
+K L K D+Q FIG LQSNKV E++ D +++TV EK A+ L+ + +
Sbjct: 69 VEKAGVLPK--DIQWHFIGHLQSNKVKELLEGVDGLYLVQTVDSEKLATKLNNGCVTYRG 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNPKPH- 173
R L VYIQVNT E KSG P NQT + ++ LNV G+M I +P
Sbjct: 127 GRSLNVYIQVNTSGEESKSGTEPGNQTVELAQYIQEHCKHLNVAGVMTIGMPDYTSRPEN 186
Query: 174 FYLLSEIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L ++ LSMGMT DFE AI G+T VR+G+ +FG+R
Sbjct: 187 FECLLQVREAVARALSVPADSLALSMGMTGDFENAIKMGSTVVRVGTALFGKR 239
>gi|298492677|ref|YP_003722854.1| alanine racemase domain-containing protein ['Nostoc azollae' 0708]
gi|298234595|gb|ADI65731.1| alanine racemase domain protein ['Nostoc azollae' 0708]
Length = 222
Score = 246 bits (629), Expect = 2e-63, Method: Composition-based stats.
Identities = 75/221 (33%), Positives = 112/221 (50%), Gaps = 14/221 (6%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
Q+I I A SV L+AVSK V ++ +R A + G FAE+++QEA K L
Sbjct: 4 SISQRIVT--IRASL-PASVRLIAVSKQVTTELMREAYTAGIRDFAESRIQEAASKQAEL 60
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
+ D+ FIG+LQSNK + + LFD I +V + A L + V +QV
Sbjct: 61 QDLPDITWHFIGNLQSNKAKKALELFDWIHSVDSLQIAQRLDTLASQLGVTPLVCLQVKI 120
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARE-- 183
+ KSG M ++ + Q L ++GLM IPP + F ++A+E
Sbjct: 121 LPDPNKSGWMVSELLADLEALNQCKNLQIQGLMTIPPFGLDHDEISSIFNHTQKLAKEIE 180
Query: 184 ------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K+ LSMGM+ D++LA+ +GAT VR+G+ +FG R
Sbjct: 181 SQQWLHIKMLHLSMGMSGDYQLAVRAGATMVRLGTILFGNR 221
>gi|149742615|ref|XP_001492309.1| PREDICTED: similar to Proline synthetase co-transcribed bacterial
homolog protein [Equus caballus]
Length = 275
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 79/243 (32%), Positives = 122/243 (50%), Gaps = 26/243 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A S GQ F EN
Sbjct: 11 LGVGFALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQRTFGEN 68
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSL 111
+QE +K L +++ FIG LQ V+++ V ++ETV K A ++
Sbjct: 69 YVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETVDSVKLADKVNS 128
Query: 112 EMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMG 168
K+ L + +Q+NT E K G++P++T V + L GLM I
Sbjct: 129 SWQKKGSPERLKIMVQINTSGEESKHGLLPSETVATVEHIKAKCPSLEFVGLMTIGSFGH 188
Query: 169 N----PKPHFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ P P F +L + E KL+ +LSMGM+ DF+ AI G+T+VRIGS IFG
Sbjct: 189 DLSQGPNPDFQVLLSLREELCKKLSIPTEQVELSMGMSLDFQHAIEVGSTNVRIGSTIFG 248
Query: 217 ERP 219
ER
Sbjct: 249 ERD 251
>gi|254253188|ref|ZP_04946506.1| hypothetical protein BDAG_02441 [Burkholderia dolosa AUO158]
gi|124895797|gb|EAY69677.1| hypothetical protein BDAG_02441 [Burkholderia dolosa AUO158]
Length = 262
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 81/231 (35%), Positives = 109/231 (47%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I ++A A R SVSL+AVSK + +R A + GQ F EN +Q
Sbjct: 31 MSDLAARLASVHRRIADAARAAGRDPSSVSLLAVSKTFPAADVRAAHAAGQRAFGENYVQ 90
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L D++ FIG LQSNK + FD + +V R K A L+ +
Sbjct: 91 ESIDKIDALADLRADLEWHFIGPLQSNKTRAVAERFDWVHSVDRLKIAQRLADQRPAHLP 150
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V +QVN E KSG+ P D L + GLM IP +P
Sbjct: 151 PLNVCVQVNISGEASKSGVAPADVADVAHAVAALPSLRLRGLMAIPEPAADPDAQRAPHR 210
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 211 ALRALFDTLRADGLPLDTLSMGMSADLEAAVLEGATIVRVGTAIFGARDYS 261
>gi|242010392|ref|XP_002425952.1| predicted protein [Pediculus humanus corporis]
gi|212509935|gb|EEB13214.1| predicted protein [Pediculus humanus corporis]
Length = 228
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 78/239 (32%), Positives = 114/239 (47%), Gaps = 36/239 (15%)
Query: 2 SLGNKLQVFKQKIENSA--ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
++ L+ +++I N+ LVAVSK + I A +CGQ F EN +Q
Sbjct: 3 TIQKNLKTVQERIRNACLKRAVNLSNIEPRLVAVSKTKPIESIIEAYNCGQRHFGENYVQ 62
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSL---EMI 114
E FIG LQ NKV+++ + +ETV EK A L+ +
Sbjct: 63 EI--------------WHFIGHLQRNKVNKLLSIPNLFAVETVDSEKLADALNNYFSKTE 108
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCIP------PAM 167
+++ + ++IQVNT E KSG PN+T + V LNV GLM I +
Sbjct: 109 DENKKINIFIQVNTSGEESKSGCKPNETCNLVKHIIDNCKHLNVMGLMTIGKYDNYLTSQ 168
Query: 168 GNPKPHFYLLSE----IARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P F L + I + +T +LSMGM+ DFE AI +G+++VR+GS IFG R
Sbjct: 169 DKIDPDFQCLIDCKDNICKNLNVTFDQFELSMGMSADFERAILAGSSNVRVGSLIFGGR 227
>gi|257455743|ref|ZP_05620971.1| pyridoxal phosphate enzyme, YggS family [Enhydrobacter aerosaccus
SK60]
gi|257446871|gb|EEV21886.1| pyridoxal phosphate enzyme, YggS family [Enhydrobacter aerosaccus
SK60]
Length = 241
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 78/230 (33%), Positives = 105/230 (45%), Gaps = 21/230 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + Q K + R +V L+AVSK + IR GQ F EN +QEA
Sbjct: 21 ALIARWQQVKTDVA-------RLNPTVKLLAVSKTKPNWMIRTLAQQGQQDFGENYVQEA 73
Query: 62 KKKWIPLRK----EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K L+ E + +IG +Q NK E+ + FD + V R A L+ + +
Sbjct: 74 VAKIAALKDVTANEQPLVWHYIGHIQRNKTKELAAHFDWVHGVDRLIIAQRLNEQRAEHL 133
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L + I+VN E KSG PNQ + V Q L + GLM IP N F
Sbjct: 134 APLNICIEVNIDDEASKSGCQPNQLPELVTEISQLPNLQLRGLMIIPAK--NSSSAFVKT 191
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ + K LSMGM+ D E AIA+GAT VRIG+ IFG R
Sbjct: 192 QQLFEQNKRYHAHPEQWDTLSMGMSGDIEQAIAAGATIVRIGTAIFGARD 241
>gi|238786366|ref|ZP_04630298.1| alanine racemase [Yersinia bercovieri ATCC 43970]
gi|238712724|gb|EEQ04804.1| alanine racemase [Yersinia bercovieri ATCC 43970]
Length = 198
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 66/196 (33%), Positives = 90/196 (45%), Gaps = 11/196 (5%)
Query: 34 SKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW---DVQLRFIGSLQSNKVSEI 90
SK I A++ GQ F EN +QE K + ++ FIG LQSNK +
Sbjct: 2 SKTKPVTAIEEAIAAGQYAFGENYVQEGVDKIHYFANKPYNHPLEWHFIGPLQSNKSRLV 61
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
F TV R K A LS + + L V IQVN E KSGI +
Sbjct: 62 AENFAWCHTVDRLKIAQRLSAQRPAELPALNVLIQVNISDEQSKSGITLAELPALAANIS 121
Query: 151 QKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSMGMTRDFELAIA 202
+ L++ GLM IP + + + ++ A+ ++ LSMGMT D AIA
Sbjct: 122 ELPNLHLRGLMAIPAPEADYQRQLAVFEQMNQAFLTLKAQYPQMDTLSMGMTDDMPAAIA 181
Query: 203 SGATSVRIGSGIFGER 218
+G+T VRIG+ IFG R
Sbjct: 182 AGSTLVRIGTAIFGAR 197
>gi|293400021|ref|ZP_06644167.1| pyridoxal phosphate enzyme, YggS family [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291306421|gb|EFE47664.1| pyridoxal phosphate enzyme, YggS family [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 216
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 67/210 (31%), Positives = 110/210 (52%), Gaps = 16/210 (7%)
Query: 22 KRP-KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
+R V L+AVSK ++I A + G IF ENK+QE K+K+ P + IG
Sbjct: 10 QRDLPKDVVLIAVSKTHTKEEIDEAYASGCRIFGENKVQEIKEKYDP-----NYHWHMIG 64
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
LQ NKV ++V L D+I+++ + A + + K + +PV ++VN E K+GI+
Sbjct: 65 HLQRNKVKDVVPLVDMIQSLDSLRLAEEIEKQCAKIEKVMPVLVEVNIAREANKTGILLE 124
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECK-------LTKLS 190
+ FV C L+V+GLMC+ P + + F + + + + LS
Sbjct: 125 ECLSFVKQCMSFPHLDVQGLMCVGPMNGTTADIEACFEKMQVLYHTLQNEYGAGRIRYLS 184
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERPC 220
MGM++D+ LA+ G+ +R+G+ IFG+R
Sbjct: 185 MGMSQDYALALKHGSNMIRLGTIIFGQRNY 214
>gi|219848763|ref|YP_002463196.1| alanine racemase domain-containing protein [Chloroflexus aggregans
DSM 9485]
gi|219543022|gb|ACL24760.1| alanine racemase domain protein [Chloroflexus aggregans DSM 9485]
Length = 242
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 76/238 (31%), Positives = 111/238 (46%), Gaps = 21/238 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L +L +++I +A A R D + L+AVSK + + A++ G EN++QEA
Sbjct: 4 TLSRRLAAVREQIAVAAAAAGRQVDEIQLIAVSKTHPPEVVAAAVAAGVTDLGENRVQEA 63
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K L + + IG LQ NK VSLFD+I +V + A L + R +
Sbjct: 64 QQKIAALHHLQPRPRWHLIGHLQRNKAKLAVSLFDLIHSVDSLRLAEALDRHARELDRRM 123
Query: 121 PVYIQVNTGYEIQKSGI----------MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
P+ +QVN E K G + + L V GLM I P + +P
Sbjct: 124 PILLQVNVSGEASKEGFWLPGGITNDAAYRELLPAIEAILALPALEVCGLMTIAPIVDHP 183
Query: 171 ---KPHFYLLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+P+F L + + +LSMGM+ D AIA GAT VRIG IFGER
Sbjct: 184 DAARPYFAALRALRDDLARRYPQASWRELSMGMSDDLSAAIAEGATMVRIGRAIFGER 241
>gi|313886741|ref|ZP_07820448.1| pyridoxal phosphate enzyme, YggS family [Porphyromonas
asaccharolytica PR426713P-I]
gi|312923782|gb|EFR34584.1| pyridoxal phosphate enzyme, YggS family [Porphyromonas
asaccharolytica PR426713P-I]
Length = 221
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 26/232 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L + +I + V LVAVSK + +R A GQ +F EN+ QE
Sbjct: 2 IAERLAEIRSQI----------PEQVQLVAVSKFHPVESVREAYEAGQRLFGENRAQELA 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L + D+Q FIG+LQ NKV IV +IE+V E + + + R L +
Sbjct: 52 EKAPQLPE--DIQWHFIGTLQRNKVKYIVPYVSLIESVDSEALLQEIVKQANRFDRQLRI 109
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC----RQKYQLNVEGLMCIPPAMGN---PKPHFY 175
+Q E KSG+ + V + ++ V GLM + + + F
Sbjct: 110 LLQYKIAQEESKSGLDHAELLALVDHYLATPEWRERITVCGLMGMATLTADKEQIRHEFD 169
Query: 176 LLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + E + +LSMGM+ D+ +A+ +G+T VRIG+ IFGER
Sbjct: 170 TLRALQTELRERYPQISWNELSMGMSSDWPIAVETGSTIVRIGTAIFGERQY 221
>gi|94268049|ref|ZP_01291070.1| Protein of unknown function UPF0001 [delta proteobacterium MLMS-1]
gi|93451754|gb|EAT02518.1| Protein of unknown function UPF0001 [delta proteobacterium MLMS-1]
Length = 232
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats.
Identities = 83/229 (36%), Positives = 119/229 (51%), Gaps = 12/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L K +I +A A R +V LVAVSK V ++I A++ GQ +F E+ LQEA+
Sbjct: 4 IAQNLAAIKARIAAAARRAGRDPQTVRLVAVSKKVAPERIARAVAGGQRLFGESYLQEAE 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + E + FIG LQSNK + F ++E+V R K A L+ R LPV
Sbjct: 64 AKMARVDPEGRLHWHFIGHLQSNKAKAAATHFAMVESVDRLKLAGRLAHYAAAAGRLLPV 123
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
+QVN E +K+G+ P +T+ + + L V GLM +PP + HF L +
Sbjct: 124 LVQVNIAGEARKAGVAPAETRTLLQELDKLPALRVMGLMTMPPWASTAEASRGHFRQLRQ 183
Query: 180 IAR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+A +LSMGM+ DFE+A+ GAT VR+G+ IFG R
Sbjct: 184 LADAMAEAGLLGRHGPVELSMGMSGDFEVAVEEGATLVRVGTAIFGARD 232
>gi|288553147|ref|YP_003425082.1| hypothetical protein BpOF4_00605 [Bacillus pseudofirmus OF4]
gi|288544307|gb|ADC48190.1| hypothetical protein BpOF4_00605 [Bacillus pseudofirmus OF4]
Length = 229
Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats.
Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 16/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + +I + R S+++VAV+K V +++ + A+ G V EN+ +
Sbjct: 1 MSVKENFDKIQSEIASICDRIGRDPASINVVAVTKYVSNERAKEAIDAGVVHLGENRAEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K ++++ V FIGSLQS KV ++ + ++ R A L + R L
Sbjct: 61 LAMKQEDIQEQ--VSWHFIGSLQSKKVKKVAPHISYLHSLDRVSLAKELDKRL---DREL 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K+G+ + +F+ L + GLM + P + +P +P F L
Sbjct: 116 ACFVQVNVSKEESKAGLDIEEVDEFIQELEAYPSLKIIGLMTMAPFVNDPEETRPIFKAL 175
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+I + + T+LSMGM+ D+++AI GAT +RIG+ + G
Sbjct: 176 KKIQLDIQAKNYSHAPCTELSMGMSNDYQVAIEEGATFIRIGTSLVG 222
>gi|71083067|ref|YP_265786.1| hypothetical protein SAR11_0361 [Candidatus Pelagibacter ubique
HTCC1062]
gi|91762507|ref|ZP_01264472.1| hypothetical protein PU1002_04541 [Candidatus Pelagibacter ubique
HTCC1002]
gi|71062180|gb|AAZ21183.1| hypothetical protein SAR11_0361 [Candidatus Pelagibacter ubique
HTCC1062]
gi|91718309|gb|EAS84959.1| hypothetical protein PU1002_04541 [Candidatus Pelagibacter ubique
HTCC1002]
Length = 216
Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats.
Identities = 78/192 (40%), Positives = 111/192 (57%), Gaps = 2/192 (1%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR-KEWDVQLRFIGSLQSNK 86
++AVSK + I + G + F ENK+QEA KW+ ++ + +QL IG LQ+NK
Sbjct: 25 PKIIAVSKTFPIENILPLIEYGHLHFGENKVQEALDKWVHIKNQNPSIQLHLIGRLQTNK 84
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V + +FD I + EK A+ ++ E KQ + ++IQVN G E QKSGI + DF
Sbjct: 85 VKVALRIFDYIHALDSEKLANKIADEQTKQGKKPKIFIQVNIGNENQKSGINKERLSDFY 144
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT 206
C+ L++ G MCIPP N K +F ++EI +E +LSMGM+ D+ AI AT
Sbjct: 145 KFCKNL-NLDIIGTMCIPPNDDNTKKYFSEMNEINQELDFKELSMGMSGDYLEAIRYNAT 203
Query: 207 SVRIGSGIFGER 218
VR+GS IFG R
Sbjct: 204 YVRVGSKIFGSR 215
>gi|118602272|ref|YP_903487.1| hypothetical protein Rmag_0234 [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|118567211|gb|ABL02016.1| Protein of unknown function UPF0001 [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
Length = 212
Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats.
Identities = 76/216 (35%), Positives = 112/216 (51%), Gaps = 6/216 (2%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L+ +++I V+L+AVSK +++ A++ GQ FAEN LQEA
Sbjct: 2 IKDNLEKIQERINQV-----NHTQFVTLIAVSKTRSVDELQQAINTGQKHFAENYLQEAL 56
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ + ++ FIG +QSNK +I FD + +V R K A L+ + K L V
Sbjct: 57 IKINHLKGQ-NLIWHFIGPIQSNKTLKIAKNFDWVHSVDRLKIAKRLNEQRPKNLPNLKV 115
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+Q+N E KSG Q + V L + G MCIP + + + S I +
Sbjct: 116 LLQINIDNEPIKSGASIEQIDELVTHFESLKNLTLRGFMCIPNPSNSAQNFTRMTSIIKQ 175
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+RD E AI +GAT +RIG+ IFG+R
Sbjct: 176 YPNLDALSMGMSRDLESAITNGATFLRIGTDIFGKR 211
>gi|47094013|ref|ZP_00231745.1| conserved hypothetical protein TIGR00044 [Listeria monocytogenes
str. 4b H7858]
gi|254826213|ref|ZP_05231214.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|254854032|ref|ZP_05243380.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|254933459|ref|ZP_05266818.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|254992794|ref|ZP_05274984.1| hypothetical protein LmonocytoFSL_06864 [Listeria monocytogenes FSL
J2-064]
gi|300765466|ref|ZP_07075447.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
gi|47017618|gb|EAL08419.1| conserved hypothetical protein TIGR00044 [Listeria monocytogenes
str. 4b H7858]
gi|258607424|gb|EEW20032.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|293585020|gb|EFF97052.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|293595454|gb|EFG03215.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|300513777|gb|EFK40843.1| conserved hypothetical protein [Listeria monocytogenes FSL N1-017]
gi|328466094|gb|EGF37264.1| hypothetical protein LM1816_05288 [Listeria monocytogenes 1816]
gi|328472680|gb|EGF43538.1| hypothetical protein LM220_03462 [Listeria monocytogenes 220]
gi|332312481|gb|EGJ25576.1| YggS family pyridoxal phosphate enzyme [Listeria monocytogenes str.
Scott A]
Length = 229
Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQPEDVTLVAVTKTIDVAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K + L + D+ +IGSLQ+ KV +++ D + ++ R A + K +
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDRSSLAKEIEKRATK---PV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-NPKPH--FYLL 177
++QVN E K G + F+ + + GLM + P + + H F+ L
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQE-ANFTFIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGI 214
++ +E T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVGRAL 221
>gi|300854251|ref|YP_003779235.1| hypothetical protein CLJU_c10650 [Clostridium ljungdahlii DSM
13528]
gi|300434366|gb|ADK14133.1| conserved hypothetical protein [Clostridium ljungdahlii DSM 13528]
Length = 243
Score = 245 bits (627), Expect = 3e-63, Method: Composition-based stats.
Identities = 73/232 (31%), Positives = 109/232 (46%), Gaps = 21/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+S+ L ++++++ +V+LVAVSK + I+ A G F ENK+QE
Sbjct: 22 LSIEQNLSRIEEELKD---------KNVTLVAVSKTKPIEDIQKAYDAGIRDFGENKVQE 72
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + D++ IG LQ NKV IV +I ++ + + L Q
Sbjct: 73 LTNKIPNLPQ--DIRWHLIGHLQRNKVKYIVGKVYLIHSLDSIRLLNELEKHYKDQKLIA 130
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLS 178
IQ+N G E K+G+ + +D + C + V+GLM + P K +F L
Sbjct: 131 NTLIQINIGLEESKTGLPLEELEDLLKACENCTNVKVKGLMAVIPKGDEESCKNYFQKLK 190
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
I K + LSMGMT D+++AI GAT VRIG GIFG+R
Sbjct: 191 SIFDGLKKREFNNISMNILSMGMTHDYKIAIKEGATLVRIGEGIFGKRNYNN 242
>gi|110798840|ref|YP_696537.1| hypothetical protein CPF_2108 [Clostridium perfringens ATCC 13124]
gi|168206092|ref|ZP_02632097.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens E
str. JGS1987]
gi|168210783|ref|ZP_02636408.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens B
str. ATCC 3626]
gi|168215212|ref|ZP_02640837.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens
CPE str. F4969]
gi|168215482|ref|ZP_02641107.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens
NCTC 8239]
gi|110673487|gb|ABG82474.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens
ATCC 13124]
gi|170662426|gb|EDT15109.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens E
str. JGS1987]
gi|170711154|gb|EDT23336.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens B
str. ATCC 3626]
gi|170713382|gb|EDT25564.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens
CPE str. F4969]
gi|182382413|gb|EDT79892.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens
NCTC 8239]
Length = 219
Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 109/231 (47%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L F +KI +V L+AVSK +++ A G F ENK+QE
Sbjct: 1 MDIKENLTKFTEKI----------PSNVQLIAVSKTRTIEEMEEAYEFGIRKFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + DV+ IG LQ+NKV IV +I+++ K + K ++
Sbjct: 51 IIRKFDEFHQ--DVEWHLIGHLQTNKVKYIVDKVHLIQSLDSIKLLKEIEKVYGKHNKIA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLS 178
IQVN G E QK GI+ + + + +NV G+M I P + +F
Sbjct: 109 NTLIQVNIGREEQKYGILEEELDELIEAIEACNNVNVLGIMTIIPKGTEEECRKYFSKTH 168
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + K+ LSMGM+ D+E+AI G+ VRIG GIFG+R +
Sbjct: 169 KLFCELKEKKFKNIKMDILSMGMSGDYEIAIEEGSNMVRIGQGIFGKRLYK 219
>gi|89101245|ref|ZP_01174068.1| hypothetical protein B14911_01990 [Bacillus sp. NRRL B-14911]
gi|89084038|gb|EAR63216.1| hypothetical protein B14911_01990 [Bacillus sp. NRRL B-14911]
Length = 223
Score = 245 bits (626), Expect = 3e-63, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ ++KI+ + + R V+++AV+K V +++ + A+S G EN+
Sbjct: 1 MKVEENLKSIQEKIDEACKRSGRNPGEVTIIAVTKYVSTERAKEAVSAGIGNLGENRDDG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + + FIGSLQ+ KV I+ + D I ++ R A + + +
Sbjct: 61 MLAKHEEIGHA--AKWHFIGSLQTRKVKNIIGIADYIHSLDRLSLAKEIDKRAEE---TV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
IQVN E K G+ P + FV ++ GLM + P + + F L
Sbjct: 116 QCLIQVNASGEESKQGLSPEEVIPFVKDLEAYPYISAAGLMTMAPLTDDEEVLRHCFRTL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ + + +LSMGM+ DF +A+ GAT VRIG+ + GE
Sbjct: 176 KTLQKNIQDLNLAHAPCRELSMGMSNDFGIAVEEGATMVRIGTALVGE 223
>gi|158338463|ref|YP_001519640.1| hypothetical protein AM1_5365 [Acaryochloris marina MBIC11017]
gi|158308704|gb|ABW30321.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
Length = 228
Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats.
Identities = 64/206 (31%), Positives = 99/206 (48%), Gaps = 11/206 (5%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
SV L+AVSK + + IR A G F E+++QEA +K L+ ++ IG LQS
Sbjct: 21 PGSVRLIAVSKYMPAALIREAYDAGLRDFGESRVQEAIQKQAELQDLSELTWHLIGHLQS 80
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK V FD I +V A L+ + + + +QV + K G K
Sbjct: 81 NKAKLAVRHFDWIHSVDSLALAQRLNRLVESEQHSPQLCLQVKPLPDPDKFGWTFAGLKA 140
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIAREC--------KLTKLSMGM 193
+ + L+ GLM I P + F+ ++A++ L +LSMGM
Sbjct: 141 DLPALKACAHLHWRGLMTILPMGLSSHEILNAFHETQQLAQDITQQFPEDFTLHELSMGM 200
Query: 194 TRDFELAIASGATSVRIGSGIFGERP 219
+ D++LA+ +GAT VR+G +FG+RP
Sbjct: 201 SNDYQLAVQAGATMVRVGRRLFGDRP 226
>gi|182626136|ref|ZP_02953896.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens D
str. JGS1721]
gi|177908573|gb|EDT71098.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens D
str. JGS1721]
Length = 219
Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 109/231 (47%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L F +KI +V L+AVSK +++ A G F ENK+QE
Sbjct: 1 MDIKENLTKFTEKI----------PSNVQLIAVSKTRTIEEMEEAYEFGIRKFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + DV+ IG LQ+NKV IV +I+++ K + K ++
Sbjct: 51 IIRKFDEFYQ--DVEWHLIGHLQTNKVKYIVDKVHLIQSLDSIKLLKEIEKVYGKHNKIA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLS 178
IQVN G E QK GI+ + + + +NV G+M I P + +F
Sbjct: 109 NTLIQVNIGREEQKYGILEEELDELIEAIEACNNVNVLGIMTIIPKGTEEECRKYFSKTH 168
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + K+ LSMGM+ D+E+AI G+ VRIG GIFG+R +
Sbjct: 169 KLFCELKEKKFKNIKMDILSMGMSGDYEIAIEEGSNMVRIGQGIFGKRLYK 219
>gi|332667877|ref|YP_004450665.1| hypothetical protein Halhy_5969 [Haliscomenobacter hydrossis DSM
1100]
gi|332336691|gb|AEE53792.1| protein of unknown function UPF0001 [Haliscomenobacter hydrossis
DSM 1100]
Length = 252
Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats.
Identities = 60/208 (28%), Positives = 93/208 (44%), Gaps = 16/208 (7%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
LVAVSK + I GQ IF ENK+QE K+ L K D++ IG LQSNKV
Sbjct: 45 RLVAVSKTQPHEAIMQLYEQGQRIFGENKVQELVPKYEALPK--DIEWHLIGHLQSNKVK 102
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
I +I +V K + + + + R + +Q E K G+ N+ +
Sbjct: 103 FIAPFVAMIHSVDSLKLLAEIDKQAAQHQRTIDCLLQFKINDEETKFGLDINEAYALLES 162
Query: 149 C--RQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIARECK---------LTKLSMGMT 194
+ + G+M + + + + F L +I K ++SMGM+
Sbjct: 163 ATYPNLQHIRICGVMGMASFVEDKAQIQREFKALKQIFDTLKARYFPNEASFKEISMGMS 222
Query: 195 RDFELAIASGATSVRIGSGIFGERPCQT 222
D+ +A+A G+T VRIG+ +FG R
Sbjct: 223 DDYSIAVAEGSTLVRIGTLLFGARNYGN 250
>gi|297568540|ref|YP_003689884.1| alanine racemase domain protein [Desulfurivibrio alkaliphilus AHT2]
gi|296924455|gb|ADH85265.1| alanine racemase domain protein [Desulfurivibrio alkaliphilus AHT2]
Length = 250
Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats.
Identities = 91/249 (36%), Positives = 128/249 (51%), Gaps = 31/249 (12%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ +G L K +I +A + R SV LVAVSK V++++I A++ GQ +F EN LQ
Sbjct: 1 MTDIGANLAAVKARIAAAARRSGRDPASVRLVAVSKRVEAERIVTAVAAGQRLFGENYLQ 60
Query: 60 EAKKKWIPLRK-----------------EWDVQLRFIGSLQSNKVSEIVSL-FDVIETVS 101
EA+ K + + + +V FIG LQSNK + F ++ET+
Sbjct: 61 EAQAKISRVNELLAGPEAGPEASLDPTGKAEVSWHFIGHLQSNKAKAAATTDFTMVETID 120
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161
R K A L R LPV +QVN G E QK+G+MP Q + + + L V GLM
Sbjct: 121 RLKLARALDRHAAAAGRLLPVLVQVNVGGEAQKAGVMPEQAPELLRSLAELPALRVMGLM 180
Query: 162 CIPPAMGNP---KPHFYLLSEIARE---------CKLTKLSMGMTRDFELAIASGATSVR 209
+PP +P +PHF L ++A E LSMGM+ DFE+A+ GA VR
Sbjct: 181 TMPPMAAHPEESRPHFARLRQLAEEFARQGLLGAHGSPLLSMGMSADFEVAVEEGANLVR 240
Query: 210 IGSGIFGER 218
+G+ IFG R
Sbjct: 241 VGTAIFGPR 249
>gi|114799476|ref|YP_762223.1| alanine racemase domain-containing protein [Hyphomonas neptunium
ATCC 15444]
gi|114739650|gb|ABI77775.1| alanine racemase, N-terminal domain protein [Hyphomonas neptunium
ATCC 15444]
Length = 222
Score = 245 bits (626), Expect = 4e-63, Method: Composition-based stats.
Identities = 89/192 (46%), Positives = 122/192 (63%), Gaps = 1/192 (0%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVS 88
L+AVSK + I AL+ GQ +F EN++QEA++ W R+ + D+ L IG LQ+NK +
Sbjct: 30 LIAVSKFQPDEAIEAALAAGQRVFGENRVQEAQQHWQARRETYADLTLHLIGPLQTNKAA 89
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
+ V LFDVI+T+ REK A L+ M K+ R + IQVNTG E QK+G+ P++ +
Sbjct: 90 DAVRLFDVIQTLDREKLADALAAAMEKEGRRPKMLIQVNTGEEDQKAGVFPSKVGALLRY 149
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSV 208
R+ L V+GLMCIPP PHF LL +IA++ L LSMGM+ D+ELA GAT V
Sbjct: 150 ARESANLEVDGLMCIPPVDEPAGPHFALLKKIAKDYGLPVLSMGMSGDYELAARYGATHV 209
Query: 209 RIGSGIFGERPC 220
R+G+ FGER
Sbjct: 210 RVGTAFFGERNT 221
>gi|237654358|ref|YP_002890672.1| alanine racemase [Thauera sp. MZ1T]
gi|237625605|gb|ACR02295.1| alanine racemase domain protein [Thauera sp. MZ1T]
Length = 237
Score = 244 bits (625), Expect = 4e-63, Method: Composition-based stats.
Identities = 76/207 (36%), Positives = 103/207 (49%), Gaps = 10/207 (4%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
V L+AVSK ++ +R A + GQ F EN +QE K LR ++ FIG LQ
Sbjct: 25 DPADVKLLAVSKTWPAEAVREAAAAGQRAFGENYVQEGVDKVEALRA-LGLEWHFIGPLQ 83
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
SNK + + FD + + R K A LS + L V IQVN E KSG+ P++
Sbjct: 84 SNKTRPVANAFDWVHGIDRLKIAERLSAQRDVHLPPLDVCIQVNVSGEDSKSGVAPDEAG 143
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-----LTKLSMGMTR 195
+L + GLMCIP + + F +L + E + L LSMGM+
Sbjct: 144 ALAHAVAALPRLRLRGLMCIPEPSADEAVLRARFAVLRGLHDELRAAGLALDTLSMGMSH 203
Query: 196 DFELAIASGATSVRIGSGIFGERPCQT 222
D E AIA GA VR+G+ IFGER +T
Sbjct: 204 DLEPAIAEGANIVRVGTAIFGER-ART 229
>gi|304437222|ref|ZP_07397182.1| YggS family pyridoxal phosphate enzyme [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304369714|gb|EFM23379.1| YggS family pyridoxal phosphate enzyme [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 239
Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats.
Identities = 67/233 (28%), Positives = 108/233 (46%), Gaps = 19/233 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPK----DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
+G ++Q + +I + A+R V L+AV+K ++ A+ G + EN++
Sbjct: 7 IGEQIQKVRAEIMAA--RARRTHVSKDAPVELIAVTKNHPVAAMQEAIDAGIMNIGENRI 64
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QEA K L +E V+ IG LQ+NK V FD+I +V A ++ K +
Sbjct: 65 QEALDKAETLERE--VKWHLIGHLQTNKAKYAVRQFDLIHSVDSVHLAQAVNRAAEKFGK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+ +QVN E KSG+ + + + ++G MCI P + +P F
Sbjct: 123 VQNILVQVNLAREESKSGVYREDLDELLAAIDGMDSVRLQGFMCIAPNYEDVEQCRPLFR 182
Query: 176 LLSEIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E+ K + LSMGMT D+ +A+ GA VR+G+ IFG R
Sbjct: 183 AMYELYGTIKAAEPHKADIRYLSMGMTHDYRIAVEEGANLVRVGTAIFGARNY 235
>gi|78358629|ref|YP_390078.1| hypothetical protein Dde_3590 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78221034|gb|ABB40383.1| Protein of unknown function UPF0001 [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 248
Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats.
Identities = 75/236 (31%), Positives = 117/236 (49%), Gaps = 20/236 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQE 60
+L +L+ +++++++ + R ++ V+LVAVSK + + G +F E+ +QE
Sbjct: 11 ALCGRLESVRRRLDDAVRASGRKQEDVTLVAVSKFHPAAAVEALARLAGHAVFGESYVQE 70
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL-------EM 113
A++K L + FIG +QS K ++ F ++ TV EK A L E
Sbjct: 71 AQEKQQALAG-LALSWHFIGHVQSRKARDVAGRFALVHTVDSEKLACKLHQAVQPPDGEQ 129
Query: 114 IKQSRFL-PVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAM---G 168
+ +R + V +QVN G E QKSG+ L + GLMC+PP
Sbjct: 130 PEGARTVQDVLVQVNIGCEPQKSGVAAGDGLLRLADAVAGMSGLRLRGLMCMPPLTCQGE 189
Query: 169 NPKPHFYLLSEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+P+F L + +L LSMGM+ DFE A+A GAT VR+G+ IFGER
Sbjct: 190 EARPYFAQLRGLRDSLEQRLGMRLPHLSMGMSHDFEQAVAEGATLVRVGTDIFGER 245
>gi|313888289|ref|ZP_07821960.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845692|gb|EFR33082.1| pyridoxal phosphate enzyme, YggS family [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 236
Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats.
Identities = 69/236 (29%), Positives = 109/236 (46%), Gaps = 17/236 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + L + IE + + +D V L+AVSK + I G F ENK+QE
Sbjct: 1 MDLKDNLIKLYEDIEIAKDKSNFNRD-VKLIAVSKTHPVEMIDEFNKLGVKDFGENKVQE 59
Query: 61 AKKKWIPLR-----KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K R K ++ IG+LQ+NKV I + +I+++ R K A +
Sbjct: 60 LVSKIEDKRIEESLKNNELNFHLIGNLQTNKVKYIYNKVKLIQSLDRIKLAKEIDKRAKN 119
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KP 172
+ +Q+N G E K GI ++T+DF+ + ++GLM I P + +
Sbjct: 120 DDIIVDCLVQINIGDEDSKFGIKYDETEDFIYELLDYKNIKIKGLMAIAPNTEDEFLLRK 179
Query: 173 HFYLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F ++ E ++ LSMGM+ DF+LAI G+ +R+GS +FG R
Sbjct: 180 LFEKMNNKFEEISSKAYEGVEMKYLSMGMSHDFKLAIEEGSNMIRVGSKLFGNRNY 235
>gi|281424386|ref|ZP_06255299.1| pyridoxal phosphate enzyme, YggS family [Prevotella oris F0302]
gi|281401655|gb|EFB32486.1| pyridoxal phosphate enzyme, YggS family [Prevotella oris F0302]
Length = 224
Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats.
Identities = 64/231 (27%), Positives = 96/231 (41%), Gaps = 26/231 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L V LVA+SK + I A + GQ IF E+ QE
Sbjct: 4 DVAKNLHEVL----------GNLPKDVRLVAISKYHPCEYIEAAYAEGQRIFGESHEQEL 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K K L K D+Q FIG LQ+NKV I +IE V K ++ K +R +
Sbjct: 54 KLKVEKLPK--DIQWHFIGHLQTNKVKYIAPYISMIEAVDSMKLLKEINKHANKHNRIIK 111
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQ--KYQLNVEGLMCIPPAMGNPKP---HFYL 176
V ++++ E K G+ P+ ++ + + + GLM + N F
Sbjct: 112 VLLELHIAEEETKYGLTPDACRELLAEGEWRTLDHVQICGLMMMASNTDNQDQIAGEFET 171
Query: 177 LSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ E K + S GM+ D++ AI G+T VR+G+ IFG R
Sbjct: 172 AARFFNEIKTHYFADSDAFKERSWGMSHDYKTAICHGSTMVRVGTTIFGPR 222
>gi|150021415|ref|YP_001306769.1| alanine racemase domain-containing protein [Thermosipho
melanesiensis BI429]
gi|149793936|gb|ABR31384.1| alanine racemase domain protein [Thermosipho melanesiensis BI429]
Length = 228
Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats.
Identities = 68/217 (31%), Positives = 110/217 (50%), Gaps = 9/217 (4%)
Query: 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69
I+ A+ R +++ LVAVSK + I+ A G IF EN QE + K L
Sbjct: 12 VLDSIKEKALEVGRDYNNIKLVAVSKTFPVEVIKEAYEIGIRIFGENYAQELRDK-SKLL 70
Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
+ +D++ +IG +Q NK+ IV + +I +V+R + ++ K ++ + IQVN
Sbjct: 71 ESYDIEWHYIGRIQLNKLKYIVPVSRLIHSVTRIEELKEINKLCRKYNKVQEILIQVNIS 130
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIAREC-- 184
E K+G+ P++ DF+ ++ + G M + P N + F + +
Sbjct: 131 GEETKAGLKPDEVGDFLRETVDFERVKIVGFMTMAPFTDNKEIIRNVFKNARVLLEKFSS 190
Query: 185 ---KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +LSMGM+ D+ +AI GAT +RIGS IFGER
Sbjct: 191 EFSNLKELSMGMSNDYLIAIEEGATILRIGSKIFGER 227
>gi|330823083|ref|YP_004386386.1| hypothetical protein Alide2_0451 [Alicycliphilus denitrificans
K601]
gi|329308455|gb|AEB82870.1| protein of unknown function UPF0001 [Alicycliphilus denitrificans
K601]
Length = 240
Score = 244 bits (625), Expect = 5e-63, Method: Composition-based stats.
Identities = 78/236 (33%), Positives = 108/236 (45%), Gaps = 15/236 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ LQ ++I + A RP SV+L+AVSK ++ + A GQ F EN +QEA
Sbjct: 3 TIDRNLQRVHERIAQACAAAGRPPGSVALLAVSKTFGAEAVHAAALAGQRAFGENYIQEA 62
Query: 62 KKKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K LR Q IG +QSNK + FD +TV R K A LS +
Sbjct: 63 VEKMAALRALAPALALQWHCIGPIQSNKTRLVAEHFDWAQTVDRLKIAQRLSEQRPAHLP 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFY 175
L V IQVN KSG+ P+ + +L + G+M IP P +
Sbjct: 123 PLMVCIQVNVDGGATKSGVGPHDAAVLAEAVARLPRLVLRGVMSIPDDAPTFEAQRALHE 182
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + K LSMGMT D E A+A+G+T VR+GSG+FG R
Sbjct: 183 RAAAVFHHIKAQGFEGLGQFDTLSMGMTGDLEAAVAAGSTMVRVGSGVFGARQYAA 238
>gi|33151535|ref|NP_872888.1| K+ uptake protein [Haemophilus ducreyi 35000HP]
gi|33147755|gb|AAP95277.1| K+ uptake protein [Haemophilus ducreyi 35000HP]
Length = 234
Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats.
Identities = 81/233 (34%), Positives = 113/233 (48%), Gaps = 13/233 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L +Q+I+ +R ++V L+AVSK + I A++ GQ F EN +QE
Sbjct: 1 MSVSENLSTVRQQIQQICRQFER--ENVRLLAVSKTKSIEAIEAAIAAGQTAFGENYVQE 58
Query: 61 AKKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
A +K K ++ FIG LQSNK + FD ++T+ R K A L+L+
Sbjct: 59 AIEKISYFNQQNKSKRLEWHFIGPLQSNKTRLVAENFDWLQTLDRLKIAERLNLQRPADL 118
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMG--NPKPHF 174
L V IQ+N E K+GI P Q +F L + GLM IP PA+ K F
Sbjct: 119 APLNVLIQINISDEASKAGITPQQMMNFAEAINALPHLCLRGLMAIPKPAVDIAQQKAVF 178
Query: 175 YLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ ++ K LSMGM+ D AI G+T VRIG+ IFG R
Sbjct: 179 QQMQQLFDCLKAEFAQVDTLSMGMSDDMLSAIECGSTMVRIGTAIFGVRDYSA 231
>gi|38234316|ref|NP_940083.1| hypothetical protein DIP1745 [Corynebacterium diphtheriae NCTC
13129]
gi|38200579|emb|CAE50274.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length = 221
Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats.
Identities = 70/214 (32%), Positives = 104/214 (48%), Gaps = 10/214 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+ Q+ +KI +A + R + L+AVSK ++ A+ G +F EN+ QE +K
Sbjct: 13 RYQIVSEKIAAAAQRSGRKPSDIRLIAVSKNHPVAAVQEAMDAGVTVFGENRPQELVEKA 72
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ + IG LQ NK +IV + + A L + L V++Q
Sbjct: 73 QAIPNAY---WCAIGRLQRNKAKDIVRYAQEFHALDSLRLAQALDQRL---DHQLDVFVQ 126
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIAR 182
VNT +E QK GI P++ + F+ Q L+V GLM + P + F L E+
Sbjct: 127 VNTSHEEQKGGIAPSEVEPFLAELSQFSHLHVRGLMTMARNDPCERVVRASFSELRELRD 186
Query: 183 E-CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+LSMGM+ DFE AI GATSVR+GS +F
Sbjct: 187 ALLPHGELSMGMSGDFEWAIEEGATSVRVGSALF 220
>gi|254568594|ref|XP_002491407.1| Single-domain racemase, possibly non-specific due to the lack of
the second domain [Pichia pastoris GS115]
gi|238031204|emb|CAY69127.1| Single-domain racemase, possibly non-specific due to the lack of
the second domain [Pichia pastoris GS115]
Length = 269
Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats.
Identities = 77/236 (32%), Positives = 108/236 (45%), Gaps = 20/236 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + +I + RP V+LV VSK+ S I G F EN +QE
Sbjct: 37 ELLENVNHILDQITSVKSPNGRP---VNLVCVSKLKPSSDIMALYDAGFRHFGENYVQEL 93
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD---VIETVSREKTASLLSLEMIKQSR 118
K L K D++ FIG LQ+NK ++ + D +ET+ K A+ L+
Sbjct: 94 VSKAQELPK--DIKWHFIGGLQTNKCKDLATRIDNLYAVETIDSIKKANKLNSSRDASKP 151
Query: 119 FLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQ-KYQLNVEGLMCIPPAM-----GNPK 171
+ V+IQVNT E QKSGI + + + L ++GLM I G
Sbjct: 152 KINVFIQVNTSGEEQKSGISSYDDLLALAKVIKNDCPNLTLKGLMTIGSIQQSTAAGERN 211
Query: 172 PHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
F L+ + + +LSMGM+ DFE AI G+TSVR+GS IFG RP +
Sbjct: 212 KDFDQLTAHNEKLESDLGTTLELSMGMSSDFEQAIRQGSTSVRVGSSIFGARPPRN 267
>gi|328352082|emb|CCA38481.1| UPF0001 protein PM0112 [Pichia pastoris CBS 7435]
Length = 246
Score = 244 bits (624), Expect = 6e-63, Method: Composition-based stats.
Identities = 77/236 (32%), Positives = 108/236 (45%), Gaps = 20/236 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + +I + RP V+LV VSK+ S I G F EN +QE
Sbjct: 14 ELLENVNHILDQITSVKSPNGRP---VNLVCVSKLKPSSDIMALYDAGFRHFGENYVQEL 70
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD---VIETVSREKTASLLSLEMIKQSR 118
K L K D++ FIG LQ+NK ++ + D +ET+ K A+ L+
Sbjct: 71 VSKAQELPK--DIKWHFIGGLQTNKCKDLATRIDNLYAVETIDSIKKANKLNSSRDASKP 128
Query: 119 FLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQ-KYQLNVEGLMCIPPAM-----GNPK 171
+ V+IQVNT E QKSGI + + + L ++GLM I G
Sbjct: 129 KINVFIQVNTSGEEQKSGISSYDDLLALAKVIKNDCPNLTLKGLMTIGSIQQSTAAGERN 188
Query: 172 PHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
F L+ + + +LSMGM+ DFE AI G+TSVR+GS IFG RP +
Sbjct: 189 KDFDQLTAHNEKLESDLGTTLELSMGMSSDFEQAIRQGSTSVRVGSSIFGARPPRN 244
>gi|226224637|ref|YP_002758744.1| hypothetical protein Lm4b_02052 [Listeria monocytogenes Clip81459]
gi|225877099|emb|CAS05811.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
Length = 229
Score = 244 bits (624), Expect = 7e-63, Method: Composition-based stats.
Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQPEDVTLVAVTKTIDVAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K + L + D+ +IGSLQ+ KV +++ D + ++ R A + KQ +
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDRSSLAKEIEKRATKQ---V 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-NPKPH--FYLL 177
++QVN E K G + F+ + + GLM + P + + H F+ L
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQE-ANFTFIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGI 214
++ +E T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVGRAL 221
>gi|299140885|ref|ZP_07034023.1| pyridoxal phosphate enzyme, YggS family [Prevotella oris C735]
gi|298577851|gb|EFI49719.1| pyridoxal phosphate enzyme, YggS family [Prevotella oris C735]
Length = 224
Score = 244 bits (624), Expect = 7e-63, Method: Composition-based stats.
Identities = 65/231 (28%), Positives = 96/231 (41%), Gaps = 26/231 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L V LVA+SK + I A + GQ IF E+ QE
Sbjct: 4 DVAKNLHEVL----------GNLPKDVRLVAISKYHPCEYIEAAYAEGQRIFGESHEQEL 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K K L K D+Q FIG LQ+NKV I +IE V K ++ K +R +
Sbjct: 54 KLKVEKLPK--DIQWHFIGHLQTNKVKYIAPYISMIEAVDSMKLLKEINKHANKHNRIIK 111
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
V ++++ E K G+ P+ ++ + R + + GLM + N F
Sbjct: 112 VLLELHIAEEETKYGLTPDACRELLADGEWRTLDHVQICGLMMMASNTDNQDQIASEFET 171
Query: 177 LSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ E K S GM+ D++ AI G+T VR+G+ IFG R
Sbjct: 172 AARFFDEIKAHYFADSDAFKDRSWGMSHDYKTAICHGSTMVRVGTTIFGPR 222
>gi|226313410|ref|YP_002773304.1| hypothetical protein BBR47_38230 [Brevibacillus brevis NBRC 100599]
gi|226096358|dbj|BAH44800.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 232
Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats.
Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 13/223 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +LQ + +I+ + A R ++ V ++AV+K VD+ I L+ G EN++Q+A
Sbjct: 8 LKERLQSIEARIQAACDRANRKREEVKIIAVTKYVDADAIGDLLAVGVENIGENRVQDAL 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + FIG LQ+NK E+V F I ++ R A L+ +
Sbjct: 68 PK-HELHGNKGI-WHFIGHLQTNKAKEVVGKFPYIHSLDRLSLAQELNRRGEALDHVVKC 125
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++Q+N E K G+ PN F+ +++ GLM + P + N + + +
Sbjct: 126 FLQINISGEETKFGLSPNDVLAFLRETSNMKHISIVGLMTMAPVVENQEEARQVFRGLYE 185
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
++ +LSMGM+ DFE+AI GAT +R+GS +
Sbjct: 186 WKQRINEMAFPHAQVEELSMGMSSDFEVAIEEGATYIRLGSVL 228
>gi|156538527|ref|XP_001607241.1| PREDICTED: similar to proline synthetase co-transcribed
bacterial-like protein [Nasonia vitripennis]
Length = 247
Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats.
Identities = 78/246 (31%), Positives = 111/246 (45%), Gaps = 28/246 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
+ LQ + KI + AKR + LVAVSK ++ + A GQ F EN
Sbjct: 3 DIATNLQAIRDKIVAA--SAKRALEYKYFEPQLVAVSKFHPAEAVITAYEAGQKHFGENY 60
Query: 58 LQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLE 112
+ E K L K D++ FIG LQ + V+++ V+ ++ETV EK A+ L
Sbjct: 61 VNELADKANSSDILEKCKDIRWHFIGHLQKSNVNKLLKVANLHIVETVDSEKIATALDSA 120
Query: 113 MIK----QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAM 167
K L + +QVNT E KSG V + L GLM I
Sbjct: 121 WPKFRKSDDAKLKIMVQVNTSREEAKSGCEVENASSMVKYIFEKCPNLEFTGLMTIGEYG 180
Query: 168 GN----PKPHFYLLSE----IARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ P P F L + + + L +LSMGM+ D+E AI G++ VR+G+ IF
Sbjct: 181 YDVSKGPNPDFLALKDVKAKVCEDLGLDTKKVELSMGMSTDYEHAIELGSSLVRVGTAIF 240
Query: 216 GERPCQ 221
GERP +
Sbjct: 241 GERPKK 246
>gi|190346825|gb|EDK39002.2| hypothetical protein PGUG_03100 [Meyerozyma guilliermondii ATCC
6260]
Length = 256
Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats.
Identities = 79/238 (33%), Positives = 114/238 (47%), Gaps = 25/238 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + Q++ ++ +V LVAVSK+ + I + G F EN +QE
Sbjct: 23 LISAYEAISQRVSTTS-----NSRNVRLVAVSKLKPASDILALYNHGVRHFGENYVQELI 77
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD---VIETVSREKTASLLS-LEMIKQSR 118
K L K D++ FIG LQ+ K ++ D +ET+ K L + +
Sbjct: 78 GKAQELPK--DIKWHFIGGLQTGKCKDLAKGIDNLYAVETIDSLKKCKKLDTARLNAEKD 135
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-----QKYQLNVEGLMCIPPAM----GN 169
L VY+Q+NT E QKSG + TKD R + +L ++GLM I
Sbjct: 136 PLNVYLQINTSGEEQKSGFSLSDTKDLKDTVRFLMSDECKKLKLQGLMTIGSFEASTSDE 195
Query: 170 PKPHFYLLS----EIARECKLT-KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
F LS E+ +E L +LSMGM+ DFE AI G+TSVR+GS IFG RP ++
Sbjct: 196 ENKDFKALSTVKTELDKEFNLDLELSMGMSNDFEQAIKQGSTSVRVGSSIFGARPPKS 253
>gi|321475478|gb|EFX86441.1| hypothetical protein DAPPUDRAFT_313114 [Daphnia pulex]
Length = 316
Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats.
Identities = 76/247 (30%), Positives = 113/247 (45%), Gaps = 35/247 (14%)
Query: 3 LGNKLQVFKQKI---------ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIF 53
+ L+ K K+ E +A A +LVAVSK + A GQ F
Sbjct: 7 IKENLEFVKAKMMAASLKRVQEAAAFKA------PTLVAVSKTKPVDDVIEAYHGGQRHF 60
Query: 54 AENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEIVS--LFDVIETVSREKTASL 108
EN + E K L + D++ IG LQSNK+ ++ S ++ET+ K A
Sbjct: 61 GENYIPELGGKSTDPKILEECPDIRWHMIGHLQSNKMKKLASVQNLYMVETIDSVKIADA 120
Query: 109 LSLEMIKQSR--FLPVYIQVNTGYEIQKSGIMPNQTKDFVI-LCRQKYQLNVEGLMCIPP 165
L+ IK ++ L V +QV T E KSG+ P++ + + +L GLM I
Sbjct: 121 LNKSWIKLNKMEKLKVMVQVKTSDEETKSGVEPSEAIKLAKFIIEKCPELEFCGLMTIGA 180
Query: 166 AMGN----PKPHFYLLSEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSG 213
+ + P P F + E +E +LSMGM+ D+E AI G+T+VR+GS
Sbjct: 181 SNYDVSLGPNPDFLKMIECHKEITCIPDLPKESLELSMGMSSDYEHAIELGSTNVRVGSL 240
Query: 214 IFGERPC 220
IFG+R
Sbjct: 241 IFGQREY 247
>gi|288802419|ref|ZP_06407858.1| pyridoxal phosphate enzyme, YggS family [Prevotella melaninogenica
D18]
gi|288334947|gb|EFC73383.1| pyridoxal phosphate enzyme, YggS family [Prevotella melaninogenica
D18]
Length = 223
Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats.
Identities = 60/231 (25%), Positives = 106/231 (45%), Gaps = 26/231 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ N L D V LVA+SK ++ + VA GQ IF E+++QE
Sbjct: 3 DVANNLHEVL----------GNLPDGVKLVAISKFHPNEYLEVAYREGQRIFGESQVQEL 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L K D++ FIG LQ+NKV I ++E V K ++ + K +R +
Sbjct: 53 SRKVETLPK--DIEWHFIGHLQTNKVKYIAPYISMVEAVDSLKLLKEINKQAAKYNRVIN 110
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPK-------- 171
V ++++ E K G P+ ++ + ++ +++ GLM + + +
Sbjct: 111 VLLELHIAEEETKYGFTPDACRELLESGEWKELKNVHISGLMMMASNVDDRNQIKKEMML 170
Query: 172 --PHFYLLSE--IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L A + + + S GM+ D+++A+ +T VR+G+ IFG R
Sbjct: 171 AADLFDELKAKYFADDPEFKERSWGMSHDYDIAVECRSTMVRVGTTIFGPR 221
>gi|238927883|ref|ZP_04659643.1| TIM-barrel fold protein [Selenomonas flueggei ATCC 43531]
gi|238884216|gb|EEQ47854.1| TIM-barrel fold protein [Selenomonas flueggei ATCC 43531]
Length = 234
Score = 244 bits (623), Expect = 8e-63, Method: Composition-based stats.
Identities = 67/231 (29%), Positives = 109/231 (47%), Gaps = 15/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDS--VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+G +++ + +I + R V L+AV+K ++ A+ G + EN++QE
Sbjct: 2 IGEQIRKVQAEIMAARARRTRVSKDAPVELIAVTKNHPVTAMQEAIDAGLMNIGENRIQE 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L +E V+ IG LQ+NK V LFD+I +V A + K +
Sbjct: 62 AMDKAETLERE--VKWHLIGHLQTNKAKHAVRLFDLIHSVDSVHLARAIDRAAEKFGKVQ 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+ +QVN E KSGI ++ + + ++G MCI P + +P F +
Sbjct: 120 NILVQVNLAREESKSGIYREDLEELLAAIDGMDSIRLQGFMCIAPNYEDVEQCRPLFRAM 179
Query: 178 SEIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ ++ K + LSMGMT D+ +A+ GA VR+G+ IFG R
Sbjct: 180 YELFQQTKAAEPHKADIRYLSMGMTHDYRIAVEEGANLVRVGTAIFGARDY 230
>gi|46908267|ref|YP_014656.1| hypothetical protein LMOf2365_2063 [Listeria monocytogenes serotype
4b str. F2365]
gi|46881538|gb|AAT04833.1| conserved hypothetical protein TIGR00044 [Listeria monocytogenes
serotype 4b str. F2365]
Length = 229
Score = 244 bits (623), Expect = 9e-63, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQPEDVTLVAVTKTIDVAGITEFYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K + L + D+ +IGSLQ+ KV +++ D + ++ R A + K +
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDRSSLAKEIEKRATK---PV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-NPKPH--FYLL 177
++QVN E K G + F+ + + GLM + P + + H F+ L
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQE-ANFTFIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGI 214
++ +E T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVGRAL 221
>gi|71657511|ref|XP_817270.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70882450|gb|EAN95419.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 252
Score = 244 bits (623), Expect = 9e-63, Method: Composition-based stats.
Identities = 84/233 (36%), Positives = 116/233 (49%), Gaps = 23/233 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + ++E + RP V+LVA SK ++ CG F EN +QE
Sbjct: 14 EIAENYKNVLGRMEAA--SGGRP---VTLVAASKTKSPACVQALYDCGHRCFGENYVQEL 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD---VIETVSREKTASLLSLEMI--KQ 116
+K L K D+Q FIG LQSNKV E++ D +++TV EK A+ L+ + +
Sbjct: 69 VEKAGVLPK--DIQWHFIGHLQSNKVKELLEGVDGLYLVQTVDSEKLATKLNNGCVTYRG 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQ-KYQLNVEGLMCIPPAMGNPKPH- 173
R L VYIQVNT E KSG P T + ++ LNV G+M I +P
Sbjct: 127 GRSLNVYIQVNTSGEESKSGTEPGNPTVELAQYIQEHCKHLNVAGVMTIGMPDYTSRPEN 186
Query: 174 FYLLSE----IARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L + +AR L LSMGMT DFE AI G+T VR+G+ +FG+R
Sbjct: 187 FECLLQVREAVARALSLPADSLALSMGMTGDFENAIKMGSTVVRVGTALFGKR 239
>gi|307183253|gb|EFN70122.1| Proline synthetase co-transcribed bacterial-like protein protein
[Camponotus floridanus]
Length = 248
Score = 244 bits (623), Expect = 9e-63, Method: Composition-based stats.
Identities = 83/247 (33%), Positives = 120/247 (48%), Gaps = 28/247 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
+ L+ KI +A R + LVAVSK+ ++ I A GQ F EN
Sbjct: 3 DIAANLKSVCDKILYAATK--RTSEHQYYEPRLVAVSKLQSTESILSAYKAGQRHFGENY 60
Query: 58 LQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLE 112
+ E +K + L K ++Q FIG+LQ NKV++I V +IE+V EK A LL+
Sbjct: 61 VNELVEKALNPQILEKCKEIQWHFIGNLQRNKVNKILSVPNLYIIESVGNEKLADLLNNS 120
Query: 113 MIK----QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAM 167
K + L V +QVNT E +K+G + V + L GLM I
Sbjct: 121 WPKFRKSDNCKLNVMVQVNTSQEEEKNGCDIVEVSTLVKHIINNCHNLKFMGLMTIGMFG 180
Query: 168 GN----PKPHFYLL--------SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ P P+F L +E+A + K +LSMGM+ D+E AI G+T+VR+G+ IF
Sbjct: 181 YDITNGPNPYFTCLIKCREKISNELAIDIKNIELSMGMSNDYEHAIELGSTNVRVGTAIF 240
Query: 216 GERPCQT 222
G RP +
Sbjct: 241 GNRPQKN 247
>gi|169343770|ref|ZP_02864769.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens C
str. JGS1495]
gi|169298330|gb|EDS80420.1| conserved hypothetical protein TIGR00044 [Clostridium perfringens C
str. JGS1495]
Length = 219
Score = 243 bits (622), Expect = 9e-63, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 109/231 (47%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L F +KI +V L+AVSK +++ A G F ENK+QE
Sbjct: 1 MDIKENLTKFTEKI----------PSNVQLIAVSKTRTIEEMEEAYEFGIRKFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ +E V+ IG LQ+NKV IV +I+++ K + K ++
Sbjct: 51 IIRKFDEFHQE--VEWHLIGHLQTNKVKYIVDKVHLIQSLDSIKLLKEIEKVYGKHNKIA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLS 178
IQVN G E QK GI+ + + + +NV G+M I P + +F
Sbjct: 109 NTLIQVNIGREEQKYGILEEELDELIEAIEACNNVNVLGIMTIIPKGTEEECRKYFSKTH 168
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + K+ LSMGM+ D+E+AI G+ VRIG GIFG+R +
Sbjct: 169 KLFCELKEKKFKNIKMDILSMGMSGDYEIAIEEGSNMVRIGQGIFGKRLYK 219
>gi|303239841|ref|ZP_07326364.1| alanine racemase domain protein [Acetivibrio cellulolyticus CD2]
gi|302592551|gb|EFL62276.1| alanine racemase domain protein [Acetivibrio cellulolyticus CD2]
Length = 235
Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats.
Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + + K+E +AI + R + ++++ VSK V+ +KI A+ G EN++QE
Sbjct: 8 IKKNLDIIRGKVERAAIKSGRKLEDITIIGVSKTVEPEKIIRAIDEGITELGENRVQELT 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ + + IG LQ+NKV +V +I +V R A + K + + +
Sbjct: 68 EKYDIINR--SCNWHLIGHLQTNKVKYVVDKVKMIHSVDRYDLALEIHNRAKKIGKVVDI 125
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
+QVN E K G+ P+ + + + V G M + P NP+ F L +
Sbjct: 126 LVQVNISGEKSKFGVSPDGALELIKQIVTLENVRVRGFMTMAPFASNPEKVRNVFSGLRK 185
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ + + + LSMGM+ D+E+AI GA VRIG+ +FG+R
Sbjct: 186 LSIDIEKENINNIVIDYLSMGMSNDYEIAIEEGANLVRIGTALFGQRQY 234
>gi|312140137|ref|YP_004007473.1| alanine racemase [Rhodococcus equi 103S]
gi|311889476|emb|CBH48793.1| putative alanine racemase [Rhodococcus equi 103S]
Length = 242
Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats.
Identities = 61/232 (26%), Positives = 102/232 (43%), Gaps = 15/232 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L + ++E + A R V+L+ V+K + +RV G F E++ EA
Sbjct: 7 VASALTRVRARLEAACREAGREPSEVALLPVTKFFPASDVRVLYDLGCRAFGESREPEAS 66
Query: 63 KKWIPLRKEWD----VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL------SLE 112
K + D V+ IG LQ NKV +V D + ++ + L +L+
Sbjct: 67 TKVAEFSADPDVTEPVRWHMIGRLQRNKVKSVVRWADTVHSLDSGRLTDALSGAVAAALD 126
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
++SR + V +QV+ + + G+ + L + GLM +PP +P
Sbjct: 127 AGERSRAVEVLVQVSLDGDPSRGGVPVADLESLADRVASAPGLELAGLMAVPPLGADPDA 186
Query: 173 HFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L E+ + LS GMT D E A+ G+T VR+G+ + G RP
Sbjct: 187 AFAQLHEVHADLMRVHPGAGTLSAGMTGDLESAVRHGSTCVRVGTALLGSRP 238
>gi|156405523|ref|XP_001640781.1| predicted protein [Nematostella vectensis]
gi|156227917|gb|EDO48718.1| predicted protein [Nematostella vectensis]
Length = 297
Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats.
Identities = 83/249 (33%), Positives = 113/249 (45%), Gaps = 30/249 (12%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
++G L+ QKI A RP++ LVAVSK + I A + GQ F EN
Sbjct: 5 NIGLALKTVLQKINEVAEK--RPENLQKLVPRLVAVSKTKPIECIIEAYNNGQRHFGENY 62
Query: 58 LQEAKKKWIP--LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEM 113
+QE K LR ++ FIG LQ NK + + V ++ETV EK A+ L+
Sbjct: 63 VQELVGKSNDPRLRNLVGLRWHFIGHLQRNKCNNLVGVPNLYMVETVDSEKLAATLNNSW 122
Query: 114 IK--QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN- 169
K L V ++VNT E K G +P + + L + GLM I +
Sbjct: 123 GKFPNREPLKVMVEVNTSEEKSKKGCLPAEATQLTEFVFNECPHLRLSGLMTIGQYNYDW 182
Query: 170 ----PKPHFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
P P F L E KL +LSMGM+ D+E AI G+T+VR+GS IFG
Sbjct: 183 EKHGPNPDFLRLIRCREEICGKLNLPLERFELSMGMSSDYEKAITMGSTNVRVGSTIFGV 242
Query: 218 R----PCQT 222
R P +
Sbjct: 243 REPKLPAKA 251
>gi|226360225|ref|YP_002778003.1| hypothetical protein ROP_08110 [Rhodococcus opacus B4]
gi|226238710|dbj|BAH49058.1| hypothetical protein [Rhodococcus opacus B4]
Length = 257
Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats.
Identities = 62/232 (26%), Positives = 97/232 (41%), Gaps = 14/232 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + +++ + + A R VSL+ V+K R+ G F E++ QEA
Sbjct: 22 DIEAALGAVRARLDAACLQAGRDPAEVSLLPVTKFFPESDARILYDLGCREFGESREQEA 81
Query: 62 KKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA------SLLSLE 112
K R + V+ IG LQ NK + I +V E+ + +LE
Sbjct: 82 TAKIAEFRTAVTDPSVRWHMIGHLQRNKAKAVAHWAYAIHSVDSERLVGALGRAAAAALE 141
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
++ L V +QV+ + Q+ G + L GLM +PP +P
Sbjct: 142 AGERPAPLRVLLQVSLDGDPQRGGAAIADLDRLAAQVQSSPGLEYRGLMAVPPIDADPDA 201
Query: 173 HFYLLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L +I T+LS GMT D E A+ G+T VR+G+ + G RP
Sbjct: 202 AFEELHKIHARLRRDHPDATELSAGMTNDLEHAVRHGSTCVRVGTALLGARP 253
>gi|223995373|ref|XP_002287370.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976486|gb|EED94813.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 262
Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats.
Identities = 89/245 (36%), Positives = 117/245 (47%), Gaps = 27/245 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+++ + KQ++E + R SV LVAVSK + + A GQ F EN QE
Sbjct: 19 LNISANIASVKQRMEYAIAANDREAGSVRLVAVSKTKPLELLVAAYETGQRYFGENYAQE 78
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV-----SLFDVIETVSREKTASLLSLEMI- 114
K + DV FIG LQSNK + +V + IETVS K AS L+
Sbjct: 79 LMTKSTEMPD--DVAWHFIGPLQSNKAAPLVKTVGLNKLACIETVSTIKLASKLNRAAET 136
Query: 115 -------KQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILC-RQKYQLNVEGLMCIPP 165
+ + L +YIQVNT E KSG+ P + D V + L+++GLM I
Sbjct: 137 WNEESGSDEKKKLGIYIQVNTSGEDSKSGVTPGAEVIDLVKQITEECSTLSIDGLMTIGA 196
Query: 166 AMGNPKPHFYLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
F L++ E K KLSMGM+ DFE+AIA GATSVR+GS IFGE
Sbjct: 197 PGDYT--CFDSLAKCREEVAGVLDKDPKELKLSMGMSGDFEVAIAKGATSVRVGSTIFGE 254
Query: 218 RPCQT 222
R
Sbjct: 255 RDYSN 259
>gi|325674381|ref|ZP_08154069.1| alanine racemase domain protein [Rhodococcus equi ATCC 33707]
gi|325554641|gb|EGD24315.1| alanine racemase domain protein [Rhodococcus equi ATCC 33707]
Length = 242
Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats.
Identities = 60/232 (25%), Positives = 102/232 (43%), Gaps = 15/232 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L + +++ + A R V+L+ V+K + +RV G F E++ EA
Sbjct: 7 VASALTRVRARLDAACRDAGREPSEVALLPVTKFFPASDVRVLYDLGCRAFGESREPEAS 66
Query: 63 KKWIPLRKEWD----VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL------SLE 112
K + D V+ IG LQ NKV +V D + ++ + L +L+
Sbjct: 67 TKVAEFSADPDVTEPVRWHMIGRLQRNKVKSVVRWADTVHSLDSGRLTDALSGAVAAALD 126
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
++SR + V +QV+ + + G+ + L + GLM +PP +P
Sbjct: 127 AGERSRAVEVLVQVSLDGDPSRGGVPVADLESLADRVASAPGLELAGLMAVPPLGADPDA 186
Query: 173 HFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L E+ + LS GMT D E A+ G+T VR+G+ + G RP
Sbjct: 187 AFAQLHEVHADLMRVHPGAGTLSAGMTGDLESAVRHGSTCVRVGTALLGSRP 238
>gi|315497178|ref|YP_004085982.1| alanine racemase domain protein [Asticcacaulis excentricus CB 48]
gi|315415190|gb|ADU11831.1| alanine racemase domain protein [Asticcacaulis excentricus CB 48]
Length = 221
Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats.
Identities = 89/216 (41%), Positives = 123/216 (56%), Gaps = 2/216 (0%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ + + L R S L AVSK + IR L G F EN++QEA +
Sbjct: 7 AENYARIVKGLHKTLKLTGRADGSACLTAVSKNQPWEVIRPVLEAGHRRFGENRVQEAME 66
Query: 64 KWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+W P++ + D+ L IG LQSNK ++ V+ FDV+E+V REK A ++ E KQ R V
Sbjct: 67 RWGPVKDQYPDLTLCLIGPLQSNKAADAVAFFDVVESVDREKIARAIADEAQKQGRAPRV 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
Y+QVN G E QK+GI+P +T F+ R Y L GLMCIPP G P+F LL ++A
Sbjct: 127 YVQVNIGEEPQKAGILPAETDRFIATVRG-YGLEPCGLMCIPPVEGPRGPYFALLRKMAE 185
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ DFE A+ G+ +R+G+ IFG R
Sbjct: 186 RNGIGHLSMGMSDDFETALRFGSNEIRVGTAIFGSR 221
>gi|319778671|ref|YP_004129584.1| Hypothetical protein YggS [Taylorella equigenitalis MCE9]
gi|317108695|gb|ADU91441.1| Hypothetical protein YggS [Taylorella equigenitalis MCE9]
Length = 233
Score = 243 bits (622), Expect = 1e-62, Method: Composition-based stats.
Identities = 72/228 (31%), Positives = 118/228 (51%), Gaps = 11/228 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + +Q++ + A R SV+++ V+K IR+A+ G FAENK QE
Sbjct: 3 TLAENFRALEQRVNEACKQAGREPGSVNILPVTKTFSPDTIRMAIDLGYHRFAENKAQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+K I L+ +Q IG LQ+NK E+ + I+++ R + A L + + +
Sbjct: 63 KEKAIELQDYDQLQWVIIGYLQTNKSKEVATYASEIQSLDRIELAKALDNRLQAAGKSIK 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVEGLMCIPPAM---GNPKPHFYL 176
+QV T E+ K+G+ ++ F+ ++ L+++G M I + + F
Sbjct: 123 ALVQVKTSPEVSKTGLEISEVPAFLNDLKESGIQTLDLQGFMTIAENTENQDDIRKCFSS 182
Query: 177 LSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L E+A C+ L +LSMGM+ DFE+AI GAT +RIG +FGER
Sbjct: 183 LRELAERCRDITGLALPQLSMGMSGDFEIAIQEGATEIRIGHALFGER 230
>gi|238787371|ref|ZP_04631170.1| alanine racemase [Yersinia frederiksenii ATCC 33641]
gi|238724633|gb|EEQ16274.1| alanine racemase [Yersinia frederiksenii ATCC 33641]
Length = 203
Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats.
Identities = 69/201 (34%), Positives = 92/201 (45%), Gaps = 11/201 (5%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD---VQLRFIGSLQSN 85
+L+AVSK I A++ GQ F EN +QE K ++ FIG LQSN
Sbjct: 2 TLLAVSKTKPVTAIEEAIAAGQFAFGENYVQEGVDKIHYFADTPHATKLEWHFIGPLQSN 61
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
K + F TV R K A LS + L V IQVN E KSGI +
Sbjct: 62 KSRLVAENFAWCHTVDRLKIAQRLSAQRPNNMPALNVLIQVNICDEQSKSGIALAELPAL 121
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR--------ECKLTKLSMGMTRDF 197
Q L++ GLM IP + + + ++ + ++ LSMGMT D
Sbjct: 122 AASISQLPHLHLRGLMAIPAPETDYQRQLAVFEQMNQAFLTLKACYPQMDTLSMGMTDDM 181
Query: 198 ELAIASGATSVRIGSGIFGER 218
AIA+G+T VRIG+ IFG R
Sbjct: 182 AAAIAAGSTLVRIGTAIFGSR 202
>gi|260574451|ref|ZP_05842455.1| alanine racemase domain protein [Rhodobacter sp. SW2]
gi|259023347|gb|EEW26639.1| alanine racemase domain protein [Rhodobacter sp. SW2]
Length = 215
Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats.
Identities = 85/192 (44%), Positives = 111/192 (57%), Gaps = 2/192 (1%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIGSLQSNK 86
V L+AVSK+ ++ L G +F EN +QEA+ KW LR + VQ+ IG LQ+NK
Sbjct: 24 VQLIAVSKVQPLTRVVAVLEQGHRLFGENYVQEAQGKWPDLRARFGAVQVHMIGPLQTNK 83
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
V LFD I T+ R A L+ + +++QVNTG E QK+G++P F+
Sbjct: 84 AKVAVDLFDAIHTLDRPSLAEKLARLAQDRGTCPQLFVQVNTGAEPQKTGVLPADADAFI 143
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT 206
CR L + GLMCIPP + PHF L+ IA L LSMGM+ DFE AIA+GAT
Sbjct: 144 ATCRAMD-LPLAGLMCIPPEGTDSTPHFTELAAIAARNGLAGLSMGMSSDFEAAIAAGAT 202
Query: 207 SVRIGSGIFGER 218
VR+GS IFG R
Sbjct: 203 HVRVGSAIFGAR 214
>gi|113952848|ref|YP_729817.1| hypothetical protein sync_0599 [Synechococcus sp. CC9311]
gi|113880199|gb|ABI45157.1| conserved hypothetical protein TIGR00044 [Synechococcus sp. CC9311]
Length = 224
Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats.
Identities = 68/221 (30%), Positives = 111/221 (50%), Gaps = 13/221 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++ Q + DSV+L+AVSK + +R + GQV F E+++QEA
Sbjct: 10 TIQSRWQAIHAE----C------PDSVNLLAVSKGHPAMAVRELAALGQVDFGESRVQEA 59
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L ++ FIG LQ+NKV +V F VI ++ + A S ++++R
Sbjct: 60 LPKQQDLEDLSSLRWHFIGRLQANKVRAVVRAFPVIHSIDSQGLAERTSRIAVEENRIPE 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLS 178
V+ QV + K G P+ ++ + L GLM + P + + F+
Sbjct: 120 VFFQVKLREDPAKGGWEPDALREVWPQLQSLPGLKPIGLMTMAPLGLGLEDRQSLFHDCR 179
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+A E L++ SMGM+ D++ A +GAT VR+GSG+FG RP
Sbjct: 180 TLADELALSECSMGMSGDWKQAAKAGATWVRVGSGLFGPRP 220
>gi|163846505|ref|YP_001634549.1| alanine racemase domain-containing protein [Chloroflexus
aurantiacus J-10-fl]
gi|222524290|ref|YP_002568761.1| alanine racemase domain-containing protein [Chloroflexus sp.
Y-400-fl]
gi|163667794|gb|ABY34160.1| alanine racemase domain protein [Chloroflexus aurantiacus J-10-fl]
gi|222448169|gb|ACM52435.1| alanine racemase domain protein [Chloroflexus sp. Y-400-fl]
Length = 246
Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats.
Identities = 79/238 (33%), Positives = 113/238 (47%), Gaps = 21/238 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L +L + +++I +A A R D V L+AVSK + + A++ G EN++QEA
Sbjct: 4 ALRQRLAIVREQIAAAAAAAGRQADEVQLIAVSKTHPPEVVAAAVAAGVSDIGENRVQEA 63
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K L + + IG LQ NK V LFD+I +V + A L ++ R L
Sbjct: 64 QHKIAALHSLQPRPRWHLIGHLQRNKAKVAVELFDLIHSVDSVRLAETLDRHARERDRRL 123
Query: 121 PVYIQVNTGYEIQKSGI----------MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
P+ +QVN E K G + V Q L + GLM I P + +P
Sbjct: 124 PILLQVNVSGEASKEGFVVVDGIKNTTAYSAFLRDVEAILQLPALEIRGLMTIAPIVEHP 183
Query: 171 ---KPHFYLLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+P+F L E+ + +LSMGM+ D AIA GAT VRIG IFGER
Sbjct: 184 DLARPYFATLRELRDDLVRRYPQTNWRELSMGMSDDLTAAIAEGATMVRIGRAIFGER 241
>gi|269792874|ref|YP_003317778.1| alanine racemase domain-containing protein [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100509|gb|ACZ19496.1| alanine racemase domain protein [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 235
Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats.
Identities = 68/227 (29%), Positives = 112/227 (49%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L + IE +A R V +VAV+K + +R A G I EN++QEA
Sbjct: 7 VRDNLAAAMEAIERAAGSVGRDPGEVRVVAVTKNHPPQAVRAAAQAGIRIVGENRVQEAM 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-SRFLP 121
+K L+ DVQ IG LQ NKV + + F + TV + AS L+ +++ P
Sbjct: 67 EKRRELQD-LDVQWIMIGHLQRNKVRKALETFHQVHTVDSLELASSLNRVLMETPDARCP 125
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V ++VN E K G+ P+ + + + +L + GL + P + + + F L
Sbjct: 126 VLMEVNISGEASKHGVSPDLAQPLGEMILSRCERLELRGLFGVGPLVDDQARIRASFASL 185
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + L +LSMGM+ D+ LA+ G+T VR+G+ +FG R
Sbjct: 186 RRLRDQLEAALGIHLPELSMGMSSDYPLAVMEGSTMVRLGTCLFGPR 232
>gi|212551104|ref|YP_002309421.1| hypothetical protein CFPG_747 [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212549342|dbj|BAG84010.1| conserved hypothetical protein [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 234
Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats.
Identities = 68/232 (29%), Positives = 117/232 (50%), Gaps = 26/232 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++L ++ + K+ V LVAVSK +S+ I + GQ +F ENK++E
Sbjct: 1 MNVIDRLNYIRKHL----------KEGVRLVAVSKFQNSESILEVYNAGQRLFGENKVKE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D++ FIG LQ+NK++ +V D I ++ + + + +K +R +
Sbjct: 51 LYHKYQQLPK--DIEWHFIGHLQTNKLNYVVPFVDTIHSIDSFRLLNKTNYCALKYNRRI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNPK---PHFY 175
V +Q++ E+ K G + ++ + L + +++ GLM + N F
Sbjct: 109 KVLLQMHIAKEVNKFGFSFGEVENLLSDKLWKTFKNVDIIGLMGMASFTENQDQITKEFS 168
Query: 176 LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LS + K +LSMGM+ D+ LAI G+T VRIGS IFG++
Sbjct: 169 SLSNFFLKLKNQYFFDKKNFKELSMGMSGDYLLAIKQGSTMVRIGSSIFGKK 220
>gi|91216469|ref|ZP_01253435.1| hypothetical protein P700755_02917 [Psychroflexus torquis ATCC
700755]
gi|91185263|gb|EAS71640.1| hypothetical protein P700755_02917 [Psychroflexus torquis ATCC
700755]
Length = 218
Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats.
Identities = 61/203 (30%), Positives = 99/203 (48%), Gaps = 12/203 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+++ LVAVSK ++ + A GQ IF ENK+QE KW L K D++ +G +Q+N
Sbjct: 18 ENIDLVAVSKTKPNEDLLEAYKAGQRIFGENKVQEMTDKWDALPK--DIKWHMVGHVQTN 75
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV + D+I V K ++ ++ R + +QV E K G+ P K F
Sbjct: 76 KVKYMAPYVDLIHAVQNMKLLKEINKRAVENDRVIDCLLQVKIAEEESKYGMSPEDLKLF 135
Query: 146 V--ILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIAREC-----KLTKLSMGMTR 195
+ + + ++GLM + + + F +L + +E + LSMGM+
Sbjct: 136 LKDDKLAELKNVRLKGLMAMATFTEDEEQIHREFKILETLYKETSQTQKDFSILSMGMSG 195
Query: 196 DFELAIASGATSVRIGSGIFGER 218
D+++A+ VRIGS IFG R
Sbjct: 196 DYKIAMQHDTNMVRIGSSIFGAR 218
>gi|282897740|ref|ZP_06305739.1| Protein of unknown function UPF0001 [Raphidiopsis brookii D9]
gi|281197419|gb|EFA72316.1| Protein of unknown function UPF0001 [Raphidiopsis brookii D9]
Length = 224
Score = 243 bits (621), Expect = 1e-62, Method: Composition-based stats.
Identities = 72/229 (31%), Positives = 110/229 (48%), Gaps = 21/229 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ + + ++ SV L+AVSK V ++ +R A G F E+++QEA
Sbjct: 4 SIAERVTIIRAQL----------PPSVRLIAVSKQVSTQLMREAYRAGIRDFGESRIQEA 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K I L+ D+ FIG LQSNK + V LF I +V A L L
Sbjct: 54 ASKQIELQDLPDITWHFIGHLQSNKAKKAVELFSWIHSVDNLHIAERLHTIAQTTGASLC 113
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS--- 178
+QV + QKSG Q + Q L ++GLM IPP + ++ +
Sbjct: 114 SCLQVKILPDPQKSGWTVPQLLTDLPFLSQYQNLQIQGLMTIPPWGLKEEKILHVFNHTY 173
Query: 179 EIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+A+E + +LSMGM+ D+ LA+ +GAT VR+G+ +FG RP
Sbjct: 174 NLAQEIACQKWANIGMRELSMGMSGDYNLAVKAGATMVRLGTILFGNRP 222
>gi|328767687|gb|EGF77736.1| hypothetical protein BATDEDRAFT_91499 [Batrachochytrium
dendrobatidis JAM81]
Length = 241
Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 75/231 (32%), Positives = 112/231 (48%), Gaps = 18/231 (7%)
Query: 3 LGNKLQVFKQKIENS-AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + + +I++ + + + LVAVSK + I A G F EN +QE
Sbjct: 14 IADNIADITNRIQSIPCKHS--WQKQIRLVAVSKTKPASDIAAAYELGHRHFGEN-VQEL 70
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K L D+ FIGS+QSNK + V IET+ K A ++ K +
Sbjct: 71 VEKASILPS--DIHWHFIGSIQSNKCKALADVPNLWTIETIDSSKKALTMNKACQKLASP 128
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPP---AMGNPKPHFY 175
L V++Q+NT E KSGI+P+ + +L + GLMCI A + P F
Sbjct: 129 LRVFLQINTSGEATKSGILPSNCVMTAKEILDECDKLELIGLMCIGAPHNAKNDRNPDFD 188
Query: 176 LLSEIARECKLT------KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LL E ++ + +LSMGM+ DFE AI G+T++R+GS IFG R
Sbjct: 189 LLVECKQQIEAAFGMSGLELSMGMSDDFESAIEYGSTNIRVGSSIFGSRSY 239
>gi|254827081|ref|ZP_05231768.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|258599464|gb|EEW12789.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
Length = 229
Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE++ + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIEHACEESNRQSEDVTLVAVTKTIDVTGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + L + D+ +IGSLQ+ KV +++ D + ++ R A + K +
Sbjct: 61 FLEKTVELADKDDICWHYIGSLQTRKVKDVLPQIDYLHSLDRSSLAKEIEKRATK---PV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-NPKPH--FYLL 177
++QVN E K G + F+ + + GLM + P + + H F+ L
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQE-ANFTFIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGI 214
++ +E T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDYGIAITEGATFIRVGRAL 221
>gi|224501168|ref|ZP_03669475.1| hypothetical protein LmonFR_01385 [Listeria monocytogenes FSL
R2-561]
gi|284802478|ref|YP_003414343.1| hypothetical protein LM5578_2234 [Listeria monocytogenes 08-5578]
gi|284995620|ref|YP_003417388.1| hypothetical protein LM5923_2185 [Listeria monocytogenes 08-5923]
gi|284058040|gb|ADB68981.1| hypothetical protein LM5578_2234 [Listeria monocytogenes 08-5578]
gi|284061087|gb|ADB72026.1| hypothetical protein LM5923_2185 [Listeria monocytogenes 08-5923]
Length = 229
Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE++ + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIEHACEESNRQSEDVTLVAVTKTIDVTGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + L + D+ +IGSLQ+ KV +++ D + ++ R A + K +
Sbjct: 61 FLEKTVELADKDDICWHYIGSLQTRKVKDVLPQIDYLHSLDRSSLAKEIEKRATK---PV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-NPKPH--FYLL 177
++QVN E K G + F+ + + GLM + P + + H F+ L
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQE-ANFTFIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGI 214
++ +E T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDYGIAITEGATFIRVGRAL 221
>gi|16804070|ref|NP_465555.1| hypothetical protein lmo2031 [Listeria monocytogenes EGD-e]
gi|16411501|emb|CAD00109.1| lmo2031 [Listeria monocytogenes EGD-e]
Length = 229
Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats.
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE++ + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIEHACEESNRQSEDVTLVAVTKTIDVTGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + L + D+ +IGSLQ+ KV +++ D + ++ R A + K +
Sbjct: 61 FLEKTVELADKDDICWHYIGSLQTRKVKDVLPQIDYLHSLDRSSLAKEIEKRATK---PV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-NPKPH--FYLL 177
++QVN E K G + F+ + + GLM + P + + H F+ L
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQE-ANFTFIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGI 214
++ +E T+LSMGMT D+ +AI GAT +RIG +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDYGIAITEGATFIRIGRAL 221
>gi|327314522|ref|YP_004329959.1| pyridoxal phosphate enzyme, YggS family [Prevotella denticola
F0289]
gi|326944751|gb|AEA20636.1| pyridoxal phosphate enzyme, YggS family [Prevotella denticola
F0289]
Length = 223
Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats.
Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 26/231 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L+ D V LVA+SK + I A GQ +F E++ QE
Sbjct: 3 DVAKNLRKVL----------GSLPDGVRLVAISKFHPVEYIEAAYHEGQRVFGESQEQEL 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L K D++ FIG LQ+NKV I +IE V K ++ + + R +
Sbjct: 53 ARKVESLPK--DIEWHFIGHLQTNKVKYIAPYISMIEAVDSLKLLKEINKQAARYGRVIN 110
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGN---------- 169
V ++++ E K G P ++ + ++ +++ GLM + + +
Sbjct: 111 VLLELHIAEEESKYGFTPAACRELLENGEWKELRNVHISGLMMMASNVDDRSQIRGEMTL 170
Query: 170 PKPHFYLLSE--IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L A + + S GM+ D+++A+ +T VR+G+ IFG R
Sbjct: 171 AADLFDELKARFFADDPAFKERSWGMSHDYDIAVECRSTMVRVGTAIFGPR 221
>gi|16801203|ref|NP_471471.1| hypothetical protein lin2137 [Listeria innocua Clip11262]
gi|16414651|emb|CAC97367.1| lin2137 [Listeria innocua Clip11262]
Length = 229
Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats.
Identities = 61/225 (27%), Positives = 101/225 (44%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ L+ +I+ S + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLEKVTAQIKQSCEKSNRQQADVTLVAVTKTIDVAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + D+ +IGSLQ+ KV +++ D + ++ R A + K +
Sbjct: 61 FLDKTRELAGKDDICWHYIGSLQTRKVKDVLPEIDYLHSLDRSSLAKEIEKRATK---PI 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G + F+ + + GLM + P + K F+ L
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQE-ADFNFIEIIGLMTMAPITNSDKELHHVFHEL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGI 214
++ +E T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNVPCTELSMGMTNDYGIAITEGATFIRVGRAL 221
>gi|18310836|ref|NP_562770.1| hypothetical protein CPE1854 [Clostridium perfringens str. 13]
gi|18145518|dbj|BAB81560.1| conserved hypothetical protein [Clostridium perfringens str. 13]
Length = 219
Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats.
Identities = 70/231 (30%), Positives = 108/231 (46%), Gaps = 22/231 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L F +KI +V L+AVSK +++ A G F ENK+QE
Sbjct: 1 MDIKENLTKFTEKI----------PSNVQLIAVSKTRTIEEMEEAYEFGIRKFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + DV+ IG LQ+NKV IV +I+++ K + K ++
Sbjct: 51 IIRKFDEFHQ--DVEWHLIGHLQTNKVKYIVDKVHLIQSLDSIKLLKEIEKVYGKHNKIA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLS 178
IQVN G E QK GI+ + + + +NV G+M I P + +F
Sbjct: 109 NTLIQVNIGREEQKYGILEEELDELIEAIEACNNVNVLGIMTIIPKGTEEECRKYFSKTH 168
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + K+ LSMGM+ D+E+A G+ VRIG GIFG+R +
Sbjct: 169 KLFCELKEKKFKNIKMDILSMGMSGDYEIATEEGSNMVRIGQGIFGKRLYK 219
>gi|254421874|ref|ZP_05035592.1| conserved hypothetical protein TIGR00044 [Synechococcus sp. PCC
7335]
gi|196189363|gb|EDX84327.1| conserved hypothetical protein TIGR00044 [Synechococcus sp. PCC
7335]
Length = 230
Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats.
Identities = 73/227 (32%), Positives = 108/227 (47%), Gaps = 21/227 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L +Q++ SV ++ V+K S +R A G FAENK+QE
Sbjct: 14 LSARLAHIRQQV----------PPSVRIIGVTKTFSSDIVRQAYDAGFREFAENKVQEGI 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L D+ FIG +QSNK ++V FD I +V K A+ L+ + +
Sbjct: 64 AKQAKLSDLTDITWHFIGHIQSNKALKVVENFDWIHSVDSLKLAARLNRQAKSLGKRPSC 123
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYLLSE 179
+QV + K+G + Q L++ GLM IPP + F +
Sbjct: 124 CLQVKLAPDPAKTGFEIETLLSGLADLDQLSALDIRGLMVIPPYGLTNVQVRAIFEKGAA 183
Query: 180 IARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A+E K+ +LSMGM+ DFE AIA+GAT +RIG G+FG+R
Sbjct: 184 LAQEIAGRSLVNIKMDQLSMGMSGDFEQAIAAGATMIRIGRGLFGQR 230
>gi|113478239|ref|YP_724300.1| hypothetical protein Tery_4903 [Trichodesmium erythraeum IMS101]
gi|110169287|gb|ABG53827.1| Protein of unknown function UPF0001 [Trichodesmium erythraeum
IMS101]
Length = 226
Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats.
Identities = 72/228 (31%), Positives = 104/228 (45%), Gaps = 21/228 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ K + SV L+AV+K V IR A + G F ENK+QEA
Sbjct: 4 SIAERITNIKSNL----------PKSVRLIAVTKQVSVDTIRTAYAAGIRDFGENKVQEA 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L+ D+ IG LQSNKV + + F I +V K A L+ +
Sbjct: 54 EAKQAQLQDLPDITWHLIGHLQSNKVVKALKQFQWIHSVDNLKLAKRLNALAEQFCYSPN 113
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
+ +QV + K G + + Q L ++GLM IPP + F
Sbjct: 114 ICLQVKILPDPNKYGWTITELMSDLEELNQCQHLKIKGLMTIPPQGLDDLQTLSVFQKTK 173
Query: 179 EIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A E K +LSMGM+ D+ LAI++G T VR+G +FGER
Sbjct: 174 ELALEIREKNFSHLKTQELSMGMSEDYNLAISAGTTIVRLGRILFGER 221
>gi|167752132|ref|ZP_02424259.1| hypothetical protein ALIPUT_00374 [Alistipes putredinis DSM 17216]
gi|167660373|gb|EDS04503.1| hypothetical protein ALIPUT_00374 [Alistipes putredinis DSM 17216]
Length = 221
Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats.
Identities = 67/232 (28%), Positives = 107/232 (46%), Gaps = 23/232 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +++ K + V LVAVSK +++I A GQ IF EN+ QE
Sbjct: 1 MSIADRILRVKSSL----------PGQVELVAVSKTYPAQRIMEAYEAGQRIFGENRPQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L K D++ IG LQ+NKV +V +I ++ + A + R +
Sbjct: 51 MAQKYEELPK--DIEWHLIGHLQTNKVKMVVPFVAMIHSLDSVRLAEAIQKAAAAAGRTI 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
V ++++ E KSG + +++V + L V G+M + G+ + F
Sbjct: 109 DVLLEIHVADEESKSGWEWAELQEYVRSGAFARLPNLRVRGVMGVATNTGDEQVIRRDFA 168
Query: 176 LLSEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L E + LS+GM+ D+ +A+ GAT VRIGS IFG R
Sbjct: 169 ALQRYKSELSPYFGPEFDTLSIGMSHDYRIALEYGATLVRIGSLIFGARDYS 220
>gi|217077921|ref|YP_002335639.1| hypothetical protein THA_1872 [Thermosipho africanus TCF52B]
gi|217037776|gb|ACJ76298.1| conserved hypothetical protein [Thermosipho africanus TCF52B]
Length = 227
Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats.
Identities = 71/227 (31%), Positives = 108/227 (47%), Gaps = 10/227 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS + + I+N R + LVAVSK + ++ A G IF EN Q
Sbjct: 1 MSEIYKRYMEVVDSIKNKCKQIDRDYSKIKLVAVSKTFPVEVLKEAYDSGINIFGENYAQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E + K L K+++++ FIG +Q NK+ IV + +I +VSR + ++ K +
Sbjct: 61 ELRDKSKVL-KDYNIEWHFIGRIQINKLKYIVPVASLIHSVSRIEEIEVIDKISKKLGKI 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ IQVN E KSG+ P Q D + + + V GLM + P N + F
Sbjct: 120 QEILIQVNVSGEETKSGVKPEQLIDLIEKSKLYENVKVIGLMTMAPFTDNEEIIRNVFKK 179
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + +LSMGM+ D+ +A+ GAT +RIGS IFG R
Sbjct: 180 ARVLRDNVSKEFPDVVELSMGMSNDYLIALEEGATILRIGSKIFGSR 226
>gi|196015285|ref|XP_002117500.1| hypothetical protein TRIADDRAFT_61518 [Trichoplax adhaerens]
gi|190580029|gb|EDV20116.1| hypothetical protein TRIADDRAFT_61518 [Trichoplax adhaerens]
Length = 254
Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats.
Identities = 83/234 (35%), Positives = 113/234 (48%), Gaps = 22/234 (9%)
Query: 8 QVFKQKIENSAIL--AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+ Q+IE + + A+ P LVAVSK I A GQ F EN +QE ++K
Sbjct: 21 ENILQRIEAAKLRRSAELPNIEPRLVAVSKTKPVNLIIDAFESGQTHFGENYVQELERKA 80
Query: 66 --IPLRK--EWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMIKQSR- 118
L K + ++ FIG LQSNK ++ D +ETV +K A L+ +
Sbjct: 81 NDEELLKATKGQIKWHFIGHLQSNKCKKLAAIPNLDTVETVDSKKLADCLNKAWESAGKL 140
Query: 119 -FLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPP---AMGNPKPH 173
L + +QVNT E KSG P+ V ++ +LN GLM I + P
Sbjct: 141 EQLNIMVQVNTSQEENKSGCPPDDCVTIVDHVLKRCKKLNFVGLMTIGQLGRHDADSNPD 200
Query: 174 FYLLSEIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F LLSE + +LSMGM++DFE AI G+TSVR+GS IFG RP
Sbjct: 201 FRLLSECRKTVSDKMGIPIDALELSMGMSQDFEHAIEMGSTSVRVGSAIFGSRP 254
>gi|167648989|ref|YP_001686652.1| alanine racemase domain-containing protein [Caulobacter sp. K31]
gi|167351419|gb|ABZ74154.1| alanine racemase domain protein [Caulobacter sp. K31]
Length = 214
Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats.
Identities = 102/193 (52%), Positives = 132/193 (68%), Gaps = 3/193 (1%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
D+V+LVAVSK+ I L GQ +F EN++QEA +W R E ++LR IG LQSN
Sbjct: 24 DAVTLVAVSKLQPWDHIAPILDAGQRVFGENRVQEAMGRWSERRAE--IELRLIGPLQSN 81
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
K E V+ FDVIE++ REK A +L+ E+ + + +++QVNTG E QK+G+ PNQ F
Sbjct: 82 KAREAVAFFDVIESLDREKLARVLAGEIQARGKAPGLFVQVNTGEEPQKAGVTPNQADAF 141
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA 205
+ LCR L VEGLMCIPPA +P PHF LL++IA L+KLSMGM+ DFE AIA GA
Sbjct: 142 IALCRGLD-LPVEGLMCIPPAELDPAPHFRLLADIAARNGLSKLSMGMSDDFETAIACGA 200
Query: 206 TSVRIGSGIFGER 218
TSVR+GS +FG R
Sbjct: 201 TSVRVGSALFGRR 213
>gi|325279347|ref|YP_004251889.1| hypothetical protein Odosp_0626 [Odoribacter splanchnicus DSM
20712]
gi|324311156|gb|ADY31709.1| protein of unknown function UPF0001 [Odoribacter splanchnicus DSM
20712]
Length = 227
Score = 243 bits (620), Expect = 2e-62, Method: Composition-based stats.
Identities = 60/236 (25%), Positives = 98/236 (41%), Gaps = 26/236 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+++ ++ K + V L+AVSK + I A + GQ F EN+ QE
Sbjct: 3 LNIKENIEEI----------VKTLPEGVRLIAVSKTKPVEYIEEAYAGGQRAFGENRPQE 52
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D++ IG LQ V I S +I +V K + E +K R +
Sbjct: 53 MAAKYRQLPK--DIEWHMIGQLQEKNVKYIASFVKLIHSVDSLKLLQKIDREALKNERMI 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGN---PKPHFY 175
++ + E KSG+ + + + + + G+M I + + F
Sbjct: 111 DCLLEFHIAEEETKSGLNWEEACRLLESDEFKVLEHIRIVGVMGIATYTEDREQIRKEFR 170
Query: 176 LLSEIA---------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L I E +LSMGM+ D+ +A+ G+T VR+GS +FG R
Sbjct: 171 ELHRIFGLLKATYFQEEESFKELSMGMSGDYPIAVEEGSTMVRVGSAVFGARDYNN 226
>gi|162456467|ref|YP_001618834.1| hypothetical protein sce8184 [Sorangium cellulosum 'So ce 56']
gi|161167049|emb|CAN98354.1| conserved hypothetical protein UPF0001 [Sorangium cellulosum 'So ce
56']
Length = 247
Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats.
Identities = 71/201 (35%), Positives = 96/201 (47%), Gaps = 7/201 (3%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ V L+AVSK ++ IR A + GQ F EN QE +K L + IG LQ
Sbjct: 46 PEEVRLIAVSKGKPAEAIRAAYAAGQRDFGENYAQELVEKAEALADLDGLVWHAIGQLQR 105
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK + + V+++V RE+ A L +R L V I+VN G E K G
Sbjct: 106 NKAKLVARVAHVVQSVDREELAVELDRRAAALNRTLDVLIEVNVGGEASKGGCASGDFAP 165
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEIARECK----LTKLSMGMTRDF 197
+ + L GLM I P + +P P F L + L +LSMGM+ DF
Sbjct: 166 LLAAIARCAHLRPIGLMTIAPFLEDPNDVAPFFAQLRALRDAHGGRAVLPELSMGMSHDF 225
Query: 198 ELAIASGATSVRIGSGIFGER 218
E AIA GAT +R+G+ IFG R
Sbjct: 226 EAAIAEGATWIRVGTAIFGAR 246
>gi|241888743|ref|ZP_04776050.1| pyridoxal phosphate enzyme, YggS family [Gemella haemolysans ATCC
10379]
gi|241864766|gb|EER69141.1| pyridoxal phosphate enzyme, YggS family [Gemella haemolysans ATCC
10379]
Length = 225
Score = 242 bits (619), Expect = 2e-62, Method: Composition-based stats.
Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 23/230 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ- 59
M++ + ++I + A R D V L+AV+K V ++ AL G FAEN+ Q
Sbjct: 1 MNVRENFETITREIAETCKQAGRNADEVKLIAVTKYVTDARVEEALEAGITDFAENRPQN 60
Query: 60 --EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K K+ D IGSLQ+ KV ++++ D + R+ A + K+
Sbjct: 61 YVERKGKYS------DKTWHLIGSLQTRKVRDVINEVDYFHALDRDSLAKEIEKRAEKE- 113
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
+ ++QVN E K G+ + DF+ Q ++ V GLM + P + + + F
Sbjct: 114 --IKCFVQVNVSGEESKHGLTSEEAIDFIRSLEQYSKIKVVGLMTMAPFVEDEEILRNCF 171
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L ++ E K LSMGM+ D+++AI GAT +R+G+ + G
Sbjct: 172 RKLRQLRDEVKGLDLPYAPCEFLSMGMSNDYKIAIEEGATHIRVGTALVG 221
>gi|315283070|ref|ZP_07871341.1| pyridoxal phosphate enzyme, YggS family [Listeria marthii FSL
S4-120]
gi|313613278|gb|EFR87151.1| pyridoxal phosphate enzyme, YggS family [Listeria marthii FSL
S4-120]
Length = 229
Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats.
Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ L+ +IE++ + R V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLEKVTAQIEHACEESNREPKDVTLVAVTKTIDVAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + L + D+ +IGSLQ+ KV +++ D + ++ R A + K +
Sbjct: 61 FLEKTVALADKDDICWHYIGSLQTRKVKDVLPKIDYLHSLDRSSLAKEIEKRATK---SV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-NPKPH--FYLL 177
++QVN E K G + F+ + + GLM + P + + H F+ L
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQE-ADFTFIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGI 214
++ +E T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDYGIAITEGATFIRVGRAL 221
>gi|254522612|ref|ZP_05134667.1| pyridoxal phosphate enzyme, YggS family [Stenotrophomonas sp.
SKA14]
gi|219720203|gb|EED38728.1| pyridoxal phosphate enzyme, YggS family [Stenotrophomonas sp.
SKA14]
Length = 225
Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats.
Identities = 74/221 (33%), Positives = 105/221 (47%), Gaps = 11/221 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +A A RP L+AVSK ++ + + GQ F EN +QEA K
Sbjct: 5 LPQILSNLHAAAEAAGRP--DPRLLAVSKTQPAEAVAALAAQGQHAFGENYVQEALAKMQ 62
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L+ ++ IG LQSNK + S FD +++V R K + L+ L V IQV
Sbjct: 63 ALQ-HLALEWHLIGHLQSNKAEAVASHFDWVQSVDRPKLVTALARHRPATRGPLNVLIQV 121
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI--- 180
N E K G P++ + L + GLM IP P G + F + +
Sbjct: 122 NIDDESSKHGCTPDEVDALAAAIAAEPGLRLRGLMAIPAPWPDAGRRRDAFVRMRTLFQA 181
Query: 181 --ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
A+ ++ LSMGM+ D+ AIA GAT VRIG+ +FG RP
Sbjct: 182 LAAQHAQVDTLSMGMSSDYAEAIAEGATLVRIGTALFGARP 222
>gi|257056711|ref|YP_003134543.1| pyridoxal phosphate enzyme, YggS family [Saccharomonospora viridis
DSM 43017]
gi|256586583|gb|ACU97716.1| pyridoxal phosphate enzyme, YggS family [Saccharomonospora viridis
DSM 43017]
Length = 244
Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats.
Identities = 63/231 (27%), Positives = 105/231 (45%), Gaps = 15/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ +IE + R D V L+AV+K + L G EN+ QEA
Sbjct: 9 LATALRKITDRIEQACRRVGRSPDEVRLIAVTKTFPATDAAALLDLGVRNLGENRDQEAV 68
Query: 63 KKWIP---LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL------SLEM 113
K LR + DV+ +G LQ NK + +++V + A L +LE
Sbjct: 69 AKVREVGQLRPDADVRWHMVGRLQRNKARSVARWAAEVQSVDSLRLADALTKAVRAALEA 128
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLNVEGLMCIPPAMGNPKP 172
++ R L V +Q + + + G + + + Q+ L + G+M + P +P+P
Sbjct: 129 GERDRPLDVLVQASLDDDPSRGGCPIDDLSELADVIAQRGDYLRLRGVMAVAPLGVDPEP 188
Query: 173 HFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L+ +A + T++S GM+ D + AIA G+T VR+G+ + G R
Sbjct: 189 AFERLAAVAERLRKDHPEATEISAGMSGDLDQAIAYGSTCVRVGTALLGGR 239
>gi|146418812|ref|XP_001485371.1| hypothetical protein PGUG_03100 [Meyerozyma guilliermondii ATCC
6260]
Length = 256
Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats.
Identities = 79/238 (33%), Positives = 113/238 (47%), Gaps = 25/238 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + Q++ ++ +V LVAVSK+ + I + G F EN +QE
Sbjct: 23 LISAYEAISQRVSTTS-----NSRNVRLVAVSKLKPASDILALYNHGVRHFGENYVQELI 77
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD---VIETVSREKTASLLS-LEMIKQSR 118
K L K D++ FIG LQ+ K ++ D +ET+ K L + +
Sbjct: 78 GKAQELPK--DIKWHFIGGLQTGKCKDLAKGIDNLYAVETIDSLKKCKKLDTARLNAEKD 135
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-----QKYQLNVEGLMCIPPAM----GN 169
L VY+Q+NT E QKSG TKD R + +L ++GLM I
Sbjct: 136 PLNVYLQINTSGEEQKSGFSLLDTKDLKDTVRFLMSDECKKLKLQGLMTIGSFEASTLDE 195
Query: 170 PKPHFYLLS----EIARECKLT-KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
F LS E+ +E L +LSMGM+ DFE AI G+TSVR+GS IFG RP ++
Sbjct: 196 ENKDFKALSTVKTELDKEFNLDLELSMGMSNDFEQAIKQGSTSVRVGSSIFGARPPKS 253
>gi|88811611|ref|ZP_01126865.1| putative alanine racemase [Nitrococcus mobilis Nb-231]
gi|88791002|gb|EAR22115.1| putative alanine racemase [Nitrococcus mobilis Nb-231]
Length = 252
Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 101/228 (44%), Gaps = 12/228 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++I + A R + V L+ V+K V ++++R A G F ENK+QEA
Sbjct: 9 IRQHCDEVRRRIAQACARAGRAPEEVRLLPVTKTVAAERLRAAFVAGLTEFGENKIQEAD 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L V IG LQ+NK + V + + + A L + R L V
Sbjct: 69 AKAEHLADLP-VTWSIIGHLQTNKAKQAVRFAREFQALDSLRLAEALERRLQGAGRGLDV 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+QVNT E K G+ P DF+ L V GLM + + + F L
Sbjct: 128 LVQVNTSAEASKFGLAPEAVADFLRALPAFSALRVRGLMTLAVFDPDTVRVRACFRRLRV 187
Query: 180 IARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ L +LSMGM+ DFE A+ GAT VR+G IFG RP
Sbjct: 188 LRDRLRDAAPPAIALDELSMGMSGDFEAAVEEGATVVRVGQAIFGARP 235
>gi|282859305|ref|ZP_06268418.1| pyridoxal phosphate enzyme, YggS family [Prevotella bivia
JCVIHMP010]
gi|282587930|gb|EFB93122.1| pyridoxal phosphate enzyme, YggS family [Prevotella bivia
JCVIHMP010]
Length = 227
Score = 242 bits (618), Expect = 3e-62, Method: Composition-based stats.
Identities = 59/231 (25%), Positives = 105/231 (45%), Gaps = 26/231 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L K+ + V L+A+SK ++ I A + GQ +F E+++QE
Sbjct: 7 DVVTNLHSVLNKL----------PNGVRLIAISKYHPNEYIEAAYAEGQRVFGESQVQEL 56
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L K D++ FIG LQ+NKV IV +IE V K + + K R +
Sbjct: 57 SQKVETLPK--DIEWHFIGHLQTNKVKYIVPYISMIEAVDSVKLLREIEKQAAKHDRVVN 114
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
V ++++ E K G + + + ++ +++ GLM + +G+ +
Sbjct: 115 VLLELHIAQEESKYGFSFDDCRALLESGEWKKMPHVHISGLMMMASNVGDEAQIRKEMLS 174
Query: 177 LSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ E K + S GM+ D+++A+ +T VRIG+ IFG R
Sbjct: 175 AADFFDEVKQKYFADDSAFKERSWGMSHDYQIAVQCRSTMVRIGTTIFGPR 225
>gi|194364708|ref|YP_002027318.1| alanine racemase domain-containing protein [Stenotrophomonas
maltophilia R551-3]
gi|194347512|gb|ACF50635.1| alanine racemase domain protein [Stenotrophomonas maltophilia
R551-3]
Length = 225
Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats.
Identities = 73/221 (33%), Positives = 102/221 (46%), Gaps = 11/221 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L + +A A RP L+AVSK ++ + + GQ F EN +QEA K
Sbjct: 5 LPQILSNLHAAAEAAGRP--DPRLLAVSKTQPAEAVAALAAQGQHAFGENYVQEALAKMQ 62
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L+ D++ IG LQSNK + S FD +++V R K + L+ L V IQV
Sbjct: 63 ALQ-HLDLEWHLIGHLQSNKAEAVASHFDWVQSVDRPKLVTALARHRPVARGPLNVLIQV 121
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIARE 183
N E K G P + L + GLM IP P + F + + +
Sbjct: 122 NIDDESSKHGCAPEDVDALAAAIAAEPSLRLRGLMAIPAPWPEAERRRDAFVRMRTLFQS 181
Query: 184 C-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ LSMGM+ D+ AIA GAT VRIG+ +FG RP
Sbjct: 182 LVTQHAQIDTLSMGMSSDYAEAIAEGATLVRIGTALFGARP 222
>gi|87198458|ref|YP_495715.1| hypothetical protein Saro_0433 [Novosphingobium aromaticivorans DSM
12444]
gi|87134139|gb|ABD24881.1| Protein of unknown function UPF0001 [Novosphingobium
aromaticivorans DSM 12444]
Length = 191
Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats.
Identities = 78/191 (40%), Positives = 113/191 (59%), Gaps = 2/191 (1%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-EWDVQLRFIGSLQSNKV 87
+LVAVSK ++ I ++ GQ +F EN++QEA+ KW +R D+ L IG LQSNK
Sbjct: 2 TLVAVSKTKPAEAILDLVAQGQRVFGENRVQEAQAKWPAIRAAHPDISLHLIGQLQSNKA 61
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
+ ++LFD I ++ R + L+ K + +P ++QVN G E QK G +
Sbjct: 62 EDAIALFDCIHSLDRPSLVAALAKAQDKLGKRVPCFVQVNIGAEEQKGGCAVADLPALLA 121
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATS 207
R+K ++V GLMC+PPA P F LL ++A + L+ LSMGM+ D E A+ GAT
Sbjct: 122 DAREK-GIDVVGLMCVPPAGIEAAPFFALLDKLADDNGLSGLSMGMSDDLETAVQLGATH 180
Query: 208 VRIGSGIFGER 218
VR+GS +FGER
Sbjct: 181 VRVGSALFGER 191
>gi|303326576|ref|ZP_07357019.1| pyridoxal phosphate enzyme, YggS family [Desulfovibrio sp.
3_1_syn3]
gi|302864492|gb|EFL87423.1| pyridoxal phosphate enzyme, YggS family [Desulfovibrio sp.
3_1_syn3]
Length = 239
Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats.
Identities = 79/232 (34%), Positives = 116/232 (50%), Gaps = 13/232 (5%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ ++++ + A R ++ V+L+AVSK+ + + GQV F EN +QEA +
Sbjct: 8 RERYTRVLERLDAACAAAGRGREDVALIAVSKLHPAADVAAVARAGQVDFGENYVQEALQ 67
Query: 64 KWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L E +V+ IG +QS K +++ F +I T+ K A L +
Sbjct: 68 KREELAGEPACRNVRWHMIGHVQSRKAAQVAGAFALIHTLDSRKLADGLERRLAVLEARQ 127
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVI-LCRQKYQLNVEGLMCIPPAMG---NPKPHFYL 176
PV ++VN E QKSGIM + L + GLMC+PP +PHF
Sbjct: 128 PVLMEVNVAAEPQKSGIMAEDLPVLADYIVENCPHLELRGLMCLPPVFDAGEAARPHFAR 187
Query: 177 LSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L + E + L +LSMGM+ DFE A+A GAT VRIG+ IFG RP +T
Sbjct: 188 LRVLCEELRARLGLPLPELSMGMSGDFEAAVAEGATLVRIGTDIFGPRPPRT 239
>gi|254282330|ref|ZP_04957298.1| pyridoxal phosphate enzyme, YggS family [gamma proteobacterium
NOR51-B]
gi|219678533|gb|EED34882.1| pyridoxal phosphate enzyme, YggS family [gamma proteobacterium
NOR51-B]
Length = 229
Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats.
Identities = 74/202 (36%), Positives = 101/202 (50%), Gaps = 9/202 (4%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ V+L+AVSK + +R A G F EN LQ+A+ K LR ++ FIG LQS
Sbjct: 28 PECVALLAVSKTKPAAMVRAAAEAGLHAFGENYLQDAETKIEELRD-LGLEWHFIGPLQS 86
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK I + FD + +V R K A LS + + L + +QVN E KSG++P Q D
Sbjct: 87 NKTRTIAANFDWVHSVDRLKIARRLSEQRPEALGPLNICLQVNISGEPSKSGVLPGQVPD 146
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAREC-----KLTKLSMGMTRD 196
+ + GLM IP +P + F L + L LSMGM+ D
Sbjct: 147 LAATVASLPGITLRGLMAIPAPETDPVKQRQPFAALRHLLESLSDSLPHLDTLSMGMSSD 206
Query: 197 FELAIASGATSVRIGSGIFGER 218
E AIA GAT VR+G+ +FG R
Sbjct: 207 LEAAIAEGATIVRVGTDLFGAR 228
>gi|20808029|ref|NP_623200.1| TIM-barrel fold family protein [Thermoanaerobacter tengcongensis
MB4]
gi|254478764|ref|ZP_05092132.1| conserved hypothetical protein TIGR00044 [Carboxydibrachium
pacificum DSM 12653]
gi|20516607|gb|AAM24804.1| predicted enzyme with a TIM-barrel fold [Thermoanaerobacter
tengcongensis MB4]
gi|214035276|gb|EEB75982.1| conserved hypothetical protein TIGR00044 [Carboxydibrachium
pacificum DSM 12653]
Length = 197
Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats.
Identities = 64/197 (32%), Positives = 101/197 (51%), Gaps = 12/197 (6%)
Query: 32 AVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV 91
A +K I+ A+SCG EN++QE +K+ L+ + D FIG LQ+NKV I+
Sbjct: 2 AATKTFGVDAIKEAISCGITAIGENRVQELMEKYPHLKGQVD--FHFIGHLQTNKVKYII 59
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
++ ++ REK A + ++ + I+VN G E K GI P + + V +
Sbjct: 60 DKVKLVHSLDREKLAEEIDKRAKQKGIIMDCLIEVNIGGEDTKFGISPEEMHNLVKKLEK 119
Query: 152 KYQLNVEGLMCIPPAM--GNPKPHFYLLSEIARECK--------LTKLSMGMTRDFELAI 201
+ ++GLM I P + +P+F + E+ + K LSMGM+ D+ +A+
Sbjct: 120 YDNIKIKGLMTIAPYLPPEEVRPYFKRMRELFEDLKRINQRNVEAQYLSMGMSNDYWVAV 179
Query: 202 ASGATSVRIGSGIFGER 218
GA VRIG+ IFGER
Sbjct: 180 EEGANIVRIGTAIFGER 196
>gi|307266460|ref|ZP_07547995.1| alanine racemase domain protein [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306918501|gb|EFN48740.1| alanine racemase domain protein [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 202
Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats.
Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 12/199 (6%)
Query: 32 AVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV 91
A +K + I+ A++CG ENK+QE +K+ L+ E V+ FIG LQ+NKV I+
Sbjct: 2 AATKTFGVETIKEAIACGITDIGENKVQELNEKYPYLKNE--VEFHFIGHLQTNKVKYII 59
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
+I ++ K A + ++S + +++N G E K GI P + +FV +
Sbjct: 60 DKVKLIHSLDSIKLAEEIDKRAKQKSLVIDCLVEINIGGEESKYGIPPEEMHNFVKEMEK 119
Query: 152 KYQLNVEGLMCIPPAM--GNPKPHFYLLSEIARECK--------LTKLSMGMTRDFELAI 201
+ + GLM I P + +P+F + E+ E K + LSMGM+ D+ +A+
Sbjct: 120 YDNIRIRGLMTIAPYLPPEEVRPYFRKMKELFEELKEIKQHNVQVEFLSMGMSNDYWVAV 179
Query: 202 ASGATSVRIGSGIFGERPC 220
GA VRIG+ IFG+R
Sbjct: 180 EEGANIVRIGTSIFGQRQY 198
>gi|218960505|ref|YP_001740280.1| predicted enzyme with a TIM-barrel fold [Candidatus Cloacamonas
acidaminovorans]
gi|167729162|emb|CAO80073.1| predicted enzyme with a TIM-barrel fold [Candidatus Cloacamonas
acidaminovorans]
Length = 233
Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats.
Identities = 70/231 (30%), Positives = 115/231 (49%), Gaps = 13/231 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ + I + R KD ++LVAV+K + I AL G EN++QE
Sbjct: 1 MNIAENIKHLQDNIADILSRLNR-KDEITLVAVTKTHPVEIIETALQSGIEHIGENRVQE 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD-VIETVSREKTASLLSLEMIKQSRF 119
A++K P K FIG LQSNK+++++ L +I++V + A L L + + +R
Sbjct: 60 ARRKI-PFLKVPYKGFHFIGHLQSNKINQVLELKPFLIQSVHSLELAKKLHLALGRTNRT 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLL 177
+ IQ+N+ E KSG + K+ + L+++GLM I +P F +
Sbjct: 119 QDILIQINSSQEFSKSGFSLAEAKNAICQISTYSNLHIKGLMTIGMLAEPEVSRPLFARM 178
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E K + LSMGM+ D+ A+ G+ +RIG+ IFGER
Sbjct: 179 KSLFEEIKALAIPNVDMQYLSMGMSNDYVQALEEGSNMLRIGTAIFGERSY 229
>gi|162148167|ref|YP_001602628.1| alanine racemase [Gluconacetobacter diazotrophicus PAl 5]
gi|161786744|emb|CAP56327.1| putative alanine racemase [Gluconacetobacter diazotrophicus PAl 5]
Length = 248
Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats.
Identities = 91/197 (46%), Positives = 124/197 (62%), Gaps = 1/197 (0%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIGSLQ 83
D+V+LVAVSK + AL GQ++F EN++QEA K+ LR +W ++L IG LQ
Sbjct: 40 PDAVTLVAVSKFHPQSSVVAALEAGQMVFGENRVQEAAGKFPSLRADWPALRLHVIGGLQ 99
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
+NK + V + D+IE++ R A L+ + R + +QVNTG E QKSG+ Q
Sbjct: 100 TNKALDAVRIADMIESLDRPALADALARAADRAGRLPDLLVQVNTGDEAQKSGVPRAQAD 159
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIAS 203
F+ CR+++ V GLMCIPPA +P PHF L+E+ R L LSMGM+ DFE AIA+
Sbjct: 160 AFITDCRRRFGDAVRGLMCIPPADRDPAPHFAFLAELGRAHGLEVLSMGMSADFEAAIAA 219
Query: 204 GATSVRIGSGIFGERPC 220
GAT VR+GS IFG+RP
Sbjct: 220 GATHVRVGSAIFGQRPA 236
>gi|291542657|emb|CBL15767.1| pyridoxal phosphate enzyme, YggS family [Ruminococcus bromii L2-63]
Length = 237
Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats.
Identities = 71/226 (31%), Positives = 121/226 (53%), Gaps = 12/226 (5%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+ ++I +A + R ++ ++ +A +KMV+ + I A+S G ENK+QE K+
Sbjct: 12 NYKFIDERIAEAAEKSGRKREDITFLAATKMVEPEVINHAISLGLDHIGENKVQELLSKY 71
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ + L+FIG LQ+NKV +I+ D+I++V K AS +S + +K ++ V ++
Sbjct: 72 DKYNLD-NCSLQFIGHLQTNKVRQIIDKVDLIQSVDSIKLASEISKQALKINKNCDVLVE 130
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEIA- 181
VN G E KSG+MP Q ++ + + ++V+GLM IPP + + F + I
Sbjct: 131 VNIGREENKSGVMPEQLEELLCQIAELDGISVKGLMAIPPICESSQKISEFFNKMHNIFI 190
Query: 182 -------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGM+ D+ A+ +GA VR+GS +FG R
Sbjct: 191 DISQKKLDNIDMNILSMGMSADYYEAVLAGANMVRVGSALFGARNY 236
>gi|55820802|ref|YP_139244.1| hypothetical protein stu0736 [Streptococcus thermophilus LMG 18311]
gi|55822703|ref|YP_141144.1| hypothetical protein str0736 [Streptococcus thermophilus CNRZ1066]
gi|55736787|gb|AAV60429.1| conserved hypothetical protein [Streptococcus thermophilus LMG
18311]
gi|55738688|gb|AAV62329.1| conserved hypothetical protein [Streptococcus thermophilus
CNRZ1066]
Length = 227
Score = 241 bits (617), Expect = 4e-62, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 15/228 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ Q ++ + A R + V+++AV+K V S+ + G AEN++ +
Sbjct: 1 MTIEENKNDVYQAVKRACEKANRSSEEVNIIAVTKYVSSEIAEELVETGIKHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+K +D+ IG+LQ KV ++++L D + K A + +
Sbjct: 61 FLDKYQALKK-YDLTWHLIGTLQRRKVKDVINLVDYFHALDSVKLAEEIQKRA---DHTI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G P + + + ++ + GLM + P N + F
Sbjct: 117 NCFLQVNVSGEESKHGFSPEELDTVLNQIKNLDKICIVGLMTMAPIDANTQELDKIFAET 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E+ + + +LSMGM+RD+++AI +G+T VRIGS F E
Sbjct: 177 NELRQSIQDKKLKNVPCDQLSMGMSRDYDIAIQNGSTFVRIGSAFFKE 224
>gi|217967624|ref|YP_002353130.1| alanine racemase domain protein [Dictyoglomus turgidum DSM 6724]
gi|217336723|gb|ACK42516.1| alanine racemase domain protein [Dictyoglomus turgidum DSM 6724]
Length = 235
Score = 241 bits (617), Expect = 5e-62, Method: Composition-based stats.
Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 10/222 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + +++I A R +S+VAV+K + IR A+ G EN++QEA+
Sbjct: 7 IAENWKRVQERIIKKAEECGRDPSEISVVAVAKGYPPEYIREAVKIGINKIGENRVQEAE 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KK L + +G LQ NKV + V +F +I +V A ++ K+ + + +
Sbjct: 67 KKISLLSDLP-CEWHMVGHLQRNKVKKAVKMFFLIHSVDSLDLAEEINKHAGKEGKKVDI 125
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSE 179
+Q+N E K G + LN++GLM I P + + F L
Sbjct: 126 LLQLNLSKEPTKHGFKEEEFWRTYEKIFALKNLNIKGLMTIGPLTQDKDAIREVFRKLYN 185
Query: 180 IAR------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
I + + L LSMGM+ DFE+AI G+ +R+G IF
Sbjct: 186 IWKKLIELTKLDLPYLSMGMSEDFEIAIEEGSNILRLGRIIF 227
>gi|217963824|ref|YP_002349502.1| pyridoxal phosphate enzyme, YggS family [Listeria monocytogenes
HCC23]
gi|217333094|gb|ACK38888.1| pyridoxal phosphate enzyme, YggS family [Listeria monocytogenes
HCC23]
gi|307571605|emb|CAR84784.1| conserved hypothetical protein [Listeria monocytogenes L99]
Length = 229
Score = 241 bits (616), Expect = 5e-62, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R V+LVAV+K +D+ I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQAKDVTLVAVTKTIDAAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K + L + D+ +IGSLQ+ KV +++ D + ++ R A + K +
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDRSSLAKEIEKRATK---PV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-NPKPH--FYLL 177
++QVN E K G + F+ + + GLM + P + + H F+ L
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQE-ANFTFIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGI 214
++ +E T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVGRAL 221
>gi|281355307|ref|ZP_06241801.1| alanine racemase domain protein [Victivallis vadensis ATCC BAA-548]
gi|281318187|gb|EFB02207.1| alanine racemase domain protein [Victivallis vadensis ATCC BAA-548]
Length = 226
Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats.
Identities = 65/206 (31%), Positives = 98/206 (47%), Gaps = 11/206 (5%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81
R D V L+AVSK ++ IR G +F E++ E +K L D++ FIG
Sbjct: 23 GRSADEVRLLAVSKTFPAEMIRELYEHGVRLFGESRAPELAEKAAALPA--DIEWHFIGR 80
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQ+NKV ++V L VI +V + + + ++ R V ++ N E K+G+ +
Sbjct: 81 LQANKVRKVVQLAGVIHSVDTPELLTRIDRIAGEEGRRPVVLLEANVSGEESKAGVPVGE 140
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAREC------KLTKLSMG 192
+ F ++ +G M + P P F LL E +L LSMG
Sbjct: 141 LEAFARQAASLPNVDFQGFMTMAPFDAEPFRIAAIFELLKLTRDELEGKLNRQLPILSMG 200
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ DFE+A G+T VR+GS IFG R
Sbjct: 201 MSGDFEIAARHGSTLVRVGSLIFGAR 226
>gi|313632496|gb|EFR99508.1| pyridoxal phosphate enzyme, YggS family [Listeria seeligeri FSL
N1-067]
Length = 229
Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ L+ ++IE + + R K V+LVAV+K +D+ ++ G F EN+
Sbjct: 1 MTKQANLEKVTKQIELACTESNRDKTDVTLVAVTKTIDATEMTELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L + D+ +IGSLQ+ KV +++ D + ++ R A + K +
Sbjct: 61 FLEKTTQLANKDDICWHYIGSLQTRKVKDVLPKIDYLHSLDRASLAKEIEKRATK---PV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-NPKPH--FYLL 177
++QVN E K G + F+ + + GLM + P + + H F+ L
Sbjct: 118 KCFLQVNISGEETKHGFSKEEALSFLQE-ADFKYIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGI 214
++ +E T+LSMGMT DF +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDFGIAITEGATFIRVGRAL 221
>gi|302346534|ref|YP_003814832.1| pyridoxal phosphate enzyme, YggS family [Prevotella melaninogenica
ATCC 25845]
gi|302150942|gb|ADK97203.1| pyridoxal phosphate enzyme, YggS family [Prevotella melaninogenica
ATCC 25845]
Length = 223
Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats.
Identities = 60/231 (25%), Positives = 106/231 (45%), Gaps = 26/231 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ N L D V LVA+SK ++ + VA GQ IF E+++QE
Sbjct: 3 DVANNLHEVL----------GNLPDGVKLVAISKFHPNEYLEVAYREGQRIFGESQVQEL 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L K D++ FIG LQ+NKV I ++E V K ++ + K +R +
Sbjct: 53 SRKVETLPK--DIEWHFIGHLQTNKVKYIAPYISIVEAVDSLKLLKEINKQAAKFNRIIN 110
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPK-------- 171
V ++++ E K G P+ ++ + ++ +++ GLM + + +
Sbjct: 111 VLLELHIAEEETKYGFTPDACRELLEGGEWKELKNVHISGLMMMASNVDDRNQIKKEMML 170
Query: 172 --PHFYLLSE--IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L A + + + S GM+ D+++A+ +T VR+G+ IFG R
Sbjct: 171 AADLFDELKAKYFADDPEFKERSWGMSHDYDIAVECRSTMVRVGTTIFGPR 221
>gi|290892177|ref|ZP_06555173.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|290558300|gb|EFD91818.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
Length = 229
Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R V+LVAV+K +D+ I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQAKEVTLVAVTKTIDAAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K + L + D+ +IGSLQ+ KV +++ D + ++ R A + K +
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDRSSLAKEIEKRATK---PV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-NPKPH--FYLL 177
++QVN E K G + F+ + + GLM + P + + H F+ L
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQE-ANFTFIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGI 214
++ +E T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVGRAL 221
>gi|195159394|ref|XP_002020564.1| GL14062 [Drosophila persimilis]
gi|198449718|ref|XP_002136950.1| GA26943 [Drosophila pseudoobscura pseudoobscura]
gi|194117333|gb|EDW39376.1| GL14062 [Drosophila persimilis]
gi|198130728|gb|EDY67508.1| GA26943 [Drosophila pseudoobscura pseudoobscura]
Length = 254
Score = 241 bits (616), Expect = 6e-62, Method: Composition-based stats.
Identities = 80/247 (32%), Positives = 116/247 (46%), Gaps = 28/247 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
+ LQ ++I+ +L +RPK+ LVAVSK + + A GQ F EN
Sbjct: 10 DIKAGLQQVLKRIDE--VLLQRPKEIQAAKPLLVAVSKTKPADAVIEAYKTGQRDFGENY 67
Query: 58 LQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLE 112
+QE +K L + D++ FIG LQ+NK+++I + +I+TV EK A+ L
Sbjct: 68 VQELVEKSQHPEILAQCPDIKWHFIGHLQNNKINKILSLPNLHMIQTVDSEKLATKLDAA 127
Query: 113 MIKQS----RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAM 167
K L V IQ+NT E KSGI + + L + G+M I
Sbjct: 128 WSKLKPDTEPPLRVLIQINTSGEEAKSGIETKEAPKLYQFISKNLKHLQLVGIMTIGAFG 187
Query: 168 GN----PKPHFYLLSEIARE-CKLTKL-------SMGMTRDFELAIASGATSVRIGSGIF 215
+ P P F L E+ R C+ L SMGM+ D++ AI G+T VR+GS IF
Sbjct: 188 FDYSTGPNPDFVSLMEVHRSICEANSLTPNSVLVSMGMSNDYDRAIEMGSTVVRVGSSIF 247
Query: 216 GERPCQT 222
G R +
Sbjct: 248 GHRAVKA 254
>gi|300865596|ref|ZP_07110373.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
gi|300336411|emb|CBN55523.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
Length = 232
Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats.
Identities = 66/228 (28%), Positives = 106/228 (46%), Gaps = 21/228 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +++ +Q++ SV L+AVSK V +R A + G F E+++QEA
Sbjct: 3 NIADRIANIRQQL----------PPSVRLIAVSKQVSVDAMRSAYAAGVRDFGESRIQEA 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K ++ D+ IG LQ+NK ++ V F I +V K A L + +
Sbjct: 53 ADKQAQMQDLPDITWHLIGHLQANKAAKAVQQFQWIHSVDSLKLAQRLDRLAEELAYQPQ 112
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLS 178
+QV + K G + + Q L ++GLM IPP + F
Sbjct: 113 ACLQVKILPDRDKYGWSIPELLADLPEINQCRSLRIKGLMTIPPLGLDEAQTISLFNTAR 172
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A + + + +LSMGM+ D+ LAI +GAT VR+G +FGER
Sbjct: 173 ELAEKIRQQNWSHIEMQQLSMGMSGDYHLAIQAGATMVRVGRTLFGER 220
>gi|45550861|ref|NP_651776.2| CG1983 [Drosophila melanogaster]
gi|28316960|gb|AAO39501.1| RE46560p [Drosophila melanogaster]
gi|45446716|gb|AAF57017.2| CG1983 [Drosophila melanogaster]
gi|220948568|gb|ACL86827.1| CG1983-PA [synthetic construct]
gi|220957842|gb|ACL91464.1| CG1983-PA [synthetic construct]
Length = 254
Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats.
Identities = 80/247 (32%), Positives = 115/247 (46%), Gaps = 30/247 (12%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVS-----LVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ LQ ++I+ +L +R V LVAVSK ++ + A GQ F EN
Sbjct: 10 DVKAGLQHVLKRIDE--VLLQR-PKEVQAARPLLVAVSKTKPAEAVIEAYEGGQRDFGEN 66
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSL 111
+QE ++K L K D++ FIG +QSNK+++I V +I+TV EK A+ L
Sbjct: 67 YVQELEEKSRHPDILAKCPDIRWHFIGHMQSNKINKILSVPNLHMIQTVDSEKLATKLDA 126
Query: 112 EMIKQ----SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPA 166
K+ L V IQ+NT E KSGI + LN+ G+M I
Sbjct: 127 AWSKRQPTPEEPLQVLIQINTSGEDVKSGIEAKDAPALYQYIKSNLKHLNLMGIMTIGAF 186
Query: 167 MGN----PKPHFYLLSEIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGI 214
+ P P F L ++ R +SMGM+ DF+ AI G+T VR+GS I
Sbjct: 187 GFDYSNGPNPDFVSLMQVHRSICEAHSLAPDSVLVSMGMSNDFDKAIEMGSTVVRVGSSI 246
Query: 215 FGERPCQ 221
FG R +
Sbjct: 247 FGHRAAK 253
>gi|320581837|gb|EFW96056.1| Single-domain racemase, possibly non-specific due to the lack of
the second domain [Pichia angusta DL-1]
Length = 236
Score = 241 bits (615), Expect = 6e-62, Method: Composition-based stats.
Identities = 80/225 (35%), Positives = 117/225 (52%), Gaps = 19/225 (8%)
Query: 14 IENSAILAKRPK---DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+ N+ +A+R K D LV VSK + I+ G F EN +QE +K L K
Sbjct: 14 VSNANKIAQRVKELNDKARLVCVSKFKPASDIKALYDAGYRHFGENYVQELLEKAKVLPK 73
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFD---VIETVSREKTASLLSLEMIKQSRF-LPVYIQV 126
D+Q FIG LQ+NK ++ D +ET+ EK A L+ + + + VYIQV
Sbjct: 74 --DIQWHFIGGLQTNKTKDLAKNIDNLYAVETIDTEKKARKLNDVRAQCGKPIINVYIQV 131
Query: 127 NTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAM----GNPKPHFYLLSEIA 181
NT E QKSGI P + + + +LN+EGLM I + + F L E++
Sbjct: 132 NTSGEEQKSGIAPEECLQLAKIIVNECPKLNLEGLMTIGSIVQSISSDENQDFKTLVEVS 191
Query: 182 RECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ + +LSMGM+ DFE A+ G++SVR+GS IFG RP +
Sbjct: 192 KKLEAELGRKLELSMGMSNDFEEALRQGSSSVRVGSNIFGSRPTK 236
>gi|224498518|ref|ZP_03666867.1| hypothetical protein LmonF1_02029 [Listeria monocytogenes Finland
1988]
Length = 229
Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats.
Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE++ + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIEHACEESNRQSEDVTLVAVTKTIDVTGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + L + D+ +IGSLQ+ KV +++ D + ++ R A + K +
Sbjct: 61 FLEKTVELADKDDICWHYIGSLQTRKVKDVLPQIDYLHSLDRSSLAKEIEKRATK---PV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-NPKPH--FYLL 177
++QVN E K G + F+ + + GLM + P + + H F+ L
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQE-ANFTFIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 178 SEIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGI 214
++ +E +LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCIELSMGMTNDYGIAITEGATFIRVGRAL 221
>gi|325855519|ref|ZP_08171856.1| pyridoxal phosphate enzyme, YggS family [Prevotella denticola CRIS
18C-A]
gi|325483802|gb|EGC86761.1| pyridoxal phosphate enzyme, YggS family [Prevotella denticola CRIS
18C-A]
Length = 223
Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats.
Identities = 59/231 (25%), Positives = 100/231 (43%), Gaps = 26/231 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L+ D V LVA+SK + I A GQ +F E++ QE
Sbjct: 3 DVAKNLREVL----------GSLPDGVRLVAISKFHPVEYIEAAYREGQRVFGESQEQEL 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L K D++ FIG LQ+NKV I +IE V K ++ + + R +
Sbjct: 53 ARKVESLPK--DIEWHFIGHLQTNKVKYIAPYISMIEAVDSLKLLKEINKQAARYDRVIN 110
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGN---------- 169
V ++++ E K G P ++ + ++ +++ GLM + + N
Sbjct: 111 VLLELHIAEEESKYGFTPAACRELLENGEWKELRNVHISGLMMMASNVDNRSQIRGEMTL 170
Query: 170 PKPHFYLLSE--IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L A + + S GM+ D+++A+ +T VR+G+ IFG R
Sbjct: 171 AADLFDELKARFFADDPAFKERSWGMSHDYDIAVECRSTMVRVGTAIFGPR 221
>gi|312278127|gb|ADQ62784.1| Predicted enzyme with a TIM-barrel fold [Streptococcus thermophilus
ND03]
Length = 227
Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats.
Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 15/228 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ Q ++ + A R + V+++AV+K V S+ + G AEN++ +
Sbjct: 1 MTIEENKNDVYQAVKRACEKANRSSEEVNIIAVTKYVSSEIAEELVETGIKHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+K +D+ IGSLQ KV ++++L D + K A + +
Sbjct: 61 FLDKYQALKK-YDLTWHLIGSLQRRKVKDVINLVDYFHALDSVKLAEEIQKRA---DHTI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G P + + + ++ + GLM + P N + F
Sbjct: 117 NCFLQVNVSGEESKHGFSPEELDTVLNQIKNLDKICIVGLMTMAPIDANTQELDKIFAET 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E+ + + +LSMGM+RD+++AI +G+T VRIGS F E
Sbjct: 177 NELRQSIQDKKLKNVPCDQLSMGMSRDYDMAIQNGSTFVRIGSAFFKE 224
>gi|260912321|ref|ZP_05918872.1| K+ uptake protein [Prevotella sp. oral taxon 472 str. F0295]
gi|260633622|gb|EEX51761.1| K+ uptake protein [Prevotella sp. oral taxon 472 str. F0295]
Length = 224
Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats.
Identities = 62/233 (26%), Positives = 105/233 (45%), Gaps = 26/233 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L+ Q + +V LVAVSK ++++ A GQ IF E+ QE
Sbjct: 4 DVAGNLKRVVQSL----------PPNVKLVAVSKFHPNEELMAAYEQGQRIFGESHEQEL 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L K D+ FIG LQSNKV I D+IE V K ++ + + R +
Sbjct: 54 SRKAAELPK--DIAWHFIGHLQSNKVKYIAPYIDMIEAVDSLKLLREINKQAERCGRVID 111
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKP------- 172
V ++++ E K G + ++ + R+ + + GLM + + + +
Sbjct: 112 VLLELHVAQEASKFGFTLDACRELLAGGEWRELSHVRICGLMTMASNVDDEQQIRTEMTT 171
Query: 173 ---HFYLLSEI--ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F + + A + + S GM+ D+ +A+ G+T VR+G+ IFGER
Sbjct: 172 TWRFFDEMKSLHFAHDDAFKERSWGMSHDYPIALQCGSTMVRVGTNIFGERQY 224
>gi|169831572|ref|YP_001717554.1| alanine racemase domain-containing protein [Candidatus Desulforudis
audaxviator MP104C]
gi|169638416|gb|ACA59922.1| alanine racemase domain protein [Candidatus Desulforudis
audaxviator MP104C]
Length = 234
Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats.
Identities = 73/226 (32%), Positives = 114/226 (50%), Gaps = 12/226 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L+ +++I +A A R ++V LVAVSK + ++IR A+ G IF E+++QE
Sbjct: 5 DVVHNLEQVRRRIAAAARRAGRDPETVGLVAVSKSIGPEQIRKAMEAGVQIFGESRVQEL 64
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K + FIG LQ NKV +V ++I ++ R A L +Q +
Sbjct: 65 VRKH---PDVPGPRWHFIGHLQRNKVKYLVGRVELIHSLDRWSLAEELDRRAREQGQPFR 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
V +QV G E K G+ + DFV L VEGLM + P +P +P+F +
Sbjct: 122 VLVQVKVGAEEGKFGVEAVKVGDFVNRVAGLRGLRVEGLMAMAPFCDDPEQARPYFREVK 181
Query: 179 EIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + LSMGM+ D+E+A+ GA VR+G+ IFG R
Sbjct: 182 RLFDGLAGVPGFERRYLSMGMSSDYEVAVEEGANLVRVGTAIFGPR 227
>gi|47097620|ref|ZP_00235144.1| conserved hypothetical protein TIGR00044 [Listeria monocytogenes
str. 1/2a F6854]
gi|254899271|ref|ZP_05259195.1| pyridoxal phosphate enzyme, YggS family protein [Listeria
monocytogenes J0161]
gi|254912590|ref|ZP_05262602.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254936916|ref|ZP_05268613.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|47014007|gb|EAL05016.1| conserved hypothetical protein TIGR00044 [Listeria monocytogenes
str. 1/2a F6854]
gi|258609516|gb|EEW22124.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|293590581|gb|EFF98915.1| conserved hypothetical protein [Listeria monocytogenes J2818]
Length = 229
Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R V+LVAV+K +D+ I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQAKEVTLVAVTKTIDAAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K + L + D+ +IGSLQ+ KV +++ D + ++ R A + K +
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPQIDYLHSLDRSSLAKEIEKRATK---PV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-NPKPH--FYLL 177
++QVN E K G + F+ + + GLM + P + + H F+ L
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQE-ANFTFIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGI 214
++ +E T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDYGIAITEGATFIRVGRAL 221
>gi|326389984|ref|ZP_08211547.1| alanine racemase domain protein [Thermoanaerobacter ethanolicus JW
200]
gi|325994044|gb|EGD52473.1| alanine racemase domain protein [Thermoanaerobacter ethanolicus JW
200]
Length = 202
Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats.
Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 12/199 (6%)
Query: 32 AVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV 91
A +K + I+ A++CG ENK+QE +K+ L+ E V+ FIG LQ+NKV I+
Sbjct: 2 AATKTFGVETIKEAIACGITDIGENKVQELNEKYPYLKNE--VEFHFIGHLQTNKVKYII 59
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
+I ++ K A + ++S + +++N G E K GI P + +FV +
Sbjct: 60 DKVKLIHSLDSIKLAEEIDKRAKQKSLIIDCLVEINIGGEENKYGIPPEEMHNFVKEMEK 119
Query: 152 KYQLNVEGLMCIPPAM--GNPKPHFYLLSEIARECK--------LTKLSMGMTRDFELAI 201
+ + GLM I P + +P+F + E+ E K + LSMGM+ D+ +A+
Sbjct: 120 YDNIRIRGLMTIAPYLPPEEVRPYFRKMKELFEELKEIKQHNVQVEFLSMGMSNDYWVAV 179
Query: 202 ASGATSVRIGSGIFGERPC 220
GA VRIG+ IFG+R
Sbjct: 180 EEGANIVRIGTSIFGQRQY 198
>gi|255027924|ref|ZP_05299910.1| pyridoxal phosphate enzyme, YggS family protein [Listeria
monocytogenes FSL J2-003]
Length = 229
Score = 241 bits (615), Expect = 7e-62, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R V+LVAV+K +D+ I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQAKEVTLVAVTKTIDAAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K + L + D+ +IGSLQ+ KV +++ D + ++ R A + K +
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPQIDYLHSLDRSSLAKEIEKRATK---PV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-NPKPH--FYLL 177
++QVN E K G + F+ + + GLM + P + + H F+ L
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQE-ANFTFIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGI 214
++ +E T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDYGIAITEGATFIRVGRAL 221
>gi|118595166|ref|ZP_01552513.1| hypothetical protein MB2181_05820 [Methylophilales bacterium
HTCC2181]
gi|118440944|gb|EAV47571.1| hypothetical protein MB2181_05820 [Methylophilales bacterium
HTCC2181]
Length = 221
Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats.
Identities = 82/224 (36%), Positives = 114/224 (50%), Gaps = 15/224 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + Q+IE+ + R +VAVSK DS KI A+ GQ IF EN +QEA
Sbjct: 4 IKKNLLILNQQIESI-KASNRTV----IVAVSKKQDSSKIIEAIKSGQTIFGENYVQEAL 58
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L+K ++++ FIG +QSNK I F ++TV R KTA ++ + + V
Sbjct: 59 EKQEILKK-YNLEWHFIGPIQSNKCKAIAENFSWVQTVDRLKTAIRINDAR-EGMEPINV 116
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+Q+N E K G+M +D + LN+ GLM IP N K F LL
Sbjct: 117 CLQINISSEDSKGGVMLEAAEDLFKEVSKLKNLNIRGLMAIPSNTSNAHVLKKEFQLLKN 176
Query: 180 IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E K + LSMGM+ D+ AI GA +R+GS IFGER
Sbjct: 177 AYDEFKKTYPSIDTLSMGMSNDYLEAIQQGANMIRVGSNIFGER 220
>gi|256425243|ref|YP_003125896.1| alanine racemase [Chitinophaga pinensis DSM 2588]
gi|256040151|gb|ACU63695.1| alanine racemase domain protein [Chitinophaga pinensis DSM 2588]
Length = 225
Score = 241 bits (615), Expect = 8e-62, Method: Composition-based stats.
Identities = 62/211 (29%), Positives = 98/211 (46%), Gaps = 18/211 (8%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
+ LVAVSK+ + I+ GQ IF EN +QE ++K L D++ FIG LQ
Sbjct: 16 KPYNAKLVAVSKIKPASDIQALYDAGQRIFGENYVQELQEKQPLLPA--DIEWHFIGHLQ 73
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG----IMP 139
SNKV I ++ V K +S + K +R + +QV+ E K G +
Sbjct: 74 SNKVKYIAPFVSMVHAVDSLKLLEEISKQAAKHNRMIRCLLQVHIATEETKFGLDEKELL 133
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIARECK---------LT 187
+ + + + + GLM + + + F L + + K LT
Sbjct: 134 ELLEAYKQQEARFANIRIAGLMGMATNTDDMQQVRNEFRHLHALQQNMKQRFFSDTDALT 193
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LS+GM+ D+ +A+ G+T VRIGS +FG R
Sbjct: 194 ELSVGMSGDYTIALEEGSTMVRIGSMLFGAR 224
>gi|253996004|ref|YP_003048068.1| alanine racemase domain-containing protein [Methylotenera mobilis
JLW8]
gi|253982683|gb|ACT47541.1| alanine racemase domain protein [Methylotenera mobilis JLW8]
Length = 232
Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats.
Identities = 77/225 (34%), Positives = 104/225 (46%), Gaps = 10/225 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N+LQ I+++A + + V L+AVSK + IR A + GQ F EN QEA
Sbjct: 3 TISNRLQDILATIQSAAATSP-SQQQVQLLAVSKAQPAAAIREAYAAGQTAFGENYSQEA 61
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L ++ FIG +QSNK I F + +V R K A L+ L
Sbjct: 62 VEKQKQLTD-LAIEWHFIGPIQSNKTQLIAQHFSWVHSVDRLKIAQRLNEARSSMPLPLQ 120
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE-- 179
V IQVN E KSG+ P Q + L + GLM IP +
Sbjct: 121 VCIQVNVSNEDTKSGVPPEQLEALASAISALPHLKLRGLMAIPAPTTETAKQIAQFKQVR 180
Query: 180 ------IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I + L LS+GM+ D+ AIA GAT VRIGS +FG R
Sbjct: 181 ECYDALIRKGFALNTLSIGMSSDYPAAIAQGATIVRIGSALFGAR 225
>gi|116627606|ref|YP_820225.1| hypothetical protein STER_0778 [Streptococcus thermophilus LMD-9]
gi|116100883|gb|ABJ66029.1| Predicted enzyme with a TIM-barrel fold [Streptococcus thermophilus
LMD-9]
Length = 227
Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 108/228 (47%), Gaps = 15/228 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ Q ++ + A R + V+++AV+K V S+ + G AEN++ +
Sbjct: 1 MTIEENKNDVYQAVKRACEKANRSSEEVNIIAVTKYVSSEIAEELVETGIKHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+K +D+ IG+LQ KV ++++L D + K A + +
Sbjct: 61 FLDKYQTLKK-YDLTWHLIGTLQRRKVKDVINLVDYFHALDSVKLAEEIQKRA---DHTI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G P + + + ++ + GLM + P N + F
Sbjct: 117 NCFLQVNVSGEESKHGFSPEELDTVLNQIKNLDKICIVGLMTMAPIDANTQELDKIFAET 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E+ + + +LSMGM+RD+++AI +G+T VRIGS F E
Sbjct: 177 NELRQSIQDKKLKNVPCDQLSMGMSRDYDMAIQNGSTFVRIGSAFFKE 224
>gi|297544859|ref|YP_003677161.1| alanine racemase domain-containing protein [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842634|gb|ADH61150.1| alanine racemase domain protein [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 202
Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats.
Identities = 63/199 (31%), Positives = 101/199 (50%), Gaps = 12/199 (6%)
Query: 32 AVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV 91
A +K + I+ A++CG ENK+QE +K+ L++E V FIG LQ NKV I+
Sbjct: 2 AATKTFGVETIKEAIACGITDIGENKVQELNEKYPYLKEE--VNFHFIGHLQRNKVKYII 59
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
+I ++ K A + +++ + +++N G E K GI P +FV +
Sbjct: 60 DKVKLIHSLDSIKLAEEIDKRAKQKNLIIDCLVEINIGGEESKYGISPEGMHNFVKEIEK 119
Query: 152 KYQLNVEGLMCIPPAM--GNPKPHFYLLSEIARECK--------LTKLSMGMTRDFELAI 201
+ + GLM I P + +P+F + E+ E K + LSMGM+ D+ +A+
Sbjct: 120 YDNIRIRGLMTIAPYLPPEEVRPYFRKMKELFEELKEIKQHNVEVEFLSMGMSNDYWVAV 179
Query: 202 ASGATSVRIGSGIFGERPC 220
GA VRIG+ IFG+R
Sbjct: 180 EEGANIVRIGTSIFGQRQY 198
>gi|218295591|ref|ZP_03496387.1| alanine racemase domain protein [Thermus aquaticus Y51MC23]
gi|218243750|gb|EED10277.1| alanine racemase domain protein [Thermus aquaticus Y51MC23]
Length = 211
Score = 240 bits (614), Expect = 8e-62, Method: Composition-based stats.
Identities = 71/218 (32%), Positives = 103/218 (47%), Gaps = 12/218 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQ 59
MSL ++I + A R V LVAV+K ++IR L G E+++Q
Sbjct: 1 MSLPE----VLERIALACQRAGRDPKEVRLVAVTKGRSVEEIRERVLRYGAFPLGESRVQ 56
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA KK L+ E +G LQ NK F +I ++ + A L K
Sbjct: 57 EALKKMELLQAE----WHLVGPLQRNKAK-FAPRFHLIHSLDSLRLAEALEGVGAKAGMR 111
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP--AMGNPKPHFYLL 177
L V ++VN G E QK G + + + + R+ L V G M +PP G +P F L
Sbjct: 112 LRVLVEVNLGREPQKHGFLEEELPEALARVREMPHLEVLGFMTVPPMGPEGVVRPIFRRL 171
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
S +A L + SMGM++D+E A+ GAT VR+G +F
Sbjct: 172 SLLADRFGLPERSMGMSQDYEWAVEEGATMVRVGRALF 209
>gi|268611658|ref|ZP_06145385.1| alanine racemase domain protein [Ruminococcus flavefaciens FD-1]
Length = 240
Score = 240 bits (614), Expect = 9e-62, Method: Composition-based stats.
Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 11/230 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N Q I+ + + V ++AV+K V ++ + G + EN++QE
Sbjct: 9 TVKNNFSTITQNIKEAFDKYRNDGSKVDIMAVTKTVPAEVVNWIFDWGMDLMGENRVQEY 68
Query: 62 KKK----WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
K + ++ FIG LQ+NKV I++ D+I++V K A + +
Sbjct: 69 LSKKDLYSASTKSGDPPRIHFIGHLQTNKVKYIINEMDMIQSVDSVKLAHEIDRLAKANN 128
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP------K 171
+ + + +VN G E KSGI P++ ++ + + V GLM IPP +
Sbjct: 129 KVMDILCEVNIGGEESKSGIAPDKLEELLEAAASMENIRVRGLMTIPPPTDSDIFLGRMG 188
Query: 172 PHFYLLSEIARE-CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L + RE + LSMGMT D+ A+ G+T VRIGSG+FG R
Sbjct: 189 ELFNKLKDEKRENISMDILSMGMTHDYIDAVKYGSTLVRIGSGLFGARNY 238
>gi|320161247|ref|YP_004174471.1| hypothetical protein ANT_18450 [Anaerolinea thermophila UNI-1]
gi|319995100|dbj|BAJ63871.1| hypothetical protein ANT_18450 [Anaerolinea thermophila UNI-1]
Length = 244
Score = 240 bits (614), Expect = 9e-62, Method: Composition-based stats.
Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 16/236 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + ++++ SA R ++ ++ V+K + ++ ++ G +F EN +EA
Sbjct: 8 IRERYLRVEEQVAQSAFEVGRDPKAIRILVVTKTQPLEVVKASIEAGITLFGENYPEEAL 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + L+ + ++ IG LQS K +V F V+ET+ R + A L+ +R LP
Sbjct: 68 PKILALQSQPGIEWHMIGHLQSRKARIVVEHFSVMETIDRVEIAEKLNRFAQGANRVLPA 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDF------VILCRQKYQLNVEGLMCIPPA---MGNPKPH 173
+++N E K G+ + F + L+++GLM +PP M +P+
Sbjct: 128 MLELNVSGEESKFGLPAWDDQTFTSMLGAIEKVVSLPNLSIKGLMTMPPLFEKMEESRPY 187
Query: 174 FYLLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
F L +I + +LSMG + DF +A+ GAT +RIG+ I G R +T
Sbjct: 188 FVKLRKIQDSLRKIFPQVCWDELSMGTSADFPVAVQEGATIIRIGTAILGPRRQKT 243
>gi|282902034|ref|ZP_06309932.1| protein of unknown function UPF0001 [Cylindrospermopsis raciborskii
CS-505]
gi|281193121|gb|EFA68120.1| protein of unknown function UPF0001 [Cylindrospermopsis raciborskii
CS-505]
Length = 222
Score = 240 bits (614), Expect = 9e-62, Method: Composition-based stats.
Identities = 73/229 (31%), Positives = 112/229 (48%), Gaps = 21/229 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ + + ++ SV L+AVSK V ++ +R A G F E+++QEA
Sbjct: 4 SIAERVTIIRAQL----------PPSVRLIAVSKQVSTQLMREAYGAGIRDFGESRIQEA 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K I L+ D+ FIG LQSNK + V LF I +V A L L
Sbjct: 54 ASKQIELQDLPDITWHFIGHLQSNKAKKAVELFSWIHSVDNLHIAERLHTIAQTMGTNLY 113
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS--- 178
+QV + QKSG Q + Q L ++GLM IPP + ++ +
Sbjct: 114 SCLQVKILPDPQKSGWTVPQLLAELPFLSQYQSLQIQGLMTIPPWGLKEEQILHVFNHTY 173
Query: 179 EIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+A+E ++ +LSMGM+ D+ELA+ +GAT VR+G+ +FG RP
Sbjct: 174 NLAQEIASQKWANIEMRELSMGMSGDYELAVKAGATMVRLGTILFGNRP 222
>gi|114051511|ref|NP_001040304.1| proline synthetase co-transcribed bacterial-like protein [Bombyx
mori]
gi|87248205|gb|ABD36155.1| proline synthetase co-transcribed bacterial-like protein [Bombyx
mori]
Length = 262
Score = 240 bits (614), Expect = 9e-62, Method: Composition-based stats.
Identities = 84/241 (34%), Positives = 121/241 (50%), Gaps = 27/241 (11%)
Query: 7 LQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L+ +IE + +A+R KD + LVAVSK+ + I A + GQ F EN + E
Sbjct: 23 LKTVLSQIEIA--VARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELS 80
Query: 63 KKWIP---LRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEM---I 114
K L K D++ FIG LQ+NK+++++ ++ETV EK A L+ +
Sbjct: 81 DKASDPLILEKCKDIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEKLADNLNKQWLKYR 140
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN---- 169
K+ L V +QVNT E KSG+ P +T V L+ +GLM I +
Sbjct: 141 KEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILENCPNLDFQGLMTIGQYDYDITKG 200
Query: 170 PKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
P P + L E+ + L +LSMGM+ DF AI GAT+VR+GS IFG RP +
Sbjct: 201 PNPDYLCLIKCRQEVCEKLNLDIKDVELSMGMSSDFAHAIELGATTVRVGSTIFGARPPK 260
Query: 222 T 222
Sbjct: 261 N 261
>gi|94313040|ref|YP_586249.1| hypothetical protein Rmet_4113 [Cupriavidus metallidurans CH34]
gi|93356892|gb|ABF10980.1| conserved hypothetical protein [Cupriavidus metallidurans CH34]
Length = 286
Score = 240 bits (614), Expect = 9e-62, Method: Composition-based stats.
Identities = 67/212 (31%), Positives = 92/212 (43%), Gaps = 11/212 (5%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
R V L+ VSK IR+A + G + ENK QEA +KW L D+Q
Sbjct: 46 CHRVGRDPAGVRLLPVSKAKPEASIRLAHAAGCRLLGENKPQEAYRKWEALADLEDLQWS 105
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
IG LQ+NK + + + A L + + R L V++QVNT E K G+
Sbjct: 106 VIGHLQTNKAKLAARFATEFQALDSLRVAEALDRRLQIEGRALDVFVQVNTSGEASKFGL 165
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-----------SEIARECKL 186
P++ F+ L V GLM + + + L
Sbjct: 166 HPDEVPGFLRALPAFSGLRVRGLMTLALLSAESERVRQCFVLLRELRERLRQDAPVGIGL 225
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 226 DELSMGMSGDFEIAIEEGATVVRVGQAIFGAR 257
>gi|194746150|ref|XP_001955547.1| GF16195 [Drosophila ananassae]
gi|190628584|gb|EDV44108.1| GF16195 [Drosophila ananassae]
Length = 249
Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats.
Identities = 74/249 (29%), Positives = 118/249 (47%), Gaps = 32/249 (12%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVS----LVAVSKMVDSKKIRVALSCGQVIFAENK 57
+ LQ ++I+ +L R +D + LVAVSK + + A GQ F EN
Sbjct: 5 DIKGGLQNVWKRIDE--VLLHRSQDIKTARPVLVAVSKTKPADAVIEAYQAGQRDFGENY 62
Query: 58 LQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLE 112
+QE ++K + + D++ FIG +QSNK++++ V +I+TV +K A+ L
Sbjct: 63 VQELEEKSRHPDIVAQCPDIRWHFIGHMQSNKINKVLAVPNLYMIQTVDSQKLATKLDAA 122
Query: 113 MIK----QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAM 167
K + L V IQ+NT E KSGI P + + L + G+M I
Sbjct: 123 WSKVQPPKDEPLKVLIQINTSGEDVKSGIEPKEAPALFEFIKSNLKHLKLMGIMTIGAYG 182
Query: 168 GN----PKPHFYLLSEIARECKLTK----------LSMGMTRDFELAIASGATSVRIGSG 213
+ P P F L ++ R + + +SMGM+ D++ AI G+T VR+G+
Sbjct: 183 FDYSNGPNPDFVSLMQVHRS--ICEGNSLAPESVLVSMGMSNDYDRAIEMGSTVVRVGTS 240
Query: 214 IFGERPCQT 222
IFG R +
Sbjct: 241 IFGYRAAKA 249
>gi|254831727|ref|ZP_05236382.1| hypothetical protein Lmon1_10248 [Listeria monocytogenes 10403S]
Length = 229
Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 104/225 (46%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE+ + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIEHVCEESNRQSEDVTLVAVTKTIDVTGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + L + D+ +IGSLQ+ KV +++ D + ++ R A + K +
Sbjct: 61 FLEKTVELADKDDICWHYIGSLQTRKVKDVLPQIDYLHSLDRSSLAKEIEKRATK---PV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-NPKPH--FYLL 177
++QVN E K G + F+ + + GLM + P + + H F+ L
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQE-ANFTFIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGI 214
++ +E T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDYGIAITEGATFIRVGRAL 221
>gi|291296085|ref|YP_003507483.1| alanine racemase domain-containing protein [Meiothermus ruber DSM
1279]
gi|290471044|gb|ADD28463.1| alanine racemase domain protein [Meiothermus ruber DSM 1279]
Length = 214
Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats.
Identities = 69/213 (32%), Positives = 103/213 (48%), Gaps = 9/213 (4%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKW 65
L ++IE + R V LVAV+K +IR L G E+++QEA K
Sbjct: 3 LPGVLERIEKACGRVGRDPKGVRLVAVTKEHTVAEIREQVLRYGHFPLGESRIQEALPKM 62
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L E FIG LQ NK V F++I ++ + A ++ + ++Q + V ++
Sbjct: 63 GELEAE----WHFIGPLQRNKAKFAVR-FELIHSIDSLRLAEAVARKALEQGKVQRVLLE 117
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
+N G E QK G + + + + L VEGLM + P P +P F LS +A
Sbjct: 118 LNLGREPQKHGFLEEELPQAIAQIQALEGLRVEGLMTVAPYTDTPETVRPIFAQLSRLAD 177
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L + SMGM+ D E+A+ GAT VR+G IF
Sbjct: 178 RYGLPERSMGMSGDLEVAVEEGATLVRVGRAIF 210
>gi|301306560|ref|ZP_07212622.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 124-1]
gi|300838178|gb|EFK65938.1| pyridoxal phosphate enzyme, YggS family [Escherichia coli MS 124-1]
Length = 220
Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats.
Identities = 63/197 (31%), Positives = 92/197 (46%), Gaps = 10/197 (5%)
Query: 35 KMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVS 92
K + I A+ GQ F EN +QE K ++ ++ FIG LQSNK +
Sbjct: 22 KQKPASAIAEAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAE 81
Query: 93 LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK 152
FD T+ R + A+ L+ + + L V IQ+N E KSGI + + +
Sbjct: 82 HFDWCHTIDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAEL 141
Query: 153 YQLNVEGLMCIPPAMGNPKPHFYLLSEIA--------RECKLTKLSMGMTRDFELAIASG 204
+L + GLM IP F + ++A R + LS+GM+ D E AIA+G
Sbjct: 142 PRLRLRGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAG 201
Query: 205 ATSVRIGSGIFGERPCQ 221
+T VRIG+ IFG R
Sbjct: 202 STMVRIGTAIFGARDYS 218
>gi|325919600|ref|ZP_08181612.1| pyridoxal phosphate enzyme, YggS family [Xanthomonas gardneri ATCC
19865]
gi|325549936|gb|EGD20778.1| pyridoxal phosphate enzyme, YggS family [Xanthomonas gardneri ATCC
19865]
Length = 230
Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats.
Identities = 76/226 (33%), Positives = 103/226 (45%), Gaps = 12/226 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ + LQ I +A + V L+AVSK + + V + GQ F EN +QE
Sbjct: 1 MT-ASSLQQILDAIHAAATQ--QAHTDVRLLAVSKTRPADALAVLAAQGQRAFGENYVQE 57
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+ K L ++ IG LQSNK FD ++TV R K LL+ L
Sbjct: 58 AQAKIAELHA-LGLEWHLIGHLQSNKAELASQCFDWVQTVDRAKLIPLLARYRPDDRAPL 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLL 177
V IQVN E K G P + +L + GLM IP P F +
Sbjct: 117 NVLIQVNIDDEDSKHGCAPEAIDALARDIALQPRLQLRGLMAIPAPFPEQARRAAAFTRM 176
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + K + LSMGM+ DF AIA+GAT VR+G+ +FGER
Sbjct: 177 QALFEDLKGRYPQVDTLSMGMSSDFAEAIAAGATMVRVGTALFGER 222
>gi|292669562|ref|ZP_06602988.1| cell division protein YlmE [Selenomonas noxia ATCC 43541]
gi|292648771|gb|EFF66743.1| cell division protein YlmE [Selenomonas noxia ATCC 43541]
Length = 239
Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats.
Identities = 63/204 (30%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V L+AV+K + ++ A+ G + EN++QEA K L + V+ IG LQ+NK
Sbjct: 34 VELIAVTKNHPVEAMQKAIDAGVMNIGENRVQEALSKAGTLARA--VKWHLIGHLQTNKA 91
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
+ V FD+I +V + A + + + V +QVN E KSG+ + +
Sbjct: 92 KQAVRQFDLIHSVDSVRLAQEIDKAAERFGKVQNVLVQVNLAREESKSGVYREDLDELLA 151
Query: 148 LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK--------LTKLSMGMTRD 196
+ + ++G MCI P N +P F + E+ R+ K + LSMGMT D
Sbjct: 152 AIDELCSVRLQGFMCIAPNYENVEQCRPLFREMYELFRQMKAAGPRTADIRYLSMGMTHD 211
Query: 197 FELAIASGATSVRIGSGIFGERPC 220
+ +A+ GA VR+G+ IFG R
Sbjct: 212 YGIAVEEGANLVRVGTAIFGARQY 235
>gi|258646837|ref|ZP_05734306.1| pyridoxal phosphate enzyme, YggS family [Dialister invisus DSM
15470]
gi|260404274|gb|EEW97821.1| pyridoxal phosphate enzyme, YggS family [Dialister invisus DSM
15470]
Length = 236
Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats.
Identities = 74/234 (31%), Positives = 113/234 (48%), Gaps = 16/234 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRP-KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
MS + KL+V K++I +A A+ P + V+LVAV+K + + L G EN++
Sbjct: 1 MSAIEEKLEVVKKRI--AAAKARSPYRQDVTLVAVTKFHPLEDMEEVLRLGVKEVGENRV 58
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QE + K L+ V G LQ NKV + V+ D+I++V + + + +
Sbjct: 59 QELEDKRSRLK--MPVVWNLQGHLQKNKVKKAVAAADLIQSVDSVEIMEEIDKRAGQAGK 116
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFY 175
V ++ N E K G+ P + + V+GLMC+ P + + +P F
Sbjct: 117 VQDVLLEFNISGETSKYGLPPESLDEAAAKAGMLPHIRVKGLMCMAPMVEDVEMTRPVFR 176
Query: 176 LLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
E+ K ++ LSMGMTRDFE AI GAT VR+G+ IFGER
Sbjct: 177 RAHEMWEVLKTYFPKGQVSVLSMGMTRDFETAIEEGATMVRVGTAIFGERNYAN 230
>gi|33597453|ref|NP_885096.1| hypothetical protein BPP2901 [Bordetella parapertussis 12822]
gi|33573880|emb|CAE38194.1| conserved hypothetical protein [Bordetella parapertussis]
Length = 267
Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats.
Identities = 68/222 (30%), Positives = 105/222 (47%), Gaps = 9/222 (4%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L + ++ + A R V L+ VSK VD +IR++ + G ENK+QEA +K
Sbjct: 27 HNLAAVRARMAAACQRAGRDPAGVRLLPVSKTVDEARIRMSYAAGCRELGENKVQEAYRK 86
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
W + D++ IG LQ+NK + + + + A L + + R L VY+
Sbjct: 87 WEAMADLADLRWSVIGHLQTNKAKLVARFAAEFQALDSVRLAEALERRLQAEGRALDVYV 146
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC 184
QVNT E K G+ P++ F+ L V GLM + + L +
Sbjct: 147 QVNTSGEASKYGLHPDEAAAFIRQLPSYGALRVRGLMTLAVLSADAARV-RQLRTLRDRL 205
Query: 185 K--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L +LSMGM+ D+E+AI GAT VR+G I+G R
Sbjct: 206 RQEAPAGVSLDELSMGMSGDYEIAIEEGATVVRVGQAIYGAR 247
>gi|297566665|ref|YP_003685637.1| alanine racemase domain-containing protein [Meiothermus silvanus
DSM 9946]
gi|296851114|gb|ADH64129.1| alanine racemase domain protein [Meiothermus silvanus DSM 9946]
Length = 212
Score = 240 bits (613), Expect = 1e-61, Method: Composition-based stats.
Identities = 70/214 (32%), Positives = 105/214 (49%), Gaps = 8/214 (3%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKK 64
L ++I+ +A A R ++ LVAV+K ++I+ L G E+++QEA K
Sbjct: 2 ALPQVLERIQAAARRAGRDPGAIRLVAVTKGHPPQEIQDKVLRYGHFPLGESRVQEALPK 61
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
++ IG LQ NKV S F +I ++ K A +S + + V +
Sbjct: 62 MAAFP---GLEWHLIGPLQRNKVKFC-SGFRLIHSLDSLKLAEYMSKKAREMGHTFRVLV 117
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA 181
+VN E QK G + +Q + R+ L V+GLM I P P +P F LS +A
Sbjct: 118 EVNLSLEPQKHGFLESQLTHALPRIREMEGLEVQGLMTIAPYTEKPQTVRPIFAQLSRLA 177
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L + SMGM+ DFE+A+ GAT VRIG +F
Sbjct: 178 DRFDLPERSMGMSGDFEVAVEEGATLVRIGRALF 211
>gi|145340986|ref|XP_001415597.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575820|gb|ABO93889.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 237
Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats.
Identities = 71/212 (33%), Positives = 102/212 (48%), Gaps = 18/212 (8%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ +V LVAVSK ++++ G F EN +QE +K + + D + FIG LQS
Sbjct: 27 QGAVRLVAVSKTKPVEQLKECYDAGHRDFGENYVQEMIEKVPRMPE--DTRWHFIGHLQS 84
Query: 85 NKVSEIV---SLFDVIETVSREKTASLLSLEMIKQSRF--LPVYIQVNTGYEIQKSGIMP 139
NK ++ ++ETV K A+ L+ + + R L V +QVNT E K G+ P
Sbjct: 85 NKCKALLEACPRLAMLETVDSAKLANKLN-AAVPEGRVDALRVLVQVNTSGEASKHGVEP 143
Query: 140 NQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPH-FYLLSEIARE----CKLT----KL 189
+ +L GLM I KP F L + E ++ +L
Sbjct: 144 GDCVTLAKHIVSECPRLKFAGLMTIGMPDYTSKPENFETLRKCREEVCAALGMSESECEL 203
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
SMGM+ DFE AIA G+T+VR+GS IFG R
Sbjct: 204 SMGMSGDFEAAIAMGSTNVRVGSTIFGARDYS 235
>gi|331269356|ref|YP_004395848.1| hypothetical protein CbC4_1171 [Clostridium botulinum BKT015925]
gi|329125906|gb|AEB75851.1| conserved hypothetical protein [Clostridium botulinum BKT015925]
Length = 220
Score = 239 bits (612), Expect = 1e-61, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 102/228 (44%), Gaps = 22/228 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + K+ I + +L+AVSK +++ C F ENK+QE
Sbjct: 1 MSIKENVDKIKKSI----------PEGTTLIAVSKTRLLEELEEVYKCDIRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K DV IG LQ+NKV IV +I ++ + + +
Sbjct: 51 LIEKIDNFHD--DVHWHLIGHLQTNKVKYIVGKVHLIHSLDNIRLLKEIEKRYSMCDKVA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP--AMGNPKPHFYLLS 178
V IQ+N G + KSG++ +D + C + + V+G+M + P + +F +
Sbjct: 109 NVLIQINIGRDPNKSGVLLEDLQDLINECEKCKYVKVKGIMTVIPKGNQDTNREYFKEMK 168
Query: 179 EI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I + +SMGMT D+++A+ G+ VRIG GIFG+R
Sbjct: 169 NIYNFLSKNKYENVNMEFISMGMTGDYKIALEEGSNMVRIGEGIFGKR 216
>gi|116873461|ref|YP_850242.1| hypothetical protein lwe2045 [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742339|emb|CAK21463.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 229
Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats.
Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ L+ +I+ + + R ++ V+LVAV+K +D+ I + G F EN+
Sbjct: 1 MTKQANLEQVTAQIKRACEESNRQQEDVTLVAVTKTIDTAGITELYNLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K I L + D+ +IGSLQ+ KV +++ D + ++ R A + K +
Sbjct: 61 FLEKTIELADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDRSSLAKEIEKRATK---PV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-NPKPH--FYLL 177
++QVN E K G + F+ + + GLM + P + + H F+ L
Sbjct: 118 KCFLQVNISGEESKHGFSKEEALSFLQE-ADFNFIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGI 214
++ +E T+LSMGMT D+ +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDYGIAITEGATFIRVGRAL 221
>gi|329767996|ref|ZP_08259507.1| YggS family pyridoxal phosphate enzyme [Gemella haemolysans M341]
gi|328838481|gb|EGF88089.1| YggS family pyridoxal phosphate enzyme [Gemella haemolysans M341]
Length = 225
Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats.
Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 23/230 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ- 59
M++ + ++I + R D V L+AV+K V ++ A+ FAEN+ Q
Sbjct: 1 MNVRENFETITKEIAETCEKVGRNADEVKLIAVTKYVTDARVEEAIEAKITDFAENRPQN 60
Query: 60 --EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K K+ D IGSLQ+ KV ++++ D + R+ A + K+
Sbjct: 61 YVERKSKYS------DKAWHLIGSLQTRKVRDVINEVDYFHALDRDSLAKEIEKRAEKE- 113
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
+ ++QVN E K G+ ++T DF+ Q ++ V GLM + P + + + F
Sbjct: 114 --INCFVQVNVSGEESKHGLTADETVDFIKSLEQYSKIKVVGLMTMAPFVDDEDVLRNCF 171
Query: 175 YLLSEIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIFG 216
L ++ E K + LSMGM+ D++ AI GAT +R+G+ + G
Sbjct: 172 RKLRQLRDEVKELELPYAPCEFLSMGMSNDYKTAIEEGATHIRVGTALVG 221
>gi|254443117|ref|ZP_05056593.1| conserved hypothetical protein TIGR00044 [Verrucomicrobiae
bacterium DG1235]
gi|198257425|gb|EDY81733.1| conserved hypothetical protein TIGR00044 [Verrucomicrobiae
bacterium DG1235]
Length = 232
Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats.
Identities = 72/224 (32%), Positives = 102/224 (45%), Gaps = 11/224 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L+ +KI S A R D+V L+ V+K R A G + EN++QEA
Sbjct: 9 QANLKEVVEKIHASCEKAGRAVDTVKLLPVTKNHPVDAARYAWDAGLLSVGENRVQEALG 68
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K + + IG LQSNK ++ F ++TV R K A+ L + R LPV
Sbjct: 69 KMDDVDSR--LCWELIGPLQSNKAKKVAERFGRVQTVDRVKIATALDRYAAEAGRRLPVL 126
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEI 180
+Q+N G + KSG + + L V+GLM I P + + F L E
Sbjct: 127 LQINAGRDPAKSGAELEDAAALLEALLKCESLQVDGLMTIAPLSEDADVARRCFARLREC 186
Query: 181 AREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +LSMGM+ D E AI G+T VR+G+ +FG R
Sbjct: 187 RDGLSKSFGIDLLELSMGMSGDMEEAILEGSTMVRVGTALFGSR 230
>gi|195341465|ref|XP_002037330.1| GM12173 [Drosophila sechellia]
gi|194131446|gb|EDW53489.1| GM12173 [Drosophila sechellia]
Length = 254
Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats.
Identities = 80/248 (32%), Positives = 115/248 (46%), Gaps = 30/248 (12%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVS-----LVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ LQ ++I+ +L +R V LVAVSK ++ + A GQ F EN
Sbjct: 10 DVKAGLQHVLKRIDE--VLVQR-PKEVQAARPLLVAVSKTKPAEAVIEAYEDGQRDFGEN 66
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSL 111
+QE ++K L K D++ FIG +QSNK+++I V +I+TV EK A+ L
Sbjct: 67 YVQELEEKSRHPDILAKCPDIRWHFIGHMQSNKINKILSVPNLHMIQTVDSEKLATKLDA 126
Query: 112 EMIKQ----SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPA 166
K+ L V IQ+NT E KSGI + LN+ G+M I
Sbjct: 127 AWSKRQPTPEEPLQVLIQINTSGEDVKSGIEAKDAPALYQYIKSNLKHLNLMGIMTIGAF 186
Query: 167 MGN----PKPHFYLLSEIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGI 214
+ P P F L ++ R +SMGM+ DF+ AI G+T VR+GS I
Sbjct: 187 GFDYASGPNPDFVSLMQVHRTICEAHSLAPDSVLVSMGMSHDFDKAIEMGSTVVRVGSSI 246
Query: 215 FGERPCQT 222
FG R +
Sbjct: 247 FGHRASKA 254
>gi|322372689|ref|ZP_08047225.1| pyridoxal phosphate enzyme, YggS family [Streptococcus sp. C150]
gi|321277731|gb|EFX54800.1| pyridoxal phosphate enzyme, YggS family [Streptococcus sp. C150]
Length = 227
Score = 239 bits (612), Expect = 2e-61, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 15/228 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ Q ++ + A R D V+++AV+K V S + G AEN++ +
Sbjct: 1 MTIEENKNNVYQAVKAACEKANRSSDEVNIIAVTKYVSSDIAEELVKTGIKHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L +D+ IG+LQ KV ++++L D + K A + + +
Sbjct: 61 FLDKYQAL-NNYDLTWHLIGTLQRRKVKDVINLVDYFHALDSVKLAEEIQKRA---NHTI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G P + + + + + GLM + P + + F
Sbjct: 117 KCFLQVNVSGEESKHGFSPEELDTVLDQIKNLDNICIVGLMTMAPIDADNQELDEIFSQT 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E+ + + +LSMGM+RDF+ AI +G+T VRIGS F E
Sbjct: 177 NELRKSIQEKKIKNVPCDQLSMGMSRDFDEAIQNGSTFVRIGSAFFKE 224
>gi|325270978|ref|ZP_08137565.1| proline synthetase associated protein [Prevotella multiformis DSM
16608]
gi|324986775|gb|EGC18771.1| proline synthetase associated protein [Prevotella multiformis DSM
16608]
Length = 223
Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats.
Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 26/231 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L D V LVA+SK ++ I A GQ +F E++ QE
Sbjct: 3 DVAKNLHEVL----------GTLPDGVKLVAISKFHPAEYIEAAYREGQRLFGESQEQEL 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L K D++ FIG LQ+NKV I +IE V K ++ + + R +
Sbjct: 53 ARKVECLPK--DIEWHFIGHLQTNKVKYIAPYISMIEAVDSLKLLKEINKQAARHGRVIR 110
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
V ++++ E K G P ++ + R +++ GLM + + + + L
Sbjct: 111 VLLELHIAEEESKYGFSPAACRELLENGEWRALRNVHISGLMMMASNVEDRSQIRREMTL 170
Query: 177 LSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+++ E K + S GM+ D+++A+ +T VR+G+ IFG R
Sbjct: 171 AADLFDELKAKYFADDPEFKERSWGMSHDYDIAVECRSTMVRVGTAIFGPR 221
>gi|297624874|ref|YP_003706308.1| alanine racemase domain-containing protein [Truepera radiovictrix
DSM 17093]
gi|297166054|gb|ADI15765.1| alanine racemase domain protein [Truepera radiovictrix DSM 17093]
Length = 237
Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats.
Identities = 68/216 (31%), Positives = 110/216 (50%), Gaps = 6/216 (2%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKK 63
+ L K ++E + A R +V+LVAV+K ++++ L G + E+++QE +
Sbjct: 2 SALDAVKTRLERACARAGRDPRAVTLVAVTKGRSAEEVEAQLLGRGHLTLGESRVQEWRS 61
Query: 64 KWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + W + FIG+LQ+NKV F + +++ + A L +++ V
Sbjct: 62 KAARLAERGWAPEWHFIGNLQTNKVKYCAP-FYALHSLNSRRLAEALEAFGARRAHRFRV 120
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+++VN E K G+ + + V + L V GLM I P +P +P F L E
Sbjct: 121 FVEVNVAGEASKQGVPLAEAEALVRYAQGLPHLEVLGLMTIAPYSHDPEAVRPVFRALRE 180
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ L LSMGM+ DFE+AI GAT VR+GS +F
Sbjct: 181 LRDRLALEALSMGMSGDFEVAIEEGATHVRVGSALF 216
>gi|167037282|ref|YP_001664860.1| alanine racemase domain-containing protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040523|ref|YP_001663508.1| alanine racemase domain-containing protein [Thermoanaerobacter sp.
X514]
gi|256751715|ref|ZP_05492589.1| alanine racemase domain protein [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914570|ref|ZP_07131886.1| alanine racemase domain protein [Thermoanaerobacter sp. X561]
gi|307724194|ref|YP_003903945.1| alanine racemase domain-containing protein [Thermoanaerobacter sp.
X513]
gi|320115698|ref|YP_004185857.1| alanine racemase domain-containing protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166854763|gb|ABY93172.1| alanine racemase domain protein [Thermoanaerobacter sp. X514]
gi|166856116|gb|ABY94524.1| alanine racemase domain protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256749384|gb|EEU62414.1| alanine racemase domain protein [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889505|gb|EFK84651.1| alanine racemase domain protein [Thermoanaerobacter sp. X561]
gi|307581255|gb|ADN54654.1| alanine racemase domain protein [Thermoanaerobacter sp. X513]
gi|319928789|gb|ADV79474.1| alanine racemase domain protein [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 202
Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats.
Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 12/199 (6%)
Query: 32 AVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV 91
A +K + I+ A++CG ENK+QE +K+ L+ E V+ FIG LQ+NKV I+
Sbjct: 2 AATKTFGVETIKEAIACGITDIGENKVQELNEKYPYLKNE--VKFHFIGHLQTNKVKYII 59
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
+I ++ K A + ++S + +++N G E K GI P + +FV +
Sbjct: 60 DKVKLIHSLDSIKLAEEIDKRAKQKSLIIDCLVEINIGGEESKYGIPPEEMHNFVKEMEK 119
Query: 152 KYQLNVEGLMCIPPAM--GNPKPHFYLLSEIARECK--------LTKLSMGMTRDFELAI 201
+ + GLM I P + +P+F + E+ E K + LSMGM+ D+ +A+
Sbjct: 120 YDNIRIRGLMAIAPYLPPEEVRPYFRKMKELFEELKEIKQHNVQVEFLSMGMSNDYWVAV 179
Query: 202 ASGATSVRIGSGIFGERPC 220
GA VRIG+ IFG+R
Sbjct: 180 EEGANIVRIGTSIFGQRQY 198
>gi|118443487|ref|YP_878018.1| hypothetical protein NT01CX_1945 [Clostridium novyi NT]
gi|118133943|gb|ABK60987.1| conserved hypothetical protein [Clostridium novyi NT]
Length = 223
Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats.
Identities = 69/228 (30%), Positives = 107/228 (46%), Gaps = 22/228 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + F+ +I V+L+AVSK +++ A C F ENK+QE
Sbjct: 1 MSIRENVIKFQNEI----------PKDVTLLAVSKTRTLEELEEAYKCNIRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K DV+ IG LQ+NKV IV +I ++ K + +
Sbjct: 51 LIYKFDNFHK--DVRWHLIGHLQTNKVKYIVGKVYLIHSLDSIKLLKEIERRYSIANEIA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK--PHFYLLS 178
V IQ+N G + KSG++ ++ + C + + V+GLM + P + +F +
Sbjct: 109 NVLIQINIGRDPNKSGVLLENLQELIDECEKCKNVKVKGLMTVIPKGNSATNIEYFIEMK 168
Query: 179 EIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+I K+ LSMGMT D++ A+ GA VRIG GIFG+R
Sbjct: 169 KIYDFLSNKLYNNVKMEFLSMGMTGDYKEALKEGANIVRIGEGIFGKR 216
>gi|168186162|ref|ZP_02620797.1| conserved hypothetical protein [Clostridium botulinum C str.
Eklund]
gi|169295770|gb|EDS77903.1| conserved hypothetical protein [Clostridium botulinum C str.
Eklund]
Length = 223
Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 109/228 (47%), Gaps = 22/228 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + F++++ +V+L+AVSK +++ A C F ENK+QE
Sbjct: 1 MSIKENVIKFQKEL----------PKNVTLLAVSKTRTLEELEEAYKCNIRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ K DV+ IG LQ+NKV IV +I ++ K + +
Sbjct: 51 LTYKFDNFHK--DVRWHLIGHLQTNKVKYIVGKVYLIHSLDNVKLLKEIEKRYSSANEIA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM--GNPKPHFYLLS 178
V IQ+N G + KSG++ +D + C + + V+GLM + P + +F +
Sbjct: 109 NVLIQINIGRDSNKSGVLLENLQDLIDECEKCKNVKVKGLMTVIPKGNHDTNREYFIEMK 168
Query: 179 --------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ K+ +SMGMT D+E A+ G+ VRIG GIFG+R
Sbjct: 169 KTYDFLSNKLYNNVKMEFISMGMTGDYEEALEEGSNIVRIGEGIFGKR 216
>gi|239617209|ref|YP_002940531.1| alanine racemase domain protein [Kosmotoga olearia TBF 19.5.1]
gi|239506040|gb|ACR79527.1| alanine racemase domain protein [Kosmotoga olearia TBF 19.5.1]
Length = 218
Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats.
Identities = 70/229 (30%), Positives = 118/229 (51%), Gaps = 23/229 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ +I D V++VA +K ++I A+ G I EN +QE
Sbjct: 1 MGIKENIKKILSEI----------PDYVTVVAAAKTRTPEEILEAIEAGIEIIGENYVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A+K + + K+ Q IG LQ NKV + V +FD+I+TV K A+ ++ + + +
Sbjct: 51 AQKAFEAVGKK--AQWHMIGHLQKNKVKKAVQIFDMIQTVDSVKIANEINKRAAQFGKVM 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
PV I+VN+G E QK+G++P V + + +EGLM + P + P +P+F L
Sbjct: 109 PVLIEVNSGREEQKAGVLPEDVFRLVEEISKLENIRIEGLMTMGPVVDAPEELRPYFSLT 168
Query: 178 SEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+ ++ LSMGM+ +++AI GA +R+G+ +FG R
Sbjct: 169 RELFENLSREKLPGVEMKWLSMGMSDSYKIAIKEGANMIRLGTILFGPR 217
>gi|289435372|ref|YP_003465244.1| hypothetical protein lse_2011 [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171616|emb|CBH28162.1| conserved hypothetical protein [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 229
Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ L+ ++IE + + R K V+LVAV+K +D+ ++ G F EN+
Sbjct: 1 MTKQANLEKVTKQIELACTESNRDKTDVTLVAVTKTIDATEMTELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L + D+ +IGSLQ+ KV +++ D + ++ R A + K +
Sbjct: 61 FLEKTTQLANKDDICWHYIGSLQTRKVKDVLPKIDYLHSLDRASLAKEIEKRATKL---V 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-NPKPH--FYLL 177
++QVN E K G + F+ + + GLM + P + + H F+ L
Sbjct: 118 KCFLQVNISGEETKHGFSKEEALSFLQE-ADFKYIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGI 214
++ +E T+LSMGMT DF +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDFGIAITEGATFIRVGRAL 221
>gi|294501010|ref|YP_003564710.1| hypothetical protein BMQ_4266 [Bacillus megaterium QM B1551]
gi|294350947|gb|ADE71276.1| conserved hypothetical protein [Bacillus megaterium QM B1551]
Length = 227
Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 16/226 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ L+ +Q I + R ++ V L+AV+K V +K+ A+ G + EN+ +
Sbjct: 4 SVSENLEAVQQTIAEACKKVNRNREDVELIAVTKYVSAKRAAEAVDAGILHLGENRDEGL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ + ++ FIGSLQ+ KV ++ D I ++ R A + +
Sbjct: 64 LEKYESIGEK--ATWHFIGSLQTRKVKNVIDKVDYIHSLDRLSLAKEIDKRAE---HRIK 118
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
++QVN E K G+ F+ + V GLM + P + + F L
Sbjct: 119 CFVQVNVAEEQSKHGLAVEDVIPFIQSLEAFANIQVVGLMTMAPHTDDESTLRSCFKGLK 178
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
++ + T+LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 179 KLQNRIQELNLPYAPCTELSMGMSNDYAIAIEEGATFIRLGTTLVG 224
>gi|320163280|gb|EFW40179.1| alanine racemase [Capsaspora owczarzaki ATCC 30864]
Length = 280
Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats.
Identities = 83/258 (32%), Positives = 117/258 (45%), Gaps = 41/258 (15%)
Query: 2 SLGNKLQVFKQKIENS-AILA-----------------KR---PKDSVSLVAVSKMVDSK 40
++ L+ + ++ + A A R D+V LVAVSK +
Sbjct: 19 AVVAALEAVRGRMSAAVAKRAEKAASSASVSTSASDEHGRVAGEADAVRLVAVSKTKPNA 78
Query: 41 KIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIE 98
++ A GQ F EN +QE K L + D+Q FIG LQSNK S + V+E
Sbjct: 79 LLQAAYGAGQRHFGENYVQELVAKASGLPR--DIQWHFIGHLQSNKASHVAAIPNLFVVE 136
Query: 99 TVSREKTASLLSLEMIKQSR--FLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQL 155
TV K A+ L KQ+R L V++QVNT E KSG + + L
Sbjct: 137 TVDSVKLATALEKACAKQTRDSPLRVFVQVNTSGETSKSGSNAAEAIAVARHIVNECPHL 196
Query: 156 NVEGLMCIPPA-----MGNPKPHFYLLSEIARE--------CKLTKLSMGMTRDFELAIA 202
+ GLM I +P P F LL+EI ++ +LS GM+ DFE AI+
Sbjct: 197 RLCGLMTIGQPGRQCSEASPNPDFLLLNEIRQQTAESLSLRAADLELSFGMSDDFEHAIS 256
Query: 203 SGATSVRIGSGIFGERPC 220
G+T++R+GS IFG R
Sbjct: 257 MGSTNIRVGSTIFGSRSY 274
>gi|221214454|ref|ZP_03587425.1| conserved hypothetical protein TIGR00044 [Burkholderia multivorans
CGD1]
gi|221165711|gb|EED98186.1| conserved hypothetical protein TIGR00044 [Burkholderia multivorans
CGD1]
Length = 232
Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats.
Identities = 78/231 (33%), Positives = 109/231 (47%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L+ ++I ++A A R SVSL+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAVRLESVHRRIADAARAAGRDPASVSLLAVSKTFPADAVRAAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L ++ FIG LQSNK + +D + +V R K A L+ +
Sbjct: 61 ESIDKIDALADLRASLEWHFIGPLQSNKTRAVAERYDWVHSVDRLKIAQRLAEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V +QVN E KSG+ P + + L + GLM IP +
Sbjct: 121 PLNVCVQVNISGEASKSGVAPAEVAEVARAVAALPSLRLRGLMAIPEPAADLDAQRVPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+ GAT VRIG+ IFG R
Sbjct: 181 ALRTLFDALRADGLPLDTLSMGMSADLEAAVLEGATIVRIGTAIFGARDYS 231
>gi|195037419|ref|XP_001990158.1| GH18384 [Drosophila grimshawi]
gi|193894354|gb|EDV93220.1| GH18384 [Drosophila grimshawi]
Length = 249
Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats.
Identities = 74/242 (30%), Positives = 112/242 (46%), Gaps = 28/242 (11%)
Query: 7 LQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
LQ+ ++IE +LA RPK+ LVAVSK ++ + A + GQ F EN +QE
Sbjct: 10 LQLVLKRIET--VLASRPKEIKAGKPLLVAVSKTKPAESVIEAYNAGQRHFGENYVQELV 67
Query: 63 KKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIKQS 117
+K L + D++ IG LQ NK++++ + +I+TV EK A L K
Sbjct: 68 EKSQHPQILAQCPDIKWHLIGHLQGNKINKVLKLPNLHMIQTVDSEKLADKLDAAWSKLE 127
Query: 118 R----FLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN--- 169
L + +QVNT E KSGI + L G+M I +
Sbjct: 128 PPPSEPLRILVQVNTSEEDVKSGIDASAAPSLYQYISSNLKHLQPVGIMTIGAYGFDYSN 187
Query: 170 -PKPHFYLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
P P F L + + + ++SMGM+ D++ AI G+T VR+G+ IFG R
Sbjct: 188 GPNPDFVSLMAVHADICQANALPAEALQVSMGMSNDYDRAIEMGSTIVRVGTAIFGHRAS 247
Query: 221 QT 222
+
Sbjct: 248 KA 249
>gi|295706359|ref|YP_003599434.1| hypothetical protein BMD_4254 [Bacillus megaterium DSM 319]
gi|294804018|gb|ADF41084.1| conserved hypothetical protein [Bacillus megaterium DSM 319]
Length = 227
Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 105/226 (46%), Gaps = 16/226 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ L+ +Q I + R ++ V L+AV+K V +K+ A+ G + EN+ +
Sbjct: 4 SVSENLEAVQQAIAEACKKVNRNREDVELIAVTKYVSTKRAAEAVDAGILHLGENRDEGL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ + ++ FIGSLQ+ KV ++ D I ++ R A + +
Sbjct: 64 LEKYESIGEK--ATWHFIGSLQTRKVKNVIDKVDYIHSLDRVSLAKEIDKRA---GHRIK 118
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
++QVN E K G++ F+ + + V GLM + P + + F L
Sbjct: 119 CFVQVNVAEEQSKHGLVVEDVIPFIKSLEEFTNIQVVGLMTMAPHTDDESTLRSCFQGLK 178
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
++ + T+LSMGM+ D+ +AI GAT +R+G+ + G
Sbjct: 179 KLQSRIQELNLPYAPCTELSMGMSNDYAIAIEEGATFIRLGTTLVG 224
>gi|294053951|ref|YP_003547609.1| alanine racemase domain protein [Coraliomargarita akajimensis DSM
45221]
gi|293613284|gb|ADE53439.1| alanine racemase domain protein [Coraliomargarita akajimensis DSM
45221]
Length = 231
Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats.
Identities = 70/222 (31%), Positives = 106/222 (47%), Gaps = 11/222 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L + +Q+I ++ A+R DSV L+ V+K + A G EN++QEA K
Sbjct: 10 RLGLVQQRIVDACRQAERRVDSVHLLPVTKNHPLDAVLYAARSGLAAVGENRVQEALDKK 69
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
+ V+ IG LQSNK + V FD I++V K L + + + +Q
Sbjct: 70 AKM--TTTVRWELIGHLQSNKAKDAVEQFDRIQSVDSLKLLQRLDRMAAACGKRMSILLQ 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
N G + K G P + V + L ++GLM I P NP K F L +
Sbjct: 128 CNAGEDPNKYGFSPAGLEQAVEVALNCSNLQLDGLMTIAPLTDNPDVAKACFERLRTLRD 187
Query: 183 EC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
C L +LSMGMT D + AIA+G+T +R+G+ ++G R
Sbjct: 188 HCADTFSVALPELSMGMTGDLDSAIAAGSTQIRVGTALYGSR 229
>gi|220906661|ref|YP_002481972.1| alanine racemase domain-containing protein [Cyanothece sp. PCC
7425]
gi|219863272|gb|ACL43611.1| alanine racemase domain protein [Cyanothece sp. PCC 7425]
Length = 228
Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats.
Identities = 69/225 (30%), Positives = 99/225 (44%), Gaps = 23/225 (10%)
Query: 16 NSAILAKRP-------KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
+ + R DSV L+AVSK V IR A + G F EN++QEA K L
Sbjct: 4 QACSIVDRIIRIRTTLPDSVRLIAVSKGVSGDAIRQAYAAGVRDFGENRVQEAIAKQDEL 63
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
+ D+ IG LQSNK + FD I +V K A L+ + + V +QV
Sbjct: 64 QDLNDIHWHLIGHLQSNKARIALQHFDWIHSVDSLKLAQHLN-HLSQDLSPPQVLLQVKL 122
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIARECK 185
+ K G P + Q L V GLM I P + F ++ + +
Sbjct: 123 RNDPNKYGWNPVDLLQDLPQLAQCSHLQVAGLMVILPLGLSETERLSTFGQARQLQLQIQ 182
Query: 186 ------------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+T+LSMGM+ D+ A+ +G+T VR+G +FGER
Sbjct: 183 AQMREQQWQNMPMTELSMGMSDDYLQAVKAGSTMVRLGRILFGER 227
>gi|312863618|ref|ZP_07723856.1| pyridoxal phosphate enzyme, YggS family [Streptococcus vestibularis
F0396]
gi|322517033|ref|ZP_08069921.1| cell division protein YlmE [Streptococcus vestibularis ATCC 49124]
gi|311101154|gb|EFQ59359.1| pyridoxal phosphate enzyme, YggS family [Streptococcus vestibularis
F0396]
gi|322124401|gb|EFX95901.1| cell division protein YlmE [Streptococcus vestibularis ATCC 49124]
Length = 228
Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats.
Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 15/228 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + Q ++ + A R + V+++AV+K V S+ + G AEN++ +
Sbjct: 2 MTIEDNKNGIYQAVKKACEKANRSSEEVNIIAVTKYVSSEIAEELVETGIKHIAENRVDK 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+K +D+ IGSLQ KV ++++L D + K A + +
Sbjct: 62 FLDKYQALKK-YDLTWHLIGSLQRRKVKDVINLVDYFHALDSVKLAEEIQKRA---DHTI 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G P + + ++ + GLM + P N + F
Sbjct: 118 NCFLQVNVSGEESKHGFPPEELDTVLNHIENLDKICIVGLMTMAPIDANAQELDKIFAET 177
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E+ + + +LSMGM+RD+++AI +G+T VRIGS F E
Sbjct: 178 NELRQSIQDKKIKNVPCDQLSMGMSRDYDMAIQNGSTFVRIGSAFFKE 225
>gi|56964112|ref|YP_175843.1| hypothetical protein ABC2347 [Bacillus clausii KSM-K16]
gi|56910355|dbj|BAD64882.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 229
Score = 239 bits (610), Expect = 3e-61, Method: Composition-based stats.
Identities = 62/227 (27%), Positives = 113/227 (49%), Gaps = 15/227 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + K ++ + + R D V ++AV+K V + A+ G EN+++ A
Sbjct: 4 NVAENVANIKMRVRQACERSGRAIDDVRIIAVTKYVSVATAKQAVEAGIADIGENRIEGA 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K + + +L F+GSLQS KV IV++ I ++ R A + + + + +
Sbjct: 64 LEKAAAIGQ---ARLHFVGSLQSRKVKNIVNVVSCIHSLDRLSLAKEIDKRL-EPGKTID 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLS 178
++QVN E K+G+ P++ + F+ + V GLM + P + +P F L
Sbjct: 120 CFVQVNVSGEQSKNGLSPDEVRPFINELAAYPAVRVIGLMTMAPFEQDAERTRPIFSKLR 179
Query: 179 EIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E+ + K +LSMGM+ DFE+AI GAT +R+G+ + G+
Sbjct: 180 ELRDQIKADKLSSAPCTELSMGMSNDFEVAIEEGATFIRLGTSLVGK 226
>gi|195452638|ref|XP_002073440.1| GK13144 [Drosophila willistoni]
gi|194169525|gb|EDW84426.1| GK13144 [Drosophila willistoni]
Length = 249
Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats.
Identities = 79/247 (31%), Positives = 116/247 (46%), Gaps = 28/247 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
+ LQ+ ++I+ +LA RPK+ LVAVSK + I A GQ F EN
Sbjct: 5 DVKAGLQLALKRIDE--VLANRPKEIQTPKPILVAVSKTKPPEAIIEAYEAGQRDFGENY 62
Query: 58 LQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLE 112
+QE +K K +++ FIG LQ+NK++++ + +I+TV EK A+ L
Sbjct: 63 VQELVEKSQHPDIRSKCPEIRWHFIGHLQNNKINKVLSLPNLHMIQTVDSEKLATRLDAA 122
Query: 113 MIKQSR----FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAM 167
K L V IQ+NT E KSGI ++ + L + G+M I
Sbjct: 123 WAKLEPKPEQPLRVLIQINTSQEDVKSGIEISKAPSLYQYIKSNLKNLQLMGIMTIGAYG 182
Query: 168 GN----PKPHFYLLSEIARE-CKLTKL-------SMGMTRDFELAIASGATSVRIGSGIF 215
+ P P F L + R C+ L SMGM+ D++ AI G+T VRIG+ IF
Sbjct: 183 FDYSNGPNPDFVSLINVQRSICEANNLNPESVLVSMGMSNDYDKAIEMGSTIVRIGTSIF 242
Query: 216 GERPCQT 222
G R +
Sbjct: 243 GHRAAKN 249
>gi|315304082|ref|ZP_07874486.1| pyridoxal phosphate enzyme, YggS family [Listeria ivanovii FSL
F6-596]
gi|313627548|gb|EFR96277.1| pyridoxal phosphate enzyme, YggS family [Listeria ivanovii FSL
F6-596]
Length = 229
Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats.
Identities = 59/225 (26%), Positives = 105/225 (46%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ L+ ++IE + + R + +V+LVAV+K +D+ ++ G F EN+
Sbjct: 1 MTKQANLEKVTKQIELACAESNREESNVTLVAVTKTIDATEMIELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + D+ +IGSLQ+ KV +++ + + ++ R A + K +
Sbjct: 61 FLDKTTQLADKNDICWHYIGSLQTRKVKDVLPQINYLHSLDRATLAKEIEKRATK---PV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G + F+ + + GLM + P + + F+ L
Sbjct: 118 KCFLQVNISGEESKHGFSREEALSFLQE-ANFQFIEIVGLMTMAPITNSEQELHHVFHEL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGI 214
++ +E T+LSMGMT DF +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDFGIAITEGATFIRVGRAL 221
>gi|281420372|ref|ZP_06251371.1| pyridoxal phosphate enzyme, YggS family [Prevotella copri DSM
18205]
gi|281405517|gb|EFB36197.1| pyridoxal phosphate enzyme, YggS family [Prevotella copri DSM
18205]
Length = 224
Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats.
Identities = 60/231 (25%), Positives = 100/231 (43%), Gaps = 26/231 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L V LVA+SK ++ I A + GQ IF E+ QE
Sbjct: 4 DVKGNLHEVL----------GSLPAGVRLVAISKFHPNEYIEEAYAEGQRIFGESHEQEL 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KK L + D++ FIG LQ+NKV I +IE+V K + + K R +
Sbjct: 54 AKKVASLPE--DIEWHFIGHLQTNKVKYIAPYISMIESVDSLKLLKEIEKQAAKHDRVVK 111
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPK---PHFYL 176
V ++++ E KSG+ + ++ + R+ + + G+M + + + F
Sbjct: 112 VLLELHLAEEDTKSGLSLDACRELLEAGEWREMKHVQICGIMMMASNTDDEQQIAQEFDE 171
Query: 177 LSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ E K + S GM+ D+ +A+ G+T VR+G+ IFG R
Sbjct: 172 AARFFDEIKARYFADDEAFCERSWGMSHDYHIAVKHGSTMVRVGTTIFGPR 222
>gi|114571491|ref|YP_758171.1| hypothetical protein Mmar10_2952 [Maricaulis maris MCS10]
gi|114341953|gb|ABI67233.1| Protein of unknown function UPF0001 [Maricaulis maris MCS10]
Length = 225
Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats.
Identities = 98/218 (44%), Positives = 138/218 (63%), Gaps = 1/218 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + + I A A RP DS+ LVAVSK +++ AL+ GQ +F EN++QEA
Sbjct: 6 DIATRRDMLLTDIGKLAAEAGRPSDSIKLVAVSKRQSEERLDAALAAGQRVFGENRVQEA 65
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
W RK W D++LR IG LQSNK ++ V+LFDVIET+ R K A L EM +Q R
Sbjct: 66 MAHWGERRKVWSDLELRLIGPLQSNKAADAVALFDVIETLDRPKLADALRREMDRQGRRP 125
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+Y+QVNTG E QK+G++ ++ F+ R ++ + GLMCIPP P HF LL+ +
Sbjct: 126 RLYVQVNTGAETQKAGVLVSELPAFLTRMRDEFGFEISGLMCIPPVEQPPGLHFALLARL 185
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A + + LSMGM+ D+ +A+A GATSVRIG+G+FG+R
Sbjct: 186 AADNGIGHLSMGMSADYPVAVALGATSVRIGTGLFGDR 223
>gi|261367976|ref|ZP_05980859.1| pyridoxal phosphate enzyme, YggS family [Subdoligranulum variabile
DSM 15176]
gi|282569960|gb|EFB75495.1| pyridoxal phosphate enzyme, YggS family [Subdoligranulum variabile
DSM 15176]
Length = 240
Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats.
Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 14/232 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ + ++++ +A A R VSL A K +++R + +F EN +QE
Sbjct: 10 MT--EAVARIRERMAEAARRAGRDPAEVSLCAACKTRTVEEVRYSADLPIDLFGENHVQE 67
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K FIG LQ+NKV+++V +I++V + + +
Sbjct: 68 LVEKTDA-GAYNGKPGHFIGHLQTNKVNKVVGRAALIQSVDSTRLLDKIEAAAARLGLTQ 126
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
+ I++N G E KSG+ P+ + K L + GLM IPPA + + F +
Sbjct: 127 EILIEINIGAEESKSGVGPDDLWPLLEAAAAKEHLRLRGLMAIPPADADDDQTRRFFAEM 186
Query: 178 SEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ ++ LSMGM+ D+ +AI GAT VR+G+ I+G R
Sbjct: 187 RELLAAASDRHYDNAQMDILSMGMSHDYAMAIEEGATIVRVGTAIYGARDYS 238
>gi|195395082|ref|XP_002056165.1| GJ10370 [Drosophila virilis]
gi|194142874|gb|EDW59277.1| GJ10370 [Drosophila virilis]
Length = 254
Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats.
Identities = 73/247 (29%), Positives = 109/247 (44%), Gaps = 28/247 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
+ LQ ++IE + RPK+ LVAVSK + + A GQ F EN
Sbjct: 10 DINAGLQHVLKRIELALQ--SRPKEINAPKPLLVAVSKTKPVECVIAAYKAGQRHFGENY 67
Query: 58 LQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLE 112
+QE +K L + D++ IG LQSNK++ + + +++TV EK A+ +
Sbjct: 68 VQELVEKSQHPDILAQCPDIKWHLIGHLQSNKINHVLKLPNLHMVQTVDSEKLANKIDAA 127
Query: 113 MIKQ----SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAM 167
K S L V +Q+NT E KSGI + L G+M I
Sbjct: 128 WAKLQPTPSEPLRVLVQINTSGEDVKSGIDASAAPSLFKYISANLKHLQPVGIMTIGAYG 187
Query: 168 GN----PKPHFYLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ P P F L + R ++SMGM+ D++ AI G+T VR+G+ IF
Sbjct: 188 FDYSNGPNPDFVALMQAHRAICEANDMPPDALQVSMGMSNDYDKAIEMGSTIVRVGTAIF 247
Query: 216 GERPCQT 222
G R +
Sbjct: 248 GHRAAKA 254
>gi|161525824|ref|YP_001580836.1| alanine racemase domain-containing protein [Burkholderia
multivorans ATCC 17616]
gi|160343253|gb|ABX16339.1| alanine racemase domain protein [Burkholderia multivorans ATCC
17616]
Length = 235
Score = 238 bits (609), Expect = 3e-61, Method: Composition-based stats.
Identities = 77/231 (33%), Positives = 109/231 (47%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L+ ++I ++A A R SVSL+AVSK + +R A + GQ F EN +Q
Sbjct: 4 MSDLAVRLESVHRRIADAARAAGRDPASVSLLAVSKTFPADAVRAAHAAGQRAFGENYVQ 63
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L ++ FIG LQSNK + +D + +V R K A L+ +
Sbjct: 64 ESIDKIDALADLRASLEWHFIGPLQSNKTRAVAERYDWVHSVDRLKIAQRLAEQRPAHLP 123
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V +QVN E KSG+ P + + L + GLM IP +
Sbjct: 124 PLNVCVQVNISGEASKSGVAPAEVAEVARAVAALPSLRLRGLMAIPEPAADLDAQRVPHR 183
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 184 ALRTLFDALRADGLALDTLSMGMSADLEAAVLEGATIVRVGTAIFGARDYS 234
>gi|225873891|ref|YP_002755350.1| conserved hypothetical protein TIGR00044 [Acidobacterium capsulatum
ATCC 51196]
gi|225792315|gb|ACO32405.1| conserved hypothetical protein TIGR00044 [Acidobacterium capsulatum
ATCC 51196]
Length = 243
Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats.
Identities = 68/231 (29%), Positives = 116/231 (50%), Gaps = 14/231 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ N+L ++ I + A R ++SV L+AVSK + I A++ G +F EN++QE
Sbjct: 10 TFSNRLAQVEESIAAACRHAGRTRESVQLMAVSKTHPADAIAEAVAAGVTLFGENRVQEF 69
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++K L + + ++ IG LQSNK + +F ++TV + A L + +
Sbjct: 70 QQKAQELEQLGIQNAEVHLIGHLQSNKTGKAAEIFAGVDTVDSLRLAERLQDAAARLGKT 129
Query: 120 LPVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
LPV +++ E K+G+ P +T+ + + L + GLM + P G + F
Sbjct: 130 LPVLLEIKLSEEEAKTGLSPESEETRTLLERLPELTALKMRGLMTVAPLTGGETGTRDCF 189
Query: 175 YLLSEIAR-------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L ++ +LSMGM+ DF +AI G+T VRIG+ +FG+R
Sbjct: 190 RRLRKLRDAWSAAYPRLNFEELSMGMSGDFAIAIEEGSTCVRIGTALFGKR 240
>gi|308177568|ref|YP_003916974.1| pyridoxal phosphate-dependent enzyme [Arthrobacter arilaitensis
Re117]
gi|307745031|emb|CBT76003.1| putative pyridoxal phosphate-dependent enzyme [Arthrobacter
arilaitensis Re117]
Length = 245
Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats.
Identities = 75/225 (33%), Positives = 110/225 (48%), Gaps = 10/225 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L QKI +A +A R + SV L+ V+K +D+ ++ +A++ G ENK+QEA+ K+
Sbjct: 19 NLAAVNQKIAAAAEVAGRDRHSVRLLPVTKTIDTDRLALAIAAGVETLGENKVQEAQDKY 78
Query: 66 IPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
++ ++ IG LQ+NK + D + K A L + + R L V+I
Sbjct: 79 EHFIEQFPHLRYAIIGPLQTNKAKFVAKFADEFHALDSLKLAETLQRRLELEDRTLEVFI 138
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA 181
QVNT E KSGI + + +L GLM + + + F LL E
Sbjct: 139 QVNTSGEESKSGIEAADAANLLGSLAPLDRLTPVGLMTMAANTTDQAAVRASFSLLRETR 198
Query: 182 RECKLT------KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGM+ D+ELAIA GAT VR+G GIFG R
Sbjct: 199 DRLQQDAPAGFQHLSMGMSGDYELAIAEGATVVRVGQGIFGARSY 243
>gi|228476819|ref|ZP_04061464.1| pyridoxal phosphate enzyme, YggS family [Streptococcus salivarius
SK126]
gi|228251393|gb|EEK10538.1| pyridoxal phosphate enzyme, YggS family [Streptococcus salivarius
SK126]
Length = 227
Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 105/228 (46%), Gaps = 15/228 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ Q ++ + A R D V+++AV+K V S + G AEN++ +
Sbjct: 1 MTIEENKNNVYQAVKKACEKANRSSDDVNIIAVTKYVPSDVAEDLVKTGIKHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K +D+ IG+LQ KV ++++L D + K A + +
Sbjct: 61 FLDKYQAL-KNYDLTWHLIGTLQRRKVKDVINLVDYFHALDSVKLAEEIQKRA---DHTI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G P + + ++ + GLM + P + + F
Sbjct: 117 NCFLQVNVSGEESKHGFSPEELDTVLKQIEILDKICIVGLMTMAPIDADAQELDKIFAET 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E+ + + +LSMGM+RD+++AI +G+T VRIGS F E
Sbjct: 177 NELRQSIQEKKLKNVPCDQLSMGMSRDYDMAIQNGSTFVRIGSAFFKE 224
>gi|328948141|ref|YP_004365478.1| hypothetical protein Tresu_1273 [Treponema succinifaciens DSM 2489]
gi|328448465|gb|AEB14181.1| protein of unknown function UPF0001 [Treponema succinifaciens DSM
2489]
Length = 238
Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats.
Identities = 66/236 (27%), Positives = 115/236 (48%), Gaps = 20/236 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I+ + + R + V L AVSK ++ + AL GQ +F EN++QE+
Sbjct: 6 IAENFESVRNQIKEAEKKSGRKEGCVKLCAVSKFHPAEDVLAALKTGQTLFGENRVQESF 65
Query: 63 KKWIPLRKEWDVQ--LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ + ++ L IGSLQ+NKV + V + I++V RE+ + + + K + +
Sbjct: 66 AKFTQINSVSKIKPDLHIIGSLQTNKVKKAVEIASCIQSVDREELLAEIEKQCAKIEKKI 125
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-----YQLNVEGLMCIPPAMGNPK---P 172
V +++TG E KSG + + +GLM + P + K
Sbjct: 126 EVLFEIHTG-EDSKSGYKEKSV--LLKSVENCANGIYPHIVPKGLMTMAPFTQDEKLIHA 182
Query: 173 HFYLLSEIARE-------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L + E ++ +LSMGM+ D+++AI G+T VRIG+ +FGER
Sbjct: 183 SFSKLRNLKDELNKSFPSLEINELSMGMSGDYKIAIEEGSTLVRIGTALFGERDYS 238
>gi|326436868|gb|EGD82438.1| alanine racemase [Salpingoeca sp. ATCC 50818]
Length = 298
Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats.
Identities = 70/207 (33%), Positives = 100/207 (48%), Gaps = 16/207 (7%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
LVAVSK + + A GQ +F EN +QE +K R D++ FIG LQSNK
Sbjct: 85 PRLVAVSKTKPLQLVLDAYEAGQRVFGENYVQELVEKSNDPRVPEDIEWHFIGRLQSNKS 144
Query: 88 SEIVSLFDV--IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
+ + + ++ +ETV+ EK A L+ + L V++QVNT E K G+ P+
Sbjct: 145 NTLARVKNLKVVETVASEKLARTLNRAFAEHDAPLRVFMQVNTSGEENKGGVEPSDCAAL 204
Query: 146 VILCR-QKYQLNVEGLMCIPPA-----MGNPKPHFYLLS----EIARECKLT----KLSM 191
+ L + GLM I + F L +A + +LSM
Sbjct: 205 AAFIANECDHLQLAGLMTIGMLNRSLKTDDTNEDFETLVSCRGRVAEAIGVDADALELSM 264
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DFE AI G+T+VR+GS IFG R
Sbjct: 265 GMSSDFEHAIEMGSTNVRVGSTIFGAR 291
>gi|195575019|ref|XP_002105480.1| GD17245 [Drosophila simulans]
gi|194201407|gb|EDX14983.1| GD17245 [Drosophila simulans]
Length = 270
Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats.
Identities = 81/247 (32%), Positives = 116/247 (46%), Gaps = 28/247 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPK----DSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
+ LQ ++I+ +L +RPK LVAVSK ++ + A GQ F EN
Sbjct: 10 DVKAGLQHVLKRIDE--VLLQRPKVIQAARPLLVAVSKTKPAEAVIEAYEDGQRDFGENY 67
Query: 58 LQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLE 112
+QE ++K L K D++ FIG +QSNK+++I V +I+TV EK A+ L
Sbjct: 68 VQELEEKSRHPDILAKCPDIRWHFIGHMQSNKINKILSVPNLHMIQTVDSEKLATKLDAA 127
Query: 113 MIKQ----SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAM 167
K+ L V IQ+NT E KSGI + LN+ G+M I
Sbjct: 128 WSKRQPTPEEPLQVLIQINTSGEDVKSGIEAKDAPALYQYIKSNLKHLNLMGIMTIGAFG 187
Query: 168 GN----PKPHFYLLSEIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIF 215
+ P P F L ++ R +SMGM+ DF+ AI G+T VR+GS IF
Sbjct: 188 FDYASGPNPDFVSLMQVHRSICEAYSLAPDSVLVSMGMSHDFDKAIEMGSTVVRVGSSIF 247
Query: 216 GERPCQT 222
G R +
Sbjct: 248 GHRAAKA 254
>gi|189349455|ref|YP_001945083.1| hypothetical protein BMULJ_00583 [Burkholderia multivorans ATCC
17616]
gi|189333477|dbj|BAG42547.1| conserved hypothetical protein [Burkholderia multivorans ATCC
17616]
Length = 232
Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats.
Identities = 77/231 (33%), Positives = 109/231 (47%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L+ ++I ++A A R SVSL+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAVRLESVHRRIADAARAAGRDPASVSLLAVSKTFPADAVRAAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L ++ FIG LQSNK + +D + +V R K A L+ +
Sbjct: 61 ESIDKIDALADLRASLEWHFIGPLQSNKTRAVAERYDWVHSVDRLKIAQRLAEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V +QVN E KSG+ P + + L + GLM IP +
Sbjct: 121 PLNVCVQVNISGEASKSGVAPAEVAEVARAVAALPSLRLRGLMAIPEPAADLDAQRVPHR 180
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 181 ALRTLFDALRADGLALDTLSMGMSADLEAAVLEGATIVRVGTAIFGARDYS 231
>gi|149195666|ref|ZP_01872723.1| hypothetical protein LNTAR_17278 [Lentisphaera araneosa HTCC2155]
gi|149141128|gb|EDM29524.1| hypothetical protein LNTAR_17278 [Lentisphaera araneosa HTCC2155]
Length = 464
Score = 238 bits (609), Expect = 4e-61, Method: Composition-based stats.
Identities = 69/228 (30%), Positives = 108/228 (47%), Gaps = 10/228 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + I SA +R + L+ V+K + KI GQ FAEN++QE
Sbjct: 239 VPQRYDNVLNDIAESAKKHQRDMTDIQLLTVTKNHPADKIFALYKHGQNEFAENRVQELL 298
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + D+ IG LQSNKV + V + I +V A + ++ + + +
Sbjct: 299 TKAESLPQ--DIHWHLIGPLQSNKVRQAVKVAKTIHSVDNTSLAKRIDRIAEEEGKQIDI 356
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+IQ+N EIQKSGI + +I C + +N+ GLM + P + + + + E+
Sbjct: 357 FIQLNLTGEIQKSGISTLSLEKLLISCSELKNINLIGLMTMGPLSASKEENLKVFKELKE 416
Query: 183 EC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ KLSMGM+ DF+ AI G+ +RIGS I G R +T
Sbjct: 417 QSVEHSKYFENDVKLSMGMSGDFDEAIECGSHILRIGSAIMGTRTYET 464
>gi|213510984|ref|NP_001135276.1| proline synthase co-transcribed bacterial homolog protein [Salmo
salar]
gi|209155828|gb|ACI34146.1| Proline synthetase co-transcribed bacterial homolog protein [Salmo
salar]
Length = 282
Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats.
Identities = 78/250 (31%), Positives = 112/250 (44%), Gaps = 30/250 (12%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFA 54
MS +G LQ ++ +A A+RPK LVAVSK + A G F
Sbjct: 6 MSEEVGKALQAVVDRVNQAA--ARRPKTLPVVPPRLVAVSKTKPPDMVIEAYRKGHRNFG 63
Query: 55 ENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLL 109
EN + E K L +++ FIG LQ N V+++ V ++ETV K A +
Sbjct: 64 ENYVNELVDKASNPQILESCPEIEWHFIGHLQKNNVNKLLGVPNLFMVETVDSVKLADKV 123
Query: 110 S----LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIP 164
+ ++ L + +Q+NT E K G+ P++T V + L+ GLM I
Sbjct: 124 NSSWLRLRTASTQTLKIMVQINTSGEESKHGLPPDETVTTVKHILSKCSALHFSGLMTIG 183
Query: 165 ----PAMGNPKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGS 212
P P F L E+ +L +LSMGM+ DFE AI G+T+VR+GS
Sbjct: 184 RYGYDLADGPNPDFQALLSRRQEVCASLQLPLEDVELSMGMSTDFEHAIEVGSTNVRVGS 243
Query: 213 GIFGERPCQT 222
IFG R
Sbjct: 244 TIFGNRDYPN 253
>gi|195505095|ref|XP_002099361.1| GE23404 [Drosophila yakuba]
gi|194185462|gb|EDW99073.1| GE23404 [Drosophila yakuba]
Length = 254
Score = 238 bits (608), Expect = 4e-61, Method: Composition-based stats.
Identities = 82/247 (33%), Positives = 117/247 (47%), Gaps = 28/247 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
+ LQ ++I+ +L +RPK+ LVAVSK ++ + A GQ F EN
Sbjct: 10 DVKAGLQHVLKRIDE--VLLQRPKEVAAARPLLVAVSKTKPAEAVIEAYEAGQRDFGENY 67
Query: 58 LQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLE 112
+QE ++K L K D++ FIG +QSNK++++ V +I+TV EK A+ L
Sbjct: 68 VQELEEKSRHPDILAKCPDIRWHFIGHMQSNKINKVLSVPNLRMIQTVDSEKLATKLDAA 127
Query: 113 MIKQ----SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAM 167
KQ L V IQ+NT E KSGI R LN+ G+M I
Sbjct: 128 WSKQQPTPEEPLQVLIQINTSGEDVKSGIEAKDAPALYQFIRSNLKHLNLLGIMTIGAYG 187
Query: 168 GN----PKPHFYLLSEIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGIF 215
+ P P F L ++ R +SMGM+ DF+ AI G+T VR+GS IF
Sbjct: 188 FDYSNGPNPDFVSLMQVHRAICEAHSLAPDSVLVSMGMSNDFDKAIEMGSTVVRVGSSIF 247
Query: 216 GERPCQT 222
G R +
Sbjct: 248 GHRAAKA 254
>gi|194905647|ref|XP_001981231.1| GG11955 [Drosophila erecta]
gi|190655869|gb|EDV53101.1| GG11955 [Drosophila erecta]
Length = 254
Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats.
Identities = 79/248 (31%), Positives = 116/248 (46%), Gaps = 30/248 (12%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVS-----LVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ LQ ++I+ +L +R V LVAVSK ++ + A GQ F EN
Sbjct: 10 DVKAGLQHVLKRIDE--VLLQR-PKEVQAARPLLVAVSKTKPAEAVIEAYEAGQRDFGEN 66
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSL 111
+QE ++K L K D++ FIG +Q+NK++++ V +I+TV EK A+ L
Sbjct: 67 YVQELEEKSRHPDILAKCPDIRWHFIGHMQTNKINKVLAVPNLRMIQTVDSEKLATKLDA 126
Query: 112 EMIKQ----SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPA 166
K+ + L V IQ+NT E KSGI R LN+ G+M I
Sbjct: 127 AWSKRQPAPAEPLQVLIQINTSGEDVKSGIEAKDAPALYQYIRSNLKHLNLTGIMTIGAF 186
Query: 167 MGN----PKPHFYLLSEIARECKLTK--------LSMGMTRDFELAIASGATSVRIGSGI 214
+ P P F L ++ R +SMGM+ DF+ AI G+T VR+GS I
Sbjct: 187 GFDYSKGPNPDFVSLMQVHRSICEAHSLAPDSVLVSMGMSNDFDKAIEMGSTVVRVGSSI 246
Query: 215 FGERPCQT 222
FG R +
Sbjct: 247 FGHRAAKA 254
>gi|288928406|ref|ZP_06422253.1| pyridoxal phosphate enzyme, YggS family [Prevotella sp. oral taxon
317 str. F0108]
gi|288331240|gb|EFC69824.1| pyridoxal phosphate enzyme, YggS family [Prevotella sp. oral taxon
317 str. F0108]
Length = 220
Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats.
Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 16/210 (7%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V LVAVSK ++++ A GQ IF E++ QE +K L K D+ FIG LQ+
Sbjct: 13 PPHVRLVAVSKFHPNEELMAAYEQGQRIFGESQEQELSRKAAELPK--DIAWHFIGHLQT 70
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV I D+IE V + ++ + K R + V ++++ E K G P+ ++
Sbjct: 71 NKVKYIAPFIDMIEAVDSLRLLREINKQAEKCGRVIDVLLELHVAQEATKYGFTPDACRE 130
Query: 145 FVI--LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IARECK---------LTKLS 190
+ R+ + + GLM + + N + ++ E K + S
Sbjct: 131 MLASGEWRKLSHIRICGLMTMASNVDNEEQIRAEMTTAWHFFDEIKSQYFAHDDAFKERS 190
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERPC 220
GM+ D+ +A+ G+T VR+G+ IFGER
Sbjct: 191 WGMSHDYPIALQCGSTMVRVGTNIFGERQY 220
>gi|260592419|ref|ZP_05857877.1| pyridoxal phosphate enzyme, YggS family [Prevotella veroralis
F0319]
gi|260535655|gb|EEX18272.1| pyridoxal phosphate enzyme, YggS family [Prevotella veroralis
F0319]
Length = 223
Score = 238 bits (608), Expect = 5e-61, Method: Composition-based stats.
Identities = 64/231 (27%), Positives = 104/231 (45%), Gaps = 26/231 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + D V LVA+SK + I VA GQ IF E+ QE
Sbjct: 3 DVAKNLHEVLDTL----------PDGVKLVAISKFHPKEYIEVAYREGQRIFGESHEQEL 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + D++ FIG LQ+NKV I S +IE V K ++ + K +R +
Sbjct: 53 AGKVQSLPQ--DIEWHFIGHLQTNKVKYIASYISMIEAVDTVKLLKEINKQAAKYNRVIN 110
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
V ++++ E K G PN ++F+ R+ +++ GLM + + + + +
Sbjct: 111 VLLELHIAEEESKYGFTPNACREFLKSGEWRELKNVHISGLMMMASNVEDQEQIRKEMIF 170
Query: 178 -SEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
S + E K + S GM+ D+ +A+ +T VR+G+ IFG R
Sbjct: 171 ASNLFDELKASYFSDDPEFKERSWGMSHDYPIAVECHSTMVRVGTAIFGPR 221
>gi|188585941|ref|YP_001917486.1| alanine racemase domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350628|gb|ACB84898.1| alanine racemase domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 233
Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats.
Identities = 63/231 (27%), Positives = 115/231 (49%), Gaps = 14/231 (6%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M+ + + LQ K+K+ SA L + D ++L+ ++K +++I G ENK+
Sbjct: 1 MTAYIKSNLQEIKEKMSKSAELVGKSLDDLTLIGITKYATTEQIAELYRLGVTNIGENKV 60
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
Q+A K L ++ ++ F+G LQSNKV +++ + + + R A L K +
Sbjct: 61 QDALPKIEEL-EDLEINWHFVGHLQSNKVKYLINHISLYQALDRTSLAKELHKRADKNNV 119
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNP---KPHF 174
+ +Q+N + K G+ +T+ F+ ++N++GLM +PP P +P++
Sbjct: 120 NVNALVQINIAGDENKFGLSQEETEHFIEKVLNNYPRINIKGLMTMPPYFSEPEQVRPYY 179
Query: 175 YLLSEIAR-------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ E+ E LSMGM+ D+ +AI GA VR+G +F +R
Sbjct: 180 SRMRELFELFKTKFGEQHFQYLSMGMSHDYHIAIEEGANMVRVGRSLFTQR 230
>gi|148244385|ref|YP_001219079.1| hypothetical protein COSY_0225 [Candidatus Vesicomyosocius okutanii
HA]
gi|146326212|dbj|BAF61355.1| conserved hypothetical protein [Candidatus Vesicomyosocius okutanii
HA]
Length = 212
Score = 238 bits (607), Expect = 6e-61, Method: Composition-based stats.
Identities = 76/216 (35%), Positives = 113/216 (52%), Gaps = 6/216 (2%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L + +I SV+LVAVSK +++ A+ GQ FAEN LQEA
Sbjct: 2 IKDNLIKVQLRISQV-----NHTQSVTLVAVSKTRSVYELQQAIDVGQQHFAENYLQEAL 56
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ + ++ FIG +QSNK +I FD + ++ R K A L+ + K L V
Sbjct: 57 IKINHLKGQ-NLIWHFIGPIQSNKTLKIAKNFDWVHSIGRLKIAQRLNDQRPKNLPKLKV 115
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+Q+N E KSG++ Q + + L + G MC+P + + + + I +
Sbjct: 116 LLQINIDNEPTKSGVLVGQIDELITHFESLKNLTLRGFMCVPNPFSSAQSFSRMENIIKQ 175
Query: 183 ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L LSMGM+ D ELAI +GATSVRIG+ IFG+R
Sbjct: 176 YSNLDVLSMGMSHDLELAIENGATSVRIGADIFGKR 211
>gi|169335055|ref|ZP_02862248.1| hypothetical protein ANASTE_01461 [Anaerofustis stercorihominis DSM
17244]
gi|169257793|gb|EDS71759.1| hypothetical protein ANASTE_01461 [Anaerofustis stercorihominis DSM
17244]
Length = 231
Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats.
Identities = 61/228 (26%), Positives = 110/228 (48%), Gaps = 15/228 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + L I+ S + ++V L+AV+K +++I+ + G ENK++E
Sbjct: 3 MSIKDNLDKILNNIKTSGDNSAFN-ENVKLLAVTKFRTNEEIKEVIDYGIKDLGENKVKE 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ + + ++ FIG LQ NKV +IV +I +V + ++ + K+
Sbjct: 62 FLGKYEYFKGQ-NINWHFIGHLQRNKVKDIVGKVHLIHSVDSIRLMEEINKQSEKKDIIT 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
+ I+ N G E K G ++ ++ + +NV G+MC+ P + F L
Sbjct: 121 NILIEFNIGKEENKYGFDESEVEEAFNKSIEFKNINVMGVMCMAPFTKDKDVLVNVFRKL 180
Query: 178 SEIARECK----------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+I C+ L+ +SMGM+ D+++AI G+ VRIG+ IF
Sbjct: 181 RKIYDNCRNMYNKCDNINLSVISMGMSNDYQVAIDEGSNIVRIGTSIF 228
>gi|307719387|ref|YP_003874919.1| pyridoxal 5'-phosphate-dependent enzyme [Spirochaeta thermophila
DSM 6192]
gi|306533112|gb|ADN02646.1| predicted pyridoxal 5'-phosphate-dependent enzyme [Spirochaeta
thermophila DSM 6192]
Length = 230
Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats.
Identities = 66/223 (29%), Positives = 100/223 (44%), Gaps = 17/223 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +++ + A R + V ++AV+K+ + I A G +F EN+LQEA K
Sbjct: 12 LDEVRER----CVKAGRRPEEVRVMAVTKLHGPEAIADAYRAGIRLFGENRLQEAASKRE 67
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
D +L IG LQ NK + V LF I +V R L + LPV ++V
Sbjct: 68 AFP--PDAELHLIGHLQRNKARKAVELFSCIHSVDRIPLIEALEKAWGDRGGRLPVLVEV 125
Query: 127 NTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
N E K G + + L G M + P + + F L E+A
Sbjct: 126 NISGEETKYGFRTEEEVGQALERLAASPALEPRGFMTMAPYTDDERVIRAVFGGLRELAS 185
Query: 183 ECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L +LSMGM+ D+ +AI G+T +R+G+ +FGER
Sbjct: 186 RMQKAFPSLPLAELSMGMSNDYPIAIEEGSTILRLGTVLFGER 228
>gi|253577873|ref|ZP_04855145.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850191|gb|EES78149.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 192
Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats.
Identities = 57/180 (31%), Positives = 89/180 (49%), Gaps = 2/180 (1%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +KL + K+ IE + A R V+L+AVSK + ++ A G +F ENK+QE
Sbjct: 2 LADKLNLVKKNIEEACDTAGRSPQEVTLIAVSKTKPVEMLKEAYDAGARVFGENKVQEIV 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ + DVQ IG LQ NKV I+ +I +V + A + E K+ +PV
Sbjct: 62 DKYDQMPS--DVQWHMIGHLQRNKVKYIIDKVSMIHSVDSVRLAEAIEKEAAKKDICMPV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
I+VN E K G+ + F+ L V+GLM I P + NP+ + + ++ +
Sbjct: 120 LIEVNVAGEESKFGLSVEEVLPFLEEISSYEHLQVKGLMTIAPFVANPEENREVFQKLKK 179
>gi|221202249|ref|ZP_03575283.1| pyridoxal phosphate enzyme, YggS family [Burkholderia multivorans
CGD2M]
gi|221209162|ref|ZP_03582155.1| pyridoxal phosphate enzyme, YggS family [Burkholderia multivorans
CGD2]
gi|221170980|gb|EEE03434.1| pyridoxal phosphate enzyme, YggS family [Burkholderia multivorans
CGD2]
gi|221177823|gb|EEE10236.1| pyridoxal phosphate enzyme, YggS family [Burkholderia multivorans
CGD2M]
Length = 235
Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 109/231 (47%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L+ ++I ++A A R SVSL+AVSK + +R A + GQ F EN +Q
Sbjct: 4 MSDLAVRLKSVHRRIADAARAAGRDPASVSLLAVSKTFPADAVRAAHAAGQRAFGENYVQ 63
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L ++ FIG LQSNK + +D + ++ R K A L+ +
Sbjct: 64 ESIDKIDALADLRASLEWHFIGPLQSNKTRAVAERYDWVHSIDRLKIAQRLAEQRPAHLP 123
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V +QVN E KSG+ P + + L + GLM IP +
Sbjct: 124 PLNVCVQVNISGEASKSGVAPAEVAEVARAVAALPSLRLRGLMAIPEPAADLDAQRVPHR 183
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 184 ALRTLFDALRADGLPLDTLSMGMSADLEAAVLEGATIVRVGTAIFGARDYS 234
>gi|241598580|ref|XP_002404760.1| proline synthetase associated protein, putative [Ixodes scapularis]
gi|215500480|gb|EEC09974.1| proline synthetase associated protein, putative [Ixodes scapularis]
Length = 248
Score = 237 bits (606), Expect = 7e-61, Method: Composition-based stats.
Identities = 77/237 (32%), Positives = 116/237 (48%), Gaps = 21/237 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ LQ+ ++K+ ++ P LVAVSK ++ + A GQ F EN +QE +
Sbjct: 10 IAKALQLVREKVVAASKERSGPPA--RLVAVSKTKPAELLIAAYEEGQRHFGENYIQELE 67
Query: 63 KKWIPLR---KEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIKQS 117
+K +++ FIG LQ NKV+++ V ++ET+ KTA L+
Sbjct: 68 EKANSPEIQTACPEIKWHFIGRLQRNKVAKLAKVPNLFMVETLESSKTAMALNSCWALNG 127
Query: 118 -RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN----PK 171
L V +QVNT E QK+G+ P + V ++ L GLM I A + P
Sbjct: 128 LPPLNVMVQVNTSGEEQKNGVEPKEAASLVEFVLKECPNLKFSGLMTIGMAEYDATAGPN 187
Query: 172 PHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
P F L E+ +E L +LSMGM+ D+E A+ G+T+VR+GS IFG R
Sbjct: 188 PDFVSLLKSREELCKELNLDVGAVELSMGMSADYEEAVRMGSTNVRVGSTIFGPRNY 244
>gi|33592437|ref|NP_880081.1| hypothetical protein BP1320 [Bordetella pertussis Tohama I]
gi|33601847|ref|NP_889407.1| hypothetical protein BB2871 [Bordetella bronchiseptica RB50]
gi|33572082|emb|CAE41614.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|33576284|emb|CAE33363.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
gi|332381853|gb|AEE66700.1| hypothetical protein BPTD_1308 [Bordetella pertussis CS]
Length = 271
Score = 237 bits (606), Expect = 8e-61, Method: Composition-based stats.
Identities = 68/225 (30%), Positives = 103/225 (45%), Gaps = 11/225 (4%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ L + ++ + A R V L+ VSK VD +IR++ + G ENK+QEA +K
Sbjct: 27 HNLAAVRARMAAACQRAGRDPAGVRLLPVSKTVDEARIRMSYAAGCRELGENKVQEAYRK 86
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
W + D++ IG LQ+NK + + + + A L + + R L VY+
Sbjct: 87 WEAMADLADLRWSVIGHLQTNKAKLVARFAAEFQALDSVRLAEALERRLQAEGRALDVYV 146
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL------- 177
QVNT E K G+ P++ F+ L V GLM + +
Sbjct: 147 QVNTSGEASKYGLHPDEAAAFIRQLPSYGALRVRGLMTLAVLSADAARVRQCFVLLRTLR 206
Query: 178 ----SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E L +LSMGM+ D+E+AI GAT VR+G I+G R
Sbjct: 207 DRLRQEAPAGVSLDELSMGMSGDYEIAIEEGATVVRVGQAIYGAR 251
>gi|260494764|ref|ZP_05814894.1| proline synthetase associated protein [Fusobacterium sp. 3_1_33]
gi|260197926|gb|EEW95443.1| proline synthetase associated protein [Fusobacterium sp. 3_1_33]
Length = 223
Score = 237 bits (606), Expect = 8e-61, Method: Composition-based stats.
Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + I + V LVAV+K + I L GQ I ENK+Q
Sbjct: 1 MSIKTNVEEILEDI----KKYSPYPEKVKLVAVTKYSSVEDIEEFLETGQDICGENKVQV 56
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K + K ++ FIG+LQ NKV I+ D+I +V++ A ++ + + S+
Sbjct: 57 IKDKIEYFKEKNKKIKWHFIGNLQKNKVKYIIDDVDLIHSVNKLSLAQEINKKAEQSSKI 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ V +++N E K G ++ K +I + LN+ G+M + P + + F
Sbjct: 117 MDVLLEINVYGEESKQGYSLDELKCDIIELQNLKNLNIIGVMTMAPFTDDEKILRMVFSE 176
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L +I E LT+LSMGM+ D+++A+ G+T +R+G+ IF
Sbjct: 177 LRKIRDELNKEYFNNSLTELSMGMSNDYKIALQEGSTFIRVGTKIF 222
>gi|256395234|ref|YP_003116798.1| alanine racemase domain-containing protein [Catenulispora
acidiphila DSM 44928]
gi|256361460|gb|ACU74957.1| alanine racemase domain protein [Catenulispora acidiphila DSM
44928]
Length = 247
Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats.
Identities = 69/227 (30%), Positives = 103/227 (45%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L ++ I +A A R VSL+AV+K + +RV G + EN+ QEA
Sbjct: 21 ISENLAAVREDIAAAARKASRDPSEVSLIAVTKTYPASDVRVLAELGVLDVGENRDQEAA 80
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K ++ FIG LQ+NK S + D + +V R + + LS ++ + L
Sbjct: 81 PKARA-TAGLGLRWHFIGQLQTNKASSVAEYADFVHSVDRIRLVAALSRSAVRYDKELTC 139
Query: 123 YIQVNTG------YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+QV+ G + G P+Q + LN+ GLM + P P P F
Sbjct: 140 LVQVDLGNAEPMDDNAARGGAFPDQVPELADAIAAAPGLNLGGLMAVAPLGAEPGPAFER 199
Query: 177 LSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +A + T +S GM+ D A+A+GAT VRIGS I G R
Sbjct: 200 LHTLAMRLRTTHPSATMISAGMSGDLGEAVAAGATHVRIGSAILGIR 246
>gi|297626139|ref|YP_003687902.1| alanine racemase [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
gi|296921904|emb|CBL56464.1| alanine racemase [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 250
Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats.
Identities = 70/237 (29%), Positives = 101/237 (42%), Gaps = 19/237 (8%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL-----SCGQ---VIFAEN 56
+++ + ++ A R V L+ VSK + +R G +F EN
Sbjct: 12 ERVRGVLAGVTDACERAGRDPARVRLLPVSKTHPIEAVRQVNGALERQAGHVPHRLFGEN 71
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+QE K LR + D IG LQSNKV+ + L D + + K A L +
Sbjct: 72 HVQEIVAKTDELRPDDDFGFALIGHLQSNKVNAVAGLIDEFQALDSLKLAGRLDRRLNTL 131
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPH 173
R L V ++VNT E K GI + +DF L V GLM + P
Sbjct: 132 GRGLRVLVEVNTSGEAAKHGIDVDDAQDFCRALADFDALTVAGLMTVAVNSPDRERVAAC 191
Query: 174 FYLLSEIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
F L + + +LSMGM+ D+ LAI GAT+VR+G+ +FG R T
Sbjct: 192 FDRLVALQSRLRDDGVLGSDWAELSMGMSGDYPLAIEHGATTVRVGTALFGPRDYGT 248
>gi|152976261|ref|YP_001375778.1| alanine racemase domain-containing protein [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152025013|gb|ABS22783.1| alanine racemase domain protein [Bacillus cytotoxicus NVH 391-98]
Length = 224
Score = 237 bits (605), Expect = 9e-61, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 109/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L V +++++ + A R V LVAV+K V +K + G EN+ +
Sbjct: 1 MTVQENLAVIQEEMKQACERAGRSIHDVKLVAVTKTVGIEKTNEVVEAGIADLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + V FIGSLQ+ KV EI+S D + ++ R A + K +
Sbjct: 61 FLQKYEHFGSQ--VNWHFIGSLQTRKVKEIISHIDYLHSLDRLSLAREIQKRATK---PV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
+IQV T E K G+ + +FV ++ ++ V GLM + P + F L
Sbjct: 116 KCFIQVKTSREESKQGLQVEELIEFVHALKEFDKIEVVGLMTMAPFTEDEAEIRGCFKTL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ ++ + +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQQQVQELRLSYAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|325680288|ref|ZP_08159848.1| pyridoxal phosphate enzyme, YggS family [Ruminococcus albus 8]
gi|324107997|gb|EGC02253.1| pyridoxal phosphate enzyme, YggS family [Ruminococcus albus 8]
Length = 246
Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats.
Identities = 71/227 (31%), Positives = 114/227 (50%), Gaps = 11/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +EN+ + D+VS++AV+K V +KI A+S G + EN++QE
Sbjct: 20 NVLENYKRIIYNVENAKAKYRSADDNVSIMAVTKTVAPEKINFAISQGITLLGENRVQEY 79
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K K V IG LQ+NKV I++ +I++V K A ++ +K R +
Sbjct: 80 LSKKDQYDKTAQV--HMIGRLQTNKVKYIINEVAMIQSVDSIKLAKEINRLAVKNDRVMD 137
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V +++N G E KSG+ + + Q + ++GLM IPP +G + F + I
Sbjct: 138 VLLEINIGDEASKSGVAAEGLDELIYEAAQLENVRIKGLMAIPP-VGCGEDMFDKMHSIF 196
Query: 182 RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
K + LSMGM+ D+ELAI G+ VRIG+ +FG R
Sbjct: 197 LRVKEMAVPGVSMETLSMGMSGDYELAIKHGSNLVRIGTALFGARNY 243
>gi|269926055|ref|YP_003322678.1| alanine racemase domain protein [Thermobaculum terrenum ATCC
BAA-798]
gi|269789715|gb|ACZ41856.1| alanine racemase domain protein [Thermobaculum terrenum ATCC
BAA-798]
Length = 229
Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats.
Identities = 71/219 (32%), Positives = 113/219 (51%), Gaps = 11/219 (5%)
Query: 9 VFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL 68
+K + AI + R D+V+++A +K + + AL G EN++QEA+ KW
Sbjct: 12 EVIEKCRDRAIASGRTPDAVTIIAAAKTFPVEHVLPALEAGIRDVGENRVQEAEAKWSDH 71
Query: 69 RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
++L IG+LQ NKV + ++LFD+I + S + +S Q + P+ ++VN
Sbjct: 72 YIRNAIRLHMIGTLQKNKVKKAINLFDIIHSCSSVELGLRISNY--SQDKLFPILLEVNL 129
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAREC- 184
E K+G ++ V Q L + GLM IPP +P +P+F L ++ +
Sbjct: 130 ANEPSKTGFPASELVPAVEQLGQVPNLKLLGLMAIPPYSPDPEQSRPYFAQLRRLSDDLC 189
Query: 185 -KLT----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +LSMGM+ D+ +AI GAT VRIG IFG R
Sbjct: 190 SRYDFFGPELSMGMSEDYLVAIEEGATMVRIGRAIFGPR 228
>gi|285018925|ref|YP_003376636.1| alanine racemase [Xanthomonas albilineans GPE PC73]
gi|283474143|emb|CBA16644.1| putative alanine racemase protein [Xanthomonas albilineans]
Length = 229
Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats.
Identities = 77/220 (35%), Positives = 106/220 (48%), Gaps = 11/220 (5%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ + +E +A A RP L+AVSK + + + GQ F EN +QEA K
Sbjct: 6 LQQIRLDMERAADAAGRPPA--QLLAVSKTQTAAAVAALAAQGQRAFGENYVQEAADKVA 63
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L E ++ IG LQSNK +LFD +++V R K + L+ L V IQV
Sbjct: 64 AL-AEAGLEWHLIGHLQSNKAELAATLFDWVQSVDRPKLIAPLAKGRPSTRGPLNVLIQV 122
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIARE 183
N E K G P+Q + I + L + GLM IP P + F + +
Sbjct: 123 NIDDEASKHGCHPDQIEPLAIAIAAQPALALRGLMAIPAPWPEAERREAAFIRMRTLFEH 182
Query: 184 C-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ LSMGM+ DF AIA+GAT VRIG+ +FG R
Sbjct: 183 LRDAYPRVDTLSMGMSGDFAQAIAAGATLVRIGTALFGAR 222
>gi|328696677|ref|XP_001943141.2| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like [Acyrthosiphon pisum]
gi|239791204|dbj|BAH72101.1| ACYPI009997 [Acyrthosiphon pisum]
Length = 278
Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats.
Identities = 83/247 (33%), Positives = 119/247 (48%), Gaps = 28/247 (11%)
Query: 1 MSLGNK----LQVFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFA 54
MS L +++IE A R + +V LVAVSK + I GQ F
Sbjct: 31 MSTLENVIDGLNDVRRRIEVVAQK--RKEGNVEPRLVAVSKTKPIEHIIGIYQKGQRYFG 88
Query: 55 ENKLQEAKKKW---IPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLL 109
EN +QE K L K D++ FIG +Q NKVS++ V VIET+ EK A+ +
Sbjct: 89 ENYVQELITKSSDVELLEKCRDIKWHFIGHIQKNKVSKVLMVPGLHVIETIDSEKLANAV 148
Query: 110 SLEMIKQSR--FLPVYIQVNTGYEIQKSGIMPNQTKDFVI-LCRQKYQLNVEGLMCIPPA 166
+ K ++ L + +QVNT E +K G+ + D + + L + GLM I
Sbjct: 149 NDGWKKLNKESKLKIMVQVNTSNEKEKFGVATDTVVDLCKFIIEKCDHLELIGLMTIGQY 208
Query: 167 MGN----PKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGI 214
+ P P F L ++ + KL +LSMGM+ DFE AI G+T+VR+GS I
Sbjct: 209 GYDCSQGPNPDFLALIDCKRDVCDKLKLNPSEIELSMGMSDDFEQAIELGSTNVRVGSSI 268
Query: 215 FGERPCQ 221
FG R +
Sbjct: 269 FGFRARK 275
>gi|317968896|ref|ZP_07970286.1| hypothetical protein SCB02_05105 [Synechococcus sp. CB0205]
Length = 199
Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats.
Identities = 62/197 (31%), Positives = 95/197 (48%), Gaps = 3/197 (1%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
L+AVSK + IR + GQ F E++LQEA K L D+ FIG LQ+
Sbjct: 2 PSHTRLLAVSKGHPASSIRALVQAGQRSFGESRLQEATAKQQELTDCVDLDWHFIGRLQA 61
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV ++ F VI +V A +S ++ +++QV + K G+ + +
Sbjct: 62 NKVRPVLKQFSVIHSVDSLSLAERISRIAGEEGLLPSIFLQVKLRPDPNKGGLSVEELER 121
Query: 145 FVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI 201
+Q L + GLM + P F S +A+ L +LSMGM+ D+ A
Sbjct: 122 EWPRLQQLPHLRIVGLMTMAPLEVEGAERAALFAECSALAQRLGLAELSMGMSGDWPEAA 181
Query: 202 ASGATSVRIGSGIFGER 218
A+G+T VR+GS +FG +
Sbjct: 182 AAGSTWVRVGSALFGPK 198
>gi|187607726|ref|NP_001119881.1| proline synthase co-transcribed bacterial homolog protein [Danio
rerio]
gi|169642405|gb|AAI60662.1| Prosc protein [Danio rerio]
Length = 283
Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats.
Identities = 76/250 (30%), Positives = 119/250 (47%), Gaps = 30/250 (12%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFA 54
MS +G K+Q +++ + +++RPK LVAVSK + + A GQ F
Sbjct: 7 MSEEVGKKVQAVVERVNQA--VSRRPKTLPCIPPRLVAVSKTKPPEMVVEAYKHGQRNFG 64
Query: 55 ENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLL 109
EN + E +K L +++ FIG LQ V+++ V ++ET+ K A +
Sbjct: 65 ENYVNELVEKASNPQILSSCPEIKWHFIGHLQKGNVNKLLGVPNLYMVETIDSVKLAEKV 124
Query: 110 S----LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCIP 164
+ + L + +Q+NT E K G+ P++T + V Q L++ GLM I
Sbjct: 125 NSSWQKLRAANTHRLKIMVQINTSGEDSKHGLPPDETVNMVKHVVSQCPALDLAGLMTIG 184
Query: 165 PAMGN----PKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGS 212
+ P P F LL E+ K+ +LSMGM+ DFE AI G+T++R+GS
Sbjct: 185 RYGYDLNDGPNPDFQLLLKCRVEVCESLKIPLEQVELSMGMSTDFEHAIEVGSTNIRVGS 244
Query: 213 GIFGERPCQT 222
IFG R
Sbjct: 245 TIFGTREYPN 254
>gi|256844915|ref|ZP_05550373.1| proline synthetase associated protein [Fusobacterium sp. 3_1_36A2]
gi|256718474|gb|EEU32029.1| proline synthetase associated protein [Fusobacterium sp. 3_1_36A2]
Length = 223
Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats.
Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + I + V LVAV+K + I L GQ I ENK+Q
Sbjct: 1 MSIKTNVEEILEDI----KKYSPYPEKVKLVAVTKYSSVEDIEEFLETGQNICGENKVQV 56
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K + K ++ FIG+LQ NKV I+ D+I +V++ A ++ + + +
Sbjct: 57 IKDKIEYFKEKNKKIKWHFIGNLQKNKVKYIIDDVDLIHSVNKLSLAQEINKKAEQSGKI 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ V +++N E K G ++ K +I + LN+ G+M + P + + F
Sbjct: 117 MDVLLEINVYGEESKQGYSLDELKCDIIELQNLKNLNIIGVMTMAPFTDDEKILRMVFSE 176
Query: 177 LSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L +I E LT+LSMGM+ D+++A+ G+T +R+G+ IF
Sbjct: 177 LRKIKGELNKEYFNNNLTELSMGMSNDYKIALQEGSTFIRVGTKIF 222
>gi|284929616|ref|YP_003422138.1| YggS family protein [cyanobacterium UCYN-A]
gi|284810060|gb|ADB95757.1| pyridoxal phosphate enzyme, YggS family [cyanobacterium UCYN-A]
Length = 218
Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats.
Identities = 65/227 (28%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ + +I SVSL+ VSK + I+ A + G FAEN+LQE
Sbjct: 1 MEINKRITQIRSEI----------PSSVSLIVVSKQQSVESIKEAYNSGIRDFAENRLQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K L++ D+ FIG LQ+NK +++ F+ I +V + A L+ + K S
Sbjct: 51 ALEKQEELKEYDDISWHFIGHLQTNKAKKVLENFNWIHSVDSLRLAQHLNQIIEKISASP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
+ +QV + K G +P + + + L + GLM I P + F +
Sbjct: 111 YICLQVKAMPDPDKYGWLPETLWEDLHELEKCKNLMIRGLMTILPLNLSTNESLHAFQKV 170
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A++ L +LSMGM+ D+ LAI T +R+G IF +
Sbjct: 171 QTLAQDINEKSSLFLKELSMGMSNDYLLAIQKNTTMIRLGRTIFEPK 217
>gi|229495772|ref|ZP_04389500.1| pyridoxal phosphate enzyme, YggS family [Porphyromonas endodontalis
ATCC 35406]
gi|229317346|gb|EEN83251.1| pyridoxal phosphate enzyme, YggS family [Porphyromonas endodontalis
ATCC 35406]
Length = 242
Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats.
Identities = 56/236 (23%), Positives = 96/236 (40%), Gaps = 29/236 (12%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L + +I + +LV VSK +I+ A G F EN++QE
Sbjct: 19 TIQERLDQIRPQI----------PSNATLVVVSKYHAVDEIKEAYDAGVRDFGENRVQEL 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + D++ IGSLQ NKV I I+++ + + +R +
Sbjct: 69 VSKVDKLPE--DIRWHLIGSLQRNKVKYIAPFITSIQSIESLALYDEVERRAAQHNRTID 126
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILC-----RQKYQLNVEGLMCIPPAMGNP---KPH 173
++V E KSG+ ++ + F + + GLM + + +
Sbjct: 127 CLVEVYVAQEETKSGVPYDEVEAFFAALLDRQAEGNAHIRLRGLMGMATHTDSEAEIRAE 186
Query: 174 FYLLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L + K LSMGM+ D+ +A++ G+ VRIG+ I G R
Sbjct: 187 FAKLRGLFYRLKEGLMSQYPCFDTLSMGMSEDWSIALSEGSNMVRIGTAIMGPRAY 242
>gi|237744987|ref|ZP_04575468.1| proline synthetase associated protein [Fusobacterium sp. 7_1]
gi|229432216|gb|EEO42428.1| proline synthetase associated protein [Fusobacterium sp. 7_1]
Length = 223
Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats.
Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ Q I + V LVAV+K + I L GQ I ENK+Q
Sbjct: 1 MSIKTNVEEILQDI----KKYSPYPEKVKLVAVTKYSSVEDIEEFLGTGQDICGENKVQV 56
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K + K ++ FIG+LQ NKV I+ D+I +V++ A ++ + + S+
Sbjct: 57 IKDKIEYFKEKNKKIKWHFIGNLQKNKVKYIIDDVDLIHSVNKLSLAQEINKKAEQSSKI 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ V +++N E K G ++ K +I + LN+ G+M + P + + F
Sbjct: 117 MDVLLEINVYGEESKQGYSLDELKCDIIELQNLKNLNIIGVMTMAPFTDDEKILRMVFSE 176
Query: 177 LSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L +I E LT+LSMGM+ D+++A+ G+T +R+G+ IF
Sbjct: 177 LRKIRDELNKEYFNNNLTELSMGMSNDYKIALQEGSTFIRVGTKIF 222
>gi|295696449|ref|YP_003589687.1| alanine racemase domain protein [Bacillus tusciae DSM 2912]
gi|295412051|gb|ADG06543.1| alanine racemase domain protein [Bacillus tusciae DSM 2912]
Length = 249
Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats.
Identities = 69/232 (29%), Positives = 109/232 (46%), Gaps = 20/232 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS G ++ K +I + R V LVAVSK +D+ + + + G EN+LQ
Sbjct: 1 MSTGERIAEVKMRIARACARVGRDPSGVRLVAVSKYIDAARAKEWVQAGLTDLGENRLQV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK---QS 117
A++K L V FIG LQ+NKV ++ F + ++ R L+ + +
Sbjct: 61 AQEKLEALGS--GVTWHFIGHLQTNKVKAVIQHFAWLHSLDRPSLVDALARRFAEGPPEG 118
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN---VEGLMCIPPAMGNPKP-- 172
L V QVN E QKSG+ + DF+ + K + + + G M + PA+ +P+
Sbjct: 119 PPLKVLAQVNVAGEEQKSGVAREEIGDFLDYIQSKNRFSRWIMAGFMTMAPAVNDPEEVR 178
Query: 173 -HFYLLSEIARECKLT---------KLSMGMTRDFELAIASGATSVRIGSGI 214
F L ++ +LSMGM+ DFE+A+ GAT VR+G +
Sbjct: 179 GVFRELRQLRDRFGHHPVWRNRDNLELSMGMSGDFEVAVEEGATIVRLGRIL 230
>gi|256026886|ref|ZP_05440720.1| proline synthetase associated protein [Fusobacterium sp. D11]
gi|289764878|ref|ZP_06524256.1| proline synthetase associated protein [Fusobacterium sp. D11]
gi|289716433|gb|EFD80445.1| proline synthetase associated protein [Fusobacterium sp. D11]
Length = 223
Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats.
Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + I + V LVAV+K + I L GQ I ENK+Q
Sbjct: 1 MSIKTNVEEILEDI----KKYSPYPEKVKLVAVTKYSSVEDIEEFLETGQDICGENKVQV 56
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K + K ++ FIG+LQ NKV I+ D+I +V++ A ++ + + S+
Sbjct: 57 IKDKIEYFKEKNKKIKWHFIGNLQKNKVKYIIDDVDLIHSVNKLSLAQEINKKAEQSSKI 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ V +++N E K G ++ K +I + LN+ G+M + P + + F
Sbjct: 117 MDVLLEINVYGEESKQGYSLDELKCDIIKLQNLKNLNIIGVMTMAPFTDDEKILRMVFSE 176
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L +I E LT+LSMGM+ D+++A+ G+T +R+G+ IF
Sbjct: 177 LRKIRDELNKEYFNNSLTELSMGMSNDYKIALQEGSTFIRVGTKIF 222
>gi|325068581|ref|ZP_08127254.1| alanine racemase domain protein [Actinomyces oris K20]
Length = 267
Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats.
Identities = 65/211 (30%), Positives = 97/211 (45%), Gaps = 10/211 (4%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
A R + L+ VSK V +++R A + G ENK+QEA++K L +
Sbjct: 45 KRAGRDAADIRLLPVSKTVPEERLRTAFAAGITQMGENKVQEAQRKSENLAD-LGISWSV 103
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQ+NK + + D + + + A L + R L VY+QVN+ E K G+
Sbjct: 104 IGHLQTNKAKNVAAFADEFQALDSLRLAEALDRRLQAAGRGLDVYVQVNSSGEPSKFGLE 163
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR-ECKLTK-----L 189
P+ DF+ L V GLM + + + F ++ + + L
Sbjct: 164 PDDVADFLAALPAYSSLRVRGLMTLAAHTDDAARVRECFSIMRRLRDAALQAGTVGDGLL 223
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERPC 220
SMGM+ DFE AI G+T VR+G IFG R
Sbjct: 224 SMGMSGDFEAAIEGGSTCVRVGQAIFGARAT 254
>gi|170589287|ref|XP_001899405.1| Hypothetical UPF0001 protein F09E5.8 in chromosome II [Brugia
malayi]
gi|158593618|gb|EDP32213.1| Hypothetical UPF0001 protein F09E5.8 in chromosome II, putative
[Brugia malayi]
Length = 268
Score = 236 bits (604), Expect = 1e-60, Method: Composition-based stats.
Identities = 86/241 (35%), Positives = 126/241 (52%), Gaps = 20/241 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPK----DSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
+L + L++ +++IEN + A++ SLVAVSK S I+ GQ+ F EN
Sbjct: 24 ALVDNLRLIRRRIENVSKKAEQSPYWRGQKPSLVAVSKTKSSSLIQCCYDAGQMKFGENY 83
Query: 58 LQEAKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMI 114
+QE K L+ K +++ FIG++QSNK++++ + +ET+ +K AS+L E+
Sbjct: 84 IQELVDKAEALKSKCPNIRWHFIGTVQSNKIAKLAEIDTLSCVETICNKKHASMLEKEVA 143
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPA----MGN 169
K +R L V +QVNT E QK G P + R L G M I
Sbjct: 144 KHNRKLKVLVQVNTSKEKQKGGTTPEMAIELAEFIRIHCPSLKFGGFMTIGSFAHSVSET 203
Query: 170 PKPHFYLLSEIARE-CKLTK-------LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
P F L E+ + C+LT+ LSMGM+ DFE AI G+TSVR+GS IFG R +
Sbjct: 204 PNRDFIQLFEVRKRFCELTQENERDFALSMGMSDDFEAAIMLGSTSVRVGSAIFGHRLLK 263
Query: 222 T 222
T
Sbjct: 264 T 264
>gi|288800037|ref|ZP_06405496.1| pyridoxal phosphate enzyme, YggS family [Prevotella sp. oral taxon
299 str. F0039]
gi|288333285|gb|EFC71764.1| pyridoxal phosphate enzyme, YggS family [Prevotella sp. oral taxon
299 str. F0039]
Length = 225
Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats.
Identities = 64/210 (30%), Positives = 99/210 (47%), Gaps = 16/210 (7%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V LVAVSK ++ IR A GQ IF E++ +E K L D+Q FIG LQ+
Sbjct: 18 PLGVHLVAVSKFRPAEFIRAAYDAGQRIFGESQEKELSLKVEELP--VDIQWHFIGHLQT 75
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV I +IE+V K ++ + IK +R + + +++ E KSG+ P++
Sbjct: 76 NKVKYIARYISLIESVDSLKLLKEINKQAIKNNRVIDILLELRVAQEDTKSGLTPDECLA 135
Query: 145 FVIL--CRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIARECK---------LTKLS 190
+ + + + GLM + P F + ++ + K S
Sbjct: 136 LLEEGKWKSLSNVRICGLMTMASYCPDEQQIASEFTIAHQLFNKIKGEYFSDKEYFKYRS 195
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERPC 220
GM+ D+++AI GA VRIG+ IFGER
Sbjct: 196 WGMSGDYKIAIEHGANLVRIGTTIFGEREY 225
>gi|83944980|ref|ZP_00957346.1| hypothetical protein OA2633_10134 [Oceanicaulis alexandrii
HTCC2633]
gi|83851762|gb|EAP89617.1| hypothetical protein OA2633_10134 [Oceanicaulis alexandrii
HTCC2633]
Length = 231
Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats.
Identities = 101/220 (45%), Positives = 136/220 (61%), Gaps = 1/220 (0%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +I +A A R D + LVAVSK+ ++ L+ GQ IF EN++QEA+
Sbjct: 12 VAAARAEILNRIARAAKQAGRSADEIDLVAVSKVQPDDRVDAMLAAGQRIFGENRVQEAQ 71
Query: 63 KKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K+W R+ D+QLR IG LQSNK + +LFDVIET+ REK A L M K R
Sbjct: 72 KRWAGRRETYPDLQLRLIGPLQSNKADDACALFDVIETLDREKLAGALVKAMEKTGRRPA 131
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+Y+QVNTG E QK+G+ N+ +FV CR+ L VEGLMCIPP PHF LL+++A
Sbjct: 132 LYVQVNTGDEPQKAGLAVNECVEFVRHCRRDLDLPVEGLMCIPPVEEPAAPHFALLAKLA 191
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ +LSMGM+ DFEL + GATS+R+GS +FGER +
Sbjct: 192 ARADVARLSMGMSSDFELGVQLGATSMRVGSALFGEREAR 231
>gi|291543956|emb|CBL17065.1| pyridoxal phosphate enzyme, YggS family [Ruminococcus sp. 18P13]
Length = 229
Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats.
Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 11/224 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + +I + ++P++ V L+AV+K VD + VA+ CG + EN++QE +
Sbjct: 8 VRENYKRITDRIGEAMAKYRKPEEQVQLMAVTKTVDPALVNVAVECGVRLLGENRVQEYE 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K VQ FIG LQ+NKV ++ +I++V A+ + + + +
Sbjct: 68 SKKAQYDPRAQVQ--FIGQLQTNKVKYLIPEISMIQSVDSLHLANEVERIAARADKVQDI 125
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA- 181
++VN G E K GI + + +K L+V GLM IPP + + +F+ + ++
Sbjct: 126 LLEVNIGGEESKGGIPAEELHGLLEEAARKPHLHVCGLMTIPPKT-DVEKYFFRMQKLFI 184
Query: 182 -------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ D+ AI G+T VRIGS +FG R
Sbjct: 185 DISAENMDNIDMHVLSMGMSGDYVEAIKYGSTLVRIGSALFGAR 228
>gi|312879667|ref|ZP_07739467.1| alanine racemase domain protein [Aminomonas paucivorans DSM 12260]
gi|310782958|gb|EFQ23356.1| alanine racemase domain protein [Aminomonas paucivorans DSM 12260]
Length = 232
Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats.
Identities = 71/228 (31%), Positives = 119/228 (52%), Gaps = 12/228 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ +++I +A+ A R + L AV+K ++ + A +CG AEN++QEA
Sbjct: 3 SVRENVERVRERIARAALRAGRDPSEIRLAAVTKRHPAEAVLQAAACGVDWIAENRVQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF-L 120
+ K V +G LQ NKV + + +FD I TV ++ A + + + R +
Sbjct: 63 QGKRENCPG-VTVPWCLVGHLQRNKVRKALEVFDAIHTVDSQELAVSMERVLEEGQRTGV 121
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
PV ++VN E KSG+ P + + +L +EGL+ + P + +P+ F L
Sbjct: 122 PVLLEVNVSGEAAKSGVSPEGAEALAETVVSRCSRLRLEGLLAVGPLVDDPEAIRGAFRL 181
Query: 177 LSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L IA + + L LSMGM+ DFE+A+ G+T VR+G+ +FG R
Sbjct: 182 LGRIAGDLRRQLGLPLATLSMGMSDDFEIAVEEGSTLVRLGTALFGPR 229
>gi|315186193|gb|EFU19955.1| alanine racemase domain protein [Spirochaeta thermophila DSM 6578]
Length = 230
Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats.
Identities = 67/223 (30%), Positives = 101/223 (45%), Gaps = 17/223 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L +++ + A R + V ++AV+K+ + I A G +F EN+LQEA K
Sbjct: 12 LDEVRER----CVKAGRRPEEVRVMAVTKLHGPEAIADAYRAGIRLFGENRLQEAASKRE 67
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
D +L IG LQ NK + V LF I +V R L + LPV ++V
Sbjct: 68 AFP--PDAELHLIGHLQRNKARKAVELFSCIHSVDRIPLIEALEKAWGDREGRLPVLVEV 125
Query: 127 NTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAR 182
N E K G + + L V G M + P + + F L E+A
Sbjct: 126 NLSGEETKYGFRTEEEVAQALERLAASPALEVRGFMTMAPYTDDERVIRAVFGGLRELAS 185
Query: 183 ECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L +LSMGM+ D+ +AI G+T +R+G+ +FGER
Sbjct: 186 RMQKAFPSLPLAELSMGMSNDYPIAIEEGSTILRLGTVLFGER 228
>gi|222153416|ref|YP_002562593.1| hypothetical protein SUB1289 [Streptococcus uberis 0140J]
gi|222114229|emb|CAR42810.1| conserved hypothetical protein [Streptococcus uberis 0140J]
Length = 223
Score = 236 bits (603), Expect = 2e-60, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL + + + + + A R +DSVS++AV+K VDS R + G AEN++ +
Sbjct: 1 MSLKENKEAVFKAVNEATLSAGRSEDSVSIIAVTKYVDSDIARQLVDTGVSHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ + IGSLQ KV ++++ D + A + +
Sbjct: 61 FLDKYKALKDC-QLTWHLIGSLQRRKVKDVINYVDYFHALDSVSLAKEIQKRAE---HPI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K G P + + Q+ + GLM + P + F
Sbjct: 117 NCFLQVNVSGEESKHGFAPEEVSHVLDQLADYDQIRLIGLMTMAPFEADQSTIAEIFKET 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ + + T+LSMGM+ DF +AI GAT VRIG+ F
Sbjct: 177 NQLRQRLQAENRKNMPFTELSMGMSNDFPIAIQEGATFVRIGTSFF 222
>gi|326560147|gb|EGE10536.1| putative alanine racemase [Moraxella catarrhalis 103P14B1]
gi|326570756|gb|EGE20781.1| putative alanine racemase [Moraxella catarrhalis BC1]
gi|326573541|gb|EGE23504.1| putative alanine racemase [Moraxella catarrhalis 101P30B1]
Length = 236
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 102/228 (44%), Gaps = 16/228 (7%)
Query: 3 LGNKLQVFKQKIENSAILA------KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
L ++ KQ + + A RP L+AVSK I+ GQ F EN
Sbjct: 12 LLTNYRLIKQALNTANDQAVQMNPTHRPA---KLIAVSKTKPVAMIQTLFHQGQQDFGEN 68
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
LQEA K L + + +IGS+Q NK +I FD + T+ RE A L+ +
Sbjct: 69 YLQEALGKISQLSQLP-IIWHYIGSIQRNKTRDIAKHFDWVHTLEREIIAQRLNEQRA-G 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP-----AMGNPK 171
+ L V IQ+N E KSG P + + LN+ G+M IP A K
Sbjct: 127 MQPLNVLIQINIDDESSKSGCKPTELPTLIEQIINYKNLNLRGVMVIPSQQTVDAFARTK 186
Query: 172 PHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F ++ +SMGM+ D A+A G+T VR+G+ IFGER
Sbjct: 187 ELFDAMARRFDLPNWDTISMGMSGDMTQAVAHGSTMVRVGTAIFGERD 234
>gi|281205000|gb|EFA79194.1| hypothetical protein PPL_08020 [Polysphondylium pallidum PN500]
Length = 278
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 85/235 (36%), Positives = 111/235 (47%), Gaps = 24/235 (10%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + K KI + V+LVAVSK S IR G F EN +QE
Sbjct: 51 ELLERYNAIKSKIT--------DPN-VTLVAVSKTKPSFMIRELYENGHRHFGENYIQEL 101
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIKQSRF 119
+ K L D++ FIGS+QSNK+ ++ V V+ETV + A + S+
Sbjct: 102 ELKSKELEDLKDIKWHFIGSVQSNKIKQLGSVLNLAVVETVEKSSAADKFAKCFSNHSQP 161
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILC----RQKYQLNVEGLMCIP-PAMGNPKPHF 174
L + +QVNT E KSG PN+ D V + K L GLM I P +P F
Sbjct: 162 LEIMVQVNTSGEQSKSGCEPNEVVDIVKHIISDEQCKKSLKFSGLMTIGSPNATEDQPDF 221
Query: 175 YLLSE----IARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L E I+++ L LSMGM+ DF AI G+TSVR+GS IFGER
Sbjct: 222 KKLFECRDSISKQLGLPIESIALSMGMSHDFVEAIKFGSTSVRVGSAIFGERDYS 276
>gi|315609071|ref|ZP_07884041.1| YggS family pyridoxal phosphate enzyme [Prevotella buccae ATCC
33574]
gi|315249275|gb|EFU29294.1| YggS family pyridoxal phosphate enzyme [Prevotella buccae ATCC
33574]
Length = 222
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 60/231 (25%), Positives = 102/231 (44%), Gaps = 26/231 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ +L + V LVAVSK +++I A + GQ +F E+ QE
Sbjct: 4 DVAQRLHTVL----------GSLPEGVRLVAVSKYHPAERIFEAYNEGQRLFGESHEQEL 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L + D++ FIG LQ+NKV I +IE V + + + + R +
Sbjct: 54 RHKVEALPR--DIEWHFIGHLQTNKVKYIAPYIAMIEAVDSLRLLREIEKQAARCDRTIR 111
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
V ++++ E K G+ + + + R+ + + GLM + + F L
Sbjct: 112 VLLELHIAEEATKYGLSLDDCRALLDGGEWREMTHVQICGLMMMASNTDDKLRIAREFDL 171
Query: 177 LSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ E K + S GM+ D+ +A+ G+T VR+G+GIFGER
Sbjct: 172 AARFFDEVKARHFAGNDNFCERSWGMSHDYRIAVDHGSTLVRVGTGIFGER 222
>gi|302874635|ref|YP_003843268.1| alanine racemase domain-containing protein [Clostridium
cellulovorans 743B]
gi|307690753|ref|ZP_07633199.1| alanine racemase domain-containing protein [Clostridium
cellulovorans 743B]
gi|302577492|gb|ADL51504.1| alanine racemase domain protein [Clostridium cellulovorans 743B]
Length = 220
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + + +I PKD+V +VA SK ++I A + G F ENK+QE
Sbjct: 1 MTIEENICALRNEI---------PKDTV-IVAASKTRTLEEIEKAYNAGLRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + D+ FIG LQSNKV +V +I ++ + + +
Sbjct: 51 FVEKYE--KCNLDINWHFIGHLQSNKVKYLVGKNVLIHSIDSIALLNEIEKKSQALGIET 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM--GNPKPHFYLLS 178
V IQVN E +K G + K+ + + V+GLM I P + +F +
Sbjct: 109 NVLIQVNIAKEQRKYGFYEEELKEVLKTVEGFTNIKVKGLMTILPIESHEENRKYFRKVK 168
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+I E K + LSMGM+ D+ A+ G +R+G IFG+R
Sbjct: 169 DIFDEIKDINYINSEMKYLSMGMSSDYIDAVKEGTNMIRVGEAIFGKRNY 218
>gi|238798616|ref|ZP_04642091.1| alanine racemase [Yersinia mollaretii ATCC 43969]
gi|238717502|gb|EEQ09343.1| alanine racemase [Yersinia mollaretii ATCC 43969]
Length = 198
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 67/196 (34%), Positives = 90/196 (45%), Gaps = 11/196 (5%)
Query: 34 SKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV---QLRFIGSLQSNKVSEI 90
SK I A++ GQ F EN +QE K L + + + FIG LQSNK +
Sbjct: 2 SKTKPVTAIEEAIAAGQYAFGENYVQEGVDKIHYLANKPHIPPLEWHFIGPLQSNKSRLV 61
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
F TV R K A LS + L V IQVN E KSGI +
Sbjct: 62 AENFAWCHTVDRLKIAQRLSAQRPADMPALNVLIQVNISDEQSKSGIALAELPALAANIS 121
Query: 151 QKYQLNVEGLMCIPPAMGNPKPHFYLLSEI--------ARECKLTKLSMGMTRDFELAIA 202
+ L++ GLM IP + + + ++ A+ ++ LSMGMT D AIA
Sbjct: 122 ELPNLHLRGLMAIPAPETDYQRQLAVFEQMNQAFLTLKAQYPQMDTLSMGMTDDMPAAIA 181
Query: 203 SGATSVRIGSGIFGER 218
+G+T VRIG+ IFG R
Sbjct: 182 AGSTLVRIGTAIFGAR 197
>gi|303236490|ref|ZP_07323077.1| pyridoxal phosphate enzyme, YggS family [Prevotella disiens
FB035-09AN]
gi|302483341|gb|EFL46349.1| pyridoxal phosphate enzyme, YggS family [Prevotella disiens
FB035-09AN]
Length = 223
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 26/231 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L K + + V L+A+SK ++ + A + GQ IF E+ QE
Sbjct: 3 DVATNLHEVKDGL----------PEGVRLIAISKFHPNEYLEAAYNEGQRIFGESHEQEL 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L K D++ FIG LQ+NKV I +IE V K ++ + K +R +
Sbjct: 53 SAKASTLPK--DIEWHFIGHLQTNKVKYIAPYISMIEAVDSFKLLKEINKQAAKHNRIIN 110
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVIL--CRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ ++++ E+ K G + + + R+ +++ GLM + + +
Sbjct: 111 ILLELHIAEEVSKYGFKIEECRQLLEEGAWRELKNVHISGLMMMASNTDDEQQIRKEMTQ 170
Query: 177 LSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ E K + S GM+ D+ +AI +T +R+G+ IFG R
Sbjct: 171 AANFFDEVKEKYFANDPAFKERSWGMSNDYPIAIECRSTMIRVGTKIFGPR 221
>gi|260435963|ref|ZP_05789933.1| pyridoxal phosphate enzyme, YggS family [Synechococcus sp. WH 8109]
gi|260413837|gb|EEX07133.1| pyridoxal phosphate enzyme, YggS family [Synechococcus sp. WH 8109]
Length = 255
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 69/208 (33%), Positives = 102/208 (49%), Gaps = 5/208 (2%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
A+ A RP S L+AVSK + +R GQ F E+++QEA K L + +++
Sbjct: 46 ALQAARPSSS-RLLAVSKGHPAASVRCVAELGQCDFGESRVQEALPKQEEL-IDLNLRWH 103
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
FIG LQSNKV +V FDVI +V A +S +++ R V +QV + K G+
Sbjct: 104 FIGRLQSNKVRPVVKAFDVIHSVDSLALAERVSRIAVEEGRQPEVLLQVKLHPDPSKGGL 163
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLSEIARECKLTKLSMGMT 194
+ + L + GLM + P G K F +A L + SMGM+
Sbjct: 164 SAGELGAIWSDLQALPGLRISGLMTMAPLDMAIGQRKELFSDCRALADRLALAECSMGMS 223
Query: 195 RDFELAIASGATSVRIGSGIFGERPCQT 222
D++ A +G+T +RIGS +FG R T
Sbjct: 224 TDWKEAAEAGSTWLRIGSVLFGPRLVST 251
>gi|323345163|ref|ZP_08085387.1| cell division protein YlmE [Prevotella oralis ATCC 33269]
gi|323094433|gb|EFZ37010.1| cell division protein YlmE [Prevotella oralis ATCC 33269]
Length = 224
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 62/208 (29%), Positives = 99/208 (47%), Gaps = 16/208 (7%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ V LVAVSK + I A + GQ +F E+ QE KK L K D++ FIG LQ+
Sbjct: 17 PEGVRLVAVSKFHPDEYIEAAYAEGQRVFGESHEQELSKKAATLPK--DIEWHFIGHLQT 74
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV IV +I+ V K + + + R + V ++++ E K G D
Sbjct: 75 NKVKHIVPYISMIDAVDSLKLLREIDKQAARCGRVIRVMLELHIAEEETKYGFSRQDCLD 134
Query: 145 FVI--LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK---------LTKLS 190
+ R+ + + + GLM + + + F +++ RE K + S
Sbjct: 135 MLAGGAWRELHNVQICGLMMMASNVDDEAQIAKEFDEAADLFREVKQRFFADDDAFCERS 194
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D+ +A+ G+T VR+G+GIFG R
Sbjct: 195 WGMSHDYRIAVKHGSTMVRVGTGIFGPR 222
>gi|318042389|ref|ZP_07974345.1| hypothetical protein SCB01_11801 [Synechococcus sp. CB0101]
Length = 224
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 64/224 (28%), Positives = 100/224 (44%), Gaps = 13/224 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S +L + ++ S L+AVSK + IR GQ F E++LQEA
Sbjct: 5 SAAERLAAIRAQL----------PASTQLLAVSKGHPAAAIRELAGLGQRSFGESRLQEA 54
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + FIG LQ+NKV ++ F + +V A ++ ++
Sbjct: 55 APKQDELADLPGLDWHFIGRLQANKVRPVLQRFAWLHSVDSLPLAERVARIAQEEGVSPK 114
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLS 178
V +QV + K G P + + L + GLM + P + F+ +
Sbjct: 115 VLLQVKLRPDPAKGGFEPEALRQAWPQLQALPALQLVGLMTMAPLGLDAAERQSLFHDCA 174
Query: 179 EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ARE L +LSMGM+ D+ A A+G++ VRIGS +FG +P
Sbjct: 175 ALARELGLEQLSMGMSGDWREAAAAGSSWVRIGSALFGPKPLSA 218
>gi|317495980|ref|ZP_07954342.1| alanine racemase domain-containing protein [Gemella moribillum
M424]
gi|316913884|gb|EFV35368.1| alanine racemase domain-containing protein [Gemella moribillum
M424]
Length = 225
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 23/230 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ- 59
M++ N L+ I+N + R + ++L+AV+K V ++++ A G FAEN+
Sbjct: 1 MNVKNNLEKINNDIKNICQKSGRNFEDITLIAVTKYVGDERVKEAQEAGVHDFAENRAVN 60
Query: 60 --EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K+K++ IGSLQ+ KV + ++ D + RE A +
Sbjct: 61 YIERKEKFLE------ATWHLIGSLQTRKVRDAINKVDYFHALDRESLAVEIEKRAE--- 111
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
+ ++QVNT E K G++P +FV + ++ V GLM + P + + + F
Sbjct: 112 HVINCFVQVNTSGEESKHGLIPEAVLEFVKGLEKYPKIRVVGLMTMAPFLEDEATLRSCF 171
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L E+ E K LSMGM+ D+E+AI GAT +RIG+ + G
Sbjct: 172 RKLRELRDEIKGLCLEYAPCKFLSMGMSNDYEIAIEEGATHIRIGTALVG 221
>gi|237741593|ref|ZP_04572074.1| proline synthetase associated protein [Fusobacterium sp. 4_1_13]
gi|294785799|ref|ZP_06751087.1| pyridoxal phosphate enzyme, YggS family [Fusobacterium sp. 3_1_27]
gi|229429241|gb|EEO39453.1| proline synthetase associated protein [Fusobacterium sp. 4_1_13]
gi|294487513|gb|EFG34875.1| pyridoxal phosphate enzyme, YggS family [Fusobacterium sp. 3_1_27]
Length = 223
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + I + V LVAV+K + I L GQ I ENK+Q
Sbjct: 1 MSIKTNVEEILEDI----KKYSPYPEKVKLVAVTKYSSVEDIEEFLKTGQNICGENKVQV 56
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K + K ++ FIG+LQ NKV I+ D+I +V++ A ++ + + +
Sbjct: 57 IKDKIEYFKEKNKKIKWHFIGNLQKNKVKYIIDDVDLIHSVNKLSLAQEINKKAEQSGKI 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ V +++N E K G ++ K +I + LN+ G+M + P + + F
Sbjct: 117 MDVLLEINVYGEESKQGYSLDELKCDIIELQNLKNLNIIGVMTMAPFTDDEKILRMVFSE 176
Query: 177 LSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L +I E LT+LSMGM+ D+++A+ G+T +R+G+ IF
Sbjct: 177 LRKIKGELNKEYFNNNLTELSMGMSNDYKIALQEGSTFIRVGTKIF 222
>gi|160899144|ref|YP_001564726.1| alanine racemase domain-containing protein [Delftia acidovorans
SPH-1]
gi|160364728|gb|ABX36341.1| alanine racemase domain protein [Delftia acidovorans SPH-1]
Length = 283
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 70/226 (30%), Positives = 104/226 (46%), Gaps = 11/226 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ L + ++ + A R SV L+ VSK +R+A + G + ENK+QEA
Sbjct: 37 RHNLATVQARMAAACRRAGRDPASVRLLPVSKTKPESSLRLAHAAGCRMLGENKVQEAFG 96
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
KW ++ D+Q IG LQ+NK + + + + A L + + R L V+
Sbjct: 97 KWEAMQDLADLQWSVIGHLQTNKARLVARFASEFQALDNLRVAEALDRRLQAEGRALDVF 156
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+QVNT E K G+ P++ + FV L V GLM + + + R
Sbjct: 157 VQVNTSGEASKYGLPPDEVQGFVQALPAFSALRVRGLMTLALFSSEAERVRQCFVLLRRL 216
Query: 184 -----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +LSMGM+ DFE+AI GAT VR+G IFG R
Sbjct: 217 RDQLRQSAPAGISLDELSMGMSGDFEIAIEEGATVVRVGQAIFGAR 262
>gi|166368333|ref|YP_001660606.1| hypothetical protein MAE_55920 [Microcystis aeruginosa NIES-843]
gi|166090706|dbj|BAG05414.1| hypothetical protein MAE_55920 [Microcystis aeruginosa NIES-843]
Length = 219
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 19/227 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++++ + + S L+AVSK V S IR A G FAE+KLQE
Sbjct: 1 MTIASRIESIRLTL----------PPSTRLIAVSKQVSSDYIRQAYRAGVRDFAESKLQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L+ D+ FIG LQ+NK +++ FD+I ++ K A L +
Sbjct: 51 AISKQQELKDLPDIYWHFIGHLQANKARKVLESFDLIHSLDSLKLAQRLDRLAAELEINP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLL 177
V +QV + K G ++ + QL ++GLM I P + G F
Sbjct: 111 QVLLQVKVIPDPDKFGWDTDELIADIPALVNCQQLKIQGLMTILPQGLSAGEKLAAFEKT 170
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
S++A+ + L LSMGM+ D+ LAI +GAT +R+G+ IFG+R
Sbjct: 171 SDLAQIIENSSSLCLPHLSMGMSNDYPLAIKAGATLIRVGTSIFGDR 217
>gi|325694120|gb|EGD36038.1| cell division protein YlmE [Streptococcus sanguinis SK150]
Length = 223
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ E ++ IGSLQ KV ++++ D + K A + +
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDKRAE---HVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G + + + + + + + GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFLIEELEVVLPELEKLENVQIVGLMTMAPFEASDEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|20089382|ref|NP_615457.1| hypothetical protein MA0493 [Methanosarcina acetivorans C2A]
gi|19914277|gb|AAM03937.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 216
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 75/230 (32%), Positives = 116/230 (50%), Gaps = 24/230 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ ++I S +LV V+K ++ ++I A+ G I EN++QE
Sbjct: 1 MPVYENTKLILEEI-----------GSTTLVCVTKTIEPERINEAIRAGAPIIGENRVQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K + + IG LQ+NKV + V LFDVI+++ K + +
Sbjct: 50 YEDKRDDI---LPCETHLIGHLQTNKVKKAVHLFDVIQSIDSMKIIRDIDRRARDIGKVQ 106
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM--GNPKPHFYLLS 178
VY+QVN G E QK G P++ K+ + R + VEGLMCIPP + +P+F +
Sbjct: 107 KVYLQVNIGNEPQKYGFGPDEIKNAITEIRSLRNVRVEGLMCIPPFVPPEQTRPYFKKMK 166
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E K + LSMGM+ D+ +AI GAT VR+GS IFG+R
Sbjct: 167 ALFDEMKQENRDNIDIRTLSMGMSGDYRIAIEEGATMVRVGSAIFGKREY 216
>gi|255084663|ref|XP_002508906.1| predicted protein [Micromonas sp. RCC299]
gi|226524183|gb|ACO70164.1| predicted protein [Micromonas sp. RCC299]
Length = 249
Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats.
Identities = 77/224 (34%), Positives = 101/224 (45%), Gaps = 25/224 (11%)
Query: 16 NSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQ 75
S A LVAVSK +++R GQ F EN +QE +K + D
Sbjct: 20 RSTARASTNPA--RLVAVSKTKPVEQLRECYDAGQRCFGENYVQEIVEKAPQMP--PDTV 75
Query: 76 LRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLE----MIKQSRF----LPVYI 124
FIG LQSNKV + V V+ETV K A+ L+ + +++R L V +
Sbjct: 76 WHFIGHLQSNKVKALVTGVPSLAVVETVDTVKLANKLNTAVGEFLEERARVGAGKLGVMV 135
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPH-FYLLSEIAR 182
QVNT E K G+ PN R + L GLM I +P F L+
Sbjct: 136 QVNTSGEESKFGVEPNDCLPLARHIRDECSNLAFRGLMTIGMPDYTSRPENFQTLAACRD 195
Query: 183 EC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E K +LSMGM+ DFE AI G+ +VR+GS IFG R
Sbjct: 196 EVCAGLGLDAKDVELSMGMSGDFESAIEMGSDNVRVGSTIFGAR 239
>gi|320449859|ref|YP_004201955.1| pyridoxal phosphate enzyme, YggS family [Thermus scotoductus SA-01]
gi|320150028|gb|ADW21406.1| pyridoxal phosphate enzyme, YggS family [Thermus scotoductus SA-01]
Length = 211
Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats.
Identities = 72/212 (33%), Positives = 100/212 (47%), Gaps = 8/212 (3%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKW 65
L + +E + A R V LVAV+K ++IR L G E+++QEA KK
Sbjct: 3 LPEVLEAMEAACRRAGRDPRGVRLVAVTKGRSVEEIREKVLRYGSFPLGESRVQEALKKM 62
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L E IG LQ NK F +I ++ + A L K+ L V ++
Sbjct: 63 ELLEAE----WHLIGPLQRNKAK-FAPRFALIHSLDSLRLAEALDRVGEKEGVRLKVLVE 117
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLSEIARE 183
VN G E QK G + + + V R+ L V G M +PP +P F LSE+A
Sbjct: 118 VNLGREPQKHGFLEEELPEAVARVREMAHLEVLGFMTVPPMGPEAVVRPIFRRLSELADR 177
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L + SMGM+ DF +AI GAT VR+G +F
Sbjct: 178 YGLPERSMGMSDDFPIAIEEGATLVRVGRALF 209
>gi|146318137|ref|YP_001197848.1| hypothetical protein [Streptococcus suis 05ZYH33]
gi|146320324|ref|YP_001200034.1| TIM-barrel fold family protein [Streptococcus suis 98HAH33]
gi|253751322|ref|YP_003024463.1| hypothetical protein SSUSC84_0419 [Streptococcus suis SC84]
gi|253753223|ref|YP_003026363.1| hypothetical protein SSU0435 [Streptococcus suis P1/7]
gi|253755046|ref|YP_003028186.1| hypothetical protein SSUBM407_0422 [Streptococcus suis BM407]
gi|145688943|gb|ABP89449.1| Predicted enzyme with a TIM-barrel fold [Streptococcus suis
05ZYH33]
gi|145691130|gb|ABP91635.1| Predicted enzyme with a TIM-barrel fold [Streptococcus suis
98HAH33]
gi|251815611|emb|CAZ51197.1| conserved hypothetical protein [Streptococcus suis SC84]
gi|251817510|emb|CAZ55254.1| conserved hypothetical protein [Streptococcus suis BM407]
gi|251819468|emb|CAR44987.1| conserved hypothetical protein [Streptococcus suis P1/7]
gi|292557895|gb|ADE30896.1| Predicted enzyme with a TIM-barrel fold [Streptococcus suis GZ1]
gi|319757607|gb|ADV69549.1| TIM-barrel fold family protein [Streptococcus suis JS14]
Length = 223
Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 97/226 (42%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ + +A A RP +SV ++AV+K VDS ++ G EN++ +
Sbjct: 1 MNFQKNKDAIFSAVAKAAEKAGRPSESVKVIAVTKYVDSSIANQLVNTGITHIGENRVDQ 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L + + IG+LQ KV +I+ D + K A + K +
Sbjct: 61 FLEKYNALADK-QLTWHLIGTLQRRKVKDIIPFVDYFHALDSVKLAQEIDKRATK---IV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLL 177
++QVN E K G ++ + + + GLM + P F +
Sbjct: 117 KCFLQVNVSGEESKHGFAVSEIDAALAEISLLENIELVGLMTMAPIDATDDELDEIFSKM 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
EI E T+LSMGM+ DFE AIA GAT VRIGS F
Sbjct: 177 QEIQEELATRNLPRMPFTELSMGMSGDFERAIAHGATYVRIGSAFF 222
>gi|327469025|gb|EGF14497.1| cell division protein YlmE [Streptococcus sanguinis SK330]
Length = 223
Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ E ++ IGSLQ KV ++++ D + K A + +
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDKRAQ---HVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G + + + + + + + GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFLIEELEVVLPELEKLENVQIVGLMTMAPFEASHEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|219129146|ref|XP_002184757.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403866|gb|EEC43816.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 250
Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats.
Identities = 75/244 (30%), Positives = 113/244 (46%), Gaps = 28/244 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L+ + +I+ + + LVAVSK + ++ A G +F EN QE
Sbjct: 10 DVARNLRDVQDQIDQACRTHAIESTRIRLVAVSKTKPIELLQQAYDAGCRVFGENYAQEL 69
Query: 62 KKKWIPLRKEWD----VQLRFIGSLQSNKVSEIVSLF------------DVIETVSREKT 105
K L + V FIG LQSNK + ++ F IETV+ K
Sbjct: 70 ADKVPLLNQHDGNNDTVSWHFIGGLQSNKCNMLLKPFLEQAPNGPTVANLTIETVATVKL 129
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIP 164
A+ L+ + + + L +++QVNT E KSGI P + Q +L ++GLM I
Sbjct: 130 ANKLN-HAVPEPQTLKIFVQVNTSGEDSKSGIEPAECVALCRHVAQECPRLQLQGLMTIG 188
Query: 165 PAMGNPKPHFYLLSEIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFG 216
F +L ++ R+ + +LSMGM+ DF AIA+GAT+VR+GS IFG
Sbjct: 189 AVGDLS--CFDVLVDLRRKVAIALERDTDDLELSMGMSGDFVQAIAAGATNVRVGSTIFG 246
Query: 217 ERPC 220
R
Sbjct: 247 ARNY 250
>gi|327458763|gb|EGF05111.1| cell division protein YlmE [Streptococcus sanguinis SK1057]
Length = 223
Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ E ++ IGSLQ KV ++++ D + K A + +
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDKRAE---HVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G + + + + + + + GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFLIEELEVVLPELEKLENVQIVGLMTMAPFEASHEELNQMFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|19703896|ref|NP_603458.1| proline synthetase associated protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|19714060|gb|AAL94757.1| Proline synthetase associated protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 223
Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats.
Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + I + V LVAV+K + I L GQ I ENK+Q
Sbjct: 1 MSIKTNVEEILEDI----KKYSPYPEKVKLVAVTKYSSVEDIEKFLETGQNICGENKVQV 56
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K + K ++ FIG+LQ NKV I+ D+I +V++ A ++ + + S+
Sbjct: 57 IKDKIEYFKEKNKKIKWHFIGNLQKNKVKYIIDDVDLIHSVNKLSLAQEINKKAEQSSKI 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ V +++N E K G ++ K +I + LN+ G+M + P + + F
Sbjct: 117 MDVLLEINVYGEESKQGYSLDELKCDIIELQNLKNLNIIGVMTMAPFTDDEKILRMVFSE 176
Query: 177 LSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L +I E LT+LSMGM+ D+++A+ G+T +R+G+ IF
Sbjct: 177 LRKIKDELNKEYFNNNLTELSMGMSNDYKIALQEGSTFIRVGTKIF 222
>gi|328945578|gb|EGG39729.1| cell division protein YlmE [Streptococcus sanguinis SK1087]
Length = 223
Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 108/226 (47%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A R KDSV+++AV+K VD + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAHRLKDSVNIIAVTKYVDCETTQELARTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ E ++ IGSLQ KV ++++ D + K A + +
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDKRAE---HVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G + + + + + + + GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFLIEELEVVLPELEKLENVQIVGLMTMAPFEASHEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|288926315|ref|ZP_06420239.1| pyridoxal phosphate enzyme, YggS family [Prevotella buccae D17]
gi|288336920|gb|EFC75282.1| pyridoxal phosphate enzyme, YggS family [Prevotella buccae D17]
Length = 222
Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats.
Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 26/231 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ +L + V LVAVSK +++I A + GQ +F E+ QE
Sbjct: 4 DVAQRLHTVL----------GSLPEGVRLVAVSKYHPTERIFEAYNEGQRLFGESHEQEL 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L + D++ FIG LQ+NKV I +IE V + + + + R +
Sbjct: 54 RHKVEALPR--DIEWHFIGHLQTNKVKYIAPYIAMIEAVDSLRLLREIEKQAARCDRTIR 111
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
V ++++ E K G+ + + + R+ + + GLM + + F L
Sbjct: 112 VLLELHIAEEATKYGLSLDDCRALLDGGEWREMTHVQICGLMMMASNTDDKLRIAREFDL 171
Query: 177 LSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ E K + S GM+ D+ +AI G+T VR+G+GIFGER
Sbjct: 172 AARFFDEVKARHFAGNDNFCERSWGMSHDYRIAIDHGSTLVRVGTGIFGER 222
>gi|125717512|ref|YP_001034645.1| pyridoxal 5'-phosphate dependent enzymes class III [Streptococcus
sanguinis SK36]
gi|125497429|gb|ABN44095.1| PyridoxaL 5'-phosphate Dependent Enzymes class III, putative
[Streptococcus sanguinis SK36]
gi|324993405|gb|EGC25325.1| cell division protein YlmE [Streptococcus sanguinis SK405]
gi|324995283|gb|EGC27195.1| cell division protein YlmE [Streptococcus sanguinis SK678]
gi|327461679|gb|EGF08010.1| cell division protein YlmE [Streptococcus sanguinis SK1]
gi|327489532|gb|EGF21325.1| cell division protein YlmE [Streptococcus sanguinis SK1058]
gi|332366084|gb|EGJ43840.1| cell division protein YlmE [Streptococcus sanguinis SK1059]
Length = 223
Score = 235 bits (601), Expect = 3e-60, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ E ++ IGSLQ KV ++++ D + K A + +
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDKRAE---HVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G + + + + + + + GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFLIEELEVVLPELEKLENVQIVGLMTMAPFEASHEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|221064850|ref|ZP_03540955.1| alanine racemase domain protein [Comamonas testosteroni KF-1]
gi|220709873|gb|EED65241.1| alanine racemase domain protein [Comamonas testosteroni KF-1]
Length = 243
Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats.
Identities = 79/238 (33%), Positives = 109/238 (45%), Gaps = 17/238 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N L +I + A RP SV L+AVSK + +R A+ GQ F EN +QEA
Sbjct: 3 TIENNLGQIHARIAAACASASRPVTSVQLLAVSKTFGADAVREAMLAGQRSFGENYIQEA 62
Query: 62 KKKWIP-----LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+K L +Q IG +QSNK + FD +TV R K A LS + +
Sbjct: 63 VEKIAAVRAMQLAGAEALQWHCIGPIQSNKTRLVAENFDWAQTVDRLKIAERLSAQRPQG 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY- 175
L V IQVN KSG++ Q + + L + G+M IP + +
Sbjct: 123 MVRLNVCIQVNVDGGATKSGVLAEQALELAEAMVKLPNLQLRGIMSIPDDTPDFEAQCAV 182
Query: 176 --LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ I K LSMGMT D E A+A+G+T VR+GSG+FG R T
Sbjct: 183 HKRAASIFDAIKSSGLAGLEHFDTLSMGMTGDLEAAVAAGSTMVRVGSGVFGRRTYST 240
>gi|145507578|ref|XP_001439744.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406939|emb|CAK72347.1| unnamed protein product [Paramecium tetraurelia]
Length = 226
Score = 235 bits (600), Expect = 3e-60, Method: Composition-based stats.
Identities = 72/228 (31%), Positives = 107/228 (46%), Gaps = 16/228 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L LQ Q I ++ V+LVAVSK + I+ A GQ F EN + E
Sbjct: 5 LQQNLQKVLQTIVKASETTN---KQVTLVAVSKTKPVELIKEAYEGGQKHFGENYVNELI 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L D+ FIG LQ+NKVS I + + I++V K A + K R +
Sbjct: 62 EKAPLLPN--DISWHFIGHLQTNKVSTIMKIQNLEFIQSVDSLKLAQKIEKHCEKLGRNI 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV-ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+++Q+ E K+G ++ K + + + + + GLM I P K F L +
Sbjct: 120 NIFVQIKLSEEESKTGAEIDEAKLIIQEIITKFKFIKLIGLMTIGPIGN--KEIFQQLVD 177
Query: 180 IAR------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+A+ + LSMGM+ D+ AI GA VR+GS IFGER +
Sbjct: 178 LAKKFENEFNLQPLNLSMGMSGDYLDAIKYGADYVRVGSAIFGERNVK 225
>gi|316964562|gb|EFV49608.1| pyridoxal phosphate enzyme, YggS family [Trichinella spiralis]
Length = 256
Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats.
Identities = 78/250 (31%), Positives = 108/250 (43%), Gaps = 36/250 (14%)
Query: 2 SLGNKLQVFKQKIENS------AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAE 55
++ + + +I + A+ LVAVSK I A + GQ F E
Sbjct: 4 AVQRNIVAVQSQITAAWNCTDPALRFGSIP---RLVAVSKRKPVVDICAAYAAGQRHFGE 60
Query: 56 NKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLL 109
N +QE +K L D++ FIG LQ NKV ++ V V+ETV K A L
Sbjct: 61 NYVQELIEKANDEQLLVACPDIRWHFIGHLQLNKVRKLIENVPNLHVVETVDSVKLAETL 120
Query: 110 SLEMIKQSRF-------LPVYIQVNTGYEIQKSGIMPNQTKDFVI-LCRQKYQLNVEGLM 161
+ + R + V +QVNT EIQK G P Q + + L + GLM
Sbjct: 121 NRVA--RGRVDQTLLGKINVMLQVNTSGEIQKHGCEPEQVLQLARMVVQDCPFLQLIGLM 178
Query: 162 CIPPAM---GNPKPHFYLLSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRI 210
I A + F L +I E +LSMGM+ DF+ AI G++SVR+
Sbjct: 179 TIGTASSCAEVARGEFSKLFQIRNQICTDLDWEVGQLELSMGMSNDFQEAICCGSSSVRV 238
Query: 211 GSGIFGERPC 220
GS IFG R
Sbjct: 239 GSAIFGSRDA 248
>gi|289664572|ref|ZP_06486153.1| hypothetical protein XcampvN_16238 [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 230
Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats.
Identities = 69/202 (34%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ V L+AVSK ++ + + GQ F EN +QEA+ K LR ++ IG LQS
Sbjct: 22 RTDVRLLAVSKTKPAEAVAGLAAQGQRAFGENYVQEAEAKIAQLRA-LGLEWHLIGHLQS 80
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK FD ++TV R K LL+ L V IQ+N E K G P
Sbjct: 81 NKAELASQCFDWVQTVDRAKLIPLLARHRPDDRAPLNVLIQLNIDDEDSKHGCAPEAIDS 140
Query: 145 FVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIARECK-----LTKLSMGMTRD 196
+ +L + GLM IP P + F + + + K + LSMGM+ D
Sbjct: 141 LAEAIALQPRLQLRGLMTIPAPFPEQARRQAAFTRMQALFEQLKTRHRQVDTLSMGMSAD 200
Query: 197 FELAIASGATSVRIGSGIFGER 218
F AIA+GAT VR+G+ +FG R
Sbjct: 201 FAEAIAAGATMVRVGTALFGAR 222
>gi|167586211|ref|ZP_02378599.1| hypothetical protein BuboB_12783 [Burkholderia ubonensis Bu]
Length = 254
Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats.
Identities = 76/231 (32%), Positives = 109/231 (47%), Gaps = 10/231 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L+ ++I ++A A R +V+L+AVSK + +R A + GQ F EN +Q
Sbjct: 23 MSDLAVRLESVHRRIADAARAAGRAPAAVTLLAVSKTFPADAVRAAHAAGQRAFGENYVQ 82
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L ++ FIG LQSNK + FD + ++ R K A L+ +
Sbjct: 83 ESIDKIDALADLRAALEWHFIGPLQSNKTRPVAERFDWVHSIDRLKIAQRLAEQRPAHLP 142
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---Y 175
L V +QVN E KSG+ P + L + GLM IP G+
Sbjct: 143 PLNVCVQVNISGEASKSGVAPADVAEVAHAVAALPSLRLRGLMAIPEPAGDADALRAPHR 202
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + L LSMGM+ D E A+ GAT VR+G+ IFG R
Sbjct: 203 ALRALFDALRADGLPLDTLSMGMSADLEAAVLEGATIVRVGTAIFGARDYS 253
>gi|299472696|emb|CBN79867.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 252
Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats.
Identities = 78/241 (32%), Positives = 114/241 (47%), Gaps = 27/241 (11%)
Query: 3 LGNKLQVFKQKIENS--AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ + L+ ++++E A +P LVAVSK + ++ A GQ IF EN QE
Sbjct: 18 IADNLEAVRKRVEEVTGEGEAGKPV--PRLVAVSKTKPLENLQDAYDAGQRIFGENYAQE 75
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMI--K 115
K + DV FIG LQSNK + V V+ET+ K A+ L + +
Sbjct: 76 LIDKSPQMPD--DVVWHFIGHLQSNKAKALVAGVPNLAVLETLDTVKLANKLQSACVSSE 133
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR----QKYQLNVEGLMCIPPAMGNPK 171
+ R L VY+Q++T E K+GI + + L R L ++GLM I
Sbjct: 134 RKRPLGVYLQIDTSGEDSKAGIYHSDLDACLSLARHLKDNCPALELKGLMTIGAPGDM-- 191
Query: 172 PHFYLLSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER--PCQ 221
F L+ E + +LSMGM+ D+E AI G+T+VR+GS IFG R P +
Sbjct: 192 ECFDRLNACRDAVAGGLGMEAQALELSMGMSGDYEEAIRRGSTNVRVGSTIFGARFYPNK 251
Query: 222 T 222
T
Sbjct: 252 T 252
>gi|298373203|ref|ZP_06983193.1| pyridoxal phosphate enzyme, YggS family [Bacteroidetes oral taxon
274 str. F0058]
gi|298276107|gb|EFI17658.1| pyridoxal phosphate enzyme, YggS family [Bacteroidetes oral taxon
274 str. F0058]
Length = 225
Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats.
Identities = 63/232 (27%), Positives = 101/232 (43%), Gaps = 24/232 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + V LV VSK + I A GQ F E+++QE
Sbjct: 2 IKENLNNIL----------GDLPEGVRLVCVSKFHPVEAICEAYEQGQRDFGESRVQELV 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L K D++ FIG LQ+NK+ IV +I++V + + + + R + +
Sbjct: 52 QKQPNLPK--DIRWHFIGPLQTNKIKYIVPFVHLIQSVENMRQMAEIQKCAARIERRVSI 109
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++++ E QK G ++ +F Q + + G+M I + K F
Sbjct: 110 LLEIHIAQEEQKHGFSQSELLEFFGEKTYLQYPNIKICGIMTIATLTDDQKQISEEFARA 169
Query: 178 SEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
I K +LS+GM+ D+ LAI G+T VRIGS IFG+R +
Sbjct: 170 KGIFESVKAIYPDSDFCQLSIGMSDDYRLAIEQGSTMVRIGSKIFGQRIYSS 221
>gi|222619875|gb|EEE56007.1| hypothetical protein OsJ_04770 [Oryza sativa Japonica Group]
Length = 244
Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats.
Identities = 77/230 (33%), Positives = 106/230 (46%), Gaps = 16/230 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +A + R ++V +VAV K +R G F EN +QE K
Sbjct: 14 LRAVLGRAAKAAERSGRAAEAVRVVAVGKTKPVSMVRELYDAGHRCFGENYVQEFVTKAP 73
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FLPV 122
L + D++ FIG LQSNKV + V ++E V K A+ L + R L V
Sbjct: 74 QLPE--DIRWHFIGHLQSNKVKSLLAAVPNLHMVEGVDNVKIANHLDRAVSSLGRDPLKV 131
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPH-FYLLS-- 178
+QVNT E KSGI P++ + + L GLM I + P F L
Sbjct: 132 LVQVNTSGEESKSGIDPSRCVELAKHVKLACPHLIFSGLMTIGMKDYSSTPENFKALVNC 191
Query: 179 --EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
E+ + + +LSMGM+ DFE AI G+TSVRIGS IFG R
Sbjct: 192 KLEVCKAIDMPAEQFELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYPN 241
>gi|218189740|gb|EEC72167.1| hypothetical protein OsI_05211 [Oryza sativa Indica Group]
Length = 244
Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats.
Identities = 77/230 (33%), Positives = 106/230 (46%), Gaps = 16/230 (6%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +A + R ++V +VAV K +R G F EN +QE K
Sbjct: 14 LRAVLGRAAKAAERSGRAAEAVRVVAVGKTKPVSMVRELYDAGHRCFGENYVQEFVTKAP 73
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FLPV 122
L + D++ FIG LQSNKV + V ++E V K A+ L + R L V
Sbjct: 74 QLPE--DIRWHFIGHLQSNKVKSLLAAVPNLHMVEGVDNVKIANHLDRAVSSLGRDPLKV 131
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPH-FYLLS-- 178
+QVNT E KSGI P++ + + L GLM I + P F L
Sbjct: 132 LVQVNTSGEESKSGIDPSRCVELAKHVKLACPHLIFSGLMTIGMKDYSSTPENFKALVNC 191
Query: 179 --EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
E+ + + +LSMGM+ DFE AI G+TSVRIGS IFG R
Sbjct: 192 KLEVCKAIDMPAEQFELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYPN 241
>gi|294495605|ref|YP_003542098.1| alanine racemase [Methanohalophilus mahii DSM 5219]
gi|292666604|gb|ADE36453.1| alanine racemase domain protein [Methanohalophilus mahii DSM 5219]
Length = 216
Score = 235 bits (600), Expect = 4e-60, Method: Composition-based stats.
Identities = 74/230 (32%), Positives = 114/230 (49%), Gaps = 24/230 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ ++I +LV V+K ++ ++I A+ G I EN++QE
Sbjct: 1 MPVDENIKRILEEI-----------GDKTLVCVTKTIEPERINEAIRAGATIIGENRVQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K K + IG LQ+NKV V FDVI++V K + + +
Sbjct: 50 YEDKSE---KILPCETHLIGHLQTNKVKRAVEYFDVIQSVDSLKVINNIDTRAGDIDKVQ 106
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM--GNPKPHFYLLS 178
V++QVN G E QK G ++ K+ + R + VEGLMCIPP + +P+F +
Sbjct: 107 RVFLQVNIGNEPQKHGFRLDRIKEVINEIRSLQNIRVEGLMCIPPFVPAEQTRPYFQKMK 166
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E K + +LSMGM+ D+ +AI GAT VR+GS IFGER
Sbjct: 167 ALFDEMKQENGGNIDIQELSMGMSNDYMVAIEEGATMVRVGSAIFGERKY 216
>gi|320539546|ref|ZP_08039213.1| pyridoxal phosphate enzyme [Serratia symbiotica str. Tucson]
gi|320030399|gb|EFW12411.1| pyridoxal phosphate enzyme [Serratia symbiotica str. Tucson]
Length = 207
Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats.
Identities = 69/206 (33%), Positives = 92/206 (44%), Gaps = 15/206 (7%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD---VQLRFIGSLQSN 85
+L+AVSK I A++ GQ F EN +QE K + ++ FIG LQSN
Sbjct: 2 TLLAVSKTKPVAVIAEAIAAGQRTFGENYVQEGVDKIQHFAALPEGTALEWHFIGPLQSN 61
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
K + F +TV R + A L+ + L V IQ+N E KSGI+ +
Sbjct: 62 KSRLVAEHFAWCQTVDRLRIAERLNNQRPATMAPLNVLIQINISDEQSKSGIVLDALPAL 121
Query: 146 VILCRQKYQLNVEGLMCIPPAM----------GNPKPHFYLLSEIARECKLTKLSMGMTR 195
L + GLM IP G F L + R ++ LSMGMT
Sbjct: 122 AEAIVALPNLMLRGLMAIPAPEVVYPRQLAVFGQMNDAFLALRQ--RYPQVDTLSMGMTD 179
Query: 196 DFELAIASGATSVRIGSGIFGERPCQ 221
D AIA+G+T VRIG+ IFG R
Sbjct: 180 DMAAAIAAGSTMVRIGTAIFGHRDYS 205
>gi|87125612|ref|ZP_01081457.1| hypothetical protein RS9917_02526 [Synechococcus sp. RS9917]
gi|86166912|gb|EAQ68174.1| hypothetical protein RS9917_02526 [Synechococcus sp. RS9917]
Length = 221
Score = 234 bits (599), Expect = 4e-60, Method: Composition-based stats.
Identities = 63/200 (31%), Positives = 102/200 (51%), Gaps = 3/200 (1%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
S L+AVSK + IR + GQV F E+++QEA +K L +Q FIG LQ+
Sbjct: 18 PPSARLLAVSKGHPAAAIRDLAALGQVAFGESRVQEALRKQEELADLTQLQWHFIGRLQA 77
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV +++ F I ++ +S ++ V +QV + +K G P + +
Sbjct: 78 NKVRQVLRAFGTIHSLDSLALCERVSRIAGEEGCQPRVMLQVKLRPDPKKGGWDPEELRQ 137
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECKLTKLSMGMTRDFELAI 201
++ ++ GLM I P P+ F ++A + L++ SMGM+ D+ A+
Sbjct: 138 VWPDLQRLPHCSIVGLMTIAPLGLAPEERLALFRDCRQLADDLGLSECSMGMSGDWAEAV 197
Query: 202 ASGATSVRIGSGIFGERPCQ 221
++GAT VR+GS +FGER Q
Sbjct: 198 SAGATWVRLGSALFGERSVQ 217
>gi|149923027|ref|ZP_01911445.1| hypothetical protein PPSIR1_13475 [Plesiocystis pacifica SIR-1]
gi|149816148|gb|EDM75658.1| hypothetical protein PPSIR1_13475 [Plesiocystis pacifica SIR-1]
Length = 245
Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats.
Identities = 73/242 (30%), Positives = 111/242 (45%), Gaps = 27/242 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKD------SVSLVAVSKMVDSKKIRVALSCGQVIFAE 55
+ +L + +++ + +A+R V L+ VSK K+ A + G F E
Sbjct: 5 DVPARLADIRARLDAA--VARRNPSIAADAPEVRLIGVSKRQPLAKLEAAHAAGLRDFGE 62
Query: 56 NKLQEAKKKWIPLRKEWD--VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
N QE + K D + +IG+LQSNK+ +V +I TV R + + +
Sbjct: 63 NYAQELRDKQRDWAPAGDDAPRWHYIGALQSNKLKYLVGKTTLIHTVDRPELLTAIDRRA 122
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE--GLMCIPPAM--GN 169
V I+V E QK+G+ P D + C + +V GLM IPPA +
Sbjct: 123 HAAGVVQDVLIEVAIAGEAQKAGVAPAALPDLLAACERAEHGSVRCLGLMIIPPAGTPED 182
Query: 170 PKPHFYLLSEIARECK-------------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ F L E+ + + L +LSMGM+ DFE+AIA GAT VR+G+ IFG
Sbjct: 183 TRCWFQALRELRDDLRGRFPGTGEAPRVLLRELSMGMSSDFEVAIAEGATLVRVGTAIFG 242
Query: 217 ER 218
R
Sbjct: 243 PR 244
>gi|256379757|ref|YP_003103417.1| alanine racemase domain protein [Actinosynnema mirum DSM 43827]
gi|255924060|gb|ACU39571.1| alanine racemase domain protein [Actinosynnema mirum DSM 43827]
Length = 231
Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats.
Identities = 65/221 (29%), Positives = 98/221 (44%), Gaps = 6/221 (2%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I + A R V+L+AV+K + +R+ G FAENK QEA+
Sbjct: 7 LRLNLAEVRARIAKACETADRDPAEVTLLAVTKTFPASDVRLLHGLGLRDFAENKDQEAR 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L D R +G LQ NK +++ D I++V + L K L V
Sbjct: 67 AKVAELGD-LDANWRMVGRLQRNKARSVLTWADRIDSVDSARLVDALVEAAAKNGVHLDV 125
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS---- 178
IQV+ + + G D + +L + G+M + P P F LL
Sbjct: 126 LIQVSIDGDAARGGCPVPDLPDLAARIGRSSELRLRGVMAVAPLGRYPGEAFALLKGAVT 185
Query: 179 EIAREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + T +S GM+ D E AIA G+T VR+G+ + G R
Sbjct: 186 RLRDDHPDATVISAGMSGDLEDAIAWGSTCVRVGTALLGSR 226
>gi|317056650|ref|YP_004105117.1| alanine racemase domain-containing protein [Ruminococcus albus 7]
gi|315448919|gb|ADU22483.1| alanine racemase domain protein [Ruminococcus albus 7]
Length = 244
Score = 234 bits (599), Expect = 5e-60, Method: Composition-based stats.
Identities = 68/227 (29%), Positives = 114/227 (50%), Gaps = 11/227 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + + +EN+ + D + ++AV+K V +KI A+ G + EN++QE
Sbjct: 18 AVLDNYKRICYNVENAKAKYRSNDDKIDIMAVTKTVAPEKINFAIDQGITLLGENRVQEF 77
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K K V IG LQ+NKV I++ +I++V K A ++ +K R +
Sbjct: 78 LSKKDSYNKSAQV--HMIGRLQTNKVKYIINEVSMIQSVDSLKLAKEINRLAVKNDRIMD 135
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V +++N G E+ KSG+ + + + Q + ++GLM IPP +G + F + I
Sbjct: 136 VLLEINIGDEVSKSGVAADGLDELIYETAQLSNVRIKGLMAIPP-VGCGEDMFERMHSIF 194
Query: 182 RECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
K + LSMGM+ D+ELAI G+ VRIG+ +FG R
Sbjct: 195 LRVKENAVPNVSMEILSMGMSGDYELAIKHGSNLVRIGTALFGARNY 241
>gi|74318436|ref|YP_316176.1| hypothetical protein Tbd_2418 [Thiobacillus denitrificans ATCC
25259]
gi|74057931|gb|AAZ98371.1| Protein of unknown function UPF0001 [Thiobacillus denitrificans
ATCC 25259]
Length = 246
Score = 234 bits (599), Expect = 6e-60, Method: Composition-based stats.
Identities = 71/204 (34%), Positives = 94/204 (46%), Gaps = 8/204 (3%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
SV L+AVSK + +R GQ F EN LQEA K L + FIG +Q
Sbjct: 42 DPASVELLAVSKAFGAAAVRALAGAGQRAFGENYLQEALVKQAALAD-LALDWHFIGPIQ 100
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
SNK I F + +V R K A LS + L V I+VN E K G P+
Sbjct: 101 SNKTRPIAENFGWVHSVDRLKIAQRLSAQRPLGLPPLNVCIEVNVSGEASKGGASPDALP 160
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIARECK----LTKLSMGMTRD 196
+ V + L + G+M IP + + F L E+ + L +SMGM+ D
Sbjct: 161 ELVEAVARLPGLRLRGMMTIPAPTHDFDAQRAAFRRLRELFDGLRERHALDTMSMGMSAD 220
Query: 197 FELAIASGATSVRIGSGIFGERPC 220
E AI GAT VR+G+ +FGER
Sbjct: 221 LEAAILEGATIVRVGTALFGERKY 244
>gi|296112563|ref|YP_003626501.1| putative alanine racemase [Moraxella catarrhalis RH4]
gi|295920257|gb|ADG60608.1| putative alanine racemase [Moraxella catarrhalis RH4]
gi|326561327|gb|EGE11685.1| putative alanine racemase [Moraxella catarrhalis 7169]
gi|326567615|gb|EGE17728.1| putative alanine racemase [Moraxella catarrhalis 12P80B1]
gi|326569725|gb|EGE19775.1| putative alanine racemase [Moraxella catarrhalis BC8]
gi|326573019|gb|EGE22995.1| putative alanine racemase [Moraxella catarrhalis CO72]
Length = 236
Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 102/228 (44%), Gaps = 16/228 (7%)
Query: 3 LGNKLQVFKQKIENSAILA------KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
L ++ KQ + + A RP L+AVSK I+ GQ F EN
Sbjct: 12 LLTNYRLIKQALNTANDQAVQMNPTHRPA---KLIAVSKTKPVAMIQTLFHQGQQDFGEN 68
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
LQEA K L + + +IGS+Q NK +I FD + T+ RE A L+ +
Sbjct: 69 YLQEALGKISQLSQLP-IIWHYIGSIQRNKTRDIAKHFDWVHTLEREIIAQRLNEQRA-G 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP-----AMGNPK 171
+ L V IQ+N E KSG P + + LN+ G+M IP A K
Sbjct: 127 MQPLNVLIQINIDDESSKSGCKPTELPTLIEQIINYKNLNLRGVMVIPSQQTVDAFARTK 186
Query: 172 PHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F ++ +SMGM+ D A+A G+T VR+G+ IFGER
Sbjct: 187 VLFDAMARRFDLPNWDTISMGMSGDMTQAVAHGSTMVRVGTAIFGERD 234
>gi|116075031|ref|ZP_01472291.1| hypothetical protein RS9916_25764 [Synechococcus sp. RS9916]
gi|116067228|gb|EAU72982.1| hypothetical protein RS9916_25764 [Synechococcus sp. RS9916]
Length = 224
Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats.
Identities = 62/198 (31%), Positives = 91/198 (45%), Gaps = 3/198 (1%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ V L+AVSK + +R GQV F E+++Q+A K L ++ FIG LQ+
Sbjct: 20 PEGVRLLAVSKGHPAAPVRELAELGQVDFGESRVQDALPKQEQLADLVQIRWHFIGRLQA 79
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV +V F VI +V A + ++ ++QV + K G P D
Sbjct: 80 NKVRPVVRAFAVIHSVDSLALAQRMDRIAAEEGVIPEAFLQVKMRPDPAKGGWDPQALTD 139
Query: 145 FVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI 201
+ + GLM + P F +A L + SMGM+ D+ A
Sbjct: 140 AWPQLQALPHVRFTGLMTMAPLGCSQEQRSALFADCRTLADRLGLRECSMGMSGDWPEAA 199
Query: 202 ASGATSVRIGSGIFGERP 219
A+GAT VR+GSG+FG RP
Sbjct: 200 AAGATWVRVGSGLFGARP 217
>gi|312867083|ref|ZP_07727293.1| pyridoxal phosphate enzyme, YggS family [Streptococcus
parasanguinis F0405]
gi|311097212|gb|EFQ55446.1| pyridoxal phosphate enzyme, YggS family [Streptococcus
parasanguinis F0405]
Length = 222
Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats.
Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 16/226 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + +Q++E + A R +D V+++AV+K VD + G EN++ +
Sbjct: 1 MNLVENADLVRQQVETARNKANR-QDQVNVIAVTKYVDVTTTEALVKTGIQHIGENRVDK 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L KE+D+ IGSLQ KV ++++L D + K A + +
Sbjct: 60 FLEKYQAL-KEYDLTWHLIGSLQRRKVKDVINLVDYFHALDSVKLAQEIQKRAE---HPI 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G P++ D + Q ++ + GLM + P + + F
Sbjct: 116 KCFLQVNISGEESKHGFAPDELDDVLAEIAQLDKIEIVGLMTMAPFEASQEELQDIFSKT 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ ++ + ++LSMGM+RDFE+AIA+GAT VRIG+ F
Sbjct: 176 HQLQKQLEKKQLKNMPFSELSMGMSRDFEVAIANGATYVRIGTSFF 221
>gi|330469286|ref|YP_004407029.1| alanine racemase domain-containing protein [Verrucosispora maris
AB-18-032]
gi|328812257|gb|AEB46429.1| alanine racemase domain-containing protein [Verrucosispora maris
AB-18-032]
Length = 248
Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats.
Identities = 65/231 (28%), Positives = 103/231 (44%), Gaps = 13/231 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I ++ + R + V+++AV+K + + G EN+ QEA
Sbjct: 16 LAAGLARVRTRIADACVAVGRDRTEVTMIAVTKTYPAADVIALAGLGVTDVGENRDQEAA 75
Query: 63 KKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE-MIKQSRFL 120
K + + FIG LQ NKV +V DV+++V + AS L ++ R L
Sbjct: 76 PKAEQVALAGVAPRWHFIGRLQRNKVKSVVRYADVVQSVDSVRLASALDAATTGRRDRPL 135
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFV------ILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
V++QV+ + + G +P+ + L + GLM + P P+ F
Sbjct: 136 EVFVQVSIDGDPSRGGSVPDSADPDIGLGPVTAAVAASAGLRLAGLMAVAPLGWEPERAF 195
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ IA + LS GM+ D E AI GAT VR+GS + G RP
Sbjct: 196 ARLATIAETVRAEHPQAVALSAGMSGDLEAAIGHGATHVRVGSALLGMRPT 246
>gi|254167572|ref|ZP_04874423.1| conserved hypothetical protein TIGR00044 [Aciduliprofundum boonei
T469]
gi|289596946|ref|YP_003483642.1| alanine racemase domain protein [Aciduliprofundum boonei T469]
gi|197623381|gb|EDY35945.1| conserved hypothetical protein TIGR00044 [Aciduliprofundum boonei
T469]
gi|289534733|gb|ADD09080.1| alanine racemase domain protein [Aciduliprofundum boonei T469]
Length = 218
Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats.
Identities = 69/230 (30%), Positives = 110/230 (47%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + Q++ V L+A +K ++I A++ G + EN +QE
Sbjct: 1 MNISENVIKIIQEL----------PPGVRLLAATKSRTVEEILEAINAGVDLIGENYVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K+ + + V+ FIG LQ NKV + + +FDVIETV + A + +
Sbjct: 51 ALQKYEKIGNK--VEWHFIGHLQKNKVKKALQIFDVIETVDNVELAKEIDKRAKNMEKIA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
V I++N+ E QK+G+MP D L + G+M + P + P +P+F
Sbjct: 109 FVMIEINSAREPQKAGVMPEYALDLADEIYSLEHLRLMGVMTMGPVVDEPEEIRPYFRNT 168
Query: 178 SEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
EI E ++ LSMGMT + +A+ G VRIG+GIFG R
Sbjct: 169 KEIFDELRYIYGDEQIKYLSMGMTNTWRVAVEEGTNIVRIGTGIFGPRKY 218
>gi|78213542|ref|YP_382321.1| hypothetical protein Syncc9605_2025 [Synechococcus sp. CC9605]
gi|78198001|gb|ABB35766.1| Protein of unknown function UPF0001 [Synechococcus sp. CC9605]
Length = 220
Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats.
Identities = 68/208 (32%), Positives = 102/208 (49%), Gaps = 5/208 (2%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
A+ A RP S L+AVSK + +R GQ F E+++QEA K L + +++
Sbjct: 11 ALQAVRPSSS-RLLAVSKGHPAASVRCVAELGQCDFGESRVQEALPKQEAL-IDLNLRWH 68
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
FIG LQSNKV +V FDVI +V A +S +++ R V +QV + K G+
Sbjct: 69 FIGRLQSNKVRPVVKAFDVIHSVDSLSLAERVSRIALEEDRRPEVLLQVKFRPDPSKGGL 128
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLSEIARECKLTKLSMGMT 194
+ + L + GLM + P K F +A + L + SMGM+
Sbjct: 129 SAEELGAIWSDLQALPGLRISGLMTMAPLDMAAEQRKALFSDCRALADQLALAECSMGMS 188
Query: 195 RDFELAIASGATSVRIGSGIFGERPCQT 222
D++ A +G+T +RIGS +FG R T
Sbjct: 189 TDWKEAAEAGSTWLRIGSALFGPRLVST 216
>gi|253682617|ref|ZP_04863414.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum D
str. 1873]
gi|253562329|gb|EES91781.1| pyridoxal phosphate enzyme, YggS family [Clostridium botulinum D
str. 1873]
Length = 220
Score = 234 bits (598), Expect = 6e-60, Method: Composition-based stats.
Identities = 61/228 (26%), Positives = 105/228 (46%), Gaps = 22/228 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + K+ I + +L+AVSK K+++ A C F ENK+QE
Sbjct: 1 MAIKENVYKIKKSI----------PEGTTLIAVSKTRSLKELQEAYECNIRDFGENKVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K DV+ IG LQ+NKV IV +I ++ + + +
Sbjct: 51 LIEKIDNFHN--DVRWHLIGHLQTNKVKYIVGKVHLIHSLDNIRLLKEIEKRYSMCHKVA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP--AMGNPKPHFYLLS 178
IQ+N G + KSG++ ++ + C + + ++G+M + P + +F +
Sbjct: 109 NALIQINIGRDPNKSGVLKEDLQNLINECEKCKYVKIKGIMTVIPKGNQDANREYFKEMK 168
Query: 179 EIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I K+ +SMGMT D+++A+ G+ VRIG GIFG+R
Sbjct: 169 NIYDFLSKNNYNNIKMEFISMGMTGDYKIALEEGSNMVRIGEGIFGKR 216
>gi|332361767|gb|EGJ39571.1| cell division protein YlmE [Streptococcus sanguinis SK1056]
Length = 223
Score = 234 bits (598), Expect = 7e-60, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ E ++ IGSLQ KV ++++ D + K A + +
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDKRAQ---HVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G + + + + + + + GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFLIEELEVVLPELEKLENVQIVGLMTMAPFEASHEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAYGSTYVRIGTAFF 222
>gi|225703686|gb|ACO07689.1| Proline synthetase co-transcribed bacterial homolog protein
[Oncorhynchus mykiss]
Length = 282
Score = 234 bits (598), Expect = 7e-60, Method: Composition-based stats.
Identities = 77/250 (30%), Positives = 111/250 (44%), Gaps = 30/250 (12%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFA 54
MS +G L ++ +A A+RPK LVAVSK + A G F
Sbjct: 6 MSEEVGKALHAVVDRVNQAA--ARRPKTLPAVPPRLVAVSKTKPPDMVIEAYRKGHRNFG 63
Query: 55 ENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLL 109
EN + E K L +++ FIG LQ N V+++ V ++ETV K A +
Sbjct: 64 ENYVNELVDKASNPQILESCPEIEWHFIGHLQKNNVNKLLGVPNLFMVETVDSAKLADKV 123
Query: 110 S----LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIP 164
+ ++ L + +Q+NT E K G+ P +T + V + L+ GLM I
Sbjct: 124 NSSWQRLRAASTQKLKIMVQINTSGEESKHGLPPGETVNTVKHILSKCSALHFSGLMTIG 183
Query: 165 ----PAMGNPKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGS 212
P P F L E+ +L +LSMGM+ DFE AI G+T+VR+GS
Sbjct: 184 RYGYDLADGPNPDFQALLSRRQEVCASLQLPLEDVELSMGMSTDFEHAIEVGSTNVRVGS 243
Query: 213 GIFGERPCQT 222
IFG R
Sbjct: 244 TIFGNRDYPN 253
>gi|332362880|gb|EGJ40673.1| cell division protein YlmE [Streptococcus sanguinis SK49]
Length = 223
Score = 234 bits (598), Expect = 7e-60, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ E ++ IGSLQ KV ++++ D + K A + +
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDKRAE---HVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G + + + + + + GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFLVEDLEVVLPELEKLENVQIVGLMTMAPFEASHEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|224369408|ref|YP_002603572.1| hypothetical protein HRM2_23130 [Desulfobacterium autotrophicum
HRM2]
gi|223692125|gb|ACN15408.1| conserved hypothetical protein [Desulfobacterium autotrophicum
HRM2]
Length = 230
Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats.
Identities = 77/227 (33%), Positives = 113/227 (49%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ N+L+ + I+++A A R D + LV VSK + K A+ G I EN +QEA
Sbjct: 4 ITNRLKAIRNAIKDAAQSAGRNPDEILLVGVSKRQSAAKAMAAVHAGVTILGENYIQEAV 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L K+ + FIG LQ+NK V FD+I TV K A + + K + +
Sbjct: 64 EKIETL-KDLEASWHFIGHLQTNKARFAVQHFDLIHTVDSIKLAREIDKQAQKIKKIQKI 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQ+N E KSG + V + + GLM +PP +P +P F L++
Sbjct: 123 LIQINISQESSKSGARADDALALVRGVSLLKNVAITGLMGMPPFFDDPEQARPFFRELAQ 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I + + + LSMGM+ DF+ AI G+T VRIG+ IFG R
Sbjct: 183 IRSKIEDAKIPNVLMDHLSMGMSGDFKAAIEEGSTMVRIGTAIFGAR 229
>gi|302518523|ref|ZP_07270865.1| alanine racemase domain-containing protein [Streptomyces sp. SPB78]
gi|318057558|ref|ZP_07976281.1| hypothetical protein SSA3_06454 [Streptomyces sp. SA3_actG]
gi|318078778|ref|ZP_07986110.1| hypothetical protein SSA3_19183 [Streptomyces sp. SA3_actF]
gi|302427418|gb|EFK99233.1| alanine racemase domain-containing protein [Streptomyces sp. SPB78]
Length = 244
Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats.
Identities = 67/231 (29%), Positives = 104/231 (45%), Gaps = 16/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R + V+L+AV+K + +R+ S G EN+ QEA
Sbjct: 11 LAANLAKVEERIAKACAAAGRSRGDVTLIAVTKTYPASDVRLLSSLGVGQVGENRDQEAG 70
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + FIG LQ+NK + + +V R + A+ L +++ R +
Sbjct: 71 PKAAE-CADLPLTWHFIGQLQTNKAKSVARYASYVHSVDRARLAAPLGAAAVREGREIGA 129
Query: 123 YIQVNTGYE------IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AMGNPKP 172
+QV E + G P++ + V L GLM + P G+ +
Sbjct: 130 LVQVALDAEGDPAAHAGRGGAHPDEVPELVDRIAATEGLRPAGLMTVAPLAGRYAGDARA 189
Query: 173 HFYLLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L+E+ A T +S GM+ D E AIA+GAT VRIGS I G R
Sbjct: 190 AFARLAELASLVRAAHPAATMVSAGMSGDLEEAIAAGATHVRIGSAILGTR 240
>gi|56752042|ref|YP_172743.1| hypothetical protein syc2033_d [Synechococcus elongatus PCC 6301]
gi|81300869|ref|YP_401077.1| hypothetical protein Synpcc7942_2060 [Synechococcus elongatus PCC
7942]
gi|56687001|dbj|BAD80223.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81169750|gb|ABB58090.1| Protein of unknown function UPF0001 [Synechococcus elongatus PCC
7942]
Length = 221
Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats.
Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 20/226 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L + ++ SV L+AVSK + IR A + GQ F EN++QEA
Sbjct: 4 IAERLASLRSQL----------PPSVQLIAVSKNHPAAAIREAYAAGQRHFGENRVQEAI 53
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L D+ +G LQSNK + V FD I +V A L + R +
Sbjct: 54 AKQAELTDLPDLTWHLLGKLQSNKARKAVEHFDWIHSVDSWALAERLDRIAGELGRSPKL 113
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYL--- 176
+QV + K+G P + + Q Q+ + GLM I P + F
Sbjct: 114 CLQVKLLPDPNKAGWDPADLRAELPQLSQLQQVQIRGLMVIAPLGLTAAETQALFAQART 173
Query: 177 ----LSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L + A + +LT+LSMGM+ D+ LA+A GAT +R+G+ +FG R
Sbjct: 174 FAAELQQQAPQLRLTELSMGMSSDWPLAVAEGATWIRVGTQLFGPR 219
>gi|312378867|gb|EFR25319.1| hypothetical protein AND_09463 [Anopheles darlingi]
Length = 255
Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats.
Identities = 77/242 (31%), Positives = 113/242 (46%), Gaps = 27/242 (11%)
Query: 7 LQVFKQKIEN--SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++ QKI+ +A LVAVSK + I A S GQ F EN +QE +K
Sbjct: 10 IRETLQKIDQVYAAKSPTSNAPKPLLVAVSKTKPIELILDAYSVGQRHFGENYVQELVEK 69
Query: 65 WIP---LRKEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIKQS-- 117
L + D++ FIG LQSNK+++I++L +I+TV K A L+ K
Sbjct: 70 ANDERILEQCKDIRWHFIGHLQSNKINKILNLPNLHMIQTVHSTKLAEGLNKAWEKLKTE 129
Query: 118 -----RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN-- 169
L V +Q+NT E +K+G+ P + Q L+ +G+M I +
Sbjct: 130 HPETQAKLNVLVQINTSGEDEKNGVQPGDAVELYRYVLEQCPNLSCDGVMTIGRFGHDYS 189
Query: 170 --PKPHFYLLSEIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P P F L + + T ++SMGM+ DF AI G+T VR+GS IFG R
Sbjct: 190 TGPNPDFGTLMKCHEQICCTFERDPAEVQVSMGMSDDFVQAIEEGSTIVRVGSSIFGARA 249
Query: 220 CQ 221
+
Sbjct: 250 KK 251
>gi|261415781|ref|YP_003249464.1| alanine racemase domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261372237|gb|ACX74982.1| alanine racemase domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 257
Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats.
Identities = 69/249 (27%), Positives = 113/249 (45%), Gaps = 30/249 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + +I+ + +A R ++SV LV VSK ++ + A++ G F EN++QEA+
Sbjct: 8 MREHLAALEARIDEACKIAGRSRESVKLVWVSKFHPAEAVENAIALGATDFGENRVQEAE 67
Query: 63 KKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL----EMIK 115
K+ R D V+ IG +QSNK+ + + D I +++ + L
Sbjct: 68 LKFSEPRTAKDGSRVRCHVIGPVQSNKLKKAALVADCIHSIASIEAVEKLEKVCAAAANG 127
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC------------RQKYQLNVEGLMCI 163
Q + L + QVN G E KSG+ ++ + F+ L GLM I
Sbjct: 128 QGKVLDILFQVNAGEEETKSGLDVHEAEAFLEDLEKRAGAAADGKSENFPHLRFRGLMTI 187
Query: 164 PPAMG---NPKPHFYLLSEIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGS 212
G + + F L + + +LSMGMT D E+AI G+T +R+G+
Sbjct: 188 GKNTGVAEDSRECFAFLRGLRDKFLAKGGAFAAFDQLSMGMTGDLEVAIEEGSTMIRVGT 247
Query: 213 GIFGERPCQ 221
+FGER
Sbjct: 248 ALFGERDYS 256
>gi|326564235|gb|EGE14469.1| putative alanine racemase [Moraxella catarrhalis 46P47B1]
gi|326571669|gb|EGE21684.1| putative alanine racemase [Moraxella catarrhalis BC7]
Length = 236
Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats.
Identities = 73/228 (32%), Positives = 102/228 (44%), Gaps = 16/228 (7%)
Query: 3 LGNKLQVFKQKIENSAILA------KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
L ++ KQ + + A RP L+AVSK I+ GQ F EN
Sbjct: 12 LLTNYRLIKQALNTANDQAVQMNPTHRPA---KLIAVSKTKPVAMIQTLFHQGQQDFGEN 68
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
LQEA K L + + +IGS+Q NK +I FD + T+ RE A L+ +
Sbjct: 69 YLQEALGKISQLSQLP-IIWHYIGSIQRNKTRDIAKHFDWVHTLEREIIAQRLNEQRA-G 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP-----AMGNPK 171
+ L V IQ+N E KSG P + + LN+ G+M IP A K
Sbjct: 127 MQPLNVLIQINIDDESSKSGCKPTELPTLIEQIINYKNLNLRGVMVIPSQQTVDAFARTK 186
Query: 172 PHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F ++ +SMGM+ D A+A G+T VR+G+ IFGER
Sbjct: 187 VLFDAMARRFDLPNWDTISMGMSGDMAQAVAHGSTMVRVGTAIFGERD 234
>gi|114329007|ref|YP_746164.1| hypothetical protein GbCGDNIH1_2343 [Granulibacter bethesdensis
CGDNIH1]
gi|114317181|gb|ABI63241.1| hypothetical exported protein [Granulibacter bethesdensis CGDNIH1]
Length = 236
Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats.
Identities = 89/196 (45%), Positives = 119/196 (60%), Gaps = 1/196 (0%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV-QLRFIGSLQ 83
+V+LVAVSK + A GQ +F ENK+QEA K++PLR E D L IG LQ
Sbjct: 23 PQTVTLVAVSKTHGPDAVAAARRAGQSVFGENKVQEALTKFLPLRDEADPPTLHLIGGLQ 82
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
+NK E V + DVIE++ R + A L+L K+ R + +QVN G E QKSGI +
Sbjct: 83 TNKAREAVRVADVIESLDRPRLADALALAAEKEKRLPRLLVQVNVGDEPQKSGIPTREAD 142
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIAS 203
F+ +CR ++ + G+M IPPA +P P+F L+ A L +SMGM+ DFE AIA+
Sbjct: 143 SFIEMCRHRFGDALCGVMGIPPADVDPDPYFLWLAAAAARHGLPVISMGMSGDFEQAIAN 202
Query: 204 GATSVRIGSGIFGERP 219
GAT VRIG+ IFG RP
Sbjct: 203 GATHVRIGTAIFGARP 218
>gi|325524417|gb|EGD02494.1| hypothetical protein B1M_21228 [Burkholderia sp. TJI49]
Length = 198
Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats.
Identities = 64/197 (32%), Positives = 88/197 (44%), Gaps = 9/197 (4%)
Query: 34 SKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVS 92
SK + +R A + GQ F EN +QE+ K L ++ FIG LQSNK +
Sbjct: 1 SKPFPADDVRAAHAAGQRAFGENYVQESVDKIESLADLRASLEWHFIGPLQSNKTRAVAE 60
Query: 93 LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK 152
FD + +V R K A L+ + L V +QVN E KSG+ P D
Sbjct: 61 RFDWVHSVDRLKIAQRLAEQRPAHLPPLNVCVQVNISGEASKSGVAPADVADVARAVAAL 120
Query: 153 YQLNVEGLMCIPPAMGNPKPHF---YLLSEIARECK-----LTKLSMGMTRDFELAIASG 204
L + GLM IP + + L + + L LSMGM+ D + A+ G
Sbjct: 121 PSLRLRGLMAIPEPAADIEAQRAPHRALRALFDALRADGLPLDTLSMGMSADLDAAVLEG 180
Query: 205 ATSVRIGSGIFGERPCQ 221
AT VR+G+ IFG R
Sbjct: 181 ATIVRVGTAIFGARDYS 197
>gi|312066549|ref|XP_003136323.1| hypothetical protein LOAG_00735 [Loa loa]
gi|307768518|gb|EFO27752.1| hypothetical protein LOAG_00735 [Loa loa]
Length = 265
Score = 234 bits (597), Expect = 8e-60, Method: Composition-based stats.
Identities = 85/237 (35%), Positives = 124/237 (52%), Gaps = 20/237 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPK----DSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
+L + LQ+ ++IEN++ A++ SL+AVSK S I+ GQ+ F EN
Sbjct: 24 ALVDNLQLVLRRIENASKKAEQSPYWRGQKPSLIAVSKTKSSSLIQCCYDAGQMKFGENY 83
Query: 58 LQEAKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVS--LFDVIETVSREKTASLLSLEMI 114
+QE K L+ K ++Q FIG++QSNK++++ +ET+ +K +S+L E+
Sbjct: 84 IQELADKAKTLKSKCPNIQWHFIGTIQSNKIAKLAEINNLSCVETICNKKHSSILEKEIA 143
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN---- 169
K +R L V +QVNT E QK G P + R L G M I N
Sbjct: 144 KHNRTLKVLVQVNTSKEKQKGGTTPEMAVELAEFIRVHCPSLKFSGFMTIGSFARNMSET 203
Query: 170 PKPHFYLLSEIARE-CKLT-------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P F L ++ + C+LT +LSMGM+ DFE AI G+TSVRIG+ IFG R
Sbjct: 204 PNRDFIELFKVRKTFCELTEENEENFELSMGMSNDFEAAIMLGSTSVRIGNAIFGHR 260
>gi|295398670|ref|ZP_06808694.1| YggS family pyridoxal phosphate enzyme [Aerococcus viridans ATCC
11563]
gi|294973105|gb|EFG48908.1| YggS family pyridoxal phosphate enzyme [Aerococcus viridans ATCC
11563]
Length = 226
Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 16/226 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ N +Q + I N+ + V+L+ VSK + G FAEN+ +
Sbjct: 1 MTIRNNVQSIEGIIANAQQSSALSSSDVTLICVSKYHSIDEANTVYDAGVRHFAENRPEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K + D+ IG+LQ+ KV ++++ D + R K A ++ K +
Sbjct: 61 FQEKSAAMAD--DIVWHLIGTLQTRKVKDVINEIDYFHALDRIKLAKEINKRADK---VI 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
++QVN E K GI P + F+ + ++ + GLM + P + + +F L
Sbjct: 116 KCFLQVNVSGEESKHGIAPTEIAAFIEAVAEFPKVKIVGLMTMAPIDASEEEIHGYFANL 175
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + + LSMGM+ D+ +A+A GA VR+GS IF
Sbjct: 176 RQLRDQVQAMGKAYAPCQHLSMGMSGDYPIAVAEGADFVRVGSAIF 221
>gi|307565803|ref|ZP_07628265.1| pyridoxal phosphate enzyme, YggS family [Prevotella amnii CRIS
21A-A]
gi|307345488|gb|EFN90863.1| pyridoxal phosphate enzyme, YggS family [Prevotella amnii CRIS
21A-A]
Length = 223
Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats.
Identities = 62/231 (26%), Positives = 104/231 (45%), Gaps = 26/231 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L +++ + V L+AVSK + I A + GQ F E+ +QE
Sbjct: 3 DVVDNLHSVLREL----------PNGVKLIAVSKYHPIEYIEAAYAEGQRAFGESLVQEL 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KK L K D++ FIG LQ+NKV IV +IE V K + + K +R +
Sbjct: 53 SKKVTSLPK--DIEWHFIGHLQTNKVKYIVPYISMIEAVDSVKLLREIEKQASKYNRVIK 110
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
V ++++ E K G + F+ R + + GLM + + + + +
Sbjct: 111 VLLELHIAKEESKYGFSFEDCRAFIDSGEWRNMSHVCISGLMMMASNVSDKEQVRKEMLS 170
Query: 178 -SEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
S E K + S GM++D+++A++ +T VRIG+ IFG R
Sbjct: 171 ASIFFDEIKKKYFSDKASFKERSWGMSQDYDVAVSCNSTMVRIGTKIFGPR 221
>gi|324990667|gb|EGC22603.1| cell division protein YlmE [Streptococcus sanguinis SK353]
Length = 223
Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats.
Identities = 61/226 (26%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQDNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ E ++ IGSLQ KV ++++ D + K A + +
Sbjct: 61 FLDKYHALKDE-NLIWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDKRAE---HVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G + + + + + + + GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFLIEELEVVLPELEKLENVQIVGLMTMAPFEASHEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|322389015|ref|ZP_08062585.1| cell division protein YlmE [Streptococcus parasanguinis ATCC 903]
gi|321144320|gb|EFX39728.1| cell division protein YlmE [Streptococcus parasanguinis ATCC 903]
Length = 222
Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 16/226 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + +Q++E + A R +D V+++AV+K VD + G EN++ +
Sbjct: 1 MNLVENADLVRQQVETARNKANR-QDQVNVIAVTKYVDVATTEALVKTGIQHIGENRVDK 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L +D+ IGSLQ KV ++++L D + K A + +
Sbjct: 60 FLEKYQAL-NGYDLTWHLIGSLQRRKVKDVINLVDYFHALDSVKLAQEIQKRAE---HPI 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G P++ D + Q ++ + GLM + P + + F
Sbjct: 116 KCFLQVNISGEESKHGFAPDELDDVLAEIAQLDKIEIVGLMTMAPFEASQEELQDIFSKT 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ ++ + ++LSMGM+RDFE+AIA+GAT VRIG+ F
Sbjct: 176 HQLQKQLEKKQLKNMPFSELSMGMSRDFEVAIANGATYVRIGTSFF 221
>gi|254167228|ref|ZP_04874081.1| conserved hypothetical protein TIGR00044 [Aciduliprofundum boonei
T469]
gi|197624084|gb|EDY36646.1| conserved hypothetical protein TIGR00044 [Aciduliprofundum boonei
T469]
Length = 218
Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats.
Identities = 70/230 (30%), Positives = 110/230 (47%), Gaps = 22/230 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + Q++ V L+A +K ++I A++ G + EN +QE
Sbjct: 1 MNISENVIKIIQEL----------PPGVRLLAATKSRTVEEILEAINAGVDLIGENYVQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K+ + + V+ FIG LQ NKV + + +FDVIETV + A + +
Sbjct: 51 ALQKYEKIGNK--VEWHFIGHLQKNKVKKALQIFDVIETVDNVELAKEIDKRAKNMEKIA 108
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
V I++N+ E QK+G+MP D L + G+M + P + P+ +F
Sbjct: 109 FVMIEINSAREPQKAGVMPEYALDLADEIYSLEHLQLIGVMTMGPVVDEPEEIRSYFRKT 168
Query: 178 SEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
EI E ++ LSMGMT + +AI GA VRIG+GIFG R
Sbjct: 169 KEIFDELRYIYGDKQIKYLSMGMTNTWRVAIEEGANIVRIGTGIFGPRKY 218
>gi|294782618|ref|ZP_06747944.1| pyridoxal phosphate enzyme, YggS family [Fusobacterium sp.
1_1_41FAA]
gi|294481259|gb|EFG29034.1| pyridoxal phosphate enzyme, YggS family [Fusobacterium sp.
1_1_41FAA]
Length = 223
Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + I + V L+AV+K + I L GQ I ENK+Q
Sbjct: 1 MSIQASVEEILEDI----KKYSPYPEKVKLIAVTKYSSVEDIEEFLKTGQNICGENKVQV 56
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K + K D++ FIG+LQ NKV I+ I +V++ A ++ + + +
Sbjct: 57 VKDKIEYFKNKNTDIKWHFIGNLQKNKVKYIIDDVVAIHSVNKLSLAQEINKKAEQSGKT 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ V +++N E K G ++ K +I + LN+ G+M + P + + F
Sbjct: 117 MDVLLEINVYGEESKQGYSLDELKCDIIELKNLKNLNIIGVMTMAPFTDDEKILRMVFSE 176
Query: 177 LSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L +I E LT+LSMGM+ D+++A+ G+T +R+G+ IF
Sbjct: 177 LRKIKDELNKEYFDNNLTELSMGMSNDYKIALQEGSTYIRVGTKIF 222
>gi|209736652|gb|ACI69195.1| Proline synthetase co-transcribed bacterial homolog protein [Salmo
salar]
Length = 282
Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats.
Identities = 78/250 (31%), Positives = 112/250 (44%), Gaps = 30/250 (12%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFA 54
MS +G L K+ +A A+RPK LVAVSK + A G F
Sbjct: 6 MSEEVGKALHAVVDKVNQAA--ARRPKTLPAVPPRLVAVSKTKPPDMVIEAYRKGHRNFG 63
Query: 55 ENKLQEAKKKWIPLR---KEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLL 109
EN + E K L+ +++ FIG LQ N V+++ V ++ETV K A +
Sbjct: 64 ENYVNELVDKASNLQILESCPEIEWHFIGHLQKNNVNKLLGVPNLFMVETVDSAKLADKV 123
Query: 110 S----LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIP 164
+ ++ L + +Q+NT E K G+ P +T + V + L+ GLM I
Sbjct: 124 NSSWQRLRAASTQTLKIMVQINTSGEESKHGLPPGETVNTVKHILSKCSALHFSGLMTIG 183
Query: 165 ----PAMGNPKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGS 212
P P F L E+ +L +LSMGM+ DFE AI G+T+VR+GS
Sbjct: 184 RYGYDLADGPNPDFQALLSRRQEVCASLQLPLEDVELSMGMSTDFEHAIEVGSTNVRVGS 243
Query: 213 GIFGERPCQT 222
IFG R
Sbjct: 244 TIFGNRDYPN 253
>gi|55980532|ref|YP_143829.1| hypothetical protein TTHA0563 [Thermus thermophilus HB8]
gi|55771945|dbj|BAD70386.1| conserved hypothetical protein (TIM-barrel fold) [Thermus
thermophilus HB8]
Length = 211
Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats.
Identities = 69/212 (32%), Positives = 104/212 (49%), Gaps = 8/212 (3%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKW 65
L ++I + A R + V LVAV+K ++IR L+ G E+++QEA KK
Sbjct: 3 LPQVLERIARACRCAGRRPEEVRLVAVTKGRSVEEIREKVLAYGTFPLGESRVQEALKKM 62
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L+ E +G LQ NK F ++ ++ + A L K L V ++
Sbjct: 63 DLLQAE----WHLVGHLQRNKAK-FAPRFALVHSLDSLRLAEALEKVGEKAGVRLKVLVE 117
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLSEIARE 183
VN G E QK G++ + + + R+ L V GLM +PP +P F LSE+A
Sbjct: 118 VNLGREPQKHGVLEEELPELLHRLREMPHLEVLGLMTVPPIGPEAVVRPIFRRLSELADR 177
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L + SMGM+ D+E A+ GAT VR+G +F
Sbjct: 178 YGLPERSMGMSDDYEWAVEEGATLVRVGRALF 209
>gi|315657455|ref|ZP_07910337.1| cell division protein YlmE [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|315491927|gb|EFU81536.1| cell division protein YlmE [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 248
Score = 234 bits (597), Expect = 9e-60, Method: Composition-based stats.
Identities = 79/242 (32%), Positives = 119/242 (49%), Gaps = 22/242 (9%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS +LQ Q++ +A A R +S+ ++ VSK +R AL+ G F ENK Q
Sbjct: 1 MSGFSQRLQDLSQRVAAAAATAGRDSESIRILPVSKTHPVADLREALAAGVSEFGENKPQ 60
Query: 60 EAKKKWIPLRKEWDV---------QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS 110
E K L D+ + IG+LQ NK IV+ ++++ K A L+
Sbjct: 61 ELATKAAELGANLDLCADRNEVSPRWVQIGNLQRNKAKLIVAYGAELQSLDSAKLAQTLN 120
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
+ + R L V I+VNT E K G+ P +T + L + +L++ GLM + +
Sbjct: 121 RLLDQAGRTLEVMIEVNTSGEDAKHGVAPEETLELARLVIDQPRLHLIGLMTVAAHIDRV 180
Query: 171 KPH--FYLLSEIA--RE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F + S++A RE +LSMGM+ DFELAIA+G+T VR+GS +FG R
Sbjct: 181 GECGVFEMFSQLAGLREAVLGLPGGADCRELSMGMSGDFELAIAAGSTCVRVGSALFGPR 240
Query: 219 PC 220
Sbjct: 241 DY 242
>gi|254304213|ref|ZP_04971571.1| possible TIM-barrel fold protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148324405|gb|EDK89655.1| possible TIM-barrel fold protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 223
Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats.
Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + I + V LVAV+K + I L GQ+I ENK+Q
Sbjct: 1 MSIKANVEEILEDI----KKYSPYPEKVKLVAVTKYSSVEDIEKFLETGQIICGENKVQV 56
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K + K ++ FIG+LQ NKV I+ D+I +V++ A + + + S+
Sbjct: 57 IKDKIEYFKEKNKKIKWHFIGNLQKNKVKYIIDDVDLIHSVNKLSLAQEIDKKAEQSSKI 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ V +++N E K G ++ K +I + LN+ G+M + P + + F
Sbjct: 117 MDVLLEINVYGEESKQGYSLDELKCDIIELQNLKNLNIIGVMTMAPFTDDEKILRMVFSE 176
Query: 177 LSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L +I E LT+LSMGM+ D+++A+ G+T +R+G+ IF
Sbjct: 177 LRKIKDELNKEYFNNNLTELSMGMSNDYKIALQEGSTFIRVGTKIF 222
>gi|332363496|gb|EGJ41278.1| cell division protein YlmE [Streptococcus sanguinis SK355]
Length = 223
Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ E + IGSLQ KV ++++ D + K A + +
Sbjct: 61 FLEKYHALKDEK-LTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDKRAE---HVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G + + + + + + + GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFLIEELEVVLPELEKLENVQIVGLMTMAPFEASHEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|223933926|ref|ZP_03625887.1| alanine racemase domain protein [Streptococcus suis 89/1591]
gi|302023462|ref|ZP_07248673.1| hypothetical protein Ssui0_02136 [Streptococcus suis 05HAS68]
gi|330832328|ref|YP_004401153.1| alanine racemase domain-containing protein [Streptococcus suis ST3]
gi|223897403|gb|EEF63803.1| alanine racemase domain protein [Streptococcus suis 89/1591]
gi|329306551|gb|AEB80967.1| alanine racemase domain protein [Streptococcus suis ST3]
Length = 223
Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 97/226 (42%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ + +A A RP +SV ++AV+K VDS ++ G EN++ +
Sbjct: 1 MNFQKNKDAIFSAVAKAAEKAGRPSESVKVIAVTKYVDSSIANQLVNTGITHIGENRVDQ 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L + + IG+LQ KV +I+ D + K A + K +
Sbjct: 61 FLEKYNALADK-QLTWHLIGTLQRRKVKDIIPFVDYFHALDSVKLAQEIDKRATK---IV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLL 177
++QVN E K G ++ + + + GLM + P F +
Sbjct: 117 KCFLQVNVSGEESKHGFAVSEIDAALAEISLLENIELVGLMTMAPIDATDDELDEIFSKI 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
EI E T+LSMGM+ DFE AIA GAT VRIGS F
Sbjct: 177 QEIQEELATRNLPRMPFTELSMGMSGDFERAIAHGATYVRIGSAFF 222
>gi|333027797|ref|ZP_08455861.1| hypothetical protein STTU_5301 [Streptomyces sp. Tu6071]
gi|332747649|gb|EGJ78090.1| hypothetical protein STTU_5301 [Streptomyces sp. Tu6071]
Length = 244
Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats.
Identities = 67/231 (29%), Positives = 104/231 (45%), Gaps = 16/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R + V+L+AV+K + +R+ S G EN+ QEA
Sbjct: 11 LAANLAKVEERIAKACAAAGRSRGDVTLIAVTKTYPASDVRLLSSLGVGQVGENRDQEAG 70
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + FIG LQ+NK + + +V R + A+ L +++ R +
Sbjct: 71 PKAAA-CADLPLTWHFIGQLQTNKAKSVARYASYVHSVDRARLAAPLGAAAVREGREIGA 129
Query: 123 YIQVNTGYE------IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AMGNPKP 172
+QV E + G P++ + V L GLM + P G+ +
Sbjct: 130 LVQVALDAEGDPAAHAGRGGAHPDEVPELVDRIAATEGLRPAGLMTVAPLAGRYAGDARA 189
Query: 173 HFYLLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L+E+ A T +S GM+ D E AIA+GAT VRIGS I G R
Sbjct: 190 AFARLAELASLVRAAHPAATMVSAGMSGDLEEAIAAGATHVRIGSAILGTR 240
>gi|21227777|ref|NP_633699.1| hypothetical protein MM_1675 [Methanosarcina mazei Go1]
gi|20906182|gb|AAM31371.1| conserved protein [Methanosarcina mazei Go1]
Length = 225
Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats.
Identities = 75/230 (32%), Positives = 116/230 (50%), Gaps = 24/230 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + ++ +KI S +LV V+K ++ ++I A+ G I EN++QE
Sbjct: 10 MPVYENTKLILEKI-----------GSTTLVCVTKTIEPERINEAIRAGATIIGENRVQE 58
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K + + IG LQ+NKV + V LFDVI+++ K + + +
Sbjct: 59 YEDKRDDI---LPCETHLIGHLQANKVKKAVHLFDVIQSIDSLKLIQNIDMRARDIDKVQ 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM--GNPKPHFYLLS 178
VY+QVN G E QK G P++ K+ + R + VEGLMCIPP + + +F +
Sbjct: 116 RVYLQVNIGNEPQKYGFRPDEIKNAITEIRSLRNVRVEGLMCIPPFVPPEQTRSYFRKMK 175
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E K + LSMGM+ D+ +AI GAT VR+GS IFG+R
Sbjct: 176 ALFDEIKQENRDNIDIRTLSMGMSSDYRIAIEEGATMVRVGSSIFGKRKY 225
>gi|302326933|gb|ADL26134.1| conserved hypothetical protein TIGR00044 [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 250
Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats.
Identities = 69/249 (27%), Positives = 113/249 (45%), Gaps = 30/249 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + +I+ + +A R ++SV LV VSK ++ + A++ G F EN++QEA+
Sbjct: 1 MREHLAALEARIDEACKIAGRSRESVKLVWVSKFHPAEAVENAIALGATDFGENRVQEAE 60
Query: 63 KKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL----EMIK 115
K+ R D V+ IG +QSNK+ + + D I +++ + L
Sbjct: 61 LKFSEPRTAKDGSRVRCHVIGPVQSNKLKKAALVADCIHSIASIEAVEKLEKVCAAAANG 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC------------RQKYQLNVEGLMCI 163
Q + L + QVN G E KSG+ ++ + F+ L GLM I
Sbjct: 121 QGKVLDILFQVNAGEEETKSGLDVHEAEAFLEDLEKRAGAAADGKSENFPHLRFRGLMTI 180
Query: 164 PPAMG---NPKPHFYLLSEIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGS 212
G + + F L + + +LSMGMT D E+AI G+T +R+G+
Sbjct: 181 GKNTGVAEDSRECFAFLRGLRDKFLAKGGAFAAFDQLSMGMTGDLEVAIEEGSTMIRVGT 240
Query: 213 GIFGERPCQ 221
+FGER
Sbjct: 241 ALFGERDYS 249
>gi|242239592|ref|YP_002987773.1| alanine racemase domain protein [Dickeya dadantii Ech703]
gi|242131649|gb|ACS85951.1| alanine racemase domain protein [Dickeya dadantii Ech703]
Length = 219
Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats.
Identities = 77/206 (37%), Positives = 113/206 (54%), Gaps = 4/206 (1%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW- 72
I+ S R L+ VSK KI+ + G F E+++ EA KW LR ++
Sbjct: 16 IKASVEAVSRAA---RLLVVSKFHTMDKIQPLIHAGHRCFGESRVDEAINKWDALRNQYE 72
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
D++L FIG LQS KV++IV FDVI++V R A +S + ++IQ+N G E
Sbjct: 73 DLELHFIGGLQSRKVAKIVEFFDVIQSVDRASLADKISSCAKSLGKTQKIFIQINIGDEP 132
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMG 192
QKSG+ N D + + +EG+MCIPP + +F +S I + +LSMG
Sbjct: 133 QKSGVSVNDFDDVFAHVSRLDNICIEGVMCIPPNEKDVSVYFSQMSAITEKYHFPQLSMG 192
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ D++LA+ +T VR+GS IFGER
Sbjct: 193 MSNDYKLALCYNSTMVRVGSAIFGER 218
>gi|237740280|ref|ZP_04570761.1| proline synthetase associated protein [Fusobacterium sp. 2_1_31]
gi|229422297|gb|EEO37344.1| proline synthetase associated protein [Fusobacterium sp. 2_1_31]
Length = 223
Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats.
Identities = 63/226 (27%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + I + V L+AV+K + I L GQ I ENK+Q
Sbjct: 1 MSIQASVEEILEDI----KKYSPYPEKVKLIAVTKYSTVEDIEEFLKTGQNICGENKVQV 56
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K + K D++ FIG+LQ NKV I+ I +V++ A ++ + + +
Sbjct: 57 VKDKIEYFKNKNTDIKWHFIGNLQKNKVKYIIDDVVAIHSVNKLSLAQEINKKAEQSGKT 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ V +++N E K G ++ K ++ + LN+ G+M + P + + F
Sbjct: 117 MDVLLEINVYGEESKQGYSLDELKCDIMELKNLKNLNIIGVMTMAPFTDDEKILRMVFSE 176
Query: 177 LSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L +I E LT+LSMGM+ D+++A+ G+T +R+G+ IF
Sbjct: 177 LRKIKDELNKEYFDNNLTELSMGMSNDYKIALQEGSTYIRVGTKIF 222
>gi|325697070|gb|EGD38957.1| cell division protein YlmE [Streptococcus sanguinis SK160]
Length = 223
Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ E ++ IGSLQ KV ++++ D + K A + +
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDKRAE---HVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G + + + + + + GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFLVEDLEVVLPELEKLENIQIVGLMTMTPFEASHEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|270292374|ref|ZP_06198585.1| YlmE protein [Streptococcus sp. M143]
gi|270278353|gb|EFA24199.1| YlmE protein [Streptococcus sp. M143]
Length = 223
Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats.
Identities = 65/226 (28%), Positives = 102/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + Q++ ++ A R SVS++AV+K VD K L G EN++ +
Sbjct: 1 MDLKKNTEFVFQQVAEASREANRDPASVSIIAVTKYVDVKTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L KE+ V IG+LQ KV E++ D + K A + +
Sbjct: 61 FLEKYQTL-KEFPVTWHLIGTLQRRKVKEVIPFVDYFHALDSLKLAQEIQKR---TDHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G + + + Q Q+ GLM + P + F
Sbjct: 117 KCFLQVNISGEESKHGFSKKELLELLPDLAQLDQIEYVGLMTMAPFEADSDELKQIFKKT 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ E + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QELQAEIREKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTAFF 222
>gi|50549285|ref|XP_502113.1| YALI0C21934p [Yarrowia lipolytica]
gi|49647980|emb|CAG82433.1| YALI0C21934p [Yarrowia lipolytica]
Length = 239
Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats.
Identities = 76/207 (36%), Positives = 101/207 (48%), Gaps = 19/207 (9%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
LV VSK + I+ GQ F EN +QE +K L +E +Q FIGSLQSNK +
Sbjct: 26 RLVCVSKYKPASDIQAVYDLGQRHFGENYVQELMEKVANLPQE--IQWHFIGSLQSNKCA 83
Query: 89 EIVSLFD--VIETVSREKTASLLSLEMI----KQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
++ +ETV EK A L+ K + V++QVNT E QKSG+ P
Sbjct: 84 QLAKNIPNLWVETVDGEKKAKKLNDAREQSEYKDKAPVHVFVQVNTSGESQKSGLDPEDV 143
Query: 143 KDFVI-LCRQKYQLNVEGLMCIPPAM----GNPKPHFYLLSEIARECKLT------KLSM 191
V + ++ QL + GLM I F L +I + +LSM
Sbjct: 144 SKVVDYIIKECPQLKLAGLMTIGSIEQSKASEENKDFATLVQIRDSIEQAFDITGLELSM 203
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DFE AI G+T+VRIGS IFG R
Sbjct: 204 GMSSDFEEAIKQGSTNVRIGSTIFGGR 230
>gi|58271268|ref|XP_572790.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134114774|ref|XP_773685.1| hypothetical protein CNBH1400 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256313|gb|EAL19038.1| hypothetical protein CNBH1400 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229049|gb|AAW45483.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 259
Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats.
Identities = 82/249 (32%), Positives = 117/249 (46%), Gaps = 35/249 (14%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + +Q I+N+A +P LVAVSK+ + I+ G F EN +QE
Sbjct: 16 DLRENIAAVQQDIDNAAGTGAKP----RLVAVSKLKPASDIKALYDAGYRHFGENYIQEM 71
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEM-IKQSR 118
K L D++ FIGSLQSNK S+ ++ +ET+S K A LL + +
Sbjct: 72 VDKAAALPD--DIKWHFIGSLQSNKSKLAASVPNLFILETLSSTKVADLLQKSLPPSRQS 129
Query: 119 FLPVYIQVNTGYEIQKSGIMP-----NQTKDFVIL-CRQKYQLNVEGLMCIPPAMGN--- 169
L VY+QVNT E KSG+ P + D + + L + G+M I +
Sbjct: 130 KLNVYLQVNTSGEDSKSGLSPLPSNSAELVDLAMHVIEKCPGLKLLGIMTIGSWDASHDP 189
Query: 170 --PKPHFYLLS----EIARECKLT-----------KLSMGMTRDFELAIASGATSVRIGS 212
P P F L E+A+ +LSMGM+ DF AI G++SVR+G+
Sbjct: 190 TKPNPDFECLKRTRTELAKALAENGVQGAPKEDELELSMGMSADFVQAIKEGSSSVRVGT 249
Query: 213 GIFGERPCQ 221
IFGERP +
Sbjct: 250 RIFGERPKK 258
>gi|159026852|emb|CAO89103.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 219
Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats.
Identities = 72/227 (31%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++++ + + L+AVSK V S IR A G FAE+KLQE
Sbjct: 1 MTIASRIESIRLTL----------PSCTRLIAVSKQVSSDYIRQAYRAGVRDFAESKLQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L+ D+ FIG LQ+NK +++ FD+I ++ K A L +
Sbjct: 51 AISKQQELKDLPDISWHFIGHLQANKARKVLESFDLIHSLDSLKLAQRLDRLASELEINP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLL 177
V +QV + K G + + QL ++GLM I P + G F
Sbjct: 111 QVLLQVKVVPDPDKFGWDKAELIADLPALVNCQQLKIQGLMTILPQGLSAGEKLAAFEKT 170
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
S++A+ + L LSMGM+ D+ LA+ +GAT +R+G+GIFGER
Sbjct: 171 SDLAQIIENSSSLCLPHLSMGMSNDYPLAVKAGATLIRVGTGIFGER 217
>gi|227498577|ref|ZP_03928721.1| alanine racemase [Acidaminococcus sp. D21]
gi|226904033|gb|EEH89951.1| alanine racemase [Acidaminococcus sp. D21]
Length = 234
Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 103/231 (44%), Gaps = 15/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPK---DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
L KL ++KI+ + L K K D V+++AV+K + + AL G EN++Q
Sbjct: 2 LSEKLASVQKKIDEALALRKEKKVTGDMVTILAVTKNHPPEVVTEALDAGLTEIGENRVQ 61
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA K L K IG LQ+NK V FD+IE+ K + L + +
Sbjct: 62 EAMHKQEVLPKRG--HWHLIGHLQTNKAKHAVEHFDLIESADSAKILTHLDRAAEQVGKV 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK-------- 171
V +Q+N E QKSG P + V L V G+M I A +
Sbjct: 120 QDVLLQINEAGESQKSGFQPADFRAIVKTLDAYPHLRVRGVMVIAQATDQVEETRPVFRA 179
Query: 172 --PHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L + + + LSMGMT D+ +A+ GA +R+GS +FG R
Sbjct: 180 GYEDFLFLRDALKHEDVNILSMGMTHDYWIAVEEGANEIRVGSALFGARDY 230
>gi|313890724|ref|ZP_07824349.1| pyridoxal phosphate enzyme, YggS family [Streptococcus
pseudoporcinus SPIN 20026]
gi|313120825|gb|EFR43939.1| pyridoxal phosphate enzyme, YggS family [Streptococcus
pseudoporcinus SPIN 20026]
Length = 223
Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats.
Identities = 61/226 (26%), Positives = 107/226 (47%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + +++ + + A R +++V +VAV+K VD L G AEN++ +
Sbjct: 1 MNLEKNKKSIFEQVHKACVAANRLEENVKVVAVTKHVDISTASALLDIGIKHLAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ DV IGSLQ KV ++++ D + A + +
Sbjct: 61 FLEKYEALKDR-DVTWHLIGSLQRRKVKDVINHVDYFHALDSLNLAKEIQKRAA---HPI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
++QVN E K G P++ + + ++ + GLM I P + + F
Sbjct: 117 NCFLQVNISGEESKHGFSPDEVNLVLPQIAELDKIRLVGLMTIAPLDADSETIHNIFEQA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ +E + T+LSMGM+ D+E+AI GAT VRIG+ F
Sbjct: 177 AQLRQELQRQDRKNMPFTELSMGMSNDYEIAIQHGATFVRIGTSFF 222
>gi|326404445|ref|YP_004284527.1| hypothetical protein ACMV_22980 [Acidiphilium multivorum AIU301]
gi|325051307|dbj|BAJ81645.1| hypothetical protein ACMV_22980 [Acidiphilium multivorum AIU301]
Length = 229
Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats.
Identities = 84/218 (38%), Positives = 121/218 (55%), Gaps = 6/218 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L + +I +A R V+L+AVSK I AL+ GQ++F EN++QEA
Sbjct: 13 TIRPALDSIRARIATAAQ--GRA---VTLIAVSKTKPVAAIEAALAAGQLVFGENRVQEA 67
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ LR + L IG LQ+NK E V+LFD I+++ R K A L+ + +
Sbjct: 68 AAKFPLLRAAHPGLALHLIGPLQTNKAREAVALFDCIDSLDRPKLADALAAAAERAGQMP 127
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ +QVN G E QK+G+ P + F+ R ++ + GLM IPP +P PHF L +
Sbjct: 128 RLLVQVNVGDEPQKAGVSPAEADGFIRAMRARFGERLRGLMAIPPLGEDPAPHFGTLVAM 187
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A L S+GM+ DFE AIA GAT VR+GS +FG R
Sbjct: 188 ADTHGLPVRSIGMSDDFETAIACGATEVRVGSALFGAR 225
>gi|327473400|gb|EGF18820.1| cell division protein YlmE [Streptococcus sanguinis SK408]
Length = 223
Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats.
Identities = 61/226 (26%), Positives = 108/226 (47%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K V + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVGCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ E ++ IGSLQ KV ++++ D + K A + +
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDKRAE---HVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G + + + + + + GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFLVEDLEVVLPELEKLENVQIVGLMTMAPFEASHEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|225704980|gb|ACO08336.1| Proline synthetase co-transcribed bacterial homolog protein
[Oncorhynchus mykiss]
Length = 282
Score = 233 bits (596), Expect = 1e-59, Method: Composition-based stats.
Identities = 77/250 (30%), Positives = 110/250 (44%), Gaps = 30/250 (12%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFA 54
MS +G L ++ +A A+RPK LVAVSK + A G F
Sbjct: 6 MSEEVGKALHAVVDRVNQAA--ARRPKTLPAVPPRLVAVSKTKPPDMVIEAYRKGHRNFG 63
Query: 55 ENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLL 109
EN + E K L +++ FIG LQ N V+ + V ++ETV K A +
Sbjct: 64 ENYVNELVDKASNPQILESCPEIEWHFIGHLQKNNVNRLLGVPNLFMVETVDSAKLADKV 123
Query: 110 S----LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIP 164
+ ++ L + +Q+NT E K G+ P +T + V + L+ GLM I
Sbjct: 124 NSSWQRLRAASTQKLKIMVQINTSGEESKHGLPPGETVNTVKHILSKCSVLHFSGLMTIG 183
Query: 165 ----PAMGNPKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGS 212
P P F L E+ +L +LSMGM+ DFE AI G+T+VR+GS
Sbjct: 184 RYGYDLADGPNPDFQALLSRRQEVCASLQLPLEDVELSMGMSTDFEHAIEVGSTNVRVGS 243
Query: 213 GIFGERPCQT 222
IFG R
Sbjct: 244 TIFGNRDYPN 253
>gi|323352737|ref|ZP_08087707.1| cell division protein YlmE [Streptococcus sanguinis VMC66]
gi|322121773|gb|EFX93519.1| cell division protein YlmE [Streptococcus sanguinis VMC66]
Length = 223
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 61/226 (26%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K +D + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYIDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ E ++ IGSLQ KV ++++ D + K A + +
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDKRAE---HVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G + + + + + + + GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFLIEELEVVLPELEKLDNVQIVGLMTMAPFEASHEELNQMFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|289670426|ref|ZP_06491501.1| hypothetical protein XcampmN_18558 [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 230
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 69/202 (34%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ V L+AVSK ++ + + GQ F EN +QEA+ K LR ++ IG LQS
Sbjct: 22 RTDVRLLAVSKTKPAEAVAGLAAQGQRAFGENYVQEAEAKIAQLRA-LGLEWHLIGHLQS 80
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK FD ++TV R K LL+ L V IQ+N E K G P
Sbjct: 81 NKAELASQCFDWVQTVDRAKLIPLLARHRPDDRAPLNVLIQLNIDDEDSKHGCAPEAIDS 140
Query: 145 FVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIARECK-----LTKLSMGMTRD 196
+ +L + GLM IP P + F + + + K + LSMGM+ D
Sbjct: 141 LAEAIALQPRLQLRGLMAIPAPFPEQARRQAAFTRMQALFEQLKTRHRQVDTLSMGMSSD 200
Query: 197 FELAIASGATSVRIGSGIFGER 218
F AIA+GAT VR+G+ +FG R
Sbjct: 201 FAEAIAAGATMVRVGTALFGAR 222
>gi|325971292|ref|YP_004247483.1| hypothetical protein SpiBuddy_1464 [Spirochaeta sp. Buddy]
gi|324026530|gb|ADY13289.1| protein of unknown function UPF0001 [Spirochaeta sp. Buddy]
Length = 228
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 78/232 (33%), Positives = 118/232 (50%), Gaps = 16/232 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ L + +I +A LA R + + L+AVSK I+ CGQ++F EN++Q
Sbjct: 1 MTDLQRNREELLAEIGQAATLAGRKPEDIKLMAVSKTHPFSAIQELYGCGQLVFGENRVQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E ++K+ LR +Q+ IG LQ+NK + + LFD I++V K A L K
Sbjct: 61 EVEQKFPSLRPSL-MQVHLIGHLQTNKAKKALELFDGIDSVDSLKLAQKLEALAEK---P 116
Query: 120 LPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+ + +++ T E KSG + + + + V+GLM I P GN + F
Sbjct: 117 VSILLELRTAPEETKSGFENETELFRALDVLSTFSNVRVKGLMTIGPLHGNEKEIREAFS 176
Query: 176 LLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LL E A K + LSMGM+ DF LAIA G+T +R+GS +FG+R
Sbjct: 177 LLRETAERAKVRFSHLDFSTLSMGMSSDFRLAIAEGSTQIRVGSRLFGKREA 228
>gi|332522624|ref|ZP_08398876.1| pyridoxal phosphate enzyme, YggS family [Streptococcus porcinus
str. Jelinkova 176]
gi|332313888|gb|EGJ26873.1| pyridoxal phosphate enzyme, YggS family [Streptococcus porcinus
str. Jelinkova 176]
Length = 223
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + +++ + I A R ++SV +VAV+K VD L G AEN++ +
Sbjct: 1 MNLEQNKKTIFEQVHKACIAADRLEESVKVVAVTKHVDISTASALLDNGVKHLAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ DV IGSLQ KV ++++ D + A + +
Sbjct: 61 FLEKYDALKDR-DVTWHLIGSLQRRKVKDVINRVDYFHALDSLNLAKEIQKRA---DHPI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K G P++ + + ++ + GLM + P + + F
Sbjct: 117 NCFLQVNISGEKSKHGFSPDEVNLVLPQIAELNKIRLVGLMTMAPLDADSEIIHDIFEQA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E + T+LSMGM+ D+E+AI GAT VRIG+ F
Sbjct: 177 KQLRQELQQQDRKNMPFTELSMGMSNDYEIAIQHGATFVRIGTSFF 222
>gi|218289917|ref|ZP_03494107.1| alanine racemase domain protein [Alicyclobacillus acidocaldarius
LAA1]
gi|218240057|gb|EED07243.1| alanine racemase domain protein [Alicyclobacillus acidocaldarius
LAA1]
Length = 229
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 65/222 (29%), Positives = 108/222 (48%), Gaps = 11/222 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++ + ++E + + R V +VAV+K + + G EN+ Q A+
Sbjct: 6 VRQRVEEIRAQVEAACRRSGRDPAGVRIVAVTKTASPDVLPALHAAGIRDAGENRWQIAR 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K FIG+LQ+NKV +V F I ++ R + A LS E +++ + V
Sbjct: 66 DKLAH-PAASGFHWHFIGTLQTNKVKYVVPRFAWIHSLDRPELAHALSEEAVRRGVVVNV 124
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
+QVN E QK G+ P+ + + L R+ L+V GLM + P P+ F L
Sbjct: 125 LVQVNISGEAQKHGVAPDDAETLIRLARELPGLSVRGLMTMAPITERPEDVRYVFAGLRA 184
Query: 180 IARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ + + L +LSMGM+ DFE+A+ GAT +RIG +
Sbjct: 185 LMHDLRSRLSLETLDQLSMGMSDDFEVAVEEGATMIRIGRRL 226
>gi|30263902|ref|NP_846279.1| hypothetical protein BA_4039 [Bacillus anthracis str. Ames]
gi|47529332|ref|YP_020681.1| hypothetical protein GBAA_4039 [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186750|ref|YP_030002.1| hypothetical protein BAS3751 [Bacillus anthracis str. Sterne]
gi|49478440|ref|YP_037962.1| hypothetical protein BT9727_3642 [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|65321229|ref|ZP_00394188.1| COG0325: Predicted enzyme with a TIM-barrel fold [Bacillus
anthracis str. A2012]
gi|118479120|ref|YP_896271.1| hypothetical protein BALH_3530 [Bacillus thuringiensis str. Al
Hakam]
gi|165872302|ref|ZP_02216939.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0488]
gi|167636418|ref|ZP_02394717.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0442]
gi|167641121|ref|ZP_02399376.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0193]
gi|170688830|ref|ZP_02880033.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0465]
gi|170708807|ref|ZP_02899243.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0389]
gi|177654885|ref|ZP_02936602.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0174]
gi|190565832|ref|ZP_03018751.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis
Tsiankovskii-I]
gi|196035936|ref|ZP_03103338.1| conserved hypothetical protein TIGR00044 [Bacillus cereus W]
gi|196045910|ref|ZP_03113139.1| conserved hypothetical protein TIGR00044 [Bacillus cereus 03BB108]
gi|218905030|ref|YP_002452864.1| conserved hypothetical protein TIGR00044 [Bacillus cereus AH820]
gi|225865882|ref|YP_002751260.1| conserved hypothetical protein TIGR00044 [Bacillus cereus 03BB102]
gi|227813190|ref|YP_002813199.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
CDC 684]
gi|229603782|ref|YP_002868136.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0248]
gi|254683390|ref|ZP_05147250.1| hypothetical protein BantC_06015 [Bacillus anthracis str.
CNEVA-9066]
gi|254721434|ref|ZP_05183223.1| hypothetical protein BantA1_03095 [Bacillus anthracis str. A1055]
gi|254735940|ref|ZP_05193646.1| hypothetical protein BantWNA_12346 [Bacillus anthracis str. Western
North America USA6153]
gi|254739812|ref|ZP_05197505.1| hypothetical protein BantKB_02134 [Bacillus anthracis str. Kruger
B]
gi|254751002|ref|ZP_05203041.1| hypothetical protein BantV_00982 [Bacillus anthracis str. Vollum]
gi|254757940|ref|ZP_05209967.1| hypothetical protein BantA9_06520 [Bacillus anthracis str.
Australia 94]
gi|30258546|gb|AAP27765.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
Ames]
gi|47504480|gb|AAT33156.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
'Ames Ancestor']
gi|49180677|gb|AAT56053.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
Sterne]
gi|49329996|gb|AAT60642.1| conserved hypothetical protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|118418345|gb|ABK86764.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
Hakam]
gi|164711978|gb|EDR17518.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0488]
gi|167510901|gb|EDR86292.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0193]
gi|167528160|gb|EDR90947.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0442]
gi|170126292|gb|EDS95183.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0389]
gi|170667185|gb|EDT17945.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0465]
gi|172080396|gb|EDT65483.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0174]
gi|190562751|gb|EDV16717.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis
Tsiankovskii-I]
gi|195991585|gb|EDX55551.1| conserved hypothetical protein TIGR00044 [Bacillus cereus W]
gi|196023350|gb|EDX62028.1| conserved hypothetical protein TIGR00044 [Bacillus cereus 03BB108]
gi|218537784|gb|ACK90182.1| conserved hypothetical protein TIGR00044 [Bacillus cereus AH820]
gi|225787955|gb|ACO28172.1| conserved hypothetical protein TIGR00044 [Bacillus cereus 03BB102]
gi|227004092|gb|ACP13835.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
CDC 684]
gi|229268190|gb|ACQ49827.1| conserved hypothetical protein TIGR00044 [Bacillus anthracis str.
A0248]
Length = 224
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 108/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQTNLTTVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + V FIGSLQ+ KV EI++ D + ++ R A + ++ +
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRA---NKKV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+IQV T E K G+ +T F+ ++ ++ V GLM + P + F L
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKEL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ +E + +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQKEVQGLELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|198414039|ref|XP_002124883.1| PREDICTED: similar to Proline synthetase co-transcribed bacterial
homolog protein [Ciona intestinalis]
Length = 250
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 71/241 (29%), Positives = 109/241 (45%), Gaps = 25/241 (10%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVS----LVAVSKMVDSKKIRVALSCGQVIFAENK 57
+ L + I+++ RP+ + LVAVSK I+ A GQ F EN
Sbjct: 7 DIAANLAGIRTGIDSAVQK--RPQTVPTVQPILVAVSKTKPLSLIKQAYDAGQRHFGENY 64
Query: 58 LQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLE 112
L+E K D++ +IG+ Q S + VS ++ET++ K A ++
Sbjct: 65 LKELVVKSNSPDMAELCPDIKWHYIGTFQKKMASVLMRVSNLHMLETLNGAKEADAVNSR 124
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN-- 169
K + L V +QVNT E KSG+ ++ + R L + GLM I +
Sbjct: 125 W-KSTEPLQVLVQVNTSGEESKSGVTASECTELAGHIHRNCSNLKLAGLMTIGSFGYDCT 183
Query: 170 --PKPHFYLLSE----IARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P P F L+E + +E + + LSMGM+ D+ AI G+T VR+G+ IFG R
Sbjct: 184 QGPNPDFTKLAECRKTVCKELGIPEKDLQLSMGMSHDYTHAIEMGSTMVRVGTAIFGARD 243
Query: 220 C 220
Sbjct: 244 Y 244
>gi|72389014|ref|XP_844802.1| hypothetical protein [Trypanosoma brucei TREU927]
gi|62176349|gb|AAX70461.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70801336|gb|AAZ11243.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|261328062|emb|CBH11039.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 257
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 79/241 (32%), Positives = 110/241 (45%), Gaps = 33/241 (13%)
Query: 3 LGNKLQVFKQKIEN---------SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIF 53
+ + ++ I SA A V LVAVSK ++ CG F
Sbjct: 15 IAENYREVQKCIREAAAEGAGGGSADRA------VKLVAVSKTKSPACLQALYDCGHRDF 68
Query: 54 AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD---VIETVSREKTASLLS 110
EN +QE +K L D+ FIG LQSNKV E++S +++TV E A L
Sbjct: 69 GENYVQEVVEKAAVLP--GDIHWHFIGHLQSNKVKELLSGVSGLQIVQTVDSESLAQKLD 126
Query: 111 LEMI--KQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCR-QKYQLNVEGLMCIPPA 166
+ + R L VY+QVNT E KSG+ P + T + + L + GLM I
Sbjct: 127 SGCVSYRGGRPLDVYVQVNTSGETTKSGVEPGSATVELARHISTKCPNLRLTGLMTIGMP 186
Query: 167 MGNPKPH-FYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+P F L E+A L LSMGM+ D+ AI G+T VR+G+G+FG+
Sbjct: 187 DYTSRPENFECLLRCREEVAAALNLDATTLALSMGMSGDYTNAIRMGSTVVRVGTGLFGQ 246
Query: 218 R 218
R
Sbjct: 247 R 247
>gi|260425972|ref|ZP_05779951.1| pyridoxal phosphate enzyme, YggS family [Citreicella sp. SE45]
gi|260420464|gb|EEX13715.1| pyridoxal phosphate enzyme, YggS family [Citreicella sp. SE45]
Length = 189
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 80/188 (42%), Positives = 112/188 (59%), Gaps = 2/188 (1%)
Query: 34 SKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVS 92
SK+ +++ L G +F ENK+QEA+ KW ++ V + IG LQ+NK + +
Sbjct: 2 SKVQPLERVEAVLEEGHRLFGENKVQEARGKWPEFISRFEGVSVHLIGPLQTNKARQAME 61
Query: 93 LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK 152
LF I +V R K A+ ++ + + +++QVNTG E QK+G++P + F+ R
Sbjct: 62 LFSAIHSVDRPKLATTIARLAQEMGQCPDLFLQVNTGEEPQKAGVLPAEADAFIAEVRAL 121
Query: 153 YQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGS 212
L V+GLMCIPPA P HF LL++IA L LSMGM+ DFE AIA GAT VR+GS
Sbjct: 122 D-LPVKGLMCIPPAEETPSLHFALLAKIAERNGLAGLSMGMSSDFEEAIALGATHVRVGS 180
Query: 213 GIFGERPC 220
IFGER
Sbjct: 181 AIFGERDY 188
>gi|326577686|gb|EGE27562.1| putative alanine racemase [Moraxella catarrhalis O35E]
Length = 236
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 72/228 (31%), Positives = 101/228 (44%), Gaps = 16/228 (7%)
Query: 3 LGNKLQVFKQKIENSAILA------KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
L ++ KQ + + A RP L+AVSK I+ GQ F EN
Sbjct: 12 LLTNYRLIKQALNTANDQAVQMNPTHRPA---KLIAVSKTKPVAMIQTLFHQGQQDFGEN 68
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
LQEA K L + + +IGS+Q NK +I FD + T+ RE A L+ +
Sbjct: 69 YLQEALGKISQLSQLP-IIWHYIGSIQRNKTRDIAKHFDWVHTLEREIIAQRLNEQRA-G 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP-----AMGNPK 171
+ L V IQ+N E KSG P + + LN+ G+M IP A K
Sbjct: 127 MQPLNVLIQINIDDESSKSGCKPTELPTLIEQIINYKNLNLRGVMVIPSQQTVDAFARTK 186
Query: 172 PHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F ++ +SMGM+ D A+ G+T VR+G+ IFGER
Sbjct: 187 VLFDAMARRFDLPNWDTISMGMSGDMTQAVVHGSTMVRVGTAIFGERD 234
>gi|299532897|ref|ZP_07046284.1| hypothetical protein CTS44_18927 [Comamonas testosteroni S44]
gi|298719121|gb|EFI60091.1| hypothetical protein CTS44_18927 [Comamonas testosteroni S44]
Length = 240
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 78/236 (33%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N L ++ + A RP SV L+AVSK + +R A+ GQ F EN +QEA
Sbjct: 3 TIENNLGQIHARMAAACASASRPVTSVQLLAVSKTFGADAVREAVLAGQRSFGENYIQEA 62
Query: 62 KKKWIP-----LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+K L +Q IG +QSNK + FD +TV R K A LS + +
Sbjct: 63 VEKIAAVRAMQLAGGQALQWHCIGPIQSNKTRLVAENFDWAQTVDRLKIAERLSAQRPQG 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF-- 174
L V IQVN KSG+M Q + + L + G+M IP + +
Sbjct: 123 MARLNVCIQVNVDGGATKSGVMAEQALELAQAMVKLPNLQLRGIMSIPDDAPDFEAQCVV 182
Query: 175 -YLLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ K LSMGMT D E A+A+G+T VR+GSGIFG+R
Sbjct: 183 HKKAKAVFESIKASGLAGLEHFDTLSMGMTGDLEAAVAAGSTMVRVGSGIFGKRSY 238
>gi|253745137|gb|EET01241.1| PLP dependent enzymes class III [Giardia intestinalis ATCC 50581]
Length = 220
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 73/227 (32%), Positives = 110/227 (48%), Gaps = 21/227 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+S+ + L+ K +I N+ L+AVSK + A + GQ +F EN +QE
Sbjct: 2 LSVADALKAIKAEIGNA-----------KLIAVSKTKPIGAVLEAYAAGQRLFGENYVQE 50
Query: 61 AKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSR 118
K + D++ FIG LQ+NKV ++ + + I+TV ++ A L+
Sbjct: 51 LIGKTEATQDVASDIEWHFIGHLQTNKVRDVALIPNCVIQTVDSDRLARRLNDARPDNLD 110
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL- 177
L V IQ+NT E KSG + +L + GLM I G+P+ F L
Sbjct: 111 LLRVMIQINTSGESTKSGCTAEDAIELAQTIMTLPRLRLIGLMTIGAP-GSPEASFRALV 169
Query: 178 ---SEIARECKLTK---LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ I + K + LSMGM+ D++LA+ GA VRIG+ IFGER
Sbjct: 170 DARNAIEQVVKPEERLKLSMGMSTDYQLAVQMGADYVRIGTAIFGER 216
>gi|148261046|ref|YP_001235173.1| alanine racemase domain-containing protein [Acidiphilium cryptum
JF-5]
gi|146402727|gb|ABQ31254.1| alanine racemase domain protein [Acidiphilium cryptum JF-5]
Length = 229
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 84/218 (38%), Positives = 120/218 (55%), Gaps = 6/218 (2%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L + +I +A R V+L+AVSK I AL+ GQ++F EN++QEA
Sbjct: 13 TIRPALDSIRARIATAAQ--GRA---VTLIAVSKTKPVAAIEAALAAGQLVFGENRVQEA 67
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ LR + L IG LQ+NK E V+LFD I+++ R K A L+ + R
Sbjct: 68 AAKFPLLRAAHPGLALHLIGPLQTNKAREAVALFDCIDSLDRPKLADALAAAAERAGRMP 127
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ +QVN G E QK+G+ + F+ R ++ + GLM IPP +P PHF L +
Sbjct: 128 RLLVQVNVGDEPQKAGVSLAEADGFIRAMRARFGERLRGLMAIPPLGEDPAPHFRTLVAM 187
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
A L S+GM+ DFE AIA GAT VR+GS +FG R
Sbjct: 188 ADTHGLPVRSIGMSDDFETAIACGATEVRVGSALFGAR 225
>gi|159114248|ref|XP_001707349.1| Hypothetical protein, enzyme with a TIM-barrel fold [Giardia
lamblia ATCC 50803]
gi|157435453|gb|EDO79675.1| hypothetical protein, enzyme with a TIM-barrel fold [Giardia
lamblia ATCC 50803]
Length = 230
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 21/229 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L+ + + ++ L+AVSK + I A + GQ +F EN +QE
Sbjct: 3 TVAGALRDIRAGLGHA-----------KLIAVSKTKPVEAILEAYAAGQRLFGENYVQEL 51
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRF 119
KK ++ D++ FIG LQ+NK ++ + + + +TV ++ A LS +
Sbjct: 52 VKKAEAVQGVASDIEWHFIGHLQTNKARDVAFIPNCVVQTVDSDRLARRLSELRPDELGP 111
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E+ KSG + L +L + GLM I + + F L +
Sbjct: 112 LRVMIQINISGELTKSGCTVEDAIELAQLISALPRLRLIGLMTIGAPDAS-EYSFRALVD 170
Query: 180 ----IARECKLT---KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
I + KL +LSMGM+ D++LA+ GA VR+GS IFGER
Sbjct: 171 ARNVIEQAVKLEEKLELSMGMSSDYQLAVKMGADYVRVGSAIFGERTYS 219
>gi|304382896|ref|ZP_07365378.1| YggS family pyridoxal phosphate enzyme [Prevotella marshii DSM
16973]
gi|304335921|gb|EFM02169.1| YggS family pyridoxal phosphate enzyme [Prevotella marshii DSM
16973]
Length = 225
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 65/231 (28%), Positives = 100/231 (43%), Gaps = 26/231 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L + V LVA+SK ++ I A GQ IF E+ QE
Sbjct: 5 DIARNLHEVLDTL----------PTGVKLVAISKYHPNEYIETAYREGQRIFGESHEQEL 54
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
KK L K D+ FIG LQ+NKV IV +IE V K ++ + K R +
Sbjct: 55 AKKHDALPK--DIAWHFIGHLQTNKVKYIVPYISMIEAVDSLKLLKEINKQAAKHERVVK 112
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPK---PHFYL 176
V +++ E K G+ N + + R+ + + GLM + + + K F
Sbjct: 113 VLLELRVAQEATKYGLSFNDCRALLEAGEWREMKHVKLCGLMTMASHVSDEKQITEEFTR 172
Query: 177 LSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ E K + S GM++D+ +AI +T VR+G+ IFGER
Sbjct: 173 AADFFDEVKSRYFKEDADFKERSWGMSQDYPIAIKCRSTMVRVGTRIFGER 223
>gi|289423142|ref|ZP_06424957.1| pyridoxal phosphate enzyme, YggS family [Peptostreptococcus
anaerobius 653-L]
gi|289156473|gb|EFD05123.1| pyridoxal phosphate enzyme, YggS family [Peptostreptococcus
anaerobius 653-L]
Length = 233
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 69/232 (29%), Positives = 120/232 (51%), Gaps = 14/232 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
SL + L+ + I A+ + R S+ L+ V+K VD + A+ G ENK QE
Sbjct: 3 SLKDNLERVRASINQVALSSNRDPKSILLLGVTKTVDVDVVESAIELGVEEVGENKPQEL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K+ ++ V+ IGSLQ+NKV I+ ++I ++ R + A ++L + R +
Sbjct: 63 ARKYDIIKDR--VKWHQIGSLQTNKVKYIIDKVELIHSLDRVRLADEINLRADRIDRDIK 120
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+QVN E K G+ P+ +DFV C ++ + G+M + A + + F L
Sbjct: 121 CLVQVNMSGEESKHGLRPSDVEDFVRYCSSNCPRIRIVGMMTMAAADADEKGVRACFRGL 180
Query: 178 SEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++++ K+ +LSMGM+ D+++AI G+T VR+G+ IFG+R
Sbjct: 181 RDLSQSIDRLGLDNVKMKELSMGMSGDYKIAIEEGSTIVRVGTSIFGKRDYS 232
>gi|69244709|ref|ZP_00602973.1| Protein of unknown function UPF0001 [Enterococcus faecium DO]
gi|257879371|ref|ZP_05659024.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257881763|ref|ZP_05661416.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257890197|ref|ZP_05669850.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257893525|ref|ZP_05673178.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|260558813|ref|ZP_05831002.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|261206523|ref|ZP_05921223.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289565433|ref|ZP_06445882.1| YggS family pyridoxal phosphate enzyme [Enterococcus faecium
D344SRF]
gi|293553190|ref|ZP_06673827.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
E1039]
gi|293560469|ref|ZP_06676961.1| conserved hypothetical protein [Enterococcus faecium E1162]
gi|293568295|ref|ZP_06679619.1| conserved hypothetical protein [Enterococcus faecium E1071]
gi|294614706|ref|ZP_06694608.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
E1636]
gi|294618996|ref|ZP_06698491.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
E1679]
gi|294621608|ref|ZP_06700773.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
U0317]
gi|314937866|ref|ZP_07845182.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133a04]
gi|314941357|ref|ZP_07848250.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133C]
gi|314950116|ref|ZP_07853402.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0082]
gi|314951343|ref|ZP_07854397.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133A]
gi|314992826|ref|ZP_07858227.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133B]
gi|314997986|ref|ZP_07862881.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133a01]
gi|68196300|gb|EAN10729.1| Protein of unknown function UPF0001 [Enterococcus faecium DO]
gi|257813599|gb|EEV42357.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257817421|gb|EEV44749.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257826557|gb|EEV53183.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257829904|gb|EEV56511.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|260075272|gb|EEW63585.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|260079233|gb|EEW66924.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289162762|gb|EFD10613.1| YggS family pyridoxal phosphate enzyme [Enterococcus faecium
D344SRF]
gi|291589007|gb|EFF20831.1| conserved hypothetical protein [Enterococcus faecium E1071]
gi|291592444|gb|EFF24051.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
E1636]
gi|291594657|gb|EFF26039.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
E1679]
gi|291598773|gb|EFF29825.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
U0317]
gi|291602600|gb|EFF32815.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
E1039]
gi|291605617|gb|EFF35059.1| conserved hypothetical protein [Enterococcus faecium E1162]
gi|313587998|gb|EFR66843.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133a01]
gi|313592630|gb|EFR71475.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133B]
gi|313596560|gb|EFR75405.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133A]
gi|313599780|gb|EFR78623.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133C]
gi|313642724|gb|EFS07304.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0133a04]
gi|313643557|gb|EFS08137.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
TX0082]
Length = 225
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 67/224 (29%), Positives = 112/224 (50%), Gaps = 14/224 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + LQ KQ+I++S L R V+LVAV+K V+S + + G + AEN++ +
Sbjct: 2 IADNLQKIKQEIQDSCALVHRDPKEVTLVAVTKSVESAQAEELVRAGVMNCAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L +++ IG+LQ KV IV+ D + + A + + K+ L
Sbjct: 62 EKKQDLFDFPEIKWHLIGNLQRRKVKLIVNEIDYFHALDSLRLAEEIQKRLEKE---LSC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSE 179
+I+VN E K GI P++ FV ++ V GLM + P + + F L E
Sbjct: 119 FIEVNVSGEESKHGISPDELLPFVESLAACTKIKVVGLMTMAPKEASDEQIHKVFGTLKE 178
Query: 180 IARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + +LSMGM++DF++AI GAT +R+G+ +F
Sbjct: 179 LRDLVQAKGYAHAPCSELSMGMSQDFQIAIEEGATFIRVGTALF 222
>gi|322392780|ref|ZP_08066238.1| cell division protein YlmE [Streptococcus peroris ATCC 700780]
gi|321144358|gb|EFX39761.1| cell division protein YlmE [Streptococcus peroris ATCC 700780]
Length = 223
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 96/226 (42%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L Q++ + R SVS++AV+K VD + G EN++ +
Sbjct: 1 MDLKENTNQVFQQVTKAIQETGRKDGSVSVIAVTKYVDIATAANLIDQGVKHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L DV IGSLQ KV +I+ D + K A + +R +
Sbjct: 61 FLEKYHALSDR-DVTWHLIGSLQRRKVKDIIPYVDYFHALDSLKLAQEIQKRA---NRKV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G + + Q+ GLM + P + F
Sbjct: 117 KCFLQVNISGEESKHGFSKEELLTVLQDLSSLDQIEYVGLMTMAPFDAQTEELQKIFKET 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ + + +T+LSMGM+RDF+ AI G+T VRIG+ F
Sbjct: 177 QELQQYIREQELPNMPMTELSMGMSRDFKEAIQCGSTFVRIGTAFF 222
>gi|289177628|gb|ADC84874.1| proline synthetase-associated protein [Bifidobacterium animalis
subsp. lactis BB-12]
Length = 297
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 67/263 (25%), Positives = 110/263 (41%), Gaps = 44/263 (16%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + A RP V L+A +K D +I A+ G + EN+ QE
Sbjct: 35 IADGVHRVMDRIAAAEERAGRPAGDVRLLAATKTRDVGEIMAAIDAGVPMIGENRPQEVV 94
Query: 63 KKW--------------------------------IPLRKEWDVQLRFIGSLQSNKVSEI 90
K L++ + IG LQSNK+S+I
Sbjct: 95 AKIDGLRYQCKQRGYVIGAYDFDLTVDADPTYAEPEDLKEAPFIPFHLIGQLQSNKISKI 154
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
+ + +E+V + A ++ + + R + V ++VN E KSG P+Q +
Sbjct: 155 LPTVNTVESVDSLELAEKIARRCMVRGRSMGVLLEVNESGEESKSGCAPDQALELAEQIA 214
Query: 151 QKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIARECK---------LTKLSMGMTRDFE 198
+ ++GLM + + + + F L + + +LSMGM+ D E
Sbjct: 215 ALGGVELQGLMTVGAHVRDERRIREGFAHLRGLRERIQSLGMPGTARCVELSMGMSGDLE 274
Query: 199 LAIASGATSVRIGSGIFGERPCQ 221
AIA GAT VR+GS IFGER +
Sbjct: 275 YAIAEGATIVRVGSAIFGERDFK 297
>gi|301055391|ref|YP_003793602.1| hypothetical protein BACI_c38560 [Bacillus anthracis CI]
gi|300377560|gb|ADK06464.1| conserved hypothetical protein [Bacillus cereus biovar anthracis
str. CI]
Length = 224
Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 108/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQTNLTNVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + V FIGSLQ+ KV EI++ D + ++ R A + ++ +
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRA---NKKV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+IQV T E K G+ +T F+ ++ ++ V GLM + P + F L
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKEL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ +E + +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQKEVQGLELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|319442517|ref|ZP_07991673.1| alanine racemase domain protein [Corynebacterium variabile DSM
44702]
Length = 258
Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats.
Identities = 68/240 (28%), Positives = 104/240 (43%), Gaps = 24/240 (10%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ + +++ +A A R V L+ VSK V +++R A+ G AENK QE +
Sbjct: 19 RARWDAVRARVDEAARAAGRDPAEVRLLPVSKTVPVERLRPAVDAGMTELAENKPQEIGR 78
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS------ 117
K + + V+ IG LQ+NK + + + + A L +
Sbjct: 79 KAVEMADLP-VRWVAIGHLQTNKAKIVAEHAAEFQALDSVRLAEALQRRLEALDETADGP 137
Query: 118 -----RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-- 170
R L V +QVNT E K+G P + + + +L V G M + +
Sbjct: 138 ADGPARTLDVLVQVNTSGEDTKTGASPEEVDAILEAAARCDRLRVRGFMTVAVHSEDEAE 197
Query: 171 -KPHFYLLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ F L I + LT+LSMGM+ DF LAIA GAT VR+G+ +FG R
Sbjct: 198 VRACFAQLRGILERARERAVVDPVLLTELSMGMSGDFPLAIAEGATCVRVGTALFGARDY 257
>gi|189485622|ref|YP_001956563.1| hypothetical protein TGRD_619 [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170287581|dbj|BAG14102.1| conserved hypothetical protein [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 231
Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats.
Identities = 74/228 (32%), Positives = 111/228 (48%), Gaps = 11/228 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+ + I+N+ AK V L+AV+K + I AL C E+K++EA K+
Sbjct: 3 NIHRNIEFIKNTVNSAKNTSVVVELIAVTKTFPYQCILEALKCEIKHIGESKIKEALPKF 62
Query: 66 IPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
L + FIG LQSNKV + V FD+I ++ K A +SL + I
Sbjct: 63 EQLGSSLVGITKHFIGHLQSNKVKKAVENFDLIHSLDSVKLAGSISLYAANIDKLQNCLI 122
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIA 181
+V EI K+G+ PN +DF C + ++GLM I P NP +P+F + +
Sbjct: 123 EVKVSQEITKTGVNPNYVEDFYKQCLSIPNILIKGLMVIAPYSDNPEDSRPYFKQVYNLF 182
Query: 182 RECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ LSMGM+ D+++A+ GAT +RIGS IFG+R
Sbjct: 183 ENIRKSYGSSEFNILSMGMSDDYKIAVEEGATMIRIGSAIFGKRNYGN 230
>gi|52141588|ref|YP_085241.1| hypothetical protein BCZK3659 [Bacillus cereus E33L]
gi|51975057|gb|AAU16607.1| conserved hypothetical protein [Bacillus cereus E33L]
Length = 224
Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 108/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQTNLTTVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + V FIGSLQ+ KV EI++ D + ++ R A + ++ +
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRA---NKKV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+IQV T E K G+ +T F+ ++ ++ V GLM + P + F L
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETVTFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKEL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ +E + +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQKEVQGLELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|261879479|ref|ZP_06005906.1| K+ uptake protein [Prevotella bergensis DSM 17361]
gi|270333904|gb|EFA44690.1| K+ uptake protein [Prevotella bergensis DSM 17361]
Length = 224
Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats.
Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 26/231 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L+ + V LVA+SK ++ I A + GQ IF E++ QE
Sbjct: 4 DVAKNLKEVL----------GNLPEGVQLVAISKFHPNEYIEAAYAAGQRIFGESREQEL 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L K D+Q FIG LQ NKV I +IE+V K ++ + K +R +
Sbjct: 54 RLKAEQLPK--DIQWHFIGHLQGNKVKSIAPYISMIESVDTFKLMKEINKQAEKNNRVID 111
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFV--ILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
+ ++++ E K G + + L +Q + + GLM + + +
Sbjct: 112 ILLELHVADEETKFGFSFEACRSMLAEALWKQMANIRIRGLMMMASNVEDENQIASEMNK 171
Query: 177 LSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ E K ++ S GM+ D+++A+ +T VR+G+ IFG R
Sbjct: 172 AADFFDEVKRDYFADADYFSERSWGMSHDYQIAVKCRSTMVRVGTTIFGAR 222
>gi|294791193|ref|ZP_06756350.1| pyridoxal phosphate enzyme, YggS family [Scardovia inopinata F0304]
gi|294457664|gb|EFG26018.1| pyridoxal phosphate enzyme, YggS family [Scardovia inopinata F0304]
Length = 259
Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats.
Identities = 66/230 (28%), Positives = 105/230 (45%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +A A R V L+A +K D +I A++ G + EN+ QE
Sbjct: 27 IAENVHRCLDSLAQAADQAGRRPSDVQLLAATKTRDVGEIMAAVTAGITLIGENRPQEVV 86
Query: 63 KKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K +R E + IG LQSNK+++I+ D IE+V A +S + +
Sbjct: 87 LKGGAIRAESTSPLGFHLIGQLQSNKINKILPYVDTIESVDSASLARKISDRALAAGKTA 146
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++++VN E KSG P Q L + GLM + P + + + + L
Sbjct: 147 RIFLEVNVSGEESKSGCQPQQVGQLADQIASLPALTLAGLMTVGPHVTDESAIRHAYSDL 206
Query: 178 SEIAREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ T LSMGM++D+ LA+A GAT VR+G+ IFG R
Sbjct: 207 RQLRDGLLEQNDPAWASCTDLSMGMSQDYPLAVAEGATIVRLGTAIFGPR 256
>gi|88809280|ref|ZP_01124789.1| hypothetical protein WH7805_06291 [Synechococcus sp. WH 7805]
gi|88787222|gb|EAR18380.1| hypothetical protein WH7805_06291 [Synechococcus sp. WH 7805]
Length = 216
Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats.
Identities = 64/197 (32%), Positives = 95/197 (48%), Gaps = 3/197 (1%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V L+AVSK + IR ++CGQ+ F E+++QEA K LR ++ FIG LQ+
Sbjct: 16 PSEVKLLAVSKGHPADAIRDLVACGQLDFGESRVQEALPKQDALRDLPQIRWHFIGRLQA 75
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV +V F I ++ A S +++ + +QV + K G +D
Sbjct: 76 NKVRAVVKAFSWIHSIDSLALAQRASRIALEEQQLPTALLQVKLRDDPAKGGWEIEALQD 135
Query: 145 FVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI 201
+ L + GLM + P A + F E+A L SMGM+ D+ A
Sbjct: 136 AWPELQTLQGLQISGLMTMAPMGVAAEDRSELFRECRELANSLGLQHCSMGMSGDWHEAA 195
Query: 202 ASGATSVRIGSGIFGER 218
A+GAT VR+GS +FG R
Sbjct: 196 AAGATWVRLGSVLFGPR 212
>gi|257885183|ref|ZP_05664836.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257821035|gb|EEV48169.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
Length = 225
Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats.
Identities = 67/224 (29%), Positives = 112/224 (50%), Gaps = 14/224 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + LQ KQ+I++S L R V+LVAV+K V+S + + G + AEN++ +
Sbjct: 2 IADNLQKIKQEIQDSCALVHRDPKEVTLVAVTKSVESAQAEELVRAGVMNCAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L +++ IG+LQ KV IV+ D + + A + + K+ L
Sbjct: 62 QKKQDLFDFPEIKWHLIGNLQRRKVKLIVNEIDYFHALDSLRLAEEIQKRLEKE---LSC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSE 179
+I+VN E K GI P++ FV ++ V GLM + P + + F L E
Sbjct: 119 FIEVNVSGEESKHGISPDELLPFVESLAACTKIKVVGLMTMAPKEASDEQIHKVFGTLKE 178
Query: 180 IARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + +LSMGM++DF++AI GAT +R+G+ +F
Sbjct: 179 LRDLVQAKGYAHAPCSELSMGMSQDFQIAIEEGATFIRVGTALF 222
>gi|227550462|ref|ZP_03980511.1| alanine racemase domain protein [Enterococcus faecium TX1330]
gi|257888490|ref|ZP_05668143.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257897135|ref|ZP_05676788.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|257899133|ref|ZP_05678786.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|293377358|ref|ZP_06623562.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
PC4.1]
gi|227180363|gb|EEI61335.1| alanine racemase domain protein [Enterococcus faecium TX1330]
gi|257824544|gb|EEV51476.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257833700|gb|EEV60121.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|257837045|gb|EEV62119.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|292644050|gb|EFF62156.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium
PC4.1]
Length = 225
Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats.
Identities = 67/224 (29%), Positives = 112/224 (50%), Gaps = 14/224 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + LQ KQ+I++S L R V+LVAV+K V+S + + G + AEN++ +
Sbjct: 2 IADNLQKIKQEIQDSCALVHRDPKEVTLVAVTKSVESAQAEELVRAGVMNCAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L +++ IG+LQ KV IV+ D + + A + + K+ L
Sbjct: 62 QKKQDLFDFPEIKWHLIGNLQRRKVKLIVNEIDYFHALDSLRLAEEIQKRLEKE---LSC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSE 179
+I+VN E K GI P++ FV ++ V GLM + P + + F L E
Sbjct: 119 FIEVNVSGEESKHGISPDELLPFVESLAACTKIKVVGLMTMAPKEASDEQIHKVFGTLKE 178
Query: 180 IARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + +LSMGM++DF++AI GAT +R+G+ +F
Sbjct: 179 LRDLVQAKGYAHAPCNELSMGMSQDFQIAIEEGATFIRVGTALF 222
>gi|262068235|ref|ZP_06027847.1| pyridoxal phosphate enzyme, YggS family [Fusobacterium
periodonticum ATCC 33693]
gi|291378103|gb|EFE85621.1| pyridoxal phosphate enzyme, YggS family [Fusobacterium
periodonticum ATCC 33693]
Length = 223
Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats.
Identities = 65/226 (28%), Positives = 110/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + I + V L+AV+K + I L GQ I ENK+Q
Sbjct: 1 MSIQTSVEEILEDI----KKYSPYPEKVKLIAVTKYSSVEDIEEFLKTGQNICGENKVQV 56
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K + K DV+ FIG+LQ NKV I+ I +V++ A ++ + + +
Sbjct: 57 VKDKIEYFKSKNTDVKWHFIGNLQKNKVKYIIDDVVAIHSVNKLSLAQEINKKAEQSGKT 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ + I++N E K G ++ K +I + LN+ G+M + P + + F
Sbjct: 117 MDILIEINVYGEESKQGYSLDELKCDIIELKNLKNLNIIGVMTMAPFTDDEKILRMVFSE 176
Query: 177 LSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L +I E LT+LSMGM+ D+++A+ G+T +R+G+ IF
Sbjct: 177 LRKIKDELNKEYFDNNLTELSMGMSNDYKIALQEGSTYIRVGTKIF 222
>gi|298346049|ref|YP_003718736.1| alanine racemase domain-containing protein [Mobiluncus curtisii
ATCC 43063]
gi|304390192|ref|ZP_07372146.1| YggS family pyridoxal phosphate enzyme [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|298236110|gb|ADI67242.1| alanine racemase domain protein [Mobiluncus curtisii ATCC 43063]
gi|304326674|gb|EFL93918.1| YggS family pyridoxal phosphate enzyme [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 248
Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats.
Identities = 78/242 (32%), Positives = 119/242 (49%), Gaps = 22/242 (9%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS +L Q++ +A A R +S+ ++ VSK +R AL+ G F ENK Q
Sbjct: 1 MSGFSQRLHDLSQRVAAAAATAGRDSESIRILPVSKTHPVADLREALAAGVSEFGENKPQ 60
Query: 60 EAKKKWIPLRKEWDV---------QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS 110
E K L D+ + IG+LQ NK IV+ ++++ K A L+
Sbjct: 61 ELATKAAELGANLDLCADRNEVSPRWVQIGNLQRNKAKLIVAYGAELQSLDSAKLAQTLN 120
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-- 168
+ + R L V I+VNT E K G+ P +T + L + +L++ GLM + +
Sbjct: 121 RLLDQAGRTLEVMIEVNTSGEDAKHGVAPEETLELARLVIDQPRLHLIGLMTVAAHIDRV 180
Query: 169 NPKPHFYLLSEIA--RE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ F + S++A RE +LSMGM+ DFELAIA+G+T VR+GS +FG R
Sbjct: 181 GERGVFEMFSQLAGLREAVLGLPGGADCRELSMGMSGDFELAIAAGSTCVRVGSALFGPR 240
Query: 219 PC 220
Sbjct: 241 DY 242
>gi|196038758|ref|ZP_03106066.1| conserved hypothetical protein TIGR00044 [Bacillus cereus
NVH0597-99]
gi|196030481|gb|EDX69080.1| conserved hypothetical protein TIGR00044 [Bacillus cereus
NVH0597-99]
Length = 224
Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 108/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQTNLTTVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + V FIGSLQ+ KV EI++ D + ++ R A + ++ +
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRA---NKKV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+IQV T E K G+ +T F+ ++ ++ V GLM + P + F L
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKEL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ +E + +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQKEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|282879843|ref|ZP_06288570.1| pyridoxal phosphate enzyme, YggS family [Prevotella timonensis CRIS
5C-B1]
gi|281306237|gb|EFA98270.1| pyridoxal phosphate enzyme, YggS family [Prevotella timonensis CRIS
5C-B1]
Length = 222
Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats.
Identities = 63/208 (30%), Positives = 98/208 (47%), Gaps = 16/208 (7%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V LVA+SK ++ I A +CGQ +F E++ QE +K L K D+Q FIG LQ+
Sbjct: 16 PAHVKLVAISKFHPAESIAEAYACGQRVFGESREQELSRKVEMLPK--DIQWHFIGHLQT 73
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV I +IE V EK + + + R + V ++++ E K G +
Sbjct: 74 NKVRLIAPYITMIEAVDSEKLLLEIEKQAARHQRVIDVLLELHIAEEATKYGFSLSDCSQ 133
Query: 145 FVI--LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK---------LTKLS 190
++ R + + GLM + + + + L S E K + S
Sbjct: 134 WLAKGQWRSLEHVRICGLMMMASNVDDEAQIREEMTLASRFFDEVKSQYFADAPYFKERS 193
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D+ +A+ G+T VR+GS IFGER
Sbjct: 194 WGMSHDYRIAVECGSTMVRVGSAIFGER 221
>gi|294628845|ref|ZP_06707405.1| YggS family pyridoxal phosphate enzyme [Streptomyces sp. e14]
gi|292832178|gb|EFF90527.1| YggS family pyridoxal phosphate enzyme [Streptomyces sp. e14]
Length = 239
Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats.
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R ++ V+L+ V+K + +R+ G AEN+ QEA
Sbjct: 8 LAGNLARVEERIATACAAAGRGREEVTLIVVTKTYPASDVRLLADLGVRQVAENRDQEAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + F+G LQ+NKV +V D +++V R + + LS E ++ R +
Sbjct: 68 PKAAE-CADLPLTWHFVGQLQTNKVRSVVGYADFVQSVDRLRLVTALSKEAVRAGREVGC 126
Query: 123 YIQVNTGYEIQ----KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPHF 174
IQV + G+ P + L + GLM + P G + F
Sbjct: 127 LIQVALDAGESARGERGGVAPGGIGELADAIASAEGLRLGGLMTVAPLTGEYAGRQQAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +++ + +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 ERLMDLSTRLRANHPAATMVSAGMSGDLEQAVAAGATHVRVGTSVLGVRP 236
>gi|91773052|ref|YP_565744.1| hypothetical protein Mbur_1062 [Methanococcoides burtonii DSM 6242]
gi|91712067|gb|ABE51994.1| pyridoxal 5'-phosphate-dependent-protein, UPF0001family
[Methanococcoides burtonii DSM 6242]
Length = 216
Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats.
Identities = 69/230 (30%), Positives = 116/230 (50%), Gaps = 24/230 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ ++ R LV V+K +D+++I ++ G I EN++QE
Sbjct: 1 MTVDENIKRIFNEL-------GRT----KLVCVTKTIDTERINESIRAGATIIGENRVQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ K + + IG+LQ+NKV + V LFDVI++V K + + ++
Sbjct: 50 FEDKCADI---LPCERHLIGNLQTNKVKKAVHLFDVIQSVDSLKLIQDIDKKAKAINKVQ 106
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM--GNPKPHFYLLS 178
V++QVN G E QK G ++ + + ++V+GLMCIPP + + +F +
Sbjct: 107 KVFLQVNIGNEPQKFGFGSDEIGQVITQIQSLKNVHVKGLMCIPPFVSPEQTRSYFKKMK 166
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E K + +LSMGM+ D+ +AI GAT VR+GS IFG R
Sbjct: 167 ALFDELKQVDQDNIDIQELSMGMSNDYRVAIEEGATMVRVGSAIFGNRKY 216
>gi|183602732|ref|ZP_02964095.1| hypothetical protein BIFLAC_00835 [Bifidobacterium animalis subsp.
lactis HN019]
gi|219683168|ref|YP_002469551.1| enzyme with a TIM-barrel fold [Bifidobacterium animalis subsp.
lactis AD011]
gi|183217970|gb|EDT88618.1| hypothetical protein BIFLAC_00835 [Bifidobacterium animalis subsp.
lactis HN019]
gi|219620818|gb|ACL28975.1| predicted enzyme with a TIM-barrel fold [Bifidobacterium animalis
subsp. lactis AD011]
Length = 285
Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats.
Identities = 67/263 (25%), Positives = 110/263 (41%), Gaps = 44/263 (16%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + A RP V L+A +K D +I A+ G + EN+ QE
Sbjct: 23 IADGVHRVMDRIAAAEERAGRPAGDVRLLAATKTRDVGEIMAAIDAGVPMIGENRPQEVV 82
Query: 63 KKW--------------------------------IPLRKEWDVQLRFIGSLQSNKVSEI 90
K L++ + IG LQSNK+S+I
Sbjct: 83 AKIDGLRYQCKQRGYVIGAYDFDLTVDADPTYAEPEDLKEAPFIPFHLIGQLQSNKISKI 142
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
+ + +E+V + A ++ + + R + V ++VN E KSG P+Q +
Sbjct: 143 LPTVNTVESVDSLELAEKIARRCMVRGRSMGVLLEVNESGEESKSGCAPDQALELAEQIA 202
Query: 151 QKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIARECK---------LTKLSMGMTRDFE 198
+ ++GLM + + + + F L + + +LSMGM+ D E
Sbjct: 203 ALGGVELQGLMTVGAHVRDERRIREGFAHLRGLRERIQSLGMPGTARCVELSMGMSGDLE 262
Query: 199 LAIASGATSVRIGSGIFGERPCQ 221
AIA GAT VR+GS IFGER +
Sbjct: 263 YAIAEGATIVRVGSAIFGERDFK 285
>gi|329769175|ref|ZP_08260595.1| YggS family pyridoxal phosphate enzyme [Gemella sanguinis M325]
gi|328839394|gb|EGF88972.1| YggS family pyridoxal phosphate enzyme [Gemella sanguinis M325]
Length = 225
Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats.
Identities = 64/230 (27%), Positives = 111/230 (48%), Gaps = 23/230 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ- 59
M + K++I + R + + ++AV+K V ++ A+ G FAEN+ Q
Sbjct: 1 MDIRENFDNIKREISEACGKVDRSPEDIKVIAVTKYVTDARVEQAIEVGVDAFAENRPQN 60
Query: 60 --EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
E K+K+ D + IGSLQ+ KV ++++ D + RE A + +
Sbjct: 61 YLERKQKYS------DKEWHLIGSLQTRKVRDVINHVDYFHALDRESLAKEIEKRAEDR- 113
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHF 174
+ ++QVN E K G+ ++T +F+ + ++NV GLM + P + + + F
Sbjct: 114 --VNCFVQVNVSGEESKHGLTSHETIEFIKGLGKYSKINVIGLMTMAPFVEDEDVLRNCF 171
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L ++ E K LSMGM+ D+++AI GAT VRIG+ + G
Sbjct: 172 KKLRQLRDEVKELNLDYAPCEYLSMGMSNDYKIAIEEGATHVRIGTSLVG 221
>gi|323140383|ref|ZP_08075313.1| pyridoxal phosphate enzyme, YggS family [Phascolarctobacterium sp.
YIT 12067]
gi|322415139|gb|EFY05928.1| pyridoxal phosphate enzyme, YggS family [Phascolarctobacterium sp.
YIT 12067]
Length = 233
Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats.
Identities = 66/233 (28%), Positives = 110/233 (47%), Gaps = 18/233 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPK----DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
L + L+ +++I ++ K D+V+LVAV+K + I + G EN++
Sbjct: 2 LADNLKQVQEQIASALDKRKNKDLLTGDNVTLVAVTKNHPPEIITNIEALGIANVGENRV 61
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QEAK K L K IG LQ+NK + V+LFD+IE+V E + + E + +
Sbjct: 62 QEAKHKQEALGKHG--YWHLIGHLQTNKARQAVALFDLIESVDSEHLLAAIDKEAERIGK 119
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP------ 172
+ +Q+N +E QKSG+ + + + + GLM I + +
Sbjct: 120 VQDILLQLNIAHEEQKSGLDKEDYLALLPKLPEYKHVRLRGLMVIAQKCEDIEQTRPVFA 179
Query: 173 ----HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L + + + LSMGM+ D+ +AI GA VR+G+ +FG+R
Sbjct: 180 AGYRAFARLKQ--QYPQADILSMGMSNDYTVAIEEGANIVRVGTALFGQRDYS 230
>gi|315654634|ref|ZP_07907540.1| K+ uptake protein [Mobiluncus curtisii ATCC 51333]
gi|315491098|gb|EFU80717.1| K+ uptake protein [Mobiluncus curtisii ATCC 51333]
Length = 247
Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats.
Identities = 77/241 (31%), Positives = 118/241 (48%), Gaps = 21/241 (8%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS +L Q++ +A A R +S+ ++ VSK +R AL+ G F ENK Q
Sbjct: 1 MSGFSQRLHDLSQRVAAAAATAGRDSESIRILPVSKTHPVTDLREALAAGVSEFGENKPQ 60
Query: 60 EAKKKWIPLRKEWDV--------QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
E K L + + IG+LQ NK IV+ ++++ K A L+
Sbjct: 61 ELATKAAELGANLGLCADGSASPRWIQIGNLQRNKAKLIVAYGAELQSLDSAKLAQTLNR 120
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG--N 169
+ + R L V I+VNT E K G+ P +T + L + +L++ GLM + +
Sbjct: 121 LLDQAGRTLEVMIEVNTSGEDAKHGVAPEETLELARLVIDQPRLHLIGLMTVAAHVDRVG 180
Query: 170 PKPHFYLLSEIA--RE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ F + S++A RE +LSMGM+ DFELAIA+G+T VR+GS +FG R
Sbjct: 181 ERGVFEMFSQLAGLREAVLGLPGGADCRELSMGMSGDFELAIAAGSTCVRVGSALFGPRD 240
Query: 220 C 220
Sbjct: 241 Y 241
>gi|294673995|ref|YP_003574611.1| hypothetical protein PRU_1297 [Prevotella ruminicola 23]
gi|294472457|gb|ADE81846.1| conserved hypothetical protein TIGR00044 [Prevotella ruminicola 23]
Length = 224
Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats.
Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 16/208 (7%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V LVA+SK ++ I A GQ +F E+ QE ++K L + D++ FIG LQ+
Sbjct: 17 PQGVRLVAISKYHPNEYIEAAYEEGQRVFGESHEQELRQKHQSLPQ--DIEWHFIGHLQT 74
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV I +IE V K ++ + K R + V ++++ E K G+ + ++
Sbjct: 75 NKVKYIAPYVTMIEAVDSLKLLREINKQAEKCGRRIKVLLELHIAEEATKYGLTLDACRE 134
Query: 145 FVI--LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK---------LTKLS 190
+ R+ + + GLM + + + + + E K + S
Sbjct: 135 LLAAGEWREMQHVQICGLMMMASFVNDEAQIRQEMQTARDFFDEVKAQYFADDDAFCERS 194
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
GM+ D+ +A+ +G+T +R+G+ IFG R
Sbjct: 195 WGMSDDYPIALQTGSTMIRVGTKIFGPR 222
>gi|329891188|ref|ZP_08269531.1| hypothetical protein BDIM_28990 [Brevundimonas diminuta ATCC 11568]
gi|328846489|gb|EGF96053.1| hypothetical protein BDIM_28990 [Brevundimonas diminuta ATCC 11568]
Length = 217
Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats.
Identities = 98/209 (46%), Positives = 132/209 (63%), Gaps = 1/209 (0%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+++I ++A+ A R SV L AVSK + AL+ GQ +F EN++QEAK W R
Sbjct: 2 RRRIHDAALAAGRDPASVVLTAVSKTQGDAALDAALATGQRVFGENRVQEAKAHWDERRA 61
Query: 71 E-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
D++LR IG LQ+NK + V LFDVIET+ RE+ A+ L+ K R V +QVNTG
Sbjct: 62 ALPDLELRLIGPLQTNKAQDAVELFDVIETLDRERLAAALAAAARKTGRRPRVLVQVNTG 121
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKL 189
E QK+G++P+ + R + L VEGLMCIPPA +P PHF LL+ IA L+ L
Sbjct: 122 AEPQKAGVLPDDADALIAAARDVHGLTVEGLMCIPPADEDPAPHFALLAAIAARNGLSVL 181
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGER 218
SMGM+ D+ AI +GAT VR+GS +FGER
Sbjct: 182 SMGMSGDYLTAIEAGATHVRVGSALFGER 210
>gi|264680539|ref|YP_003280449.1| hypothetical protein CtCNB1_4407 [Comamonas testosteroni CNB-2]
gi|262211055|gb|ACY35153.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 240
Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats.
Identities = 78/236 (33%), Positives = 109/236 (46%), Gaps = 17/236 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N L ++ + A RP SV L+AVSK + +R A+ GQ F EN +QEA
Sbjct: 3 TIENNLGQIHARMAAACASASRPVTSVQLLAVSKTFGADAVREAVLAGQRSFGENYIQEA 62
Query: 62 KKKWIPLRK-----EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+K LR +Q IG +QSNK + FD +TV R K A LS + +
Sbjct: 63 VEKIAALRAMQLAGGEALQWHCIGPIQSNKTRLVAENFDWAQTVDRLKIAERLSAQRPQG 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY- 175
L V IQVN KSG+M Q + + L + G+M IP + +
Sbjct: 123 MARLNVCIQVNVDGGATKSGVMAEQALELAEAMVKLPNLQLRGIMSIPDDAPDFEAQCAV 182
Query: 176 --LLSEIARECK---------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ K LSMGMT D E A+A+G+T VR+GSG+FG+R
Sbjct: 183 HKKAKAVFESIKASGLAGLEHFDTLSMGMTGDLEAAVAAGSTMVRVGSGVFGKRSY 238
>gi|313637029|gb|EFS02599.1| pyridoxal phosphate enzyme, YggS family [Listeria seeligeri FSL
S4-171]
Length = 229
Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats.
Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 15/225 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ L+ ++IE + + R K V+LVAV+K +D+ ++ F EN+
Sbjct: 1 MTKQANLEKVTKQIELACTESNRDKTDVTLVAVTKTIDATEMTELYDLRIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L + D+ +IGSLQ+ KV +++ D + ++ R A + K +
Sbjct: 61 FLEKTTQLANKDDICWHYIGSLQTRKVKDVLPKIDYLHSLDRASLAKEIEKRATKL---V 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-NPKPH--FYLL 177
++Q+N E K G + F+ + + GLM + P + + H F+ L
Sbjct: 118 KCFLQINISGEETKHGFSKEEALSFLQE-ADFKYIEIVGLMTMAPITNSDIELHHVFHEL 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGI 214
++ +E T+LSMGMT DF +AI GAT +R+G +
Sbjct: 177 KQLQQEIHALQLKNIPCTELSMGMTNDFGIAITEGATFIRVGRAL 221
>gi|42782993|ref|NP_980240.1| hypothetical protein BCE_3945 [Bacillus cereus ATCC 10987]
gi|42738920|gb|AAS42848.1| conserved hypothetical protein TIGR00044 [Bacillus cereus ATCC
10987]
Length = 224
Score = 232 bits (593), Expect = 3e-59, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 107/228 (46%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQTNLTTVNESIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + V FIGSLQ+ KV EI++ D + ++ R A + K+ +
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRADKK---V 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+IQV T E K G+ +T F+ ++ ++ V GLM + P + F L
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEKEIRRCFKTL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ E + +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|268638068|ref|XP_001134585.2| hypothetical protein DDB_G0278713 [Dictyostelium discoideum AX4]
gi|284018110|sp|Q1ZXI6|PROSC_DICDI RecName: Full=Proline synthase co-transcribed bacterial homolog
protein
gi|256012994|gb|EAS66901.2| hypothetical protein DDB_G0278713 [Dictyostelium discoideum AX4]
Length = 255
Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats.
Identities = 79/225 (35%), Positives = 109/225 (48%), Gaps = 26/225 (11%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
+ +V LVAVSK ++ IR+ G F EN +QE K L + +++ FIGS+Q
Sbjct: 29 DRHNVKLVAVSKTKPTEMIRILYDKGHRHFGENYIQELVSKSEELSELNEIKWHFIGSIQ 88
Query: 84 SNKVSEI--VSLFDVIETVSREKTASLLSL-----------EMIKQSRFLPVYIQVNTGY 130
SNK + V V+ETV +K L+ ++ L + IQVNT
Sbjct: 89 SNKSKILTSVKNLYVVETVENKKILDKLAKSLLNNEENNNNNNNNNNKKLNIMIQVNTSG 148
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQ----LNVEGLMCIPPAMGNP-KPHFYLL----SEIA 181
E KSG P + D V C + LN GLM I P +P F L + I+
Sbjct: 149 EESKSGCKPEECLDLVKHCLEDNNCKNSLNFLGLMTIGNPNATPDQPDFKCLVDCKNNIS 208
Query: 182 RECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ + +LSMGM+ DFE AI G+TSVR+GS IFGER
Sbjct: 209 KQLNIPLDSIELSMGMSHDFEPAIEFGSTSVRVGSAIFGERDYSN 253
>gi|239940566|ref|ZP_04692503.1| hypothetical protein SrosN15_06183 [Streptomyces roseosporus NRRL
15998]
gi|239987050|ref|ZP_04707714.1| hypothetical protein SrosN1_07062 [Streptomyces roseosporus NRRL
11379]
gi|291444001|ref|ZP_06583391.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291346948|gb|EFE73852.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 239
Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats.
Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I ++ A R ++ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAQVEERIASACAAAGRKREEVTLIVVTKTYPASDVRILHQLGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + F+G LQ+NKV + S DV+++V R K + LS ++ R L
Sbjct: 68 PKATA-CADLSLTWHFVGQLQTNKVRSVTSYADVVQSVDRAKLVTALSAAAVRGERELGC 126
Query: 123 YIQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPHF 174
IQV E ++ G+ P+ ++ L ++GLM + P G + F
Sbjct: 127 LIQVALDAESGERGERGGVAPDGVEELAAAIDSAPGLRLDGLMTVAPLAGEYAGRQRAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L EI+ + +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 DRLMEISSRLRAGHPAANMVSAGMSGDLEDAVAAGATHVRVGTAVLGVRP 236
>gi|332297936|ref|YP_004439858.1| protein of unknown function UPF0001 [Treponema brennaborense DSM
12168]
gi|332181039|gb|AEE16727.1| protein of unknown function UPF0001 [Treponema brennaborense DSM
12168]
Length = 233
Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats.
Identities = 75/229 (32%), Positives = 115/229 (50%), Gaps = 13/229 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L+ I + A R + SV LVAVSK ++ + A++ GQ +F EN++QEA
Sbjct: 3 TISSNLKQITDSIFEAEQAAGRIRGSVRLVAVSKFHPAQAVLEAIASGQTLFGENRVQEA 62
Query: 62 KKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ +R + +L IGSLQ NKV V I++V R++ + + K + +
Sbjct: 63 AAKFETVRAAYPAAELHIIGSLQRNKVKSAVQCASCIQSVDRQELLEEIQKQAEKLGKKI 122
Query: 121 PVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYL 176
V + +TG E KSG + + L G M + P + + F
Sbjct: 123 RVLFEFHTG-EDSKSGFTDADSVFRAIEFAESASCLVPAGFMTMAPFTQDSRLVSESFRK 181
Query: 177 LSEIAR-------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LS + E +LT+LSMGM+ D+ +AIA GAT VRIG+ IFGER
Sbjct: 182 LSGLRTAAQARFPELELTELSMGMSADYRIAIAEGATMVRIGTAIFGER 230
>gi|225352554|ref|ZP_03743577.1| hypothetical protein BIFPSEUDO_04178 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225156748|gb|EEG70142.1| hypothetical protein BIFPSEUDO_04178 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 274
Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats.
Identities = 66/249 (26%), Positives = 104/249 (41%), Gaps = 33/249 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I ++ A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 23 IADGVHRVLDRIASAEQHAGRDAGSVRLLAATKTRDVGEIMAAIDAGVRMIGENRPQEVM 82
Query: 63 KKWIPLRKEW---------------------DVQLRFIGSLQSNKVSEIVSLFDVIETVS 101
K L + IG LQSNK+ +++ + + IE+V
Sbjct: 83 AKAEGLMARCGERGFALGVADDAGASTIAGEHIPFHLIGQLQSNKIGKVLPVVNTIESVD 142
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161
A +S + + + V ++VN E KSG P+ L ++GLM
Sbjct: 143 SLDLAEKISRRAVARGITVGVLLEVNESGEASKSGCDPSHAIRIAQKIGTLDGLELQGLM 202
Query: 162 CIPPAMGNP---KPHFYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVR 209
I + + + F L + +LSMGMT D ELA+A G+T VR
Sbjct: 203 TIGAHVDDETAIRKGFEHLRKTRDHILESGEPGTQSCRELSMGMTGDMELAVAEGSTIVR 262
Query: 210 IGSGIFGER 218
+G+ IFGER
Sbjct: 263 VGTAIFGER 271
>gi|325690197|gb|EGD32201.1| cell division protein YlmE [Streptococcus sanguinis SK115]
Length = 223
Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats.
Identities = 61/226 (26%), Positives = 107/226 (47%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A R KDSV+++AV+K VD + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAHRLKDSVNIIAVTKYVDCETTQELARTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ E ++ IGSLQ KV ++++ D + K A + +
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDKRAE---HVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++Q+N E K G + + + + + + GLM + P + + F
Sbjct: 117 KCFLQLNISKEESKHGFLVEDLEVVLPELEKLENVQIVGLMTMAPFEASHEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E K ++LSMGM+RD+ AIA G+T VRIG+ F
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTAFF 222
>gi|330794212|ref|XP_003285174.1| hypothetical protein DICPUDRAFT_28875 [Dictyostelium purpureum]
gi|325084895|gb|EGC38313.1| hypothetical protein DICPUDRAFT_28875 [Dictyostelium purpureum]
Length = 247
Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats.
Identities = 82/240 (34%), Positives = 118/240 (49%), Gaps = 21/240 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL-Q 59
+ L + K ++E + R +V+LVAVSK + IR+ G F EN + Q
Sbjct: 7 LELIENYKNIKDRVEYVSNKFDR--RNVALVAVSKTKPVEMIRILYEKGHRHFGENYVIQ 64
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS--LFDVIETVSREKTASLLSLEM---I 114
E +K L +++ +IGS+QSNK+ + S V+ETV +++ +
Sbjct: 65 ELIQKSEELASLNEIKWHYIGSIQSNKIKHLASVKNLYVVETVEKKEVLDKFAKSWDLEK 124
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC----RQKYQLNVEGLMCIP-PAMGN 169
+ L + IQVNT E KSG PN + V C + K +LN GLM I P
Sbjct: 125 SNNTKLNIMIQVNTSQEESKSGCHPNDCLELVKYCVEDEKCKEKLNFLGLMTIGSPNATE 184
Query: 170 PKPHFYLLSE----IARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+P F L E IA+ + +LSMGM+ DFE AI G+TSVR+GS IFG+R
Sbjct: 185 DQPDFKCLVECKNNIAKNTGIPLESIQLSMGMSHDFEPAIEFGSTSVRVGSAIFGDRDYS 244
>gi|206976698|ref|ZP_03237602.1| conserved hypothetical protein TIGR00044 [Bacillus cereus H3081.97]
gi|217961321|ref|YP_002339889.1| conserved hypothetical protein TIGR00044 [Bacillus cereus AH187]
gi|222097346|ref|YP_002531403.1| hypothetical protein BCQ_3686 [Bacillus cereus Q1]
gi|206745008|gb|EDZ56411.1| conserved hypothetical protein TIGR00044 [Bacillus cereus H3081.97]
gi|217066862|gb|ACJ81112.1| conserved hypothetical protein TIGR00044 [Bacillus cereus AH187]
gi|221241404|gb|ACM14114.1| conserved hypothetical protein [Bacillus cereus Q1]
Length = 224
Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 107/228 (46%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQTNLTTVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + V FIGSLQ+ KV EI++ D + ++ R A + K+ +
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRADKK---V 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+IQV T E K G+ +T F+ ++ ++ V GLM + P + F L
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKTL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ E + +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|16332078|ref|NP_442806.1| hypothetical protein slr0556 [Synechocystis sp. PCC 6803]
gi|1723173|sp|P52056|Y556_SYNY3 RecName: Full=UPF0001 protein slr0556
gi|1001387|dbj|BAA10877.1| slr0556 [Synechocystis sp. PCC 6803]
Length = 218
Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats.
Identities = 68/203 (33%), Positives = 97/203 (47%), Gaps = 9/203 (4%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
SV LVAV+K I A G FAE+++QEA K L D+ FIG LQS
Sbjct: 15 PPSVRLVAVTKTKAIADIEAAYGAGIRDFAESRIQEALPKIEALANYQDINWHFIGRLQS 74
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK ++V F I +V A L + ++F +Q+ + KSG + K
Sbjct: 75 NKARKVVENFTYIHSVDNLAIAVKLDRIAEELNKFPQGLLQIKLLPDENKSGWTREELKL 134
Query: 145 FVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLSEIARECK------LTKLSMGMTR 195
+ L + GLM I P G+ + F L +A LT+LSMGM+
Sbjct: 135 DLPQLELLKNLKICGLMTILPLGLSPGDRQLTFGELKNLATAINQQSSLSLTELSMGMSG 194
Query: 196 DFELAIASGATSVRIGSGIFGER 218
D+ AIA+GAT +R+G+ +FG+R
Sbjct: 195 DYPEAIAAGATMIRLGTILFGDR 217
>gi|311272383|ref|XP_003133416.1| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like isoform 1 [Sus scrofa]
Length = 234
Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats.
Identities = 70/210 (33%), Positives = 100/210 (47%), Gaps = 20/210 (9%)
Query: 32 AVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVS 88
A SK + + A + GQ IF EN +QE +K L +++ FIG LQ V+
Sbjct: 3 ACSKTKPADMVIEAYNHGQRIFGENYVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVN 62
Query: 89 EI--VSLFDVIETVSREKTASLLSLEMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKD 144
++ V ++ETV K A ++ K+ L V +QVNT E K G++P++T
Sbjct: 63 KLMAVPNLFMLETVDSMKLADKVNSSWQKKGSPERLKVMVQVNTSGEESKHGLLPSETVA 122
Query: 145 FVILCRQ-KYQLNVEGLMCIPPAMGN----PKPHFYLLSEIAREC--------KLTKLSM 191
V + L GLM I + P P F +L + E +LSM
Sbjct: 123 MVEHVKAKCPSLEFVGLMTIGSFGHDLSQGPNPDFQVLVSLREELCQKLHIPVDQVELSM 182
Query: 192 GMTRDFELAIASGATSVRIGSGIFGERPCQ 221
GM+ DF+ AI G+T+VRIGS IFGER
Sbjct: 183 GMSVDFQHAIEVGSTNVRIGSTIFGERDYS 212
>gi|67479513|ref|XP_655138.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56472254|gb|EAL49752.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
Length = 229
Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats.
Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 11/218 (5%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQEAKKKWIPLRK-E 71
I LA + + V L+AVSK + I+ + +F EN +QE +K L +
Sbjct: 10 IGKINHLASQREKPVCLIAVSKTKPKEAIQHLYNVYNHRVFGENYIQELHEKATELEEVC 69
Query: 72 WDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
D++ FIG LQSNK+ +V ++TV + A L+ I ++ + V +Q+N+
Sbjct: 70 PDIEWHFIGRLQSNKLKLLVSTPHLKCVQTVHSIEIAEKLNKACINANKTIDVMVQINSS 129
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR------E 183
E QK G+ + V + L+ G+M I +G+ K +F + ++A
Sbjct: 130 GEEQKGGVSVEEAISVVKEVMKCSNLHFIGIMTIG-MVGDSKKNFTTMKQLADTICSQEH 188
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++SMGM+ D+E AI GAT VR+G+ +FG R
Sbjct: 189 LGSIEISMGMSSDYEQAIELGATMVRVGTALFGARDYS 226
>gi|241191502|ref|YP_002968896.1| hypothetical protein Balac_1487 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|241196907|ref|YP_002970462.1| hypothetical protein Balat_1487 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|240249894|gb|ACS46834.1| hypothetical protein Balac_1487 [Bifidobacterium animalis subsp.
lactis Bl-04]
gi|240251461|gb|ACS48400.1| hypothetical protein Balat_1487 [Bifidobacterium animalis subsp.
lactis DSM 10140]
gi|295794494|gb|ADG34029.1| hypothetical protein BalV_1441 [Bifidobacterium animalis subsp.
lactis V9]
Length = 281
Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats.
Identities = 67/263 (25%), Positives = 110/263 (41%), Gaps = 44/263 (16%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + A RP V L+A +K D +I A+ G + EN+ QE
Sbjct: 19 IADGVHRVMDRIAAAEERAGRPAGDVRLLAATKTRDVGEIMAAIDAGVPMIGENRPQEVV 78
Query: 63 KKW--------------------------------IPLRKEWDVQLRFIGSLQSNKVSEI 90
K L++ + IG LQSNK+S+I
Sbjct: 79 AKIDGLRYQCKQRGYVIGAYDFDLTVDADPTYAEPEDLKEAPFIPFHLIGQLQSNKISKI 138
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
+ + +E+V + A ++ + + R + V ++VN E KSG P+Q +
Sbjct: 139 LPTVNTVESVDSLELAEKIARRCMVRGRSMGVLLEVNESGEESKSGCAPDQALELAEQIA 198
Query: 151 QKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIARECK---------LTKLSMGMTRDFE 198
+ ++GLM + + + + F L + + +LSMGM+ D E
Sbjct: 199 ALGGVELQGLMTVGAHVRDERRIREGFAHLRGLRERIQSLGMPGTARCVELSMGMSGDLE 258
Query: 199 LAIASGATSVRIGSGIFGERPCQ 221
AIA GAT VR+GS IFGER +
Sbjct: 259 YAIAEGATIVRVGSAIFGERDFK 281
>gi|309790060|ref|ZP_07684634.1| alanine racemase domain protein [Oscillochloris trichoides DG6]
gi|308227915|gb|EFO81569.1| alanine racemase domain protein [Oscillochloris trichoides DG6]
Length = 246
Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats.
Identities = 78/238 (32%), Positives = 112/238 (47%), Gaps = 21/238 (8%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ +L+ +I +A A R ++LVAVSK +R A++ G F EN++QEA
Sbjct: 9 NIALRLEQIHARITAAAHRAARHPADITLVAVSKTHSPDHVRAAVAAGCYTFGENRVQEA 68
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L+ + IG LQ NK V LFD+I++V + A L+ R +
Sbjct: 69 APKIAALQDLPRRPRWHMIGHLQRNKARLAVELFDLIQSVDSLRLAESLNQHAHDLGRRV 128
Query: 121 PVYIQVNTGYEIQKSGIMP----------NQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
P+ +QVN E+ K G Q + L V GLM IPP P
Sbjct: 129 PILLQVNVSGEVSKEGFALPGGIANHAAYAQLSTEIERILTLPNLEVRGLMTIPPLAEEP 188
Query: 171 ---KPHFYLLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+P+F LL E+ + LSMGM+ DFE+AI+ AT +R+G IFGER
Sbjct: 189 EASRPYFRLLRELRTDLARRWPQANWRDLSMGMSDDFEVAISEEATIIRLGRAIFGER 246
>gi|308177570|ref|YP_003916976.1| pyridoxal phosphate-dependent enzyme [Arthrobacter arilaitensis
Re117]
gi|307745033|emb|CBT76005.1| putative pyridoxal phosphate-dependent enzyme [Arthrobacter
arilaitensis Re117]
Length = 253
Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats.
Identities = 78/224 (34%), Positives = 114/224 (50%), Gaps = 9/224 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L + +I + A R SV L+ V+K V ++++R+A+ G ENK+QEA +
Sbjct: 17 AANLASVRARIAAAETAAGRRAGSVRLLPVTKTVPAQRLRLAIEAGVSWLGENKVQEAWE 76
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K L ++ IG LQ+NK + D + + + A L + + R LPV+
Sbjct: 77 KSQQLADVPQLKYSVIGHLQTNKAKYVARFADEFQALDNLRQAQALERRLEVEDRILPVF 136
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI 180
IQVNT E K GI P Q F+ + +L V+GLM + P + F L +
Sbjct: 137 IQVNTSGEESKFGIQPAQAAGFLKQLQVFERLQVKGLMTLAVFSPEQELVRACFRKLVAV 196
Query: 181 ARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+E + + +LSMGM+ DFELAIA GAT VR+G GIFG R
Sbjct: 197 RQELRELDLGNVEELSMGMSGDFELAIAEGATVVRVGQGIFGAR 240
>gi|242059919|ref|XP_002459105.1| hypothetical protein SORBIDRAFT_03g045890 [Sorghum bicolor]
gi|241931080|gb|EES04225.1| hypothetical protein SORBIDRAFT_03g045890 [Sorghum bicolor]
Length = 248
Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats.
Identities = 72/202 (35%), Positives = 94/202 (46%), Gaps = 16/202 (7%)
Query: 35 KMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI---V 91
K ++ G F EN +QE K L + DV+ FIG LQSNKV + V
Sbjct: 45 KTKPVSMLQQLYDAGHRCFGENYVQEFVTKAPQLPE--DVRWHFIGHLQSNKVKPLLAAV 102
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSR-FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
D++E V EK A+ L + R L V +QVNT E KSGI P++ D +
Sbjct: 103 PNLDMVEGVDNEKIANHLDRAVNSLGREPLKVLVQVNTSGEESKSGIDPSKCVDLAKHVK 162
Query: 151 -QKYQLNVEGLMCIPPAMGNPKPH-FYLLS----EIARECKLT----KLSMGMTRDFELA 200
L GLM I + P F L E+ + + +LSMGM+ DFE A
Sbjct: 163 LACPHLIFSGLMTIGMKDYSSTPENFKALVNCKLEVCKALDIPTEQFELSMGMSGDFEQA 222
Query: 201 IASGATSVRIGSGIFGERPCQT 222
I G+T+VRIGS IFG R
Sbjct: 223 IEMGSTNVRIGSTIFGPREYPN 244
>gi|33865194|ref|NP_896753.1| hypothetical protein SYNW0660 [Synechococcus sp. WH 8102]
gi|33638878|emb|CAE07175.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 220
Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats.
Identities = 64/198 (32%), Positives = 98/198 (49%), Gaps = 4/198 (2%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ L+AVSK + IR GQ F E++LQEA K L +Q FIG LQS
Sbjct: 17 PATAQLLAVSKGHPAAVIRELAGSGQRAFGESRLQEALPKQEQLAD-LALQWHFIGRLQS 75
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV +V F VI +V A +S ++ ++ V +QV + K G + ++
Sbjct: 76 NKVRSVVRAFPVIHSVDSLPLAQRVSRIAGEEEQWPEVLLQVKLRPDTNKGGFLRDELLS 135
Query: 145 FVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI 201
+ V GLM + P + + F E+A + +L + SMGM+ D++ A
Sbjct: 136 AWTELAALPSMTVIGLMTMAPMGCDADDRRALFQECRELADQLELRECSMGMSGDWQDAA 195
Query: 202 ASGATSVRIGSGIFGERP 219
A+G+T +R+GS +FG RP
Sbjct: 196 AAGSTWLRLGSVLFGPRP 213
>gi|319401518|gb|EFV89728.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus epidermidis
FRI909]
Length = 222
Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L + +I+ S + ++AV+K V ++ R A G F EN+L
Sbjct: 1 MDVKENLAKIETEIDASVKKSA-HSAQPHVIAVTKYVTIERAREAYKAGIRHFGENRLDG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KKK L D++L FIGSLQS KV +I++ D + R A ++ + +
Sbjct: 60 FKKKKESLPS--DIKLHFIGSLQSRKVKDIINEVDYFHALDRLSLAKEINKRA---NHVI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
++QVN E K GI + F+ ++ + + GLM + P + K F L
Sbjct: 115 KCFLQVNVSGEESKHGIALEEVNQFINQIKEYENIQIIGLMTMAPLTDDLSYIKNLFKEL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E + T+LSMGM+ D+++A+ GAT VRIG+ + GE
Sbjct: 175 RHKRNEIQQFNLAHAPCTELSMGMSNDYQMAVEEGATFVRIGTKLVGE 222
>gi|313112741|ref|ZP_07798389.1| pyridoxal phosphate enzyme, YggS family [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310624940|gb|EFQ08247.1| pyridoxal phosphate enzyme, YggS family [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 240
Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats.
Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 12/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + ++K+ +A A R +V L A K ++ + + + +F EN +QE
Sbjct: 9 MQEAVAEIREKMAAAAREAGRDPAAVQLCAACKTRTAQTVAASAALPIDVFGENHVQELC 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ FIG LQ+NK+ +++ +I++V E + + E K V
Sbjct: 69 ANFDA-GAYCGKPSHFIGHLQTNKIKKVLGRASLIQSVDSEHLLNAIEKEAAKAGIVQNV 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN G E K+G+ P + + + V+GLM IPP + + L+E+ +
Sbjct: 128 LLEVNIGGEESKTGVAPEALWPLLDAAAAQEHIRVKGLMAIPPVNDDDARNRRYLAEVYK 187
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGM+ DFE AI GAT VRIG+ I+GER
Sbjct: 188 LFVQAGERGYSNVSMETLSMGMSGDFENAIREGATLVRIGTAIYGERDYS 237
>gi|325688222|gb|EGD30241.1| cell division protein YlmE [Streptococcus sanguinis SK72]
Length = 223
Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats.
Identities = 61/224 (27%), Positives = 109/224 (48%), Gaps = 15/224 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L N ++ Q + +A A+R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MNLQNNKELVFQSVAQAAEQAQRLKDSVNIIAVTKYVDCETTQELVRTGIQHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ E ++ IGSLQ KV ++++ D + K A + +
Sbjct: 61 FLDKYHALKDE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAKEIDKRAE---HVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G + + + + + + + GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFLIEELEVVLPELEKLENVQIVGLMTMAPFEASHEELNQIFEKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSG 213
++ +E K ++LSMGM+RD+ AIA G+T VRIG+
Sbjct: 177 HQLQKELKKKQLNNMPFSELSMGMSRDYPEAIAHGSTYVRIGTA 220
>gi|47570315|ref|ZP_00240962.1| conserved hypothetical protein protein TIGR00044 [Bacillus cereus
G9241]
gi|47553024|gb|EAL11428.1| conserved hypothetical protein protein TIGR00044 [Bacillus cereus
G9241]
Length = 224
Score = 231 bits (591), Expect = 4e-59, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQKNLTTVNESIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + V FIGSLQ+ KV EI++ D + ++ R A + K+ +
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRADKK---V 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ +T F+ ++ ++ V GLM + P + E+
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKEL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E +L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQAEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|312864654|ref|ZP_07724885.1| pyridoxal phosphate enzyme, YggS family [Streptococcus downei
F0415]
gi|311099781|gb|EFQ57994.1| pyridoxal phosphate enzyme, YggS family [Streptococcus downei
F0415]
Length = 225
Score = 231 bits (591), Expect = 5e-59, Method: Composition-based stats.
Identities = 65/228 (28%), Positives = 104/228 (45%), Gaps = 15/228 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +++ +A A R +S+VAV+K VDS + G EN++ +
Sbjct: 2 MDLRKNKDFVYEQVAQAASQAGRQVSDISIVAVTKYVDSHIAEQLVDLGVKHIGENRVDK 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ + DV IGSLQ KV +I++ D + K A+ + +
Sbjct: 62 FLDKYQALKGK-DVTWHLIGSLQRRKVKDIINYVDYFHALDSVKLAAEIQKRA---DHTI 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G P Q + + +L + GLM + P + + F
Sbjct: 118 KCFLQVNVSGEESKHGFAPEQVNEALEELASFDKLEIVGLMTMAPIDADEQELDEIFRQT 177
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ + +E K LSMGM+RDF +AI++G+T VRIG+ F E
Sbjct: 178 NALRQELKERKIKNMPFDDLSMGMSRDFPIAISNGSTFVRIGTSFFKE 225
>gi|37520271|ref|NP_923648.1| hypothetical protein glr0702 [Gloeobacter violaceus PCC 7421]
gi|35211264|dbj|BAC88643.1| glr0702 [Gloeobacter violaceus PCC 7421]
Length = 232
Score = 231 bits (591), Expect = 5e-59, Method: Composition-based stats.
Identities = 67/233 (28%), Positives = 106/233 (45%), Gaps = 25/233 (10%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +++ + + +V LVAV+K V ++IR A CG F E+++QE
Sbjct: 1 MGVAERIEWLR----------GQLPAAVRLVAVTKQVPVERIREAYDCGLRDFGESRIQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K L V IGSLQ NK + +FD I +V A L+ M R
Sbjct: 51 VQQKIPQLTDLQGVSWHLIGSLQRNKARPALEVFDWIHSVDSLPLAERLASLMDSVGRRP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+ +QV + KSG + + + QL++ GL I P + F +
Sbjct: 111 RLLLQVKLAADPTKSGWSQAELEAALPRLAALPQLDIRGLTAIAPLGLGEQGNRTLFGQV 170
Query: 178 SEIARECK------------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ +AR+ + +LSMGM+ D+ AIA+GAT VR+G +FG R
Sbjct: 171 AALARDLGRRAGEAGWQHIRMEELSMGMSGDYPQAIAAGATMVRLGQVLFGSR 223
>gi|57866695|ref|YP_188336.1| hypothetical protein SERP0753 [Staphylococcus epidermidis RP62A]
gi|57637353|gb|AAW54141.1| conserved hypothetical protein TIGR00044 [Staphylococcus
epidermidis RP62A]
Length = 222
Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats.
Identities = 66/228 (28%), Positives = 107/228 (46%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L + +I+ S + ++AV+K V ++ R A G F EN+L
Sbjct: 1 MDVKENLAKIETEIDASVKKSA-HSAQPHVIAVTKYVTIERAREAYKAGIRHFGENRLDG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+K L D++L FIGSLQS KV +I++ D + R A ++ + +
Sbjct: 60 FKEKKESLPS--DIKLHFIGSLQSRKVKDIINEVDYFHALDRLSLAKEINKRA---NHVI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
++QVN E K GI + F+ ++ + + GLM + P + K F L
Sbjct: 115 KCFLQVNVSGEKSKHGIALEEVNQFINQIKEYENIQIIGLMTMAPLTDDLSYIKNLFKEL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E + T+LSMGM+ D+++A+ GAT VRIG+ + GE
Sbjct: 175 RHKRNEIQQFNLAHAPCTELSMGMSNDYQMAVEEGATFVRIGTKLVGE 222
>gi|332022075|gb|EGI62400.1| Proline synthetase co-transcribed bacterial-like protein protein
[Acromyrmex echinatior]
Length = 252
Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats.
Identities = 82/246 (33%), Positives = 115/246 (46%), Gaps = 27/246 (10%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
+ L+ KI +A R + LVAVSK+ + I A GQ F EN
Sbjct: 3 EVAANLKSVCDKISYAATK--RTSEYQYYEPRLVAVSKLQSTVSIVSAYEAGQRNFGENY 60
Query: 58 LQEAKKKW-IPL--RKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLE 112
+ E +K PL K +Q FIG LQ NKV+++ + +IETV ++ A+ L+
Sbjct: 61 INELVEKAFSPLIREKCKQIQWHFIGHLQRNKVNKVLSIPNLYIIETVDSDRLANALNNS 120
Query: 113 MI---KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMG 168
K + L V +QVNT E +K+G Q V + LN GLM I
Sbjct: 121 WPRFRKNNDKLNVMVQVNTSQEKEKNGCDIAQLSTLVKHVVENCFNLNFMGLMTIGMYGY 180
Query: 169 N----PKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ P P F L +I E + +LSMGM+ D+E AI G+T+VR+GS IFG
Sbjct: 181 DIKDGPNPDFICLIKCREKIHDELGIDIKDIELSMGMSSDYEHAIELGSTNVRVGSVIFG 240
Query: 217 ERPCQT 222
RP +
Sbjct: 241 IRPQKN 246
>gi|289551029|ref|YP_003471933.1| hypothetical protein SLGD_01715 [Staphylococcus lugdunensis
HKU09-01]
gi|289180561|gb|ADC87806.1| protein of unknown function [Staphylococcus lugdunensis HKU09-01]
Length = 222
Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats.
Identities = 61/228 (26%), Positives = 109/228 (47%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L +Q+IE+ + ++++AV+K V ++ + A G F EN+L+
Sbjct: 1 MDVKSNLAHIQQEIESHKKKSTIDSH-INVIAVTKYVTIERAKEAYDAGLRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L + D + FIGSLQS KV ++++ D + R A ++ + +
Sbjct: 60 FLEKKAALPE--DAVMHFIGSLQSRKVKDVINEVDYFHALDRMSLAKEINKRA---NHTI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K GI N+ F+ + + + GLM + P + + F L
Sbjct: 115 SCFLQVNVSGEASKHGIHLNEVDKFIDDIKAYENIKIVGLMTMAPFTDDTQYIQELFKKL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ + T+LSMGM+ D+ +A+ GAT +RIG+ + GE
Sbjct: 175 RLKRDDIQQRQLTYAPCTELSMGMSNDYPVAVEEGATYIRIGTKLVGE 222
>gi|84622958|ref|YP_450330.1| hypothetical protein XOO_1301 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188577983|ref|YP_001914912.1| hypothetical protein PXO_01992 [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|84366898|dbj|BAE68056.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188522435|gb|ACD60380.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 230
Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats.
Identities = 75/223 (33%), Positives = 101/223 (45%), Gaps = 11/223 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ LQ I +A L R V L+A SK ++ + + GQ F EN +QEA
Sbjct: 3 ASSLQQILDAIHAAATLHART--DVRLLAASKTKPAEAVAALAAQGQRAFGENYVQEADA 60
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K LR ++ IG LQSNK FD ++TV R K LL+ L V
Sbjct: 61 KIAQLRA-LGLEWHLIGHLQSNKAELASQCFDWVQTVDRAKLIPLLARHRPDDCAPLNVL 119
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPK--PHFYLLSEI 180
IQVN E K G P + +L + GLM IP P + F + +
Sbjct: 120 IQVNIDDEDSKHGCAPEAIDSLAAAIALQPRLQLRGLMAIPAPFPDQARRGAAFTRMQVL 179
Query: 181 ARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ K + LSMGM+ DF AIA+GAT VR+G+ +FG R
Sbjct: 180 FEQLKTRYRQVDTLSMGMSSDFAEAIAAGATMVRMGTALFGAR 222
>gi|213585554|ref|ZP_03367380.1| hypothetical protein SentesTyph_31522 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 189
Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats.
Identities = 56/182 (30%), Positives = 82/182 (45%), Gaps = 2/182 (1%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP + F + +
Sbjct: 123 LNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPAPESDYVRQFEVARQ 182
Query: 180 IA 181
+A
Sbjct: 183 MA 184
>gi|206970984|ref|ZP_03231935.1| conserved hypothetical protein TIGR00044 [Bacillus cereus AH1134]
gi|206733756|gb|EDZ50927.1| conserved hypothetical protein TIGR00044 [Bacillus cereus AH1134]
Length = 224
Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 109/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQENLVIVNEAIKESCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + V FIGSLQ+ KV EI++ D + ++ R A + K+ +
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRADKK---V 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ + F+ ++ ++ V GLM + P + E+
Sbjct: 116 KCFIQVKTSSEESKQGLAIEEVVSFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKEL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E +L +LSMGM+ D+++AI GAT +R+G+ + G+
Sbjct: 176 RMLQTEVQELELLHAPCKELSMGMSNDYKIAIEEGATYIRLGTILVGK 223
>gi|284048328|ref|YP_003398667.1| alanine racemase domain protein [Acidaminococcus fermentans DSM
20731]
gi|283952549|gb|ADB47352.1| alanine racemase domain protein [Acidaminococcus fermentans DSM
20731]
Length = 234
Score = 231 bits (590), Expect = 5e-59, Method: Composition-based stats.
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 19/234 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPK-----DSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
L +K+ + KI+ + LA R + D V+++AV+K + + L+ G EN+
Sbjct: 2 LQDKIAAVEAKIQEA--LANRKEPKATGDKVTILAVTKNHPADIVTETLAAGLTEIGENR 59
Query: 58 LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+QEA K L + IG LQ+NK V F +IE+V K + L +
Sbjct: 60 VQEAMHKQAVLPPGGN--WHLIGHLQTNKARHAVEHFALIESVDSLKLMAHLEKAAAELD 117
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP----- 172
+ V +Q+N E+QKSG P + V + + V G+M I A + +
Sbjct: 118 KVQDVLLQINEAGEVQKSGFAPEDFRAAVPELKNYPHIRVRGVMVIAQATDHVEETRPVF 177
Query: 173 -----HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L + + + LSMGMT D+ +A+ GA VR+GS +FG R
Sbjct: 178 AAGYRDFLFLRDALPDIPVDILSMGMTHDYWIAVEEGANEVRVGSALFGARDYS 231
>gi|324521624|gb|ADY47891.1| Proline synthase co-transcribed bacterial protein [Ascaris suum]
Length = 277
Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats.
Identities = 74/240 (30%), Positives = 111/240 (46%), Gaps = 26/240 (10%)
Query: 2 SLGNKLQVFKQKIENSAILA-------KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFA 54
++ L+V +++ + A R LVAVSK ++ GQ F
Sbjct: 37 TVATNLRVVLNRLKEVSEKAQGTSRWCGRIP---MLVAVSKTKHPDLVKRCYDEGQRKFG 93
Query: 55 ENKLQEAKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSL 111
EN +QE ++K L ++ FIG +QSNK++++ +ET+S EK ++L
Sbjct: 94 ENYVQELQEKAAALANDCPHIEWHFIGQIQSNKIAKLAAIQNLHCVETLSSEKHCTMLDK 153
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAM--- 167
EM K+ R + VY+Q NT E QK G P + R Q L G M I
Sbjct: 154 EMAKRGRRINVYVQTNTSNEPQKGGATPESALNVAQFIREQCPSLRFAGFMTIGSFEQSS 213
Query: 168 -GNPKPHFYLL----SEIARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
P F +L + +++ LSMGM+ DFE A+ G+TSVR+G+ IFG R
Sbjct: 214 SQQPNADFDVLFDVRKKFCERTGVSEGDYDLSMGMSHDFETAVLQGSTSVRVGTTIFGSR 273
>gi|145595724|ref|YP_001160021.1| alanine racemase domain-containing protein [Salinispora tropica
CNB-440]
gi|145305061|gb|ABP55643.1| alanine racemase domain protein [Salinispora tropica CNB-440]
Length = 248
Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats.
Identities = 64/231 (27%), Positives = 100/231 (43%), Gaps = 13/231 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I ++ A R V+++AV+K + + + G EN+ QEA
Sbjct: 16 LAAGLARVRTRIADACAAAGRDPGEVTMIAVTKTYPASDVVALIGLGATEVGENRDQEAA 75
Query: 63 KKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM-IKQSRFL 120
K + + FIG LQ NK +V DV+ +V + A L ++ R L
Sbjct: 76 AKAAEVAAAGVTPRWHFIGQLQRNKAKSVVRYADVVHSVDSVRLARALDRAAGAERDRPL 135
Query: 121 PVYIQVNTGYEIQKSGIMP------NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
V +QV+ + + G +P + L + GLM + P P F
Sbjct: 136 DVLLQVSIDGAVGRGGALPGSADPDAGLDPLAEVVAGVDGLRLTGLMAVAPLGWEPDRAF 195
Query: 175 YLLSEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+E+A + + T LS GM+ D E A+ GAT VR+GS + G RP
Sbjct: 196 ARLAEVAAGFRVQHPQATLLSAGMSGDLEPAVRYGATHVRVGSALLGMRPT 246
>gi|325845144|ref|ZP_08168453.1| pyridoxal phosphate enzyme, YggS family [Turicibacter sp. HGF1]
gi|325488809|gb|EGC91209.1| pyridoxal phosphate enzyme, YggS family [Turicibacter sp. HGF1]
Length = 216
Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats.
Identities = 62/223 (27%), Positives = 110/223 (49%), Gaps = 17/223 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +Q I+ +R ++ V +VA +K V+ ++++ CG I EN++
Sbjct: 1 MNIEKNVEQVQQDIQA----CQRDREKVRIVAATKYVNVEQMKRLYDCGITIMGENRVDA 56
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L ++ FIG+LQS KV E+++ DV+ ++ R A + K L
Sbjct: 57 LLEKKAQL--HLPIEWHFIGTLQSRKVKEVINEIDVLHSLDRLSLAKEIEKYRDK---PL 111
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
IQVN E K G+ ++ F+ ++ V GLM + P N + F L
Sbjct: 112 KCLIQVNISGEKTKHGLAKDEVVTFIEQLNSFSKIEVIGLMTMAPNTENELTLRRCFSEL 171
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + + +LSMGM+ D+ +A+ GAT VR+GS +F
Sbjct: 172 KQLQLDLEKNYKSCQELSMGMSNDYLIAVEEGATYVRLGSILF 214
>gi|256084107|ref|XP_002578274.1| proline synthetase associated protein [Schistosoma mansoni]
gi|238663640|emb|CAZ34512.1| proline synthetase associated protein, putative [Schistosoma
mansoni]
Length = 237
Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats.
Identities = 74/233 (31%), Positives = 109/233 (46%), Gaps = 19/233 (8%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +++E + + + LVAVSK + I A + GQ F ENK+ K
Sbjct: 4 NLPHILRQVEEACKASPYNQKFCRLVAVSKEKPIQSIIEAYNFGQRHFGENKIVHLYDKS 63
Query: 66 ---IPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMI-KQSRF 119
+ D++ FIG +QSNK+ ++ V+ ++ETV A +L+
Sbjct: 64 YAPELINSCPDIKWHFIGRIQSNKIRKLAGVNNLYMVETVDSMDHAEILNSTWGLNHQIP 123
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN----PKPHF 174
L + IQVNT E QK+GI P + + + L V GLMCI + P P F
Sbjct: 124 LNIMIQVNTSGEPQKNGIKPTEVINLYNQIEVKCPNLKVVGLMCIGQEGVDINSGPNPDF 183
Query: 175 YLLSEIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L + + +LSMGM+ DFE AI G+T+VRIG+ IFG+R
Sbjct: 184 VKLVQCRELLASSLGKSPLDFELSMGMSHDFEQAIRLGSTNVRIGTAIFGQRD 236
>gi|182412322|ref|YP_001817388.1| alanine racemase domain-containing protein [Opitutus terrae PB90-1]
gi|177839536|gb|ACB73788.1| alanine racemase domain protein [Opitutus terrae PB90-1]
Length = 235
Score = 231 bits (590), Expect = 6e-59, Method: Composition-based stats.
Identities = 71/222 (31%), Positives = 100/222 (45%), Gaps = 11/222 (4%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67
+ I + I A R V L+ V+K + G EN++QEA +K
Sbjct: 13 DAISKAIVEACIEAGRRPGEVQLLPVTKTQPAAAADYVARYGLPAVGENRVQEAIEKRAQ 72
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
+ V+ IG LQSNK FD I++V R K L + + LPV +QVN
Sbjct: 73 TQA--SVRWELIGHLQSNKARIAAQQFDRIQSVDRAKLLDPLDRAAAELGKTLPVLLQVN 130
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAREC 184
G + K G + + L VEGLM I P +P + F L + E
Sbjct: 131 AGRDPAKFGAELEDAPQLLEQALGRPHLRVEGLMTIAPLSSDPEVARRTFAALRTLRDEL 190
Query: 185 K------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L++LSMGMT DF +AIA G+T+VR+G+ +FG R
Sbjct: 191 AARFGVPLSELSMGMTSDFRVAIAEGSTTVRVGTALFGARAA 232
>gi|268531132|ref|XP_002630692.1| Hypothetical protein CBG02374 [Caenorhabditis briggsae]
gi|187037468|emb|CAP24134.1| hypothetical protein CBG_02374 [Caenorhabditis briggsae AF16]
Length = 550
Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats.
Identities = 77/236 (32%), Positives = 109/236 (46%), Gaps = 19/236 (8%)
Query: 1 MSL---GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
MSL L + + ++ ++ LVAVSK ++ I S GQ F EN
Sbjct: 1 MSLEIVQRNLLNILEAVADAVTISS-ATKRCRLVAVSKTKSAEMIESCFSQGQRHFGENY 59
Query: 58 LQEAKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMI 114
+QE ++K L K +++ FIG +QSNK+S+I + +ETV EK A L E
Sbjct: 60 VQELEEKSAALASKCAEIRWHFIGQVQSNKISKICNSSGIWCVETVESEKHARLFDKEWS 119
Query: 115 KQSR---FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNP 170
K L V +QVNT E K GI ++ R + L +G M I
Sbjct: 120 KHGASSSPLRVLVQVNTSEEENKGGIKISEAPKLAEFIRKECLNLKFDGFMTIGSHASGV 179
Query: 171 KPHFYLLSEIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P F L + + + +LSMGM+ DF AI G+TSVR+GS +FG R
Sbjct: 180 NPDFEKLYTVRQAWSEITGETPESVELSMGMSDDFLQAIQQGSTSVRVGSKLFGAR 235
>gi|302335875|ref|YP_003801082.1| alanine racemase domain protein [Olsenella uli DSM 7084]
gi|301319715|gb|ADK68202.1| alanine racemase domain protein [Olsenella uli DSM 7084]
Length = 243
Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 103/226 (45%), Gaps = 11/226 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + +++ + + + R D V L+ VSK V ++ +A G F EN+ QE K
Sbjct: 13 LRGRRAEILERLAAACVRSGRRADDVLLLGVSKTVGIDEVALAWEAGYRAFGENRPQELK 72
Query: 63 KKWIPL---RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K K DV+ IG+LQ+NKV+ ++ +I +VS A +S + +
Sbjct: 73 RKLSACATSPKLADVRFDMIGNLQTNKVNMVIGNVSLIHSVSSTHLAEAISKRSVARGIR 132
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM--GNPKPHFYLL 177
V ++VN E KSG P+ + ++V GLM + P + F L
Sbjct: 133 SRVLLEVNVSGEESKSGFTPDGATTALDALLSLPGIDVRGLMTMAPRDDPDAARRTFSGL 192
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E+ + L LS GM+ DFE A+ G+T VR+G +F
Sbjct: 193 RELRDALRGSHGLPLDVLSCGMSDDFESAVEEGSTLVRLGRTVFDP 238
>gi|289676356|ref|ZP_06497246.1| hypothetical protein PsyrpsF_23972 [Pseudomonas syringae pv.
syringae FF5]
Length = 186
Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats.
Identities = 67/184 (36%), Positives = 86/184 (46%), Gaps = 6/184 (3%)
Query: 42 IRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVS 101
+R A + G F EN LQEA K + L + FIG +QSNK I FD + +V
Sbjct: 1 MREAYTAGLRDFGENYLQEALGKQLELSDLP-LCWHFIGPIQSNKTRAIAENFDWVHSVD 59
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161
R K A LS + + L + IQVN E KSG P +L + GLM
Sbjct: 60 RLKIAQRLSEQRPEALEPLNICIQVNVSGEASKSGCTPQDLPALAAAIIALPRLRLRGLM 119
Query: 162 CIPPAMGNPKPH---FYLLSEIARECK--LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
IP +P F + + + L LSMGM+ D E AIA GAT VRIG+ +FG
Sbjct: 120 AIPEPTDDPAAQDASFAAVRTLQEQLNLPLDTLSMGMSHDLEAAIAQGATWVRIGTALFG 179
Query: 217 ERPC 220
R
Sbjct: 180 ARDY 183
>gi|169629098|ref|YP_001702747.1| hypothetical protein MAB_2011 [Mycobacterium abscessus ATCC 19977]
gi|169241065|emb|CAM62093.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length = 239
Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats.
Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 12/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L ++++ +A +A R + L+ V+K + + G F E++ QEA
Sbjct: 7 LSAALCSVRERVRRAAEIAGRDPGEIQLLPVTKFFPASDVEELYRLGCREFGESRDQEAA 66
Query: 63 KKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL--SLEMIKQSR 118
K L D++ +G+LQ NK + + +V + + L + ++
Sbjct: 67 AKVALLDQAGHADIRWHMVGNLQRNKAKSVAHWAHSVHSVDNARLVTALDGARGAGEKRE 126
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ---KYQLNVEGLMCIPPAMGNPKPHFY 175
L +Y+QV+ + + G+ + LC Q L + GLM +PP +P F
Sbjct: 127 PLGIYLQVSLDGDNARGGVDIAAADEIDQLCAQVVASEHLELAGLMALPPREADPDQAFR 186
Query: 176 LLSEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L + R + +LS GM+ D E AI G+T VR+G+ + G+RP
Sbjct: 187 RLQQEHERVRDRYPQANRLSAGMSNDLEAAIKYGSTCVRVGTALMGQRP 235
>gi|323356547|ref|YP_004222943.1| hypothetical protein MTES_0099 [Microbacterium testaceum StLB037]
gi|323272918|dbj|BAJ73063.1| predicted enzyme with a TIM-barrel fold [Microbacterium testaceum
StLB037]
Length = 227
Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats.
Identities = 65/225 (28%), Positives = 97/225 (43%), Gaps = 7/225 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L ++L +I ++A A R ++ + V+K +R + G EN+ QE
Sbjct: 4 ALADRLADVDARIADAARSAGRDLSGITRIVVTKFHPVSLVRELRALGVRDVGENRQQEL 63
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D+ FIG Q+NK + + DV+ +V R + A L L
Sbjct: 64 TAKRDELADVVDLHWHFIGQAQTNKARAVRAAADVVHSVDRPRIADALD--AAGSGDPLD 121
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V +QVN + + G+ P + L V G+M + P P F L A
Sbjct: 122 VLLQVNLTDDAGRGGVAPRDVEALATHVAGLSTLRVRGVMAVAPLDEEPARAFERLRGSA 181
Query: 182 RECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ T +S GMT DF A+A GAT +RIGS I G RP +
Sbjct: 182 DAVRTVVPDATWISAGMTGDFPEAVAMGATHLRIGSAITGPRPVR 226
>gi|30021989|ref|NP_833620.1| putative cytoplasmic protein [Bacillus cereus ATCC 14579]
gi|218235156|ref|YP_002368700.1| conserved hypothetical protein TIGR00044 [Bacillus cereus B4264]
gi|218899054|ref|YP_002447465.1| hypothetical protein BCG9842_B1240 [Bacillus cereus G9842]
gi|296504394|ref|YP_003666094.1| hypothetical protein BMB171_C3564 [Bacillus thuringiensis BMB171]
gi|29897545|gb|AAP10821.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579]
gi|218163113|gb|ACK63105.1| conserved hypothetical protein TIGR00044 [Bacillus cereus B4264]
gi|218542197|gb|ACK94591.1| conserved hypothetical protein TIGR00044 [Bacillus cereus G9842]
gi|296325446|gb|ADH08374.1| putative cytoplasmic protein [Bacillus thuringiensis BMB171]
Length = 224
Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 108/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQENLVIVNEAIKESCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + V FIGSLQ+ KV EI++ D + ++ R A + K+ +
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRADKK---V 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ + F+ ++ ++ V GLM + P + E+
Sbjct: 116 KCFIQVKTSSEESKQGLAIEEVVSFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKEL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E +L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|291276586|ref|YP_003516358.1| hypothetical protein HMU03530 [Helicobacter mustelae 12198]
gi|290963780|emb|CBG39615.1| Putative hypothetical protein [Helicobacter mustelae 12198]
Length = 224
Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats.
Identities = 73/221 (33%), Positives = 114/221 (51%), Gaps = 12/221 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L NKL QKIE + I R + LVAVSK +KI CGQ F ENK+Q+ +
Sbjct: 4 LKNKLDFVLQKIERARIAYSR-HQIIKLVAVSKYSGVEKIAELYHCGQRAFGENKVQDLR 62
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD-VIETVSREKTASLLSLEMIKQSRFLP 121
+K LR + ++ FIG+LQ NK++ ++ +I +V + A ++ Q++ +
Sbjct: 63 EKQQHLRS-FPLEWHFIGNLQRNKINALLESRPFLIHSVDSLELAKEINKRA--QNQVVR 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
+ +QVN+ E K+GI P + + L +EGLMC+ + K F +
Sbjct: 120 ILLQVNSAREEGKNGISPEECIEVYDQILSTCKNLKLEGLMCMGAHSIDSKKIEQSFGIT 179
Query: 178 SEIARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + LSMGM+ D+E+AI+ GA +RIGS IF
Sbjct: 180 KDLFDRLQDRGAKILSMGMSGDYEIAISYGANLLRIGSEIF 220
>gi|324327799|gb|ADY23059.1| hypothetical protein YBT020_19155 [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 224
Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 107/228 (46%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQKNLTTVNEAIKQSCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + V FIGSLQ+ KV EI++ D + ++ R A + K+ +
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRADKK---V 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ +T F+ ++ ++ V GLM + P + +
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETVSFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKTL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E +L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQTKVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|213622408|ref|ZP_03375191.1| hypothetical protein SentesTyp_34798 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 186
Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats.
Identities = 56/182 (30%), Positives = 82/182 (45%), Gaps = 2/182 (1%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPA 122
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+N E KSGI + + +L + GLM IP + F + +
Sbjct: 123 LNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRLRGLMAIPAPESDYVRQFEVARQ 182
Query: 180 IA 181
+A
Sbjct: 183 MA 184
>gi|242242470|ref|ZP_04796915.1| alanine racemase domain protein [Staphylococcus epidermidis W23144]
gi|242234044|gb|EES36356.1| alanine racemase domain protein [Staphylococcus epidermidis W23144]
Length = 222
Score = 231 bits (589), Expect = 7e-59, Method: Composition-based stats.
Identities = 66/228 (28%), Positives = 106/228 (46%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L + +I+ S + ++AV+K V ++ R A G F EN+L
Sbjct: 1 MDVKENLAKIETEIDASVKKSA-HSAQPHVIAVTKYVTIERAREAYKAGIRHFGENRLDG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K K L D++L FIGSLQS KV +I++ D + R A ++ + +
Sbjct: 60 FKGKKESLPS--DIKLHFIGSLQSRKVKDIINEVDYFHALDRLSLAKEINKRA---NHVI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
++QVN E K GI + F+ ++ + + GLM + P + K F L
Sbjct: 115 KCFLQVNVSGEKSKHGIALEEVNQFINQIKEYENIQIIGLMTMAPLTDDLSYIKNLFKEL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E + T+LSMGM+ D+++A+ GAT VRIG+ + GE
Sbjct: 175 RHKRNEIQQFNLAHAPCTELSMGMSNDYQMAVEEGATFVRIGTKLVGE 222
>gi|27467781|ref|NP_764418.1| hypothetical protein SE0863 [Staphylococcus epidermidis ATCC 12228]
gi|251810618|ref|ZP_04825091.1| possible enzyme with a TIM-barrel fold [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876381|ref|ZP_06285248.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus epidermidis
SK135]
gi|293366847|ref|ZP_06613523.1| cell division protein YlmE [Staphylococcus epidermidis
M23864:W2(grey)]
gi|27315325|gb|AAO04460.1|AE016746_250 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|251805778|gb|EES58435.1| possible enzyme with a TIM-barrel fold [Staphylococcus epidermidis
BCM-HMP0060]
gi|281295406|gb|EFA87933.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus epidermidis
SK135]
gi|291319148|gb|EFE59518.1| cell division protein YlmE [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329729987|gb|EGG66378.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus epidermidis
VCU144]
gi|329734427|gb|EGG70740.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus epidermidis
VCU045]
gi|329736249|gb|EGG72521.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus epidermidis
VCU028]
Length = 222
Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats.
Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L +++I+ S + ++AV+K V ++ R A G F EN+L
Sbjct: 1 MDVKENLAKIEKEIDASIKKSA-HSAQPHVIAVTKYVTIERAREAYKVGIRHFGENRLDG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+K L DV+L FIGSLQS KV +I++ D + R A ++ + +
Sbjct: 60 FKEKKESLPS--DVKLHFIGSLQSRKVKDIINEVDYFHALDRLSLAKEINKRA---NHVI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
++QVN E K GI + F+ ++ + + GLM + P + + F L
Sbjct: 115 KCFLQVNVSGEESKHGIALEEVNQFINQIKEYENIQIIGLMTMAPLTDDLSYIRNLFKEL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E + T+LSMGM+ D+++A+ GAT VRIG+ + GE
Sbjct: 175 RHKRNEIQQFNLAHAPCTELSMGMSNDYQMAVEEGATFVRIGTKLVGE 222
>gi|229019103|ref|ZP_04175938.1| hypothetical protein bcere0030_36140 [Bacillus cereus AH1273]
gi|229025347|ref|ZP_04181765.1| hypothetical protein bcere0029_36480 [Bacillus cereus AH1272]
gi|228735932|gb|EEL86509.1| hypothetical protein bcere0029_36480 [Bacillus cereus AH1272]
gi|228742203|gb|EEL92368.1| hypothetical protein bcere0030_36140 [Bacillus cereus AH1273]
Length = 224
Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats.
Identities = 64/228 (28%), Positives = 109/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQGNLAGVNEAIKESCARAGRSMKDIKLVAVTKTVGIEKTSEVIEAGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + V FIGSLQ+ KV EI++ D + ++ R A + K+ +
Sbjct: 61 FSQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRADKK---V 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ +T F+ ++ ++ V GLM + P G + E+
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETISFIQSLQELDKIEVVGLMTMAPFTGEEEEIRRCFKEL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E +L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTVLVGK 223
>gi|293571728|ref|ZP_06682747.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium E980]
gi|291608185|gb|EFF37488.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecium E980]
Length = 225
Score = 230 bits (588), Expect = 9e-59, Method: Composition-based stats.
Identities = 67/224 (29%), Positives = 111/224 (49%), Gaps = 14/224 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + LQ KQ+I++S L R V+LVAV+K V+S + G + AEN++ +
Sbjct: 2 IADNLQKIKQEIQDSCALVHRDPKEVTLVAVTKSVESAQAEELGRAGVMNCAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L +++ IG+LQ KV IV+ D + + A + + K+ L
Sbjct: 62 QKKQDLFDFPEIKWHLIGNLQRRKVKLIVNEIDYFHALDSLRLAEEIQKRLEKE---LSC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSE 179
+I+VN E K GI P++ FV ++ V GLM + P + + F L E
Sbjct: 119 FIEVNVSGEESKHGISPDELLPFVESLAACTKIKVVGLMTMAPKEASDEQIHKVFGTLKE 178
Query: 180 IARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + +LSMGM++DF++AI GAT +R+G+ +F
Sbjct: 179 LRDLVQAKGYAHAPCNELSMGMSQDFQIAIEEGATFIRVGTALF 222
>gi|223043759|ref|ZP_03613802.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus capitis
SK14]
gi|222442856|gb|EEE48958.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus capitis
SK14]
Length = 224
Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 107/228 (46%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ +Q+I + ++AV+K V ++ + A G F EN+L+
Sbjct: 1 MSVKQNLKQIEQEISEHLEKSSNSAH-PHVIAVTKYVTIERAKEAYEAGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+K L DV FIGSLQS KV E+++ D + R A ++ +
Sbjct: 60 FKEKKAALPD--DVVFHFIGSLQSRKVKEVINEVDYFHALDRLSLAKEINKRA---DHVV 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K GI ++ +F+ + + V GLM + P + K F L
Sbjct: 115 SCFLQVNVSGEESKHGIALDEVNEFLKELKAYENIKVIGLMTMAPLTDDSVYIKSIFNDL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E + T+LSMGM+ D+++A+ GAT VRIG+ + GE
Sbjct: 175 RHKKEEIQQFNLEHAPCTELSMGMSNDYQIAVEEGATFVRIGTKLVGE 222
>gi|149177443|ref|ZP_01856047.1| hypothetical protein PM8797T_19116 [Planctomyces maris DSM 8797]
gi|148843776|gb|EDL58135.1| hypothetical protein PM8797T_19116 [Planctomyces maris DSM 8797]
Length = 236
Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats.
Identities = 63/224 (28%), Positives = 103/224 (45%), Gaps = 13/224 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I+ + I A+R +SV+L+ V+K + + G AE++ Q+
Sbjct: 8 LHKNLTGIQNRIQAACIRAQRAPESVTLIGVTKYARLEWASELIKLGCRDLAESRTQQLA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
++ L D+ FIG LQ NKV + +I +V EK + + + +
Sbjct: 68 ERAGLLPS--DLHWHFIGPLQRNKVRRTIQYSWLIHSVDSEKLLKTIDRVAGESKQNPRI 125
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
I+VN E K G + + + GLM + P + +P +P F LSE
Sbjct: 126 LIEVNLSGEANKKGFQKTELLRLWPSLCRTSHAQISGLMTMAPHVDDPELARPVFRELSE 185
Query: 180 IAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + +L +LSMGM+ DFE+ I GAT VR+GS +F
Sbjct: 186 LRDSLQAISPEQIRLQELSMGMSGDFEVGIEEGATLVRVGSALF 229
>gi|294942693|ref|XP_002783649.1| proline synthetase associated protein, putative [Perkinsus marinus
ATCC 50983]
gi|239896151|gb|EER15445.1| proline synthetase associated protein, putative [Perkinsus marinus
ATCC 50983]
Length = 246
Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats.
Identities = 72/237 (30%), Positives = 108/237 (45%), Gaps = 25/237 (10%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQEAKK 63
L+ + ++ A+ R + V L+AVSK + A CGQ F EN +QE +
Sbjct: 14 ANLERIRAEV--VALSKGRD-EEVKLLAVSKTKPMDMLMEAYEKCGQRHFGENYVQELME 70
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVS---EIVSLFDVIETVSREKTASLLSLEMIK----- 115
K + K D+Q IG LQ NKV+ + V +E+V K A L+
Sbjct: 71 KAREMPK--DIQWHMIGHLQRNKVAPLLKAVPHLYAVESVDSIKLADKLNAAAATAMDEG 128
Query: 116 -QSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCR-QKYQLNVEGLMCIP-PAMGNPK 171
+S L V+I+V T EI K+G+ ++ L + GLM + P + +
Sbjct: 129 LRSEPLNVFIEVMTSDEITKTGVEKDEDIDALAEHIATHCQGLKLFGLMTVANPDLEIAR 188
Query: 172 PHFYLLSEIARECKLT-------KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+F L+ I + +LSMGMT D +AI G+T VR+GS IFG R +
Sbjct: 189 ENFERLAAIRERLEKNLSLTYKLELSMGMTHDMPIAIECGSTEVRVGSAIFGARNYK 245
>gi|262277792|ref|ZP_06055585.1| pyridoxal phosphate enzyme, YggS family [alpha proteobacterium
HIMB114]
gi|262224895|gb|EEY75354.1| pyridoxal phosphate enzyme, YggS family [alpha proteobacterium
HIMB114]
Length = 211
Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats.
Identities = 83/220 (37%), Positives = 126/220 (57%), Gaps = 10/220 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ K+++ ++ I + ++AVSK + I+ + G + + ENK+QE
Sbjct: 1 MSIVQNLENIKKELVSNNINS-------KIIAVSKTFELSHIQPLIDHGHLAYGENKVQE 53
Query: 61 AKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
AK+KW L K ++QL IG LQ+NK + V LF I +V REK L+ +
Sbjct: 54 AKRKWEELLKINNNIQLHLIGGLQTNKSKDAVKLFHYIHSVDREKLVDTLASAETNLNLK 113
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
++QVNTG E QKSG+ T+ ++K +++ GLMCIPP + K HF +L E
Sbjct: 114 RKYFLQVNTGDEDQKSGVSIENTEQLYNYAQKK--IDIIGLMCIPPVEEDSKKHFEILRE 171
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ + L +LSMGM+ D+ A A+GAT VR+GS IFG R
Sbjct: 172 LSIKLNLKELSMGMSHDYLEAGANGATYVRVGSKIFGARD 211
>gi|260904570|ref|ZP_05912892.1| alanine racemase domain-containing protein [Brevibacterium linens
BL2]
Length = 252
Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats.
Identities = 71/231 (30%), Positives = 111/231 (48%), Gaps = 12/231 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ + L + +A + R V ++ +K + KIRVAL G + ENK+QE
Sbjct: 23 SIRDNLDEVAARAAAAAEASGRTSTDVQVLLATKTQPADKIRVALEHGFTLIGENKVQEL 82
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D + IG LQ NKV+ + I++V + + ++ + +
Sbjct: 83 VGKAEELAD-LDHEAHLIGPLQKNKVNHTLRHAHCIQSVDNLELVTKINNRLEVLDSTVD 141
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLS 178
+++QVNT E KSGI P + + + R ++ + GLM I +P + L
Sbjct: 142 IFVQVNTSREDSKSGIAPEEAEGLITELRGLSRMKLRGLMTIGLPGRTPEEIRPSYSDLR 201
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
E+ + + T+LSMGM+ DFELAIA GAT VR+GS +FG R
Sbjct: 202 ELREKLIASDVMPAEATELSMGMSNDFELAIAEGATMVRVGSSVFGARDYS 252
>gi|326941670|gb|AEA17566.1| putative cytoplasmic protein [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 224
Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 109/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + + I+ S + A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQENLVIVNEAIKESCVRAGRSLQDIKLVAVTKTVGIEKTNEVIETGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + V FIGSLQ+ KV EI++ D + ++ R A + K+ +
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRADKK---V 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ + F+ ++ ++ V GLM + P + E+
Sbjct: 116 KCFIQVKTSSEESKQGLAIEEVVSFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKEL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E +L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQTKVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|157363792|ref|YP_001470559.1| hypothetical protein Tlet_0929 [Thermotoga lettingae TMO]
gi|157314396|gb|ABV33495.1| conserved hypothetical protein [Thermotoga lettingae TMO]
Length = 223
Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats.
Identities = 71/223 (31%), Positives = 108/223 (48%), Gaps = 11/223 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MSL L K+KI+ S + R DSV L+AV+K D IR L G AEN Q+
Sbjct: 1 MSLYENLMKVKKKIDQSTAKSGRDPDSVVLIAVTKEADMDSIRQILEFGIKNLAENYAQK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + FIG +Q+NK+ IV + I +V RE+ ++ + +
Sbjct: 61 LVRKSEQF---TNAIWHFIGRIQTNKLKYIVPRCEYIHSVWREEELKEINKIAERFQKIQ 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
+ I+VN E K+G+ P + + + + + GLM + P + NP+ F L
Sbjct: 118 KILIEVNVSGEPTKAGVDPIKLEKLLKAASSLSAVQIVGLMTMAPYVENPQEVRWIFSKL 177
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + L LSMGM+ DFE+A+ GAT +RIG IF
Sbjct: 178 RQLRDIYRKDFPSLEHLSMGMSNDFEVALEEGATMIRIGRAIF 220
>gi|257784296|ref|YP_003179513.1| alanine racemase domain-containing protein [Atopobium parvulum DSM
20469]
gi|257472803|gb|ACV50922.1| alanine racemase domain protein [Atopobium parvulum DSM 20469]
Length = 244
Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 11/226 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + + ++A + R + +VAVSK V + + A G +F EN+ QE
Sbjct: 12 IKARKAQIESLVADAAKKSGRSASEIEIVAVSKTVPVEAVLAAYKAGYRVFGENRPQELT 71
Query: 63 KKWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K L + ++ IG+LQ NK++++V I ++S E A +S +
Sbjct: 72 HKLTCLSETSFGSEITFDMIGNLQKNKINQVVGKVRYIHSISSEHLAEAVSKRAEAKGSQ 131
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--HFYLL 177
V ++VN E KSG P + + + + ++V GLM + P + F L
Sbjct: 132 ESVLLEVNVSAEASKSGFSPEEVSESIQKVVELSHISVVGLMTMAPRDDPERAKRTFAGL 191
Query: 178 SEIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E+ KL LS GM+ DF AI G+T++R+G +F
Sbjct: 192 RELRDRLSQQVGLKLDVLSCGMSDDFTYAIEEGSTTIRLGRILFDP 237
>gi|24379034|ref|NP_720989.1| hypothetical protein SMU.553 [Streptococcus mutans UA159]
gi|290580945|ref|YP_003485337.1| hypothetical protein SmuNN2025_1419 [Streptococcus mutans NN2025]
gi|24376929|gb|AAN58295.1|AE014900_3 conserved hypothetical protein [Streptococcus mutans UA159]
gi|254997844|dbj|BAH88445.1| hypothetical protein [Streptococcus mutans NN2025]
Length = 223
Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + Q++ A + R KD V+++AV+K VDS + G AEN++ +
Sbjct: 1 MDLQANKEHVFQEVAAYAQKSGRSKDDVTVIAVTKYVDSDTAEKLVEAGVKHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K +D+ IGSLQ KV ++++ D + K A+ + +
Sbjct: 61 FLDKYRAL-KSYDLTWHLIGSLQRRKVKDVINFVDYFHALDSVKLAAEIQKRA---DHQI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G ++ + + ++ V GLM + P + + F
Sbjct: 117 KCFLQVNISEEASKHGFRLSEVDKALEEIQHFDKIKVIGLMTMAPIDASEQELTDIFQKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + K LSMGM+ DF +AI +G+T VRIGS F
Sbjct: 177 NALRKNLKERKLKNMPFDDLSMGMSGDFPIAIRNGSTFVRIGSAFF 222
>gi|257440008|ref|ZP_05615763.1| pyridoxal phosphate enzyme, YggS family [Faecalibacterium
prausnitzii A2-165]
gi|257197360|gb|EEU95644.1| pyridoxal phosphate enzyme, YggS family [Faecalibacterium
prausnitzii A2-165]
Length = 239
Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats.
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 12/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + ++K+ +A A R V L A K ++ + + + +F EN +QE
Sbjct: 9 MREAVLAIREKMAAAAREAGRDPAEVQLCAACKTRTAETVAASAALPIDVFGENHVQELC 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ + FIG LQ+NK+ +++ +I++V E + + E K V
Sbjct: 69 ANFDA-GAYCGKPIHFIGHLQTNKIKKVLGRASLIQSVGSEHLLTAIEKEAAKAGIVQNV 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN G E KSG+ P + + + V+GLM IPP + + L+ +
Sbjct: 128 LLEVNIGGEESKSGVSPEALWPLLDAASAQEHIRVKGLMAIPPVNDDDAQNRRYLAAVHD 187
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ LSMGM+ D+E AI GAT VRIG+ I+GER +
Sbjct: 188 LFVKAGERGYSNVEMQTLSMGMSGDYENAIREGATLVRIGTAIYGERDYR 237
>gi|314933364|ref|ZP_07840729.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus caprae C87]
gi|313653514|gb|EFS17271.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus caprae C87]
Length = 224
Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L+ +QKI + ++AV+K V ++ + A G F EN+L+
Sbjct: 1 MSVKQNLRQIEQKISEHLEKSSNSAH-PHVIAVTKYVTIERAKEAYEAGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+K L D FIGSLQS KV E+++ D + R A ++ +
Sbjct: 60 FKEKKATLPD--DAVFHFIGSLQSRKVKEVINEVDYFHALDRLSLAKEINKRA---DHVI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K GI ++ +F+ + + V GLM + P + K F L
Sbjct: 115 SCFLQVNVSGEESKHGIALDEVNEFLKELKAYENIKVIGLMTMAPLTDDSAYIKSIFNDL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E + T+LSMGM+ D+++A+ GAT VRIG+ + GE
Sbjct: 175 RHKKEEIQQFNLEHAPCTELSMGMSNDYQIAVEEGATFVRIGTKLVGE 222
>gi|283778808|ref|YP_003369563.1| alanine racemase domain-containing protein [Pirellula staleyi DSM
6068]
gi|283437261|gb|ADB15703.1| alanine racemase domain protein [Pirellula staleyi DSM 6068]
Length = 244
Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 98/228 (42%), Gaps = 16/228 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I ++ A R V LVAV+K V ++ S GQ+ E++ Q+
Sbjct: 11 LERNLLQVQARIASACERAGRAPRDVRLVAVTKYVSAEIAAEIASLGQIDLGESRPQQIW 70
Query: 63 KKWIPLRKEW-----DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+K L + ++ IG LQ NK+ + L D++ + K L E K
Sbjct: 71 EKQPILASDPRLAAQPIRWHMIGPLQRNKIRRTLPLVDLLHSGESLKLLESLDEEAAKAG 130
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHF 174
V ++VN + K G ++ + L ++GLM + + + F
Sbjct: 131 LTSHVLLEVNLSGDTTKHGFRADELPALLPQLTALTHLRIDGLMTMAALEGTLDDAQRLF 190
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGI 214
L + + + L +LSMGM+ DFE AI GAT VR+GS +
Sbjct: 191 AQLRAVRDKLREQSAGALELPELSMGMSDDFERAILEGATLVRVGSAL 238
>gi|229006183|ref|ZP_04163869.1| hypothetical protein bmyco0002_31030 [Bacillus mycoides Rock1-4]
gi|228755024|gb|EEM04383.1| hypothetical protein bmyco0002_31030 [Bacillus mycoides Rock1-4]
Length = 224
Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 64/228 (28%), Positives = 108/228 (47%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L +KI+ + A+R V LVAV+K V +K + G EN+ +
Sbjct: 1 MVVQENLAFVNEKIKIACERAERSAQEVKLVAVTKTVGIEKTNEVIEAGLTDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + V FIGSLQ+ KV EI++ D + ++ R A + KQ +
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRISLAKEIQKRTTKQ---V 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QV T E K GI +T F+ ++ ++ V GLM + P + F L
Sbjct: 116 RCFVQVKTSSEESKQGIAAEETIAFIRALQEFDKIEVVGLMTMAPFTEEEAEIRHCFKKL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ ++ + +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RGLQKQVQELGLSYAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 223
>gi|296876956|ref|ZP_06901000.1| YggS family pyridoxal phosphate enzyme [Streptococcus parasanguinis
ATCC 15912]
gi|296431991|gb|EFH17794.1| YggS family pyridoxal phosphate enzyme [Streptococcus parasanguinis
ATCC 15912]
Length = 222
Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 16/226 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + +Q++E A R +D V+++AV+K VD + G EN++ +
Sbjct: 1 MNLIENADLVRQQVETVRNKANR-QDQVNVIAVTKYVDVATTEALVKTGIQHIGENRVDK 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L KE+++ IGSLQ KV ++++ D + K A + +
Sbjct: 60 FLEKYQAL-KEYELTWHLIGSLQRRKVKDVINFVDYFHALDSVKLAQEIQKRAE---HPI 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G P++ D + Q ++ + GLM + P + + F
Sbjct: 116 KCFLQVNISGEESKHGFAPDELDDVLAEIAQLDKIEIVGLMTMAPFEASQEELQDIFSKT 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ ++ + ++LSMGM+RDFE+AIA+GAT VRIG+ F
Sbjct: 176 HQLQKQLEKKQLKNMPFSELSMGMSRDFEVAIANGATYVRIGTSFF 221
>gi|293376230|ref|ZP_06622473.1| pyridoxal phosphate enzyme, YggS family [Turicibacter sanguinis
PC909]
gi|292645122|gb|EFF63189.1| pyridoxal phosphate enzyme, YggS family [Turicibacter sanguinis
PC909]
Length = 216
Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 62/223 (27%), Positives = 109/223 (48%), Gaps = 17/223 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +Q I+ +R + V +VA +K V+ ++++ CG I EN++
Sbjct: 1 MNIEKNVEQVQQDIQA----CQRDCEKVRIVAATKYVNVEQMKRLYDCGITIMGENRVDA 56
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L ++ FIG+LQS KV E+++ DV+ ++ R A + K L
Sbjct: 57 LLEKKAQL--HLPIEWHFIGTLQSRKVKEVINEIDVLHSLDRLSLAKEIEKYRDK---PL 111
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
IQVN E K G+ ++ F+ ++ V GLM + P N + F L
Sbjct: 112 KCLIQVNISGEKTKHGLAKDEVVTFIEQLNSFSKIEVIGLMTMAPNTENELTLRRCFSEL 171
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + + +LSMGM+ D+ +A+ GAT VR+GS +F
Sbjct: 172 KQLQLDLEKNYKSCQELSMGMSNDYLIAVEEGATYVRLGSILF 214
>gi|296327467|ref|ZP_06870013.1| YggS family pyridoxal phosphate enzyme [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
gi|296155293|gb|EFG96064.1| YggS family pyridoxal phosphate enzyme [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
Length = 223
Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + I + V LVAV+K + I L Q I ENK+Q
Sbjct: 1 MSIKTNVEEILEDI----KKYSPYPEKVKLVAVTKYSSVEDIEKFLETRQNICGENKVQV 56
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K + K ++ FIG+LQ NKV I+ D+I +V++ A ++ + + S+
Sbjct: 57 IKDKIEYFKEKNKKIKWHFIGNLQKNKVKYIIDDVDLIHSVNKLSLAQEINKKAEQSSKI 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ V +++N E K G ++ K +I + LN+ G+M + P + + F
Sbjct: 117 MDVLLEINVYGEESKQGYSLDELKCDIIELQNLKNLNIIGVMTMAPFTDDEKILRMVFSE 176
Query: 177 LSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L +I E LT+LSMGM+ D+++A+ G+T +R+G+ IF
Sbjct: 177 LRKIKDELNKEYFNNNLTELSMGMSNDYKIALQEGSTFIRVGTKIF 222
>gi|294626281|ref|ZP_06704884.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294666673|ref|ZP_06731910.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292599427|gb|EFF43561.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292603579|gb|EFF46993.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 248
Score = 229 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 75/223 (33%), Positives = 102/223 (45%), Gaps = 11/223 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+ LQ I +A + V L+AVSK + + + GQ F EN +QEA
Sbjct: 21 ASSLQQILDAIHAAAAAR--ARADVRLLAVSKTKPADAVAALAAQGQRAFGENYVQEADA 78
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K LR D++ IG LQSNK FD ++TV R K LL+ L V
Sbjct: 79 KIAQLRA-LDLEWHLIGHLQSNKAELASLCFDWVQTVDRAKLIPLLARHRPDDRAPLNVL 137
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEI 180
IQVN E K G P V + +L + GLM IP P + F + +
Sbjct: 138 IQVNIDDEDSKHGCAPEAIDSLVEAIALQPRLQLRGLMAIPAPFPDQARRQAAFSRMQAL 197
Query: 181 ARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + LSMGM+ DF AIA+GAT VR+G+ +FG R
Sbjct: 198 FQQLQARHRQVDTLSMGMSSDFAEAIAAGATMVRVGTALFGAR 240
>gi|148238907|ref|YP_001224294.1| TIM-barrel fold family protein [Synechococcus sp. WH 7803]
gi|147847446|emb|CAK22997.1| Predicted enzyme with a TIM-barrel fold [Synechococcus sp. WH 7803]
Length = 216
Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats.
Identities = 63/201 (31%), Positives = 95/201 (47%), Gaps = 3/201 (1%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V+L+AVSK + IR ++CGQ+ F E+++QEA K L ++ FIG LQ+
Sbjct: 16 PSGVNLLAVSKGHPADAIRDLVACGQLDFGESRVQEALPKQNALADLPQIRWHFIGRLQA 75
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV +V F I ++ A S +++ + +QV + K G + KD
Sbjct: 76 NKVRAVVKAFRWIHSIDSLALAERTSRIALEEQQQPTALLQVKLRDDPAKGGWEIDALKD 135
Query: 145 FVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI 201
+ L + GLM + P + F +A L SMGM+ D+ A
Sbjct: 136 AWPELQALQGLQISGLMTMAPLGVGAEDRSALFRECRHLADALGLEHCSMGMSGDWREAA 195
Query: 202 ASGATSVRIGSGIFGERPCQT 222
A+GAT VR+GS +FG R T
Sbjct: 196 AAGATWVRLGSVLFGPRQLPT 216
>gi|229013085|ref|ZP_04170250.1| hypothetical protein bmyco0001_35230 [Bacillus mycoides DSM 2048]
gi|229061506|ref|ZP_04198850.1| hypothetical protein bcere0026_35910 [Bacillus cereus AH603]
gi|229134710|ref|ZP_04263519.1| hypothetical protein bcere0014_36190 [Bacillus cereus BDRD-ST196]
gi|228648756|gb|EEL04782.1| hypothetical protein bcere0014_36190 [Bacillus cereus BDRD-ST196]
gi|228717740|gb|EEL69390.1| hypothetical protein bcere0026_35910 [Bacillus cereus AH603]
gi|228748339|gb|EEL98199.1| hypothetical protein bmyco0001_35230 [Bacillus mycoides DSM 2048]
Length = 224
Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats.
Identities = 64/228 (28%), Positives = 110/228 (48%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S + A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQGNLADVNEVIKESCVRAGRSMKDIKLVAVTKTVGIEKTSEVIETGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + V FIGSLQ+ KV EI++ D + ++ R A + K+ +
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRADKK---V 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ +T F+ ++ ++ V GLM + P G + E+
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETISFIQSLQELDKIEVVGLMTMAPFTGEEEEIRRCFKEL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E +L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTVLVGK 223
>gi|322388908|ref|ZP_08062500.1| cell division protein YlmE [Streptococcus infantis ATCC 700779]
gi|321140291|gb|EFX35804.1| cell division protein YlmE [Streptococcus infantis ATCC 700779]
Length = 223
Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 95/226 (42%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L Q++ + R SVS++AV+K VD + G EN++ +
Sbjct: 1 MDLKENTNQVFQQVTKAIQETGREDGSVSVIAVTKYVDIVTAANLIDQGVKHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L + V IGSLQ KV +++ D + K A + R +
Sbjct: 61 FLEKYHALSDK-GVTWHLIGSLQRRKVKDVIPFVDYFHALDSLKLAQEIQKRA---DRTV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G + + Q+ GLM + P + F
Sbjct: 117 KCFLQVNISGEESKHGFSKEELLTVLPDLSSLDQIEYVGLMTMAPFEAQTEELQKIFKET 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ + + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QELQQYIREQQFPNMPMTELSMGMSRDYKEAIQCGSTFVRIGTAFF 222
>gi|239636335|ref|ZP_04677337.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus warneri
L37603]
gi|239597690|gb|EEQ80185.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus warneri
L37603]
Length = 223
Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 17/226 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +I + +++AV+K V ++ + A G F EN+L+ K
Sbjct: 4 VKENLAQINSEINEHREKSN-ISTQPNVIAVTKYVTIERAKEAYQAGIRHFGENRLEGFK 62
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L K D L FIGSLQS KV ++++ D + R A ++ +
Sbjct: 63 EKKEALPK--DAVLHFIGSLQSRKVKDVINDVDYFHALDRMSLAKEINKRAE---HTISC 117
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
++QVN E K GI ++ F+ +Q + + GLM + P + + F L
Sbjct: 118 FLQVNVSGESSKHGISLDEVNAFIDEIKQFENIKIVGLMTMAPYTDDEGYIQSLFRKLRT 177
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E K +LSMGM+ D+ +AI GAT VRIG+ + GE
Sbjct: 178 KRDEIKQLNLEYAPCEELSMGMSNDYPIAIEEGATFVRIGTKLVGE 223
>gi|121603196|ref|YP_980525.1| alanine racemase domain-containing protein [Polaromonas
naphthalenivorans CJ2]
gi|120592165|gb|ABM35604.1| alanine racemase domain protein [Polaromonas naphthalenivorans CJ2]
Length = 259
Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats.
Identities = 67/240 (27%), Positives = 105/240 (43%), Gaps = 23/240 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + L++ +I + + A R V L+AVSK + + A++ GQ F EN + E
Sbjct: 19 TIAHHLRLVHDRINVACLAAGRDPCGVRLLAVSKTFGADAVADAVAAGQQAFGENYIAEG 78
Query: 62 KKKWIPLRK------------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL 109
+K + LR+ ++ IG +QSNK + FD +++V R K A L
Sbjct: 79 VEKILALRRWQAEEAARSGVAAAALEWHCIGPIQSNKTRPVAEHFDWVQSVDRLKIAQRL 138
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
S + L + +QVN KSG+ P + +L + GLM IP +
Sbjct: 139 SEQRPPGLAPLQICLQVNIDGGANKSGLAPEDVLALAEEVARLPRLVLRGLMAIPEPAID 198
Query: 170 ---PKPHFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
I + LS+GMT D E AI +G+T VR+G+ IFG R
Sbjct: 199 FVAACAIHASAKAIFDHINAAGVLAVPMDTLSLGMTADLEAAIHAGSTMVRVGTAIFGGR 258
>gi|124023841|ref|YP_001018148.1| hypothetical protein P9303_21481 [Prochlorococcus marinus str. MIT
9303]
gi|123964127|gb|ABM78883.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
str. MIT 9303]
Length = 225
Score = 229 bits (585), Expect = 2e-58, Method: Composition-based stats.
Identities = 67/221 (30%), Positives = 98/221 (44%), Gaps = 13/221 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + ++ D V L+AVSK + IR GQ F E++LQE
Sbjct: 1 MTLSARWHDLVDRLA----------DGVHLLAVSKGHPATLIRQLAELGQQDFGESRLQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L ++ FIG LQ+NKV +V F VI +V A ++ ++
Sbjct: 51 ALPKLEDLADLKGLRWHFIGRLQANKVRGVVRSFAVIHSVDSLALAERIARIAAEEQCCP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
V +QV + K G Q K Q L + GLM + P + F
Sbjct: 111 QVMLQVKFRDDPSKGGFSQEQLKQAWPDLIQLSHLQLIGLMTMAPIGLSLEQRQELFRQC 170
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A + L SMGM+ D+ A+ +GAT +R+GS +FG R
Sbjct: 171 RELADQLGLPDCSMGMSGDWLEAMHAGATWLRLGSILFGAR 211
>gi|324997732|ref|ZP_08118844.1| pyridoxal phosphate enzyme, YggS family protein [Pseudonocardia sp.
P1]
Length = 247
Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats.
Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L +++++ + A R +VSL+AV+K V ++ + + G FAEN+ QEA
Sbjct: 13 LKERLGAVRERLDAACRAAGRDPAAVSLLAVTKTVPARDVADLIDLGLAAFAENRAQEAG 72
Query: 63 KKWIP---LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK---- 115
K LR + D + F+G LQ NKV ++ IE+V + A + E+ K
Sbjct: 73 TKVADVARLRPDADARWHFVGGLQRNKVRAVLPWVTRIESVDSPRLARAIDKEVAKARDR 132
Query: 116 --QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP- 172
+S LPV +Q + + + G+ + + L + L + GLM + P +G P+P
Sbjct: 133 GERSGPLPVLVQYSVDGDPDRGGVPDDGLDELTDLVTELPGLELGGLMAVAPLVGEPEPA 192
Query: 173 ----HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
R +LS GM+ D E A+ G+T VR+G+ + GER
Sbjct: 193 FATIAAAARRTRERHPGAVELSAGMSADLETAVDHGSTVVRVGTALVGER 242
>gi|237738364|ref|ZP_04568845.1| proline synthetase associated protein [Fusobacterium mortiferum
ATCC 9817]
gi|229420244|gb|EEO35291.1| proline synthetase associated protein [Fusobacterium mortiferum
ATCC 9817]
Length = 228
Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats.
Identities = 66/226 (29%), Positives = 116/226 (51%), Gaps = 16/226 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N ++ ++ I++ +I + V +AV+K VD++ + L CG +F ENK Q
Sbjct: 6 NIKNNIEEIQKDIKDYSIY----PEKVKFIAVTKYVDAEVMNSILDCGVKVFGENKAQVI 61
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K+K+ E D++ FIG+LQ NKV I +I +V++ A + ++ +R
Sbjct: 62 KEKYEKYLSEGRKDIEWHFIGNLQKNKVKYIAPFVKLIHSVNKLSLAQEIDKRALQNNRV 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ V +++N E K G + + + +N+ GLM + P + + + F
Sbjct: 122 IDVLLEINIAGEESKEGYELEELYKELPQLLELKNINIIGLMTMAPFVDDETLVRGVFRR 181
Query: 177 LSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L EI E KLT+LSMGMT D+++A+ GAT +R+G I+
Sbjct: 182 LREIKDELNKKTFNGKLTELSMGMTNDYKIALEEGATIIRVGRKIY 227
>gi|271964379|ref|YP_003338575.1| alanine racemase domain-containing protein [Streptosporangium
roseum DSM 43021]
gi|270507554|gb|ACZ85832.1| alanine racemase domain protein [Streptosporangium roseum DSM
43021]
Length = 234
Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats.
Identities = 60/221 (27%), Positives = 98/221 (44%), Gaps = 6/221 (2%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + I + A R ++ ++L+AVSK + +R+ + G EN+ QEA
Sbjct: 10 IAAGLAEVEASIAEACRAAGRAREELTLIAVSKTYPASDVRLLAALGVTDVGENRDQEAS 69
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K D+ FIG LQ+NK + DV+ +V R + + LS E ++ R +
Sbjct: 70 VKVRE-CAGLDLTWHFIGQLQTNKARSVAGYADVVHSVDRPRLVTALSQEAVRAGREITC 128
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+QV + + G P + + G+M + P P F L EIA+
Sbjct: 129 LVQVALDGDPGRGGARPADVAALAEALAVAPGIRLGGVMAVAPLGEEPGRAFARLREIAQ 188
Query: 183 -----ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+S GM+ D AIA+GAT +R+G+ + G R
Sbjct: 189 VMRDAHPGADVISAGMSGDMSEAIANGATHLRVGTALLGRR 229
>gi|307297898|ref|ZP_07577702.1| alanine racemase domain protein [Thermotogales bacterium
mesG1.Ag.4.2]
gi|306915984|gb|EFN46367.1| alanine racemase domain protein [Thermotogales bacterium
mesG1.Ag.4.2]
Length = 217
Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats.
Identities = 65/227 (28%), Positives = 107/227 (47%), Gaps = 23/227 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ + +I D V++VA SK + +I L G EN +QEA+
Sbjct: 2 IAENVKRLRSEI----------PDYVTIVAASKTRTASEILEILESGLKDVGENYVQEAE 51
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ + + + IG LQ NKV + +FD+I+TV K A + S+ +PV
Sbjct: 52 GKFEAIGNK--ARWHCIGHLQRNKVKRAIEIFDIIQTVDSFKLAEEIDKRCSYLSKKMPV 109
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
++VN+G E K+G++P + + V GLM + P +P +P L
Sbjct: 110 MVEVNSGKEENKAGVLPENVLQLITEISPLKNIAVVGLMTMGPFTEDPEEIRPSLRLTRR 169
Query: 180 IAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ E ++ LSMGM+ + +AI G+ VR+G+ IFGER
Sbjct: 170 LFEEISKEKIEGVEMKYLSMGMSNSYRVAIEEGSNMVRLGTIIFGER 216
>gi|21243652|ref|NP_643234.1| hypothetical protein XAC2925 [Xanthomonas axonopodis pv. citri str.
306]
gi|21109229|gb|AAM37770.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 230
Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats.
Identities = 71/200 (35%), Positives = 95/200 (47%), Gaps = 9/200 (4%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V L+AVSK + + + GQ F EN +QEA K LR D++ IG LQSNK
Sbjct: 24 DVRLLAVSKTKPADAVAALAAQGQRAFGENYVQEADAKIAQLRA-LDLEWHLIGHLQSNK 82
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
FD ++TV R K LL+ L V IQVN E K G P+
Sbjct: 83 AELASQCFDWVQTVDRAKLIPLLARHRPDDRAPLNVLIQVNIDDEDSKHGCAPDAIDSLA 142
Query: 147 ILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIARECKL-----TKLSMGMTRDFE 198
+ +L + GLM IP P + F + + R+ + LSMGM+ DF
Sbjct: 143 EAIALQPRLQLRGLMAIPAPFPDQARRQAAFSRMQALFRQLQARHRQVDTLSMGMSSDFA 202
Query: 199 LAIASGATSVRIGSGIFGER 218
AIA+GAT VR+G+ +FG R
Sbjct: 203 EAIAAGATMVRVGTALFGAR 222
>gi|291236536|ref|XP_002738198.1| PREDICTED: proline synthetase co-transcribed homolog [Saccoglossus
kowalevskii]
Length = 298
Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats.
Identities = 75/253 (29%), Positives = 112/253 (44%), Gaps = 34/253 (13%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDS------------VSLVAVSKMVDSKKIRVALSCG 49
+G L+ ++I+ + R + S LVAVSK I+ A G
Sbjct: 12 DVGKTLKSVLERIQTACD--SRSQKSKCNKFQDLPKVQPRLVAVSKTKAISTIQTAYIHG 69
Query: 50 QVIFAENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREK 104
Q F EN + E +K + + D++ ++G LQ NKV++I+ ++E++ K
Sbjct: 70 QRHFGENYVHEIIEKATDPTIINECCDIRWHYVGHLQRNKVNKIIGIPNLFMVESLDTPK 129
Query: 105 TASLLSLEMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLM 161
A +L+ ++ + L V +QVNT E K G + L GLM
Sbjct: 130 LADVLNAAWGRKKKVGKLKVMVQVNTSNEASKHGCKLCDAESLAGHILLSCSNLEFNGLM 189
Query: 162 CIP----PAMGNPKPHFYLLSEIAREC-------KLT-KLSMGMTRDFELAIASGATSVR 209
I P P F L + E K T +LSMGM+ DFE AI+ G+T+VR
Sbjct: 190 TIGRVNHELSQGPNPDFQQLVQCREEICKKFMLDKATVELSMGMSNDFEHAISVGSTNVR 249
Query: 210 IGSGIFGERPCQT 222
+GS IFG RP T
Sbjct: 250 VGSAIFGARPDAT 262
>gi|283782601|ref|YP_003373355.1| pyridoxal phosphate enzyme, YggS family [Gardnerella vaginalis
409-05]
gi|298253236|ref|ZP_06977028.1| TIM-barrel fold enzyme [Gardnerella vaginalis 5-1]
gi|283441773|gb|ADB14239.1| pyridoxal phosphate enzyme, YggS family [Gardnerella vaginalis
409-05]
gi|297532631|gb|EFH71517.1| TIM-barrel fold enzyme [Gardnerella vaginalis 5-1]
Length = 266
Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats.
Identities = 73/243 (30%), Positives = 109/243 (44%), Gaps = 28/243 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + + I + R +SV+L+A +K D +I AL G + EN+ QE
Sbjct: 22 IADGVHSVQDAIAQAESHYGRKAESVTLLAATKTRDVGEIMAALKAGVRVIGENRPQEIV 81
Query: 63 KKWIPLRKEW-----------DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
K LR E ++ L IG LQSNK+++++ L + I++V + A +S
Sbjct: 82 AKAEILRAEAAREGLSVGVNGEIPLYLIGQLQSNKINKVLPLANGIQSVDGIELAQKISA 141
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP- 170
+ V ++VN E KSG P + D LN+ G M + + +
Sbjct: 142 RAQNLGLCVDVMLEVNVSGEATKSGCAPERAIDEAFAISSLPALNLHGFMTLGARVDDET 201
Query: 171 --KPHFYLLSEIAR-------------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ F L EI KL +LSMGM+ DF AIA G+T VRIGS IF
Sbjct: 202 IVRSGFAKLREIRDCVSKQLVQDYDGSSVKL-ELSMGMSGDFAWAIAEGSTMVRIGSAIF 260
Query: 216 GER 218
G R
Sbjct: 261 GPR 263
>gi|226479872|emb|CAX73232.1| putative Proline synthetase co-transcribed bacterial homolog
protein [Schistosoma japonicum]
Length = 253
Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats.
Identities = 75/235 (31%), Positives = 111/235 (47%), Gaps = 19/235 (8%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +IE + ++ + LVAVSK + I A + GQ F ENK+ K
Sbjct: 4 NLHSILNRIEEARKVSTSGQKFCRLVAVSKEKPVQSIIEAYNIGQRHFGENKIVHLYDKS 63
Query: 66 ---IPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMI-KQSRF 119
++ D++ FIG +Q+NK+ + V+ ++ET+ A +L
Sbjct: 64 HSPEVVKCCPDIRWHFIGRIQTNKIKRLAGVNNLFMVETLDSISHAEILDSLWALNHQMP 123
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGN----PKPHF 174
L + IQVNT E+QK GI P++ DF + L V GLMCI + P P F
Sbjct: 124 LKIMIQVNTSGELQKGGIKPSEVIDFYSQIKAKCSNLEVAGLMCIGQEGVDINSGPNPDF 183
Query: 175 YLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L + + +LSMGM+ DFE AI G+T+VRIG+ IFG+R +
Sbjct: 184 VKLVQCREKLASHLGKSPFDFELSMGMSHDFEHAIQLGSTNVRIGTAIFGQRDSK 238
>gi|239978967|ref|ZP_04701491.1| hypothetical protein SalbJ_06012 [Streptomyces albus J1074]
gi|291450846|ref|ZP_06590236.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291353795|gb|EFE80697.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 239
Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats.
Identities = 67/231 (29%), Positives = 107/231 (46%), Gaps = 14/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ +Q+I + A R +D V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLERVEQRIAGACAAAGRDRDEVTLIVVTKTYPASDVRLLAELGVGQVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ D+ F+G LQ+NK + D +++V R K + LS + R L
Sbjct: 68 P-KAAACADLDLTWHFVGQLQTNKARSVAGYADFVQSVDRAKLVTSLSSAAERAGRELGC 126
Query: 123 YIQVNTGYEIQ----KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPHF 174
+QV E + G+ P+ ++ L L + G+M + P G P F
Sbjct: 127 LVQVALDAEAGGRGDRGGVAPDGVEELAGLIEAAPGLRLGGVMTVAPLSGTYAGRPAAAF 186
Query: 175 YLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L EI+ + T +S GM+ D E A+A+GAT VR+GS + G RP
Sbjct: 187 ERLREISTSLRAAWPAATMVSAGMSGDLEHAVAAGATHVRVGSAVLGVRPA 237
>gi|315658525|ref|ZP_07911397.1| YggS family pyridoxal phosphate enzyme [Staphylococcus lugdunensis
M23590]
gi|315496854|gb|EFU85177.1| YggS family pyridoxal phosphate enzyme [Staphylococcus lugdunensis
M23590]
Length = 222
Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats.
Identities = 61/228 (26%), Positives = 109/228 (47%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + L +Q+IE+ + ++++AV+K V ++ + A G F EN+L+
Sbjct: 1 MDVKSNLAHIQQEIESHKKKSTIDSH-INVIAVTKYVTIERAKEAFDAGLRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L + D + FIGSLQS KV ++++ D + R A ++ + +
Sbjct: 60 FLEKKAALPE--DAVMHFIGSLQSRKVKDVINEVDYFHALDRMSLAKEINKRA---NHTI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K GI N+ F+ + + + GLM + P + + F L
Sbjct: 115 SCFLQVNVSGEASKHGIHLNEVDKFIDDIKAYENIKIVGLMTMAPFTDDTQYIQELFKKL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ + T+LSMGM+ D+ +A+ GAT +RIG+ + GE
Sbjct: 175 RLKRDDIQQRQLTYAPCTELSMGMSNDYPVAVEEGATYIRIGTKLVGE 222
>gi|295102832|emb|CBL00377.1| pyridoxal phosphate enzyme, YggS family [Faecalibacterium
prausnitzii L2-6]
Length = 239
Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats.
Identities = 65/230 (28%), Positives = 106/230 (46%), Gaps = 12/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ ++K+ +A A R V L A K + + + + +F EN +QE
Sbjct: 9 MREAVEAIREKMAAAARAAGRDPAGVQLCAACKTRTADTVAASAALAIDVFGENHVQELC 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ FIG LQ+NK+ +++ +I++V E + + E K V
Sbjct: 69 ANYDA-GAYCGKPSHFIGHLQTNKIKKVLGRASLIQSVDSEHLLAAIEKEAAKTGIVQDV 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-- 180
++VN G E KSG+ P Q + + + V+GLM IPP + + L+++
Sbjct: 128 LLEVNIGGEESKSGVSPEQLWPLLDAAAAEEHIRVKGLMAIPPVNDDDAQNRRYLAQVYK 187
Query: 181 ---------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ K+ LSMGM+ DFE AI GAT VRIG+ I+GER
Sbjct: 188 LFVQAGERGYQNVKMETLSMGMSGDFENAIREGATLVRIGTAIYGERDYS 237
>gi|22298581|ref|NP_681828.1| hypothetical protein tll1037 [Thermosynechococcus elongatus BP-1]
gi|22294761|dbj|BAC08590.1| tll1037 [Thermosynechococcus elongatus BP-1]
Length = 233
Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats.
Identities = 68/224 (30%), Positives = 103/224 (45%), Gaps = 15/224 (6%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67
+ + ++ L V L+AVSK + + IR A G F E+++QEA K
Sbjct: 5 AEIRDR---ASHLKSTLPPHVRLIAVSKFMPAAAIRAAYEAGIRDFGESRVQEAASKRAE 61
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS-RFLPVYIQV 126
L D+ IG LQ+NKV + + LFD I TV R K A + + ++ +QV
Sbjct: 62 LADLTDITWHLIGHLQTNKVRQALQLFDWIHTVDRWKLAERIDTLLKERGAASPRCLLQV 121
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA----- 181
+ QK G + + + L GLM I P P + E+
Sbjct: 122 KLRPDPQKYGWEKSDLEAALPQLDALLHLRCWGLMTILPLGLAPSEQLQVFQELRAWGEE 181
Query: 182 ------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ + + SMGMT+D+ LA+ +GAT VRIG+ IFG+RP
Sbjct: 182 LSTKGWQQLRWQEYSMGMTQDYPLAVQAGATMVRIGTAIFGDRP 225
>gi|254469009|ref|ZP_05082415.1| conserved hypothetical protein TIGR00044 [beta proteobacterium
KB13]
gi|207087819|gb|EDZ65102.1| conserved hypothetical protein TIGR00044 [beta proteobacterium
KB13]
Length = 223
Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats.
Identities = 67/227 (29%), Positives = 103/227 (45%), Gaps = 14/227 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + +++I+ R +SL+AVSK +KI + G + F EN +QE
Sbjct: 1 MDIK-NYSRIREEIQIFEENHNRK---ISLIAVSKKQSIEKINYLIDYGHLDFGENYVQE 56
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + + FIG +QSNK +I F+ + ++ R K + E + +
Sbjct: 57 GVDKIKTI-SNPSLIWHFIGPIQSNKTKQITEHFNWVHSIDRLKIYERIKNEANSLRKKI 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNP---KPHFYL 176
IQ+N E KSGI N + + L G+M IP N + F L
Sbjct: 116 NFLIQINISKENTKSGININDLDEILDGIDPSDDYLRFRGIMAIPSNTSNINLLEKEFSL 175
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L++ K + LSMGM+ D+ LA+ G+T +R+GS IFGER
Sbjct: 176 LNKAYISLKERFHTVDTLSMGMSNDYHLAMDHGSTMIRVGSKIFGER 222
>gi|146087566|ref|XP_001465860.1| hypothetical protein [Leishmania infantum JPCM5]
gi|134069960|emb|CAM68291.1| putative alanine racemase [Leishmania infantum JPCM5]
gi|322499304|emb|CBZ34378.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 245
Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats.
Identities = 75/233 (32%), Positives = 110/233 (47%), Gaps = 23/233 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + + + R V+L+AVSK + + GQ +F EN +QE
Sbjct: 14 TLALNYKAVRDTVAQ--ESGNRR---VTLIAVSKTKSPACLLNLYNLGQRVFGENYVQEL 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIK--Q 116
+K L + D FIG LQSNKV E+ V VI+T+ E AS ++ K
Sbjct: 69 GEKAKVLPE--DTVWHFIGHLQSNKVKELLEGVPNLRVIQTIDSENLASKVNEGCRKYRG 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVI-LCRQKYQLNVEGLMCIPPAMGNPKPH- 173
R L VYIQVNT E KSG P + + + L ++GLM I +P
Sbjct: 127 GRPLEVYIQVNTSGEETKSGTEPGEATVALAKYIVDECPLLRLKGLMTIGMPDYTSRPEN 186
Query: 174 FYLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L++ + + +LSMGM+ D+ AI G+T+VR+G+ IFG+R
Sbjct: 187 FECLTKCREDVAQAVQMAPEDLELSMGMSGDYVNAIRMGSTTVRVGTSIFGQR 239
>gi|302533947|ref|ZP_07286289.1| alanine racemase domain-containing protein [Streptomyces sp. C]
gi|302442842|gb|EFL14658.1| alanine racemase domain-containing protein [Streptomyces sp. C]
Length = 239
Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats.
Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I ++ A R ++ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAENLARVEERIASACAAAGREREEVTLIVVTKTYPASDVRLLADLGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + F+G LQ+NKV + V+++V R K + LS Q R L
Sbjct: 68 PKAAA-CSDLPLSWHFVGQLQTNKVRSVAGYAQVVQSVDRPKLVTALSAAAEAQGRELGC 126
Query: 123 YIQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP----PAMGNPKPHF 174
+Q+ E + G P+ + L L ++GLM + P G + F
Sbjct: 127 LVQIALDAESGERGARGGAAPDLMAELADLVAAAPGLRIDGLMTVAPLAGPYAGREQAAF 186
Query: 175 YLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ E++ + T +S GM+ D E A+ +GAT VR+G+ + G RP
Sbjct: 187 ERMMELSSSLREAHPAATMVSAGMSADLEQAVLAGATHVRVGTAVLGARP 236
>gi|242373474|ref|ZP_04819048.1| alanine racemase domain protein [Staphylococcus epidermidis
M23864:W1]
gi|242348837|gb|EES40439.1| alanine racemase domain protein [Staphylococcus epidermidis
M23864:W1]
Length = 224
Score = 228 bits (583), Expect = 3e-58, Method: Composition-based stats.
Identities = 64/228 (28%), Positives = 107/228 (46%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L +++I N ++AV+K V ++ + A G F EN+L+
Sbjct: 1 MSVKQNLNKIEEEISNHIEK-NSISAQPHVIAVTKYVTIERAKEAYQAGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+K L D FIGSLQS KV ++++ D + R A ++ + +
Sbjct: 60 FKEKKAALPD--DAIFHFIGSLQSRKVKDVINEVDYFHALDRLSLAKEINKRA---NHVI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K GI ++ +F+ + + + GLM + P + K F+ L
Sbjct: 115 SCFVQVNVSGEESKHGIALDEVNEFLNELKDYENIKIVGLMTMAPLTDDASYIKSIFHDL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E + T+LSMGM+ D+++A+ GAT VRIG+ + GE
Sbjct: 175 RHKKEEIQQFNLEHAPCTELSMGMSNDYQIAVEEGATFVRIGTKLVGE 222
>gi|156836871|ref|XP_001642476.1| hypothetical protein Kpol_264p4 [Vanderwaltozyma polyspora DSM
70294]
gi|156113010|gb|EDO14618.1| hypothetical protein Kpol_264p4 [Vanderwaltozyma polyspora DSM
70294]
Length = 270
Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats.
Identities = 72/241 (29%), Positives = 106/241 (43%), Gaps = 23/241 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAK-RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
L + +I ++ KD V L+AVSK+ + +++ G F EN +QE
Sbjct: 31 ELVTNYESILAQIRDAEAKYGINNKDQVMLLAVSKLKPASDVQLLYDHGIRHFGENYVQE 90
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMIKQS- 117
+K I L K D+ FIG LQSNK ++ +ETV K A+ L+ K +
Sbjct: 91 LIEKSIALPK--DINWHFIGGLQSNKCKDLAKIPNLYAVETVDSLKKANKLNEARSKYNP 148
Query: 118 --RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC---RQKYQLNVEGLMCIPPAMGNPKP 172
+ +IQ+NT E QKSG+ +I +N+ GLM I +
Sbjct: 149 DSPPINCFIQINTSNEEQKSGLSDESEIFEIIEFFFNSNTKNINLIGLMTIGSWETSHNN 208
Query: 173 -------HFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L + KLSMGM+ DF+ AI G + VR+G+ IFG RP
Sbjct: 209 DPDYINLDFENLVNWKSKIDSKYNTNLKLSMGMSADFKQAIKQGTSEVRVGTDIFGVRPA 268
Query: 221 Q 221
+
Sbjct: 269 K 269
>gi|330993134|ref|ZP_08317072.1| UPF0001 protein [Gluconacetobacter sp. SXCC-1]
gi|329759904|gb|EGG76410.1| UPF0001 protein [Gluconacetobacter sp. SXCC-1]
Length = 204
Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats.
Identities = 84/193 (43%), Positives = 111/193 (57%), Gaps = 2/193 (1%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVS 88
LVAVSK + AL GQ +F EN++QEA K+ LR W D++L IG LQ+NK
Sbjct: 3 LVAVSKFHPQASVIAALEAGQRLFGENRVQEAAAKFPALRTRWPDLRLHIIGGLQTNKAL 62
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV-I 147
E V + D+IE++ R + L+ + R + +QVNTG E QKSG+ + F+
Sbjct: 63 EAVRIADMIESLDRPALSDALARAADRAGRLPGLLVQVNTGDEGQKSGVRLEEADAFINA 122
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATS 207
+ V GLMCIPP +P PHF L+ +A L +SMGM+ DFE AIA GAT
Sbjct: 123 SLERFGPAVVRGLMCIPPHDRDPTPHFRTLATMAHRHGLDVVSMGMSADFERAIACGATL 182
Query: 208 VRIGSGIFGERPC 220
VR+GS IFG RP
Sbjct: 183 VRVGSAIFGARPA 195
>gi|229086465|ref|ZP_04218637.1| hypothetical protein bcere0022_30490 [Bacillus cereus Rock3-44]
gi|228696782|gb|EEL49595.1| hypothetical protein bcere0022_30490 [Bacillus cereus Rock3-44]
Length = 222
Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 16/226 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L ++I+ + A+R + + LVAV+K V +K + G EN+ +
Sbjct: 1 MQENLAFVNEEIKKACERAERLVEEIKLVAVTKTVGIEKTNEVIEAGLTDLGENRNEGFL 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ + V FIGSLQ+ KV EI++ D + ++ R A + KQ +
Sbjct: 61 EKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRISLAKEIQKRATKQ---IRC 115
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFYLLSE 179
++QV T E K GI +T F+ ++ ++ V GLM + P G + F L
Sbjct: 116 FVQVKTSSEESKQGIAAEETIAFIRALQEFDKIEVVGLMTMAPFTGKEAEIRHCFKTLRS 175
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ ++ + +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 LQKQVQELGLSYAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 221
>gi|229168641|ref|ZP_04296363.1| hypothetical protein bcere0007_35980 [Bacillus cereus AH621]
gi|228614797|gb|EEK71900.1| hypothetical protein bcere0007_35980 [Bacillus cereus AH621]
Length = 224
Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats.
Identities = 64/228 (28%), Positives = 110/228 (48%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S + A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQGNLVDVNEAIKESCVRAGRSMKDIKLVAVTKTVGIEKTSEVIETGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + V FIGSLQ+ KV EI++ D + ++ R A + K+ +
Sbjct: 61 FLQKYEYFSSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRADKK---V 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ +T F+ ++ ++ V GLM + P G + E+
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETISFIQSLQELDKIEVVGLMTMAPFTGEEEEIRRCFKEL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E +L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTVLVGK 223
>gi|258511277|ref|YP_003184711.1| alanine racemase domain-containing protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478003|gb|ACV58322.1| alanine racemase domain protein [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 229
Score = 228 bits (583), Expect = 4e-58, Method: Composition-based stats.
Identities = 66/225 (29%), Positives = 107/225 (47%), Gaps = 11/225 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++ + ++E + + R V +VAV+K + + G AEN+ Q A+
Sbjct: 6 VRQRVEEVRARVEAACRRSGRDPAGVRIVAVTKTASPDVLPALHAAGIRDAAENRWQMAR 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + FIG+LQ+NKV +V F + ++ R + A LS E +++ + V
Sbjct: 66 DKLAH-PAASSLDWHFIGTLQTNKVKYVVPRFAWVHSLDRPELAHALSEEAVRRGVVVNV 124
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
+QVN E QK G+ P + V L + L V GLM + P P+ F L
Sbjct: 125 LVQVNISGEAQKHGVAPEDAEALVRLAHELPGLAVRGLMTMAPIAERPEDVRHVFAGLRA 184
Query: 180 IARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ E + L +LSMGM+ DFE+A+ GAT +RIG +
Sbjct: 185 LMHELRSRLSLEALDQLSMGMSDDFEVAVEEGATMIRIGRRLVNP 229
>gi|257870261|ref|ZP_05649914.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|257804425|gb|EEV33247.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
Length = 224
Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats.
Identities = 71/226 (31%), Positives = 111/226 (49%), Gaps = 14/226 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q+I++S L R V LVAV+K VDS+K R + G AEN++++
Sbjct: 2 ISENLHKIQQEIQDSCALVSRKASEVRLVAVTKSVDSEKTRKIIEAGVTDCAENRVEKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L +V FIG+LQ KV I++ D + K A + K +
Sbjct: 62 EKKQQLADFPEVNWHFIGNLQRRKVKSIINEVDYFHALESLKLAQEIQKRAAK---TIAC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
+++VN E K GI P+ F+ + ++NV GLM + P + +F+ L E
Sbjct: 119 FVEVNISGEASKQGIAPDDVVSFIEELQPFDKINVIGLMTMAPLASSEAEQLHYFHQLKE 178
Query: 180 IARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ + T+ SMGM+ DF +AI +GAT VRIG+ +F E
Sbjct: 179 LQEKIAALHLAHAPCTETSMGMSNDFAVAIQAGATVVRIGTALFQE 224
>gi|319947485|ref|ZP_08021717.1| cell division protein YlmE [Streptococcus australis ATCC 700641]
gi|319746425|gb|EFV98686.1| cell division protein YlmE [Streptococcus australis ATCC 700641]
Length = 222
Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats.
Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 16/226 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + ++ + A R D ++++AV+K V + + + G EN++ +
Sbjct: 1 MNLIENKERIFSQVAQAMETANR-TDQMNVIAVTKYVGIDQAKALVDTGVRHIGENRVDK 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ E + IGSLQ KV E+++ D + K A + S +
Sbjct: 60 FLEKYQALKDE-GLTWHLIGSLQRRKVKEVINFVDYFHALDSMKLAQEIQKRA---SHPI 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
+IQVN E K G P + + L + GLM + P + F
Sbjct: 116 KCFIQVNISGEESKHGFAPEELDALLPEIEALDNLQIVGLMTMAPFEASQDELQAIFAAT 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E + T+LSMGM+RD+++AIA+GAT VRIG+ F
Sbjct: 176 HQLQKELQKKQLKNMPFTELSMGMSRDYDVAIANGATFVRIGTSFF 221
>gi|311063717|ref|YP_003970442.1| hypothetical protein BBPR_0280 [Bifidobacterium bifidum PRL2010]
gi|310866036|gb|ADP35405.1| Conserved hypothetical protein with alanine racemase, N-terminal
domain [Bifidobacterium bifidum PRL2010]
Length = 274
Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats.
Identities = 70/249 (28%), Positives = 103/249 (41%), Gaps = 33/249 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + I + A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 23 IRDGVHRVLDAIAEAESAAGRAPGSVKLLAATKTRDVGEIMAAIDAGVRMIGENRPQEVM 82
Query: 63 KKWIPLR---------------------KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVS 101
K LR + IG LQ+NK+ +I+ + IE+V
Sbjct: 83 AKAEGLRRLCADRGFALGTGDGDTTRPSDAEHIPFHLIGQLQANKIGKILPDVNTIESVD 142
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161
+ A ++ + + + V ++VN E KSG P D Q + +EGLM
Sbjct: 143 GVELAQRIARRAVARGITVGVLLEVNESGEASKSGCDPQAAVDIAAQIAQLDGIRLEGLM 202
Query: 162 CIPPAMGNP---KPHFYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVR 209
I + + + F L T+LSMGMT D LAIA GAT VR
Sbjct: 203 TIGAHVDDEATIRACFAHLRGTRDTILASRAPGTEHCTELSMGMTHDMALAIAEGATIVR 262
Query: 210 IGSGIFGER 218
+G+ IFGER
Sbjct: 263 VGTAIFGER 271
>gi|163941640|ref|YP_001646524.1| hypothetical protein BcerKBAB4_3727 [Bacillus weihenstephanensis
KBAB4]
gi|163863837|gb|ABY44896.1| conserved hypothetical cytosolic protein [Bacillus
weihenstephanensis KBAB4]
Length = 224
Score = 227 bits (581), Expect = 5e-58, Method: Composition-based stats.
Identities = 64/228 (28%), Positives = 110/228 (48%), Gaps = 16/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ L + I+ S + A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MTVQGNLADVNEVIKESCVRAGRSMKDIKLVAVTKTVGIEKTSEVIETGIIDLGENRNEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ + V FIGSLQ+ KV EI++ D + ++ R A + K+ +
Sbjct: 61 FLQKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRADKK---V 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+IQV T E K G+ +T F+ ++ ++ V GLM + P G + E+
Sbjct: 116 KCFIQVKTSSEESKQGLAIEETIFFIQSLQELDKIEVVGLMTMAPFTGEEEEIRRCFKEL 175
Query: 181 A------RECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+E +L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 RMLQTEVQELELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTVLVGK 223
>gi|310286820|ref|YP_003938078.1| Alanine racemase [Bifidobacterium bifidum S17]
gi|309250756|gb|ADO52504.1| Alanine racemase [Bifidobacterium bifidum S17]
Length = 274
Score = 227 bits (581), Expect = 6e-58, Method: Composition-based stats.
Identities = 70/249 (28%), Positives = 103/249 (41%), Gaps = 33/249 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + I + A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 23 IRDGVHRVLDAIAEAESAAGRAPGSVKLLAATKTRDVGEIMAAIDAGVRMIGENRPQEVM 82
Query: 63 KKWIPLR---------------------KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVS 101
K LR + IG LQ+NK+ +I+ + IE+V
Sbjct: 83 AKAEGLRRLCADRGFALGTGDGDTTRPSDAEHIPFHLIGQLQANKIGKILPDVNTIESVD 142
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161
+ A ++ + + + V ++VN E KSG P D Q + +EGLM
Sbjct: 143 GVELAQRIARRAVARGITVGVLLEVNESGEASKSGCDPQAAVDIAAQIAQLDGIRLEGLM 202
Query: 162 CIPPAMGNP---KPHFYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVR 209
I + + + F L T+LSMGMT D LAIA GAT VR
Sbjct: 203 TIGAHVDDEATIRACFAHLRGTRDTILASRAPGTEHCTELSMGMTHDMALAIAEGATIVR 262
Query: 210 IGSGIFGER 218
+G+ IFGER
Sbjct: 263 VGTAIFGER 271
>gi|87311294|ref|ZP_01093416.1| hypothetical protein DSM3645_27246 [Blastopirellula marina DSM
3645]
gi|87286034|gb|EAQ77946.1| hypothetical protein DSM3645_27246 [Blastopirellula marina DSM
3645]
Length = 235
Score = 227 bits (581), Expect = 6e-58, Method: Composition-based stats.
Identities = 57/224 (25%), Positives = 92/224 (41%), Gaps = 13/224 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + KI +A A R D V L+AV+K VD + G E++ Q+
Sbjct: 9 LAENLAEVRGKIAAAADRAGRSSDDVRLIAVTKYVDLETTEALFELGCCDLGESRPQQLW 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ V+ IG LQ+NK + + + + R +
Sbjct: 69 ARAEQFAARP-VRWHMIGHLQTNKAKRTAPVLSWLHAGDSLRLLKAVD-AAATADRRVQA 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSE 179
+++N + K GI P+ + + L + GLM + G + +F L E
Sbjct: 127 LLEINISGDAAKHGIAPDDAPRVLEEAAKLPHLEIRGLMGMAALAGGVDVARANFAALRE 186
Query: 180 IAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ +LT+LSMGM+ D++ AI GAT VR+GS +F
Sbjct: 187 LRDRLAADAPDNIELTELSMGMSGDYQAAIEEGATMVRVGSSLF 230
>gi|169827022|ref|YP_001697180.1| hypothetical protein Bsph_1446 [Lysinibacillus sphaericus C3-41]
gi|168991510|gb|ACA39050.1| UPF0001 protein [Lysinibacillus sphaericus C3-41]
Length = 238
Score = 227 bits (581), Expect = 6e-58, Method: Composition-based stats.
Identities = 60/225 (26%), Positives = 106/225 (47%), Gaps = 16/225 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L I + R ++V ++AV+K V ++ + A+ G EN+ +
Sbjct: 8 ILANLNKLNDLIAAAETRVNREANNVQIIAVTKEVSVERTQEAIEAGLTHLGENRPEGLN 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K ++ DV +IGSLQ+ KV ++++ D + ++ R A + +K +
Sbjct: 68 RKISAIQA--DVNWHYIGSLQTRKVKQVINSIDFLHSLDRLSLAEEIEKRAVK---PVKC 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+IQVN E K G+ + FV R ++ V GLM + P + + F L +
Sbjct: 123 FIQVNVSGEESKHGLSMEEVLPFVESLRSFTKVQVVGLMTMAPNTEDEALIRSVFKQLKQ 182
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
++ T+LSMGM+ DFE+A+ GAT VR+G+ + G
Sbjct: 183 CQQQIAEQGFAHAPCTELSMGMSNDFEIAVEEGATFVRVGTALVG 227
>gi|325915089|ref|ZP_08177417.1| pyridoxal phosphate enzyme, YggS family [Xanthomonas vesicatoria
ATCC 35937]
gi|325538701|gb|EGD10369.1| pyridoxal phosphate enzyme, YggS family [Xanthomonas vesicatoria
ATCC 35937]
Length = 285
Score = 227 bits (581), Expect = 6e-58, Method: Composition-based stats.
Identities = 71/207 (34%), Positives = 99/207 (47%), Gaps = 10/207 (4%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ V L+AVSK + + + GQ F EN +QEA K LR E ++ IG LQS
Sbjct: 79 RSDVRLLAVSKTKPADAVAALAAQGQRAFGENYVQEAHTKIAALR-ELGLEWHLIGHLQS 137
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK FD ++TV R K LL+ L V IQVN E K G P+
Sbjct: 138 NKADIASQYFDWVQTVDRAKLIPLLARYRPDDRAPLNVLIQVNIDDEDSKYGCAPDAIDR 197
Query: 145 FVILCRQKYQLNVEGLMCIP-PAMGNPKP--HFYLLSEIAREC-----KLTKLSMGMTRD 196
+ +L + GLM IP P + F + ++ + ++ LSMGM+ D
Sbjct: 198 LADAIALQPRLQLRGLMAIPAPFPDQARRVSAFARMQDLFAQLQQRHRQVDTLSMGMSAD 257
Query: 197 FELAIASGATSVRIGSGIFGER-PCQT 222
F AIA+GAT VR+G+ +FG R P +
Sbjct: 258 FAEAIAAGATMVRVGTALFGARAPAAS 284
>gi|153840601|ref|ZP_01993268.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
gi|149745736|gb|EDM56866.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810]
Length = 214
Score = 227 bits (581), Expect = 6e-58, Method: Composition-based stats.
Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 11/184 (5%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD---VQLRFIGSLQSNK 86
L+AVSK + I A GQ F EN +QE K + + ++ FIG +QSNK
Sbjct: 1 LLAVSKTKPVEAILEAYQAGQTAFGENYVQEGVSKVQHFAEHYPDNRIEWHFIGPIQSNK 60
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
+ FD + T+ R K A L+ + ++ + L V IQVNT E KSG+ + +
Sbjct: 61 SRLVAEHFDWVHTIDRAKIAQRLNEQRPQELKPLQVLIQVNTSGEDSKSGVSDAEIFELA 120
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA--------RECKLTKLSMGMTRDFE 198
L + L + GLM IP + + ++A + ++ LSMGM+ D
Sbjct: 121 ELISRLPNLTLRGLMSIPANVSDYDAQLREFEKLATLKQTLEQQYPEIDTLSMGMSGDMT 180
Query: 199 LAIA 202
AI
Sbjct: 181 AAIR 184
>gi|166711257|ref|ZP_02242464.1| hypothetical protein Xoryp_07245 [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 230
Score = 227 bits (581), Expect = 6e-58, Method: Composition-based stats.
Identities = 70/202 (34%), Positives = 95/202 (47%), Gaps = 9/202 (4%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ V L+AVSK ++ + + GQ F EN +QEA K LR ++ IG LQS
Sbjct: 22 RTDVRLLAVSKTKPAEAVAALAAQGQRAFGENYVQEADAKIAQLRA-LGLEWHLIGHLQS 80
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK FD ++TV R K LL+ L V IQVN E K G P
Sbjct: 81 NKAELASQCFDWVQTVDRAKLIPLLARHRPDDCAPLKVLIQVNIDDEDSKHGCAPEAIDS 140
Query: 145 FVILCRQKYQLNVEGLMCIP-PAMGNPK--PHFYLLSEIARECK-----LTKLSMGMTRD 196
+ +L + GLM IP P + F + + + K + LSMGM+ D
Sbjct: 141 LAEAIALQPRLQLRGLMAIPAPFPDQARRGAAFTRMQVLFEQLKTRYRQVDTLSMGMSSD 200
Query: 197 FELAIASGATSVRIGSGIFGER 218
F AIA+GAT VR+G+ +FG R
Sbjct: 201 FAEAIAAGATMVRVGTALFGAR 222
>gi|297243143|ref|ZP_06927081.1| TIM-barrel fold enzyme [Gardnerella vaginalis AMD]
gi|296889354|gb|EFH28088.1| TIM-barrel fold enzyme [Gardnerella vaginalis AMD]
Length = 266
Score = 227 bits (581), Expect = 7e-58, Method: Composition-based stats.
Identities = 70/242 (28%), Positives = 108/242 (44%), Gaps = 26/242 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + + I + R +SV+L+A +K D +I AL G + EN+ QE
Sbjct: 22 IADGVHSVQDAIAQAESHYGRKAESVTLLAATKTRDVGEIMAALRAGVRVIGENRPQEIV 81
Query: 63 KKWIPLRKEW-----------DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
K LR + ++ L IG LQSNK+++++ L + I++V + A +S
Sbjct: 82 AKAEILRAQAAREGLSVGVNGEIPLYLIGQLQSNKINKVLPLANGIQSVDGIELAQKIST 141
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP- 170
V ++VN E KSG P + D + LN+ G M + + +
Sbjct: 142 RTQNLGLCTDVMLEVNVSGEATKSGCAPERAIDEALAISSLPALNLRGFMTLGARVDDEK 201
Query: 171 --KPHFYLLSEIAR----ECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ F L EI + +LSMGM+ DF AIA G+T VRIGS IFG
Sbjct: 202 IVRSGFAKLREIRDCVSEQLAQDYDGNSAKLELSMGMSGDFAWAIAEGSTMVRIGSAIFG 261
Query: 217 ER 218
R
Sbjct: 262 PR 263
>gi|33862479|ref|NP_894039.1| hypothetical protein PMT0206 [Prochlorococcus marinus str. MIT
9313]
gi|33640592|emb|CAE20381.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 225
Score = 227 bits (580), Expect = 8e-58, Method: Composition-based stats.
Identities = 68/221 (30%), Positives = 99/221 (44%), Gaps = 13/221 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + ++ D V L+AVSK + IR GQ F E++LQE
Sbjct: 1 MTLSARWHDLVDRLA----------DGVHLLAVSKGHPATLIRQLAELGQQDFGESRLQE 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K L ++ FIG LQ+NKV +V F VI +V A +S +++
Sbjct: 51 ALPKLEALADLKGLRWHFIGRLQANKVRGVVRSFAVIHSVDSLALAERISRIAVEEQCCP 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
V +QV + K G Q K Q L + GLM + P + F
Sbjct: 111 QVMLQVKFRDDPSKGGFSQEQLKQAWPDLIQLSHLQLIGLMTMAPIGLSLEQRQELFGQC 170
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
E+A + L SMGM+ D+ A+ +GAT +R+GS +FG R
Sbjct: 171 RELADQLGLPDCSMGMSGDWLEAMHAGATWLRLGSLLFGAR 211
>gi|225703472|gb|ACO07582.1| Proline synthetase co-transcribed bacterial homolog protein
[Oncorhynchus mykiss]
Length = 282
Score = 227 bits (580), Expect = 8e-58, Method: Composition-based stats.
Identities = 76/250 (30%), Positives = 111/250 (44%), Gaps = 30/250 (12%)
Query: 1 MS--LGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFA 54
MS +G LQ ++ +A A+RPK LVAV K + A G F
Sbjct: 6 MSEEVGKALQAVVDRVNQAA--ARRPKTLPAVPPRLVAVGKTKPPDMVIEAYRKGHRNFG 63
Query: 55 ENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLL 109
EN + E + L +++ FIG LQ N V+++ V ++ETV K A +
Sbjct: 64 ENYVNELVDRASNPQILESCPEIEWHFIGHLQKNNVNKLLGVPNLFMVETVDSVKLADKV 123
Query: 110 S----LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIP 164
+ ++ L + +Q+NT E K G+ P +T V + L+ GLM I
Sbjct: 124 NSSWLRLRTASTQTLKIMVQINTSGEESKHGLPPGETVTTVKHILSKCSALHFSGLMTIG 183
Query: 165 PAMGN----PKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGS 212
+ P P F L E+ +L +LSMGM+ DFE AI G+T+VR+GS
Sbjct: 184 RYGHDLADGPNPDFQALLSRRQEVCASLQLPLEDVELSMGMSTDFEHAIEVGSTNVRVGS 243
Query: 213 GIFGERPCQT 222
IFG R
Sbjct: 244 TIFGNRDYPN 253
>gi|116071131|ref|ZP_01468400.1| hypothetical protein BL107_15835 [Synechococcus sp. BL107]
gi|116066536|gb|EAU72293.1| hypothetical protein BL107_15835 [Synechococcus sp. BL107]
Length = 220
Score = 227 bits (580), Expect = 8e-58, Method: Composition-based stats.
Identities = 63/195 (32%), Positives = 95/195 (48%), Gaps = 4/195 (2%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
L+AVSK + IR S GQ F E++LQEA +K L + +Q FIG LQ NKV
Sbjct: 21 RLLAVSKGHPAASIRAVASLGQQAFGESRLQEAVEKQ-ALLSDLKLQWHFIGRLQRNKVR 79
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
+V F VI +V A +S +++ V +QV + K G+ P++
Sbjct: 80 GVVKAFSVIHSVDSLALAERVSRIAVEEGCCPDVLLQVKFREDPTKGGMEPSELLSAWPQ 139
Query: 149 CRQKYQLNVEGLMCIPPA---MGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA 205
L + GLM + P + F +A + L SMGM+ D+ A+A+G+
Sbjct: 140 LCALPSLRLMGLMTMAPLGLEGEERQSLFVECRSLADQLGLPDCSMGMSGDWTEAVAAGS 199
Query: 206 TSVRIGSGIFGERPC 220
T +R+GS +FG+R
Sbjct: 200 TWLRLGSAVFGQRDV 214
>gi|325571370|ref|ZP_08146870.1| cell division protein YlmE [Enterococcus casseliflavus ATCC 12755]
gi|325155846|gb|EGC68042.1| cell division protein YlmE [Enterococcus casseliflavus ATCC 12755]
Length = 223
Score = 227 bits (580), Expect = 9e-58, Method: Composition-based stats.
Identities = 63/224 (28%), Positives = 103/224 (45%), Gaps = 14/224 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q+I++S L R V L AV+K VD++ R L G AEN++++
Sbjct: 2 ISENLHKIQQEIQDSCALVSRNTSEVCLTAVTKSVDTETTRELLENGVRDCAENRVEKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L DV+ FIG+LQ KV +++ D + K A + +
Sbjct: 62 EKKAALTDYPDVRWHFIGNLQRRKVKSVINEIDFFHALDSIKLAQEIQKRAE---HPINC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+++VN E K GI + F+ ++ V GLM + P + + E+ R
Sbjct: 119 FVEVNVSQEATKQGIFVEEVVAFIEALASFDKIRVVGLMTMAPLTASKDEQHQIFKELKR 178
Query: 183 ------ECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ LT + SMGM+ DF +AI GAT +R+G+ +F
Sbjct: 179 IQQQIADLHLTHAPCLETSMGMSNDFPIAIQEGATFIRVGTALF 222
>gi|319939624|ref|ZP_08013983.1| YggS family pyridoxal phosphate enzyme [Streptococcus anginosus
1_2_62CV]
gi|319811213|gb|EFW07519.1| YggS family pyridoxal phosphate enzyme [Streptococcus anginosus
1_2_62CV]
Length = 223
Score = 227 bits (580), Expect = 9e-58, Method: Composition-based stats.
Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + + A R K+SV ++AV+K VDS + + G EN++ +
Sbjct: 1 MDLEKNTYQVLENVAQATQKANRSKNSVEVIAVTKYVDSSTAKELVKAGIHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ E V IG+LQ KV ++++ D + K A ++ +
Sbjct: 61 FLEKYQALKDE-RVTWHLIGTLQRRKVKDVINYVDYFHALDSVKLAQEINKRAE---HII 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + + + + + GLM + P + + +
Sbjct: 117 KCFLQVNISKEASKHGFAIEEIDTILPELEKLENIQIVGLMTMAPIEADEAELNVIFQQA 176
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ T LSMGM+ D+ +AIA+G+T VRIG+ F
Sbjct: 177 YQLQQRLQRKQLPNMPFTDLSMGMSHDYAIAIANGSTFVRIGTAFF 222
>gi|23465017|ref|NP_695620.1| hypothetical protein BL0419 [Bifidobacterium longum NCC2705]
gi|23325620|gb|AAN24256.1| hypothetical protein in upf0001 [Bifidobacterium longum NCC2705]
Length = 294
Score = 227 bits (580), Expect = 9e-58, Method: Composition-based stats.
Identities = 66/252 (26%), Positives = 104/252 (41%), Gaps = 36/252 (14%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I ++ A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 40 ITDGVHRVLDRIASAESAAGRAAGSVQLLAATKTRDVGEILAAIDAGIRVIGENRPQEIT 99
Query: 63 KKWIPLRKEW------------------------DVQLRFIGSLQSNKVSEIVSLFDVIE 98
K L K + IG LQ+NK+ +++ + D IE
Sbjct: 100 VKADGLAKRLGERGYSLGVIDAAEADTANAAAATHIPFHLIGQLQANKIGKVLPVVDTIE 159
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
+V + A ++ + + V ++VN E KSG P+ D L ++
Sbjct: 160 SVDSIELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQ 219
Query: 159 GLMCIPPAMGNPKPH---FYLLSEIAREC---------KLTKLSMGMTRDFELAIASGAT 206
GLM I + + + F L + T+LSMGMT D AI G+T
Sbjct: 220 GLMTIGAHVDDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMAYAIEEGST 279
Query: 207 SVRIGSGIFGER 218
VR+G+ IFGER
Sbjct: 280 IVRVGTAIFGER 291
>gi|256825472|ref|YP_003149432.1| pyridoxal phosphate enzyme, YggS family [Kytococcus sedentarius DSM
20547]
gi|256688865|gb|ACV06667.1| pyridoxal phosphate enzyme, YggS family [Kytococcus sedentarius DSM
20547]
Length = 254
Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats.
Identities = 67/238 (28%), Positives = 103/238 (43%), Gaps = 21/238 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + LQ +IE + A R + V+LV V+K ++ + + G EN+ QEA
Sbjct: 14 LADGLQATLARIEEACGRAGRSPEEVTLVVVTKFFGAEDLARLVRLGVRDVGENRDQEAA 73
Query: 63 KKWIPLRKEWD---------VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K V++ FIG +QS K + D++ +V R K L
Sbjct: 74 AKAAAWPDHLPAGERGVAEAVRMHFIGQVQSKKAGSVAGYADLVHSVDRLKLVGALDRGA 133
Query: 114 IKQSRFLPVYIQVNTG-------YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA 166
+ R L V +QV+ + + G P+ + + +L++ GLM + P
Sbjct: 134 QRHGRRLAVCVQVDLDPVVEGGEPDAGRGGAHPDDLPELCAAVDRSERLDLAGLMTVAPP 193
Query: 167 MGNPKPHFYLLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P F L+ +A T LS GM+ D E A+A+GAT VR+GS I G RP
Sbjct: 194 QVEPARAFAELARVHAAVLAEHPGATMLSAGMSGDLEAAVAAGATHVRVGSAIMGARP 251
>gi|212715372|ref|ZP_03323500.1| hypothetical protein BIFCAT_00267 [Bifidobacterium catenulatum DSM
16992]
gi|212661678|gb|EEB22253.1| hypothetical protein BIFCAT_00267 [Bifidobacterium catenulatum DSM
16992]
Length = 280
Score = 227 bits (579), Expect = 9e-58, Method: Composition-based stats.
Identities = 67/255 (26%), Positives = 102/255 (40%), Gaps = 39/255 (15%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I ++ A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 23 IADGVHRVLDRIASAEQHAGRDAGSVRLLAATKTRDVGEIMAAIDAGVRMIGENRPQEVT 82
Query: 63 KKWIPLR---------------------------KEWDVQLRFIGSLQSNKVSEIVSLFD 95
K L + IG LQSNK+ +++ + +
Sbjct: 83 AKAEGLMARCAERGFALGVAGDSGIASASGDSEVACERIPFHLIGQLQSNKIGKVLPVVN 142
Query: 96 VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL 155
IE+V A +S + + + V ++VN E KSG P L
Sbjct: 143 AIESVDSLDLAEKISRRAVARGVTVGVLLEVNESGETSKSGCSPAYAIRIAQKIGTLDGL 202
Query: 156 NVEGLMCIPPAMGNP---KPHFYLLSEIAREC---------KLTKLSMGMTRDFELAIAS 203
++GLM I + + + F L +LSMGMT D ELAIA
Sbjct: 203 ELQGLMTIGAHVSDETAIRRGFEHLRRTRDRILASGEPGTQSCRELSMGMTGDMELAIAE 262
Query: 204 GATSVRIGSGIFGER 218
G+T VR+G+ IFGER
Sbjct: 263 GSTIVRVGTAIFGER 277
>gi|228475001|ref|ZP_04059729.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus hominis
SK119]
gi|228270986|gb|EEK12374.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus hominis
SK119]
Length = 224
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 106/228 (46%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ + +I + + K + +++AV+K V + + A G F EN+++
Sbjct: 1 MKVTENLEKIQAEINHHLEKSV-IKTAPNVIAVTKYVTIDRAKEAYDAGLRHFGENRVEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L K DV + FIGSLQS KV +++ D + + R A ++ + +
Sbjct: 60 FLEKKQALPK--DVTMHFIGSLQSRKVKYVINDIDYLHALDRLSLAKEINKRA---THTI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
+IQVN E K GI ++ DF+ + + + GLM + P + F L
Sbjct: 115 SCFIQVNVSGEETKHGIALSEVNDFIEQIKAFDNIKIVGLMTMAPYTDDKDYIHQLFKQL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E K LSMGM+ D+ +A+ GAT +RIG+ + GE
Sbjct: 175 RLKRDEIKNLKLNYAPCEYLSMGMSNDYTIAVEEGATFIRIGTKLVGE 222
>gi|330686339|gb|EGG97944.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus epidermidis
VCU121]
Length = 223
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 103/226 (45%), Gaps = 17/226 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L +I + +++AV+K V ++ + A G F EN+L+ K
Sbjct: 4 VKDNLAQINLEINEHREKSN-ISTQPNVIAVTKYVTIERAKEAYQAGIRHFGENRLEGFK 62
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L K D L FIGSLQS KV ++++ D + R A ++ +
Sbjct: 63 EKKEALPK--DAVLHFIGSLQSRKVKDVINDVDYFHALDRMSLAKEINKRAE---HTISC 117
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSE 179
++QVN E K GI ++ F+ +Q + + GLM + P + + F L
Sbjct: 118 FLQVNVSGESSKHGISLDEVNAFIEEIKQFENIKIVGLMTMAPYTDDNAYIQSLFRKLRT 177
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E K +LSMGM+ D+ +AI GAT VRIG+ + GE
Sbjct: 178 KRDEIKKLNLEYAPCEELSMGMSNDYPIAIEEGATFVRIGTKLVGE 223
>gi|306824218|ref|ZP_07457588.1| YggS family pyridoxal phosphate enzyme [Bifidobacterium dentium
ATCC 27679]
gi|304552421|gb|EFM40338.1| YggS family pyridoxal phosphate enzyme [Bifidobacterium dentium
ATCC 27679]
Length = 319
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 66/255 (25%), Positives = 103/255 (40%), Gaps = 39/255 (15%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + ++ + A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 62 ITDGVHRVLDRVATAEAQAGREVGSVKLLAATKTRDVGEIMTAIDAGVRMIGENRPQEVT 121
Query: 63 KKWIPL---------------------------RKEWDVQLRFIGSLQSNKVSEIVSLFD 95
K L + IG LQSNK+ +++ + +
Sbjct: 122 AKAEGLLKQCAQRGFTLGAATAEVVAGGAVAGDADGTHIPFHLIGQLQSNKIGKVLPVVN 181
Query: 96 VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL 155
IE+V A +S + + + V ++VN E KSG P L
Sbjct: 182 TIESVDSVDLAEKISRRAVARGITVGVLLEVNESGEASKSGCDPAHAIRIAQKIGTLDGL 241
Query: 156 NVEGLMCIPPAMGNP---KPHFYLLSEIAREC---------KLTKLSMGMTRDFELAIAS 203
++GLM I + + + F L + + +LSMGMT D ELAIA
Sbjct: 242 ELQGLMTIGAHVDDETTIRKCFAHLRKTRDLILASKTPGTERCLELSMGMTGDMELAIAE 301
Query: 204 GATSVRIGSGIFGER 218
G+T VR+G+ IFGER
Sbjct: 302 GSTIVRVGTAIFGER 316
>gi|308161351|gb|EFO63803.1| PLP dependent protein [Giardia lamblia P15]
Length = 220
Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats.
Identities = 74/228 (32%), Positives = 111/228 (48%), Gaps = 21/228 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L+ K + ++ LVAVSK + I A + GQ +F EN +QE
Sbjct: 3 NIAGALRDIKAGLGHA-----------KLVAVSKTKPVEAILEAYAAGQRLFGENYVQEL 51
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRF 119
KK ++ D++ FIG LQ+NK +I S+ + ++TV +K A LS
Sbjct: 52 VKKTRAVQNVANDIEWHFIGHLQTNKARDIASIPNCVVQTVDSDKLARRLSDLRPGDLDP 111
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
L V IQ+NT E+ KSG + + + +L + GLM I + F L +
Sbjct: 112 LRVMIQINTSGELTKSGCTVDGAIELAQVIGVLPRLRLIGLMTIGAP-NSSADSFQALID 170
Query: 180 ----IARECKLT---KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
I + KL +LSMGM+ D++LA+ GA VR+GS IFGER
Sbjct: 171 ARNVIEKAIKLEEKLELSMGMSSDYQLAVRMGADYVRVGSAIFGERTY 218
>gi|160942923|ref|ZP_02090162.1| hypothetical protein FAEPRAM212_00400 [Faecalibacterium prausnitzii
M21/2]
gi|158445824|gb|EDP22827.1| hypothetical protein FAEPRAM212_00400 [Faecalibacterium prausnitzii
M21/2]
gi|295103910|emb|CBL01454.1| pyridoxal phosphate enzyme, YggS family [Faecalibacterium
prausnitzii SL3/3]
Length = 239
Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats.
Identities = 61/230 (26%), Positives = 103/230 (44%), Gaps = 12/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + ++K+ +A A R +V L A K ++ I + + +F EN +QE
Sbjct: 9 MRQAVAEIREKMAAAAREAGRDPAAVQLCAACKTRTAQTIAASAALPIDVFGENHVQELC 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ FIG LQ+NK+ +++ +I++V E + E K +
Sbjct: 69 ANYDA-GAYCGKPSHFIGHLQTNKIKKVLGRASLIQSVDSEHLLLAIEKEAAKAGIVQDI 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++VN G E K+G P + + + V+GLM IPP + + L+++ +
Sbjct: 128 LLEVNIGGEESKTGAAPELLWPLLDTAAAQQHIRVKGLMAIPPVNDDDAQNRRYLAQVYQ 187
Query: 183 -----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ LSMGM+ DFE AI GAT VRIG+ I+G R
Sbjct: 188 LFVRAGERGYHNVEMQTLSMGMSGDFENAIREGATLVRIGTAIYGARDYS 237
>gi|170072194|ref|XP_001870118.1| proline synthetase associated protein [Culex quinquefasciatus]
gi|167868284|gb|EDS31667.1| proline synthetase associated protein [Culex quinquefasciatus]
Length = 253
Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats.
Identities = 77/217 (35%), Positives = 104/217 (47%), Gaps = 24/217 (11%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNK 86
LVAVSK I S GQ F EN +QE +K L D+Q FIG LQSNK
Sbjct: 35 LVAVSKTKPVDLILDGYSIGQRDFGENYVQELIEKAHDAKILEHCKDIQWHFIGHLQSNK 94
Query: 87 VSEIVSL--FDVIETVSREKTASLLSLEMIK------QSRFLPVYIQVNTGYEIQKSGIM 138
+++IV+L +IETV K A L+ K S L V IQ+NT E +K+G
Sbjct: 95 INKIVNLPNLYMIETVHNAKLAENLNKAWEKVKADKPDSSKLNVLIQINTSGEDEKNGTN 154
Query: 139 PNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN----PKPHFYLLSE--------IARECK 185
P + + + LN G+M I + P P F L + ++ +
Sbjct: 155 PAEAVNLYRFVTEKCPNLNCHGVMTIGRFGHDYSTGPNPDFIELMKCHADICSTFEKDPE 214
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++SMGM+ DF AI G+T VR+GS IFG R +T
Sbjct: 215 EVQVSMGMSDDFVQAIEMGSTIVRVGSSIFGARAKKT 251
>gi|228998681|ref|ZP_04158268.1| hypothetical protein bmyco0003_32420 [Bacillus mycoides Rock3-17]
gi|228761149|gb|EEM10108.1| hypothetical protein bmyco0003_32420 [Bacillus mycoides Rock3-17]
Length = 222
Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats.
Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 16/226 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +KI+ + A+R V LVAV+K V +K + G EN+ +
Sbjct: 1 MQENLAFVNEKIKIACERAERSAQEVKLVAVTKTVGIEKTNEVIEAGLTDLGENRNEGFL 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ + V FIGSLQ+ KV EI++ D + ++ R A + KQ +
Sbjct: 61 QKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRISLAKEIQKRTTKQ---VRC 115
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
++QV T E K GI +T F+ ++ ++ V GLM + P + F L
Sbjct: 116 FVQVKTSSEESKQGIAAEETIAFIRALQEFDKIEVVGLMTMAPFTEEEAEIRHCFKKLRG 175
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ ++ + +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 LQKQVQELGLSYAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 221
>gi|34558498|ref|NP_908313.1| hypothetical protein WS2225 [Wolinella succinogenes DSM 1740]
gi|34481792|emb|CAE11213.1| conserved hypothetical protein [Wolinella succinogenes]
Length = 223
Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats.
Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 10/225 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L L ++IE + I R V +VAVSK S I+ CGQ F EN++Q+
Sbjct: 1 MNLAQNLDQAIKRIEQARIAYSR-HHIVKIVAVSKYSSSDAIQTLYECGQRAFGENRVQD 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRF 119
+K L ++ FIG+LQSNK++ ++SL ++ ++ + A L + +++
Sbjct: 60 LAQKSELLGDLP-LEWHFIGTLQSNKINALLSLKPALMHSLHSLELAKELHKRLESRNQT 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGN---PKPHFY 175
LP +Q+N+ E KSG+ P + + + + + Q+ ++G+M I + + + F
Sbjct: 119 LPALLQINSAKEESKSGVEPQKAVETYHKILEEFPQIKLQGVMTIGAHVEDRAIIQKSFE 178
Query: 176 LLSEIARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
I + K LSMGM+ DFELAIA G+ VR+GS +F
Sbjct: 179 TTQVIFEQLKPHGAEILSMGMSGDFELAIACGSNLVRLGSTLFKA 223
>gi|310828910|ref|YP_003961267.1| hypothetical protein ELI_3342 [Eubacterium limosum KIST612]
gi|308740644|gb|ADO38304.1| hypothetical protein ELI_3342 [Eubacterium limosum KIST612]
Length = 220
Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats.
Identities = 66/225 (29%), Positives = 94/225 (41%), Gaps = 24/225 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + K+ I ++V+LV V+K ++ + + G ENK+QE
Sbjct: 6 IAENIAAIKKDI----------PENVTLVGVTKHRSVEETQAVVDAGVYDLGENKVQEFL 55
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K ++ V+ FIG LQ NKV ++ +I +V + E K V
Sbjct: 56 AKVDEVKG--PVRWHFIGHLQRNKVKYLMGKVSLIHSVHSVPLLKTIEKESAKHGVKTNV 113
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLSE 179
IQ N E KSG M + + + L V+GLMCI P F L E
Sbjct: 114 LIQFNLAKEDSKSGFMAEEYEMVMKEVGNCPHLEVQGLMCIGPMTKKSDEIHKVFKHLKE 173
Query: 180 IAR---------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ K+ LSMGMT D+ +AI GAT VRIG IF
Sbjct: 174 LYDTIEKEYHGENIKMQYLSMGMTDDYPIAIEEGATIVRIGRKIF 218
>gi|225181691|ref|ZP_03735131.1| alanine racemase domain protein [Dethiobacter alkaliphilus AHT 1]
gi|225167672|gb|EEG76483.1| alanine racemase domain protein [Dethiobacter alkaliphilus AHT 1]
Length = 188
Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats.
Identities = 72/190 (37%), Positives = 100/190 (52%), Gaps = 11/190 (5%)
Query: 37 VDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV 96
V + + AL G F EN++QEA K Q FIG LQ+NK E+V F +
Sbjct: 1 VSQEVVGQALELGLNTFGENRVQEALPKVAAFP---GAQWHFIGRLQTNKAKEVVGHFAL 57
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156
+ +V R + L + +Q + IQVN G E QK GI P + +DF+ Q L
Sbjct: 58 VHSVDRWRLVQALQKQAQEQETVVRALIQVNVGGEGQKGGISPTELQDFLAETVQCKNLQ 117
Query: 157 VEGLMCIPPAMGNP---KPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSV 208
+EGLM IPP NP +P+F ++ + EC + LSMGM+ D+ +A+ GA V
Sbjct: 118 IEGLMTIPPFTENPEDARPYFREMNRLFVECSNKGFPMKYLSMGMSNDYTVAVEEGANLV 177
Query: 209 RIGSGIFGER 218
R+GS IFGER
Sbjct: 178 RVGSAIFGER 187
>gi|167381023|ref|XP_001735540.1| proline synthetase associated protein [Entamoeba dispar SAW760]
gi|165902419|gb|EDR28257.1| proline synthetase associated protein, putative [Entamoeba dispar
SAW760]
Length = 228
Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats.
Identities = 62/218 (28%), Positives = 111/218 (50%), Gaps = 11/218 (5%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQEAKKKWIPLRK-E 71
I+ L+ + + V L+AVSK + ++ + +F EN +QE +K L +
Sbjct: 10 IDKINHLSSQREKPVCLIAVSKTKPKEAVQHLYNKYNHYVFGENYIQELHEKATELEEVC 69
Query: 72 WDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
+++ FIG LQSNK+ ++ I+T+ + A L+ I ++ + V +Q+N+
Sbjct: 70 PNIEWHFIGRLQSNKLKLLISTPHLKCIQTIHSLEIAEKLNKACINANKVIDVMVQINSS 129
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR------E 183
E QK G+ + + V + L+ G+M I +G+ K +F + ++A
Sbjct: 130 GEEQKGGVSVEEALNVVKEVMKYSNLHFIGIMTIG-MVGDSKKNFTTMKQLADIICSQEH 188
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ ++SMGM+ D+ELAI GAT VR+G+ +FG R
Sbjct: 189 LESIEISMGMSSDYELAIELGATMVRVGTALFGARDYS 226
>gi|119026489|ref|YP_910334.1| hypothetical protein BAD_1471 [Bifidobacterium adolescentis ATCC
15703]
gi|118766073|dbj|BAF40252.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
Length = 272
Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats.
Identities = 67/247 (27%), Positives = 104/247 (42%), Gaps = 31/247 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 23 ITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIMAAIDAGVRMIGENRPQEVT 82
Query: 63 KKWIPLRKEW-------------------DVQLRFIGSLQSNKVSEIVSLFDVIETVSRE 103
K L + + IG LQSNK+ +++ + D IE+V
Sbjct: 83 AKAEGLARRCAERGFSLGVAGAAPDAAAEHIPFHLIGQLQSNKIGKVLPVVDTIESVDSI 142
Query: 104 KTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI 163
A +S + + + V ++VN E KSG P + ++GLM I
Sbjct: 143 DLAEKISRRAVARGITVGVLLEVNESGEESKSGCDPAHAIRIAQKIGTLDGIELQGLMTI 202
Query: 164 PPAMGNP---KPHFYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVRIG 211
+ + + F L + + +LSMGMT D ELAIA G+T VR+G
Sbjct: 203 GAHVHDETVIRRGFSHLRKTRDLILASGEPGTDRCRELSMGMTGDMELAIAEGSTIVRVG 262
Query: 212 SGIFGER 218
+ IFGER
Sbjct: 263 TAIFGER 269
>gi|332241070|ref|XP_003269712.1| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like [Nomascus leucogenys]
Length = 242
Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 69/233 (29%), Positives = 105/233 (45%), Gaps = 35/233 (15%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 11 LGVGCALRAVNERVQQA--VARRPQDLPSIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 68
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSL 111
+QE +K L +++ FIG LQ V+++ V ++ETV K A ++
Sbjct: 69 YVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKLADKVNS 128
Query: 112 EMIKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMG 168
K+ L V IQ+NT E K G+ P++T V + L GLM I
Sbjct: 129 SWQKKGSLERLKVMIQINTSGEESKHGVPPSETIAIVEHINAKCPNLEFVGLMTIGSFGH 188
Query: 169 NPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LS G DF+ I G+T+VR+GS IFGER
Sbjct: 189 D-------------------LSQGPNPDFQ--IEVGSTNVRVGSMIFGERDYS 220
>gi|21232187|ref|NP_638104.1| hypothetical protein XCC2756 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767684|ref|YP_242446.1| hypothetical protein XC_1357 [Xanthomonas campestris pv. campestris
str. 8004]
gi|21113943|gb|AAM42028.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66573016|gb|AAY48426.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 227
Score = 226 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 68/200 (34%), Positives = 92/200 (46%), Gaps = 9/200 (4%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
L+AVSK + + + GQ F EN +QEA K L+ ++ IG LQSNK
Sbjct: 25 RLLAVSKTQPADAVAGLAAQGQQAFGENYVQEAATKIAQLQA-LQLEWHLIGHLQSNKAD 83
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
FD ++TV R K +LL+ L V IQVN E K G P
Sbjct: 84 MASQCFDWVQTVDRAKLIALLARHRPDGRAPLNVLIQVNIDDEDSKHGCAPEAIDVLAAE 143
Query: 149 CRQKYQLNVEGLMCIP-PAMGNPKPH--FYLLSEIA-----RECKLTKLSMGMTRDFELA 200
L + GLM IP P + H F + + + + LSMGM+ DF A
Sbjct: 144 IATHPPLQLRGLMAIPAPFPEVTRRHQAFARMQALFATLRSQYPQADTLSMGMSADFADA 203
Query: 201 IASGATSVRIGSGIFGERPC 220
IA+GAT VR+G+ +FG+R
Sbjct: 204 IAAGATMVRVGTALFGQRNA 223
>gi|11359716|pir||T46722 conserved hypothetical protein [imported] - Leishmania major
Length = 389
Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 74/233 (31%), Positives = 107/233 (45%), Gaps = 23/233 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + + R V+L+AVSK + + GQ +F EN +QE
Sbjct: 158 TLALNYKAVCDTVAQ--ESGNRR---VTLIAVSKTKSPACLLNLYNLGQRVFGENYVQEL 212
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIK--Q 116
+K L + D FIG LQSNKV E+ V V++T+ E AS ++ K
Sbjct: 213 GEKAKELPE--DTVWHFIGHLQSNKVKELLEGVPNLRVVQTIDSENLASKVNEGCRKYRG 270
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCR-QKYQLNVEGLMCIPPAMGNPKPH- 173
R L VYIQVNT E KSG P + + L ++GLM I +P
Sbjct: 271 GRPLEVYIQVNTSGEETKSGTEPGEATVTLAKYIADECPLLQLKGLMTIGMPDYTSRPEN 330
Query: 174 FYLLSEIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L++ + +LSMGM+ D+ AI G+T+VR+G+ IFG+R
Sbjct: 331 FECLTKCREDVAQPVQMAPEDLELSMGMSGDYVNAIRMGSTAVRVGTSIFGQR 383
>gi|322690406|ref|YP_004219976.1| hypothetical protein BLLJ_0214 [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320455262|dbj|BAJ65884.1| conserved hypothetical protein [Bifidobacterium longum subsp.
longum JCM 1217]
Length = 277
Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 66/252 (26%), Positives = 104/252 (41%), Gaps = 36/252 (14%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I ++ A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 23 ITDGVHRVLDRIASAESAAGRAAGSVQLLAATKTRDVGEILAAIDAGIRVIGENRPQEIT 82
Query: 63 KKWIPLRKEW------------------------DVQLRFIGSLQSNKVSEIVSLFDVIE 98
K L K + IG LQ+NK+ +++ + D IE
Sbjct: 83 VKADGLAKRLGERGYSLGVIDAAEADTANAAAATHIPFHLIGQLQANKIGKVLPVVDTIE 142
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
+V + A ++ + + V ++VN E KSG P+ D L ++
Sbjct: 143 SVDSIELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQ 202
Query: 159 GLMCIPPAMGNPKPH---FYLLSEIAREC---------KLTKLSMGMTRDFELAIASGAT 206
GLM I + + + F L + T+LSMGMT D AI G+T
Sbjct: 203 GLMTIGAHVDDERTIRAGFAHLRRTRDQIIASGAEGTADCTELSMGMTHDMTYAIEEGST 262
Query: 207 SVRIGSGIFGER 218
VR+G+ IFGER
Sbjct: 263 IVRVGTAIFGER 274
>gi|213691153|ref|YP_002321739.1| alanine racemase domain protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|213522614|gb|ACJ51361.1| alanine racemase domain protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|320457211|dbj|BAJ67832.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 278
Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 67/253 (26%), Positives = 102/253 (40%), Gaps = 37/253 (14%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + +A R SV L+A +K D +I A+ G EN+ QE
Sbjct: 23 IADGVHRVLDRIAEAEAVAGRRSGSVRLLAATKTRDVGEILAAIDAGVRCIGENRPQEVT 82
Query: 63 KKWIPLRKEW-------------------------DVQLRFIGSLQSNKVSEIVSLFDVI 97
K L K V IG LQ+NK+ +++ D I
Sbjct: 83 VKAPGLAKRLAERGYALGVVRDAASGDDALAGAGRHVPFHLIGQLQANKIGKVLPAVDTI 142
Query: 98 ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNV 157
E+V + A ++ + + V ++VN E KSG P+ D L +
Sbjct: 143 ESVDSIELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRL 202
Query: 158 EGLMCIPPAMGNPKPH---FYLLSEIAREC---------KLTKLSMGMTRDFELAIASGA 205
+GLM I + + + F L + T+LSMGMT D AI G+
Sbjct: 203 QGLMTIGAHVDDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMAYAIEEGS 262
Query: 206 TSVRIGSGIFGER 218
T VR+G+ IFGER
Sbjct: 263 TIVRVGTAIFGER 275
>gi|315221955|ref|ZP_07863866.1| pyridoxal phosphate enzyme, YggS family [Streptococcus anginosus
F0211]
gi|315188921|gb|EFU22625.1| pyridoxal phosphate enzyme, YggS family [Streptococcus anginosus
F0211]
Length = 223
Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 56/226 (24%), Positives = 99/226 (43%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + + A R K+SV ++AV+K VDS + + G EN++ +
Sbjct: 1 MDLAKNTYQVLENVAQATQKANRSKNSVEVIAVTKYVDSSTAKELVKAGIHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ E + IG+LQ KV ++++ D + K A ++ +
Sbjct: 61 FLEKYQALKDERVI-WHLIGTLQRRKVKDVINYVDYFHALDSVKLAQEINKRAE---HII 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
++QVN E K G + + + + + GLM + P + + +
Sbjct: 117 KCFLQVNISKEASKHGFAVEEIDTILPELEKLENIQIVGLMTMAPIEADEAELNVMFQQA 176
Query: 181 AR-----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ T LSMGM+RD+ +AIA+G+T VRIG+ F
Sbjct: 177 YQLQQRLQRKQLPNMPFTDLSMGMSRDYTIAIANGSTFVRIGTAFF 222
>gi|307202202|gb|EFN81689.1| Proline synthetase co-transcribed bacterial-like protein protein
[Harpegnathos saltator]
Length = 248
Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 76/243 (31%), Positives = 115/243 (47%), Gaps = 24/243 (9%)
Query: 4 GNKLQVFKQKIENSAILAKRPKD--SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L++ +KI +A LVAVSK+ + I GQ F EN + E
Sbjct: 5 AANLKLVYEKILRAASKKASEHRYFEPRLVAVSKLQSVESILSVYKSGQTHFGENYVNEL 64
Query: 62 KKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIKQ 116
+K L+ +++ FIG+LQ NKV++I V +IETV E+ A++L+ +K
Sbjct: 65 VEKASHPQILQYGTEIKWHFIGNLQRNKVNKILNVPNLYIIETVDNERLANMLNNLWVKF 124
Query: 117 SR----FLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN-- 169
+ L + +Q+NT E +K+G + V L GLM I +
Sbjct: 125 RKNDDTKLNIMVQINTSQEKEKNGCDMVEAPALVKHIINNCPNLKFIGLMTIGMFGYDIA 184
Query: 170 --PKPHFYLLSE----IARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P P F L + I + ++ +LSMGM+ D+E AI G+TSVR+GS IFG RP
Sbjct: 185 NGPNPDFINLLKCRETICNKLEIDFKNIELSMGMSNDYEHAIELGSTSVRVGSAIFGIRP 244
Query: 220 CQT 222
+
Sbjct: 245 QKN 247
>gi|158301843|ref|XP_321478.4| AGAP001621-PA [Anopheles gambiae str. PEST]
gi|157012667|gb|EAA00912.4| AGAP001621-PA [Anopheles gambiae str. PEST]
Length = 268
Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 72/217 (33%), Positives = 105/217 (48%), Gaps = 25/217 (11%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNK 86
L+AVSK I A S GQ F EN +QE +K L D++ FIG LQSNK
Sbjct: 48 LIAVSKTKPVDLILNAYSVGQRDFGENYVQELVEKANDARILEHCQDIRWHFIGHLQSNK 107
Query: 87 VSEIVSL--FDVIETVSREKTASLLSLEMIK-------QSRFLPVYIQVNTGYEIQKSGI 137
++++++L +I+TV K A L+ K + + L V +Q+NT E +K+G+
Sbjct: 108 INKVINLPNLHMIQTVHSIKLAEGLNKAWEKVKAENAEKKQQLNVLVQINTSGEDEKNGV 167
Query: 138 MPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN----PKPHFYLLSE--------IAREC 184
P + LN EG+M I + P P F L + R+
Sbjct: 168 QPEDAVGLFRYVLDKCPNLNCEGVMTIGRFGHDYTTGPNPDFGTLMKCQQDICSTFERDP 227
Query: 185 KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++SMGM+ DF AI +G+T VR+GS IFG R +
Sbjct: 228 AELQVSMGMSDDFVQAIEAGSTIVRVGSSIFGARAKK 264
>gi|228992635|ref|ZP_04152561.1| hypothetical protein bpmyx0001_33740 [Bacillus pseudomycoides DSM
12442]
gi|228766967|gb|EEM15604.1| hypothetical protein bpmyx0001_33740 [Bacillus pseudomycoides DSM
12442]
Length = 222
Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 16/226 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +KI+ + A+R V LVAV+K V +K + G EN+ +
Sbjct: 1 MQENLAFVNEKIKIACERAERSAQEVKLVAVTKTVGIEKTNEVIEAGLTDLGENRNEGFL 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ + V FIGSLQ+ KV EI++ D + ++ R A + KQ +
Sbjct: 61 QKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRISLAKEIQRRTTKQ---VRC 115
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
++QV T E K GI +T F+ ++ ++ V GLM + P + F L
Sbjct: 116 FVQVKTSSEESKQGIAAEETIAFIRALQEFDKIEVVGLMTMAPFTEEEAEIRHCFKKLRG 175
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ ++ + +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 LQKQVQELGLSYAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 221
>gi|296412370|ref|XP_002835897.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629694|emb|CAZ80054.1| unnamed protein product [Tuber melanosporum]
Length = 264
Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 73/243 (30%), Positives = 104/243 (42%), Gaps = 30/243 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQEA 61
L LQ Q+I + A +SV LVAVSK+ + + G F EN E
Sbjct: 23 LAENLQAVLQRISSVAH----SPNSVRLVAVSKLKPATDVLAIHERTGHTHFGENYSHEL 78
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIV---SLFDVIETVSREKTASLLSLEMIKQ-- 116
+K L + FIG+LQ+NK + +E+V K A L
Sbjct: 79 LEKAASLPTA--LNWHFIGALQTNKCKHLAERIPNLWAVESVDTVKKADALEKGRAALLS 136
Query: 117 ----SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPP-----A 166
+ L VY+QVNT E KSG P + L ++GLM I
Sbjct: 137 TSPSTPKLRVYVQVNTSGEESKSGCQPTAAPVLAKHILEECKHLTLQGLMTIGAIARSRE 196
Query: 167 MGNPKPHFYLLS----EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P F L E+A+ + +LSMGM+ DFE A++ G ++VR+G+ IFG+R
Sbjct: 197 SDIPNEDFLTLKRVRDEVAQRVGIDSDQLELSMGMSEDFEQAVSLGTSNVRVGTIIFGQR 256
Query: 219 PCQ 221
P +
Sbjct: 257 PLK 259
>gi|226226802|ref|YP_002760908.1| hypothetical protein GAU_1396 [Gemmatimonas aurantiaca T-27]
gi|226089993|dbj|BAH38438.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length = 224
Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 62/224 (27%), Positives = 98/224 (43%), Gaps = 12/224 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + V+LVAV+K + A + G + ENK+QEA+
Sbjct: 4 VRETVSEVRSRIAAARSRGG-HGQEVTLVAVTKTHGPDAVEAAYAAGVLDVGENKVQEAE 62
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + V+ IG LQ NK + FD++ ++ E+ A+ L E +K +R L V
Sbjct: 63 GKMAQVA--VPVRWHLIGHLQRNKARSALR-FDLVHSMDSERLAAALHDEAVKAARSLDV 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+QVN E K G+ L V G+M + P + F
Sbjct: 120 LLQVNVSGEDSKGGVALADVPALADRLHALGTLRVRGVMTMAPFEAAEATLRTVFAGART 179
Query: 180 IARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ LSMGM+ D+E+A+ GAT VR+G+ +FG R
Sbjct: 180 ARVALQQAGHPAEWLSMGMSGDYEIAVEEGATHVRLGTVLFGSR 223
>gi|171742035|ref|ZP_02917842.1| hypothetical protein BIFDEN_01139 [Bifidobacterium dentium ATCC
27678]
gi|171277649|gb|EDT45310.1| hypothetical protein BIFDEN_01139 [Bifidobacterium dentium ATCC
27678]
Length = 319
Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 68/255 (26%), Positives = 105/255 (41%), Gaps = 39/255 (15%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + ++ + A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 62 ITDGVHRVLDRVATAEAQAGREVGSVKLLAATKTRDVGEIMTAIDAGVRMIGENRPQEVM 121
Query: 63 KKWIPLRKEW---------------------------DVQLRFIGSLQSNKVSEIVSLFD 95
K L K+ + IG LQSNK+ +++ + +
Sbjct: 122 AKAEGLLKQCAQRGFTLGAATAEAVAGGAVAGDADGTHIPFHLIGQLQSNKIGKVLPVIN 181
Query: 96 VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL 155
IE+V A +S + + + V ++VN E KSG P L
Sbjct: 182 TIESVDSVDLAEKISRRAVARGITVGVLLEVNESGEASKSGCDPAHAIRIAQKIGTLDGL 241
Query: 156 NVEGLMCIPPAMGNP---KPHFYLLSEIAREC---------KLTKLSMGMTRDFELAIAS 203
++GLM I + N + F L + + +LSMGMT D ELAIA
Sbjct: 242 ELQGLMTIGAHVDNETTIRKCFAHLRKTRDLILASKTPGTERCLELSMGMTGDMELAIAE 301
Query: 204 GATSVRIGSGIFGER 218
G+T VR+G+ IFGER
Sbjct: 302 GSTIVRVGTAIFGER 316
>gi|297603837|ref|NP_001054662.2| Os05g0150000 [Oryza sativa Japonica Group]
gi|255676024|dbj|BAF16576.2| Os05g0150000 [Oryza sativa Japonica Group]
Length = 214
Score = 226 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 66/208 (31%), Positives = 96/208 (46%), Gaps = 16/208 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + + +A + R +SV +VAVSK IR G F EN +QE K
Sbjct: 9 LRSVLSRAQQAAARSGRAPESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELIDKAS 68
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FLPV 122
L + D++ FIG+LQSNK + V D++E+V +K A+ L + R L V
Sbjct: 69 QLPE--DIEWHFIGNLQSNKARALLAGVPNLDMVESVDDQKIANRLDRVVADLGRKPLKV 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPH-FYLL--- 177
+QVNT E K G+ P+ + + L GLM I + P F L
Sbjct: 127 LVQVNTSGEESKFGVDPSGCVELAKHVKLGCPNLVFSGLMTIGMLDYSSTPENFKALANC 186
Query: 178 -SEIARECKLT----KLSMGMTRDFELA 200
E+ +E + +LSMGM+ DFE A
Sbjct: 187 RKEVCKELGIPEEQCELSMGMSADFEQA 214
>gi|121714355|ref|XP_001274788.1| alanine racemase family protein, putative [Aspergillus clavatus
NRRL 1]
gi|119402942|gb|EAW13362.1| alanine racemase family protein, putative [Aspergillus clavatus
NRRL 1]
Length = 266
Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats.
Identities = 81/254 (31%), Positives = 110/254 (43%), Gaps = 35/254 (13%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPK-DSVSLVAVSKMVDSKKIRVALS--CGQVIFAENKL 58
+L + L +I +A A R V LVAVSK+ + I + F EN L
Sbjct: 10 TLLSNLSSVTSRITTAASTAHRAPTHPVRLVAVSKLKTAADILALHNPPTNHSHFGENYL 69
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF---DVIETVSREKTASLLSL---- 111
QE +K L ++ FIG LQSNK + +E+V EK ASLL
Sbjct: 70 QELTEKSKLLP--PTIRWHFIGGLQSNKCVALARDVRGLWAVESVDSEKKASLLDKGWGE 127
Query: 112 -----EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPP 165
L V++QVNT E K+G+ P R+ +L ++G+M I
Sbjct: 128 RAAEVRATDADDRLRVFVQVNTSGEENKAGVEPAAAVALARFVREKCPRLRLQGVMTIGA 187
Query: 166 AM-------GNPKPHFYLLSE----IARECKLT------KLSMGMTRDFELAIASGATSV 208
N F L E I RE L +LSMGM+ DFE AIA G+ V
Sbjct: 188 IARSKATTPENENEDFVCLRETRDRIVRELGLQGPEAELELSMGMSEDFEGAIALGSDQV 247
Query: 209 RIGSGIFGERPCQT 222
R+G+ IFG RP ++
Sbjct: 248 RVGTTIFGHRPPKS 261
>gi|312133424|ref|YP_004000763.1| tim-barrel fold containing enzyme [Bifidobacterium longum subsp.
longum BBMN68]
gi|291517553|emb|CBK71169.1| pyridoxal phosphate enzyme, YggS family [Bifidobacterium longum
subsp. longum F8]
gi|311772653|gb|ADQ02141.1| Hypothetical TIM-Barrel fold containing enzyme [Bifidobacterium
longum subsp. longum BBMN68]
Length = 277
Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats.
Identities = 66/252 (26%), Positives = 104/252 (41%), Gaps = 36/252 (14%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I ++ A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 23 ITDGVHRVLDRIASAESAAGRAAGSVQLLAATKTRDVGEILAAIDAGIRVIGENRPQEIT 82
Query: 63 KKWIPLRKEW------------------------DVQLRFIGSLQSNKVSEIVSLFDVIE 98
K L K + IG LQ+NK+ +++ + D IE
Sbjct: 83 VKADGLAKRLGERGYSLGVIDAAEADTANAAAATHIPFHLIGQLQANKIGKVLPVVDTIE 142
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
+V + A ++ + + V ++VN E KSG P+ D L ++
Sbjct: 143 SVDSIELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQ 202
Query: 159 GLMCIPPAMGNPKPH---FYLLSEIAREC---------KLTKLSMGMTRDFELAIASGAT 206
GLM I + + + F L + T+LSMGMT D AI G+T
Sbjct: 203 GLMTIGAHVDDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMAYAIEEGST 262
Query: 207 SVRIGSGIFGER 218
VR+G+ IFGER
Sbjct: 263 IVRVGTAIFGER 274
>gi|314936650|ref|ZP_07843997.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus hominis
subsp. hominis C80]
gi|313655269|gb|EFS19014.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus hominis
subsp. hominis C80]
Length = 224
Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 107/228 (46%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ + +I + + K + +++AV+K V + + A G F EN+++
Sbjct: 1 MKVTENLEKIQAEINHHLEKSV-IKTAPNVIAVTKYVTIDRAKEAYDAGLRHFGENRVEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L K DV + FIGSLQS KV ++++ D + + R A ++ + +
Sbjct: 60 FLEKKQALPK--DVTMHFIGSLQSRKVKDVINDIDYLHALDRLSLAKEINKRA---THTI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
+IQVN E K GI ++ DF+ + + + GLM + P + F L
Sbjct: 115 SCFIQVNVSGEETKHGIALSEVNDFIEQIKAFDNIKIVGLMTMAPYTDDKDYIHQLFKQL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E K LSMGM+ D+ +A+ GAT +RIG+ + GE
Sbjct: 175 RLKRDEIKNLKLNYAPCEYLSMGMSNDYTIAVEEGATFIRIGTKLVGE 222
>gi|126649716|ref|ZP_01721952.1| hypothetical protein BB14905_16000 [Bacillus sp. B14905]
gi|126593435|gb|EAZ87380.1| hypothetical protein BB14905_16000 [Bacillus sp. B14905]
Length = 255
Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 105/225 (46%), Gaps = 16/225 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L I + R ++V ++AV+K V ++ + A+ G EN+ +
Sbjct: 25 ILANLNKLNDLIAAAETRVNREANNVQIIAVTKEVSVERTQEAIEAGLTHLGENRPEGLN 84
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K ++ V +IGSLQ+ KV ++++ D + ++ R A + +K +
Sbjct: 85 RKLSAIQAH--VNWHYIGSLQTRKVKQVINSIDYLHSLDRLSLAEEIEKRAVK---PVKC 139
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+IQVN E K G+ + FV + ++ V GLM + P + + F L +
Sbjct: 140 FIQVNVSGEESKHGLSMEEVLPFVESLKSFTKVEVVGLMTMAPNTEDEALIRTVFKQLKQ 199
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
++ T+LSMGM+ DFE+A+ GAT VR+G+ + G
Sbjct: 200 CQQQIAEQGFAHAPCTELSMGMSNDFEIAVEEGATFVRVGTALVG 244
>gi|321261900|ref|XP_003195669.1| hypothetical protein CGB_H2200W [Cryptococcus gattii WM276]
gi|317462143|gb|ADV23882.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 264
Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats.
Identities = 78/254 (30%), Positives = 113/254 (44%), Gaps = 40/254 (15%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + + + ++A A LVAVSK+ + I+ G F EN +QE
Sbjct: 16 DLKENIAAVQYDVAHAAG-AGAKP---RLVAVSKLKPASDIKALYDAGHRHFGENYIQEM 71
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEM-IKQSR 118
K L + D++ FIGSLQSNK S+ ++ +ET+S K A LL + ++
Sbjct: 72 VDKAAVLPE--DIKWHFIGSLQSNKSKLAASVPNLFILETLSSIKVADLLQKSLPPSRTS 129
Query: 119 FLPVYIQVNTGYEIQKSGIMP----------NQTKDFVIL-CRQKYQLNVEGLMCIPPAM 167
L VY+QVNT E KSG+ P + D + + L + G+M I
Sbjct: 130 KLNVYLQVNTSGEDSKSGLSPLPSSTADSKSTELVDLAVHVIEKCPGLKLLGIMTIGSWD 189
Query: 168 GN-----PKPHFYLLSEIAREC---------------KLTKLSMGMTRDFELAIASGATS 207
+ P P F L E +LSMGM+ DF AI G++S
Sbjct: 190 ASHDPTKPNPDFECLKRTRAELAKVLAEKGVPAAPREDELELSMGMSADFVQAIKEGSSS 249
Query: 208 VRIGSGIFGERPCQ 221
VR+G+ IFGERP +
Sbjct: 250 VRVGTRIFGERPKK 263
>gi|262197095|ref|YP_003268304.1| alanine racemase domain protein [Haliangium ochraceum DSM 14365]
gi|262080442|gb|ACY16411.1| alanine racemase domain protein [Haliangium ochraceum DSM 14365]
Length = 243
Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats.
Identities = 77/211 (36%), Positives = 108/211 (51%), Gaps = 10/211 (4%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE--WDVQL 76
A RP+D+ +VAVSK + + +A G V EN +QE K L E ++
Sbjct: 30 ERAGRPRDAADIVAVSKKHPAATLALAHRAGVVDVGENYVQEMLGKQDELPAEVAGALRW 89
Query: 77 RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG 136
FIG LQ NKV ++V +I V E A + +Q PV + VN G E QKSG
Sbjct: 90 HFIGHLQRNKVKQVVGRAALIHAVDSEALAREIERRAGQQDVVQPVLVAVNLGEEAQKSG 149
Query: 137 IMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFYLLSEIARECK-----LTK 188
I + + L + L +GLM +PP + +P+F L+ +ARE L +
Sbjct: 150 IARDALPALLALMDELPHLRCDGLMTMPPLAHSSEDSRPYFRALAALARELATEARPLAR 209
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
LSMG T DFE+A+ GAT VR+G+ +FG RP
Sbjct: 210 LSMGTTGDFEVALEEGATLVRVGTAVFGPRP 240
>gi|257063615|ref|YP_003143287.1| pyridoxal phosphate enzyme, YggS family [Slackia heliotrinireducens
DSM 20476]
gi|256791268|gb|ACV21938.1| pyridoxal phosphate enzyme, YggS family [Slackia heliotrinireducens
DSM 20476]
Length = 234
Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats.
Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L ++ K ++E++ A RP D+V ++ VSK V + A G F EN+ E
Sbjct: 1 MTLESRYGTIKGRVESACEQAGRPADAVRIIGVSKTVGLDSVAEATKAGIHDFGENRPDE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K E + FIG++QS ++S +V +I ++ +E A+ + ++
Sbjct: 61 LVRKHDAFPDE---RWHFIGNIQSRQLSNVVGRAYLIHSLYQESHAAKIDRLAAEKGIVQ 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM--GNPKPHFYLLS 178
V I+VN E K G+ P++ K+ V C + V+GLM + P F +L+
Sbjct: 118 DVLIEVN-DGETNKQGVDPDKVKEMVEFCEGLEHVRVKGLMIMAPIGSAEEASKTFAMLA 176
Query: 179 EIARE-----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ E +L +LSMGM+ D+ AI GAT VRIG IF
Sbjct: 177 RVRDEVVESFSQQGKDVQLGELSMGMSDDYLEAIPLGATMVRIGRAIF 224
>gi|255729862|ref|XP_002549856.1| hypothetical protein CTRG_04153 [Candida tropicalis MYA-3404]
gi|240132925|gb|EER32482.1| hypothetical protein CTRG_04153 [Candida tropicalis MYA-3404]
Length = 276
Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats.
Identities = 71/237 (29%), Positives = 105/237 (44%), Gaps = 26/237 (10%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + +I++ +V L+AVSK+ S I S G F EN +QE
Sbjct: 40 ELISNYNTVLSQIKS-------LNSNVQLIAVSKLKPSSDIMALYSIGVRHFGENYVQEL 92
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIK-QS 117
K L + D+ FIG LQS K ++ V +ET+ K L+ K
Sbjct: 93 ISKSQELPQ--DINWHFIGGLQSGKCKDLSKHVKNLYSVETIDSFKKCKQLNNSRDKIDG 150
Query: 118 RFLPVYIQVNTGYEIQKSGIM-PNQTKDFVILC--RQKYQLNVEGLMCIPPA-----MGN 169
+ VY+Q+NT E QKSG + ++ + + +L + GLM I
Sbjct: 151 DVINVYLQINTSEEEQKSGFLKIEDIQETIEYLISDECKKLKILGLMTIGSFNESVSSDG 210
Query: 170 PKPHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L EI + +L+MGM+ DFE AI G+T+VR+G+ IFG RP +
Sbjct: 211 ENKDFKKLVEIKKVLDEKYNLDLQLNMGMSNDFEQAIKQGSTNVRVGTTIFGARPPK 267
>gi|33239843|ref|NP_874785.1| TIM-barrel fold family protein [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237369|gb|AAP99437.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 207
Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats.
Identities = 68/197 (34%), Positives = 100/197 (50%), Gaps = 3/197 (1%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
+ V LVAVSK + +IR S GQV F E++LQEA K L+ V+ FIGSLQ+
Sbjct: 11 PNGVKLVAVSKGQSTSQIRSLASQGQVDFGESRLQEALPKLNSLKDLKTVRWHFIGSLQA 70
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV ++V FDVI ++ K A +S ++ + V QV + K G P+ +
Sbjct: 71 NKVRQVVKAFDVIHSIDSLKLAKRISRISAEECKKPRVMAQVKFRNDPSKFGFTPDGLLE 130
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECKLTKLSMGMTRDFELAI 201
++V GLM I P + F + + L SMGM++D++ A+
Sbjct: 131 VWNEFIALPNIDVIGLMTISPKELDLNQRKILFRECRVFSEKLGLKDCSMGMSQDWKEAV 190
Query: 202 ASGATSVRIGSGIFGER 218
GAT +R+GS +FG R
Sbjct: 191 EEGATWIRVGSLLFGGR 207
>gi|39961008|ref|XP_364647.1| hypothetical protein MGG_09492 [Magnaporthe oryzae 70-15]
gi|145010990|gb|EDJ95646.1| hypothetical protein MGG_09492 [Magnaporthe oryzae 70-15]
Length = 251
Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats.
Identities = 76/242 (31%), Positives = 105/242 (43%), Gaps = 29/242 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC--GQVIFAENKLQ 59
+L ++L+ ++++++A RP V LVAVSK+ + I S G F EN Q
Sbjct: 10 ALASQLRAVTERLQSAAK--GRP---VRLVAVSKLKPANDILALHSAPVGHTHFGENYAQ 64
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMIKQS 117
E +K L + +Q FIG LQS I + +V K A LL +
Sbjct: 65 ELSQKAQVLPR--SIQWHFIGGLQSTHCKSIAKIPNLWCVSSVDTLKKAQLLDRARGQAG 122
Query: 118 -RFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCR--QKYQLNVEGLMCIPPAM------ 167
L +++QVNT E KSG P +T + L + GLM I
Sbjct: 123 EPPLNIHVQVNTSGEESKSGCAPGEETIALCRAVASDECPNLRLLGLMTIGAIARSRATT 182
Query: 168 -GNPKPHFYLLSEIAR-------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L E +LSMGM+ DFE AI+ G+ VRIGS IFGERP
Sbjct: 183 PETENEDFVCLREQRDLVAKELALEGELELSMGMSDDFEGAISMGSHEVRIGSTIFGERP 242
Query: 220 CQ 221
+
Sbjct: 243 AK 244
>gi|159902932|ref|YP_001550276.1| TIM-barrel fold family protein [Prochlorococcus marinus str. MIT
9211]
gi|159888108|gb|ABX08322.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
str. MIT 9211]
Length = 213
Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats.
Identities = 69/201 (34%), Positives = 107/201 (53%), Gaps = 3/201 (1%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
A + + L+AVSK + +IR GQ+ F E++LQEA K+ L +++ FIG
Sbjct: 11 AGLSQLGIHLLAVSKGQPASEIRSLFIEGQIDFGESRLQEALTKFDVLNDLQEIRWHFIG 70
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
LQ+NKV +V FDVI +V K A +S ++++ + QV + +K+G +
Sbjct: 71 RLQANKVRGVVKSFDVIHSVDSIKLAKRISRIAGEENKMPLIMFQVKFRKDDKKTGFEVD 130
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIARECKLTKLSMGMTRDF 197
+ + + + GLM IPPA + K F +A + L SMGM+RD+
Sbjct: 131 ELLEAWTKLITLPNVRICGLMTIPPAGLDRHGTKNLFKECRNLADQLSLQDCSMGMSRDW 190
Query: 198 ELAIASGATSVRIGSGIFGER 218
E AI +GAT +R+GS +FGER
Sbjct: 191 EDAIEAGATWIRLGSILFGER 211
>gi|308493557|ref|XP_003108968.1| hypothetical protein CRE_11760 [Caenorhabditis remanei]
gi|308247525|gb|EFO91477.1| hypothetical protein CRE_11760 [Caenorhabditis remanei]
Length = 244
Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats.
Identities = 75/244 (30%), Positives = 111/244 (45%), Gaps = 23/244 (9%)
Query: 1 MSL---GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
MS+ L + I ++ + LVAVSK ++ I + GQ F EN
Sbjct: 1 MSIEIVQRNLLNILEAISDAVTSSS-ATQRCRLVAVSKTKPAELIESCYTQGQRHFGENY 59
Query: 58 LQEAKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMI 114
+QE ++K L K +++ FIG +QSNK+ +I + +ETV EK A L E
Sbjct: 60 VQELEEKSAVLAQKCQEIRWHFIGQVQSNKIGKICNSPGIWCVETVETEKHARLFDKEWS 119
Query: 115 KQSR---FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN- 169
K L V++QVNT E K GI ++ R + L +G M I +
Sbjct: 120 KYGATSSPLRVFVQVNTSEEENKGGIRISEAPKLAEFIRKECMNLKFDGFMTIGSFDNSH 179
Query: 170 ---PKPHFYLLSEIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P F L + ++ + +LSMGM+ DF AI G+TSVR+GS +FG R
Sbjct: 180 SSGVNPDFEKLFNVRQQWAEQIGEAAESVELSMGMSDDFLQAIHQGSTSVRVGSKLFGAR 239
Query: 219 PCQT 222
+
Sbjct: 240 EYKN 243
>gi|303321047|ref|XP_003070518.1| hypothetical protein CPC735_062460 [Coccidioides posadasii C735
delta SOWgp]
gi|240110214|gb|EER28373.1| hypothetical protein CPC735_062460 [Coccidioides posadasii C735
delta SOWgp]
gi|320036044|gb|EFW17984.1| alanine racemase [Coccidioides posadasii str. Silveira]
Length = 280
Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats.
Identities = 82/259 (31%), Positives = 116/259 (44%), Gaps = 45/259 (17%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS--CGQVIFAENKLQ 59
+L L +I +++ P SV LVAVSK+ + I + + F EN LQ
Sbjct: 21 ALLANLSSVTSRISAASV----PGSSVRLVAVSKLKPASDILALYNPPTSHLHFGENYLQ 76
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF---DVIETVSREKTASLLSLEMIKQ 116
E +K L +++ FIG LQSNK + +E+V +K A+LL ++
Sbjct: 77 ELLEKSKILP--PEIRWHFIGGLQSNKCVTLARDVRGLWAVESVDTQKKATLLDKGWGER 134
Query: 117 SR-----------------FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVE 158
+ L V++QVNT E KSG+ P+Q + R Q +L +E
Sbjct: 135 LKNHSAQQQQQEQSRAEPERLRVFVQVNTSGEESKSGVEPSQAVELCRFIREQCPRLKLE 194
Query: 159 GLMCIPPAM-------GNPKPHFYLLSE----IARECKLT-----KLSMGMTRDFELAIA 202
GLM I F L E I +E L +LSMGM+ DFE AIA
Sbjct: 195 GLMTIGAIARSKATTPETQNEDFDCLRETRDRICQELGLEGEEKLELSMGMSEDFEGAIA 254
Query: 203 SGATSVRIGSGIFGERPCQ 221
G+ VR+GS IFG RP +
Sbjct: 255 MGSNEVRVGSTIFGARPPK 273
>gi|262282739|ref|ZP_06060507.1| YggS family pyridoxal phosphate enzyme [Streptococcus sp.
2_1_36FAA]
gi|262262030|gb|EEY80728.1| YggS family pyridoxal phosphate enzyme [Streptococcus sp.
2_1_36FAA]
Length = 223
Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + A RP++SVS+VAV+K VDS + + G EN++ +
Sbjct: 1 MDLQKNKDQVFAAVAEATKKANRPENSVSIVAVTKYVDSSTAKELVKTGVNHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ E ++ IG+LQ KV E+++ D + K A + +
Sbjct: 61 FLEKYQYLKDE-ELTWHLIGTLQRRKVKEVINFVDYFHALDSLKLAEEIEKRAE---HTI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
++QVN E K G ++ + + + L + G+M + P + + F
Sbjct: 117 KCFLQVNVSGEESKHGFAVDEIEAVLPALEKLEHLEIVGIMTMAPIDAGEEDLEKIFQAT 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ ++ + +++SMGM+RDF AIA+G+T VRIG+ F
Sbjct: 177 HELQKKLQDKQITNMPFSEISMGMSRDFATAIANGSTFVRIGTSFF 222
>gi|226500772|ref|NP_001152502.1| proline synthetase-like protein [Zea mays]
gi|195656949|gb|ACG47942.1| proline synthetase-like protein [Zea mays]
Length = 245
Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats.
Identities = 72/202 (35%), Positives = 94/202 (46%), Gaps = 16/202 (7%)
Query: 35 KMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI---V 91
K +R G F+EN +QE K L + D + FIG LQSNKV + V
Sbjct: 42 KTKPVSMLRQLYDAGHRCFSENYVQEFVTKAPQLPQ--DTRWHFIGHLQSNKVKPLLAAV 99
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSR-FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
D++E V EK A+ L + R L V +QVNT E KSGI P++ D +
Sbjct: 100 PNLDMVEGVDNEKIANHLDRAVNSLGRQPLKVLVQVNTSGEESKSGIDPSKCVDLAKHVK 159
Query: 151 -QKYQLNVEGLMCIPPAMGNPKPH-FYLLS----EIARECKLT----KLSMGMTRDFELA 200
L GLM I + P F L E+ + + +LSMGM+ DFE A
Sbjct: 160 LACPHLIFSGLMTIGMKDYSSTPENFKALVNCKLEVCKALDIPTEQFELSMGMSGDFEQA 219
Query: 201 IASGATSVRIGSGIFGERPCQT 222
I G+T+VRIGS IFG R
Sbjct: 220 IEMGSTNVRIGSTIFGPREYPN 241
>gi|50304253|ref|XP_452076.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641208|emb|CAH02469.1| KLLA0B12265p [Kluyveromyces lactis]
Length = 258
Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats.
Identities = 74/237 (31%), Positives = 107/237 (45%), Gaps = 21/237 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L Q K KI +A +V L+AVSK + I++ G F EN +QE
Sbjct: 26 LIGAYQTMKDKINATAQEVGNV--NVELLAVSKYKPAADIKILYDYGVRHFGENYVQEMI 83
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQS--- 117
K L + D++ FIG LQSNK ++ + ++ +ETV K A L K +
Sbjct: 84 TKSEILPQ--DIKWHFIGGLQSNKCKDLAKIANLYSVETVDSLKKAKKLEEARGKWNPDA 141
Query: 118 RFLPVYIQVNTGYEIQKSGIMPN-QTKDFVI-LCRQKYQLNVEGLMCIPPAM-----GNP 170
+ +Q+NT E QKSG+ + V L ++ +++ GLM +
Sbjct: 142 PVITCNVQINTSGEEQKSGLFAEVEVYSIVEYLIKEAKHVSLNGLMTVGSWDVSHSGNEE 201
Query: 171 KPHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
F L E ++ KLSMGMT DF AI G + VRIG+ IFG RP +
Sbjct: 202 NQDFARLVEWKKKLDAKYGLDLKLSMGMTADFRQAIKQGTSEVRIGTAIFGSRPLKN 258
>gi|119179922|ref|XP_001241476.1| hypothetical protein CIMG_08639 [Coccidioides immitis RS]
Length = 268
Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats.
Identities = 82/259 (31%), Positives = 116/259 (44%), Gaps = 45/259 (17%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS--CGQVIFAENKLQ 59
+L L +I +++ P SV LVAVSK+ + I + + F EN LQ
Sbjct: 9 ALLANLSSVTSRISAASV----PGSSVRLVAVSKLKPASDILALYNPPTSHLHFGENYLQ 64
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF---DVIETVSREKTASLLSLEMIKQ 116
E +K L +++ FIG LQSNK + +E+V +K A+LL ++
Sbjct: 65 ELLEKSKILP--PEIRWHFIGGLQSNKCVTLARDVRGLWAVESVDTQKKATLLDKGWGER 122
Query: 117 SR-----------------FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVE 158
+ L V++QVNT E KSG+ P+Q + R Q +L +E
Sbjct: 123 LKNHSAQQQQQQQGRAEPERLRVFVQVNTSGEESKSGVEPSQAVELCRFIREQCPRLKLE 182
Query: 159 GLMCIPPAM-------GNPKPHFYLLSE----IARECKLT-----KLSMGMTRDFELAIA 202
GLM I F L E I +E L +LSMGM+ DFE AIA
Sbjct: 183 GLMTIGAIARSKATTPETQNEDFDCLRETRDRICQELGLEGEEKLELSMGMSEDFEGAIA 242
Query: 203 SGATSVRIGSGIFGERPCQ 221
G+ VR+GS IFG RP +
Sbjct: 243 MGSNEVRVGSTIFGARPPK 261
>gi|229918555|ref|YP_002887201.1| alanine racemase domain protein [Exiguobacterium sp. AT1b]
gi|229469984|gb|ACQ71756.1| alanine racemase domain protein [Exiguobacterium sp. AT1b]
Length = 217
Score = 225 bits (575), Expect = 3e-57, Method: Composition-based stats.
Identities = 59/225 (26%), Positives = 101/225 (44%), Gaps = 21/225 (9%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++ + I + +L+AV+K V + G F EN+
Sbjct: 1 MSISDNVKQVQSIISSHVQEV-----EPTLIAVTKSVGVDVANALYAEGIRDFGENRPDA 55
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K + K D + FIG+LQ+ KV +I+ I ++ R A+ + + +
Sbjct: 56 LLEKVEGMPK--DARFHFIGTLQTRKVRQIIDYVAAIHSLDRLSLAAEIDKRA---NGTI 110
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVNT E K G+ + F+ C+Q + + GLM + P + F L
Sbjct: 111 DCFVQVNTSGEDSKHGLEIEEVVPFIENCKQYPHIRIIGLMTMAPFTEEESVLRETFRRL 170
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGI 214
+ E K T+LSMGM+ D+ +AI GA+ VRIG+ +
Sbjct: 171 RHLRDEVKANAYDHAPCTELSMGMSNDYPIAIEEGASFVRIGTVL 215
>gi|317482742|ref|ZP_07941754.1| alanine racemase domain-containing protein [Bifidobacterium sp.
12_1_47BFAA]
gi|316915777|gb|EFV37187.1| alanine racemase domain-containing protein [Bifidobacterium sp.
12_1_47BFAA]
Length = 273
Score = 225 bits (574), Expect = 3e-57, Method: Composition-based stats.
Identities = 66/252 (26%), Positives = 104/252 (41%), Gaps = 36/252 (14%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I ++ A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 19 ITDGVHRVLDRIASAESAAGRAAGSVQLLAATKTRDVGEILAAIDAGIRVIGENRPQEIT 78
Query: 63 KKWIPLRKEW------------------------DVQLRFIGSLQSNKVSEIVSLFDVIE 98
K L K + IG LQ+NK+ +++ + D IE
Sbjct: 79 VKADGLAKRLGERGYSLGVIDAAEADTANAAAATHIPFHLIGQLQANKIGKVLPVVDTIE 138
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
+V + A ++ + + V ++VN E KSG P+ D L ++
Sbjct: 139 SVDSIELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQ 198
Query: 159 GLMCIPPAMGNPKPH---FYLLSEIAREC---------KLTKLSMGMTRDFELAIASGAT 206
GLM I + + + F L + T+LSMGMT D AI G+T
Sbjct: 199 GLMTIGAHVDDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMAYAIEEGST 258
Query: 207 SVRIGSGIFGER 218
VR+G+ IFGER
Sbjct: 259 IVRVGTAIFGER 270
>gi|78048625|ref|YP_364800.1| hypothetical protein XCV3069 [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325925537|ref|ZP_08186925.1| pyridoxal phosphate enzyme, YggS family [Xanthomonas perforans
91-118]
gi|78037055|emb|CAJ24794.1| conserved hypothetical protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325544041|gb|EGD15436.1| pyridoxal phosphate enzyme, YggS family [Xanthomonas perforans
91-118]
Length = 230
Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats.
Identities = 69/201 (34%), Positives = 92/201 (45%), Gaps = 9/201 (4%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V L+AVSK + + + GQ F EN +QEA K LR ++ IG LQSNK
Sbjct: 24 DVRLLAVSKTKPADAVAALAAQGQRAFGENYVQEADAKIAQLRA-LGLEWHLIGHLQSNK 82
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
FD ++TV R K LL+ L V IQVN E K G P
Sbjct: 83 AELASQCFDWVQTVDRAKLIPLLARHRPADRAPLNVLIQVNIDDEDSKHGCAPEAIDSLA 142
Query: 147 ILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIARECKL-----TKLSMGMTRDFE 198
+ +L + GLM IP P + F + + + + LSMGM+ DF
Sbjct: 143 EAIALQPRLQLRGLMAIPAPFPDQARRQAAFMRMQALFEQLQARHRQVDTLSMGMSSDFA 202
Query: 199 LAIASGATSVRIGSGIFGERP 219
AIA+GAT VR+G+ +FG R
Sbjct: 203 EAIAAGATMVRVGTALFGARD 223
>gi|152990444|ref|YP_001356166.1| hypothetical protein NIS_0695 [Nitratiruptor sp. SB155-2]
gi|151422305|dbj|BAF69809.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
Length = 225
Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats.
Identities = 56/221 (25%), Positives = 108/221 (48%), Gaps = 10/221 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + Q++E + + + V +VAV+K V +++I GQ F E+++Q+ K
Sbjct: 6 LRDNFDEIVQRVEKARME-RSEHHIVQIVAVTKYVGAEEIEALYELGQRAFGESRVQDLK 64
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLP 121
K L ++ FIG LQ NK++ ++ L + +++ + A + + ++ + +
Sbjct: 65 TKSEALGDLP-IEWHFIGRLQKNKINHLIDLDPWLMQSLDSLELAIEIDKRLERKGKKMD 123
Query: 122 VYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+Q+N+ E K+G++P +++ + + +N+ G+M I + + F
Sbjct: 124 CLLQINSAKEESKAGVLPEVAYDEYLKIIEETKHINLCGVMTIGAHTDDTTLIQKSFETT 183
Query: 178 SEIARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+I + SMGM+ DFELAI G+ VRIGS F
Sbjct: 184 YKIFESLQPHGAKICSMGMSNDFELAIRCGSNMVRIGSLFF 224
>gi|258577879|ref|XP_002543121.1| hypothetical protein UREG_02637 [Uncinocarpus reesii 1704]
gi|237903387|gb|EEP77788.1| hypothetical protein UREG_02637 [Uncinocarpus reesii 1704]
Length = 297
Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats.
Identities = 77/250 (30%), Positives = 111/250 (44%), Gaps = 37/250 (14%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS--CGQVIFAENKLQ 59
+L L +I + + V LVAVSK+ + I S + F EN LQ
Sbjct: 48 ALLANLSSVTSRISAATT-----GNPVRLVAVSKLKPASDILALHSPPTSHIHFGENYLQ 102
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF---DVIETVSREKTASLLSLEMIKQ 116
E +K L +++ FIG LQSNK + +E+V +K ASLL ++
Sbjct: 103 ELLEKSKILP--PEIRWHFIGGLQSNKCVTLARDVRGLWAVESVDTQKKASLLDKGWGER 160
Query: 117 S--------RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAM 167
S L V++QVNT E KSG+ P+ + ++ +L ++GLM I
Sbjct: 161 SNSQEGQQQEPLRVFVQVNTSGEESKSGVEPSNAVELCRFIQEKCPRLKLQGLMTIGAIA 220
Query: 168 -------GNPKPHFYLLSE----IARECKLT-----KLSMGMTRDFELAIASGATSVRIG 211
F L E + +E +LSMGM+ DFE AIA G+ VR+G
Sbjct: 221 RSKATTPETQNEDFVCLRETRDNVCQELGWEGEDKLELSMGMSEDFEGAIAMGSNEVRVG 280
Query: 212 SGIFGERPCQ 221
S IFG RP +
Sbjct: 281 STIFGARPPK 290
>gi|229162836|ref|ZP_04290793.1| hypothetical protein bcere0009_36060 [Bacillus cereus R309803]
gi|228620718|gb|EEK77587.1| hypothetical protein bcere0009_36060 [Bacillus cereus R309803]
Length = 222
Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats.
Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 16/226 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + + I+ + A R + LVAV+K V +K + G + EN+ +
Sbjct: 1 MQGNLVIVNEAIKETCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFI 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ + V FIGSLQ+ KV EI++ D + ++ R A + K+ +
Sbjct: 61 QKYEHFGSK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRADKK---VKC 115
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+IQV T E K G+ +T F+ ++ ++ V GLM + P + F L
Sbjct: 116 FIQVKTSPEESKQGLAIEETISFIQSLQELDKIEVVGLMTMAPFTEEEEEVRRCFKKLRV 175
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ E + +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 176 LQTEVQGLGLSYAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 221
>gi|290961160|ref|YP_003492342.1| hypothetical protein SCAB_68051 [Streptomyces scabiei 87.22]
gi|260650686|emb|CBG73802.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 239
Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats.
Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I + A R +D V+LV V+K + +R+ G AENK Q+A
Sbjct: 8 LAANLAKVESRIAAACAAAGRGRDEVTLVVVTKTYPADDVRILSELGVRHVAENKDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + F+G LQ+NKV +V D++++V R + + LS E ++ R +
Sbjct: 68 PKAAE-CSDLHLVWHFVGQLQTNKVRSVVRYADLVQSVDRSRLVTALSKEAVRAGREVGC 126
Query: 123 YIQVNTGYEIQ----KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPHF 174
+QV + + G+ P+ + L + L V+GLM + P G + F
Sbjct: 127 LVQVALDADASGRGERGGVGPDGIGELADLLAEAPGLRVDGLMTVAPLTGEYAGRQRAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +++ + + T +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 ERLMDLSTDLRRTHPAATMVSAGMSADLEEAVAAGATHVRVGTAVLGVRP 236
>gi|107099380|ref|ZP_01363298.1| hypothetical protein PaerPA_01000392 [Pseudomonas aeruginosa PACS2]
Length = 197
Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats.
Identities = 66/192 (34%), Positives = 82/192 (42%), Gaps = 6/192 (3%)
Query: 34 SKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL 93
SK + +R A + G F EN LQEA K L + FIG +QSNK I
Sbjct: 2 SKTKPAAAVREAHAAGLRDFGENYLQEALGKQAELADLP-LNWHFIGPIQSNKTRPIAEH 60
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY 153
F + +V R K A LS + L V +QVN E KSG P +Q
Sbjct: 61 FQWVHSVDRLKIAQRLSEQRPAGLPPLNVCLQVNVSGEASKSGCAPEDLPALAEAVKQLP 120
Query: 154 QLNVEGLMCIPPAMGNPKPHFYLLSE-----IARECKLTKLSMGMTRDFELAIASGATSV 208
L + GLM IP + + L LSMGM+ D E AI GAT V
Sbjct: 121 NLRLRGLMAIPEPTAERAAQHAAFARLRELLLDLNLGLDTLSMGMSDDLEAAIGEGATWV 180
Query: 209 RIGSGIFGERPC 220
RIG+ +FG R
Sbjct: 181 RIGTALFGARDY 192
>gi|282862154|ref|ZP_06271217.1| alanine racemase domain protein [Streptomyces sp. ACTE]
gi|282563179|gb|EFB68718.1| alanine racemase domain protein [Streptomyces sp. ACTE]
Length = 239
Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats.
Identities = 64/230 (27%), Positives = 110/230 (47%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I ++ A R +D V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAEVEDRIASACASAGRGRDEVTLIVVTKTYPASDVRILRELGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K ++ + F+G LQ+NKV +V DV+++V R K + LS +++ R L
Sbjct: 68 PKAAA-CEDLSLTWHFVGQLQTNKVRSVVGYADVVQSVDRVKLVTALSAAAVRRGRDLGC 126
Query: 123 YIQVNTGY----EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP----PAMGNPKPHF 174
+QV + G+ P+ + L ++GLM + P G + F
Sbjct: 127 LLQVALDAESGERGGRGGVAPDAIGELAAAVEDAPGLRLDGLMTVAPLAGPYAGRQRAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L E++ + +S GM+ D E A+A+GAT VR+G+ + G+RP
Sbjct: 187 DRLMELSSRLRGDHPAANMVSAGMSGDLEDAVAAGATHVRVGTAVLGDRP 236
>gi|257867503|ref|ZP_05647156.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257873832|ref|ZP_05653485.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257877582|ref|ZP_05657235.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
gi|257801559|gb|EEV30489.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257807996|gb|EEV36818.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257811748|gb|EEV40568.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
Length = 223
Score = 225 bits (574), Expect = 4e-57, Method: Composition-based stats.
Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 14/224 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +Q+I++S L R V L AV+K VD++ RV L G AEN++++
Sbjct: 2 ISENLHKIQQEIQDSCALVSRNASDVCLTAVTKSVDTETTRVLLENGVRDCAENRVEKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L+ DV+ FIG+LQ KV I++ D + K A + +
Sbjct: 62 EKKAALKDYPDVRWHFIGNLQRRKVKSIINEIDFFHALDSIKLAQEIQKRAE---HPINC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
+++VN E K GI + F+ ++ V GLM + P + + E+ R
Sbjct: 119 FVEVNVSQEATKQGIFVEEVMAFIEALASFDKIRVVGLMTMAPLTASKDEQHQIFKELKR 178
Query: 183 ------ECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ LT + SMGM+ DF +AI GAT +R+G+ +F
Sbjct: 179 IQQQIADLHLTHAPCLETSMGMSNDFPIAIQEGATFIRVGTALF 222
>gi|148984102|ref|ZP_01817397.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
gi|147923391|gb|EDK74504.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP3-BS71]
gi|301800476|emb|CBW33115.1| conserved hypothetical protein [Streptococcus pneumoniae OXC141]
Length = 223
Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSANRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ DV IG+LQ KV +++ D + K A + R +
Sbjct: 61 FLEKYEALKDR-DVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAGEIQKR---SDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K G + + + + ++ GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFSREELMEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAT 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|170065074|ref|XP_001867791.1| proline synthetase co-transcribed protein-like protein [Culex
quinquefasciatus]
gi|167882213|gb|EDS45596.1| proline synthetase co-transcribed protein-like protein [Culex
quinquefasciatus]
Length = 337
Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats.
Identities = 81/242 (33%), Positives = 114/242 (47%), Gaps = 26/242 (10%)
Query: 7 LQVFKQKIENS-AILAKRPKD-SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++ KI+ + A ++ K LVAVSK I S GQ F EN +QE +K
Sbjct: 94 IRQALAKIDEAFAKRSETIKAPKPLLVAVSKTKPVDLILDGYSIGQRDFGENYVQELIEK 153
Query: 65 WIP---LRKEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIK---- 115
L D+Q FIG LQSNK+++IV+L +IETV K A L+ K
Sbjct: 154 AHDAKILEHCKDIQWHFIGHLQSNKINKIVNLPNLYMIETVHNAKLAENLNKAWEKVKAD 213
Query: 116 --QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN--- 169
S L V IQ+NT E +K+G P + + + LN G+M I +
Sbjct: 214 KPDSSKLNVLIQINTSGEDEKNGTNPAEAVNLYRFVTEKCPNLNCHGVMTIGRFGHDYST 273
Query: 170 -PKPHFYLLSE--------IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
P P F L + ++ + ++SMGM+ DF AI G+T VR+GS IFG R
Sbjct: 274 GPNPDFIELMKCHADICSTFEKDPEEVQVSMGMSDDFVQAIEMGSTIVRVGSSIFGARAK 333
Query: 221 QT 222
+T
Sbjct: 334 KT 335
>gi|226307034|ref|YP_002766994.1| hypothetical protein RER_35470 [Rhodococcus erythropolis PR4]
gi|226186151|dbj|BAH34255.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length = 249
Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats.
Identities = 58/236 (24%), Positives = 95/236 (40%), Gaps = 18/236 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + ++ + + A R V+L+ V+K + R+ G F E++ QEA
Sbjct: 11 ISTALDSVRARLAAACLAAGREVSDVALLPVTKFFPASDARILYELGCREFGESREQEAV 70
Query: 63 KKWIPL-------RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM-- 113
+K + V+ IG LQ NK + I +V + A L
Sbjct: 71 EKVADFDGAAQSGAIDDPVRWHMIGQLQRNKARSVAKWAYAIHSVDSARLADALDRAALG 130
Query: 114 ----IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
++ L V IQV+ + + G+ + L GLM +PP +
Sbjct: 131 ALSDGERKAPLRVLIQVSLDGDPARGGVPTGELTPLAERIESAEGLEFAGLMAVPPLGSD 190
Query: 170 PKPHFYLLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
P F +L + + T+LS GMT D E A+ G+T VR+G+ + G RP
Sbjct: 191 PDEQFEILRRAHLLILESHPRATELSAGMTGDLEAAVRHGSTCVRVGTALLGSRPV 246
>gi|229816835|ref|ZP_04447117.1| hypothetical protein BIFANG_02083 [Bifidobacterium angulatum DSM
20098]
gi|229785851|gb|EEP21965.1| hypothetical protein BIFANG_02083 [Bifidobacterium angulatum DSM
20098]
Length = 286
Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats.
Identities = 70/259 (27%), Positives = 108/259 (41%), Gaps = 43/259 (16%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + ++ + A R + SV L+A +K D +I A+ G + EN+ QE +
Sbjct: 25 IAGNVHAVLDRVAAAEQAAGRKEGSVRLLAATKTRDVGEIMAAIDAGIRMIGENRPQEVQ 84
Query: 63 KKWIPLRKEWD-------------------------------VQLRFIGSLQSNKVSEIV 91
K L + + IG LQSNK+ +I+
Sbjct: 85 VKAPGLLRLAAERGFALGVGGDATADASNAAASNTAAATNGMIPFHLIGQLQSNKIGKIL 144
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
D IE+V + A ++ + + + V ++VN E KSG + D
Sbjct: 145 PFVDTIESVDSIELAEKIARRAVMRGITVGVLLEVNESGEASKSGCPASHAIDLAQRIGN 204
Query: 152 KYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAREC---------KLTKLSMGMTRDFEL 199
L ++GLM I + + + F L + + T+LSMGMT D EL
Sbjct: 205 MGGLQLQGLMTIGAHVSDETTIRAGFAHLRKTRDQILASGAPGTEHCTELSMGMTGDMEL 264
Query: 200 AIASGATSVRIGSGIFGER 218
AIA GAT VR+G+GIFGER
Sbjct: 265 AIAEGATIVRVGTGIFGER 283
>gi|224419125|ref|ZP_03657131.1| hypothetical protein HcanM9_07617 [Helicobacter canadensis MIT
98-5491]
gi|253828061|ref|ZP_04870946.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313142632|ref|ZP_07804825.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|253511467|gb|EES90126.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313131663|gb|EFR49280.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
Length = 223
Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats.
Identities = 66/222 (29%), Positives = 111/222 (50%), Gaps = 10/222 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ L +KIE + I R + V LVAVSK +++I+ CGQ F ENK+Q+
Sbjct: 3 NFKENLINAIEKIEKARIAVDRHR-IVRLVAVSKYSTTQEIQALYECGQRAFGENKVQDL 61
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD-VIETVSREKTASLLSLEMIKQSRFL 120
+K L ++ FIG+LQSNK++ ++ L + ++ + A L + ++ +L
Sbjct: 62 TQKANTLESLP-LEWHFIGNLQSNKINALLKLKPFMFHSLHSLELAKQLQKRLEQEHIYL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDF-VILCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
+Q+N+ E KSG+MP + + + + + + GLM I + + F
Sbjct: 121 KTLLQINSAKESTKSGVMPEEAIEIYYQILEECPNVKLCGLMSIGAHSTDCNLIQKSFET 180
Query: 177 LSEIARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + LSMGM+ DFELAI G+ VR+GS +F
Sbjct: 181 TRALFEKLQNFGANTLSMGMSGDFELAIRCGSNCVRLGSTLF 222
>gi|157869914|ref|XP_001683508.1| hypothetical protein [Leishmania major strain Friedlin]
gi|68126573|emb|CAJ05058.1| putative alanine racemase [Leishmania major strain Friedlin]
Length = 245
Score = 224 bits (573), Expect = 5e-57, Method: Composition-based stats.
Identities = 74/233 (31%), Positives = 108/233 (46%), Gaps = 23/233 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + + R V+L+AVSK + + GQ +F EN +QE
Sbjct: 14 TLALNYKAVCDTVAQ--ESGNRR---VTLIAVSKTKSPACLLNLYNLGQRVFGENYVQEL 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIK--Q 116
+K L + D FIG LQSNKV E+ V V++T+ E AS ++ K
Sbjct: 69 GEKAKELPE--DTVWHFIGHLQSNKVKELLEGVPNLRVVQTIDSENLASKVNEGCRKYRG 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCR-QKYQLNVEGLMCIPPAMGNPKPH- 173
R L VYIQVNT E KSG P + + L ++GLM I +P
Sbjct: 127 GRPLEVYIQVNTSGEETKSGTEPGEATVTLAKYIADECPLLQLKGLMTIGMPDYTSRPEN 186
Query: 174 FYLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L++ + + +LSMGM+ D+ AI G+T+VR+G+ IFG+R
Sbjct: 187 FECLTKCREDVAQAVQMAPEDLELSMGMSGDYVNAIRMGSTAVRVGTSIFGQR 239
>gi|182439218|ref|YP_001826937.1| hypothetical protein SGR_5425 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178467734|dbj|BAG22254.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 239
Score = 224 bits (573), Expect = 6e-57, Method: Composition-based stats.
Identities = 65/230 (28%), Positives = 110/230 (47%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I ++ A R ++ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAQVEERIASACAAAGRKREEVTLIVVTKTYPASDVRILHQLGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + F+G LQ+NKV ++ DV+++V R K + LS ++ R L
Sbjct: 68 PKATA-CADLSLTWHFVGQLQTNKVRSVIGYADVVQSVDRAKLVTALSAAAVRGERELGC 126
Query: 123 YIQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPHF 174
IQV E ++ G+ P+ + L ++GLM + P G + F
Sbjct: 127 LIQVALDAESGERGERGGVAPDGVAELAAAIGAAPGLRLDGLMTVAPLAGEFAGRQRAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L EI+ + +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 DRLMEISSRLRAGHPAANMVSAGMSGDLEDAVAAGATHVRVGTAVLGVRP 236
>gi|320011291|gb|ADW06141.1| alanine racemase domain protein [Streptomyces flavogriseus ATCC
33331]
Length = 239
Score = 224 bits (573), Expect = 6e-57, Method: Composition-based stats.
Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I ++ A R ++ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAENLAQVEERIASACASAGREREDVTLIVVTKTYPASDVRILYELGVRQVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ + F+G LQ+NKV + V+++V R K + LS ++ R L
Sbjct: 68 P-KAAACADLSLTWHFVGQLQTNKVRSVAGYAGVVQSVDRVKLVTALSAAAVRGGRELGC 126
Query: 123 YIQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP----PAMGNPKPHF 174
IQV E + G+ P+ ++ + L ++GLM + P G + F
Sbjct: 127 LIQVALDAESGERGDRGGVAPDAIEELAASVEEAEGLRLDGLMTVAPLAGPYAGRQRAAF 186
Query: 175 YLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L E + + +S GM+ D E AIA+GAT VR+G+ + G RP
Sbjct: 187 DRLVEFSSRLRGNHPAANMVSAGMSADLEDAIAAGATHVRVGTAVLGVRP 236
>gi|322688386|ref|YP_004208120.1| hypothetical protein BLIF_0195 [Bifidobacterium longum subsp.
infantis 157F]
gi|320459722|dbj|BAJ70342.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis 157F]
Length = 273
Score = 224 bits (572), Expect = 6e-57, Method: Composition-based stats.
Identities = 66/247 (26%), Positives = 101/247 (40%), Gaps = 36/247 (14%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67
+I ++ A R SV L+A +K D +I A+ G + EN+ QE K
Sbjct: 24 HRVLDRIASAESAAGRAAGSVQLLAATKTRDVGEILAAIDAGIRVIGENRPQEITVKADG 83
Query: 68 LRKEW------------------------DVQLRFIGSLQSNKVSEIVSLFDVIETVSRE 103
L K + IG LQ+NK+ +++ + D IE+V
Sbjct: 84 LAKRLGERGYSLGVIDAAEADTANAAAATHIPFHLIGQLQANKIGKVLPVVDTIESVDSI 143
Query: 104 KTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI 163
+ A ++ + + V ++VN E KSG P+ D L ++GLM I
Sbjct: 144 ELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQGLMTI 203
Query: 164 PPAMGNPKPH---FYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVRIG 211
+ + + F L + T+LSMGMT D AI G+T VR+G
Sbjct: 204 GAHVDDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMTYAIEEGSTIVRVG 263
Query: 212 SGIFGER 218
+ IFGER
Sbjct: 264 TAIFGER 270
>gi|309801688|ref|ZP_07695808.1| pyridoxal phosphate enzyme, YggS family [Bifidobacterium dentium
JCVIHMP022]
gi|308221630|gb|EFO77922.1| pyridoxal phosphate enzyme, YggS family [Bifidobacterium dentium
JCVIHMP022]
Length = 276
Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats.
Identities = 66/255 (25%), Positives = 103/255 (40%), Gaps = 39/255 (15%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + ++ + A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 19 ITDGVHRVLDRVATAEAQAGREVGSVKLLAATKTRDVGEIMTAIDAGVRMIGENRPQEVT 78
Query: 63 KKWIPL---------------------------RKEWDVQLRFIGSLQSNKVSEIVSLFD 95
K L + IG LQSNK+ +++ + +
Sbjct: 79 AKAEGLLKQCAQRGFTLGAATAEVVAGGAVAGDADGTHIPFHLIGQLQSNKIGKVLPVVN 138
Query: 96 VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL 155
IE+V A +S + + + V ++VN E KSG P L
Sbjct: 139 TIESVDSVDLAEKISRRAVARGITVGVLLEVNESGEASKSGCDPAHAIRIAQKIGTLDGL 198
Query: 156 NVEGLMCIPPAMGNP---KPHFYLLSEIAREC---------KLTKLSMGMTRDFELAIAS 203
++GLM I + + + F L + + +LSMGMT D ELAIA
Sbjct: 199 ELQGLMTIGAHVDDETTIRKCFAHLRKTRDLILASKTPGTERCLELSMGMTGDMELAIAE 258
Query: 204 GATSVRIGSGIFGER 218
G+T VR+G+ IFGER
Sbjct: 259 GSTIVRVGTAIFGER 273
>gi|126138400|ref|XP_001385723.1| hypothetical protein PICST_48387 [Scheffersomyces stipitis CBS
6054]
gi|126093001|gb|ABN67694.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 250
Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats.
Identities = 72/238 (30%), Positives = 106/238 (44%), Gaps = 23/238 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +++++ A V LVAVSK+ S I + G F EN +QE
Sbjct: 16 LVANYNTVLEQVQSLAKKHSNVP--VRLVAVSKLKPSGDIMALYNAGVRHFGENYVQELI 73
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD---VIETVSREKTASLLSLEMIK-QSR 118
K L K D++ FIG +QS K ++ + +ET+ K L +
Sbjct: 74 GKSKELPK--DIKWHFIGGMQSGKAKDLAKGVESLFAVETIDALKKCKQLDNTRSRLDGA 131
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-----RQKYQLNVEGLMCIPPA-----MG 168
+ VY+Q+NT E QKSG + + + +L + GLM I G
Sbjct: 132 PIEVYLQINTSEEDQKSGYSLSNLTELYETIDYILSDECKKLKLGGLMTIGSFAESHTDG 191
Query: 169 NPKPHFYLLSEIAR----ECKLT-KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L + + + KL +LSMGM+ DFE AI G+TSVR+G+ IFG RP +
Sbjct: 192 EENEDFSKLVNLKKIVDEKYKLNLQLSMGMSSDFEQAIKQGSTSVRVGTSIFGARPPR 249
>gi|302546154|ref|ZP_07298496.1| YggS family pyridoxal phosphate enzyme [Streptomyces hygroscopicus
ATCC 53653]
gi|302463772|gb|EFL26865.1| YggS family pyridoxal phosphate enzyme [Streptomyces himastatinicus
ATCC 53653]
Length = 239
Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats.
Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R ++ V+L+ V+K + +R+ G AEN+ QEA
Sbjct: 8 LAANLATVEERISAACAAAGRKREEVTLIVVTKTYPASDVRLLAELGVRHVAENRDQEAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + F+G LQ+NKV + S DV+++V R++ LS + +R L V
Sbjct: 68 PKAAECADLPLI-WHFVGQLQTNKVRSVCSYADVVQSVDRKRLVDALSGAAVGAARELGV 126
Query: 123 YIQ----VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP----PAMGNPKPHF 174
IQ V++G Q+ G+ P+ L ++GLM + P P+ F
Sbjct: 127 LIQVALDVDSGERGQRGGVGPDGVGALAEAVAAADGLRLDGLMTVAPLAGPYADQPRAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L EI+ ++ +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 GRLMEISSGLRVAHPAANMVSAGMSSDLEEAVAAGATHVRVGTAVLGVRP 236
>gi|257468458|ref|ZP_05632552.1| proline synthetase associated protein [Fusobacterium ulcerans ATCC
49185]
gi|317062721|ref|ZP_07927206.1| proline synthetase associated protein [Fusobacterium ulcerans ATCC
49185]
gi|313688397|gb|EFS25232.1| proline synthetase associated protein [Fusobacterium ulcerans ATCC
49185]
Length = 225
Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats.
Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 16/226 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + ++ I+ ++ + +AV+K V +++ + CG +F ENK Q
Sbjct: 3 DIKKNISEIEEDIKKHSL----NPEKSRFIAVTKYVGPEEMLPIIDCGVKVFGENKAQVM 58
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K + DV+ FIG+LQ NKV I +I +V++ A + + +R
Sbjct: 59 KDKQEKFNEMGIKDVEWHFIGNLQKNKVKYIAEYVKMIHSVNKLSLAQEIDKRAEQYNRV 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ V +++N E K G + + + +N+ GLM + P + + + F
Sbjct: 119 IDVLLEINIAGEESKEGYDLEELYKELPQLMELKNINIIGLMTMAPFVEDEELLRSVFKR 178
Query: 177 LSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L EI E KL +LSMGMT D+++A+ GAT +R+G IF
Sbjct: 179 LREIKDELNEKWFKGKLVELSMGMTNDYKIALEEGATLIRVGRKIF 224
>gi|167626952|ref|YP_001677452.1| hypothetical protein Fphi_0729 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167596953|gb|ABZ86951.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 222
Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats.
Identities = 72/203 (35%), Positives = 108/203 (53%), Gaps = 14/203 (6%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
L+AVSK KI S GQ+ F EN QE ++K L +++ FIGSLQS K+
Sbjct: 23 RLLAVSKYQSIDKIEYLASLGQLDFGENYFQELEQKAQQLP---NLKWHFIGSLQSRKIK 79
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
IV D I++V + + +S I +++++ V++Q+N ++ KSG Q D +
Sbjct: 80 HIVKYADSIQSVEKIEHLEKISKAAINENKYIDVFLQINIDDDVSKSGFKSTQLDDVIEA 139
Query: 149 C---RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR--------ECKLTKLSMGMTRDF 197
++ L V GLMCIP +P+ F + E KL++LSMGM+ D+
Sbjct: 140 IVKAKKFSNLKVVGLMCIPAKSDSPEKSFAKMKVFFDTINASLAYELKLSRLSMGMSADY 199
Query: 198 ELAIASGATSVRIGSGIFGERPC 220
+LAI G+T VRIGS +FG R
Sbjct: 200 KLAIQYGSTDVRIGSSLFGIREA 222
>gi|256827363|ref|YP_003151322.1| pyridoxal phosphate enzyme, YggS family [Cryptobacterium curtum DSM
15641]
gi|256583506|gb|ACU94640.1| pyridoxal phosphate enzyme, YggS family [Cryptobacterium curtum DSM
15641]
Length = 230
Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats.
Identities = 62/227 (27%), Positives = 100/227 (44%), Gaps = 15/227 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + + ++ AI A R +V L+AVSK V + A+ G F EN+ +
Sbjct: 1 MTIAERYRALADEVAREAIRAGRDSQAVKLIAVSKTVGPDAVAEAIHAGAQAFGENRPDQ 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + + FIG++QS ++ +IV +I +V E + + +
Sbjct: 61 IMDKQPRFPE---AEWHFIGNIQSRRIKDIVPHATLIHSVFEESHLARIDHAAAAIDKVQ 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG--NPKPHFYLLS 178
+ I+VN E K G P+ + CR + V GLM + P + F L+
Sbjct: 118 DILIEVNVSGEASKGGAAPDDVASLIDACRNLSHIRVRGLMTMAPQGDLQVAEETFVHLA 177
Query: 179 EIAREC----------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + L++LSMGM+ D+ AI GAT VRIG IF
Sbjct: 178 ALKNKLVASLDADMAAHLSELSMGMSEDWRCAIKQGATMVRIGRAIF 224
>gi|169351607|ref|ZP_02868545.1| hypothetical protein CLOSPI_02387 [Clostridium spiroforme DSM 1552]
gi|169291829|gb|EDS73962.1| hypothetical protein CLOSPI_02387 [Clostridium spiroforme DSM 1552]
Length = 220
Score = 224 bits (572), Expect = 7e-57, Method: Composition-based stats.
Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 11/199 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ V L+A +K V +I + G + F EN++Q +K+ + + + IG+LQ N
Sbjct: 23 NDVKLIAATKYVGIDEINKLENLGVMYFGENRVQAFLEKYQ--KYNGNCKFHMIGTLQPN 80
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV I+ D+I +V + + K + + V IQVN E K G + ++
Sbjct: 81 KVKYIIDKVDLIHSVDSYSLIKEIEKQANKHNLVMKVLIQVNISKEESKHGFKVEEIEEV 140
Query: 146 VILCRQKYQLNVEGLMCIPPA--MGNPKPHFYLLSEIARECK-------LTKLSMGMTRD 196
+ + V+GLM + P + +F L ++ + K LT+LSMGM+ D
Sbjct: 141 FDTLKNYPHIEVKGLMMMAPNIEAEKTREYFKLTQDLFNQLKIKYPEYSLTELSMGMSND 200
Query: 197 FELAIASGATSVRIGSGIF 215
+++A+ GAT VRIGS +F
Sbjct: 201 YKIALEYGATMVRIGSSLF 219
>gi|296140337|ref|YP_003647580.1| alanine racemase domain protein [Tsukamurella paurometabola DSM
20162]
gi|296028471|gb|ADG79241.1| alanine racemase domain protein [Tsukamurella paurometabola DSM
20162]
Length = 236
Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats.
Identities = 53/228 (23%), Positives = 96/228 (42%), Gaps = 14/228 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +++ + A R + V+L+ V+K + I + G F EN+ +
Sbjct: 7 LAEGLAATRSRLDAACRAAGRDRTEVALLPVTKFFPASDIALLQELGCTDFGENR---EQ 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL------EMIKQ 116
+ + +L +G +Q NK + ++ ++ + A L E +
Sbjct: 64 EAAAKAAELTGARLHMLGHIQRNKAKSVARWAAMVHSLDSIRLAGALERSTEAALEAGVR 123
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ L V IQ++ + + G+ V Q L + G+M +PP +P+ F
Sbjct: 124 AAPLDVLIQISLDGDPARGGVTRADLAALVETVAQSPSLRLRGVMGVPPLEADPERAFTE 183
Query: 177 LSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L+E+ S GM+ D ELA+ G+T VR+G+ I G RP
Sbjct: 184 LAELWTDVRRDHPDADVFSAGMSGDLELAVKLGSTCVRVGTAILGRRP 231
>gi|157150424|ref|YP_001449979.1| hypothetical protein SGO_0676 [Streptococcus gordonii str. Challis
substr. CH1]
gi|157075218|gb|ABV09901.1| conserved hypothetical protein TIGR00044 [Streptococcus gordonii
str. Challis substr. CH1]
Length = 223
Score = 224 bits (571), Expect = 8e-57, Method: Composition-based stats.
Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + A RP++SVS+VAV+K VDS + + G EN++ +
Sbjct: 1 MDLQKNKYQVFAAVAEATRKANRPENSVSIVAVTKYVDSSTAKELVKTGVKHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ LR E ++ IG+LQ KV E+++ D + K A + +
Sbjct: 61 FLEKYQYLRDE-ELTWHLIGTLQRRKVKEVINYVDYFHALDSLKLAEEIEKRAE---HTI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
++QVN E K G N+ + + + + + G+M + P + + F
Sbjct: 117 KCFLQVNVSGEESKHGFAVNEIEAVLPALEKLEHIEIVGIMTMAPIDAGEEDLEKIFQAT 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ ++ + +++SMGM+RDF AIA+G+T VRIG+ F
Sbjct: 177 HELQKKLQNKQITNMPFSEISMGMSRDFATAIANGSTFVRIGTSFF 222
>gi|283456835|ref|YP_003361399.1| hypothetical protein BDP_2003 [Bifidobacterium dentium Bd1]
gi|283103469|gb|ADB10575.1| Conserved hypothetical protein with alanine racemase, N-terminal
domain [Bifidobacterium dentium Bd1]
Length = 280
Score = 224 bits (571), Expect = 9e-57, Method: Composition-based stats.
Identities = 68/255 (26%), Positives = 105/255 (41%), Gaps = 39/255 (15%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + ++ + A R SV L+A +K D +I A+ G + EN+ QE
Sbjct: 23 ITDGVHRVLDRVATAEAQAGREVGSVKLLAATKTRDVGEIMTAIDAGVRMIGENRPQEVM 82
Query: 63 KKWIPLRKEW---------------------------DVQLRFIGSLQSNKVSEIVSLFD 95
K L K+ + IG LQSNK+ +++ + +
Sbjct: 83 AKAEGLLKQCAQRGFTLGAATAEAVAGGAVAGDADGTHIPFHLIGQLQSNKIGKVLPVIN 142
Query: 96 VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL 155
IE+V A +S + + + V ++VN E KSG P L
Sbjct: 143 TIESVDSVDLAEKISRRAVARGITVGVLLEVNESGEASKSGCDPAHAIRIAQKIGTLDGL 202
Query: 156 NVEGLMCIPPAMGNP---KPHFYLLSEIAREC---------KLTKLSMGMTRDFELAIAS 203
++GLM I + N + F L + + +LSMGMT D ELAIA
Sbjct: 203 ELQGLMTIGAHVDNETTIRKCFAHLRKTRDLILASKTPGTERCLELSMGMTGDMELAIAE 262
Query: 204 GATSVRIGSGIFGER 218
G+T VR+G+ IFGER
Sbjct: 263 GSTIVRVGTAIFGER 277
>gi|154488149|ref|ZP_02029266.1| hypothetical protein BIFADO_01720 [Bifidobacterium adolescentis
L2-32]
gi|154083622|gb|EDN82667.1| hypothetical protein BIFADO_01720 [Bifidobacterium adolescentis
L2-32]
Length = 272
Score = 224 bits (571), Expect = 9e-57, Method: Composition-based stats.
Identities = 68/247 (27%), Positives = 104/247 (42%), Gaps = 31/247 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + A R SV L+A +K D +I VA+ G + EN+ QE
Sbjct: 23 ITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIMVAIDAGVRMIGENRPQEVT 82
Query: 63 KKW-------------------IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSRE 103
K P + IG LQSNK+ +++ + D IE+V
Sbjct: 83 AKAKGLARRCAERGFSLGVAGVAPDAAAEHIPFHLIGQLQSNKIGKVLPVVDTIESVDSI 142
Query: 104 KTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI 163
A +S + + + V ++VN E KSG P + ++GLM I
Sbjct: 143 DLAEKISRRAVARGITVGVLLEVNESGEESKSGCDPAHAIRIAQKIGTLDGIELQGLMTI 202
Query: 164 PPAMGNP---KPHFYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVRIG 211
+ + + F L + + +LSMGMT D ELAIA G+T VR+G
Sbjct: 203 GAHVHDETVIRRGFSHLRKTRDLILASGEPGTDRCRELSMGMTGDMELAIAEGSTIVRVG 262
Query: 212 SGIFGER 218
+ IFGER
Sbjct: 263 TAIFGER 269
>gi|310778064|ref|YP_003966397.1| alanine racemase domain protein [Ilyobacter polytropus DSM 2926]
gi|309747387|gb|ADO82049.1| alanine racemase domain protein [Ilyobacter polytropus DSM 2926]
Length = 226
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 61/227 (26%), Positives = 106/227 (46%), Gaps = 17/227 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ N +Q + I + V LVAV+K V ++++ L+ G I EN++Q
Sbjct: 3 SIKNNIQEISEDI----KKYSPCPEKVKLVAVTKYVGTEEMTDVLASGVNIVGENRVQVL 58
Query: 62 KKKWIPLRKE---WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
K K + ++ FIG+LQ NKV I ++I +V++ A ++ R
Sbjct: 59 KDKKEKFDQSELGSKIKWHFIGNLQKNKVKYISDYIELIHSVNKLSLAKEINKRAEATDR 118
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFY 175
+ V +++N E K G + + + + V GLM + P + + F
Sbjct: 119 IIEVLLEINIAGEESKEGYKIEKLYKELPEILKLKNIKVTGLMTMAPFTEDTDLVRRIFR 178
Query: 176 LLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L ++ + +L +LSMGM+ D+++A+ GAT +RIGS IF
Sbjct: 179 ELRKLKDDLSRDYFQGELKELSMGMSGDYKIALEEGATLIRIGSKIF 225
>gi|111221636|ref|YP_712430.1| PLP-binding domain-containing protein [Frankia alni ACN14a]
gi|111149168|emb|CAJ60851.1| putative enzyme with PLP-binding domain [Frankia alni ACN14a]
Length = 303
Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats.
Identities = 69/268 (25%), Positives = 113/268 (42%), Gaps = 51/268 (19%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L V +++I +A A R ++L+AVSK + + + + G FAEN+ QEA
Sbjct: 33 LARRLSVIEERIATAARTAGRDPAGLTLIAVSKTYPAADVVMLHTLGARQFAENREQEAG 92
Query: 63 KKW---------------------------------IPLRKEWDVQLRFIGSLQSNKVSE 89
K P E +V F+G LQ NK
Sbjct: 93 PKVTMVTRELAQVSGDPSAGGGDGLAGAGVAPGAAADPAPGEPNVIWHFVGQLQRNKARS 152
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG-------------YEIQKSG 136
++ D +++V R +LS +++ R L + +QV+ + + G
Sbjct: 153 VLRWADWVQSVDRSALVGVLSRLAVERGRPLSICLQVSLDSRSDSRGRVGSVVADSGRGG 212
Query: 137 IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC-----KLTKLSM 191
+ P + L + L + G+M + P +P F L +A + T +S
Sbjct: 213 VDPGELPALADLVDEAPGLTLRGVMAVAPRGEPARPAFERLRAVAERLVVDHPQATVISA 272
Query: 192 GMTRDFELAIASGATSVRIGSGIFGERP 219
GM+ D E A+A GAT +RIG+ +FGERP
Sbjct: 273 GMSSDLEAAVAEGATHLRIGTALFGERP 300
>gi|159038975|ref|YP_001538228.1| alanine racemase domain-containing protein [Salinispora arenicola
CNS-205]
gi|157917810|gb|ABV99237.1| alanine racemase domain protein [Salinispora arenicola CNS-205]
Length = 248
Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats.
Identities = 66/229 (28%), Positives = 102/229 (44%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + ++ ++ A R VS+VAV+K + + + G EN+ QEA
Sbjct: 16 LAAGLTRVRTRVADACAAAGRDLGEVSMVAVTKTYPASDVIALVGLGATEVGENRDQEAS 75
Query: 63 KKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE-MIKQSRFL 120
K + + FIG LQ NK +V DV+++V + A L + R L
Sbjct: 76 AKATEVAAAGVTPRWHFIGQLQRNKARSVVRYADVVQSVDSVRLARALDRASATVRDRPL 135
Query: 121 PVYIQVNTGYEIQKSGIMP------NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
V++QV+ + G +P + + L + GLM + P P+ F
Sbjct: 136 EVFVQVSIDGAGARGGALPGSADPEAGLEPVAEMVAGMDGLRLAGLMAVAPLGWEPERAF 195
Query: 175 YLLSEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+E+A R + T LS GM+ D E+AI GAT VR+GS + G R
Sbjct: 196 ARLAEVAAGFRVRHPQATLLSAGMSGDLEVAIRYGATHVRVGSALLGMR 244
>gi|224282377|ref|ZP_03645699.1| hypothetical protein BbifN4_00962 [Bifidobacterium bifidum NCIMB
41171]
gi|313139521|ref|ZP_07801714.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|313132031|gb|EFR49648.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
Length = 275
Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats.
Identities = 69/249 (27%), Positives = 102/249 (40%), Gaps = 33/249 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + I + A SV L+A +K D +I A+ G + EN+ QE
Sbjct: 24 IRDGVHRVLDAIAEAESAAGCAPGSVKLLAATKTRDVGEIMAAIDAGIRMIGENRPQEVM 83
Query: 63 KKWIPLR---------------------KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVS 101
K LR + IG LQ+NK+ +I+ + IE+V
Sbjct: 84 AKAEGLRRLCADRGFALGTGDGDTTRPSDAEHIPFHLIGQLQANKIGKILPDVNTIESVD 143
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161
+ A ++ + + + V ++VN E KSG P D Q + +EGLM
Sbjct: 144 GVELAQRIARRAVARGITVGVLLEVNESGEASKSGCDPQAAVDIAAQIAQLDGIRLEGLM 203
Query: 162 CIPPAMGNP---KPHFYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVR 209
I + + + F L T+LSMGMT D LAIA GAT VR
Sbjct: 204 TIGAHVDDEATIRACFAHLRGTRDTILASRAPGTEHCTELSMGMTHDMALAIAEGATIVR 263
Query: 210 IGSGIFGER 218
+G+ IFGER
Sbjct: 264 VGTAIFGER 272
>gi|70982173|ref|XP_746615.1| alanine racemase family protein [Aspergillus fumigatus Af293]
gi|66844238|gb|EAL84577.1| alanine racemase family protein, putative [Aspergillus fumigatus
Af293]
gi|159122150|gb|EDP47272.1| alanine racemase family protein, putative [Aspergillus fumigatus
A1163]
Length = 286
Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats.
Identities = 80/255 (31%), Positives = 114/255 (44%), Gaps = 36/255 (14%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPK-DSVSLVAVSKMVDSKKIRVALS--CGQVIFAENKL 58
+L L +I +A+ A RP + L+AVSK+ + I + + F EN L
Sbjct: 29 TLLANLSSVTSRISTAALNANRPATKPIRLIAVSKLKPAADILALHNPPTNHLHFGENYL 88
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF---DVIETVSREKTASLLSLEMIK 115
QE +K L ++ FIG LQSNK + +E+V EK ASLL +
Sbjct: 89 QELLEKSKLLP--PSIRWHFIGGLQSNKCVTLARDVRGLWAVESVDSEKKASLLDRGWGE 146
Query: 116 QSR---------FLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQ-KYQLNVEGLMCIP 164
+S L V++QVNT E K+G+ P R+ +L ++G+M I
Sbjct: 147 RSEEVRGVALEDRLRVFVQVNTSGEENKAGVDPVAGAVPLARFIREKCPRLKLQGVMTIG 206
Query: 165 PAM-------GNPKPHFYLLSE----IARECKLT------KLSMGMTRDFELAIASGATS 207
F L E I RE L +LSMGM+ DFE AI G+
Sbjct: 207 AIARSKATTPETENEDFVCLRETRDRIVRELGLQGDDAELELSMGMSEDFEGAIKLGSDE 266
Query: 208 VRIGSGIFGERPCQT 222
VR+G+ IFGERP ++
Sbjct: 267 VRVGTTIFGERPPKS 281
>gi|238795052|ref|ZP_04638645.1| alanine racemase [Yersinia intermedia ATCC 29909]
gi|238725600|gb|EEQ17161.1| alanine racemase [Yersinia intermedia ATCC 29909]
Length = 192
Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats.
Identities = 62/190 (32%), Positives = 86/190 (45%), Gaps = 11/190 (5%)
Query: 40 KKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDV 96
I A++ GQ F EN +QE K D++ FIG LQSNK + F
Sbjct: 2 SAIEEAIAAGQYAFGENYVQEGVDKIHYFANNAHSTDLEWHFIGPLQSNKSRLVAENFAW 61
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156
TV R K A LS + L + IQVN E KSGI + + L+
Sbjct: 62 CHTVDRLKIAQRLSTQRPAAMAALNILIQVNISDEQSKSGIALTELPALAASISELPNLS 121
Query: 157 VEGLMCIPPAMGNPKPHFYLLSEIAR--------ECKLTKLSMGMTRDFELAIASGATSV 208
+ GLM IP + + + ++ + ++ LSMGMT D AI++G+T V
Sbjct: 122 LRGLMAIPAPESDYQRQLVVFEQMNQAFLTLKASYPQIDTLSMGMTDDMAAAISAGSTLV 181
Query: 209 RIGSGIFGER 218
RIG+ IFG R
Sbjct: 182 RIGTAIFGTR 191
>gi|312220182|emb|CBY00124.1| hypothetical protein [Leptosphaeria maculans]
Length = 770
Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats.
Identities = 72/247 (29%), Positives = 97/247 (39%), Gaps = 34/247 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCG---QVIFAENKLQ 59
L + +I+ + V L+AVSK+ + I Q F EN +Q
Sbjct: 516 LAENIAGISSRID-AVSKGG---KQVRLIAVSKLKPANDILALHQPPNPIQTHFGENYVQ 571
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV---SLFDVIETVSREKTASLLSLEMIKQ 116
E +K L + +Q IG LQSNK + + +V EK A+ L
Sbjct: 572 ELLEKAKLLPR--SIQWHMIGGLQSNKCKALAEQIPNLWCVSSVDTEKKANELEKGRKAL 629
Query: 117 ------SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAM-- 167
+ L + IQVNT E KSG+ P T L + GLM I
Sbjct: 630 LDHDPSAPKLRIKIQVNTSGEASKSGVEPAHTLALCTHVLEHCPHLQLSGLMTIGAIARS 689
Query: 168 -----GNPKPHFYLLSE----IARECKLT----KLSMGMTRDFELAIASGATSVRIGSGI 214
F L E +A +LSMGM+ DFE AI G+ VR+GS I
Sbjct: 690 KATTPETENEDFVALRETRNRVAEALGWEQDRLELSMGMSADFEGAIRHGSDEVRVGSQI 749
Query: 215 FGERPCQ 221
FGERP +
Sbjct: 750 FGERPPK 756
>gi|306824768|ref|ZP_07458112.1| YggS family pyridoxal phosphate enzyme [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|304432979|gb|EFM35951.1| YggS family pyridoxal phosphate enzyme [Streptococcus sp. oral
taxon 071 str. 73H25AP]
Length = 223
Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats.
Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L ++ Q+I +++ A R D+VS++AV+K VD + L G EN++ E
Sbjct: 1 MNLKKNTELVFQQIADASQKANRNLDAVSVIAVTKYVDVQTAEALLPLGIHHIGENRVDE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L K++ V IG+LQ KV E++ D + K A + +
Sbjct: 61 FLEKYQAL-KDYPVTWHLIGTLQRRKVKEVIPYVDYFHALDSLKLAQEIQKR---TDHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
++QVN E K G + + + + Q+ GLM + P K F
Sbjct: 117 KCFLQVNISGEESKHGFSKEELLELLPELAKLDQIEYVGLMTMAPFEAGSDELKEIFKDT 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ E + +T+LSMGM+RDF+ AI G+T VRIG+ F
Sbjct: 177 QALQAEIREKQIPNMPMTELSMGMSRDFKEAIQFGSTFVRIGTAFF 222
>gi|284991679|ref|YP_003410233.1| alanine racemase domain-containing protein [Geodermatophilus
obscurus DSM 43160]
gi|284064924|gb|ADB75862.1| alanine racemase domain protein [Geodermatophilus obscurus DSM
43160]
Length = 246
Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats.
Identities = 62/205 (30%), Positives = 98/205 (47%), Gaps = 10/205 (4%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
V L+AVSK + +R + GQ F EN+ QE K L ++ FIG LQ NK
Sbjct: 28 EVRLLAVSKTWPADAVRELAALGQADFGENRAQELTGKAAELADLP-LRWHFIGQLQRNK 86
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI----QKSGIMPNQT 142
+ + L V+ +V R A L+ ++ R + V++QV+ G + G P +
Sbjct: 87 AAAVARLGAVVHSVDRLSLARALARVGVETGRPVEVFLQVDLGGPEGELAARGGADPAEV 146
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK-----LSMGMTRDF 197
+ L + GLM + P P P F L+ +A+ + LS GM+ D
Sbjct: 147 PALADAVAAEEGLALRGLMAVAPRGAAPGPAFGRLAALAQRVRADHPEALDLSAGMSADL 206
Query: 198 ELAIASGATSVRIGSGIFGERPCQT 222
E A+A+G+T +R+G+ +FG RP +
Sbjct: 207 EEAVAAGSTLLRVGTALFGTRPLAS 231
>gi|227545702|ref|ZP_03975751.1| possible TIM-barrel fold protein [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|227213818|gb|EEI81657.1| possible TIM-barrel fold protein [Bifidobacterium longum subsp.
infantis ATCC 55813]
Length = 292
Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats.
Identities = 66/250 (26%), Positives = 104/250 (41%), Gaps = 34/250 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + +A R SV L+A +K D +I A+ G EN+ QE
Sbjct: 40 ITDGVHRVLDRIAEAESVAGREAGSVHLLAATKTRDVGEILAAIDAGVHRIGENRPQEII 99
Query: 63 KKWIPLRKEW----------------------DVQLRFIGSLQSNKVSEIVSLFDVIETV 100
K L + + IG LQ+NK+S+++ + D IE+V
Sbjct: 100 VKAPGLARLLAERGYSLGVVETEGGAAADAAHHIPFHLIGQLQANKISKVLPVVDTIESV 159
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ A ++ + + V ++VN E KSG P+ D L ++GL
Sbjct: 160 DSIELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQGL 219
Query: 161 MCIPPAMGNPKPH---FYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSV 208
M I + + + F L + T+LSMGMT D AI G+T V
Sbjct: 220 MTIGAHVDDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMTYAIEEGSTIV 279
Query: 209 RIGSGIFGER 218
R+G+ IFGER
Sbjct: 280 RVGTAIFGER 289
>gi|73662892|ref|YP_301673.1| hypothetical protein SSP1583 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495407|dbj|BAE18728.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 224
Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats.
Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ ++IE ++AV+K V + A + G F EN+L+
Sbjct: 1 MDVQYNLEKINEQIEAHCKK-GNITTKPDVIAVTKYVTIDRANDAYNVGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
++K L DV + FIGSLQ+ KV ++++ D + R K A ++ +
Sbjct: 60 FQQKKAALPD--DVVMHFIGSLQTRKVKDVINEIDYFHALDRLKLAKEINKRAE---HKI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K G+ ++ + F+ +Q + + GLM + P + K F LL
Sbjct: 115 KCFVQVNVSGESSKQGVSLSEVETFIKELKQYENIEIIGLMTMAPLTDDESYIKRLFQLL 174
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E K T+LSMGM+ DF LA GA+ VRIG+ + G+
Sbjct: 175 KLKRDEIKALNLNYAPCTELSMGMSNDFHLAAEEGASFVRIGTKLVGK 222
>gi|46447369|ref|YP_008734.1| hypothetical protein pc1735 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401010|emb|CAF24459.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 210
Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats.
Identities = 65/208 (31%), Positives = 104/208 (50%), Gaps = 14/208 (6%)
Query: 21 AKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
+ R V+L+ VSK ++ G F EN++ EA K + + D+Q IG
Sbjct: 4 SGRDPQDVNLIVVSKNQPITVMQDVYQSGCRQFGENRVMEALAKIPEMPR--DIQWHLIG 61
Query: 81 SLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
+LQSNKV++I++ +I +V A +S +++ + + +QVN E K G+
Sbjct: 62 TLQSNKVAKILNSSISLIHSVHSFSLAKKISEGSLQKQKITSILLQVNVSKEESKQGLTH 121
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIARECK--------LTK 188
++ + + ++ L +EGLM I P + + F L E+ + K
Sbjct: 122 DEWEKLLAPLQELSNLRIEGLMTIAPHTADLGYVRFCFRQLFELREKWKKQMNNPTYFKH 181
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFG 216
LSMGMT D+ +AI GAT +RIGSGIFG
Sbjct: 182 LSMGMTNDYLIAIEEGATLLRIGSGIFG 209
>gi|302550792|ref|ZP_07303134.1| alanine racemase domain-containing protein [Streptomyces
viridochromogenes DSM 40736]
gi|302468410|gb|EFL31503.1| alanine racemase domain-containing protein [Streptomyces
viridochromogenes DSM 40736]
Length = 239
Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats.
Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I ++ A R +D V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAKVERRIADACTAAGRERDEVTLIVVTKTYPASDVRILSELGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + F+G LQ+NKV +V D +++V R K + LS E ++ R L
Sbjct: 68 PKAAACMDLP-LTWHFVGQLQTNKVRSVVGYADFVQSVDRSKLVTALSKEAVRTGRELGC 126
Query: 123 YIQVNTGY----EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPHF 174
IQV ++ G+ P + L + L + GLM + P G + F
Sbjct: 127 LIQVALDAGESGRGERGGLAPEGIGELAGLVAEAPGLRLAGLMTVAPLTGEYAGREQAAF 186
Query: 175 YLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +++ + + T +S GM+ D E A+A+GAT VR+GS + G RP
Sbjct: 187 GRLLDLSTDLRRSHPTATMVSAGMSADLEQAVAAGATHVRVGSAVLGVRP 236
>gi|326779870|ref|ZP_08239135.1| protein of unknown function UPF0001 [Streptomyces cf. griseus
XylebKG-1]
gi|326660203|gb|EGE45049.1| protein of unknown function UPF0001 [Streptomyces cf. griseus
XylebKG-1]
Length = 239
Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats.
Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I ++ A R ++ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAQVEERIASACAAAGRKREEVTLIVVTKTYPASDVRILHQLGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + F+G LQ+NKV + DV+++V R K + LS ++ R L
Sbjct: 68 PKATA-CADLSLTWHFVGQLQTNKVRSVTGYADVVQSVDRAKLVTALSAAAVRGERELGC 126
Query: 123 YIQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPHF 174
IQV E ++ G+ P+ + L ++GLM + P G + F
Sbjct: 127 LIQVALDAESGERGERGGVAPDGVAELAAAIGAAPGLRLDGLMTVAPLAGEFAGRQRAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L EI+ + +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 DRLMEISSRLRAGHPAANMVSAGMSGDLEDAVAAGATHVRVGTAVLGVRP 236
>gi|329117481|ref|ZP_08246198.1| pyridoxal phosphate enzyme, YggS family [Streptococcus parauberis
NCFD 2020]
gi|326907886|gb|EGE54800.1| pyridoxal phosphate enzyme, YggS family [Streptococcus parauberis
NCFD 2020]
Length = 223
Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 101/226 (44%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + +AI A R + ++++AV+K VD+ + G AEN++ +
Sbjct: 1 MDLQKNRDQVLKDVGTAAIEAHRNPEDINVIAVTKYVDAGIAGALMETGLTHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L K D+ IGSLQ KV +++L D + A + +
Sbjct: 61 FLDKYESL-KNKDLTWHLIGSLQRRKVKSVINLVDYFHALDSVSLAEEIQKRA---KHPI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K G ++ + Q Q+ + GLM + P + + F
Sbjct: 117 KCFLQVNISEEESKHGFTISELPQVIEELAQLNQIQLVGLMTMAPLGASEGTIRDIFKKA 176
Query: 178 SEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ + T+LSMGM+ D+++AI GAT VRIGS F
Sbjct: 177 NKLRLKLESENRKNMPFTELSMGMSGDYKIAIQEGATFVRIGSSFF 222
>gi|172057965|ref|YP_001814425.1| hypothetical protein Exig_1956 [Exiguobacterium sibiricum 255-15]
gi|171990486|gb|ACB61408.1| conserved hypothetical protein [Exiguobacterium sibiricum 255-15]
Length = 223
Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats.
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 16/225 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +Q +Q ++ + + K V L+ V+K V S+ L+ G EN+ +
Sbjct: 1 MSISENVQQVRQNMKQAYEKTDQKKQ-VQLIGVTKSVSSEVAAELLAAGITALGENRPEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L +E + FIG+LQ+ KV +++ DV+ ++ R A ++ + +
Sbjct: 60 LTDKQTVLGREA-CEWHFIGTLQTRKVRQVIDRIDVLHSLDRLHLAEEINKRAKQ---PV 115
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K GI P F+ Q + V GLM + P + + F L
Sbjct: 116 DCFVQVNVSGEESKQGIDPEDVHSFLHEVGQYPMVRVIGLMTMAPLTEDEQVLRSVFRSL 175
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ E T+LSMGM+ D+++AI GAT VRIG+ +
Sbjct: 176 RVLRDEVATRQLPHAPCTELSMGMSSDYQIAIEEGATYVRIGTTL 220
>gi|295115171|emb|CBL36018.1| pyridoxal phosphate enzyme, YggS family [butyrate-producing
bacterium SM4/1]
Length = 200
Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats.
Identities = 46/197 (23%), Positives = 91/197 (46%), Gaps = 8/197 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ +++I + + R + V+L++VSK + ++ A G F EN +QE
Sbjct: 2 IRENLEGVRERIRLACERSGRRVEDVTLISVSKTKPVEMLQEAYEAGSRDFGENHVQEIL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + + DV+ IG LQ NKV +++ +I +V A + E K+ + +
Sbjct: 62 EKHGQMPE--DVRWHMIGHLQKNKVRQVIDKVVLIHSVDTVGLAEQIEKEAAKRDLDIDI 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLSE 179
++VN E K G P + ++ V ++++GLM I P + + + F L
Sbjct: 120 LLEVNVAGEESKFGFCPEEVEEAVRKISLLPHVHIKGLMTIAPFVVNSEDNREVFKKLYN 179
Query: 180 IARECK---LTKLSMGM 193
+ + + + +SM
Sbjct: 180 LYVDIRGKNIDNVSMVC 196
>gi|260945681|ref|XP_002617138.1| hypothetical protein CLUG_02582 [Clavispora lusitaniae ATCC 42720]
gi|238848992|gb|EEQ38456.1| hypothetical protein CLUG_02582 [Clavispora lusitaniae ATCC 42720]
Length = 268
Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats.
Identities = 74/237 (31%), Positives = 107/237 (45%), Gaps = 27/237 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + K++N+ V LVAVSK+ S I + G F EN +QE
Sbjct: 34 LVENYERVLSKVKNAET-----SKPVRLVAVSKLKPSSDIMALYNHGVRHFGENYVQELT 88
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD---VIETVSREKTASLL-SLEMIKQSR 118
K L K D+Q FIGSLQ+ K ++ D +ET+ K L +
Sbjct: 89 AKAKELPK--DIQWHFIGSLQTGKCKDLAKDIDNLYAVETIDALKKCKKLENARRAVDFA 146
Query: 119 FLPVYIQVNTGYEIQKSGIMPN------QTKDFVILCRQKYQLNVEGLMCIPPAMGNP-- 170
+ VY+Q+NT E QK+G +T DF+ + +L EGLM I +
Sbjct: 147 PINVYLQINTSSEDQKAGYRLENMEEIYETVDFLTNKTECKKLKFEGLMTIGSFAESTSE 206
Query: 171 ---KPHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L+E+ + +LSMGM+ DF AI+ G++SVR+G+ IF RP
Sbjct: 207 SGLNQDFAKLAELKKTLDEKFSLDLQLSMGMSNDFTTAISQGSSSVRVGTSIFEARP 263
>gi|256788301|ref|ZP_05526732.1| hypothetical protein SlivT_27764 [Streptomyces lividans TK24]
gi|289772195|ref|ZP_06531573.1| YggS family pyridoxal phosphate enzyme [Streptomyces lividans TK24]
gi|289702394|gb|EFD69823.1| YggS family pyridoxal phosphate enzyme [Streptomyces lividans TK24]
Length = 239
Score = 223 bits (569), Expect = 1e-56, Method: Composition-based stats.
Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +Q+I ++ A RP+ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAKVEQRITDACAAAGRPRQDVTLIVVTKTYPADDVRILSELGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + F+G LQ+NKV +V DV+++V R + + LS E ++ R +
Sbjct: 68 PKAAA-CSDLPLSWHFVGQLQTNKVRSVVGYADVVQSVDRARLVTALSKEAVRAGREVGC 126
Query: 123 YIQVNTGY----EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPHF 174
+QV ++ G+ P ++ L L ++GLM + P G + F
Sbjct: 127 LLQVALDAEEGGRGERGGVPPAGIEELADLVAGSEGLRLDGLMTVAPLSGEYSGRQQAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +++ + T +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 EHLMDLSTRVRRTHPAANMVSAGMSADLEQAVAAGATHVRVGTAVLGVRP 236
>gi|320101819|ref|YP_004177410.1| alanine racemase domain-containing protein [Isosphaera pallida ATCC
43644]
gi|319749101|gb|ADV60861.1| alanine racemase domain protein [Isosphaera pallida ATCC 43644]
Length = 295
Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 60/235 (25%), Positives = 90/235 (38%), Gaps = 23/235 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + + KI + A RP S LVAV+K ++ + + G F EN Q
Sbjct: 49 LRANVAMVRGKIAEAESRAGRPAGSARLVAVTKYWPAEWLAPLAALGADTFGENHPQAVW 108
Query: 63 KKWIPLR-------KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
K L + + IG LQSNK + + ++I V K L
Sbjct: 109 SKVPALASWRGPDGEILTIHWHLIGHLQSNKARRTLPMVEMIHGVDSLKLLKTLDQLAAN 168
Query: 116 QS-------RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG 168
V +QVN E K G +++ GLM +
Sbjct: 169 VGTATTTSHPLARVCLQVNLSGEASKHGWSAEGLMADAQEIAALRSISIVGLMTMAALGT 228
Query: 169 NP---KPHFYLLSEIARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ +P F L E+ L +LSMGM+ D+E A+ +G+T VRIGS +
Sbjct: 229 DTRTARPTFEALRELRDRFAQASGLTLPELSMGMSNDYEAAVEAGSTLVRIGSAL 283
>gi|326333487|ref|ZP_08199729.1| pyridoxal phosphate enzyme, YggS family [Nocardioidaceae bacterium
Broad-1]
gi|325948732|gb|EGD40830.1| pyridoxal phosphate enzyme, YggS family [Nocardioidaceae bacterium
Broad-1]
Length = 233
Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 72/225 (32%), Positives = 109/225 (48%), Gaps = 8/225 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +++I +A A RP + V LV V+K + +R+ G EN+ QEA
Sbjct: 8 IAAGLAETRERIAVAAKAAGRPAEDVHLVVVTKFFPASDVRILAGLGVTDVGENRHQEAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ ++ +IG LQSNK + + S DV+E+V R S LS ++ + L V
Sbjct: 68 A-KAAECADLGLRWHYIGGLQSNKAAAVASYADVVESVDRSSLLSRLSRGAGERGQILDV 126
Query: 123 YIQVNTG--YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+QV+ ++G P +D + L + GLM + P +P P F L+ I
Sbjct: 127 LLQVSLDPPGREGRAGADPGDVRDLAAEVMETDGLRLRGLMAVAPLGEDPDPAFVRLARI 186
Query: 181 ARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + T LS GM+ D E AIA GAT VR+GS + GERP
Sbjct: 187 REDFLVEYPEATVLSAGMSGDLEQAIAHGATHVRVGSAVLGERPT 231
>gi|297559878|ref|YP_003678852.1| alanine racemase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296844326|gb|ADH66346.1| alanine racemase domain protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 242
Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 63/210 (30%), Positives = 97/210 (46%), Gaps = 12/210 (5%)
Query: 20 LAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFI 79
A R D VSLVAV+K + +R+ S G EN+ QEA K + + F+
Sbjct: 29 KAGRSPDEVSLVAVTKTHPASDVRILASLGVTDVGENRDQEAAPKAAE-TADLGLTWHFV 87
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ------ 133
G LQ+NK + S DV+ +V R + A L R L +Q+N + +
Sbjct: 88 GQLQTNKARSVASYADVVHSVDRARLARALGERAAAAGRSLTCLVQINLDEDSRAGVIGP 147
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA-----RECKLTK 188
+ G+ P + + L + G+M + P G+P F L E+A R + T
Sbjct: 148 RGGVDPGDALELAARIEEHEALVLGGVMAVAPREGDPSAAFARLQEVAARIRDRYPRATV 207
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+S GM+ D E A+ GAT +R+G+ + G R
Sbjct: 208 VSAGMSGDLEAAVERGATHLRLGTALLGNR 237
>gi|294787206|ref|ZP_06752459.1| pyridoxal phosphate enzyme, YggS family [Parascardovia denticolens
F0305]
gi|315227251|ref|ZP_07869038.1| TIM-barrel fold protein [Parascardovia denticolens DSM 10105]
gi|294484562|gb|EFG32197.1| pyridoxal phosphate enzyme, YggS family [Parascardovia denticolens
F0305]
gi|315119701|gb|EFT82834.1| TIM-barrel fold protein [Parascardovia denticolens DSM 10105]
Length = 262
Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 70/240 (29%), Positives = 107/240 (44%), Gaps = 21/240 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + ++ I +A A R V L+A K + +I A+ G + EN+ QE
Sbjct: 23 ISDAVRRAFDSIAQAAEQAGRRPSDVRLLAAVKTRNVGEIMAAVKTGVRLLGENRPQEVM 82
Query: 63 KKWIPLRKEW---------DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
L + V IG LQSNK+++I+ L +E+V + LS
Sbjct: 83 AVASGLAQACREEGLDLGEQVGFHLIGQLQSNKINKILGLVSTVESVDSLELGVKLSSRA 142
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--- 170
++ L V+++VN E KSG P + +D Q L V GLM + + +
Sbjct: 143 VRAGLSLDVFLEVNVSGEEAKSGCRPQEAEDLAFALAQLPNLVVRGLMTVGAHVDDEAQV 202
Query: 171 KPHFYLLSEIAR------ECKLT---KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ F L I E L LSMGM+ D+ LAIA GAT VR+G+ +FG+R +
Sbjct: 203 RSGFAHLRRIREGILSQGEAGLDSCRDLSMGMSGDYPLAIAEGATIVRLGTALFGQRAYR 262
>gi|77411425|ref|ZP_00787771.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
CJB111]
gi|77162511|gb|EAO73476.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
CJB111]
Length = 224
Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + A+ A R +SV +VAV+K V+ + + G EN++ +
Sbjct: 2 MNLQENKTAIFDNVSKLALKAGRAPESVHIVAVTKYVNCQTTEALIRTGVNHIGENRVDK 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ E + IGSLQ KV ++++ D + K A+ + K +
Sbjct: 62 FLEKYQALKDEK-LTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAAEIQKRAQK---PI 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
++QVN E K G Q D + L + ++ + G+M + P + F
Sbjct: 118 KCFLQVNISREDSKHGFTIEQIDDALNLISRYDKIELIGIMTMAPLKATKEEISSIFEET 177
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + T+LSMGM+RD+++AI +G+T VRIG+ F
Sbjct: 178 ESLRKRLQARNIERMPFTELSMGMSRDYDIAIQNGSTFVRIGTSFF 223
>gi|315639615|ref|ZP_07894755.1| cell division protein YlmE [Enterococcus italicus DSM 15952]
gi|315484576|gb|EFU75032.1| cell division protein YlmE [Enterococcus italicus DSM 15952]
Length = 223
Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats.
Identities = 60/223 (26%), Positives = 110/223 (49%), Gaps = 15/223 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ +Q+++ + LA R ++SV+LVAV+K VD + ++ G AEN+++
Sbjct: 2 ISENLRKVEQEVQKACALASRQRESVTLVAVTKTVDLETTIEVVTNGVTDCAENRVEPFL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + K+ +V FIG+LQ KV +++ D + A+ + K+ +
Sbjct: 62 AKKEAM-KDLNVTWHFIGNLQRRKVKHVINEVDYFHALESLSLANEIQKRATKK---IRC 117
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLSE 179
+I+VN E K GI P++ FV + ++ + GLM + P + F L
Sbjct: 118 FIEVNVSGEESKQGIKPSELSSFVEQLSEFDKVEIVGLMTMAPFQSTKSEQRDVFLQLRN 177
Query: 180 IARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGI 214
+ + + +LSMGM+ D+ +AI GAT +R+G+ +
Sbjct: 178 LQKSIEAQQLTYAPCHELSMGMSNDYTVAIEEGATFIRVGTAL 220
>gi|296394950|ref|YP_003659834.1| alanine racemase [Segniliparus rotundus DSM 44985]
gi|296182097|gb|ADG99003.1| alanine racemase domain protein [Segniliparus rotundus DSM 44985]
Length = 229
Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats.
Identities = 59/223 (26%), Positives = 99/223 (44%), Gaps = 10/223 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ +++I ++ + R V+LV V+K + + + G F E++ QEA+
Sbjct: 7 LAGRLEQVRERIASACAKSGRDACEVTLVVVTKFFPASDVALLYELGCREFGESRDQEAR 66
Query: 63 -KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + IG +Q NK I S V+++V + + L
Sbjct: 67 AKAAQLAEAAPQARWHMIGQIQRNKAKSIASWAHVVQSVDDSRLVAAFEKTAQ----PLD 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-----KPHFYL 176
V +QV+ + ++SG + + L ++GLM IPP +P
Sbjct: 123 VLVQVSLDGDEKRSGAAAERVFELADQVEAASNLRLKGLMAIPPLGADPAQAFAALAALH 182
Query: 177 LSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ A T LS GM+ DFE AIA+G++ VR+G+ I G RP
Sbjct: 183 AALKAAHPDATALSAGMSGDFETAIAAGSSCVRVGAAILGSRP 225
>gi|237785348|ref|YP_002906053.1| hypothetical protein ckrop_0752 [Corynebacterium kroppenstedtii DSM
44385]
gi|237758260|gb|ACR17510.1| conserved hypothetical protein [Corynebacterium kroppenstedtii DSM
44385]
Length = 249
Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats.
Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 19/237 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++L ++I +A A R + L+ V+K + ++ CG + EN+ QEA+
Sbjct: 11 LSSRLDEVSRRIARAAESAGRDPKDIELLPVTKFHPYEDLQALADCGVTVVGENREQEAR 70
Query: 63 KKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS---LEMIKQSR 118
K L ++ + + IG +QS K + I + TV R K L +
Sbjct: 71 DKARRLGEDGVGLHIDMIGQVQSKKTNHIARWAHRVHTVDRLKIVHGLDNGMKRALDAGD 130
Query: 119 F----------LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG 168
LPV+IQ + + + G + L +EGLM +PP
Sbjct: 131 RVSTQHENVDELPVFIQWSADGDPSRGGAKEDDLDSLADAVNSSQYLTLEGLMVVPPRDD 190
Query: 169 NPKPHFYLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ F +E++ + LS GM+ D E AIA+G+T VR+G+ I G RP
Sbjct: 191 DSAQVFARAAELSEAIRQKHEGRGGLSAGMSGDLENAIAAGSTVVRVGTAILGSRPV 247
>gi|229490375|ref|ZP_04384216.1| pyridoxal phosphate enzyme, YggS family [Rhodococcus erythropolis
SK121]
gi|229322665|gb|EEN88445.1| pyridoxal phosphate enzyme, YggS family [Rhodococcus erythropolis
SK121]
Length = 244
Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats.
Identities = 57/236 (24%), Positives = 95/236 (40%), Gaps = 18/236 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + ++ + + A R V+L+ V+K + R+ G F E++ QEA
Sbjct: 6 ISTALDSVRARLAAACLAAGREVSDVALLPVTKFFPASDARILYELGCREFGESREQEAV 65
Query: 63 KKWIPL-------RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM-- 113
+K + V+ IG LQ NK + I +V + A L
Sbjct: 66 EKVADFDGAAQTGAIDDPVRWHMIGQLQRNKARSVAKWAYAIHSVDSARLADALDRAALS 125
Query: 114 ----IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
+++ L IQV+ + + G+ + L GLM +PP +
Sbjct: 126 ALSDGERTEPLRALIQVSLDGDPARGGVPTGELTPLAERIESAEGLEFAGLMAVPPLGSD 185
Query: 170 PKPHFYLLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
P F +L + + T+LS GMT D E A+ G+T VR+G+ + G RP
Sbjct: 186 PDEQFEILRRAHLLILESHPRATELSAGMTGDLEAAVRHGSTCVRVGTALLGSRPV 241
>gi|67541707|ref|XP_664621.1| hypothetical protein AN7017.2 [Aspergillus nidulans FGSC A4]
gi|40742473|gb|EAA61663.1| hypothetical protein AN7017.2 [Aspergillus nidulans FGSC A4]
Length = 349
Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats.
Identities = 77/252 (30%), Positives = 113/252 (44%), Gaps = 38/252 (15%)
Query: 2 SLGNKLQVFKQKIENSAILAKRP-KDSVSLVAVSKMVDSKKIRVALS--CGQVIFAENKL 58
+L L +I+++ +K P LVAVSK+ + I + F EN L
Sbjct: 98 TLLANLASVTSRIQSA--SSKLPLPKEPRLVAVSKLKPASDILALHNPPTAHSHFGENYL 155
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS---LFDVIETVSREKTASLLSLEMIK 115
QE ++K L ++ FIG LQSNK + +E+V EK A+LL +
Sbjct: 156 QELQEKARLLP--PTIKWHFIGGLQSNKCVSLARDTRALWAVESVDSEKKATLLDKGWGE 213
Query: 116 QS------RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR----QKYQLNVEGLMCI-- 163
+ L V++QVNT E KSG+ P + + V LCR + +L ++GLM I
Sbjct: 214 RKAEMGGEEKLRVFVQVNTSGEENKSGVDPGE--EVVRLCRFIMDKCPRLRLQGLMTIGA 271
Query: 164 -----PPAMGNPKPHFYLLSEIARECKLT---------KLSMGMTRDFELAIASGATSVR 209
F L + +LSMGM+ DFE AIA G+ VR
Sbjct: 272 IARSKATTAETENEDFICLKQARERVNEALGLEGDARLELSMGMSEDFEGAIALGSDEVR 331
Query: 210 IGSGIFGERPCQ 221
+G+ IFG+RP +
Sbjct: 332 VGTTIFGDRPPK 343
>gi|134102281|ref|YP_001107942.1| pyridoxal-5'-phosphate dependent enzyme [Saccharopolyspora
erythraea NRRL 2338]
gi|291003756|ref|ZP_06561729.1| pyridoxal-5'-phosphate dependent enzyme [Saccharopolyspora
erythraea NRRL 2338]
gi|133914904|emb|CAM05017.1| pyridoxal-5'-phosphate dependent enzyme [Saccharopolyspora
erythraea NRRL 2338]
Length = 247
Score = 222 bits (568), Expect = 2e-56, Method: Composition-based stats.
Identities = 67/230 (29%), Positives = 105/230 (45%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ +++++ + A R + V L+AV+K + + G AEN+ QEA+
Sbjct: 13 IAESLREVRERVDAACRAAGRQPEEVELLAVTKTFPAGDAALLADLGLTELAENREQEAR 72
Query: 63 KK---WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE------M 113
K + LR E V+ IG LQ NK +V DV+E+V + A L
Sbjct: 73 GKVAEFAELRPEAAVRWHMIGQLQRNKARSVVRWADVVESVDSVRLAEALRRAAANALDA 132
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH 173
++S L V IQV + G P + L + G+M + P G+P
Sbjct: 133 GERSEPLDVLIQVGLDDAAGRGGCPPGDVSALAAEITRHSDLRLRGVMAVAPLGGDPDVA 192
Query: 174 FYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F LS IAR + ++S GM+ D E A+A G+T VR+G+ + G R
Sbjct: 193 FATLSGIARRLQEDYPEAVEMSAGMSGDLESAVAHGSTRVRVGTALLGGR 242
>gi|32267181|ref|NP_861213.1| hypothetical protein HH1682 [Helicobacter hepaticus ATCC 51449]
gi|32263234|gb|AAP78279.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 222
Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 75/223 (33%), Positives = 114/223 (51%), Gaps = 12/223 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ ++IE + LA P +SLVAVSK +++IR CGQ F ENK+Q+ +
Sbjct: 2 LALNLERILRRIERA-RLAYSPHQIISLVAVSKYQSTEQIRALYECGQRAFGENKVQDLR 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFLP 121
K L + ++ FIG+LQ NK++ ++SL ++ ++ K A L + +Q +
Sbjct: 61 AKIESL-DDLPLEWHFIGNLQENKINTLLSLNPTLLHSLDSIKLALALQKRLGEQ--KIR 117
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
+QVN E KSG+ K+ C + +EG+M I + + F L
Sbjct: 118 ALLQVNAANEESKSGVSVESAKEIYEHICATCPNIKLEGIMSIGAHSDDRALIERSFRLT 177
Query: 178 SEIARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ K LSMGM+ DFE+AIA GA VRIGS +F E
Sbjct: 178 RDVFDSLKGSGAKILSMGMSGDFEIAIAYGANLVRIGSKLFEE 220
>gi|241949269|ref|XP_002417357.1| conserved hypothetical protein [Candida dubliniensis CD36]
gi|223640695|emb|CAX45006.1| conserved hypothetical protein [Candida dubliniensis CD36]
Length = 246
Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 74/213 (34%), Positives = 98/213 (46%), Gaps = 22/213 (10%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V+LVAVSK+ S I S G F EN +QE K L D++ FIG LQS K
Sbjct: 34 VNLVAVSKLKPSSDIMALYSIGVRHFGENYVQELISKSQELP--PDIKWHFIGGLQSGKA 91
Query: 88 SEI---VSLFDVIETVSREKTASLLSLEMIKQS--RFLPVYIQVNTGYEIQKSGI----M 138
++ V +ET+ K L K + V++QVNT E QKSG
Sbjct: 92 KDLSKHVKNLYAVETIDSLKKCKQLDNTRNKIDGSDDINVFLQVNTSGEEQKSGFQNLQD 151
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-----PKPHFYLLSEIARECKLT-----K 188
T +F+ L +L GLM I + F L E+ + +
Sbjct: 152 IESTVEFL-LSSDCKKLKFLGLMTIGSFNESISNEGENQDFKKLVEMKQILDSKYNLNLE 210
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
LSMGM+ DFE AI G+TSVR+G+ IFG RP +
Sbjct: 211 LSMGMSSDFEQAIKQGSTSVRVGTTIFGSRPPK 243
>gi|25010596|ref|NP_734991.1| hypothetical protein gbs0527 [Streptococcus agalactiae NEM316]
gi|23094949|emb|CAD46171.1| Unknown [Streptococcus agalactiae NEM316]
Length = 223
Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + A+ A R +SV +VAV+K V+ + + G EN++ +
Sbjct: 1 MNLQENKTAIFDNVSKLALKAGRAPESVHIVAVTKYVNCQTTEALIRTGVNHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ E + IGSLQ KV ++++ D + K A+ + K +
Sbjct: 61 FLEKYQALKDEK-LTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAAEIQKRAQK---PV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
++QVN E K G Q D + L + ++ + G+M + P + F
Sbjct: 117 KCFLQVNISREDSKHGFTIEQIDDALNLISRYDKIELIGIMTMAPLKATKEEISSIFEET 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + T+LSMGM+RD+++AI +G+T VRIG+ F
Sbjct: 177 ESLRKRLQARNIERMPFTELSMGMSRDYDIAIQNGSTFVRIGTSFF 222
>gi|21220560|ref|NP_626339.1| hypothetical protein SCO2080 [Streptomyces coelicolor A3(2)]
gi|5689952|emb|CAB51989.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 239
Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 65/230 (28%), Positives = 112/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +Q+I ++ A RP+ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAKVEQRITDACAAAGRPRQDVTLIVVTKTYPADDVRILSELGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + F+G LQ+NKV +V DV+++V R + + LS E ++ R +
Sbjct: 68 PKAAA-CSDLPLSWHFVGQLQTNKVRSVVGYADVVQSVDRARLVTALSKEAVRAGREVGC 126
Query: 123 YIQVNTGY----EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPHF 174
+QV ++ G+ P ++ L L ++GLM + P G + F
Sbjct: 127 LLQVALDAEEGGRGERGGVPPAGIEELADLVAGSEGLRLDGLMTVAPLSGEYAGRQQAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +++ + T +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 EHLMDLSTRVRRTHPAANMVSAGMSADLEQAVAAGATHVRVGTAVLGVRP 236
>gi|297199060|ref|ZP_06916457.1| alanine racemase domain-containing protein [Streptomyces sviceus
ATCC 29083]
gi|197715987|gb|EDY60021.1| alanine racemase domain-containing protein [Streptomyces sviceus
ATCC 29083]
Length = 239
Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +Q+I + A R ++ V+L+ V+K + +R+ G AENK Q+A
Sbjct: 8 LAANLAKVEQRIAAACAAAGRGREEVTLIVVTKTYPASDVRILSELGVRHVAENKDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + F+G LQ+NKV +V D++++V R K + LS E +K R +
Sbjct: 68 PKAAE-CSDLPLTWHFVGQLQTNKVRSVVGYADLVQSVDRSKLVTALSKEAVKAEREVGC 126
Query: 123 YIQVNT----GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPHF 174
IQV ++ G+ P + L + L ++GLM + P G + F
Sbjct: 127 LIQVALDAGSSERGERGGVAPGGIGELAGLVARAPGLRLDGLMTVAPLTGEYAGREQAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +++ + + +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 ERLMDLSTDLRRDHPAANMVSAGMSADLEQAVAAGATHVRVGTAVLGVRP 236
>gi|77408380|ref|ZP_00785120.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
COH1]
gi|77413550|ref|ZP_00789738.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
515]
gi|77160379|gb|EAO71502.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
515]
gi|77172983|gb|EAO76112.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
COH1]
gi|319744577|gb|EFV96930.1| cell division protein YlmE [Streptococcus agalactiae ATCC 13813]
Length = 224
Score = 222 bits (567), Expect = 2e-56, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + A+ A R +SV +VAV+K V+ + + G EN++ +
Sbjct: 2 MNLQENKTAIFDNVSKLALKAGRAPESVHIVAVTKYVNCQTTEALIRTGVNHIGENRVDK 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ E + IGSLQ KV ++++ D + K A+ + K +
Sbjct: 62 FLEKYQALKDEK-LTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAAEIQKRAQK---PV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
++QVN E K G Q D + L + ++ + G+M + P + F
Sbjct: 118 KCFLQVNISREDSKHGFTIEQIDDALNLISRYDKIELIGIMTMAPLKATKEEISSIFEET 177
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + T+LSMGM+RD+++AI +G+T VRIG+ F
Sbjct: 178 ESLRKRLQARNIERMPFTELSMGMSRDYDIAIQNGSTFVRIGTSFF 223
>gi|156743669|ref|YP_001433798.1| alanine racemase domain-containing protein [Roseiflexus
castenholzii DSM 13941]
gi|156234997|gb|ABU59780.1| alanine racemase domain protein [Roseiflexus castenholzii DSM
13941]
Length = 240
Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats.
Identities = 74/212 (34%), Positives = 100/212 (47%), Gaps = 21/212 (9%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE-WDVQLRFIGSLQSNK 86
+ LV V+K + IR AL+ G EN++QEA+ K L + + L IG LQ+NK
Sbjct: 29 IRLVGVTKAQPVEAIRAALAAGLHEIGENRVQEAEAKMSALAADRRRLTLHLIGHLQTNK 88
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF- 145
+ +LFD++ +V + A +L + + LPV +QVN E+ KSG +
Sbjct: 89 AKKAATLFDMVHSVDSLRLAQILDRHAAETTDRLPVLLQVNVSGEMTKSGFDLCHWETLP 148
Query: 146 ---------VILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKL------- 186
V L V GLM I P +P +P F + L
Sbjct: 149 DVYDRFCADVEQILALPHLEVRGLMTIAPWGPDPEQARPVFRAARRLRDSLALRFPATAW 208
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGMT DFE+AI GAT VRIG IFGER
Sbjct: 209 RDLSMGMTDDFEVAIEEGATIVRIGRAIFGER 240
>gi|78184224|ref|YP_376659.1| hypothetical protein Syncc9902_0647 [Synechococcus sp. CC9902]
gi|78168518|gb|ABB25615.1| Protein of unknown function UPF0001 [Synechococcus sp. CC9902]
Length = 199
Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats.
Identities = 63/193 (32%), Positives = 95/193 (49%), Gaps = 4/193 (2%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
+AVSK + IR S GQ F E++LQEA +K L + +Q FIG LQ NKV +
Sbjct: 2 LAVSKGHPAASIRAVASLGQQAFGESRLQEAVEKQ-ALLSDLTLQWHFIGRLQRNKVRGV 60
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
V F VI +V A +S +++ V +QV + K G+ P++ R
Sbjct: 61 VKAFSVIHSVDSFALAERVSRIAVEEGCCPDVLLQVRFREDPTKGGMEPSELLSAWPQLR 120
Query: 151 QKYQLNVEGLMCIPPA---MGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATS 207
L + GLM + P + F +A + L SMGM+ D+ A+A+G+T
Sbjct: 121 ALPSLRLMGLMTMAPLGLEGEERQTLFLECRSLADQLGLPDCSMGMSGDWTEAVAAGSTW 180
Query: 208 VRIGSGIFGERPC 220
+R+GS +FG+R
Sbjct: 181 LRLGSAVFGQRDV 193
>gi|311895534|dbj|BAJ27942.1| hypothetical protein KSE_21190 [Kitasatospora setae KM-6054]
Length = 262
Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats.
Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 15/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
LG L V +++I ++ A RP+ V+L+ V+K ++ + G AEN+ Q+A
Sbjct: 30 LGANLDVVERRIADACAAAGRPRGEVTLIVVTKTYPAEDSALLAGLGVTDVAENRDQDAA 89
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE-MIKQSRFLP 121
K E + F+G LQ+NK +V DV+ +V R + L+ + L
Sbjct: 90 PKAER-CVELPLTWHFVGQLQTNKARSVVRYSDVVHSVDRARLVDSLAAAVRAAERPPLG 148
Query: 122 VYIQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP----PAMGNPKPH 173
+QV E ++G+ P + L ++G+M + P G+P
Sbjct: 149 CLVQVALEKEAGEGEHRAGVAPAEVLALAERIADTPGLRLDGVMTVAPLAGPLAGDPARA 208
Query: 174 FYLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L+EIA + + +S GM+ D E AIA+GAT VR+G+ + G R
Sbjct: 209 FARLAEIASDVRAAHPAATMVSAGMSGDLEQAIAAGATHVRVGTAVLGVR 258
>gi|198282580|ref|YP_002218901.1| alanine racemase domain-containing protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218665726|ref|YP_002424770.1| conserved hypothetical protein TIGR00044 [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198247101|gb|ACH82694.1| alanine racemase domain protein [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218517939|gb|ACK78525.1| conserved hypothetical protein TIGR00044 [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 222
Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats.
Identities = 66/226 (29%), Positives = 100/226 (44%), Gaps = 17/226 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ +L + +I + P L+A SK V + +R A + G F EN LQE
Sbjct: 1 MSIAERLAHVQGEIADH------PPQ--CLLAASKHVTAATLRDAYALGLRHFGENFLQE 52
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A K LR + FIG +Q NK + + FD +E+V R A L L
Sbjct: 53 ALDKQTALRDLDGIIWHFIGRIQRNKTALLARHFDWVESVDRPLIAERLH-AARAGMEPL 111
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSE 179
V I+V E K G P + ++ + L + GLM + P + F ++E
Sbjct: 112 NVLIEVAISGEETKGGCAPEDVPELALVISRLSHLRLRGLMALVHPQPELAEADFRRMAE 171
Query: 180 IARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + L LSMG + D+ A+ GAT +R+G+ +FG R
Sbjct: 172 LFLALRQTQVHADLDTLSMGTSADYLQALQQGATEIRLGTILFGAR 217
>gi|303255986|ref|ZP_07342014.1| hypothetical protein CGSSpBS455_10830 [Streptococcus pneumoniae
BS455]
gi|302597045|gb|EFL64163.1| hypothetical protein CGSSpBS455_10830 [Streptococcus pneumoniae
BS455]
Length = 223
Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ DV IG+LQ KV +++ D + K A + R +
Sbjct: 61 FLEKYEALKAR-DVAWHLIGTLQRRKVKDVIQFVDYFHALDSVKLAGEIQKR---SDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K G + D + + ++ GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFSREELLDILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAT 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQKEIQEEQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|241667528|ref|ZP_04755106.1| hypothetical protein FphipA2_02080 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254876074|ref|ZP_05248784.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842095|gb|EET20509.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 222
Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats.
Identities = 72/203 (35%), Positives = 107/203 (52%), Gaps = 14/203 (6%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
L+AVSK KI S GQ+ F EN QE ++K L +++ FIGSLQS K+
Sbjct: 23 RLLAVSKYQSIDKIEYLASLGQLDFGENYFQELEQKAQQLP---NLKWHFIGSLQSRKIK 79
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
IV D I++V + + +S I +++ + V++Q+N ++ KSG Q D +
Sbjct: 80 HIVKYADSIQSVEKIEHLEKISKAAINENKHIDVFLQINIDDDVSKSGFKSIQLDDVIEA 139
Query: 149 C---RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR--------ECKLTKLSMGMTRDF 197
++ L V GLMCIP +P+ F + E KL++LSMGM+ D+
Sbjct: 140 IVKAKKFSNLKVVGLMCIPAKSDSPEKSFAKMKVFFDTINASLAYELKLSRLSMGMSADY 199
Query: 198 ELAIASGATSVRIGSGIFGERPC 220
+LAI G+T VRIGS +FG R
Sbjct: 200 KLAIQYGSTDVRIGSSLFGIREA 222
>gi|68488827|ref|XP_711760.1| hypothetical protein CaO19.10312 [Candida albicans SC5314]
gi|68488872|ref|XP_711736.1| hypothetical protein CaO19.2794 [Candida albicans SC5314]
gi|46433058|gb|EAK92514.1| hypothetical protein CaO19.2794 [Candida albicans SC5314]
gi|46433083|gb|EAK92538.1| hypothetical protein CaO19.10312 [Candida albicans SC5314]
Length = 277
Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats.
Identities = 72/212 (33%), Positives = 100/212 (47%), Gaps = 23/212 (10%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V+LVAVSK+ S I S G F EN +QE K L D++ FIG LQS K
Sbjct: 63 VNLVAVSKLKPSSDIMALYSIGVRHFGENYVQELIAKSQELPN--DIKWHFIGGLQSGKA 120
Query: 88 SEI---VSLFDVIETVSREKTASLLSLEMIK-QSRFLPVYIQVNTGYEIQKSGI----MP 139
++ V+ +ET+ K L +K + + V++Q+NT E QKSG
Sbjct: 121 KDLSKHVANLYAVETIDSLKKCKQLDNTRVKVEGDDINVFLQINTSGEEQKSGFQNLQDI 180
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIARECKLT----- 187
T +F+ L +L GLM I + F L E+ +
Sbjct: 181 ESTVEFL-LSSDCKKLKFLGLMTIGSFNESISNENDKENQDFKKLVEMKQILDSKYNLNL 239
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+LSMGM+ DF+ AI G+TSVR+G+ IFG RP
Sbjct: 240 ELSMGMSNDFQQAIKQGSTSVRVGTTIFGSRP 271
>gi|284030824|ref|YP_003380755.1| alanine racemase domain-containing protein [Kribbella flavida DSM
17836]
gi|283810117|gb|ADB31956.1| alanine racemase domain protein [Kribbella flavida DSM 17836]
Length = 241
Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats.
Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 16/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L LQ + +I + A R +DSV+LVA++K + +R + G EN+ QE K
Sbjct: 12 LRENLQKARDRIGAACRAAGRAEDSVTLVAITKTFPIEDVRTLAALGVTDVGENREQELK 71
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K D+ F+G LQSNK +V L V+ +V R+ S LS + + + +
Sbjct: 72 AKA---PDTSDLTWHFVGQLQSNKARSVVRLAQVVHSVDRKSLVSALSKAAVAEQKTMRC 128
Query: 123 YIQVNTGY--------EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
+QV+ + G+ P + + L + G+M + P +P F
Sbjct: 129 LLQVSLAEYGSAEAATGTSRGGVTPADVPELAAAVAEADGLELGGVMAVAPLGADPDEAF 188
Query: 175 YLLSEIARECKLTKL-----SMGMTRDFELAIASGATSVRIGSGIFGERP 219
L ++ + S GMT D + AI GAT VR+G + G RP
Sbjct: 189 AALRAVSSRLRSEHAGAGWISAGMTGDLDAAIRQGATHVRLGRALLGTRP 238
>gi|126640948|ref|YP_001083932.1| hypothetical protein A1S_0898 [Acinetobacter baumannii ATCC 17978]
Length = 185
Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats.
Identities = 59/184 (32%), Positives = 82/184 (44%), Gaps = 11/184 (5%)
Query: 46 LSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKT 105
+ GQ F EN LQEA K L+ D++ FIG +Q NK + FD + V R
Sbjct: 2 YAAGQRAFGENYLQEALDKIDALQD-LDIEWHFIGHVQRNKTKHLAEKFDWVHGVDRLII 60
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP 165
A LS + L + +QVN + K G P + V Q ++ + GLM IP
Sbjct: 61 AERLSNQCGDDQAALNICLQVNIDGQESKDGCAPEDVAELVAQMSQLPKIKLRGLMVIPA 120
Query: 166 AMGNPKPHFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
F ++ K LSMGM+ D E AIA+G+T VR+G+ +FG
Sbjct: 121 PDNT--AAFADAKKLFDAVKVQHAHPEDWDTLSMGMSSDLEAAIAAGSTMVRVGTALFGA 178
Query: 218 RPCQ 221
R
Sbjct: 179 RDYS 182
>gi|94469206|gb|ABF18452.1| proline synthetase co-transcribed protein-like protein [Aedes
aegypti]
Length = 258
Score = 222 bits (566), Expect = 3e-56, Method: Composition-based stats.
Identities = 72/217 (33%), Positives = 103/217 (47%), Gaps = 24/217 (11%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNK 86
LVAVSK + I S GQ F EN +QE +K L D++ FIG LQ+NK
Sbjct: 40 LVAVSKTKPIELILDGYSIGQRDFGENYVQELIEKANDPRILEHCKDIRWHFIGHLQTNK 99
Query: 87 VSEIVSL--FDVIETVSREKTASLLSLEMIK------QSRFLPVYIQVNTGYEIQKSGIM 138
+++IV+L +I+TV K A L+ K + + L V IQ+NT E +K+G
Sbjct: 100 INKIVNLPNLHMIQTVHNAKLAEGLNKAWEKTKAEKPEKQHLNVLIQINTSGEDEKNGTQ 159
Query: 139 PNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN----PKPHFYLLSE--------IARECK 185
P + + + L G+M I + P P F L + R+
Sbjct: 160 PAEAVNLYRFVTEKCPNLKCHGVMTIGRFGHDYSTGPNPDFIELMKCHQDICSTFERDPA 219
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++SMGM+ DF AI G+T VR+GS IFG R +
Sbjct: 220 ELQVSMGMSDDFVQAIEMGSTIVRVGSSIFGARAKKN 256
>gi|86605564|ref|YP_474327.1| hypothetical protein CYA_0860 [Synechococcus sp. JA-3-3Ab]
gi|86554106|gb|ABC99064.1| conserved hypothetical protein TIGR00044 [Synechococcus sp.
JA-3-3Ab]
Length = 224
Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats.
Identities = 60/224 (26%), Positives = 103/224 (45%), Gaps = 21/224 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++Q + +I + V ++AVSK IR A G F E+++QEA
Sbjct: 5 IHSRIQAIRAQI----------PEHVEIMAVSKGYSVNHIRAAYRAGIRHFGESRVQEAA 54
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ D+ IG LQ+NKV + F I++V + A L++ + + +
Sbjct: 55 AKQAQLQDLTDIVWHLIGHLQTNKVKPALRQFAWIDSVDSLRLAKLINQKAWELHLTPKL 114
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSE 179
+QV + K G + + Q Q+ + GLM I P + + F L+E
Sbjct: 115 CLQVKLAPDPHKFGWLIPDLLQSLPQLNQLLQVQIVGLMTILPLGLSSEAALELFRKLAE 174
Query: 180 IAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+A +L LSMGM+ D+ LA+A+G+ +R+G +F
Sbjct: 175 LADHIQRSGYEHLQLHTLSMGMSDDYPLAVAAGSNLIRLGRALF 218
>gi|72161519|ref|YP_289176.1| hypothetical protein Tfu_1115 [Thermobifida fusca YX]
gi|71915251|gb|AAZ55153.1| Protein of unknown function UPF0001 [Thermobifida fusca YX]
Length = 240
Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats.
Identities = 62/227 (27%), Positives = 102/227 (44%), Gaps = 12/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ ++++ + A R + +++VAV+K + +R+ G EN+ QEA
Sbjct: 10 LAANLERVRERVAAACAAAGRKPEEITIVAVTKQYPASDVRLLAELGIRDIGENRDQEAA 69
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K R D+ F+G LQ+NK + DV+ +V R + + L + R +
Sbjct: 70 PKAAECRD-LDLTWHFVGQLQTNKARSVARYADVVHSVDRMRLVTELGRRVRAAERTVTC 128
Query: 123 YIQVNTGYE------IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
IQVN + + G P + L + G+M + P G+P+ F
Sbjct: 129 LIQVNLDPDSEQGVLGPRGGADPGDVPALAEAVEAEEGLALGGVMAVAPRQGDPREAFDR 188
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L +A E + T +S GM+ D E AI GAT +RIG+ + G R
Sbjct: 189 LKTVAEELQARYPHATVISAGMSGDLEAAIERGATHLRIGTALLGNR 235
>gi|238878824|gb|EEQ42462.1| hypothetical protein CAWG_00673 [Candida albicans WO-1]
Length = 277
Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats.
Identities = 72/214 (33%), Positives = 101/214 (47%), Gaps = 23/214 (10%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V+LVAVSK+ S I S G F EN +QE K L D++ FIG LQS K
Sbjct: 63 VNLVAVSKLKPSSDIMALYSIGVRHFGENYVQELIAKSQELPN--DIKWHFIGGLQSGKA 120
Query: 88 SEI---VSLFDVIETVSREKTASLLSLEMIK-QSRFLPVYIQVNTGYEIQKSGI----MP 139
++ V+ +ET+ K L +K + + V++Q+NT E QKSG
Sbjct: 121 KDLSKHVANLYAVETIDSLKKCKQLDNTRVKVEGDDINVFLQINTSGEEQKSGFQNLQDI 180
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIARECKLT----- 187
T +F+ L +L GLM I + F L E+ +
Sbjct: 181 ESTVEFL-LSSDCKKLKFLGLMTIGSFNESISNENDKENQDFKKLVEMKQILDSKYNLNL 239
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+LSMGM+ DF+ AI G+TSVR+G+ IFG RP +
Sbjct: 240 ELSMGMSNDFQQAIKQGSTSVRVGTTIFGSRPPR 273
>gi|331084011|ref|ZP_08333118.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
6_1_63FAA]
gi|330402373|gb|EGG81943.1| YggS family pyridoxal phosphate enzyme [Lachnospiraceae bacterium
6_1_63FAA]
Length = 180
Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats.
Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 2/181 (1%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + ++++E + A R ++ V+L+AVSK I L F ENK+QE
Sbjct: 1 MSVCENYKEVEKRVEEACKRAGRKREEVTLIAVSKTKPVSMIEELLPLNVRDFGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + IG LQ NKV IV +I +V + A +S K+
Sbjct: 61 LTAKAEILPSA--LHWHMIGHLQRNKVKYIVDKACIIHSVDSLRLAEEISKAAQKKQVTA 118
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ I+VN E K G+ ++ + + ++GLM I P + NP+ + ++ ++
Sbjct: 119 KILIEVNVAEEESKFGVRTSELLPLIEAISLLPNIAIKGLMTIAPYVENPEENRWIFQKL 178
Query: 181 A 181
Sbjct: 179 K 179
>gi|313617990|gb|EFR90145.1| pyridoxal phosphate enzyme, YggS family [Listeria innocua FSL
S4-378]
Length = 208
Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats.
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 15/204 (7%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81
R + V+LVAV+K +D I G F EN+ K L + D+ +IGS
Sbjct: 1 NRQQADVTLVAVTKTIDVAGITELYDLGIRHFGENRADVFLDKTRELADKDDICWHYIGS 60
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQ+ KV +++ D + ++ R A + K + ++QVN E K G +
Sbjct: 61 LQTRKVKDVLPEIDYLHSLDRSSLAKEIEKRATK---PIKCFLQVNISGEESKHGFSKEE 117
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIARECKL--------TKLS 190
F+ + + GLM + P + K F+ L ++ +E T+LS
Sbjct: 118 ALSFLQE-ADFNFIEIIGLMTMAPITNSDKELHHVFHELKQLQQEIHALQLKNVPCTELS 176
Query: 191 MGMTRDFELAIASGATSVRIGSGI 214
MGMT D+ +AI GAT +R+G +
Sbjct: 177 MGMTNDYGIAITEGATFIRVGRAL 200
>gi|322492041|emb|CBZ27316.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 245
Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats.
Identities = 75/233 (32%), Positives = 110/233 (47%), Gaps = 23/233 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + + R V+L+AV K + + GQ +F EN +QE
Sbjct: 14 TLALNYKAVCDTVAQ--ESGNRR---VTLIAVGKTKSPACLLNLYNLGQRVFGENYVQEL 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIK--Q 116
+K L + D FIG LQSNKV E+ V VI+T+ E AS ++ K
Sbjct: 69 GEKAKELPE--DTMWHFIGHLQSNKVKELLEGVPNLRVIQTIDSENLASKVNEGCRKYRG 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKPH- 173
R L VY+QVNT E KSG P + + + + L ++GLM I +P
Sbjct: 127 GRPLEVYVQVNTSGEETKSGTEPGEATVTLAKYIVDECPLLQLKGLMTIGMPDYTSRPEN 186
Query: 174 FYLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L++ ++ + +LSMGM+ D+ AI G+T+VR+GS IFGER
Sbjct: 187 FECLTKCRQDVSQAVQMAPEDLELSMGMSGDYVNAIRMGSTTVRVGSSIFGER 239
>gi|299821561|ref|ZP_07053449.1| YggS family pyridoxal phosphate enzyme [Listeria grayi DSM 20601]
gi|299817226|gb|EFI84462.1| YggS family pyridoxal phosphate enzyme [Listeria grayi DSM 20601]
Length = 230
Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats.
Identities = 74/225 (32%), Positives = 108/225 (48%), Gaps = 16/225 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ KL KQ+IE + A R DSV L+AV+K VD+ KI G F EN+
Sbjct: 9 MNEQTKLTEVKQRIEAACKRADRSTDSVELIAVTKHVDAAKILDLHQLGLSQFGENRADV 68
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK L+ + +IGSLQ+ KV +++ L + ++ RE A + + +
Sbjct: 69 LVKKAAELKDH-SIDWHYIGSLQTRKVRQVLPLISCLHSLDRESLAVEIEKRAETE---I 124
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
P ++QVN E K G P + FV ++ V GLM + P + + F L
Sbjct: 125 PCFLQVNITGEASKHGFSPEEALAFVNRF-DFQKIKVIGLMTMAPLTEDDAIIRQAFTDL 183
Query: 178 SEI--------ARECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ + R+ KLSMGMT DFE+AI GAT +RIG +
Sbjct: 184 AALGQAIQKLAVRQAPCLKLSMGMTNDFEIAIEEGATHIRIGRAL 228
>gi|239622623|ref|ZP_04665654.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|239514620|gb|EEQ54487.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
Length = 271
Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats.
Identities = 66/250 (26%), Positives = 104/250 (41%), Gaps = 34/250 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + +A R SV L+A +K D +I A+ G EN+ QE
Sbjct: 19 ITDGVHRVLDRIAEAESVAGREAGSVHLLAATKTRDVGEILAAIDAGVHRIGENRPQEII 78
Query: 63 KKWIPLRKEW----------------------DVQLRFIGSLQSNKVSEIVSLFDVIETV 100
K L + + IG LQ+NK+S+++ + D IE+V
Sbjct: 79 VKAPGLARLLAERGYSLGVVETEGGAAADAAHHIPFHLIGQLQANKISKVLPVVDTIESV 138
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ A ++ + + V ++VN E KSG P+ D L ++GL
Sbjct: 139 DSIELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMDGLRLQGL 198
Query: 161 MCIPPAMGNPKPH---FYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSV 208
M I + + + F L + T+LSMGMT D AI G+T V
Sbjct: 199 MTIGAHVDDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMTYAIEEGSTIV 258
Query: 209 RIGSGIFGER 218
R+G+ IFGER
Sbjct: 259 RVGTAIFGER 268
>gi|157136630|ref|XP_001663798.1| proline synthetase associated protein [Aedes aegypti]
gi|108880984|gb|EAT45209.1| proline synthetase associated protein [Aedes aegypti]
Length = 258
Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats.
Identities = 73/242 (30%), Positives = 109/242 (45%), Gaps = 29/242 (11%)
Query: 10 FKQKIENSAILAKRPKDSVS-----LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+Q + + ++ LVAVSK + I S GQ F EN +QE +K
Sbjct: 15 IRQTLAKIDEAFGKRSQTIKAPKPLLVAVSKTKPIELILDGYSIGQRDFGENYVQELIEK 74
Query: 65 WIP---LRKEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIK---- 115
L D++ FIG LQ+NK+++IV+L +I+TV K A L+ K
Sbjct: 75 ANDPRILEHCKDIRWHFIGHLQTNKINKIVNLPNLHMIQTVHNAKLAEGLNKAWEKTKVE 134
Query: 116 --QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN--- 169
+ + L V IQ+NT E +K+G P + + + L G+M I +
Sbjct: 135 KPEKQQLNVLIQINTSGEDEKNGTQPAEAVNLYRFVTEKCPNLKCHGVMTIGRFGHDYST 194
Query: 170 -PKPHFYLLSE--------IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
P P F L + R+ ++SMGM+ DF AI G+T VR+GS IFG R
Sbjct: 195 GPNPDFIELMKCHQDICSTFERDPAELQVSMGMSDDFVQAIEMGSTIVRVGSSIFGARAK 254
Query: 221 QT 222
+
Sbjct: 255 KN 256
>gi|229819925|ref|YP_002881451.1| alanine racemase domain protein [Beutenbergia cavernae DSM 12333]
gi|229565838|gb|ACQ79689.1| alanine racemase domain protein [Beutenbergia cavernae DSM 12333]
Length = 230
Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats.
Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 14/231 (6%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + L +++I ++A + R + L+ K +R A+S G + N++Q
Sbjct: 1 MTDVRATLAAARERIADAAGVVGRDPAEIDLLLAVKTQPVAAMRAAISAGGHLLGHNRVQ 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E L ++ IG LQSNKV ++ ++TV E A L R
Sbjct: 61 EMAASGPELADLPH-EMHLIGHLQSNKVRAALAWATCVQTVDDEALAVRLDRVAGDLGRS 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
L V++QVNT E KSG P + L + G M I + + +
Sbjct: 120 LDVFVQVNTSGETTKSGTTPEEAHGLARRIGALPSLRLRGFMTIGANSTDVDVVRASYAS 179
Query: 177 LSEIARECKLT---------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ + + + +LSMGM+ D E+A+A+GAT VR+G+ +FG R
Sbjct: 180 LARVRDDVVASGDEGTGLARELSMGMSGDLEIAVAAGATMVRLGTAVFGAR 230
>gi|225870031|ref|YP_002745978.1| hypothetical protein SEQ_0622 [Streptococcus equi subsp. equi 4047]
gi|225699435|emb|CAW92926.1| conserved hypothetical protein [Streptococcus equi subsp. equi
4047]
Length = 223
Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + I + A RP++SVS++AV+K VD + G AEN++ +
Sbjct: 1 MDLQKNKDIVFENIRLATQAANRPENSVSVIAVTKYVDKAVAGQLIDMGIEHIAENRIDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ V FIG+LQ KV E+++ D + K A + +
Sbjct: 61 FLDKYEALKDR-QVTWHFIGTLQRRKVKEVINKVDYFHALDSVKLALEIEKRA---DHPV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K G + + + +L++ G+M + P + + F
Sbjct: 117 KCFLQVNISEEESKHGFKIAELDAAIEEISKMEKLHLVGIMTMAPIDASQQELRSIFQKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ + + T+LSMGM+ D+ +AI G+T VRIG+ F
Sbjct: 177 NQLRKNLQSKKRKNMPFTELSMGMSNDYPIAIQEGSTFVRIGTSFF 222
>gi|195977733|ref|YP_002122977.1| pyridoxaL 5'-phosphate dependent enzyme class III family
[Streptococcus equi subsp. zooepidemicus MGCS10565]
gi|195974438|gb|ACG61964.1| pyridoxaL 5'-phosphate dependent enzyme class III family
[Streptococcus equi subsp. zooepidemicus MGCS10565]
Length = 224
Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + I + A RP++SVS++AV+K VD + G AEN++ +
Sbjct: 2 MDLQKNKDIVFENIRLATQAANRPENSVSVIAVTKYVDKAVAGQLIDMGIEHIAENRIDK 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ V FIG+LQ KV E+++ D + K A + +
Sbjct: 62 FLDKYEALKDR-QVTWHFIGTLQRRKVKEVINKVDYFHALDSVKLALEIEKRA---DHPV 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K G + + + +L++ G+M + P + + F
Sbjct: 118 KCFLQVNISEEESKHGFKIAELDAAIEEISKMEKLHLVGIMTMAPIDASQQELRSIFQKA 177
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ + + T+LSMGM+ D+ +AI G+T VRIG+ F
Sbjct: 178 NQLRKNLQSKKRKNMPFTELSMGMSNDYPIAIQEGSTFVRIGTSFF 223
>gi|242309417|ref|ZP_04808572.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
gi|239523988|gb|EEQ63854.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
Length = 223
Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats.
Identities = 69/220 (31%), Positives = 109/220 (49%), Gaps = 10/220 (4%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
L KIE + I R + + LVAVSK V ++I+ CGQ F ENK+Q+
Sbjct: 5 QENLINAIDKIEKARISVDRHR-IIRLVAVSKYVSHQEIQALYECGQRAFGENKVQDLSY 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD-VIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ FIG+LQSNK++ ++ L + ++ A+ L + +++ L
Sbjct: 64 KSQTLESLP-LEWHFIGNLQSNKINALLKLKPFMFHSLHSLSLANELQKRLERENLTLKT 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLS 178
+Q+N+ E KSG P + ++ + + + GLM I + K F L S
Sbjct: 123 LLQINSAKETTKSGFDPESAYESYLQIQETCPNIKLCGLMSIGAHTQDTKIIQNSFELTS 182
Query: 179 EIARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+I + + LSMGM+ DFELAI G+ VR+GS +F
Sbjct: 183 KIYEKLQKNGANILSMGMSGDFELAIKCGSNCVRLGSTLF 222
>gi|145296115|ref|YP_001138936.1| hypothetical protein cgR_2035 [Corynebacterium glutamicum R]
gi|140846035|dbj|BAF55034.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 234
Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats.
Identities = 65/229 (28%), Positives = 104/229 (45%), Gaps = 15/229 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +LQ + +I+ + RP+ SV L+ V+K + I++ G EN+ QEA+
Sbjct: 7 LQVRLQQVQARIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQELGVTAVGENREQEAR 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL----SLEMIKQSR 118
K + L D+ IG +QS K + I + +V EK A L +L + + R
Sbjct: 67 AKALELP---DMDFHMIGQIQSKKANSIARWSAAVHSVDSEKIAEALGRGVALALERGDR 123
Query: 119 F---LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
LP +IQ++ + + G +Q L EGLMC+PP +P+ F
Sbjct: 124 TSDELPCFIQLSLDGDPSRGGTPLSQVTQLADCISDTTHLRFEGLMCVPPLGWDPEKAFS 183
Query: 176 LLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ + + S GM+ D AI G+T VR+G+ I G RP
Sbjct: 184 QARDVLSGLEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRP 232
>gi|87303083|ref|ZP_01085881.1| hypothetical protein WH5701_06251 [Synechococcus sp. WH 5701]
gi|87282250|gb|EAQ74210.1| hypothetical protein WH5701_06251 [Synechococcus sp. WH 5701]
Length = 215
Score = 221 bits (565), Expect = 4e-56, Method: Composition-based stats.
Identities = 63/220 (28%), Positives = 102/220 (46%), Gaps = 13/220 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L +L+ ++++ L+AVSK + ++R A++ G F E++LQEA
Sbjct: 5 ALAQRLETLQEQL----------PPQARLLAVSKGQPAARLREAVALGLRSFGESRLQEA 54
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L + + FIG LQ+NK ++ F I +V A L ++
Sbjct: 55 QAKQAELAELEPLDWHFIGRLQANKARGVLRHFGTIHSVDSLPLAERLQRIAAEEQLSPR 114
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE-- 179
V+ QV + K+G P + + R L GLM I P F L +
Sbjct: 115 VFFQVKLRPDPGKTGFEPRELEQCWPRLRALEPLVPVGLMTIAPLGLEADQRFGLFQDCA 174
Query: 180 -IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A L +LSMGM+ D+ A+ +G+T VR+GS +FG R
Sbjct: 175 ALAATLGLKELSMGMSSDWPEAVRAGSTWVRLGSALFGPR 214
>gi|315924167|ref|ZP_07920393.1| cell division protein YlmE [Pseudoramibacter alactolyticus ATCC
23263]
gi|315622569|gb|EFV02524.1| cell division protein YlmE [Pseudoramibacter alactolyticus ATCC
23263]
Length = 232
Score = 221 bits (565), Expect = 5e-56, Method: Composition-based stats.
Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 24/225 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + ++ DSV L+AV+K + + + G + EN +Q+
Sbjct: 16 IARNVAKVQSQL----------PDSVRLIAVTKKHTIAETQAVVDAGVMDLGENHVQDLI 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
KK L + D+ FIG LQ+NKV ++ +I +VS K + E K++ +
Sbjct: 66 KK--KLEIKGDIHWHFIGHLQTNKVKYLIGEVAMIHSVSSLKLLKKIEQESAKKNLVTNI 123
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
+Q N E KSG N+ + +N+ GLMC+ P N F L E
Sbjct: 124 LLQFNLAEEATKSGFSANELTKATEEVARLSHINLRGLMCMGPMTENSDEIHKIFGQLKE 183
Query: 180 IARECKLTK---------LSMGMTRDFELAIASGATSVRIGSGIF 215
+ + K+T LSMGMT D+ +AIA GAT VR+G IF
Sbjct: 184 MYDKIKITYQNGENQIDCLSMGMTNDYPIAIAEGATCVRVGRKIF 228
>gi|119960860|ref|YP_947475.1| alanine racemase N-terminal domain-containing protein [Arthrobacter
aurescens TC1]
gi|119947719|gb|ABM06630.1| putative alanine racemase, N-terminal domain protein [Arthrobacter
aurescens TC1]
Length = 252
Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats.
Identities = 66/230 (28%), Positives = 107/230 (46%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L ++L + +++IE + A R D L+ V+K + +R ++ G EN+ QEA
Sbjct: 23 LADRLGLVRRRIEAAVHAAGR-TDPPKLIVVTKFHPAADVRRLVALGVTDVGENRDQEAA 81
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK----TASLLSLEMIKQSR 118
K + L DV+ FIG LQSNK +V ++++ R + ++ E R
Sbjct: 82 SKSVELAD-VDVRWHFIGQLQSNKAKSVVKYAHSVQSIDRPQVVDALVKAIAREKGATGR 140
Query: 119 F-LPVYIQVNTGYE--IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
L +IQV+ + + G P+ + L + GLM + P +P F
Sbjct: 141 SDLDCFIQVSLDDDAGAHRGGADPSDVEVLAEKIESADGLRLSGLMAVAPLGADPNAAFE 200
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ I+ + T +S GM++D E A+ GAT +RIGS I G RP
Sbjct: 201 KLAGISEALRAVHPAATGISAGMSQDLEAAVTFGATHLRIGSDILGSRPA 250
>gi|82750795|ref|YP_416536.1| hypothetical protein SAB1052 [Staphylococcus aureus RF122]
gi|82656326|emb|CAI80741.1| conserved hypothetical protein [Staphylococcus aureus RF122]
Length = 224
Score = 221 bits (564), Expect = 5e-56, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + LQ +I + + +++AV+K V ++ + A G F EN+L+
Sbjct: 1 MRVKDNLQQISTQINDKSEKNNFSTK-PNVIAVTKYVTIERAKEAYEAGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L D + FIGSLQS KV ++++ D + R A ++ +
Sbjct: 60 FFQKKEALPS--DAVIHFIGSLQSRKVKDVINYVDYFHALDRLSLAKEINKRAE---HKI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K GI F+ ++ ++ + GLM + P + + F L
Sbjct: 115 KCFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKVEIVGLMTMAPLTDDEAYIRSLFKQL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E + +LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 175 RLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVDEGATFVRIGTKLVGE 222
>gi|108804324|ref|YP_644261.1| hypothetical protein Rxyl_1487 [Rubrobacter xylanophilus DSM 9941]
gi|108765567|gb|ABG04449.1| Protein of unknown function UPF0001 [Rubrobacter xylanophilus DSM
9941]
Length = 240
Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats.
Identities = 52/223 (23%), Positives = 99/223 (44%), Gaps = 16/223 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L++ ++ I + + R +D ++ +K + ++I G + EN+ Q+
Sbjct: 10 IRERLKLVQENISRALERSGR-RDRPRVLVATKYYEPEQISALREAGVRLVGENRAQDLI 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + + FIG LQ K +V +I +V + L+ + V
Sbjct: 69 RKQELFGDAF--EWHFIGHLQRRKAKLVVPRVSLIHSVDSVRLVEELARRAPEGG--TDV 124
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
+QVN E K G+ P + + + ++ V G M + P + +P+ F L E
Sbjct: 125 LVQVNVSGEESKYGVSPGEVERLLEAAAASGKVRVRGFMTLAPLVEDPEDVRYVFAQLRE 184
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGI 214
I + L++LSMGM+ D+ +A+ GAT VR+G +
Sbjct: 185 IRDRLRGSWRPHFDLSELSMGMSNDYPVAVEEGATLVRVGRTL 227
>gi|315613573|ref|ZP_07888480.1| YggS family pyridoxal phosphate enzyme [Streptococcus sanguinis
ATCC 49296]
gi|315314264|gb|EFU62309.1| YggS family pyridoxal phosphate enzyme [Streptococcus sanguinis
ATCC 49296]
Length = 223
Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L ++ Q+I +++ A R D+VS++AV+K VD + L G EN++ +
Sbjct: 1 MNLKKNTELVFQQIADASQEANRALDAVSVIAVTKYVDVQTAEALLPLGVRHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L K++ V IG+LQ KV E++ D + K A + +
Sbjct: 61 FLEKYQAL-KDYPVTWHLIGTLQRRKVKEVIPYVDYFHALDSLKLAQEIQKR---TDHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K G + + + + Q+ GLM + P + K F
Sbjct: 117 KCFLQVNISGEESKHGFSKEELLELLPELAKLDQIEYVGLMTMAPFEADSDDLKEIFKDT 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ E + +T+LSMGM+RDF+ AI G+T VRIG+ F
Sbjct: 177 QALQAEIREKQIPNIPMTELSMGMSRDFKEAIQFGSTFVRIGTAFF 222
>gi|261338600|ref|ZP_05966484.1| pyridoxal phosphate enzyme, YggS family [Bifidobacterium gallicum
DSM 20093]
gi|270276641|gb|EFA22495.1| pyridoxal phosphate enzyme, YggS family [Bifidobacterium gallicum
DSM 20093]
Length = 269
Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats.
Identities = 68/244 (27%), Positives = 108/244 (44%), Gaps = 28/244 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + ++ + A RP+ V L+A +K D ++ A+ G + EN+ QE
Sbjct: 23 ITDNVHRALDQLAQAVADAGRPEGCVQLLAATKTRDVGEVHAAIQAGIRLIGENRPQEIL 82
Query: 63 KKWIPLRK----------------EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA 106
K LR+ DV L IG LQSNK+ +I+ +VIE+V A
Sbjct: 83 AKIDGLRELCAADGLQVGRQDDDAAPDVPLHLIGQLQSNKIGKILPFTNVIESVDSLDLA 142
Query: 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA 166
++ + + + V ++VN E KSG P Q +D + + GLM +
Sbjct: 143 QKIARRAVAHTMTVDVLLEVNESGETSKSGCAPEQARDIAGAIGALDGVRLVGLMTVGAH 202
Query: 167 MGNP---KPHFYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+ + + F L E+ E + +LSMGM+ D AI G+T VR+G I
Sbjct: 203 VDDEAIVRQGFAHLRELRDELVASGEQGTDECLQLSMGMSGDAAWAIDEGSTQVRLGRAI 262
Query: 215 FGER 218
FGER
Sbjct: 263 FGER 266
>gi|88856516|ref|ZP_01131173.1| hypothetical protein A20C1_02184 [marine actinobacterium PHSC20C1]
gi|88814170|gb|EAR24035.1| hypothetical protein A20C1_02184 [marine actinobacterium PHSC20C1]
Length = 228
Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats.
Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 8/223 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
SL +L +I ++A A R S++ + ++K + +R G F EN+ QEA
Sbjct: 6 SLEQRLADIDGQIADAARAASRDLSSITRIVITKFHPASLVRELYGLGVRDFGENRHQEA 65
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L D + F+G LQS K ++ S + +V R+ + LS E L
Sbjct: 66 QPKAAELVD-LDARWSFVGQLQSKKARQVRSYCHAVHSVDRDSLITALSSE--DAVVPLD 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V+IQVN + + G++P++ + F + + GLM + P +P+P F L ++
Sbjct: 123 VFIQVNLTDDPARGGVVPSELEAFADRVANASGIELRGLMGVAPLEVDPRPAFAALRSLS 182
Query: 182 RECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
LSMGM+ DF AIA GAT +RIG+ I G+RP
Sbjct: 183 ERIGAQHPHARALSMGMSGDFAQAIAEGATHLRIGTAITGKRP 225
>gi|315194074|gb|EFU24467.1| hypothetical protein CGSSa00_05193 [Staphylococcus aureus subsp.
aureus CGS00]
Length = 224
Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + LQ +I + + +++AV+K V ++ + A G F EN+L+
Sbjct: 1 MRVKDNLQQISTQINDKSEKNNFSTK-PNVIAVTKYVTIERAKEAYEAGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L D + FIGSLQS KV ++++ D + R A ++ +
Sbjct: 60 FFQKKEALPS--DAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINKRAE---HKI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K GI F+ ++ ++ + GLM + P + + F L
Sbjct: 115 KCFLQVNVSGETSKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E + +LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 175 RLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGE 222
>gi|258423768|ref|ZP_05686654.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9635]
gi|257846000|gb|EEV70028.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9635]
Length = 224
Score = 221 bits (564), Expect = 6e-56, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + LQ +I + + +++AV+K V ++ + A G F EN+L+
Sbjct: 1 MRVKDNLQQISTQINDKSKKNNFSTK-PNVIAVTKYVTIERAKEAYEAGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L D + FIGSLQS KV ++++ D + R A ++ +
Sbjct: 60 FFQKKEALPS--DAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINKRAE---HKI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K GI F+ ++ ++ + GLM + P + + F L
Sbjct: 115 KCFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E + +LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 175 RLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGE 222
>gi|327441146|dbj|BAK17511.1| predicted enzyme with a TIM-barrel fold [Solibacillus silvestris
StLB046]
Length = 222
Score = 221 bits (563), Expect = 7e-56, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 109/228 (47%), Gaps = 18/228 (7%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + L+ + +IE + + +V ++AV+K VD + A+ G + EN+ +
Sbjct: 1 MTKIIENLKQIQHQIEIAKQRVN-AQQTVEIIAVTKEVDVNRTEEAIEAGLIHLGENRPE 59
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + V +IGSLQ+ KV +++ D + ++ R A + K+
Sbjct: 60 GLLNKLDSINSA--VSWHYIGSLQTRKVKQVIDQIDYLHSLDRLSLAEEIEKRATKR--- 114
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ ++QVN E K G+ Q DFV Q ++ V GLM + P + + F
Sbjct: 115 VKCFVQVNVSGEESKHGLTREQALDFVKQLEQFPKIEVVGLMTMAPFTEDETMIRQVFKQ 174
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L ++ +E T+LSMGM+ D+E+A+ GAT VRIG+ + G
Sbjct: 175 LKQLQQEVSQLNIPNVPCTELSMGMSNDYEIAVEEGATFVRIGTALVG 222
>gi|317009668|gb|ADU80248.1| hypothetical protein HPIN_05220 [Helicobacter pylori India7]
Length = 222
Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats.
Identities = 71/220 (32%), Positives = 108/220 (49%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + R V +VAVSK + I+ +C Q F EN++Q+ K
Sbjct: 5 SQRIDTLITKIEKARTAYSR-HHIVKIVAVSKNASLEAIQHYYNCSQRAFGENRVQDLKT 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ ++SL ++ ++ K A + L
Sbjct: 64 KMHSL-EHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG+MP +T + + L + GLMCI + + F
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKHLKLRGLMCIGAHADDEKKIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDRLKNASILSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|15924178|ref|NP_371712.1| hypothetical protein SAV1188 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15926771|ref|NP_374304.1| hypothetical protein SA1031 [Staphylococcus aureus subsp. aureus
N315]
gi|49483351|ref|YP_040575.1| hypothetical protein SAR1164 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|57651758|ref|YP_186064.1| hypothetical protein SACOL1201 [Staphylococcus aureus subsp. aureus
COL]
gi|151221310|ref|YP_001332132.1| hypothetical protein NWMN_1098 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156979509|ref|YP_001441768.1| hypothetical protein SAHV_1178 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509362|ref|YP_001575021.1| hypothetical protein USA300HOU_1125 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221140640|ref|ZP_03565133.1| hypothetical protein SauraJ_03256 [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253314958|ref|ZP_04838171.1| hypothetical protein SauraC_02035 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|255005975|ref|ZP_05144576.2| hypothetical protein SauraM_05880 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257425242|ref|ZP_05601667.1| YlmE protein [Staphylococcus aureus subsp. aureus 55/2053]
gi|257427902|ref|ZP_05604300.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430535|ref|ZP_05606917.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257433296|ref|ZP_05609654.1| YlmE protein [Staphylococcus aureus subsp. aureus E1410]
gi|257436138|ref|ZP_05612185.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus M876]
gi|257795756|ref|ZP_05644735.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9781]
gi|258415980|ref|ZP_05682250.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|258419727|ref|ZP_05682694.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9719]
gi|258438769|ref|ZP_05689922.1| YlmE protein [Staphylococcus aureus A9299]
gi|258444525|ref|ZP_05692854.1| YlmE protein [Staphylococcus aureus A8115]
gi|258447642|ref|ZP_05695786.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A6300]
gi|258449484|ref|ZP_05697587.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A6224]
gi|258451886|ref|ZP_05699907.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A5948]
gi|258454863|ref|ZP_05702827.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A5937]
gi|262048761|ref|ZP_06021643.1| hypothetical protein SAD30_1591 [Staphylococcus aureus D30]
gi|262051688|ref|ZP_06023907.1| hypothetical protein SA930_1515 [Staphylococcus aureus 930918-3]
gi|269202803|ref|YP_003282072.1| hypothetical protein SAAV_1159 [Staphylococcus aureus subsp. aureus
ED98]
gi|282892674|ref|ZP_06300909.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A8117]
gi|282903740|ref|ZP_06311628.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus C160]
gi|282905504|ref|ZP_06313359.1| pyridoxal phosphate enzyme YggS family protein [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282908480|ref|ZP_06316310.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282910761|ref|ZP_06318564.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282913964|ref|ZP_06321751.1| YlmE protein [Staphylococcus aureus subsp. aureus M899]
gi|282916438|ref|ZP_06324200.1| pyridoxal phosphate enzyme [Staphylococcus aureus subsp. aureus
D139]
gi|282918886|ref|ZP_06326621.1| pyridoxal phosphate enzyme [Staphylococcus aureus subsp. aureus
C427]
gi|282919969|ref|ZP_06327698.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9765]
gi|282924009|ref|ZP_06331685.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus C101]
gi|282929233|ref|ZP_06336808.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A10102]
gi|283770250|ref|ZP_06343142.1| YlmE [Staphylococcus aureus subsp. aureus H19]
gi|283957931|ref|ZP_06375382.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus A017934/97]
gi|284024112|ref|ZP_06378510.1| hypothetical protein Saura13_05954 [Staphylococcus aureus subsp.
aureus 132]
gi|293500997|ref|ZP_06666848.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus 58-424]
gi|293509955|ref|ZP_06668664.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus M809]
gi|293526544|ref|ZP_06671229.1| YlmE protein [Staphylococcus aureus subsp. aureus M1015]
gi|295427674|ref|ZP_06820306.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|296276136|ref|ZP_06858643.1| hypothetical protein SauraMR_07292 [Staphylococcus aureus subsp.
aureus MR1]
gi|297591368|ref|ZP_06950006.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus MN8]
gi|304381252|ref|ZP_07363905.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|4009493|gb|AAC95460.1| YlmE [Staphylococcus aureus]
gi|13700987|dbj|BAB42283.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14246958|dbj|BAB57350.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|49241480|emb|CAG40166.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|57285944|gb|AAW38038.1| conserved hypothetical protein TIGR00044 [Staphylococcus aureus
subsp. aureus COL]
gi|150374110|dbj|BAF67370.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156721644|dbj|BAF78061.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|160368171|gb|ABX29142.1| hypothetical protein USA300HOU_1125 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|257271699|gb|EEV03837.1| YlmE protein [Staphylococcus aureus subsp. aureus 55/2053]
gi|257274743|gb|EEV06230.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278663|gb|EEV09282.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257281389|gb|EEV11526.1| YlmE protein [Staphylococcus aureus subsp. aureus E1410]
gi|257284420|gb|EEV14540.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus M876]
gi|257789728|gb|EEV28068.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9781]
gi|257839316|gb|EEV63790.1| conserved hypothetical protein [Staphylococcus aureus A9763]
gi|257844312|gb|EEV68694.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9719]
gi|257848028|gb|EEV72021.1| YlmE protein [Staphylococcus aureus A9299]
gi|257850018|gb|EEV73971.1| YlmE protein [Staphylococcus aureus A8115]
gi|257853833|gb|EEV76792.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A6300]
gi|257857472|gb|EEV80370.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A6224]
gi|257860494|gb|EEV83321.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A5948]
gi|257863246|gb|EEV86010.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A5937]
gi|259160423|gb|EEW45448.1| hypothetical protein SA930_1515 [Staphylococcus aureus 930918-3]
gi|259163217|gb|EEW47777.1| hypothetical protein SAD30_1591 [Staphylococcus aureus D30]
gi|262075093|gb|ACY11066.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ED98]
gi|269940682|emb|CBI49061.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282313981|gb|EFB44373.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus C101]
gi|282316696|gb|EFB47070.1| pyridoxal phosphate enzyme [Staphylococcus aureus subsp. aureus
C427]
gi|282319878|gb|EFB50226.1| pyridoxal phosphate enzyme [Staphylococcus aureus subsp. aureus
D139]
gi|282322032|gb|EFB52356.1| YlmE protein [Staphylococcus aureus subsp. aureus M899]
gi|282325366|gb|EFB55675.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282327542|gb|EFB57825.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282330796|gb|EFB60310.1| pyridoxal phosphate enzyme YggS family protein [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282589192|gb|EFB94289.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A10102]
gi|282594685|gb|EFB99669.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9765]
gi|282595358|gb|EFC00322.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus C160]
gi|282764671|gb|EFC04796.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A8117]
gi|283460397|gb|EFC07487.1| YlmE [Staphylococcus aureus subsp. aureus H19]
gi|283790080|gb|EFC28897.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus A017934/97]
gi|285816870|gb|ADC37357.1| protein of unknown function [Staphylococcus aureus 04-02981]
gi|290920616|gb|EFD97679.1| YlmE protein [Staphylococcus aureus subsp. aureus M1015]
gi|291096002|gb|EFE26263.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus 58-424]
gi|291467405|gb|EFF09922.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus M809]
gi|295128032|gb|EFG57666.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|297576254|gb|EFH94970.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus MN8]
gi|302332793|gb|ADL22986.1| alanine racemase [Staphylococcus aureus subsp. aureus JKD6159]
gi|302751011|gb|ADL65188.1| alanine racemase [Staphylococcus aureus subsp. aureus str. JKD6008]
gi|304340235|gb|EFM06176.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|312438435|gb|ADQ77506.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus TCH60]
gi|312829582|emb|CBX34424.1| alanine racemase, N-terminal domain protein [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|315130979|gb|EFT86963.1| hypothetical protein CGSSa03_05529 [Staphylococcus aureus subsp.
aureus CGS03]
gi|315196918|gb|EFU27261.1| hypothetical protein CGSSa01_04090 [Staphylococcus aureus subsp.
aureus CGS01]
gi|329725028|gb|EGG61524.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus 21189]
gi|329727366|gb|EGG63822.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus 21172]
Length = 224
Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + LQ +I + + +++AV+K V ++ + A G F EN+L+
Sbjct: 1 MRVKDNLQQISTQINDKSEKNNFSTK-PNVIAVTKYVTIERAKEAYEAGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L D + FIGSLQS KV ++++ D + R A ++ +
Sbjct: 60 FFQKKEALPS--DAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINKRAE---HKI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K GI F+ ++ ++ + GLM + P + + F L
Sbjct: 115 KCFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E + +LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 175 RLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGE 222
>gi|319787656|ref|YP_004147131.1| alanine racemase domain protein [Pseudoxanthomonas suwonensis 11-1]
gi|317466168|gb|ADV27900.1| alanine racemase domain protein [Pseudoxanthomonas suwonensis 11-1]
Length = 253
Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats.
Identities = 75/228 (32%), Positives = 108/228 (47%), Gaps = 12/228 (5%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+LQ +IE +A A RP L+AVSK+ + + + GQ F EN +QE
Sbjct: 28 AARLQDVLARIEAAAKAAGRP--CPRLLAVSKLQPAGAVAALAAAGQRAFGENYVQEGAA 85
Query: 64 KWIPLRKEWD--VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D ++ IG LQSNK + F + +V R L+ + L
Sbjct: 86 KRQALDPALDAGLEWHLIGHLQSNKAAVAARTFGWVHSVDRTSVIDALAARRDPAAAPLN 145
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
V +QVN E K G P + + + +L + GLM IP P + +P F +
Sbjct: 146 VLLQVNVEGEEGKGGCRPGEVEALAAAVAAQPRLALRGLMAIPVPHPDPEDRRPAFRAMK 205
Query: 179 EI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++ AR + LSMGM+ DF +AIA GAT VRIG+ +FG RP +
Sbjct: 206 QLFDALAARHPGVDTLSMGMSDDFAVAIAEGATLVRIGTALFGPRPPR 253
>gi|269215871|ref|ZP_06159725.1| pyridoxal phosphate enzyme, YggS family [Slackia exigua ATCC
700122]
gi|269130821|gb|EEZ61897.1| pyridoxal phosphate enzyme, YggS family [Slackia exigua ATCC
700122]
Length = 232
Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L ++ + ++ ++ + R +V ++ VSK VD + A++ G F EN+ E
Sbjct: 1 MALKDRYDAIRTQVADACAASGRDASAVRIIGVSKTVDVDAVAEAVAAGIHDFGENRPDE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K E + FIG++QS + ++V +I ++ R A +
Sbjct: 61 LARKHDAFPSE---RWHFIGNIQSRHLKDVVGRACLIHSLYRPSHADKIDRLADAAGIVQ 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM--GNPKPHFYLLS 178
V I+VN E K G+ ++ + C + V GLM + P F L+
Sbjct: 118 DVLIEVN-DGEENKQGLSASELPAMIEHCFGLAHVRVRGLMMMAPKDSPEEADASFARLA 176
Query: 179 EIARE-----------CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
I E L +LSMGM+ D+ AI G+T VRIG IF
Sbjct: 177 CIREEMRQRFGAQGLTLDLDELSMGMSDDYLQAIPYGSTMVRIGRAIF 224
>gi|293365889|ref|ZP_06612592.1| cell division protein YlmE [Streptococcus oralis ATCC 35037]
gi|307702293|ref|ZP_07639251.1| alanine racemase, N-terminal domain protein [Streptococcus oralis
ATCC 35037]
gi|331265953|ref|YP_004325583.1| hypothetical protein SOR_0580 [Streptococcus oralis Uo5]
gi|291315567|gb|EFE56017.1| cell division protein YlmE [Streptococcus oralis ATCC 35037]
gi|307624096|gb|EFO03075.1| alanine racemase, N-terminal domain protein [Streptococcus oralis
ATCC 35037]
gi|326682625|emb|CBZ00242.1| conserved hypothetical protein [Streptococcus oralis Uo5]
Length = 223
Score = 221 bits (563), Expect = 8e-56, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L ++ Q+I +++ A R D+VS++AV+K VD + L G EN++ +
Sbjct: 1 MNLKKNTELVFQQIADASQEANRALDAVSVIAVTKYVDVQTAEALLPLGVRHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L K++ V IG+LQ KV E++ D + K A + +
Sbjct: 61 FLEKYQAL-KDYPVTWHLIGTLQRRKVKEVIPYVDYFHALDSLKLAQEIQKR---TDHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K G + + + + Q+ GLM + P + K F
Sbjct: 117 KCFLQVNISGEESKHGFSKEELLELLPELAKLDQIEYVGLMTMAPFEADSDELKEIFKDT 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ E + +T+LSMGM+RDF+ AI G+T VRIG+ F
Sbjct: 177 QALQAEIREKQIPNMPMTELSMGMSRDFKEAIQFGSTFVRIGTAFF 222
>gi|262341190|ref|YP_003284045.1| alanine racemase domain-containing protein [Blattabacterium sp.
(Blattella germanica) str. Bge]
gi|262272527|gb|ACY40435.1| alanine racemase domain-containing protein [Blattabacterium sp.
(Blattella germanica) str. Bge]
Length = 218
Score = 220 bits (562), Expect = 9e-56, Method: Composition-based stats.
Identities = 59/202 (29%), Positives = 96/202 (47%), Gaps = 10/202 (4%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
++ +VAVSK + I G F EN +QE K+ L K D++ IG +QS
Sbjct: 14 PKNIKIVAVSKNQNVSSIEKLYKLGHKDFGENYVQEMMDKYKKLPK--DIRWHMIGRIQS 71
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK+ I+ +I +V + + L++ +K R + +Q+ E KSGI + D
Sbjct: 72 NKLKYIIPFIHLIHSVQKLEQIQLINKIALKYGRRINCLLQIKICNEKSKSGITDQEFYD 131
Query: 145 FVI--LCRQKYQLNVEGLMCIPPAMGNPK--PHFYLLSEIARECK----LTKLSMGMTRD 196
+ + + + G+M + K F L + +C+ LSMGM+RD
Sbjct: 132 ILENKTYQSMKNVKIVGIMGMASFQELTKIHNEFGYLRKFYDKCQKKYGFYILSMGMSRD 191
Query: 197 FELAIASGATSVRIGSGIFGER 218
+ +AI G+T VR+G+ IFG R
Sbjct: 192 YNIAIQYGSTIVRLGTSIFGNR 213
>gi|296453405|ref|YP_003660548.1| alanine racemase domain-containing protein [Bifidobacterium longum
subsp. longum JDM301]
gi|296182836|gb|ADG99717.1| alanine racemase domain protein [Bifidobacterium longum subsp.
longum JDM301]
Length = 275
Score = 220 bits (562), Expect = 9e-56, Method: Composition-based stats.
Identities = 66/250 (26%), Positives = 103/250 (41%), Gaps = 34/250 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I S +A R SV L+A +K D +I A+ G EN+ QE
Sbjct: 23 IADGVHRVLDRIAESESVAGREAGSVHLLAATKTRDVGEILAAIDAGVHRIGENRPQEIV 82
Query: 63 KKWIPLRKEW----------------------DVQLRFIGSLQSNKVSEIVSLFDVIETV 100
K L + + IG LQ+NK+ +++ D IE+V
Sbjct: 83 VKAPGLARLLAERGYSLGVVETEGGAAADAAHHIPFHLIGQLQANKIGKVLPAVDTIESV 142
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ A ++ + + V ++VN E KSG P+ D L+++GL
Sbjct: 143 DSIELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLHLQGL 202
Query: 161 MCIPPAMGNPKPH---FYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSV 208
M I + + + F L + T+LSMGMT D AI G+T V
Sbjct: 203 MTIGAHVDDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMAYAIEEGSTIV 262
Query: 209 RIGSGIFGER 218
R+G+ IFGER
Sbjct: 263 RVGTAIFGER 272
>gi|322375674|ref|ZP_08050186.1| pyridoxal phosphate enzyme, YggS family [Streptococcus sp. C300]
gi|321279382|gb|EFX56423.1| pyridoxal phosphate enzyme, YggS family [Streptococcus sp. C300]
Length = 223
Score = 220 bits (562), Expect = 9e-56, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L ++ Q+I +++ A R D+VS++AV+K VD + L G EN++ +
Sbjct: 1 MNLKKNTELVFQQIADASQEANRALDAVSVIAVTKYVDVQTAEALLPLGVRHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L K++ V IG+LQ KV E++ D + K A + +
Sbjct: 61 FLEKYQAL-KDYPVTWHLIGTLQRRKVKEVIPYVDYFHALDSLKLAQEIQKR---TDHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K G + + + + Q+ GLM + P + K F
Sbjct: 117 KCFLQVNISGEESKHGFSKEELLELLPELAKLDQIEYVGLMTMAPFEADSDELKEIFKDT 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ E + +T+LSMGM+RDF+ AI G+T VRIG+ F
Sbjct: 177 QALQAEIREKQIPNIPMTELSMGMSRDFKEAIQFGSTFVRIGTAFF 222
>gi|163784800|ref|ZP_02179590.1| hypothetical protein HG1285_05093 [Hydrogenivirga sp. 128-5-R1-1]
gi|159879927|gb|EDP73641.1| hypothetical protein HG1285_05093 [Hydrogenivirga sp. 128-5-R1-1]
Length = 181
Score = 220 bits (562), Expect = 9e-56, Method: Composition-based stats.
Identities = 57/181 (31%), Positives = 84/181 (46%), Gaps = 3/181 (1%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + Q + E SA + R + V ++ SK +K+ A G F EN++QE
Sbjct: 1 MGIKENYQKILEIAEKSAKKSGRKLEDVIILGASKTQPVEKLIEAYKAGLRYFGENRVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L++ D+ IG LQ+NK V F++I ++ R+ A L K +
Sbjct: 61 GIDKIEKLKEYKDIHWHLIGGLQTNKAKYAVKYFEMIHSLDRKPLADELDKRAKKIGKKQ 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
V I+VN G E K G+ P K+ QK LN+ GLMCIPP + +P+F L
Sbjct: 121 DVLIEVNIGGEESKYGVQPENLKELFEYSMQKENLNILGLMCIPPYSENKEDSRPYFVRL 180
Query: 178 S 178
Sbjct: 181 R 181
>gi|76788184|ref|YP_329214.1| hypothetical protein SAK_0582 [Streptococcus agalactiae A909]
gi|76798290|ref|ZP_00780537.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
18RS21]
gi|77405597|ref|ZP_00782687.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
H36B]
gi|76563241|gb|ABA45825.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
A909]
gi|76586362|gb|EAO62873.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
18RS21]
gi|77175819|gb|EAO78598.1| conserved hypothetical protein TIGR00044 [Streptococcus agalactiae
H36B]
Length = 224
Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + A+ A R +SV +VAV+K V+ + + G EN++ +
Sbjct: 2 MNLQENKTAIFDNVSKLALKAGRAHESVHIVAVTKYVNCQTTEALIRTGVNHIGENRVDK 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ E + IGSLQ KV ++++ D + K A+ + K +
Sbjct: 62 FLEKYQALKDEK-LTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAAEIQKRAQK---PI 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
++QVN E K G Q D + L + ++ + G+M + P + F
Sbjct: 118 KCFLQVNISREDSKHGFTIEQIDDALNLISRYDKIELIGIMTMAPLKATKEEISSIFEET 177
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + T+LSMGM+RD+++AI +G+T VRIG+ F
Sbjct: 178 ESLRKRLQARNIERMPFTELSMGMSRDYDIAIQNGSTFVRIGTSFF 223
>gi|254584384|ref|XP_002497760.1| ZYRO0F12870p [Zygosaccharomyces rouxii]
gi|238940653|emb|CAR28827.1| ZYRO0F12870p [Zygosaccharomyces rouxii]
Length = 274
Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 68/237 (28%), Positives = 112/237 (47%), Gaps = 20/237 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + K + + A + V L+AVSK+ + I++ G F EN +QE
Sbjct: 36 LIARYNEVKSSCDAACEKAGVNR-EVLLLAVSKLKPASDIQILYDHGVRHFGENYVQELI 94
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVS--LFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L + D+Q FIG LQ+NK ++ +ET+ K A L+ ++ + +
Sbjct: 95 EKSKLLPQ--DIQWHFIGGLQTNKCKDLAKVTNIRYVETIDSLKKAKKLNETRVEGAPVI 152
Query: 121 PVYIQVNTGYEIQKSGIMPN-QTKDFVI--LCRQKYQLNVEGLMCIP----PAMGNPKPH 173
IQ+NT E QKSG+ + + V L + + +EGL+ I +P
Sbjct: 153 LCNIQINTSDESQKSGLSNEKEIFELVEFFLSPESKNVQLEGLLTIGSWDSSHSDDPNVD 212
Query: 174 FYLLSEIAR-ECKLTK-------LSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
S +A + K+ + LSMGM+ DF+ A+ G++ +RIG+ IFG RP +
Sbjct: 213 NADFSTLAHWKSKIDEKFGINLKLSMGMSADFKQAVRQGSSEIRIGTDIFGTRPAKA 269
>gi|307707456|ref|ZP_07643938.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
gi|307616408|gb|EFN95599.1| conserved hypothetical protein [Streptococcus mitis NCTC 12261]
Length = 223
Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + Q+I++++ A R +SVS+VAV+K VD L G EN++ +
Sbjct: 1 MNLKENTERVFQQIKDASQQAGREANSVSVVAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ ++ IG+LQ KV +++ D + K A + R +
Sbjct: 61 FLEKYEALKDR-NITWHLIGTLQRRKVKDVIQYVDYFHALDSLKLAEEIQKR---SDRVV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
++QVN E K G + + + ++ GLM + P K F
Sbjct: 117 KCFLQVNISREESKHGFSREELLELLPELATLDKIEYVGLMTMAPFEASSDELKEIFKAT 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ E + +T LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQLEIREKQIPNMPMTDLSMGMSRDYKEAIEFGSTFVRIGTAFF 222
>gi|115314027|ref|YP_762750.1| hypothetical protein FTH_0059 [Francisella tularensis subsp.
holarctica OSU18]
gi|115128926|gb|ABI82113.1| possible alanine racemase [Francisella tularensis subsp. holarctica
OSU18]
Length = 222
Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 67/204 (32%), Positives = 101/204 (49%), Gaps = 14/204 (6%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V L+AVSK KI GQ+ F EN QE ++K L ++ FIGSLQS K+
Sbjct: 22 VRLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLP---HLRWHFIGSLQSRKI 78
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
IV I++V + + + ++ + V++Q+N +I KSG Q ++ V
Sbjct: 79 KHIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVVA 138
Query: 148 LC---RQKYQLNVEGLMCIPPAMGNPKPHFYLLS--------EIARECKLTKLSMGMTRD 196
+ L + GLMCIP P+ F + + + KL++LSMGM+ D
Sbjct: 139 SIMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNFRLNDDLKLSRLSMGMSAD 198
Query: 197 FELAIASGATSVRIGSGIFGERPC 220
+ LAI G+T VR+GS +FG R
Sbjct: 199 YRLAIQYGSTDVRVGSSLFGARAT 222
>gi|332295641|ref|YP_004437564.1| protein of unknown function UPF0001 [Thermodesulfobium narugense
DSM 14796]
gi|332178744|gb|AEE14433.1| protein of unknown function UPF0001 [Thermodesulfobium narugense
DSM 14796]
Length = 222
Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 67/221 (30%), Positives = 113/221 (51%), Gaps = 12/221 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +Q K++++ + AKR KD V ++ V+K ++ IR + G +F EN+++EAK
Sbjct: 1 MQENVQKVKERVQKAKEAAKR-KDEVFILPVTKTKSTEIIRALIEMGFNVFGENRVREAK 59
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L +V+ IG LQ+NKV + + +F I++V K + ++ K+ +PV
Sbjct: 60 EKIKELS---NVKFEMIGHLQTNKVKDALDIFTRIQSVDSLKLLTEINERAAKKKIVMPV 116
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+++N E QK G +P + + + +N+EGLM + + + F L
Sbjct: 117 LVEINISGESQKYGFLPGEVMNLFRVTSSLRFVNIEGLMGMASLTNDTDKIRKEFSTLRI 176
Query: 180 IAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ L LSMGMT DFE+AI G+ VRIG F
Sbjct: 177 LYERLNAEGYNLNVLSMGMTDDFEVAIMEGSNMVRIGRAFF 217
>gi|225868961|ref|YP_002744909.1| hypothetical protein SZO_13950 [Streptococcus equi subsp.
zooepidemicus]
gi|225702237|emb|CAW99985.1| conserved hypothetical protein [Streptococcus equi subsp.
zooepidemicus]
Length = 223
Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + I + A RP++SVS++AV+K VD + G AEN++ +
Sbjct: 1 MDLQKNKDIVFENIRLATQAANRPENSVSVIAVTKYVDKAVAGQLIDMGIEHIAENRIDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ V FIG+LQ KV E+++ D + K A + +
Sbjct: 61 FLDKYEALKDR-QVTWHFIGTLQRRKVKEVINKVDYFHALDSVKLALEIEKRA---DHPV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K G + + + +L++ G+M + P + + F
Sbjct: 117 KCFLQVNISEEESKHGFKIAELDAAIEEISKVEKLHLVGIMTMAPIDASQQELRSIFQKA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ + + T+LSMGM+ D+ +AI G+T VRIG+ F
Sbjct: 177 NQLRKNLQSKKRKNMPFTELSMGMSNDYPIAIQEGSTFVRIGTSFF 222
>gi|17533025|ref|NP_495001.1| hypothetical protein F09E5.8 [Caenorhabditis elegans]
gi|1731185|sp|P52057|PROSC_CAEEL RecName: Full=Proline synthase co-transcribed bacterial homolog
protein
gi|1019957|gb|AAA79348.1| Hypothetical protein F09E5.8 [Caenorhabditis elegans]
Length = 244
Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 75/244 (30%), Positives = 107/244 (43%), Gaps = 23/244 (9%)
Query: 1 MSL---GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
MS+ L + + ++ ++ LVAVSK + I S Q F EN
Sbjct: 1 MSIEIVQKSLFNIIEAVADAVTASQ-ATKRCRLVAVSKTKSADLIEACYSQNQRHFGENY 59
Query: 58 LQEAKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMI 114
+QE ++K L K D++ FIG +QSNK+ +I + +ETV EK A + E
Sbjct: 60 VQELEEKSDVLASKCLDIRWHFIGQVQSNKIGKICNSPGLWCVETVETEKHARIFDKEWS 119
Query: 115 KQSR---FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN- 169
K L V +QVNT E K GI + R + L +G M I +
Sbjct: 120 KHGANLSPLRVLVQVNTSGEDNKGGIEIGEAPKLAEFIRKECQNLKFDGFMTIGSFDNSH 179
Query: 170 ---PKPHFYLLSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P F L ++ + +LSMGM+ DF AI GATSVR+GS +FG R
Sbjct: 180 ASGENPDFEKLFKVRQTWAEQTGESADSVELSMGMSDDFLQAIHQGATSVRVGSKLFGAR 239
Query: 219 PCQT 222
+
Sbjct: 240 EYKN 243
>gi|208780013|ref|ZP_03247356.1| conserved hypothetical protein [Francisella novicida FTG]
gi|254372081|ref|ZP_04987574.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida GA99-3549]
gi|151569812|gb|EDN35466.1| conserved hypothetical protein [Francisella novicida GA99-3549]
gi|208744017|gb|EDZ90318.1| conserved hypothetical protein [Francisella novicida FTG]
Length = 227
Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 66/205 (32%), Positives = 101/205 (49%), Gaps = 14/205 (6%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
L+AVSK KI GQ+ F EN QE ++K L ++ FIGSLQS K+
Sbjct: 23 RLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLP---HLRWHFIGSLQSRKIK 79
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
IV I++V + + + ++ + V++Q+N +I KSG Q ++ +
Sbjct: 80 HIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVIQS 139
Query: 149 C---RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA--------RECKLTKLSMGMTRDF 197
+ L + GLMCIP P+ F + + KL++LSMGM+ D+
Sbjct: 140 IIKAKSFINLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNSRLNDDLKLSRLSMGMSADY 199
Query: 198 ELAIASGATSVRIGSGIFGERPCQT 222
LAI G+T VR+GS +FG R +T
Sbjct: 200 RLAIQYGSTDVRVGSSLFGARLAKT 224
>gi|313682054|ref|YP_004059792.1| alanine racemase domain protein [Sulfuricurvum kujiense DSM 16994]
gi|313154914|gb|ADR33592.1| alanine racemase domain protein [Sulfuricurvum kujiense DSM 16994]
Length = 224
Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats.
Identities = 65/224 (29%), Positives = 116/224 (51%), Gaps = 11/224 (4%)
Query: 1 MSLGNK---LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENK 57
M+L + +K+E + + V +VA SK VD++ I+ GQ F ENK
Sbjct: 1 MTLLEQKRHFDHIIEKVEKARLRVS-DHHIVKIVAASKYVDAEAIKSLYDIGQRAFGENK 59
Query: 58 LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQ 116
+Q+ K L K+ ++ FIG+LQ NK++ ++S ++ ++ + A L+ + +
Sbjct: 60 VQDLINKSEQL-KDLPIEWHFIGTLQKNKINHLLSVRPHLLHSIDSIELAHALNERLERD 118
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNP---KP 172
+L +Q+N+ YE KSG P + + + + ++ +L ++G+M I + +P +
Sbjct: 119 EMYLRALVQINSAYEESKSGFFPEEINEKYAQIMQECPRLKLQGVMSIGAHVDDPVLIRK 178
Query: 173 HFYLLSEIAREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
F I + T SMGM+ DFELAI G+T +R+GS +F
Sbjct: 179 SFETTRRIFETLPQATICSMGMSSDFELAIECGSTMIRLGSILF 222
>gi|222151010|ref|YP_002560163.1| hypothetical protein MCCL_0760 [Macrococcus caseolyticus JCSC5402]
gi|222120132|dbj|BAH17467.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 220
Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats.
Identities = 63/227 (27%), Positives = 114/227 (50%), Gaps = 18/227 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L + KQ+IE++ + + +++AV+K V + + A+ G EN+++
Sbjct: 1 MEVRKNLDIIKQEIESALQKSA-DHKAPTIIAVTKYVTIDRAKEAMEAGICHLGENRIEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L D + FIG+LQS KV E+++ D + ++ R A + K +
Sbjct: 60 FLEKREALG---DATMHFIGTLQSRKVKEVINQVDYLHSLDRLSLAKEIDKRAEK---TI 113
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K GI ++ DF+ Q+ V GLM + PA + + +F +
Sbjct: 114 KCFVQVNVSDEQSKHGIKRDEVMDFIHGLASYSQIEVVGLMTMAPAAADESELRRYFKTM 173
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
++ E + T+LSMGM+ D+++A+ GAT +RIG+ + G
Sbjct: 174 KQLQLEVQNAHLSYAPCTELSMGMSNDYQIAVEEGATFIRIGTKLVG 220
>gi|299535879|ref|ZP_07049199.1| hypothetical protein BFZC1_07645 [Lysinibacillus fusiformis ZC1]
gi|298728631|gb|EFI69186.1| hypothetical protein BFZC1_07645 [Lysinibacillus fusiformis ZC1]
Length = 255
Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 16/225 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L I + R + V ++AV+K V K+ + A+ G + EN+ +
Sbjct: 25 ILTNLNKLNDLITAAEKKGNREGEKVQIIAVTKEVSVKRTQEAIEAGLIHLGENRPEGLH 84
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + +V +IGSLQ+ KV ++++ D + ++ R A + + +
Sbjct: 85 RKITDIHA--NVHWHYIGSLQTRKVKQVINSIDYLHSLDRLSLAEEIEKRAEQ---PVKC 139
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
++QVN E K G+ + FV + ++ V GLM + P N + F L +
Sbjct: 140 FVQVNVSGEESKHGLTIEEVLPFVEALKGFTKIQVVGLMTMAPNTENEAIIRSVFKQLKQ 199
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
++ T+LSMGM+ DFE+A+ GAT VR+G+ + G
Sbjct: 200 CQQQIAEQGFAHAPCTELSMGMSNDFEIAVEEGATFVRVGTALVG 244
>gi|21282800|ref|NP_645888.1| hypothetical protein MW1071 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486028|ref|YP_043249.1| hypothetical protein SAS1122 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|297208170|ref|ZP_06924600.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300912248|ref|ZP_07129691.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus TCH70]
gi|21204238|dbj|BAB94936.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244471|emb|CAG42899.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|296886909|gb|EFH25812.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300886494|gb|EFK81696.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
subsp. aureus TCH70]
gi|329728876|gb|EGG65297.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus 21193]
Length = 224
Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 102/228 (44%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + LQ +I + + +++AV+K V ++ + A G F EN+L+
Sbjct: 1 MRVKDNLQQISTQINDKSEKNNFSTK-PNVIAVTKYVTIERAKEAYEAGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L D + FIGSLQS KV +++ D + R A ++ +
Sbjct: 60 FLQKKEALPS--DAVIHFIGSLQSRKVKGVINDVDYFHALDRLSLAKEINKRAE---HKI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K GI F+ ++ ++ + GLM + P + + F L
Sbjct: 115 KCFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E + +LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 175 RLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGE 222
>gi|89255507|ref|YP_512868.1| hypothetical protein FTL_0060 [Francisella tularensis subsp.
holarctica LVS]
gi|167009352|ref|ZP_02274283.1| hypothetical protein Ftulh_01145 [Francisella tularensis subsp.
holarctica FSC200]
gi|167010277|ref|ZP_02275208.1| hypothetical protein Ftulh_06040 [Francisella tularensis subsp.
holarctica FSC200]
gi|254366933|ref|ZP_04982970.1| hypothetical protein FTHG_00094 [Francisella tularensis subsp.
holarctica 257]
gi|89143338|emb|CAJ78501.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica LVS]
gi|134252760|gb|EBA51854.1| hypothetical protein FTHG_00094 [Francisella tularensis subsp.
holarctica 257]
Length = 222
Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats.
Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 14/204 (6%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V L+AVSK KI GQ+ F EN QE ++K L ++ FIGSLQS K+
Sbjct: 22 VRLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLP---HLRWHFIGSLQSRKI 78
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
IV I++V + + + ++ + V++Q+N +I KSG Q ++ V
Sbjct: 79 KHIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVVA 138
Query: 148 LC---RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA--------RECKLTKLSMGMTRD 196
+ L + GLMCIP P+ F + + KL++LSMGM+ D
Sbjct: 139 SIMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNFRLNDDLKLSRLSMGMSAD 198
Query: 197 FELAIASGATSVRIGSGIFGERPC 220
+ LAI G+T VR+GS +FG R
Sbjct: 199 YRLAIQYGSTDVRVGSSLFGARAT 222
>gi|326803768|ref|YP_004321586.1| pyridoxal phosphate enzyme, YggS family [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651070|gb|AEA01253.1| pyridoxal phosphate enzyme, YggS family [Aerococcus urinae
ACS-120-V-Col10a]
Length = 222
Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 17/226 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ + IE++ A + V+L+ VSK ++ CG FAEN +Q
Sbjct: 1 MTIQANVKQIEGIIEDTKQSAC-SSNKVTLICVSKYHSPEEAMAVYHCGIRHFAENYVQG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + DV IG LQS KV E+++ D + R K A + K+ +
Sbjct: 60 LLAKKAAMPD--DVIWHLIGPLQSRKVKEVINEIDYYHALDRIKIAKEIDKRAAKE---I 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLL 177
+++VN E K G+ +T F+ + ++ V GLM + P + + F L
Sbjct: 115 KCFVEVNISGETSKHGLTKEETLPFIKQLAEFKKIKVVGLMTMAPSAASDSEVQEIFRQL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + T+LSMGM++D+ LAI A+ +R+G+ F
Sbjct: 175 ASLRDQVADQQWMHAPCTELSMGMSQDYPLAIKERASFIRVGAAFF 220
>gi|298694479|gb|ADI97701.1| hypothetical protein SAOV_1189 [Staphylococcus aureus subsp. aureus
ED133]
gi|323440960|gb|EGA98667.1| hypothetical protein SAO11_0027 [Staphylococcus aureus O11]
gi|323442277|gb|EGA99907.1| hypothetical protein SAO46_1759 [Staphylococcus aureus O46]
Length = 224
Score = 220 bits (561), Expect = 1e-55, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + LQ +I + + +++AV+K V ++ + A G F EN+L+
Sbjct: 1 MRVKDNLQQISTQINDKSEKNNFSTK-PNVIAVTKYVTIERAKEAYEAGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L D + FIGSLQS KV ++++ D + R A ++ +
Sbjct: 60 FFQKKEALPS--DAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINKRAE---HKI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K GI F+ ++ ++ + GLM + P + + F L
Sbjct: 115 KCFLQVNVSGEASKHGIALEDVDQFIGDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E + +LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 175 RLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGE 222
>gi|228902406|ref|ZP_04066560.1| hypothetical protein bthur0014_35820 [Bacillus thuringiensis IBL
4222]
gi|228966854|ref|ZP_04127898.1| hypothetical protein bthur0004_36600 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228792953|gb|EEM40511.1| hypothetical protein bthur0004_36600 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228857150|gb|EEN01656.1| hypothetical protein bthur0014_35820 [Bacillus thuringiensis IBL
4222]
Length = 217
Score = 219 bits (560), Expect = 1e-55, Method: Composition-based stats.
Identities = 60/219 (27%), Positives = 103/219 (47%), Gaps = 16/219 (7%)
Query: 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR 69
+ I+ S A R + LVAV+K V +K + G + EN+ + +K+
Sbjct: 3 VNEAIKESCARAGRSLQDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFG 62
Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
+ V FIGSLQ+ KV EI++ D + ++ R A + K+ + +IQV T
Sbjct: 63 SK--VNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRADKK---VKCFIQVKTS 117
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RE 183
E K G+ + F+ ++ ++ V GLM + P + E+ +E
Sbjct: 118 SEESKQGLAIEEVVSFIQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTEVQE 177
Query: 184 CKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+L +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 178 LELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 216
>gi|218680714|ref|ZP_03528611.1| hypothetical protein RetlC8_18359 [Rhizobium etli CIAT 894]
Length = 173
Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats.
Identities = 87/171 (50%), Positives = 113/171 (66%), Gaps = 1/171 (0%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L + +I A RP SV LVAVSK +++ IR A+ GQ +F EN++QE
Sbjct: 2 MELQERLDDVRSRIAAGERQAGRPAGSVRLVAVSKTFEAEAIRPAIDAGQRVFGENRVQE 61
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ KW L+ E D++L IG LQSNK ++ V+LFDVIETV REK A L+ EM +Q R
Sbjct: 62 SQGKWPGLKAEQPDIELHLIGPLQSNKAADAVALFDVIETVDREKIARALAEEMKRQGRT 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
+YIQVNTG E QK+GI P+ T FV LCR + L++EGLMCIPPA NP
Sbjct: 122 TRLYIQVNTGLEPQKAGIAPDDTPAFVALCRDELGLSIEGLMCIPPAEENP 172
>gi|254368471|ref|ZP_04984488.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FSC022]
gi|157121365|gb|EDO65566.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FSC022]
Length = 222
Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats.
Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 14/204 (6%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V L+AVSK KI GQ+ F EN QE ++K L ++ FIGSLQS K+
Sbjct: 22 VRLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLP---HLRWHFIGSLQSRKI 78
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
IV I++V + + + ++ + V++Q+N +I KSG Q ++ V
Sbjct: 79 KHIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVVA 138
Query: 148 LC---RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA--------RECKLTKLSMGMTRD 196
+ L + GLMCIP P+ F + + KL++LSMGM+ D
Sbjct: 139 SIMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNSRLNDDLKLSRLSMGMSAD 198
Query: 197 FELAIASGATSVRIGSGIFGERPC 220
+ LAI G+T VR+GS +FG R
Sbjct: 199 YRLAIQYGSTDVRVGSSLFGARAT 222
>gi|86609204|ref|YP_477966.1| hypothetical protein CYB_1746 [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557746|gb|ABD02703.1| conserved hypothetical protein TIGR00044 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 227
Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats.
Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 21/224 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++Q + +I D V ++AVSK + IR A G F E+++QEA
Sbjct: 8 IHSRIQAIRAQI----------PDHVEIMAVSKGYSADHIRAAYRAGIRHFGESRVQEAA 57
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ + IG LQ+NKV + F I++V + A L++ + + +
Sbjct: 58 VKQGQLQDLTGIVWHLIGHLQTNKVKPALKQFAWIDSVDSLRLAKLINQKAWELHLTPKL 117
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSE 179
+QV + K G + + Q Q+ + GLM I P + + F L+E
Sbjct: 118 CLQVKLAPDPNKFGWLIPDLLQSLPELNQLLQVQIVGLMTILPLGLSSEAALDLFRKLAE 177
Query: 180 IAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+A ++ LSMGM+ D+ LA+A+G+ +R+G +F
Sbjct: 178 LADYIQRSGYEHLQVHTLSMGMSDDYLLAVAAGSNLIRLGRALF 221
>gi|307637721|gb|ADN80171.1| hypothetical protein hp908_1048 [Helicobacter pylori 908]
gi|325996324|gb|ADZ51729.1| Hypothetical protein hp2018_1015 [Helicobacter pylori 2018]
gi|325997913|gb|ADZ50121.1| hypothetical protein hp2017_1011 [Helicobacter pylori 2017]
Length = 222
Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats.
Identities = 70/220 (31%), Positives = 110/220 (50%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 RQRIDTLITKIEKARTAYSR-HHIVKIVAVSKNASLEAIQHYYNCSQRAFGENKVQDLKT 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ ++SL ++ ++ K A + L
Sbjct: 64 KMHSL-EHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCETLGVTLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG++P + + + +L ++GLMCI + + F
Sbjct: 123 LLQVNSAYEESKSGVVPEEALEIYSQISETCKRLKLKGLMCIGAHTDDEKKIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ + K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|322385900|ref|ZP_08059542.1| cell division protein YlmE [Streptococcus cristatus ATCC 51100]
gi|321270079|gb|EFX52997.1| cell division protein YlmE [Streptococcus cristatus ATCC 51100]
Length = 223
Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats.
Identities = 56/226 (24%), Positives = 101/226 (44%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + Q + R KDSV+++AV+K VD + + + G EN++ +
Sbjct: 1 MDFQVNKDLIFQNVAQIVEKENRLKDSVNIIAVTKYVDCETAKKLVDTGIKHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L++E ++ IGSLQ KV ++++ D + K A ++ +
Sbjct: 61 FLEKYHALKEE-NLTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAQEINKRA---DHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G + + + + + GLM + P + + F
Sbjct: 117 NCFLQVNISKEESKHGFLVEELDSVLPELAALENICIVGLMTMAPLEADHQELNQIFSEA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + + LSMGM+RD+ AIA+G+T VRIG+ F
Sbjct: 177 HQLQLNLQSKQLKNMPFSDLSMGMSRDYPEAIANGSTYVRIGTAFF 222
>gi|308183162|ref|YP_003927289.1| hypothetical protein HPPC_05130 [Helicobacter pylori PeCan4]
gi|308065347|gb|ADO07239.1| hypothetical protein HPPC_05130 [Helicobacter pylori PeCan4]
Length = 222
Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats.
Identities = 72/220 (32%), Positives = 110/220 (50%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F EN++Q+ K
Sbjct: 5 SQRIDTLIAKIEKARIAYSR-HHIVKIVAVSKNASLEAIQHYYNCSQRAFGENRVQDLKM 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++SL ++ ++ K A + L
Sbjct: 64 KAQSL-DHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG+MP +T + + L ++GLMCI + + + F
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEVYSQISETCKYLKLKGLMCIGAHVDDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|289167470|ref|YP_003445739.1| hypothetical protein smi_0622 [Streptococcus mitis B6]
gi|288907037|emb|CBJ21871.1| conserved hypothetical protein [Streptococcus mitis B6]
Length = 223
Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + Q+I++++ + R +SVS+VAV+K VD L G EN++ +
Sbjct: 1 MNLKENTERVFQQIKDASQQSGREANSVSVVAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ ++ IG+LQ KV +++ D + K A + R +
Sbjct: 61 FLEKYEALKDR-NITWHLIGTLQRRKVKDVIQYVDYFHALDSLKLAEEIQKR---SDRVV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
++QVN E K G + + + ++ GLM + P K F
Sbjct: 117 KCFLQVNISREESKHGFSREELLELLPELATLDKIEYVGLMTMAPFEASSDELKEIFKAT 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ E + +T LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQLEIREKQIPNMPMTDLSMGMSRDYKEAIKFGSTFVRIGTAFF 222
>gi|25028604|ref|NP_738658.1| hypothetical protein CE2048 [Corynebacterium efficiens YS-314]
gi|259507662|ref|ZP_05750562.1| pyridoxal-5-phosphate dependent enzyme [Corynebacterium efficiens
YS-314]
gi|23493890|dbj|BAC18858.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259164709|gb|EEW49263.1| pyridoxal-5-phosphate dependent enzyme [Corynebacterium efficiens
YS-314]
Length = 234
Score = 219 bits (560), Expect = 2e-55, Method: Composition-based stats.
Identities = 61/229 (26%), Positives = 102/229 (44%), Gaps = 15/229 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L K++I+++ + A RP SVSL+ V+K + IR+ G EN+ QEA+
Sbjct: 7 LQANLDRVKKRIDDATVAAGRPPGSVSLLPVTKFHPVRDIRILHELGITAVGENREQEAR 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL----EMIKQSR 118
K ++ IG +Q+ K + + + +V + A L + + R
Sbjct: 67 AKHQEFPA---MEFHMIGQIQTKKANAVARWAAAVHSVDSVRLAEALDRGVGLALERGDR 123
Query: 119 ---FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
LP +IQ++ + + G+ + + + L + GLMC+PP +P F
Sbjct: 124 SVDKLPCFIQLSLDGDTSRGGVAADTAMEVAQALEEAPHLTLTGLMCVPPLGWDPLTAFS 183
Query: 176 LLSEIAR--ECKLT---KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E+ E + S GM+ D AI G+T VR+G+ I G RP
Sbjct: 184 QAREVLTGMEQHFDRDMEFSAGMSGDLAEAILHGSTIVRVGTEILGSRP 232
>gi|251782910|ref|YP_002997213.1| pyridoxaL 5'-phosphate dependent enzyme classIII family
[Streptococcus dysgalactiae subsp. equisimilis GGS_124]
gi|242391540|dbj|BAH81999.1| pyridoxaL 5'-phosphate dependent enzyme classIII family
[Streptococcus dysgalactiae subsp. equisimilis GGS_124]
Length = 223
Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L ++ + + A RP+ SVS++AV+K VDS + G AEN++ +
Sbjct: 1 MDLQKNKRIIFDNVRLATEAAHRPEHSVSVIAVTKYVDSTIAGQLIDTGIEHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ + V IG+LQ KV ++++ D + K AS + +
Sbjct: 61 FLDKYEALKDK-SVTWHLIGTLQRRKVKDVINFVDYFHALDSVKLASEIEKRA---DHPV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
++QVN E K G ++ + + + + + GLM + PA + + F
Sbjct: 117 KCFLQVNISEEDSKHGFKVSEIEAAIEEIGKMGNIQLVGLMTMAPADASQERIASIFREA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ + + T+LSMGM+ D+ +AI G+T VRIG+ F
Sbjct: 177 NQLRKNLQSKKRKNMPFTELSMGMSGDYSIAIQEGSTFVRIGTSFF 222
>gi|320546324|ref|ZP_08040643.1| cell division protein YlmE [Streptococcus equinus ATCC 9812]
gi|320449045|gb|EFW89769.1| cell division protein YlmE [Streptococcus equinus ATCC 9812]
Length = 224
Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats.
Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 16/227 (7%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + +++ N+ A R ++SV ++AV+K VDS + G EN++
Sbjct: 1 MTDFQKNKDLVFEQVANATKAANRSQESVKVIAVTKYVDSGVAARLIDTGIEHIGENRVD 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K+ L+ + ++ IG+LQ KV +++ D + K A+ +
Sbjct: 61 MFLDKYEALKDK-NLTWHLIGTLQRRKVKNVINYVDYFHALDSVKLAAEIQKRAE---HP 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYL 176
+ ++Q+N E K G ++ + + ++ + GLM + P + F
Sbjct: 117 IKCFLQINISEEESKHGFKVSEIDEALEQISNFDKVEIVGLMTMAPKNASDSEIDDIFGK 176
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ ++ + T+LSMGM+ DF +AI +GAT VRIGS F
Sbjct: 177 ADQLRQDLQERHLPHMPFTELSMGMSGDFPIAIRNGATFVRIGSSFF 223
>gi|253733573|ref|ZP_04867738.1| possible TIM-barrel fold protein [Staphylococcus aureus subsp.
aureus TCH130]
gi|253728443|gb|EES97172.1| possible TIM-barrel fold protein [Staphylococcus aureus subsp.
aureus TCH130]
Length = 224
Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 102/228 (44%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + LQ +I + + +++AV+K V ++ + A G F EN+L+
Sbjct: 1 MRVKDNLQQISTQINDKSEKNNFSTK-PNVIAVTKYVTIERAKEAYEAGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L D + FIGSLQS KV +++ D + R A ++ +
Sbjct: 60 FFQKKEALPS--DAVIHFIGSLQSRKVKGVINDVDYFHALDRLSLAKEINKRAE---HKI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K GI F+ ++ ++ + GLM + P + + F L
Sbjct: 115 KCFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E + +LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 175 RLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGE 222
>gi|213965663|ref|ZP_03393856.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium amycolatum
SK46]
gi|213951614|gb|EEB63003.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium amycolatum
SK46]
Length = 240
Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats.
Identities = 77/236 (32%), Positives = 108/236 (45%), Gaps = 19/236 (8%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL----SCGQVIFAENKLQE 60
+ + +I+++ A R V L+ VSK V + + + G AEN++QE
Sbjct: 4 ENYRKVRSEIDDACRRAGRQPSEVRLLPVSKTVPVDALVESWPELAAAGCAGLAENRVQE 63
Query: 61 AKKKWIPLRKEW-DVQLRF--IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
A K R + D IG LQ+NK +VS D + + R K A L +
Sbjct: 64 AVAKTEAFRDAFGDKAPHMAIIGPLQTNKAGHLVSCADEFQALDRPKVAGALQRRLADSE 123
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC---RQKYQLNVEGLMCIPPAMG-NPKPH 173
R L V IQVN E QKSG+ P+ +FV + + L + G M I N +
Sbjct: 124 RTLDVLIQVNASREPQKSGLAPSHAAEFVRMFGPDGEYPNLRLRGFMTIAAQNDPNVRET 183
Query: 174 FYLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L E+ L +LSMGM+ D+ AIA GAT+VR+G IFGER Q
Sbjct: 184 FAELRELRDSLLGDLPEGVSLDELSMGMSGDYHEAIAEGATTVRVGRAIFGERSYQ 239
>gi|297380235|gb|ADI35122.1| conserved hypothetical protein [Helicobacter pylori v225d]
Length = 222
Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats.
Identities = 72/220 (32%), Positives = 110/220 (50%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F EN++Q+ K
Sbjct: 5 SQRIDTLIAKIEKARIAYSR-HHIVKIVAVSKNASLEAIQNYYNCSQRAFGENRVQDLKM 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ IGSLQ NK++ ++SL ++ ++ K A + L
Sbjct: 64 KAQSL-DHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEMLGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG+MP +T + + +L ++GLMCI + + F
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKRLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|154338034|ref|XP_001565243.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
gi|134062290|emb|CAM36679.1| putative alanine racemase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 245
Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats.
Identities = 74/233 (31%), Positives = 108/233 (46%), Gaps = 23/233 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + + R V+L+ V K + + GQ +F EN +QE
Sbjct: 14 ALALNYKAVCDTVAQ--ESGNRR---VTLITVGKTKSPACLLSLYNLGQRVFGENYVQEL 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIK--Q 116
++K L D FIG LQSNKV E+ V VI+T+ +K A+ ++ K
Sbjct: 69 EEKARELP--GDTVWHFIGHLQSNKVRELLEGVPNLHVIQTIDSDKLANKVNEGCKKYRS 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVI-LCRQKYQLNVEGLMCIPPAMGNPKPH- 173
R L VYIQVNT E KSG P + + + L ++GLM I +P
Sbjct: 127 GRSLEVYIQVNTSGEETKSGTEPGEATVALAKYIVGECPLLQLKGLMTIGMPDYTSRPEN 186
Query: 174 FYLLSEIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L++ E + +LSMGM+ D+ AI G+T+VR+GS IFG+R
Sbjct: 187 FECLTKCREEVAQAVQVAPEDLELSMGMSGDYVNAIRMGSTTVRVGSSIFGQR 239
>gi|19553353|ref|NP_601355.1| TIM-barrel fold family protein [Corynebacterium glutamicum ATCC
13032]
gi|62390992|ref|YP_226394.1| pyridoxal-5'-phosphate dependent enzyme [Corynebacterium glutamicum
ATCC 13032]
gi|41326331|emb|CAF20493.1| pyridoxal-5'-phosphate dependent enzyme [Corynebacterium glutamicum
ATCC 13032]
Length = 234
Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats.
Identities = 65/229 (28%), Positives = 103/229 (44%), Gaps = 15/229 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +LQ + +I+ + RP+ SV L+ V+K + I++ G EN+ QEA+
Sbjct: 7 LQVRLQQVQARIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQEFGVTAVGENREQEAR 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL----SLEMIKQSR 118
K + L D+ IG +QS K + I + +V EK A L +L + + R
Sbjct: 67 AKALELP---DMDFHMIGQIQSKKANSIARWAAAVHSVDSEKIAEALGRGVALALDRGDR 123
Query: 119 F---LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
LP +IQ++ + + G +Q L EGLMC+PP P+ F
Sbjct: 124 TSDELPCFIQLSLDGDPSRGGTPLSQVTQLADCISDTTHLRFEGLMCVPPLGWGPEKAFS 183
Query: 176 LLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++ + + S GM+ D AI G+T VR+G+ I G RP
Sbjct: 184 QARDVLSGLEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRP 232
>gi|329313856|gb|AEB88269.1| Possible enzyme with a TIM-barrel fold [Staphylococcus aureus
subsp. aureus T0131]
Length = 224
Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + + LQ +I + + +++AV+K V ++ + A G F EN+L+
Sbjct: 1 MRVKDNLQQISTQINDKSEKNNFSTK-PNVIAVTKYVTIERAKEAYEAGIRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L D + FIGSLQS KV ++++ D + R A ++ +
Sbjct: 60 FFQKKEALPS--DAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINKRAE---HKI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K GI F+ ++ ++ + GLM + P + + F L
Sbjct: 115 KYFLQVNVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E + +LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 175 RLKKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGE 222
>gi|269976640|ref|ZP_06183619.1| pyridoxal phosphate enzyme, YggS family [Mobiluncus mulieris 28-1]
gi|307700576|ref|ZP_07637608.1| pyridoxal phosphate enzyme, YggS family [Mobiluncus mulieris
FB024-16]
gi|269935167|gb|EEZ91722.1| pyridoxal phosphate enzyme, YggS family [Mobiluncus mulieris 28-1]
gi|307614221|gb|EFN93458.1| pyridoxal phosphate enzyme, YggS family [Mobiluncus mulieris
FB024-16]
Length = 281
Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats.
Identities = 68/267 (25%), Positives = 105/267 (39%), Gaps = 52/267 (19%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+L ++++ +A + R V ++ VSK I+ A++ G F EN+ Q+
Sbjct: 5 QERLVGIQERVAAAARASGREPRDVRILPVSKTHPISMIQAAMAAGVREFGENRPQDLAA 64
Query: 64 KWIPLRK-----------------------------------------EWDV-QLRFIGS 81
K L + DV + IG+
Sbjct: 65 KAQELGANLRRSGSGNTGVLAGLDGVSAQPGIGGRGADLGLAPRESETKPDVPRWVMIGN 124
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQ NK IV+ ++++ + A LS + + R L V +QVN E K G+ P
Sbjct: 125 LQRNKAKLIVAYAAELQSLDSLRLAETLSRLLGEAGRELDVMVQVNVSGETVKHGVEPGV 184
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPA-----MGNPKPHFYLLSEIARE-----CKLTKLSM 191
DF L + G M + F L I + + LSM
Sbjct: 185 ALDFAGRVAALPGLRLTGFMGVAAPLSVVGEAGVHEAFARLRAIRDVAVVSIPEASGLSM 244
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DFE+AIA G+T VR+GSG+FG+R
Sbjct: 245 GMSGDFEIAIAEGSTCVRLGSGLFGQR 271
>gi|225718710|gb|ACO15201.1| Proline synthetase co-transcribed bacterial homolog protein
[Caligus clemensi]
Length = 248
Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats.
Identities = 72/238 (30%), Positives = 108/238 (45%), Gaps = 18/238 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAK---RPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
S+ + L +KI + R K+ +L+AVSK + I A + GQ F EN +
Sbjct: 12 SVADNLMCVLEKIRVTYEKTSPETRSKNLPNLIAVSKTKPKENIIEAYNAGQRHFGENYV 71
Query: 59 QEAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIK 115
QE +K L ++ FIGSLQS VS++ V V+ T+S A L
Sbjct: 72 QELLEKSTELESTCPEISWHFIGSLQSKNVSKLLKVRNLSVLHTLSSRSLADKLQNATQA 131
Query: 116 QSRF-LPVYIQVNTGYEIQKSGIMPN-QTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKP 172
+ L V +QVN E K G+ + V +L+ GLM I G K
Sbjct: 132 RDIPSLSVLVQVNVSGEANKGGVAFGPEVSALVSYILSSCPRLHFLGLMAIGAP-GEEKA 190
Query: 173 HFYLLSEI----ARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
F + ++ A+E + + LS+GM+ D E A+ G+T +R+G IFGER +
Sbjct: 191 DFSRMRDLRRDVAQEHGINEESLRLSIGMSGDMETAVEYGSTDLRMGRQIFGERTPKA 248
>gi|306829912|ref|ZP_07463099.1| YggS family pyridoxal phosphate enzyme [Streptococcus mitis ATCC
6249]
gi|304427923|gb|EFM31016.1| YggS family pyridoxal phosphate enzyme [Streptococcus mitis ATCC
6249]
Length = 223
Score = 219 bits (559), Expect = 2e-55, Method: Composition-based stats.
Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L ++ Q+I ++++ A R D+VS++AV+K VD + L G EN++ +
Sbjct: 1 MNLKKNTELVFQQIADASLEANRALDAVSVIAVTKYVDIQTAEALLPLGVRHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L K++ V IG+LQ KV E++ D + K A + +
Sbjct: 61 FLEKYQAL-KDYPVTWHLIGTLQRRKVKEVIPYVDYFHALDSLKLAQEIQKR---TDHVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
++QVN E K G + + + + Q+ GLM + P + + F
Sbjct: 117 KCFLQVNISGEKSKHGFSKEELLELLPELAKLDQIEYVGLMTMAPFEADSEKLKEIFKET 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ E + +T+LSMGM+RDF+ AI G+T VRIG+ F
Sbjct: 177 QALQAEIREKQIPNMPMTELSMGMSRDFKEAIQFGSTFVRIGTAFF 222
>gi|317178637|dbj|BAJ56425.1| hypothetical protein HPF30_0328 [Helicobacter pylori F30]
Length = 222
Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats.
Identities = 73/220 (33%), Positives = 110/220 (50%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 SQRIDTLIAKIEKARIAYSR-HHIVKIVAVSKNASLEAIQHYYNCSQRAFGENKVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ ++SL ++ ++ K A + L
Sbjct: 64 KMHSL-EHLPLEWHMIGSLQKNKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG+MP +T + + L ++GLMCI + + F
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKHLKLKGLMCIGAHADDEKEIEKSFTTTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFERLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|156501438|ref|YP_001427502.1| hypothetical protein FTA_0069 [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|290954264|ref|ZP_06558885.1| hypothetical protein FtulhU_08547 [Francisella tularensis subsp.
holarctica URFT1]
gi|295312328|ref|ZP_06803115.1| hypothetical protein FtulhU_08534 [Francisella tularensis subsp.
holarctica URFT1]
gi|156252041|gb|ABU60547.1| hypothetical protein with alanine racemase N-terminal domain
[Francisella tularensis subsp. holarctica FTNF002-00]
Length = 222
Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats.
Identities = 67/204 (32%), Positives = 99/204 (48%), Gaps = 14/204 (6%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V L+AVSK KI GQ+ F EN QE ++K L ++ FIGSLQS K+
Sbjct: 22 VRLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLP---HLRWHFIGSLQSRKI 78
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
IV I++V + + + + + V++Q+N +I KSG Q ++ V
Sbjct: 79 KHIVKYASSIQSVENIEHLEKIDKAAGQIVKIVDVFLQINIDDDINKSGFESTQLEEVVA 138
Query: 148 LC---RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA--------RECKLTKLSMGMTRD 196
+ L + GLMCIP P+ F + + KL++LSMGM+ D
Sbjct: 139 SIMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNFRLNDDLKLSRLSMGMSAD 198
Query: 197 FELAIASGATSVRIGSGIFGERPC 220
+ LAI G+T VR+GS +FG R
Sbjct: 199 YRLAIQYGSTDVRVGSSLFGARAT 222
>gi|15645023|ref|NP_207193.1| hypothetical protein HP0395 [Helicobacter pylori 26695]
gi|3183222|sp|O25156|Y395_HELPY RecName: Full=UPF0001 protein HP_0395
gi|2313495|gb|AAD07459.1| conserved hypothetical protein [Helicobacter pylori 26695]
Length = 222
Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats.
Identities = 71/220 (32%), Positives = 109/220 (49%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
K+ KIE + R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 RQKIDALITKIEKARTAYSR-HHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKT 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ ++SL ++ ++ K A + L
Sbjct: 64 KMHSL-EHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG++P + + + L ++GLMCI + + F
Sbjct: 123 LLQVNSAYEESKSGVVPEEALEIYSQISETCKHLKLKGLMCIGAHTDDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ + K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|119486907|ref|XP_001262373.1| alanine racemase family protein, putative [Neosartorya fischeri
NRRL 181]
gi|119410530|gb|EAW20476.1| alanine racemase family protein, putative [Neosartorya fischeri
NRRL 181]
Length = 267
Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats.
Identities = 78/255 (30%), Positives = 113/255 (44%), Gaps = 36/255 (14%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPK-DSVSLVAVSKMVDSKKIRVALS--CGQVIFAENKL 58
+L L ++ +A+ A RP + L+AVSK+ + I + + F EN L
Sbjct: 10 TLLANLSSVTSRVSTAALNANRPATKPIRLIAVSKLKPAADILALHNPPTNHLHFGENYL 69
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF---DVIETVSREKTASLLSLEMIK 115
QE +K L ++ FIG LQSNK + +E++ EK ASLL +
Sbjct: 70 QELLEKSKLLP--PSIRWHFIGGLQSNKCVTLARDVRGLWAVESIDSEKKASLLDRGWGE 127
Query: 116 QSR---------FLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQ-KYQLNVEGLMCIP 164
+S L V +QVNT E K+G+ P R+ +L ++G+M I
Sbjct: 128 RSEEVRGVAHEDRLRVLVQVNTSGEENKAGVDPVAGAVPLARFIREKCPRLKLQGVMTIG 187
Query: 165 PAM-------GNPKPHFYLLSE----IARECKLT------KLSMGMTRDFELAIASGATS 207
F L E I RE L +LSMGM+ DFE AI G+
Sbjct: 188 AIARSKATTPETENEDFVCLRETRDRIVRELGLQGDDAELELSMGMSEDFEGAIKLGSDE 247
Query: 208 VRIGSGIFGERPCQT 222
VR+G+ IFGERP ++
Sbjct: 248 VRVGTTIFGERPPKS 262
>gi|303289263|ref|XP_003063919.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454235|gb|EEH51541.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 248
Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats.
Identities = 68/220 (30%), Positives = 95/220 (43%), Gaps = 30/220 (13%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQ-----------EAKKKWIPLRKEWDVQLR 77
LVAV K +++R G +F EN Q E +K + D +
Sbjct: 27 RLVAVGKTKPVEQLRECYDAGHRVFGENYAQERSIHWSPYDRELTEKSPAMP--PDTRWH 84
Query: 78 FIGSLQSNKVS---EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
FIG LQSNK + V +IETV K A+ L+ ++ R P+ + VNT E K
Sbjct: 85 FIGHLQSNKAKTLVKAVPGLAMIETVDSVKLANRLADACVEAGRVEPLGVMVNTSGEASK 144
Query: 135 SGIMPNQTKDFVILC--RQKYQLNVEGLMCIPPAMGNPKPH-FYLLS-------EIAREC 184
G+ PN L GLM I +P F LL+ ++
Sbjct: 145 HGVEPNAATALASHIVNECAPALAFRGLMTIGMPDYTSRPENFELLAKARSTRDDVCDAL 204
Query: 185 KLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L +LSMGM+ D+E AI+ G+ +VR+GS IFG R
Sbjct: 205 GLDATEVELSMGMSGDYESAISMGSDNVRVGSTIFGARDY 244
>gi|254382588|ref|ZP_04997946.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194341491|gb|EDX22457.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 239
Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats.
Identities = 62/230 (26%), Positives = 104/230 (45%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I ++ A R +D V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAENLARVEERISSACAAAGRARDEVTLIVVTKTYPASDVRLLAELGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ + F+G LQ+NKV + V+++V R K + LS R L
Sbjct: 68 P-KAAACADLPLGWHFVGQLQTNKVRSVAGYAHVVQSVDRPKLVTSLSAAATGAGRELGC 126
Query: 123 YIQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP----PAMGNPKPHF 174
+Q+ E + G P Q + L L ++G+M + P G + F
Sbjct: 127 LVQIALDAESGGRGTRGGAAPEQLAELADLVAAAPGLRIDGVMTVAPLAGPYAGREQAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L E++ + +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 ERLVELSSSLRADHPAATMVSAGMSADLEQAVAAGATHVRVGTAVLGARP 236
>gi|308234720|ref|ZP_07665457.1| pyridoxal phosphate enzyme, YggS family protein [Gardnerella
vaginalis ATCC 14018]
gi|311113967|ref|YP_003985188.1| YggS family pyridoxal phosphate enzyme [Gardnerella vaginalis ATCC
14019]
gi|310945461|gb|ADP38165.1| YggS family pyridoxal phosphate enzyme [Gardnerella vaginalis ATCC
14019]
Length = 266
Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats.
Identities = 69/242 (28%), Positives = 107/242 (44%), Gaps = 26/242 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + + I + +SV+L+A +K D +I AL G + EN+ QE
Sbjct: 22 IADGVHSVQDAIAQAESHYGCKSESVTLLAATKTRDVGEIMAALKAGVRVIGENRPQEIV 81
Query: 63 KKWIPLRKEW-----------DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
K LR + + L IG LQSNK+++++ L + I++V + A +S
Sbjct: 82 AKAEILRAQAARENLSVGVNGKIPLYLIGQLQSNKINKVLPLANGIQSVDGIELAQKISA 141
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP- 170
V ++VN E KSG +P + D + LN+ G M + + +
Sbjct: 142 RAQNLGLCTDVMLEVNVSGEATKSGCVPERAIDEALAISSLTALNLRGFMTLGARVDDEK 201
Query: 171 --KPHFYLLSEIAR----ECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ F L EI + +LSMGM+ DF AIA G+T VRIGS IFG
Sbjct: 202 IVRSGFAKLREIRDCVSEQLAQDHDGNSAKLELSMGMSGDFVWAIADGSTMVRIGSAIFG 261
Query: 217 ER 218
R
Sbjct: 262 PR 263
>gi|62262072|gb|AAX78042.1| unknown protein [synthetic construct]
Length = 257
Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats.
Identities = 66/203 (32%), Positives = 100/203 (49%), Gaps = 14/203 (6%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
L+AVSK KI GQ+ F EN QE ++K L ++ FIGSLQS K+
Sbjct: 49 RLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLP---HLRWHFIGSLQSRKIK 105
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
IV I++V + + + ++ + V++Q+N +I KSG Q ++ V
Sbjct: 106 HIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVVAS 165
Query: 149 C---RQKYQLNVEGLMCIPPAMGNPKPHFYLLS--------EIARECKLTKLSMGMTRDF 197
+ L + GLMCIP P+ F + + + KL++LSMGM+ D+
Sbjct: 166 IMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNSRLNDDLKLSRLSMGMSADY 225
Query: 198 ELAIASGATSVRIGSGIFGERPC 220
LAI G+T VR+GS +FG R
Sbjct: 226 RLAIQYGSTDVRVGSSLFGARAT 248
>gi|254431565|ref|ZP_05045268.1| conserved hypothetical protein TIGR00044 [Cyanobium sp. PCC 7001]
gi|197626018|gb|EDY38577.1| conserved hypothetical protein TIGR00044 [Cyanobium sp. PCC 7001]
Length = 220
Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats.
Identities = 68/208 (32%), Positives = 99/208 (47%), Gaps = 4/208 (1%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
AI A+ P S L+AVSK + IR A++ GQ F E++LQEA K L +
Sbjct: 3 AIRAQLPP-SCRLLAVSKGHPAAAIRAAVAAGQRSFGESRLQEAMAKQDALADLGPLDWH 61
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
FIG LQ+NK ++ F I ++ A L+ ++ R V QV + K+G
Sbjct: 62 FIGRLQANKARGVLRRFGTIHSLDSVALAQRLARIAAEEERSPAVLFQVKFRPDPAKTGF 121
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECKLTKLSMGMT 194
P + L GLM I P + F + +A E L + SMGM+
Sbjct: 122 EPEALRARWQELSALPALRPVGLMTIAPMGLEAAERRALFQECAALAAELGLPERSMGMS 181
Query: 195 RDFELAIASGATSVRIGSGIFGERPCQT 222
D+ A+ +G+T VR+GS +FG+RP Q
Sbjct: 182 GDWPEAVTAGSTWVRLGSSLFGDRPSQN 209
>gi|323464725|gb|ADX76878.1| conserved hypothetical protein [Staphylococcus pseudintermedius
ED99]
Length = 224
Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats.
Identities = 64/228 (28%), Positives = 102/228 (44%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L + I + + ++AV+K V + + A G F EN+++
Sbjct: 1 MSVKTNLAEIEHTITENVTF-REDPTRPHVIAVTKYVTINRAKEAYEAGIRHFGENRIEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L DV + FIGSLQS KV E+++ D + + R+ A +S + +
Sbjct: 60 FLEKKAALPD--DVHMHFIGSLQSRKVKEVINDIDYLHALDRQSLAKEISKRAEHE---I 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K GI + F+ + V GLM + P N + F L
Sbjct: 115 KCFVQVNVSGEASKHGIALEEVIPFIEKLVDYDHIRVVGLMTMAPYTDNEAELEDIFEKL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E + T+LSMGM+ D+ +A GAT VRIG+ + G+
Sbjct: 175 KNKRDEVQSLNLTYAPCTELSMGMSNDYHIATKKGATFVRIGTRLVGK 222
>gi|91069957|gb|ABE10885.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
clone ASNC2259]
Length = 211
Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats.
Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 13/217 (5%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
K KI +V+++AVSK S+ I+ + GQ F E+K+QEA +K
Sbjct: 4 ANYLKIKNKI----------PSNVNILAVSKGFKSQDIKTIQNIGQNDFGESKVQEAFEK 53
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
L+ ++ FIG +QSNKV +IV F I +V + +S ++ + + +
Sbjct: 54 QFILKDLKQIKWHFIGRIQSNKVRKIVQNFKYIHSVDSFEKLQKISSVSFEEKKNPLIML 113
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIA 181
Q+ + K G+ P ++ + ++GLM I P + K + F +A
Sbjct: 114 QIKLSDDPSKGGLKPELLISQWKEIKELKNITLKGLMTINPRGLSSKENLDLFRKCRSLA 173
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+L SMGM+ D+E AI +G+T +R+GS IFG+R
Sbjct: 174 DSLQLPDCSMGMSGDWEEAIDAGSTWLRLGSSIFGDR 210
>gi|123965691|ref|YP_001010772.1| TIM-barrel fold family protein [Prochlorococcus marinus str. MIT
9515]
gi|123200057|gb|ABM71665.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
str. MIT 9515]
Length = 212
Score = 218 bits (557), Expect = 3e-55, Method: Composition-based stats.
Identities = 68/223 (30%), Positives = 111/223 (49%), Gaps = 14/223 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + N LQ+ K+ +V+L+AVSK S+ I++ GQ F E++ QE
Sbjct: 1 MEISNYLQIKKE-----------LPLNVNLLAVSKGFGSQDIKIINDKGQNDFGESRFQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K + L+ D++ FIG +QSNK+ +IV FD I +V + +S ++ +
Sbjct: 50 AIEKKLLLKDFKDIKWHFIGRIQSNKIRKIVQNFDYIHSVDSYEKLLKISNIAFEEHKNP 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
+ +QV + K G P +Q + ++GLM I P N + F
Sbjct: 110 LIMLQVKLMDDPSKGGFNPKDLLGKWDEIKQLKSIKIKGLMTINPKGLNSTQNIKLFKEC 169
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A KL SMGM++D++ A+ +G+T +R+GS IFG R
Sbjct: 170 RNLANSLKLHDCSMGMSQDWKEAVEAGSTWLRLGSIIFGNRSY 212
>gi|45187572|ref|NP_983795.1| ADL301Cp [Ashbya gossypii ATCC 10895]
gi|44982310|gb|AAS51619.1| ADL301Cp [Ashbya gossypii ATCC 10895]
Length = 268
Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats.
Identities = 70/238 (29%), Positives = 105/238 (44%), Gaps = 21/238 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC-GQVIFAENKLQEA 61
L V +++ S R + V L+AVSK+ + + + G F EN +QE
Sbjct: 32 LCAAYSVVDERVSRSMEECGRRRSEVLLLAVSKLKPASDVAILYEEMGLRHFGENYVQEL 91
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF--DVIETVSREKTASLLSLEMIK---Q 116
K L D+Q FIG+LQSNK ++ + +ET+ K A L K
Sbjct: 92 VGKAAELPG--DIQWHFIGALQSNKCKDLAKVVNLHAVETIDSLKKARKLEEARAKFQPD 149
Query: 117 SRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVI--LCRQKYQLNVEGLMCIPPAM-----G 168
+ + I+VNT E QK+G+ + + V L + + GLM I
Sbjct: 150 APAILCSIEVNTSGEAQKAGVSDEAELCELVEFFLSEDAKHVRLRGLMTIGSWDASHAAD 209
Query: 169 NPKPHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
P F L++ R +LSMGM+ DF A+ G++ VRIG+ IFG RP +
Sbjct: 210 GENPEFAALAKWKRVLDGKYGLNLELSMGMSADFAAAMRQGSSEVRIGTDIFGARPAR 267
>gi|46190917|ref|ZP_00120889.2| COG0325: Predicted enzyme with a TIM-barrel fold [Bifidobacterium
longum DJO10A]
gi|189440084|ref|YP_001955165.1| hypothetical protein BLD_1222 [Bifidobacterium longum DJO10A]
gi|189428519|gb|ACD98667.1| Hypothetical TIM-barrel fold containing enzyme [Bifidobacterium
longum DJO10A]
Length = 271
Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats.
Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 34/250 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + +A R SV L+A +K D +I A+ G EN+ QE
Sbjct: 19 ITDGVHRVLDRITEAESVAGREAGSVHLLAATKTRDVGEILAAIDAGVHRIGENRPQEII 78
Query: 63 KKWIPLRKEW----------------------DVQLRFIGSLQSNKVSEIVSLFDVIETV 100
K L + + IG LQ+NK+ +++ D IE+V
Sbjct: 79 VKAPGLARLLAERGYSLGVVETEGGAAADAAHHIPFHLIGQLQANKIGKVLPAVDTIESV 138
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ A ++ + + V ++VN E KSG P+ D L ++GL
Sbjct: 139 DSIELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPSHAIDLAQRIGAMGGLRLQGL 198
Query: 161 MCIPPAMGNPKPH---FYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSV 208
M I + + + F L + T+LSMGMT D AI G+T V
Sbjct: 199 MTIGAHVDDERTIRAGFAHLRRTRDQILASGAEGTADCTELSMGMTHDMAYAIEEGSTIV 258
Query: 209 RIGSGIFGER 218
R+G+ IFGER
Sbjct: 259 RVGTAIFGER 268
>gi|323127715|gb|ADX25012.1| pyridoxaL 5'-phosphate dependent enzyme class III family protein
[Streptococcus dysgalactiae subsp. equisimilis ATCC
12394]
Length = 223
Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + + A RP+ SVS++AV+K VDS + G AEN++ +
Sbjct: 1 MDLQKNKTIIFDNVRLATEAAHRPEHSVSVIAVTKYVDSTIAGQLIDTGIEHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ + V IG+LQ KV ++++ D + K AS + +
Sbjct: 61 FLDKYEALKDK-SVTWHLIGTLQRRKVKDVINFVDYFHALDSVKLASEIEKRA---DHPV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
++QVN E K G ++ + + + + + GLM + PA + + F
Sbjct: 117 KCFLQVNISEEDSKHGFKVSEIETAIEEIGKMGNIQLVGLMTMAPADASQERIASIFREA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ + + T+LSMGM+ D+ +AI G+T VRIG+ F
Sbjct: 177 NQLRKNLQSKKRKNMPFTELSMGMSGDYSIAIQEGSTFVRIGTSFF 222
>gi|254779613|ref|YP_003057719.1| hypothetical protein HELPY_1030 [Helicobacter pylori B38]
gi|254001525|emb|CAX29543.1| Conserved hypothetical protein [Helicobacter pylori B38]
Length = 222
Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats.
Identities = 72/220 (32%), Positives = 112/220 (50%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 SQRIDTLITKIEKARIAYSR-HHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKT 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ ++SL ++ ++ K A + L
Sbjct: 64 KMHSL-EHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG++P +T + + +L ++GLMCI + + F
Sbjct: 123 LLQVNSAYEESKSGVVPEETLETYSQISETCKRLKLKGLMCIGAHTDDEKKIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ + K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|169610101|ref|XP_001798469.1| hypothetical protein SNOG_08144 [Phaeosphaeria nodorum SN15]
gi|111063300|gb|EAT84420.1| hypothetical protein SNOG_08144 [Phaeosphaeria nodorum SN15]
Length = 269
Score = 218 bits (557), Expect = 4e-55, Method: Composition-based stats.
Identities = 73/247 (29%), Positives = 102/247 (41%), Gaps = 34/247 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCG---QVIFAENKLQ 59
L L +I +A + R V L+AVSK+ + I F EN +Q
Sbjct: 15 LTENLTSITSRI-KAANKSNRN---VRLIAVSKLKPANDILALHQPPNPLHTHFGENYVQ 70
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV---SLFDVIETVSREKTASLLSL----- 111
E +K L + ++ IG LQSNK ++ + +V EK A+ L
Sbjct: 71 ELLEKSKLLPR--SIRWHMIGGLQSNKCKQLAEQIPNLWCVSSVDSEKKANELEKGRKAL 128
Query: 112 -EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCIPPAM-- 167
E L + +QVNT E KSG+ P T + L + GLM I
Sbjct: 129 IEKDNAVEKLRIMVQVNTSGEEAKSGVEPADTTALCKHVIEKCPHLELIGLMTIGAIARS 188
Query: 168 -----GNPKPHFYLLSEI----ARECKLT----KLSMGMTRDFELAIASGATSVRIGSGI 214
F L ++ A+E +LSMGM+ DFE AI G+ VR+GS I
Sbjct: 189 KETTPETENEDFVCLKDVRDKVAQELGWEQDKLELSMGMSADFEGAIKMGSDEVRVGSQI 248
Query: 215 FGERPCQ 221
FGERP +
Sbjct: 249 FGERPVK 255
>gi|328675263|gb|AEB27938.1| hypothetical protein FN3523_0081 [Francisella cf. novicida 3523]
Length = 222
Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats.
Identities = 68/203 (33%), Positives = 103/203 (50%), Gaps = 14/203 (6%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
L+AVSK KI S GQ+ F EN QE ++K L ++ FIGSLQS K+
Sbjct: 23 RLLAVSKYQSIDKIMYLASLGQLDFGENYFQELEQKAQKLP---GLRWHFIGSLQSRKIR 79
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
IV I++V + + ++ + ++ + V++Q+N +I KSG Q ++ V
Sbjct: 80 HIVKYASSIQSVEKLEQLEKINKAAKQLAKKIEVFLQINIDDDINKSGFESTQLEEVVAS 139
Query: 149 C---RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA--------RECKLTKLSMGMTRDF 197
+ L V GLMCIP +P+ F + + KL++LSMGM+ D+
Sbjct: 140 IMKAKSFINLKVVGLMCIPSKSNSPEKSFAKMKHFFDTVNSRLNDDLKLSRLSMGMSADY 199
Query: 198 ELAIASGATSVRIGSGIFGERPC 220
LAI G+T VR+GS +FG R
Sbjct: 200 TLAIKYGSTDVRVGSSLFGARAA 222
>gi|308062334|gb|ADO04222.1| hypothetical protein HPCU_05365 [Helicobacter pylori Cuz20]
Length = 222
Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats.
Identities = 73/220 (33%), Positives = 110/220 (50%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 SQRIDTLIAKIEKARIAYSR-HHIVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ ++SL ++ ++ K A + L
Sbjct: 64 KMHSL-EHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEMLGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG+MP +T + + L ++GLMCI + + F
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKHLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|317014443|gb|ADU81879.1| hypothetical protein HPGAM_05440 [Helicobacter pylori Gambia94/24]
Length = 222
Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats.
Identities = 72/220 (32%), Positives = 111/220 (50%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 RQRIDTLITKIEKARIAYSR-HHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKT 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ ++SL ++ ++ K A + L
Sbjct: 64 KMHSL-EHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALNIEKRCETLGVTLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNPKP---HFYLLS 178
+QVN+ YE KSG++P + + + +L ++GLMCI + K F
Sbjct: 123 LLQVNSAYEESKSGVVPEEALETYSQISETCKRLKLKGLMCIGAHTDDEKKIERSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ + K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|29375580|ref|NP_814734.1| hypothetical protein EF0998 [Enterococcus faecalis V583]
gi|227517921|ref|ZP_03947970.1| alanine racemase domain protein [Enterococcus faecalis TX0104]
gi|227555108|ref|ZP_03985155.1| alanine racemase domain protein [Enterococcus faecalis HH22]
gi|229546845|ref|ZP_04435570.1| alanine racemase domain protein [Enterococcus faecalis TX1322]
gi|229548939|ref|ZP_04437664.1| alanine racemase domain protein [Enterococcus faecalis ATCC 29200]
gi|255974067|ref|ZP_05424653.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256617922|ref|ZP_05474768.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256761756|ref|ZP_05502336.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256852651|ref|ZP_05558022.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256957091|ref|ZP_05561262.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256960182|ref|ZP_05564353.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|257077887|ref|ZP_05572248.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|257081251|ref|ZP_05575612.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|257083909|ref|ZP_05578270.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|257086357|ref|ZP_05580718.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|257089407|ref|ZP_05583768.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257415617|ref|ZP_05592611.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
gi|257418588|ref|ZP_05595582.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257421247|ref|ZP_05598237.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|293382547|ref|ZP_06628481.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
R712]
gi|293387852|ref|ZP_06632391.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
S613]
gi|300860004|ref|ZP_07106092.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TUSoD Ef11]
gi|307268078|ref|ZP_07549466.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX4248]
gi|307275481|ref|ZP_07556623.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX2134]
gi|307278951|ref|ZP_07560010.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0860]
gi|307289400|ref|ZP_07569354.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0109]
gi|307290040|ref|ZP_07569964.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0411]
gi|312901043|ref|ZP_07760334.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0470]
gi|312904560|ref|ZP_07763718.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0635]
gi|312906850|ref|ZP_07765847.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
DAPTO 512]
gi|312952730|ref|ZP_07771592.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0102]
gi|312978895|ref|ZP_07790621.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
DAPTO 516]
gi|29343041|gb|AAO80804.1| conserved hypothetical protein TIGR00044 [Enterococcus faecalis
V583]
gi|227074675|gb|EEI12638.1| alanine racemase domain protein [Enterococcus faecalis TX0104]
gi|227175776|gb|EEI56748.1| alanine racemase domain protein [Enterococcus faecalis HH22]
gi|229305960|gb|EEN71956.1| alanine racemase domain protein [Enterococcus faecalis ATCC 29200]
gi|229308010|gb|EEN73997.1| alanine racemase domain protein [Enterococcus faecalis TX1322]
gi|255966939|gb|EET97561.1| conserved hypothetical protein [Enterococcus faecalis T2]
gi|256597449|gb|EEU16625.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
gi|256683007|gb|EEU22702.1| conserved hypothetical protein [Enterococcus faecalis T3]
gi|256711996|gb|EEU27033.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256947587|gb|EEU64219.1| conserved hypothetical protein [Enterococcus faecalis DS5]
gi|256950678|gb|EEU67310.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
gi|256985917|gb|EEU73219.1| conserved hypothetical protein [Enterococcus faecalis JH1]
gi|256989281|gb|EEU76583.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
gi|256991939|gb|EEU79241.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
gi|256994387|gb|EEU81689.1| conserved hypothetical protein [Enterococcus faecalis D6]
gi|256998219|gb|EEU84739.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257157445|gb|EEU87405.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
gi|257160416|gb|EEU90376.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257163071|gb|EEU93031.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|291080095|gb|EFE17459.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
R712]
gi|291082699|gb|EFE19662.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
S613]
gi|295113826|emb|CBL32463.1| pyridoxal phosphate enzyme, YggS family [Enterococcus sp. 7L76]
gi|300850822|gb|EFK78571.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TUSoD Ef11]
gi|306498882|gb|EFM68376.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0411]
gi|306499655|gb|EFM69018.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0109]
gi|306504338|gb|EFM73549.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0860]
gi|306507869|gb|EFM76997.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX2134]
gi|306515719|gb|EFM84246.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX4248]
gi|310627104|gb|EFQ10387.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
DAPTO 512]
gi|310629246|gb|EFQ12529.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0102]
gi|310632073|gb|EFQ15356.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0635]
gi|311288332|gb|EFQ66888.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
DAPTO 516]
gi|311291869|gb|EFQ70425.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0470]
gi|315026974|gb|EFT38906.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX2137]
gi|315029687|gb|EFT41619.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX4000]
gi|315031716|gb|EFT43648.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0017]
gi|315034227|gb|EFT46159.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0027]
gi|315144383|gb|EFT88399.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX2141]
gi|315147949|gb|EFT91965.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX4244]
gi|315149521|gb|EFT93537.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0012]
gi|315153074|gb|EFT97090.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0031]
gi|315156847|gb|EFU00864.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0043]
gi|315157633|gb|EFU01650.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0312]
gi|315162937|gb|EFU06954.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0645]
gi|315165137|gb|EFU09154.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX1302]
gi|315168036|gb|EFU12053.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX1341]
gi|315171935|gb|EFU15952.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX1342]
gi|315173288|gb|EFU17305.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX1346]
gi|315574258|gb|EFU86449.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0309B]
gi|315577386|gb|EFU89577.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0630]
gi|315581587|gb|EFU93778.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0309A]
gi|323480237|gb|ADX79676.1| alanine racemase, N-terminal domain protein [Enterococcus faecalis
62]
gi|327534584|gb|AEA93418.1| YggS family pyridoxal phosphate enzyme [Enterococcus faecalis
OG1RF]
Length = 225
Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats.
Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 14/224 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +++ + ++R V+++ V+K V ++ + G AEN++ +
Sbjct: 2 IAENLTNINNQLQLACKSSQRSVADVTMIGVTKSVGIEEAAELVQLGVQNLAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L K D+Q IG+LQ KV I++ D + A + K +
Sbjct: 62 EKKAGLEKFNDIQWHLIGNLQRRKVKLIINEIDYFHALDSLSLAKEIQKRATK---VIRC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSE 179
+++VN E K G F+ ++ + GLM + P + + F L E
Sbjct: 119 FVEVNITGEESKHGFRKEDVLPFIQELADLDKIQIVGLMTMAPFGASEEVLHATFRELKE 178
Query: 180 IA-----RECKL---TKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + T+LSMGM+ DF +A+ GAT +RIG+ +F
Sbjct: 179 LQMTVNEKHLSFAPCTELSMGMSNDFPIAVEEGATFIRIGTALF 222
>gi|307707040|ref|ZP_07643837.1| conserved hypothetical protein [Streptococcus mitis SK321]
gi|307617566|gb|EFN96736.1| conserved hypothetical protein [Streptococcus mitis SK321]
Length = 223
Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + Q+I +++ + R +SVS+VAV+K VD L G EN++ +
Sbjct: 1 MNLKENTERVFQQIIDASQQSGREANSVSVVAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ ++ IG+LQ KV +++ D + K A + R +
Sbjct: 61 FLEKYEALKDR-NITWHLIGTLQRRKVKDVIQYVDYFHALDSLKLAEEIQKR---SDRVV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
++QVN E K G + + + ++ GLM + P K F
Sbjct: 117 KCFLQVNISREESKHGFSREELLELLPELATLDKIEYVGLMTMAPFEASSDELKEIFKAT 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ E + +T LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQLEIREKQIPNMPMTDLSMGMSRDYKEAIEFGSTFVRIGTAFF 222
>gi|322412243|gb|EFY03151.1| pyridoxaL 5'-phosphate dependent enzyme class III family protein
[Streptococcus dysgalactiae subsp. dysgalactiae ATCC
27957]
Length = 223
Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L ++ + + A RP+ SVS++AV+K VDS + G AEN++ +
Sbjct: 1 MDLQKNKRIVFDNVRLATEAAHRPEHSVSVIAVTKYVDSTIAGQLIDTGIEHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K+ L+ V IG+LQ KV E+++ D + K AS + +
Sbjct: 61 FLDKYEALKDR-SVTWHLIGTLQRRKVKEVINSVDYFHALDSVKLASEIEKRA---DHPV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
++QVN E K G ++ + + + + + GLM + PA + + F
Sbjct: 117 KCFLQVNISEEDSKHGFKVSEIEVAIEEISKMENIQLVGLMTMAPADASQERIASIFREA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ + + T+LSMGM+ D+ +AI G+T VRIG+ F
Sbjct: 177 NQLRKNLQSKKRKNMPFTELSMGMSGDYLIAIQEGSTFVRIGTSFF 222
>gi|322377422|ref|ZP_08051913.1| pyridoxal phosphate enzyme, YggS family [Streptococcus sp. M334]
gi|321281622|gb|EFX58631.1| pyridoxal phosphate enzyme, YggS family [Streptococcus sp. M334]
Length = 223
Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + Q++++++ A R +SVS++AV+K VD L G EN++ +
Sbjct: 1 MNLKENTERVFQQVKDASQQAGREDNSVSVLAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ ++ IG+LQ KV +++ D + K A + R +
Sbjct: 61 FLEKYEALKDR-NITWHLIGTLQRRKVKDVIQYVDYFHALDSLKLAEEIQKR---SDRVV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM---GNPKPHFYLL 177
++QVN E K G + + + ++ GLM + P K F
Sbjct: 117 KCFLQVNISREESKHGFSKEELLELLPELATLDKIEYVGLMTMAPFEASSDELKEIFKAT 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ E + +T LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQLEIREKQISNMPMTDLSMGMSRDYKEAIEFGSTFVRIGTAFF 222
>gi|306817808|ref|ZP_07451549.1| YggS family pyridoxal phosphate enzyme [Mobiluncus mulieris ATCC
35239]
gi|304649457|gb|EFM46741.1| YggS family pyridoxal phosphate enzyme [Mobiluncus mulieris ATCC
35239]
Length = 281
Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats.
Identities = 68/267 (25%), Positives = 105/267 (39%), Gaps = 52/267 (19%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+L ++++ +A + R V ++ VSK I+ A++ G F EN+ Q+
Sbjct: 5 QERLVGIQERVAAAARASGREPRDVRILPVSKTHPISMIQAAMAAGAREFGENRPQDLAA 64
Query: 64 KWIPLRK-----------------------------------------EWDV-QLRFIGS 81
K L + DV + IG+
Sbjct: 65 KAQELGANLRRSGSGNTGVLAGLDGVSAQPGIGGRGADLGLAPRESETKPDVPRWVMIGN 124
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQ NK IV+ ++++ + A LS + + R L V +QVN E K G+ P
Sbjct: 125 LQRNKAKLIVAYAAELQSLDSLRLAETLSRLLGEAGRELDVMVQVNVSGETVKHGVEPGV 184
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPA-----MGNPKPHFYLLSEIARE-----CKLTKLSM 191
DF L + G M + F L I + + LSM
Sbjct: 185 ALDFAGRVAALPGLRLTGFMGVAAPLSVVGESGVHEAFARLRAIRDAAVVSIPEASGLSM 244
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DFE+AIA G+T VR+GSG+FG+R
Sbjct: 245 GMSGDFEIAIAEGSTCVRLGSGLFGQR 271
>gi|317012832|gb|ADU83440.1| hypothetical protein HPLT_05240 [Helicobacter pylori Lithuania75]
Length = 222
Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats.
Identities = 71/220 (32%), Positives = 111/220 (50%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + R V +VAVSK + I+ +C Q F EN++Q+ K
Sbjct: 5 RQRIDTLIAKIEKARTAYSR-HHIVKIVAVSKNASPEAIQHYYNCSQRAFGENRVQDLKT 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ ++SL ++ ++ K A + L
Sbjct: 64 KMHSL-EHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALNIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG+MP +T + + +L ++GLMCI + + F
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKRLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ + K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|258654347|ref|YP_003203503.1| alanine racemase domain-containing protein [Nakamurella
multipartita DSM 44233]
gi|258557572|gb|ACV80514.1| alanine racemase domain protein [Nakamurella multipartita DSM
44233]
Length = 249
Score = 218 bits (556), Expect = 5e-55, Method: Composition-based stats.
Identities = 65/210 (30%), Positives = 97/210 (46%), Gaps = 13/210 (6%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
V ++ +K + + I AL+ G + EN++QE K L + FIG LQ
Sbjct: 41 DPAEVRILLATKTMPPEVIAQALAAGATLIGENRVQEVLAKADALAGFPH-TMHFIGHLQ 99
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
SNKV++++ ++T+ L + +R L V+IQVN E KSGI P +
Sbjct: 100 SNKVNQLLPHIQCLQTLDSVDLIGRLQSRLESAARNLDVFIQVNVSGEQTKSGIAPADAR 159
Query: 144 DFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIAREC---------KLTKLSM 191
+ V +L + G M I P + + L+ I +LSM
Sbjct: 160 EMVEAVAAAPRLRLRGFMTIGLNSPDRDAIRRGYRALATIRDRAADEQWPGAQDAVELSM 219
Query: 192 GMTRDFELAIASGATSVRIGSGIFGERPCQ 221
GM+ DF AIA GAT VR+GS +FG RP +
Sbjct: 220 GMSGDFADAIAEGATIVRLGSAVFGPRPAR 249
>gi|22536659|ref|NP_687510.1| ylmE protein [Streptococcus agalactiae 2603V/R]
gi|22533498|gb|AAM99382.1|AE014213_21 ylmE protein, putative [Streptococcus agalactiae 2603V/R]
Length = 224
Score = 217 bits (555), Expect = 6e-55, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L + A+ A R +SV +VAV+K V+ + + G EN++ +
Sbjct: 2 MNLQENKTAIFDNVSKLALKAGRAHESVHIVAVTKYVNCQTTEALIRTGVNHIGENRVDK 61
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ E + IGSLQ KV ++++ D + K A+ + K +
Sbjct: 62 FLEKYQALKDEK-LTWHLIGSLQRRKVKDVINYVDYFHALDSVKLAAEIQKHAQKL---I 117
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLL 177
++QVN E K G Q D + L + ++ + G+M + P + F
Sbjct: 118 KCFLQVNISREDSKHGFTIEQIDDALNLISRYDKIELIGIMTMAPLKATKEEISSIFEET 177
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + T+LSMGM+RD+++AI +G+T VRIG+ F
Sbjct: 178 ESLRKRLQARNIERMPFTELSMGMSRDYDIAIQNGSTFVRIGTSFF 223
>gi|323452956|gb|EGB08829.1| hypothetical protein AURANDRAFT_14200 [Aureococcus anophagefferens]
Length = 213
Score = 217 bits (555), Expect = 6e-55, Method: Composition-based stats.
Identities = 76/211 (36%), Positives = 100/211 (47%), Gaps = 17/211 (8%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIGSLQSNK 86
+L+AVSK+ I A + G V F EN +QE +K + + ++ FIG LQSNK
Sbjct: 3 PTLLAVSKLKPLSLIAAAHAAGHVDFGENYVQELVEKAAAVEDGVEHLKWHFIGRLQSNK 62
Query: 87 VSEI--VSLFDVIETVSREKTASLLSLEMIKQSR---FLPVYIQVNTGYEIQKSGIMPNQ 141
V ++ V + + TVS EK + L + L V++QVNT E K G P
Sbjct: 63 VRQLCGVKRLEAVHTVSSEKLVAKLDGAWPELQPGAGPLKVFVQVNTSGEEAKGGCEPAD 122
Query: 142 TKDFVILCRQKYQLNVEGLMCIP---PAMGNPKPHFYLLSEIAR--------ECKLTKLS 190
L L +EGLMCI A G+ P F L + E LS
Sbjct: 123 APALAKLAAAAPNLQLEGLMCIGKYSGAEGDASPDFVCLRDCRDAAAAALGVEPASLGLS 182
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
MGM+ DFE AI AT VR+GS IFG RP +
Sbjct: 183 MGMSHDFETAIEHDATHVRVGSTIFGARPAK 213
>gi|124025159|ref|YP_001014275.1| TIM-barrel fold family protein [Prochlorococcus marinus str.
NATL1A]
gi|123960227|gb|ABM75010.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
str. NATL1A]
Length = 213
Score = 217 bits (555), Expect = 6e-55, Method: Composition-based stats.
Identities = 63/197 (31%), Positives = 95/197 (48%), Gaps = 3/197 (1%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V+L+AVSK IR GQ+ F E++LQEA K I L ++ F+G+LQ
Sbjct: 17 PLGVNLLAVSKGHKHDSIRKLYGYGQLDFGESRLQEAILKKIDLSDLTQLRWHFVGTLQK 76
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV ++ FD I +V +S ++ + +++QV + K G + +
Sbjct: 77 NKVRRVIKEFDFIHSVDSLPLLERISRISQEEQKSPNIFLQVKFIEDPNKGGFLKEELLK 136
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLTKLSMGMTRDFELAI 201
+N+ GLM IPP + N K F A L SMGM+ D++ AI
Sbjct: 137 SWSNIISLKNINLIGLMTIPPIVLNSFQRKDLFCECRNFANHLGLKDCSMGMSNDWQEAI 196
Query: 202 ASGATSVRIGSGIFGER 218
GAT +R+GS +FG+R
Sbjct: 197 QGGATWIRLGSLLFGKR 213
>gi|221194697|ref|ZP_03567754.1| pyridoxal phosphate enzyme, YggS family [Atopobium rimae ATCC
49626]
gi|221185601|gb|EEE17991.1| pyridoxal phosphate enzyme, YggS family [Atopobium rimae ATCC
49626]
Length = 241
Score = 217 bits (555), Expect = 6e-55, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 101/226 (44%), Gaps = 11/226 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + +A + R + L+AVSK V+ + + A G F EN+ QE
Sbjct: 7 LTQRRSEILGLVSEAAKCSGRDASEIELIAVSKTVEPEAVHDAYQAGYRTFGENRPQELG 66
Query: 63 KKWIPL---RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K L DV+ IG+LQ+NK++ ++ +I ++S E A +S+ +
Sbjct: 67 RKIEALKTWPDMADVRFDMIGNLQTNKINHVIGKARLIHSISSEHLARAVSMRAEAKDCI 126
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG--NPKPHFYLL 177
V +++N E KSG P + + +++ GLM + P + F L
Sbjct: 127 CQVLLEINVSGEESKSGFSPQEVQRAADNLMSLSGISICGLMTMAPQGDAYRARKTFAGL 186
Query: 178 SEIAR------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E+ L+ LS GM+ DF LA+ G+T VR+G +F
Sbjct: 187 RELQGTLSKQMGLPLSVLSCGMSDDFPLAVREGSTMVRLGRLVFSP 232
>gi|311742793|ref|ZP_07716602.1| YggS family pyridoxal phosphate enzyme [Aeromicrobium marinum DSM
15272]
gi|311314421|gb|EFQ84329.1| YggS family pyridoxal phosphate enzyme [Aeromicrobium marinum DSM
15272]
Length = 234
Score = 217 bits (555), Expect = 6e-55, Method: Composition-based stats.
Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 12/228 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ + +I+ + A R + ++LV V+K + + + G EN+ EA
Sbjct: 7 LAAGLRAVEARIDAACAGAGRRRADITLVVVTKTHPASDVEILADLGVRHVGENRHPEAG 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K + D+ F+G++Q+NK + DV+ +V R K + LS + R L
Sbjct: 67 RKAEEVAA--DLTWHFLGAVQTNKAGAVTRYADVVHSVDRPKLVASLSRGAVAAGRELGA 124
Query: 123 YIQVNTG-----YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
+QV+ G +SG +P + + L L ++G+M + P F L
Sbjct: 125 LVQVDLGPAHGQESDGRSGALPAEVERLAALVADAEGLRLDGVMTVAPLGVPALGVFDDL 184
Query: 178 SEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
EIA T +S GM+ D E A+A+GAT +R+G I GERP
Sbjct: 185 REIAEAVRRDHPGATTISAGMSADLEQAVAAGATHLRVGRSILGERPA 232
>gi|108563422|ref|YP_627738.1| hypothetical protein HPAG1_0997 [Helicobacter pylori HPAG1]
gi|107837195|gb|ABF85064.1| hypothetical protein HPAG1_0997 [Helicobacter pylori HPAG1]
Length = 222
Score = 217 bits (555), Expect = 6e-55, Method: Composition-based stats.
Identities = 72/220 (32%), Positives = 110/220 (50%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
K+ KIE + R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 RQKIDTLITKIEKARTAYSR-HHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ +++L ++ ++ K A + L
Sbjct: 64 KMHSL-EHLPLEWHMIGSLQENKINALLNLKPALLHSLDSLKLALKIEKRCEMLGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG+MP +T + + L ++GLMCI + + F
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKHLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ + K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|295839436|ref|ZP_06826369.1| YggS family pyridoxal phosphate enzyme [Streptomyces sp. SPB74]
gi|197698751|gb|EDY45684.1| YggS family pyridoxal phosphate enzyme [Streptomyces sp. SPB74]
Length = 244
Score = 217 bits (555), Expect = 7e-55, Method: Composition-based stats.
Identities = 67/231 (29%), Positives = 101/231 (43%), Gaps = 16/231 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R + V+L+AV+K + +R+ S G EN+ QEA
Sbjct: 11 LAANLAKVEERIAKACAAAGRSRGDVTLIAVTKTYPASDVRLLSSLGVEQAGENRDQEAA 70
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ + FIG LQ+NK + + +V R + A L ++ R L
Sbjct: 71 P-KAAACADLPLTWHFIGQLQTNKARSVARYASYVHSVDRARLAEALGAAAAREGRELGA 129
Query: 123 YIQVNTGYE------IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP----AMGNPKP 172
+QV E + G P + + L GLM + P G+P+
Sbjct: 130 LVQVALDAEGDPAAHAGRGGAHPEEVPALMDRIAATEGLRPAGLMTVAPLAGRYAGDPRA 189
Query: 173 HFYLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L+E+A + T +S GM+ D E AIA+GAT VRIGS I G R
Sbjct: 190 AFTRLAELASLVRATHPAATMVSAGMSGDLEAAIAAGATHVRIGSAILGTR 240
>gi|256962576|ref|ZP_05566747.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|307272012|ref|ZP_07553278.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0855]
gi|256953072|gb|EEU69704.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
gi|306511307|gb|EFM80311.1| pyridoxal phosphate enzyme, YggS family [Enterococcus faecalis
TX0855]
Length = 225
Score = 217 bits (555), Expect = 7e-55, Method: Composition-based stats.
Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 14/224 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +++ + ++R V+++ V+K V ++ + G AEN++ +
Sbjct: 2 IAENLTNINNQLQLACKSSQRSVADVTMIGVTKSVGIEEAAELVQLGVQNLAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L K D+Q IG+LQ KV I++ D + A + K +
Sbjct: 62 EKKAGLEKFNDIQWHLIGNLQRRKVKLIINEIDYFHALDSLSLAKEIQKRATK---VIRC 118
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSE 179
+++VN E K G F+ ++ + GLM + P + + F L E
Sbjct: 119 FVEVNITGEESKHGFRKEDVLPFIQELAYLDKIQIVGLMTMAPFGASEEVLHATFRELKE 178
Query: 180 IA-----RECKL---TKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + T+LSMGM+ DF +A+ GAT +RIG+ +F
Sbjct: 179 LQMTVNEKHLSFAPCTELSMGMSNDFPIAVEEGATFIRIGTALF 222
>gi|315041367|ref|XP_003170060.1| YggS family pyridoxal phosphate enzyme [Arthroderma gypseum CBS
118893]
gi|311345094|gb|EFR04297.1| YggS family pyridoxal phosphate enzyme [Arthroderma gypseum CBS
118893]
Length = 296
Score = 217 bits (555), Expect = 7e-55, Method: Composition-based stats.
Identities = 81/279 (29%), Positives = 115/279 (41%), Gaps = 64/279 (22%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDS-----------------------VSLVAVSKMVDS 39
L L ++I +A + R + V LVAVSK+ +
Sbjct: 18 LIANLSSVSKRI--AAASSSRNHNETNTSASSVTSAPNNDSNSPAASSVRLVAVSKLKPA 75
Query: 40 KKIRVALS--CGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF--- 94
I S + F EN +QE +K L +++ FIG LQSNK +
Sbjct: 76 SDILALHSPPTSHLHFGENYMQELLEKSKALP--PEIRWHFIGGLQSNKCVTLAREVRGL 133
Query: 95 DVIETVSREKTASLLSLEMIKQ--------------SRFLPVYIQVNTGYEIQKSGIMPN 140
+E+V EK ASLL ++ +R L V++QVNT E KSGI P
Sbjct: 134 WAVESVDTEKKASLLDKGWGERAEFKDKDSDADEHANRPLRVFVQVNTSGEENKSGIQPG 193
Query: 141 Q-TKDFVILCRQ-KYQLNVEGLMCIPPAM-------GNPKPHFYLLSEIAR----ECKLT 187
+ T + R+ +L ++GLM I N F L + + L
Sbjct: 194 EPTLELCRYIREKCPRLKLQGLMTIGAIARSKATTPENENEDFACLRDTRDMVVEKLSLK 253
Query: 188 -----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+LSMGM+ DFE AI G+ VR+GS IFG RP +
Sbjct: 254 GEDTLELSMGMSNDFEGAITMGSNQVRVGSTIFGARPPK 292
>gi|269957163|ref|YP_003326952.1| alanine racemase domain-containing protein [Xylanimonas
cellulosilytica DSM 15894]
gi|269305844|gb|ACZ31394.1| alanine racemase domain protein [Xylanimonas cellulosilytica DSM
15894]
Length = 245
Score = 217 bits (555), Expect = 7e-55, Method: Composition-based stats.
Identities = 68/238 (28%), Positives = 106/238 (44%), Gaps = 22/238 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC-------GQVIFAE 55
+ +++ + + +++A A R V ++ +K D+ + A++ G V+ E
Sbjct: 8 IASRIAAVRSRADDAARTAGRDPREVRVLLATKTQDAATVLDAVAAAAGTPGWGPVLVGE 67
Query: 56 NKLQEAKKKWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
N++QE K L V++ IG LQSNKV+ ++ +ETV A+ L+
Sbjct: 68 NRVQELVAKAPALAPLVAAGTVEVHLIGHLQSNKVNPALATSSCVETVDSLAIATALATR 127
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN--- 169
+ R L V +QVN E KSG+ P L + G M I +
Sbjct: 128 CERAGRVLDVMVQVNVSGEESKSGVAPESAVALAGEVAALPGLRLVGFMTIGARSRDDAV 187
Query: 170 PKPHFYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + L I + +LSMGMT D E AIA GAT VR+G+GIFG R
Sbjct: 188 VRAGYARLRAIRDAVVGSGAPGTAEARELSMGMTDDLEAAIAEGATIVRVGTGIFGPR 245
>gi|295394941|ref|ZP_06805154.1| YggS family pyridoxal phosphate enzyme [Brevibacterium mcbrellneri
ATCC 49030]
gi|294972274|gb|EFG48136.1| YggS family pyridoxal phosphate enzyme [Brevibacterium mcbrellneri
ATCC 49030]
Length = 238
Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats.
Identities = 70/227 (30%), Positives = 111/227 (48%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +KL +++ +A A + D V ++ +K + KIRVAL G + EN++QE
Sbjct: 13 IRSKLDDVAERV-RAASEASKHVDRVQILLATKTQPASKIRVALEHGFTLIGENRVQELN 71
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K+ L + IG LQ NKV+ + I+++ K A+ + + + +
Sbjct: 72 EKFDDLADIPH-ETHLIGPLQRNKVNHTLGQASCIQSIDSMKLATKIHNRLELLDQTVEA 130
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---PPAMGNPKPHFYLLSE 179
++QVNT E KSG+ P Q + + ++ + GLM I +P + L
Sbjct: 131 FVQVNTSREDTKSGVAPEQLGELLTEIAPLERIRLRGLMTIGLPGSTEAEVRPSYADLRN 190
Query: 180 IAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ T+LSMGM+ DFELAIA GAT VRIGS +FG R
Sbjct: 191 LRDTHLDSGLLPEHATELSMGMSNDFELAIAEGATMVRIGSSVFGAR 237
>gi|171778698|ref|ZP_02919794.1| hypothetical protein STRINF_00646 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282655|gb|EDT48079.1| hypothetical protein STRINF_00646 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 224
Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats.
Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 16/227 (7%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + +++ + A R ++SV ++AV+K VDS + G EN++
Sbjct: 1 MTDFQKNKDLVFEQVAQATKAANRSQESVKIIAVTKYVDSGVAARLIDTGIEHIGENRVD 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K+ L+ + ++ IG+LQ KV +++ D + K A+ +
Sbjct: 61 MFLDKYEALKDK-NLTWHLIGTLQRRKVKNVINYVDYFHALDSVKLAAEIQKRAE---HP 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYL 176
+ ++QVN E K G ++ + + ++ + GLM + P + F
Sbjct: 117 IKCFLQVNISEEESKHGFKVSEIDEALAEISDFDKVEIVGLMTMAPKNASESEIDDIFGK 176
Query: 177 LSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E + T+LSMGM+ DF +AI +GAT VRIGS F
Sbjct: 177 ADKLRQELQARQLAHMPFTELSMGMSGDFPIAIRNGATFVRIGSSFF 223
>gi|126695752|ref|YP_001090638.1| TIM-barrel fold family protein [Prochlorococcus marinus str. MIT
9301]
gi|126542795|gb|ABO17037.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
str. MIT 9301]
Length = 211
Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats.
Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 14/221 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ N L+ K KI +V+++AVSK S++I+ + GQ F E+K+QE
Sbjct: 1 MNPANYLE-IKNKI----------PSNVNILAVSKGFKSQEIKTIQNIGQNDFGESKVQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K + L+ + FIG +QSNK+ +IV F I +V + +S ++ +
Sbjct: 50 ALEKQLTLKDHKQINWHFIGRIQSNKIRKIVQNFKYIHSVDSFEKLQKISNISREEKKNP 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
+ +QV + K G P ++ +++ GLM I P + K + F
Sbjct: 110 LIMLQVKLSDDPTKGGFNPEFLIMKWREIQELKNISLTGLMTINPKGLSSKENSGLFKKC 169
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+A +L SMGM+ D+E AI +G+T +R+GS IFG R
Sbjct: 170 RALADSLQLPDCSMGMSGDWEEAIDAGSTWLRLGSLIFGGR 210
>gi|15612051|ref|NP_223703.1| hypothetical protein jhp0986 [Helicobacter pylori J99]
gi|11136004|sp|Q9ZKF2|Y395_HELPJ RecName: Full=UPF0001 protein jhp_0986
gi|4155573|gb|AAD06567.1| putative [Helicobacter pylori J99]
Length = 222
Score = 217 bits (554), Expect = 7e-55, Method: Composition-based stats.
Identities = 71/220 (32%), Positives = 111/220 (50%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 RQRIDTLITKIEKARIAYSR-HHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ ++SL ++ ++ K A + L
Sbjct: 64 KMHSL-EHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG++P + + + +L ++GLMCI + + F
Sbjct: 123 LLQVNSAYEESKSGVVPEEALETYSQISETCKRLKLKGLMCIGAHTDDETKIEKSFTTTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ + K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|208434955|ref|YP_002266621.1| hypothetical protein HPG27_1002 [Helicobacter pylori G27]
gi|208432884|gb|ACI27755.1| hypothetical protein HPG27_1002 [Helicobacter pylori G27]
Length = 222
Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats.
Identities = 69/218 (31%), Positives = 109/218 (50%), Gaps = 8/218 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 RQRIDALITKIEKARTAYSR-HHIVKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKT 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ ++SL ++ ++ K A + L
Sbjct: 64 KMHSL-EHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG++P + + + +L ++GLMCI + + F
Sbjct: 123 LLQVNSAYEESKSGVVPEEALETYSQISETCKRLKLKGLMCIGAHTDDEKKIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + K + LSMGM+ DFELAIA GA +RIGS +F
Sbjct: 183 KLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLF 220
>gi|87160902|ref|YP_493779.1| hypothetical protein SAUSA300_1082 [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88194894|ref|YP_499694.1| hypothetical protein SAOUHSC_01153 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148267680|ref|YP_001246623.1| alanine racemase domain-containing protein [Staphylococcus aureus
subsp. aureus JH9]
gi|150393738|ref|YP_001316413.1| alanine racemase domain-containing protein [Staphylococcus aureus
subsp. aureus JH1]
gi|253731807|ref|ZP_04865972.1| hypothetical protein HMPREF0776_2189 [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|294848181|ref|ZP_06788928.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9754]
gi|295407126|ref|ZP_06816927.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A8819]
gi|297245988|ref|ZP_06929847.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A8796]
gi|87126876|gb|ABD21390.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202452|gb|ABD30262.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147740749|gb|ABQ49047.1| alanine racemase domain protein [Staphylococcus aureus subsp.
aureus JH9]
gi|149946190|gb|ABR52126.1| alanine racemase domain protein [Staphylococcus aureus subsp.
aureus JH1]
gi|253724457|gb|EES93186.1| hypothetical protein HMPREF0776_2189 [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|294824981|gb|EFG41403.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A9754]
gi|294967979|gb|EFG44007.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A8819]
gi|297177152|gb|EFH36406.1| YggS family pyridoxal phosphate enzyme [Staphylococcus aureus
A8796]
gi|320140997|gb|EFW32844.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320143053|gb|EFW34843.1| pyridoxal phosphate enzyme, YggS family [Staphylococcus aureus
subsp. aureus MRSA177]
Length = 222
Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 17/226 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + LQ +I + + +++AV+K V ++ + A G F EN+L+
Sbjct: 1 MKDNLQQISTQINDKSEKNNFSTK-PNVIAVTKYVTIERAKEAYEAGIRHFGENRLEGFF 59
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L D + FIGSLQS KV ++++ D + R A ++ +
Sbjct: 60 QKKEALPS--DAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINKRAE---HKIKC 114
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
++QVN E K GI F+ ++ ++ + GLM + P + + F L
Sbjct: 115 FLQVNVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQLRL 174
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E + +LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 175 KKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGE 220
>gi|317177809|dbj|BAJ55598.1| hypothetical protein HPF16_1001 [Helicobacter pylori F16]
Length = 222
Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats.
Identities = 71/220 (32%), Positives = 109/220 (49%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F EN++Q+ K
Sbjct: 5 SQRIDTLIAKIEKARIAYSR-HHIVKIVAVSKNASLEAIQHYYNCSQRAFGENRVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ ++SL ++ ++ K A + L
Sbjct: 64 KMRSL-EHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG+MP + + + L ++GLMCI + + F
Sbjct: 123 LLQVNSAYEESKSGVMPEEMLEIYSQISETCKHLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|317180141|dbj|BAJ57927.1| hypothetical protein HPF32_0345 [Helicobacter pylori F32]
Length = 222
Score = 217 bits (554), Expect = 8e-55, Method: Composition-based stats.
Identities = 72/219 (32%), Positives = 110/219 (50%), Gaps = 8/219 (3%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
++ KIE + I R V +VAVSK + I+ +C Q F EN++Q+ K K
Sbjct: 6 QRIDTLIAKIEKARIAYSR-HHIVKIVAVSKNASLEAIQNYYNCSQRAFGENRVQDLKIK 64
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPVY 123
L + ++ IGSLQ NK++ ++SL ++ ++ K A + L
Sbjct: 65 MHSL-EHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEMLGVNLNAL 123
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+QVN+ YE KSG+MP +T + + L ++GLMCI + + F +
Sbjct: 124 LQVNSAYEESKSGVMPEETLEIYSQISETCKCLKLKGLMCIGAHADDEKKIEKSFITTKK 183
Query: 180 IARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 184 LFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|210135218|ref|YP_002301657.1| hypothetical protein HPP12_1025 [Helicobacter pylori P12]
gi|210133186|gb|ACJ08177.1| hypothetical protein HPP12_1025 [Helicobacter pylori P12]
Length = 222
Score = 217 bits (554), Expect = 9e-55, Method: Composition-based stats.
Identities = 71/220 (32%), Positives = 111/220 (50%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
K+ KIE + R V +VAVSK + I+ +C Q F EN++Q+ K
Sbjct: 5 RQKIDTLITKIEKARTAYSR-HHIVKIVAVSKNAPPEAIQHYYNCSQRAFGENRVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ ++SL ++ ++ K A + L
Sbjct: 64 KMHSL-EHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEMLGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG++P +T + + +L ++GLMCI + + F
Sbjct: 123 LLQVNSTYEESKSGVVPEETLETYSQISETCKRLKLKGLMCIGAHADDETKIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ + K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|259483672|tpe|CBF79253.1| TPA: alanine racemase family protein, putative (AFU_orthologue;
AFUA_4G04300) [Aspergillus nidulans FGSC A4]
Length = 272
Score = 217 bits (554), Expect = 9e-55, Method: Composition-based stats.
Identities = 77/252 (30%), Positives = 113/252 (44%), Gaps = 38/252 (15%)
Query: 2 SLGNKLQVFKQKIENSAILAKRP-KDSVSLVAVSKMVDSKKIRVALS--CGQVIFAENKL 58
+L L +I+++ +K P LVAVSK+ + I + F EN L
Sbjct: 21 TLLANLASVTSRIQSA--SSKLPLPKEPRLVAVSKLKPASDILALHNPPTAHSHFGENYL 78
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS---LFDVIETVSREKTASLLSLEMIK 115
QE ++K L ++ FIG LQSNK + +E+V EK A+LL +
Sbjct: 79 QELQEKARLLP--PTIKWHFIGGLQSNKCVSLARDTRALWAVESVDSEKKATLLDKGWGE 136
Query: 116 QS------RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR----QKYQLNVEGLMCI-- 163
+ L V++QVNT E KSG+ P + + V LCR + +L ++GLM I
Sbjct: 137 RKAEMGGEEKLRVFVQVNTSGEENKSGVDPGE--EVVRLCRFIMDKCPRLRLQGLMTIGA 194
Query: 164 -----PPAMGNPKPHFYLLSEIARECKLT---------KLSMGMTRDFELAIASGATSVR 209
F L + +LSMGM+ DFE AIA G+ VR
Sbjct: 195 IARSKATTAETENEDFICLKQARERVNEALGLEGDARLELSMGMSEDFEGAIALGSDEVR 254
Query: 210 IGSGIFGERPCQ 221
+G+ IFG+RP +
Sbjct: 255 VGTTIFGDRPPK 266
>gi|255019977|ref|ZP_05292051.1| hypothetical protein ACA_2738 [Acidithiobacillus caldus ATCC 51756]
gi|254970636|gb|EET28124.1| hypothetical protein ACA_2738 [Acidithiobacillus caldus ATCC 51756]
Length = 243
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 62/203 (30%), Positives = 91/203 (44%), Gaps = 9/203 (4%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V L+AVSK V + ++R+A G F EN LQEA K L + FIG +Q NK
Sbjct: 41 VRLLAVSKGVAASRLRLAYGLGLRHFGENYLQEALDKQKALADLDGIVWHFIGRIQRNKT 100
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
I F +E++ R A L+ L V I+VN G E K G+ + +
Sbjct: 101 LAIARHFQWVESIDRALVAERLN-HARAGMPPLDVLIEVNAGGESSKGGVGLDALESLAR 159
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIARECK-------LTKLSMGMTRDFEL 199
L + GLM + P F ++ + + + LSMG + D+
Sbjct: 160 AIVTLPHLRLRGLMALVRPEPEQADADFATMAAAFQLLQDTFPKQAIDTLSMGTSTDYAR 219
Query: 200 AIASGATSVRIGSGIFGERPCQT 222
A+ GAT +R+G+ IFG R +T
Sbjct: 220 ALPMGATQIRVGTAIFGPRSQET 242
>gi|261749299|ref|YP_003256984.1| hypothetical protein BPLAN_213 [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497391|gb|ACX83841.1| conserved hypothetical protein [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 219
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 56/203 (27%), Positives = 101/203 (49%), Gaps = 11/203 (5%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
S+ ++AVSK + I G F EN +QE +K+ L K D++ IG +Q
Sbjct: 16 PKSIKILAVSKNQNISSIERLYQIGHRDFGENYVQEMIQKYQKLPK--DIRWHMIGVIQK 73
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK+ IV +I ++ + + +++ E K +R + +Q+ EI K+GI + +
Sbjct: 74 NKLKSIVPFIHLIHSIQKIEHLQIINKEAFKHNRVIKCLLQIKICNEINKAGITNQEADN 133
Query: 145 FV--ILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLTK----LSMGMTR 195
+ + + + GLM + G+ + FY L ++ E + LSMGM+
Sbjct: 134 IMNNNIYHHMKNVKIIGLMGMASLHGSTQKIRQEFYSLKKLYNEYQRKYQHHILSMGMSN 193
Query: 196 DFELAIASGATSVRIGSGIFGER 218
D+ +AI G+T +R+G+ +FG+R
Sbjct: 194 DYPIAIEYGSTHIRLGTSLFGKR 216
>gi|304570632|ref|YP_831069.2| hypothetical protein Arth_1575 [Arthrobacter sp. FB24]
Length = 248
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 13/231 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+G++L +++I + A RP + L+ V+K + +R + G EN+ QEA
Sbjct: 17 DIGSRLAAVRRRITAATEAAGRPDNPPELIVVTKFHPAADVRRLAALGVTDVGENRDQEA 76
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKT----ASLLSLEMIKQS 117
+K L ++ F+G LQSNK +V I +V R + A ++ E +
Sbjct: 77 SEKAASLSD-LRLRWHFVGQLQSNKAKSVVRYAHAIHSVDRPQLAAALAKSIAAEQERTG 135
Query: 118 R-FLPVYIQVNTGYEI--QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
R L +IQV+ + + G + L + G+M + P +P F
Sbjct: 136 RAPLECFIQVSLDEDAGSHRGGASRLEVAPLADQLAGSPGLVLAGVMAVAPLGSDPDAAF 195
Query: 175 YLLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+E + +S GM++D E AI +GAT +RIGS I G RP
Sbjct: 196 GKLAEISAQLLREHPSAKGISAGMSQDLESAIRAGATHLRIGSDILGSRPA 246
>gi|299749232|ref|XP_001838603.2| proline synthetase associated protein [Coprinopsis cinerea
okayama7#130]
gi|298408344|gb|EAU83204.2| proline synthetase associated protein [Coprinopsis cinerea
okayama7#130]
Length = 268
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 71/260 (27%), Positives = 111/260 (42%), Gaps = 49/260 (18%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L ++++ + S +LVAVSK + I G + F EN +QE +
Sbjct: 14 IKDCLGAIRERVATA------SSSSPTLVAVSKYKPAGDILACHELGHLDFGENYVQELE 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVS--EIVSLFDVIETVSREKTASLLSLEM-IKQSRF 119
+K L D++ FIG+LQSNK ++ I+T+ K A+ L+ + ++
Sbjct: 68 EKAKILPS--DIRWHFIGTLQSNKAKTLALIPNLYSIQTLGSVKAANALNKALSSDRTTP 125
Query: 120 LPVYIQVNTGYEIQKSGIMP---------NQTKDFVIL-CRQKYQLNVEGLMCIP----- 164
L V +QVNT E KSG+ P ++ R+ L +EGLM I
Sbjct: 126 LRVLLQVNTSGEDAKSGLPPLSSSEDVSASELGKLAAHVIRECPALRLEGLMTIGSLELS 185
Query: 165 --PAMGNPKPHFYLLSEIARECK--LTK-------------------LSMGMTRDFELAI 201
+ F L + K L LSMGM+ DFE A+
Sbjct: 186 IHASETEKNADFERLKQTRDILKAYLETTFGEDGTKQWGQEGTGKLLLSMGMSSDFETAL 245
Query: 202 ASGATSVRIGSGIFGERPCQ 221
+G+ +R+GS IFG RP +
Sbjct: 246 KAGSDIIRVGSSIFGGRPPK 265
>gi|74144222|dbj|BAE22181.1| unnamed protein product [Mus musculus]
Length = 326
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 65/227 (28%), Positives = 104/227 (45%), Gaps = 26/227 (11%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ S +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 5 LGVGFALRAVNERVQQS--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 62
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSL 111
+QE +K L +++ FIG LQ V+++ V ++ETV K A ++
Sbjct: 63 YVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETVDSVKLADKVNS 122
Query: 112 EMIKQSR--FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMG 168
K+ L V +Q+NT E K G++P++T V + L GLM I
Sbjct: 123 SWQKKGPTEPLKVMVQINTSGEDSKHGLLPSETIAVVEHIKASCPSLEFVGLMTIGSFGH 182
Query: 169 N----PKPHFYLL----SEIARECKLT----KLSMGMTRDFELAIAS 203
+ P P F L E+ + + +LSMGM+ DF+ A
Sbjct: 183 DLSQGPNPDFQRLLTLRRELCEKLGIPVEQVELSMGMSMDFQHATDC 229
Score = 44.3 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 201 IASGATSVRIGSGIFGERPCQ 221
I G+T+VRIGS IFGER
Sbjct: 285 IEVGSTNVRIGSTIFGERDYS 305
>gi|56708695|ref|YP_170591.1| hypothetical protein FTT_1686c [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110671167|ref|YP_667724.1| hypothetical protein FTF1686c [Francisella tularensis subsp.
tularensis FSC198]
gi|134302727|ref|YP_001122695.1| hypothetical protein FTW_1929 [Francisella tularensis subsp.
tularensis WY96-3418]
gi|224457903|ref|ZP_03666376.1| hypothetical protein FtultM_09950 [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254371325|ref|ZP_04987327.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254875569|ref|ZP_05248279.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|56605187|emb|CAG46319.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110321500|emb|CAL09702.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC198]
gi|134050504|gb|ABO47575.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis WY96-3418]
gi|151569565|gb|EDN35219.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254841568|gb|EET20004.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159945|gb|ADA79336.1| hypothetical protein NE061598_09510 [Francisella tularensis subsp.
tularensis NE061598]
Length = 222
Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 66/203 (32%), Positives = 100/203 (49%), Gaps = 14/203 (6%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
L+AVSK KI GQ+ F EN QE ++K L ++ FIGSLQS K+
Sbjct: 23 RLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLP---HLRWHFIGSLQSRKIK 79
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
IV I++V + + + ++ + V++Q+N +I KSG Q ++ V
Sbjct: 80 HIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVVAS 139
Query: 149 C---RQKYQLNVEGLMCIPPAMGNPKPHFYLLS--------EIARECKLTKLSMGMTRDF 197
+ L + GLMCIP P+ F + + + KL++LSMGM+ D+
Sbjct: 140 IMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNSRLNDDLKLSRLSMGMSADY 199
Query: 198 ELAIASGATSVRIGSGIFGERPC 220
LAI G+T VR+GS +FG R
Sbjct: 200 RLAIQYGSTDVRVGSSLFGARAT 222
>gi|284044976|ref|YP_003395316.1| alanine racemase domain protein [Conexibacter woesei DSM 14684]
gi|283949197|gb|ADB51941.1| alanine racemase domain protein [Conexibacter woesei DSM 14684]
Length = 222
Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 68/216 (31%), Positives = 106/216 (49%), Gaps = 10/216 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + +Q+I+ +A +A R V L+A K V + + V + G + EN+ Q+ +
Sbjct: 13 VSANVAEARQRIDEAAAIAGRDPGEVELLAAVKYVPLESVGVLAAAGITLVGENRAQDLE 72
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + FIG LQS KV +I+ +I +V+ + L + L V
Sbjct: 73 AKAAAHPGLF--TWDFIGHLQSRKVKQILPWVRLIHSVASDSVLDQLGKHGAAR-PDLEV 129
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
I+VN E KSG+ P FV C + V GLM +PP P + HF L E
Sbjct: 130 LIEVNVAGEASKSGVAPADLAAFVERCP----VTVSGLMTMPPLAAAPEDNRRHFAALRE 185
Query: 180 IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+A L +LSMG ++D+E+A+ GAT VR+GS ++
Sbjct: 186 LAASHGLRRLSMGTSQDYEVAVEEGATIVRLGSTLY 221
>gi|254375228|ref|ZP_04990708.1| conserved hypothetical protein [Francisella novicida GA99-3548]
gi|151572946|gb|EDN38600.1| conserved hypothetical protein [Francisella novicida GA99-3548]
Length = 222
Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 66/203 (32%), Positives = 100/203 (49%), Gaps = 14/203 (6%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
L+AVSK KI S GQ+ F EN QE ++K L ++ FIGSLQS K+
Sbjct: 23 RLLAVSKYQSIDKIMCLASLGQLDFGENYFQELEQKAQKLP---HLRWHFIGSLQSRKIK 79
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
IV I++V + + + ++ + V++Q+N +I KSG Q ++ +
Sbjct: 80 NIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVIQS 139
Query: 149 C---RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA--------RECKLTKLSMGMTRDF 197
+ L + GLMCIP P+ F + + KL++LSMGM+ D+
Sbjct: 140 IIKAKSFINLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNSRLNDDLKLSRLSMGMSADY 199
Query: 198 ELAIASGATSVRIGSGIFGERPC 220
LAI G+T VR+GS +FG R
Sbjct: 200 TLAIQYGSTDVRVGSSLFGARAT 222
>gi|261839792|gb|ACX99557.1| hypothetical protein HPKB_0988 [Helicobacter pylori 52]
gi|332673860|gb|AEE70677.1| YggS family pyridoxal phosphate enzyme [Helicobacter pylori 83]
Length = 222
Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 73/220 (33%), Positives = 111/220 (50%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 SQRIDTLIAKIEKARIAYSR-HHIVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ ++SL ++ ++ K A + L
Sbjct: 64 KMHSL-EHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEMLGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG+MP +T + + +L ++GLMCI + + F
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKRLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|242211403|ref|XP_002471540.1| predicted protein [Postia placenta Mad-698-R]
gi|220729399|gb|EED83274.1| predicted protein [Postia placenta Mad-698-R]
Length = 259
Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 72/248 (29%), Positives = 109/248 (43%), Gaps = 38/248 (15%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
LQ +Q++ + + +LVAVSK + + GQ+ F EN +QE K
Sbjct: 10 LQEIRQRVRQAIASSAPVDRQPTLVAVSKYKPASDVLACFELGQIDFGENYVQELVDKAE 69
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMI-KQSRFLPVY 123
L D++ FIG+LQSNK + ++TV+ K A+ L+ + +++ L V
Sbjct: 70 QLP--TDIRWHFIGTLQSNKAKILASIPNLYAVQTVTSTKAATALNKALPAERASPLNVL 127
Query: 124 IQVNTGYEIQKSGIMP-------NQTKDFVIL-CRQKYQLNVEGLMCIPPAMGN------ 169
+QVNT E KSG+ P + +L+++GLM I +
Sbjct: 128 VQVNTSGEDNKSGLPPLPSDATEPDLVQLARHIIVECPRLHLQGLMTIGSLTESLSSTEK 187
Query: 170 PKPHFY-------LLSEIARECKLTK------------LSMGMTRDFELAIASGATSVRI 210
P F LL E + LSMGM+ DFE A+ SG+ VR+
Sbjct: 188 PNEDFERLVRTRDLLQEALAQAGFLTDGGRWGEGGKLLLSMGMSSDFEAALNSGSDIVRV 247
Query: 211 GSGIFGER 218
G+GIFG R
Sbjct: 248 GTGIFGTR 255
>gi|118496714|ref|YP_897764.1| hypothetical protein FTN_0099 [Francisella tularensis subsp.
novicida U112]
gi|194324022|ref|ZP_03057797.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida FTE]
gi|118422620|gb|ABK89010.1| conserved protein of unknown function [Francisella novicida U112]
gi|194321919|gb|EDX19402.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida FTE]
Length = 222
Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 65/203 (32%), Positives = 100/203 (49%), Gaps = 14/203 (6%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
L+AVSK KI GQ+ F EN QE ++K L ++ FIGSLQS K+
Sbjct: 23 RLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLP---HLRWHFIGSLQSRKIK 79
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
IV I++V + + + ++ + V++Q+N +I KSG Q ++ +
Sbjct: 80 HIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVIQS 139
Query: 149 C---RQKYQLNVEGLMCIPPAMGNPKPHFYLLS--------EIARECKLTKLSMGMTRDF 197
+ L + GLMCIP P+ F + + + KL++LSMGM+ D+
Sbjct: 140 IIKAKSFINLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNSRLNDDLKLSRLSMGMSADY 199
Query: 198 ELAIASGATSVRIGSGIFGERPC 220
LAI G+T VR+GS +FG R
Sbjct: 200 RLAIQYGSTDVRVGSSLFGARAT 222
>gi|6723446|emb|CAB66326.1| putative YPT5 protein [Corynebacterium glutamicum]
Length = 221
Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 15/221 (6%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+ +I+ + RP+ SV L+ V+K + I++ G EN+ QEA+ K + L
Sbjct: 2 QARIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQELGVTAVGENREQEARAKALELP- 60
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL-------EMIKQSRFLPVY 123
D+ IG +QS K + I + +V EK A L + LP +
Sbjct: 61 --DMDFHMIGQIQSKKANSIARWAAAVHSVDSEKIAEALGRGVALALERGDRTGDELPCF 118
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
IQ++ + + G +Q L EGLMC+PP +P+ F ++
Sbjct: 119 IQLSLDGDPSRGGTPLSQVTQLADCISDTTHLRFEGLMCVPPLGWDPEKAFSQARDVLSG 178
Query: 184 CKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + S GM+ D AI G+T VR+G+ I G RP
Sbjct: 179 LEEHFDRSLEFSAGMSGDLIAAIKHGSTIVRVGTEILGNRP 219
>gi|116610245|gb|ABK02969.1| Protein of unknown function UPF0001 [Arthrobacter sp. FB24]
Length = 242
Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 63/231 (27%), Positives = 103/231 (44%), Gaps = 13/231 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+G++L +++I + A RP + L+ V+K + +R + G EN+ QEA
Sbjct: 11 DIGSRLAAVRRRITAATEAAGRPDNPPELIVVTKFHPAADVRRLAALGVTDVGENRDQEA 70
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKT----ASLLSLEMIKQS 117
+K L ++ F+G LQSNK +V I +V R + A ++ E +
Sbjct: 71 SEKAASLSD-LRLRWHFVGQLQSNKAKSVVRYAHAIHSVDRPQLAAALAKSIAAEQERTG 129
Query: 118 R-FLPVYIQVNTGYEI--QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
R L +IQV+ + + G + L + G+M + P +P F
Sbjct: 130 RAPLECFIQVSLDEDAGSHRGGASRLEVAPLADQLAGSPGLVLAGVMAVAPLGSDPDAAF 189
Query: 175 YLLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+E + +S GM++D E AI +GAT +RIGS I G RP
Sbjct: 190 GKLAEISAQLLREHPSAKGISAGMSQDLESAIRAGATHLRIGSDILGSRPA 240
>gi|331696625|ref|YP_004332864.1| hypothetical protein Psed_2811 [Pseudonocardia dioxanivorans
CB1190]
gi|326951314|gb|AEA25011.1| protein of unknown function UPF0001 [Pseudonocardia dioxanivorans
CB1190]
Length = 246
Score = 216 bits (552), Expect = 1e-54, Method: Composition-based stats.
Identities = 56/234 (23%), Positives = 104/234 (44%), Gaps = 18/234 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L +++I ++ A R V+++AV+K + ++ + + G F EN+ QEA
Sbjct: 8 LARRLAQVRERIASACAAAGRDPGEVAMLAVTKTIPARDVVLLHGLGLRDFGENRAQEAA 67
Query: 63 KKWIPLRKEWD-------VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM-- 113
K + + + + F+G LQ NK + +E+V + A L +
Sbjct: 68 AKVVEVAELLGNPPAGAAPRWYFVGGLQRNKARLVAPWVTRVESVDSARLADALDAQARR 127
Query: 114 ----IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
++ LPV +Q + + + G+ + L ++GLM + P +
Sbjct: 128 AADDGERDGPLPVLLQYSVDGDPGRGGVARDGLLTLASHVAGCAGLRLDGLMAVAPLHAD 187
Query: 170 PKPHFYLLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P+ F ++ A T LS GM+ D ++AI G+T VR+G+ + GER
Sbjct: 188 PEEAFADVAAAAEVLRAEHPAATVLSAGMSGDLDVAIRHGSTCVRVGTALVGER 241
>gi|254391600|ref|ZP_05006799.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294812127|ref|ZP_06770770.1| alanine racemase domain protein [Streptomyces clavuligerus ATCC
27064]
gi|326440716|ref|ZP_08215450.1| hypothetical protein SclaA2_06598 [Streptomyces clavuligerus ATCC
27064]
gi|197705286|gb|EDY51098.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|294324726|gb|EFG06369.1| alanine racemase domain protein [Streptomyces clavuligerus ATCC
27064]
Length = 247
Score = 216 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 67/230 (29%), Positives = 113/230 (49%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R ++ V+LV V+K + +R+ G AEN+ Q+A
Sbjct: 16 LAENLAKVEERIAAACAAAGRKREEVTLVVVTKTYPASDVRLLYELGVRNVAENRDQDAA 75
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ D+Q F+G LQ+NKV ++ DV+++V R K + LS ++ R +
Sbjct: 76 P-KAAACADLDLQWHFVGQLQTNKVRSVLGYSDVVQSVDRMKLVTALSSAAVRAGREVGC 134
Query: 123 YIQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM----GNPKPHF 174
IQV E ++ G+ P T++ L +GLM + P + G + F
Sbjct: 135 LIQVALDAETGARGERGGVAPGGTEELATAIEGSAGLRFDGLMTVAPLVGPYAGRQRAAF 194
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L EI+ + ++ +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 195 DRLMEISADLRVGHPAANMVSAGMSTDLEEAVAAGATHVRVGTAVLGVRP 244
>gi|325110552|ref|YP_004271620.1| hypothetical protein Plabr_4021 [Planctomyces brasiliensis DSM
5305]
gi|324970820|gb|ADY61598.1| protein of unknown function UPF0001 [Planctomyces brasiliensis DSM
5305]
Length = 239
Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 55/224 (24%), Positives = 102/224 (45%), Gaps = 13/224 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ + +++ + A R + L+AV+K + + L G+ E++ Q+ K
Sbjct: 12 IAENVRQIRDRMQAA--YAGRDDERPKLIAVTKYARDEWVEALLQLGECQLGESRPQQLK 69
Query: 63 KKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ ++ + IG LQ NKV I+ ++ +V + + + +
Sbjct: 70 ARSEQFARQTNRPCWHMIGQLQRNKVRSIIDATAMVHSVDSLRLLNHIDRIAGEVGVTPA 129
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ +QVN E KSG P + + + + GLM + P + + + S++
Sbjct: 130 LLLQVNVSGEESKSGFSPEEIRAAAEQLTDFNNVQISGLMTLAPKTDDEQTARQVFSDLR 189
Query: 182 R----------ECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + KLT+LSMGMT DFE AI G+T VRIGSG++
Sbjct: 190 KMREELQTRNNQLKLTELSMGMTNDFEWAIQEGSTMVRIGSGLY 233
>gi|91069819|gb|ABE10751.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
clone ASNC1092]
Length = 211
Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 64/217 (29%), Positives = 103/217 (47%), Gaps = 13/217 (5%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
K KI +V+++AVSK S++I+ + GQ F E+K+QEA +K
Sbjct: 4 ANYLKIKNKI----------PSNVNILAVSKGFKSQEIKTIQNIGQNDFGESKVQEAFEK 53
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ L+ + FIG +QSNK+ +IV F I +V + +S ++ + + +
Sbjct: 54 QLTLKDLKQINWHFIGRIQSNKIRKIVQNFKYIHSVDSFEKLQKISNISREEKKNPLIML 113
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIA 181
QV + K G P + + + GLM I P + K + F +A
Sbjct: 114 QVKLSDDPTKGGFNPEFLILKWREIQDLKNITLTGLMTINPKGLSSKENSGLFKKCRALA 173
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+L SMGM+ D+E AI +G+T +R+GS IFG R
Sbjct: 174 DSLQLPDCSMGMSGDWEEAIDAGSTWLRLGSLIFGSR 210
>gi|315586948|gb|ADU41329.1| YggS family pyridoxal phosphate enzyme [Helicobacter pylori 35A]
Length = 222
Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 72/220 (32%), Positives = 110/220 (50%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 SQRIDTLIAKIEKARIAYSR-HHIVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ ++SL ++ ++ K A + L
Sbjct: 64 KMRSL-EHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG++P +T + + L ++GLMCI + + F
Sbjct: 123 LLQVNSAYEESKSGVVPEETLEIYSQISETCKHLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|312196226|ref|YP_004016287.1| alanine racemase [Frankia sp. EuI1c]
gi|311227562|gb|ADP80417.1| alanine racemase domain protein [Frankia sp. EuI1c]
Length = 291
Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 67/265 (25%), Positives = 103/265 (38%), Gaps = 49/265 (18%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I +A A R ++LVAVSK + + V G FAEN+ QEA
Sbjct: 23 LRANLGDVRERITAAARAAGRDPAELTLVAVSKTWPAADVVVLRGLGVTHFAENREQEAA 82
Query: 63 KKWIPLRKEWDV-----------------------------------QLRFIGSLQSNKV 87
+K + + + ++G LQ NK
Sbjct: 83 RKVVEVHARLGLLPAGANGVAAGSGLAADAGRGGDSCHAGTSGTDGTIWHYVGQLQRNKA 142
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV---------NTGYEIQKSGIM 138
+ + D ++ V R + + L+ R L V +QV N + G
Sbjct: 143 NAVARWADWVQCVDRPELVASLARAAATAGRELTVCLQVSLDTSPGGPNGAPTAGRGGAA 202
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK-----LTKLSMGM 193
P L L + G+M + P P+P F L E+A + +S GM
Sbjct: 203 PADVPGLADLVAAAGWLRLAGVMAVAPRGQPPRPAFARLREVAERLRQIHPDACVISAGM 262
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ D E A+A GAT +RIG+ +FGER
Sbjct: 263 SGDLEAAVAEGATHLRIGTALFGER 287
>gi|78778775|ref|YP_396887.1| hypothetical protein PMT9312_0390 [Prochlorococcus marinus str. MIT
9312]
gi|78712274|gb|ABB49451.1| Protein of unknown function UPF0001 [Prochlorococcus marinus str.
MIT 9312]
Length = 211
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 65/217 (29%), Positives = 106/217 (48%), Gaps = 13/217 (5%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
+ K KI +V+++AVSK S++I+ + GQ F E+K QEA +K
Sbjct: 4 SNYLKIKNKI----------PSNVNILAVSKGFKSQEIKTIQNIGQNDFGESKFQEAFEK 53
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ L+ ++ FIG +QSNK+ +IV F I +V + +S + + + +
Sbjct: 54 QLILKDLKKIKWHFIGRIQSNKIRKIVQNFKYIHSVDSFEKLQKISNISDAEKKNPLIML 113
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIA 181
QV + K G P+ ++ + + GLM I P + K + F +A
Sbjct: 114 QVKLSDDPTKGGFNPDLLVLKWREIQELKNITLTGLMTINPKGLSSKENTKLFKKCRSLA 173
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+L SMGM+ D+E AI +G+T VR+GS IFG+R
Sbjct: 174 DSLQLPDCSMGMSGDWEEAIDAGSTWVRLGSLIFGDR 210
>gi|227488535|ref|ZP_03918851.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51867]
gi|227091429|gb|EEI26741.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51867]
Length = 233
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 16/228 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ LQ +Q+I + A R D V L+ V+K + + + S G EN+ QEAK
Sbjct: 7 IAAGLQRVRQRIAEAKAAAGR-TDEVRLLPVTKFHPASDVEILHSLGIEAVGENRDQEAK 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL-------EMIK 115
KK + +G +Q+ K + + +++V L +
Sbjct: 66 KKAAEFPS---MAFHMLGQIQTKKANSVARWASAVQSVDSLTLVQALDRGMQLALDRGDR 122
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L VY+Q++ + + G++ V L + GLMC+PP + F
Sbjct: 123 TTETLDVYVQLSLDGDESRGGVIAADVPFLVEAIEGSTHLRLVGLMCVPPVASDADEAFA 182
Query: 176 LLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ ++ + S GM+ D E+AI +G+T VR+G+ I G R
Sbjct: 183 TALDVKQDLDARAGHPLEFSAGMSADLEVAIKNGSTLVRVGTDILGPR 230
>gi|68535830|ref|YP_250535.1| hypothetical protein jk0755 [Corynebacterium jeikeium K411]
gi|68263429|emb|CAI36917.1| conserved hypothetical protein [Corynebacterium jeikeium K411]
Length = 251
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 51/229 (22%), Positives = 92/229 (40%), Gaps = 20/229 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +++I + L+ ++K + +++ G EN+ QEA+
Sbjct: 31 IAENLARVRRRIAVA--------GGADLLPITKFHPVEDVKLLAQLGVTAVGENREQEAR 82
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL------EMIKQ 116
K L +Q +G +Q+ K + + + T+ K + L E +
Sbjct: 83 DKHAQLADT-GLQFHMVGQVQTKKANSVARWAAAVHTLDSLKLLNALDRGAALALERGDR 141
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ LPV +Q + + Q+ G + + L + GLM +PP +P F
Sbjct: 142 NDRLPVLLQFSADGDPQRGGAVEADIDELADAVAAAENLELRGLMTVPPLDADPAAVFAR 201
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ S GM+ D E+AIA G+T VR+G+ I G RP
Sbjct: 202 GRKLVERITDRAVGAPVYSAGMSGDLEIAIAEGSTLVRVGTDIMGARPV 250
>gi|217032271|ref|ZP_03437768.1| hypothetical protein HPB128_142g19 [Helicobacter pylori B128]
gi|298735942|ref|YP_003728467.1| hypothetical protein HPB8_446 [Helicobacter pylori B8]
gi|216946037|gb|EEC24650.1| hypothetical protein HPB128_142g19 [Helicobacter pylori B128]
gi|298355131|emb|CBI66003.1| conserved hypothetical protein [Helicobacter pylori B8]
Length = 222
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 71/220 (32%), Positives = 110/220 (50%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + R V +VAVSK + I+ +C Q F EN++Q+ K
Sbjct: 5 SQRIDTLIAKIEKARTAYSR-HHIVKIVAVSKNASLEAIQHYYNCSQRAFGENRVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ ++SL ++ ++ K A + L
Sbjct: 64 KMHSL-EHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG+MP +T + + +L ++GLMCI + + F
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKRLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDRLKNASVLSMGMSCDFELAIACGANLLRIGSFLFKE 222
>gi|118377078|ref|XP_001021721.1| conserved hypothetical protein [Tetrahymena thermophila]
gi|89303487|gb|EAS01475.1| conserved hypothetical protein [Tetrahymena thermophila SB210]
Length = 262
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 72/229 (31%), Positives = 107/229 (46%), Gaps = 18/229 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L+ K+ NSAI ++V SK + ++ A G F EN + E
Sbjct: 4 AIAKSLKQVIDKV-NSAIKNSTKTSRCTIVGASKTKPLELLQQAYDAGLRHFGENYVDEI 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEI-VSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + D++ +IG LQ+NK+ ++ V ++ET+ K A+ ++ E K S+ L
Sbjct: 63 VTKAPKLPQ--DIKWHYIGHLQTNKIKQVLVPNLYMLETIDSIKLATKVNKECQKLSKKL 120
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLLS- 178
V IQV T E + + V Q L GLM I + F L
Sbjct: 121 KVLIQVKTSTEDR---VSTEDAPALVEFIMTQCPNLEFSGLMTIGYEGD--ENAFIQLYD 175
Query: 179 ---EIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
EI + KL +LSMGM++DFE AI G+T+VRIG+ IFG R
Sbjct: 176 LKIEICEKFKLNKDEIELSMGMSQDFEKAILYGSTNVRIGTTIFGAREY 224
>gi|289450556|ref|YP_003475004.1| pyridoxal phosphate enzyme, YggS family [Clostridiales genomosp.
BVAB3 str. UPII9-5]
gi|289185103|gb|ADC91528.1| pyridoxal phosphate enzyme, YggS family [Clostridiales genomosp.
BVAB3 str. UPII9-5]
Length = 323
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 65/278 (23%), Positives = 106/278 (38%), Gaps = 62/278 (22%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L V +QKI + AKR V L+AV+K ++I+ L + EN+ QE
Sbjct: 40 LRERLDVVQQKIVAACAAAKRDPREVRLIAVTKTKSLEEIKPLLELEIYDWGENRCQEML 99
Query: 63 KKWIPLRK-----------------------------------EWDVQLRFIGSLQSNKV 87
K L + + + IGSLQ NKV
Sbjct: 100 SKQAELTEFDLAAGPGKRAEIELREAASENSGRPGQTQANVVADNPINWHLIGSLQKNKV 159
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSR------FLPVYIQVNTGYEIQKSGIMPNQ 141
V +I +V + ++ K ++ PV ++VN E K G P
Sbjct: 160 KYAVGKTCLIHSVDSLELLLAINARAAKLAQAGADAFCQPVLLEVNYSGETSKHGFAPTA 219
Query: 142 TKDFVILCR--QKYQLNVEGLMCIPPAMGNPKPHFYLLS-------------------EI 180
+ + + + ++GLM + P P + + E+
Sbjct: 220 IAEILSSLKPGDVSNIRIDGLMTVAPKDAAPAALIEIFNGVRNLRDHLNKSHPWSDTPEL 279
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L +LSMGM+ D+ LAI +GAT +R+G+ + G R
Sbjct: 280 NKAVNLRELSMGMSHDYPLAIEAGATMIRLGTVLLGPR 317
>gi|269127132|ref|YP_003300502.1| alanine racemase domain-containing protein [Thermomonospora curvata
DSM 43183]
gi|268312090|gb|ACY98464.1| alanine racemase domain protein [Thermomonospora curvata DSM 43183]
Length = 244
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 63/224 (28%), Positives = 104/224 (46%), Gaps = 7/224 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R + ++L+AV+K + +R+ G EN+ QEA
Sbjct: 19 LAANLDKVRRRIAAACAAAGRDPEQITLIAVTKTFPASDVRLLAGLGVAHVGENRDQEAA 78
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + F+G LQ+NK + DV+ +V R + S LS ++ R L
Sbjct: 79 PKAAQ-CADLPLTWHFVGQLQTNKARSVARYADVVHSVDRSRLVSALSAGALRAGRTLRC 137
Query: 123 YIQVNTGYE-IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+QV+ + G P + + L + G+M + P +P P F L+++A
Sbjct: 138 LVQVSLEEHAEGRGGAAPERVPELAAQIASAEGLELGGVMAVAPLGADPAPAFERLAQVA 197
Query: 182 RECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E + T +S GM+ D E AIA GAT +RIG+ + G R
Sbjct: 198 AELRAEHPAATIISAGMSGDLEQAIACGATHLRIGTALLGGRNA 241
>gi|261838392|gb|ACX98158.1| hypothetical protein KHP_0961 [Helicobacter pylori 51]
Length = 222
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 73/220 (33%), Positives = 111/220 (50%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 SQRIDTLIAKIEKARIAYSR-HHIVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ ++SL ++ ++ K A + L
Sbjct: 64 KMHSL-EHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG+MP +T + + +L ++GLMCI + + F
Sbjct: 123 LLQVNSAYEKSKSGVMPEETLEVYSQISETCKRLKLKGLMCIGAHADDEKEIEKSFTTTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|307709601|ref|ZP_07646054.1| alanine racemase, N-terminal domain protein [Streptococcus mitis
SK564]
gi|307619637|gb|EFN98760.1| alanine racemase, N-terminal domain protein [Streptococcus mitis
SK564]
Length = 223
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ + +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTERVFREVAEASLSAHRESGSVSVIAVTKYVDVLTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ DV IG+LQ KV +++ D + K A + R +
Sbjct: 61 FLEKYQALKDR-DVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAEEIQKR---SDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K G + + + + ++ GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFSREELLEILPELAKLDKIEYVGLMTMAPFEASSEQLKEIFKAT 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQKEIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTAFF 222
>gi|187930942|ref|YP_001890926.1| hypothetical protein FTM_0034 [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187711851|gb|ACD30148.1| conserved hypothetical protein [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 222
Score = 216 bits (550), Expect = 2e-54, Method: Composition-based stats.
Identities = 65/203 (32%), Positives = 100/203 (49%), Gaps = 14/203 (6%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
L+AVSK KI GQ+ F EN QE ++K L ++ FIGSLQS K+
Sbjct: 23 RLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLP---HLRWHFIGSLQSRKIK 79
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
IV I++V + + + ++ + V++Q+N +I KSG Q ++ V
Sbjct: 80 HIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVVAS 139
Query: 149 C---RQKYQLNVEGLMCIPPAMGNPKPHFYLLS--------EIARECKLTKLSMGMTRDF 197
+ L + GLMCIP P+ F + + + +L++LSMGM+ D+
Sbjct: 140 IMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNSRLNDDLRLSRLSMGMSADY 199
Query: 198 ELAIASGATSVRIGSGIFGERPC 220
LAI G+T VR+GS +FG R
Sbjct: 200 RLAIQYGSTDVRVGSSLFGARAT 222
>gi|116512746|ref|YP_811653.1| TIM-barrel fold family protein [Lactococcus lactis subsp. cremoris
SK11]
gi|116108400|gb|ABJ73540.1| Predicted enzyme with a TIM-barrel fold [Lactococcus lactis subsp.
cremoris SK11]
Length = 225
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ ++ + + SVS+VAV+K V++ R G AEN+ +
Sbjct: 1 MTIKENVKRILNNVDAAKAASSYSNQSVSVVAVTKSVEANLAREVFENGISHLAENRTEL 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ ++ IG+LQ KV ++++ D + K A +S +
Sbjct: 61 FLEKYEALKDC-EITWHLIGNLQRRKVKKVINYVDYFHALDSLKLAQEISKRAE---HLI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
+I+VN E K G ++ K+ + + + + GLM + P F +
Sbjct: 117 KCFIEVNISGEESKHGFSVDELKETLADFSELENIEIVGLMTMAPFDATESECNDIFGRM 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ E T+LSMGM+RD+E+AI +GAT VRIG+ F
Sbjct: 177 KELQVEISEMNLPKIPCTELSMGMSRDYEIAIKNGATFVRIGTEFF 222
>gi|188990801|ref|YP_001902811.1| hypothetical protein xccb100_1405 [Xanthomonas campestris pv.
campestris str. B100]
gi|167732561|emb|CAP50755.1| Conserved hypothetical protein [Xanthomonas campestris pv.
campestris]
Length = 227
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 73/214 (34%), Positives = 99/214 (46%), Gaps = 11/214 (5%)
Query: 17 SAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV 74
+AI A P D+ L+AVSK + + + GQ F EN +QEA K L+ +
Sbjct: 11 AAIQAATPPDTAPARLLAVSKTQPADAVAALAAQGQQAFGENYVQEAAAKIAQLQA-LQL 69
Query: 75 QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQK 134
+ IG LQSNK FD ++TV R K +LL+ L V IQVN E K
Sbjct: 70 EWHLIGHLQSNKADMASQCFDWVQTVDRAKLIALLARHRPDGRAPLNVLIQVNIDDEDSK 129
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPH--FYLLSEIA-----RECKL 186
G P L + GLM IP P + H F + + + +
Sbjct: 130 HGCAPEAIDVLAAEIATHPPLQLRGLMAIPAPFPEVTRRHQAFARMQALFATLRSQYPQA 189
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LSMGM+ DF AIA+GAT VR+G+ +FG+R
Sbjct: 190 DTLSMGMSADFADAIAAGATMVRVGTALFGQRNA 223
>gi|319892176|ref|YP_004149051.1| YggS [Staphylococcus pseudintermedius HKU10-03]
gi|317161872|gb|ADV05415.1| YggS [Staphylococcus pseudintermedius HKU10-03]
Length = 224
Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 102/228 (44%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ L + I + + ++A++K V + + A G F EN+++
Sbjct: 1 MSVKTNLAEIEHTITENVTF-REDPTRPHVIAITKYVTINRAKEAYEAGIRHFGENRIEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L DV + FIGSLQS KV E+++ D + + R+ A +S + +
Sbjct: 60 FLEKKAALPD--DVHMHFIGSLQSRKVKEVINDIDYLHALDRQSLAKEISKRAEHE---I 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E K GI + F+ + V GLM + P N + F L
Sbjct: 115 KCFVQVNVSGEASKHGIALEEVIPFIEKLVDYDHIRVVGLMTMAPYTDNEAELEDIFEKL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E + T+LSMGM+ D+ +A GAT VRIG+ + G+
Sbjct: 175 KNKRDEVQSLNLTYAPCTELSMGMSNDYHIATKKGATFVRIGTRLVGK 222
>gi|33860951|ref|NP_892512.1| hypothetical protein PMM0394 [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33639683|emb|CAE18853.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 212
Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 69/223 (30%), Positives = 112/223 (50%), Gaps = 14/223 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + N LQ+ KQ +V+L+AVSK SK+I++ + GQ F E++ QE
Sbjct: 1 MEISNYLQIKKQ-----------LPLNVNLLAVSKGFSSKEIKIINNLGQNDFGESRFQE 49
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A +K I L +++ FIG +Q+NK+ +IV F+ I +V + +S ++ R
Sbjct: 50 AIEKKILLDDLKNIKWHFIGRVQTNKIRKIVQNFEYIHSVDSYEKLLKISNVSFEEKRNP 109
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
V +QV + K G P + ++ + ++GLM I P + + F
Sbjct: 110 IVMLQVKLSDDPNKGGFNPKVLLEKWDQIKEFKSIKIKGLMTINPKGLSSIENIKLFKKC 169
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A KL SMGM+ D+E A+ +G+T +R+GS IFG R
Sbjct: 170 RYLADSLKLQDCSMGMSGDWEEAVKAGSTWLRLGSTIFGNRTY 212
>gi|237752208|ref|ZP_04582688.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229376450|gb|EEO26541.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 222
Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 71/219 (32%), Positives = 115/219 (52%), Gaps = 8/219 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L ++IE + I R + V LVAVSK ++I +CGQ F ENK+Q+ +
Sbjct: 5 LNQNLLEAIERIEKARIAVDR-RRIVQLVAVSKYSTQEEIATLYACGQRAFGENKVQDLQ 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD-VIETVSREKTASLLSLEMIKQSRFLP 121
+K L ++ FIGSLQSNK++ ++ L +++++ + A L + ++++ L
Sbjct: 64 QKASTLEALP-LEWHFIGSLQSNKINALLQLKPYLLQSLHSLELAQALQSRLERENQQLN 122
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
+QVN+ E+ KSG MP + + + + + GLM I + + F L
Sbjct: 123 ALLQVNSAKEVSKSGFMPEVALEAYARIKGECKNIKLCGLMSIGAHTEDKALVQKSFELT 182
Query: 178 SEIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + K LSMGM+ DFELAIA G+ VR+GS +F
Sbjct: 183 QNLFSQIKGAEVLSMGMSGDFELAIACGSNCVRLGSTLF 221
>gi|2308994|dbj|BAA21689.1| hypothetical protein similar to YPI1 or YPT5 [Corynebacterium
glutamicum]
Length = 221
Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 63/221 (28%), Positives = 100/221 (45%), Gaps = 15/221 (6%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+ +I+ + RP+ SV L+ V+K + I++ G EN+ QEA+ K + L
Sbjct: 2 QARIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQELGVTAVGENREQEARAKALELP- 60
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL----SLEMIKQSRF---LPVY 123
D+ IG +QS K + I + +V EK A L +L + + R LP +
Sbjct: 61 --DMDFHMIGQIQSKKANSIARWSAAVHSVDSEKIAEALGRGVALALERGDRTSDELPCF 118
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR- 182
IQ++ + + G +Q L EGLMC+PP +P+ F ++
Sbjct: 119 IQLSLDGDPSRGGTPLSQVTQLADCISDTTHLRFEGLMCVPPLGWDPEKAFSQARDVLSG 178
Query: 183 -ECKLT---KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E + S GM+ D AI G+T VR+G+ I G RP
Sbjct: 179 LEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRP 219
>gi|308184797|ref|YP_003928930.1| hypothetical protein HPSJM_05210 [Helicobacter pylori SJM180]
gi|308060717|gb|ADO02613.1| hypothetical protein HPSJM_05210 [Helicobacter pylori SJM180]
Length = 222
Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 74/220 (33%), Positives = 112/220 (50%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
K+ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 RQKIDALITKIEKARIAYSR-HHIVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ ++SL ++ ++ K A + L
Sbjct: 64 KMHSL-EHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGINLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG+MP +T + + +L ++GLMCI + + F
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKRLKLKGLMCIGAHADDEKKIEKSFTTTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ + K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDQIKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|21910707|ref|NP_664975.1| hypothetical protein SpyM3_1171 [Streptococcus pyogenes MGAS315]
gi|28895603|ref|NP_801953.1| hypothetical protein SPs0691 [Streptococcus pyogenes SSI-1]
gi|94988873|ref|YP_596974.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS9429]
gi|94992763|ref|YP_600862.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS2096]
gi|21904910|gb|AAM79778.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
gi|28810852|dbj|BAC63786.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|94542381|gb|ABF32430.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS9429]
gi|94546271|gb|ABF36318.1| Pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS2096]
Length = 223
Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + I S A R DSVS++AV+K VDS + G AEN++ +
Sbjct: 1 MDLLTNKKKIFETIRLSTEAANRTNDSVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L K V+ IG+LQ KV E+++ D + + A ++ +
Sbjct: 61 FLEKYDAL-KCMPVKWHLIGTLQRRKVKEVINYVDYFHALDSVRLALEINKRA---DHPV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K G ++ + + + ++ + GLM + PA + + F
Sbjct: 117 KCFLQVNISKEESKHGFNISEIDEAIEEIGKMEKIQLVGLMTMAPANASKESIITIFRQA 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ + +L T+LSMGM+ D+ +AI G+T +RIG F
Sbjct: 177 NQLRKNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFF 222
>gi|54112585|gb|AAV28926.1| NT02FT1551 [synthetic construct]
Length = 222
Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 66/203 (32%), Positives = 99/203 (48%), Gaps = 14/203 (6%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
L+AVSK KI GQ+ F EN QE ++K L ++ FIGSLQS K+
Sbjct: 23 RLLAVSKYQSIDKIEYLAGLGQLDFGENYFQELEQKAQKLP---HLRWHFIGSLQSRKIK 79
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
IV I++V + + + ++ + V++Q+N I KSG Q ++ V
Sbjct: 80 HIVKYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDHINKSGFESTQLEEVVAS 139
Query: 149 C---RQKYQLNVEGLMCIPPAMGNPKPHFYLLS--------EIARECKLTKLSMGMTRDF 197
+ L + GLMCIP P+ F + + + KL++LSMGM+ D+
Sbjct: 140 IMKAKSFMNLKIVGLMCIPAKTNAPEKSFAKMKHFFDTVNSRLNDDLKLSRLSMGMSADY 199
Query: 198 ELAIASGATSVRIGSGIFGERPC 220
LAI G+T VR+GS +FG R
Sbjct: 200 RLAIQYGSTDVRVGSSLFGARAT 222
>gi|309812660|ref|ZP_07706404.1| pyridoxal phosphate enzyme, YggS family [Dermacoccus sp. Ellin185]
gi|308433355|gb|EFP57243.1| pyridoxal phosphate enzyme, YggS family [Dermacoccus sp. Ellin185]
Length = 259
Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 98/228 (42%), Gaps = 12/228 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ + +I + A R D+ +LV V+K + G EN+ QE
Sbjct: 30 LQANLERVRVRIAAATSAAGRD-DAPTLVVVTKFFPVTDLVALADLGVGDVGENREQELV 88
Query: 63 KKWIPLRKE-----WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+K LR E + FIG +QS K I DV++++ R K LL +
Sbjct: 89 EKVDALRAERPDLIASPRRHFIGQIQSKKARRIARHADVVQSLDRLKLVPLLDAGAADRE 148
Query: 118 RFLPVYIQVNTGYEIQ-KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L +++QV + + G + + Q L + GLM + P P F
Sbjct: 149 NPLDIFVQVALERDGSGRGGAQETELHEVAAAVEQAPHLRLCGLMAVAPLGEEPAAAFSR 208
Query: 177 LSEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L+ + ++ + T LS GM+ D E A+ GAT +R+GS I G RP
Sbjct: 209 LAHVRQDFLANFPQATSLSAGMSGDLEDAVQIGATHLRVGSAILGSRP 256
>gi|296117543|ref|ZP_06836127.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium
ammoniagenes DSM 20306]
gi|295969274|gb|EFG82515.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium
ammoniagenes DSM 20306]
Length = 238
Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 68/223 (30%), Positives = 104/223 (46%), Gaps = 10/223 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ +Q IE + A R L+ V+K ++ I + G AEN+ QEA+
Sbjct: 18 LAAGLKETRQLIEKLSHEAGRDT-VPELLPVTKFHPAEDIALLAELGITDVAENREQEAR 76
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR-FLP 121
K L DV IG +Q+ K + + + +V EK A L+ + R LP
Sbjct: 77 AKAEELS---DVHFHMIGQVQTKKANHVARWAHSVHSVDTEKLAVALNRGVENAGRDVLP 133
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
V+IQV+ + + G+ + + + L++ GLM +PP + K F + E+A
Sbjct: 134 VFIQVSFDGDTARGGVPLDGVAELAQIIEDLPNLDLRGLMVVPPLDTDAKEVFTTVRELA 193
Query: 182 RECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ KLS GM+ D AIASG VR+G+GI G RP
Sbjct: 194 NKLGEQLERTMKLSAGMSADLADAIASGTDIVRVGTGIMGARP 236
>gi|307721258|ref|YP_003892398.1| alanine racemase domain-containing protein [Sulfurimonas
autotrophica DSM 16294]
gi|306979351|gb|ADN09386.1| alanine racemase domain protein [Sulfurimonas autotrophica DSM
16294]
Length = 224
Score = 215 bits (549), Expect = 3e-54, Method: Composition-based stats.
Identities = 60/215 (27%), Positives = 107/215 (49%), Gaps = 8/215 (3%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ +++E + + V +VAVSK ++ I+ + GQ F ENK+Q+ K K
Sbjct: 10 IDNVIRRVETARLKVS-DHLIVKIVAVSKYSTAEDIKRLYNIGQRAFGENKVQDLKAKAK 68
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L ++ ++ FIG+LQ NK++ ++ + + + + A L ++ ++ L +Q
Sbjct: 69 EL-EDLPLEWHFIGNLQKNKINNLLDINPSLFQALDSLELAEELQKKLKAKNMTLECLMQ 127
Query: 126 VNTGYEIQKSGIMPNQTK-DFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIA 181
+N+ E K G MP T + + + +N++G+M I + K F I
Sbjct: 128 INSAKEESKHGFMPEDTISAYTQIISECPNINLKGVMSIGAHSDDKQVVKKSFETTHAIY 187
Query: 182 REC-KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ T SMGM+ DFELAI G+ VR+GS +F
Sbjct: 188 KQLPNATICSMGMSGDFELAIECGSNMVRLGSIMF 222
>gi|227876863|ref|ZP_03994972.1| alanine racemase domain protein [Mobiluncus mulieris ATCC 35243]
gi|227842760|gb|EEJ52960.1| alanine racemase domain protein [Mobiluncus mulieris ATCC 35243]
Length = 281
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 66/267 (24%), Positives = 102/267 (38%), Gaps = 52/267 (19%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
+L ++++ +A + R V ++ VSKM I+ A++ G F EN+ Q+
Sbjct: 5 QERLVGIQERVAAAARASGREPRDVRILPVSKMHPISMIQAAMAAGAREFGENRPQDLAA 64
Query: 64 KWIPLRKEWD------------------------------------------VQLRFIGS 81
K L + IG+
Sbjct: 65 KAQELGANLGQSGSGNTGVLAGLDGVSAQPGIGGRGADLGLAPRESETKPDVPRWVMIGN 124
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQ NK IV+ ++++ + A LS + + R L V +QVN E K G+ P
Sbjct: 125 LQRNKAKLIVAYAAELQSLDSLRLAETLSRLLGEAGRELDVMVQVNISGEAVKHGVEPGV 184
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPA-----MGNPKPHFYLLSEIARE-----CKLTKLSM 191
DF L + G M + F L I + + LSM
Sbjct: 185 ALDFAGRVAALPGLRLTGFMGVAAPLSVVGESGVHEAFARLRAIRDAAVVSIPEASGLSM 244
Query: 192 GMTRDFELAIASGATSVRIGSGIFGER 218
GM+ DFE+AI G+T VR+GSG+FG+R
Sbjct: 245 GMSGDFEIAIVEGSTCVRLGSGLFGQR 271
>gi|169833346|ref|YP_001695046.1| YggS family pyridoxal phosphate protein [Streptococcus pneumoniae
Hungary19A-6]
gi|168995848|gb|ACA36460.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
Hungary19A-6]
Length = 223
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLNAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ DV IG+LQ KV +++ D + K A + R +
Sbjct: 61 FLEKYEALKDR-DVTWHLIGTLQRRKVKDVIQFVDYFHALDSVKLAEEIQKR---SDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K G + + + + ++ GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAT 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ +E + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQKEIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTAFF 222
>gi|326483235|gb|EGE07245.1| alanine racemase [Trichophyton equinum CBS 127.97]
Length = 301
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 80/281 (28%), Positives = 113/281 (40%), Gaps = 64/281 (22%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDS-------------------------VSLVAVSKMV 37
L L ++I ++ + V LVAVSK+
Sbjct: 18 LIANLSSVSKRIAAASNSRNNHHNETSTSSNPSPAAVTSTSDSNSPAAPPVRLVAVSKLK 77
Query: 38 DSKKIRVALS--CGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF- 94
+ I S + F EN +QE +K L +++ FIG LQSNK +
Sbjct: 78 PASDILALHSPPTSHLHFGENYMQELLEKSKALP--PEIRWHFIGGLQSNKCVTLAREVR 135
Query: 95 --DVIETVSREKTASLLSLEMIKQ--------------SRFLPVYIQVNTGYEIQKSGIM 138
+E+V EK ASLL ++ R L V++QVNT E KSGI
Sbjct: 136 GLWAVESVDTEKKASLLDKGWGERAEFKQKESEAGEPLDRRLRVFVQVNTSGEENKSGIQ 195
Query: 139 PNQ-TKDFVILCRQ-KYQLNVEGLMCIPPAM-------GNPKPHFYLLSEIAR----ECK 185
P + T + R+ +L ++GLM I N F L + +
Sbjct: 196 PGEPTLELCRFIREKCPRLKLQGLMTIGAIARSKATTPENENEDFACLRDTRDMVVEKLS 255
Query: 186 LT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L +LSMGM+ DFE AIA G+ VR+GS IFG RP +
Sbjct: 256 LKGEDTLELSMGMSNDFEGAIAMGSNQVRVGSTIFGARPPK 296
>gi|85077550|ref|XP_956018.1| hypothetical protein NCU03579 [Neurospora crassa OR74A]
gi|28881125|emb|CAD70296.1| conserved hypothetical protein [Neurospora crassa]
gi|28917059|gb|EAA26782.1| hypothetical protein NCU03579 [Neurospora crassa OR74A]
Length = 262
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 79/245 (32%), Positives = 109/245 (44%), Gaps = 35/245 (14%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQV---IFAENKL 58
+L ++LQ + +I A RP V LVAVSK+ + I QV F EN
Sbjct: 15 ALVSQLQSVQDRILAVAK--GRP---VRLVAVSKLKPANDILALHQAPQVQHAHFGENYA 69
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMIK- 115
QE ++K L + +Q FIG LQ+ + + ++ K A L+ +
Sbjct: 70 QELQQKAELLPR--SIQWHFIGGLQTTHCKSLARIPNLWAVSSLDTLKKAQTLNRVRGEV 127
Query: 116 -----QSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILC-RQKYQLNVEGLMCIPPAM- 167
L V++QVNT E KSG P +T D + LN+ GLM I
Sbjct: 128 ISSDPSIPKLNVHVQVNTSGEESKSGCSPGQETVDLCKAIVTECPHLNLLGLMTIGAIAR 187
Query: 168 ------GNPKPHFYLLSE----IARECKLT----KLSMGMTRDFELAIASGATSVRIGSG 213
N F +L E + +E L +LSMGM+ DFE AIA G+ VR+GS
Sbjct: 188 SKATTPENENEDFVVLREQRDLVEKELGLDKGSLELSMGMSEDFEGAIAMGSGEVRVGST 247
Query: 214 IFGER 218
IFGER
Sbjct: 248 IFGER 252
>gi|167755110|ref|ZP_02427237.1| hypothetical protein CLORAM_00614 [Clostridium ramosum DSM 1402]
gi|237733463|ref|ZP_04563944.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|167705160|gb|EDS19739.1| hypothetical protein CLORAM_00614 [Clostridium ramosum DSM 1402]
gi|229383498|gb|EEO33589.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 213
Score = 215 bits (548), Expect = 4e-54, Method: Composition-based stats.
Identities = 54/199 (27%), Positives = 92/199 (46%), Gaps = 11/199 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVA +K V ++I G F EN++Q +K+ + IG+LQ N
Sbjct: 16 GNAKLVAATKYVGIEEINELEKLGVKYFGENRVQAFLEKYEKYHGAQ--EFHMIGTLQPN 73
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV I+ +I ++ + + K +P+ IQVN E K G + +D
Sbjct: 74 KVKYIIDKVSLIHSIDSYSLIKEVEKQAKKHDLKMPILIQVNVAKEESKHGFAVEEIEDV 133
Query: 146 VILCRQKYQLNVEGLMCIPPAMG--NPKPHFYLLSEIAREC-------KLTKLSMGMTRD 196
++ L V+GLM + P + + +F E+ + ++T+LSMGM+ D
Sbjct: 134 FDYLKECPHLIVKGLMMMAPHIDSNDTAVYFKQTKELFDQLNCKYSEFEMTELSMGMSND 193
Query: 197 FELAIASGATSVRIGSGIF 215
+ A+ GAT +R+GS +F
Sbjct: 194 YHEALKYGATMIRVGSALF 212
>gi|254456661|ref|ZP_05070090.1| conserved hypothetical protein TIGR00044 [Candidatus Pelagibacter
sp. HTCC7211]
gi|207083663|gb|EDZ61089.1| conserved hypothetical protein TIGR00044 [Candidatus Pelagibacter
sp. HTCC7211]
Length = 182
Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats.
Identities = 74/180 (41%), Positives = 108/180 (60%), Gaps = 1/180 (0%)
Query: 40 KKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL-RFIGSLQSNKVSEIVSLFDVIE 98
+I + G + F ENK+QEA KW ++K IG LQ+NKV +V LFD I
Sbjct: 2 SEINPLIENGHLHFGENKVQEAVDKWSDIKKLKKSLKLHMIGKLQTNKVKYVVPLFDYIH 61
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
++ K A ++ E IK+++ L ++IQVN G E QKSGI + K+F C ++ LN+
Sbjct: 62 SLDNIKLAEKIASEQIKKNKNLKIFIQVNIGNESQKSGINITELKNFYEKCTRELNLNII 121
Query: 159 GLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
GLMC+PP G+ K +F + E+ + + LSMGM+ D+ A+ GAT +RIGS IFG+R
Sbjct: 122 GLMCLPPQHGSVKNYFNEMVELKKILNVEDLSMGMSEDYLEAVGCGATYIRIGSKIFGDR 181
>gi|109947055|ref|YP_664283.1| hypothetical protein Hac_0453 [Helicobacter acinonychis str.
Sheeba]
gi|109714276|emb|CAJ99284.1| conserved hypothetical protein [Helicobacter acinonychis str.
Sheeba]
Length = 222
Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats.
Identities = 71/220 (32%), Positives = 112/220 (50%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
K+ KIE + I R V +VA+SK + I+ +C Q F ENK+Q+ K
Sbjct: 5 RQKIDFLIAKIEKARIAYSR-HHIVKIVAISKNAPLEAIQHYYNCSQRAFGENKVQDLKT 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ +GSLQ NK++ ++SL ++ ++ + A + L
Sbjct: 64 KMHYL-EHLPLEWHMVGSLQENKINTLLSLKPALLHSLDSLELALKIEKRCKTLGVTLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG+ P +T DF + + ++GLMCI + + F +
Sbjct: 123 LLQVNSAYEKSKSGVRPEETLDFYSQISKTCKHIKLKGLMCIGAHTDDEAKIEKSFIMTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ + K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDQLKNASILSMGMSNDFELAIACGANLLRIGSFLFKE 222
>gi|281492481|ref|YP_003354461.1| pyridoxal-5'-phosphate family protein [Lactococcus lactis subsp.
lactis KF147]
gi|281376145|gb|ADA65636.1| Pyridoxal-5'-phosphate family protein [Lactococcus lactis subsp.
lactis KF147]
Length = 225
Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ ++ + + SVS+VAV+K VD+ R G AEN+ +
Sbjct: 1 MTIKENVKRILSNVDAAKAASSYSNQSVSVVAVTKSVDANLAREVFENGVSHLAENRTEL 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L K+ ++ IGSLQ KV ++++ D + K A ++ +
Sbjct: 61 FLEKYEAL-KDLEITWHLIGSLQRRKVKQVINYVDYFHALDSLKLAQEINKRAE---HTI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
+I++N E K G N+ + + + + + GLM + P F +
Sbjct: 117 KCFIELNISGEESKHGFSVNELMEILPEFSELENIEIVGLMTMAPFDATESECNDIFGRM 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ E T+LSMGM+RD+E+AI +GAT VRIG+ F
Sbjct: 177 KKLQVEISEMNLSRIPCTELSMGMSRDYEIAIKNGATFVRIGTEFF 222
>gi|15673850|ref|NP_268025.1| hypothetical protein L120355 [Lactococcus lactis subsp. lactis
Il1403]
gi|12724900|gb|AAK05966.1|AE006416_11 conserved hypothetical protein [Lactococcus lactis subsp. lactis
Il1403]
gi|326407361|gb|ADZ64432.1| pyridoxal-5'-phosphate family protein [Lactococcus lactis subsp.
lactis CV56]
Length = 225
Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ ++ + + SVS+VAV+K VD+ R G AEN+ +
Sbjct: 1 MTIKENVKRILSNVDAAKAASSYSNQSVSVVAVTKSVDANLAREVFENGVSHLAENRTEL 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L K+ ++ IG+LQ KV ++++ D + K A ++ +
Sbjct: 61 FLEKYEAL-KDLEITWHLIGNLQRRKVKQVINYVDYFHALDSLKLAQEINKRAE---HTI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
+I++N E K G N+ + + + + + GLM + P F +
Sbjct: 117 KCFIELNISGEESKHGFSVNELMEILPEFSELENIEIVGLMTMAPFDATESECNDIFGRM 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ E T+LSMGM+RD+E+AI +GAT VRIG+ F
Sbjct: 177 KKLQVEISEMNLSRIPCTELSMGMSRDYEIAIKNGATFVRIGTEFF 222
>gi|328676168|gb|AEB27038.1| hypothetical protein FNFX1_0090 [Francisella cf. novicida Fx1]
Length = 222
Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats.
Identities = 67/203 (33%), Positives = 102/203 (50%), Gaps = 14/203 (6%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
L+AVSK KI S GQ+ F EN QE ++K L ++ FIGSLQS K+
Sbjct: 23 RLLAVSKYQVIDKIEYLASLGQLDFGENYFQELEQKAQKLP---HLRWHFIGSLQSRKIK 79
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
IV I++V + + + ++ + V++Q+N +I KSG Q ++ V
Sbjct: 80 HIVRYASSIQSVENIEHLEKIDKAAGQIAKIVDVFLQINIDDDINKSGFESTQLEEVVAS 139
Query: 149 C---RQKYQLNVEGLMCIPPAMGNPKPHFYLLS--------EIARECKLTKLSMGMTRDF 197
+ L + GLMCIP +P+ F + + + KL++LSMGM+ D+
Sbjct: 140 IMKAKSFINLKIVGLMCIPSKSNSPEKSFAKMKHFFDTVNSRLNDDLKLSRLSMGMSADY 199
Query: 198 ELAIASGATSVRIGSGIFGERPC 220
LAI G+T VR+GS +FG R
Sbjct: 200 TLAIQYGSTDVRVGSSLFGARAT 222
>gi|227548919|ref|ZP_03978968.1| alanine racemase [Corynebacterium lipophiloflavum DSM 44291]
gi|227079008|gb|EEI16971.1| alanine racemase [Corynebacterium lipophiloflavum DSM 44291]
Length = 241
Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats.
Identities = 66/234 (28%), Positives = 98/234 (41%), Gaps = 16/234 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR---VALSCGQVIFAENKLQ 59
L LQ +++I + A RP SV L+ VSK I G + EN+ Q
Sbjct: 7 LAANLQRVREQIGEAVEAAGRPAGSVRLIPVSKFHPVTDIVALGELGELGVDLVGENREQ 66
Query: 60 EAKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL----EMI 114
EA+ K L + V++ IG +QS K + + + +V K AS L +
Sbjct: 67 EARAKAEELAQAGSAVRIAMIGQIQSKKANAVARWAAEVHSVDSVKLASGLDRGMELALE 126
Query: 115 KQSRF---LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171
+ R L +QV+ + + G+ + L + GLM +PP +
Sbjct: 127 RGDRTTTLLRCLVQVSDDGDTARGGVAYGGLDEVADAIESAQHLELGGLMVVPPLGADET 186
Query: 172 PHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F E A LS GM+ DFE AIA G+ VR+G+G+FG RP
Sbjct: 187 AVFSRARERADALGQRFGRPMDLSAGMSGDFEKAIACGSDIVRVGTGVFGARPV 240
>gi|170090438|ref|XP_001876441.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647934|gb|EDR12177.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 270
Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats.
Identities = 71/256 (27%), Positives = 110/256 (42%), Gaps = 44/256 (17%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +++ + + P + +LVAVSK+ + I GQ+ F EN +QE +
Sbjct: 14 LVESLAEIRARVQAA--SSSSPGHTPTLVAVSKIKPASDILACYEAGQLDFGENYVQELE 71
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMI-KQSRF 119
+K L D++ FIG+LQSNK + ++T++ K AS L+ + +
Sbjct: 72 EKARVLPA--DIRWHFIGTLQSNKAKTLASIPNLHAVQTLNSTKAASALNKALPSDRPYP 129
Query: 120 LPVYIQVNTGYEIQKSGIM---------PNQTKDFVILC-RQKYQLNVEGLMCIPPAMG- 168
L V+IQVNT E KSG+ ++ + +L +EGLM I
Sbjct: 130 LRVFIQVNTSGETSKSGLDTLSSASDLDSSELAQLARYVLTECPKLRLEGLMTIGALELS 189
Query: 169 ------NPKPHFYLLSEIAREC--------------------KLTKLSMGMTRDFELAIA 202
F L E LSMGM+ DFE A+
Sbjct: 190 LSASEVEKNADFERLKETRDVLDGYLGGLSGDGEKSWGRQGWGGLTLSMGMSSDFEAALK 249
Query: 203 SGATSVRIGSGIFGER 218
+G+ VR+G+GIFG+R
Sbjct: 250 AGSDIVRVGTGIFGQR 265
>gi|224476290|ref|YP_002633896.1| hypothetical protein Sca_0801 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420897|emb|CAL27711.1| Predicted enzyme with a TIM-barrel fold [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 224
Score = 214 bits (547), Expect = 5e-54, Method: Composition-based stats.
Identities = 64/199 (32%), Positives = 98/199 (49%), Gaps = 16/199 (8%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
++AV+K V ++ + A G F EN+L+ K K L D + FIG+LQS KV E
Sbjct: 29 VIAVTKYVTIERAKEAYDAGIRNFGENRLEGFKAKKEALPD--DAIMHFIGTLQSRKVKE 86
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
+V D + + R+ A ++ +R + ++Q+N E K GI N DF+ +
Sbjct: 87 VVDDIDYLHALDRKSLAKEINKRA---TRPVNCFVQINVSGEESKHGIALNDVNDFIEML 143
Query: 150 RQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK--------LTKLSMGMTRDFE 198
Q + V GLM + P + + F L E E T+LSMGM+ D+E
Sbjct: 144 SQYENIRVVGLMTMAPFTEDEAQIRQVFKQLREKRDEINKLNLEYAPCTELSMGMSNDYE 203
Query: 199 LAIASGATSVRIGSGIFGE 217
+A GAT VRIG+ + G+
Sbjct: 204 IATEEGATYVRIGTKLVGK 222
>gi|307705385|ref|ZP_07642244.1| conserved hypothetical protein [Streptococcus mitis SK597]
gi|307621048|gb|EFO00126.1| conserved hypothetical protein [Streptococcus mitis SK597]
Length = 223
Score = 214 bits (547), Expect = 6e-54, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVNK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ DV IG+LQ KV +++ D + K A + R +
Sbjct: 61 FLEKYEALKNR-DVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAEEIQKR---SDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
+IQVN E K G + + + + ++ GLM + P + + F
Sbjct: 117 KCFIQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAT 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTAFF 222
>gi|242794148|ref|XP_002482313.1| alanine racemase family protein, putative [Talaromyces stipitatus
ATCC 10500]
gi|218718901|gb|EED18321.1| alanine racemase family protein, putative [Talaromyces stipitatus
ATCC 10500]
Length = 340
Score = 214 bits (547), Expect = 6e-54, Method: Composition-based stats.
Identities = 84/283 (29%), Positives = 113/283 (39%), Gaps = 64/283 (22%)
Query: 2 SLGNKLQVFKQKIENSA----------ILAKRPKDS-VSLVAVSKMVDSKKIRVALSCG- 49
+L L +I ++ RP D V LVAVSK+ + I S
Sbjct: 52 TLLTNLNNVLARISAASSIFQTTSTSTTRRHRPADKPVRLVAVSKLKPASDILALYSPSS 111
Query: 50 ------------------QVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV 91
Q+ F EN QE +K L + ++ FIG LQSNK + +
Sbjct: 112 FPSDETPTATTTTPSATQQLHFGENYFQELLEKSRILPR--GIRWHFIGGLQSNKCTSLA 169
Query: 92 SLF---DVIETVSREKTASLLSLEMIKQS----------RFLPVYIQVNTGYEIQKSGIM 138
+E+V EK A LL ++ + L V++QVNT E KSG+
Sbjct: 170 RDVRGLWAVESVDTEKKAKLLDKGWGERDFTSLSTEEQQQKLRVFVQVNTSGEENKSGVE 229
Query: 139 PNQTKDFVILCR-QKYQLNVEGLMCIPPAM-------GNPKPHFYLLSEIA----RECKL 186
P T R L ++GLM I F L E RE L
Sbjct: 230 PALTPALCRYIRDNCPGLKLQGLMTIGAIARSKETTADKENEDFVTLIETREVVVRELGL 289
Query: 187 TK-------LSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
T+ LSMGM+ DFE AIA G+ VR+G+ IFGERP +
Sbjct: 290 TEQEADDFELSMGMSSDFEGAIALGSDQVRVGTTIFGERPVKA 332
>gi|40217453|emb|CAE46386.1| conserved hypothetical protein [uncultured archaeon]
gi|268323836|emb|CBH37424.1| conserved hypothetical protein containing N-terminal domain of
alanine racemase [uncultured archaeon]
Length = 224
Score = 214 bits (547), Expect = 6e-54, Method: Composition-based stats.
Identities = 67/205 (32%), Positives = 106/205 (51%), Gaps = 13/205 (6%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V L A +K +++I A+ G I EN +QEA++ + + + V+ FIG LQ
Sbjct: 19 PKEVVLEAAAKTRTTEEIMAAIEAGITIVGENYIQEAERAFKVIGRM--VKWHFIGHLQR 76
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV + V LFD+IET+ A ++ K + +P+ I+VN+G E +K G++P +
Sbjct: 77 NKVKKAVDLFDLIETIDSFSIAEEINRVSSKIGKIMPILIEVNSGREPRKFGVLPEDVDE 136
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECK--------LTKLSMGM 193
V+ + +EGLM + P + + +F EI + K + LSMGM
Sbjct: 137 LVVKISALASVKIEGLMTMGPYEEDIEKSRLYFRETKEIFEQIKKSGIPAVDMRYLSMGM 196
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ + +AI GA VR+G GIFG R
Sbjct: 197 SDSYIIAIEEGANIVRVGIGIFGPR 221
>gi|19746469|ref|NP_607605.1| hypothetical protein spyM18_1536 [Streptococcus pyogenes MGAS8232]
gi|71903849|ref|YP_280652.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS6180]
gi|94990773|ref|YP_598873.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS10270]
gi|94994751|ref|YP_602849.1| Pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS10750]
gi|139473459|ref|YP_001128175.1| hypothetical protein SpyM50604 [Streptococcus pyogenes str.
Manfredo]
gi|209559683|ref|YP_002286155.1| hypothetical protein Spy49_1172c [Streptococcus pyogenes NZ131]
gi|306827035|ref|ZP_07460333.1| YggS family pyridoxal phosphate enzyme [Streptococcus pyogenes ATCC
10782]
gi|19748673|gb|AAL98104.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|71802944|gb|AAX72297.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS6180]
gi|94544281|gb|ABF34329.1| Pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS10270]
gi|94548259|gb|ABF38305.1| Pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS10750]
gi|134271706|emb|CAM29939.1| conserved hypothetical protein [Streptococcus pyogenes str.
Manfredo]
gi|209540884|gb|ACI61460.1| hypothetical protein Spy49_1172c [Streptococcus pyogenes NZ131]
gi|304430781|gb|EFM33792.1| YggS family pyridoxal phosphate enzyme [Streptococcus pyogenes ATCC
10782]
Length = 223
Score = 214 bits (547), Expect = 6e-54, Method: Composition-based stats.
Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + I S A R DSVS++AV+K VDS + G AEN++ +
Sbjct: 1 MDLLTNKKKIFETIRLSTEAANRTNDSVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L K V+ IG+LQ KV E+++ D + + A ++ +
Sbjct: 61 FLEKYDAL-KYMPVKWHLIGTLQRRKVKEVINYVDYFHALDSVRLALEINKRA---DHPV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K G ++ + + + ++ + GLM + PA + + F
Sbjct: 117 KCFLQVNISKEESKHGFNISEIDEAIEEIGKMEKIQLVGLMTMAPANASKESIITIFRQA 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ + +L T+LSMGM+ D+ +AI G+T +RIG F
Sbjct: 177 NQLRKNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFF 222
>gi|317182312|dbj|BAJ60096.1| hypothetical protein HPF57_1022 [Helicobacter pylori F57]
Length = 222
Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats.
Identities = 73/220 (33%), Positives = 110/220 (50%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 SQRIDTLIAKIEKARIAYSR-HHIVKIVAVSKDASLEAIQNYYNCSQRAFGENKVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ ++SL ++ ++ K A + L
Sbjct: 64 KMHSL-EHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG+MP +T + + L ++GLMCI + + F
Sbjct: 123 LLQVNSAYEKSKSGVMPEETLEIYSQISETCKHLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|225859420|ref|YP_002740930.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
70585]
gi|225720359|gb|ACO16213.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
70585]
Length = 223
Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSANRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ DV IG+LQ KV +++ D + K A + R +
Sbjct: 61 FLEKYEALKDR-DVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAGEIQKR---SDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K G + + + + ++ GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAT 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|70726728|ref|YP_253642.1| hypothetical protein SH1727 [Staphylococcus haemolyticus JCSC1435]
gi|68447452|dbj|BAE05036.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 222
Score = 214 bits (546), Expect = 6e-54, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 107/228 (46%), Gaps = 17/228 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + L+ + +I++ ++ +++AV+K V + + A G F EN+L+
Sbjct: 1 MDVKQNLRNIESEIQSHFKNSE-ASTLPNVIAVTKYVTIDRAKEAYDVGLRHFGENRLEG 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L DV + FIGSLQS KV E+++ D + + R A ++ +
Sbjct: 60 FLEKKSALPN--DVTMHFIGSLQSRKVKEVINEIDYLHALDRLSLAKEINKRA---DHEI 114
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+IQVN E K GI N+ F+ +Q ++ + GLM + P + + F L
Sbjct: 115 ACFIQVNVSGEESKHGIALNEVNHFIEQIQQYDKIKIVGLMTMAPYTEDTAYIRQLFKQL 174
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E K LSMGM+ D+ +A+ GA+ +RIG+ + GE
Sbjct: 175 RVKRDEIKDLNLDYAPCHYLSMGMSNDYAIAVEEGASFIRIGTKLVGE 222
>gi|149011473|ref|ZP_01832720.1| ylmE protein [Streptococcus pneumoniae SP19-BS75]
gi|147764463|gb|EDK71394.1| ylmE protein [Streptococcus pneumoniae SP19-BS75]
Length = 223
Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 107/226 (47%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD LS G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLSLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ DV IG+LQ KV +++ D + K A + R +
Sbjct: 61 FLEKYEALKDR-DVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAGEIQKR---SDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K G + + + + ++ GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|189204762|ref|XP_001938716.1| alanine racemase family protein (ISS) [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985815|gb|EDU51303.1| alanine racemase family protein (ISS) [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 269
Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats.
Identities = 72/247 (29%), Positives = 104/247 (42%), Gaps = 34/247 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCG---QVIFAENKLQ 59
L + +I+ ++ V L+AVSK+ + I F EN +Q
Sbjct: 15 LAENISTISSRIKAASK----DNKQVRLIAVSKLKPANDILALHQQPDPTHTHFGENYVQ 70
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV---SLFDVIETVSREKTASLLSL----- 111
E +K L + ++ IG LQSNK ++ + +V EK A+ L
Sbjct: 71 ELIEKSKLLPRT--IRWHMIGGLQSNKCKQLAEQIPNLWCVSSVDSEKKANELEKGRKAL 128
Query: 112 -EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAM-- 167
E + L V +QVNT E +KSG+ P+ + L + GLM I
Sbjct: 129 LEKDNSAEKLRVKVQVNTSGEKEKSGVEPSDAIILCRQIIEKCPHLQLSGLMTIGAIARS 188
Query: 168 -----GNPKPHFYLLSE----IARECKLTK----LSMGMTRDFELAIASGATSVRIGSGI 214
N F L E +A+E + LSMGM+ DFE AI G+ VR+GS I
Sbjct: 189 RATTPENENEDFVALRETRDKVAKELGWEEGQLELSMGMSADFEGAIRMGSDEVRVGSEI 248
Query: 215 FGERPCQ 221
FGERP +
Sbjct: 249 FGERPQK 255
>gi|227543139|ref|ZP_03973188.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51866]
gi|227181127|gb|EEI62099.1| alanine racemase [Corynebacterium glucuronolyticum ATCC 51866]
Length = 233
Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats.
Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 16/228 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ LQ +Q+I + A R D V L+ V+K + + + S G EN+ QEAK
Sbjct: 7 IAAGLQRVRQRIAEAKAAAGR-TDEVCLLPVTKFHPASDVEILHSLGIEAVGENRDQEAK 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL-------EMIK 115
KK + +G +Q+ K + + +++V L +
Sbjct: 66 KKAAEFPS---MAFHMLGQIQTKKANSVARWASAVQSVDSLTLVQALDRGMQLALDRGDR 122
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ L VY+Q++ + + G++ V L + GLMC+PP + F
Sbjct: 123 TTETLDVYVQLSLDGDESRGGVIAADVPFLVEAIEGSTHLRLVGLMCVPPVASDADEAFA 182
Query: 176 LLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ ++ + S GM+ D E+AI +G+T VR+G+ I G R
Sbjct: 183 TALDVKQDLDARAGHPLEFSAGMSADLEVAIKNGSTLVRVGTDILGPR 230
>gi|148988712|ref|ZP_01820145.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
gi|168491452|ref|ZP_02715595.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC0288-04]
gi|147925913|gb|EDK76988.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP6-BS73]
gi|183574205|gb|EDT94733.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC0288-04]
gi|301794646|emb|CBW37097.1| conserved hypothetical protein [Streptococcus pneumoniae INV104]
Length = 223
Score = 214 bits (546), Expect = 7e-54, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ DV IG+LQ KV +++ D + K A + R +
Sbjct: 61 FLEKYEALKDR-DVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAGEIQKR---SDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K G + + + + ++ GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAT 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|257466117|ref|ZP_05630428.1| proline synthetase associated protein [Fusobacterium gonidiaformans
ATCC 25563]
gi|315917274|ref|ZP_07913514.1| proline synthetase associated protein [Fusobacterium gonidiaformans
ATCC 25563]
gi|313691149|gb|EFS27984.1| proline synthetase associated protein [Fusobacterium gonidiaformans
ATCC 25563]
Length = 226
Score = 214 bits (545), Expect = 9e-54, Method: Composition-based stats.
Identities = 56/226 (24%), Positives = 111/226 (49%), Gaps = 17/226 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++ ++++ + + V ++AVSK + ++++ L G + EN++Q +
Sbjct: 4 IEERIKEIYEEVKQYSPY----PEKVKVIAVSKYLTAQEMLPYLETGIITLGENRVQVIQ 59
Query: 63 KKWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K+ L ++ FIG+LQ NKV IV +I +V++ A ++ +M +
Sbjct: 60 EKYEELSTYPFAKSLEWHFIGNLQKNKVKYIVDKVSMIHSVNKLSLAEEINKKMEALGKK 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
+PV I+VN E K G + + + +++ GLM + P + + F
Sbjct: 120 MPVLIEVNVSGEESKEGYEVLEAEKDLPKLLNLKNISICGLMTMAPFTEDIEEQRRVFQK 179
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L + + LT+LSMGM+ D+++A+ GAT +R+G IF
Sbjct: 180 LRTLKEDWNEKYFQGSLTELSMGMSNDYKIALQEGATMIRLGRKIF 225
>gi|149006734|ref|ZP_01830420.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
gi|147761649|gb|EDK68613.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP18-BS74]
Length = 223
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSANRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ DV IG+LQ KV +++ D + K A + R +
Sbjct: 61 FLEKYEALKDR-DVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAGEIQKR---SDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K G + + + ++ GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFSREELLEILPELAGLDKIEYVGLMTMAPFEASSEQLKEIFKAA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQREIQEKQIPNIPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|326475792|gb|EGD99801.1| alanine racemase [Trichophyton tonsurans CBS 112818]
Length = 301
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 80/281 (28%), Positives = 114/281 (40%), Gaps = 64/281 (22%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDS-------------------------VSLVAVSKMV 37
L L ++I ++ + V LVAVSK+
Sbjct: 18 LIANLSSVSKRIAAASNSRNNHHNETSTSSNPSPAAVTSTSDSNSPAAPPVRLVAVSKLK 77
Query: 38 DSKKIRVALS--CGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF- 94
+ I S + F EN +QE +K L +++ FIG LQSNK +
Sbjct: 78 PASDILALHSPPTSHLHFGENYMQELLEKSKALP--PEIRWHFIGGLQSNKCVTLAREVR 135
Query: 95 --DVIETVSREKTASLLSLEMIKQ--------------SRFLPVYIQVNTGYEIQKSGIM 138
+E+V EK ASLL ++ R L V++QVNT E KSGI
Sbjct: 136 GLWAVESVDTEKKASLLDKGWGERAEFKQKESEAGEPLDRRLRVFVQVNTSGEENKSGIQ 195
Query: 139 PNQ-TKDFVILCRQ-KYQLNVEGLMCIPPAM-------GNPKPHFYLLSEIAR----ECK 185
P + T + R+ +L ++GLM I N F L + +
Sbjct: 196 PGEPTLELCRFIREKCPRLKLQGLMTIGAIARSKATTPENENEDFACLRDTRDMVVEKLS 255
Query: 186 LT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L +LSMGM+ DFE AIA G++ VR+GS IFG RP +
Sbjct: 256 LKGEDTLELSMGMSNDFEGAIAMGSSQVRVGSTIFGARPPK 296
>gi|257452084|ref|ZP_05617383.1| proline synthetase associated protein [Fusobacterium sp. 3_1_5R]
gi|317058633|ref|ZP_07923118.1| proline synthetase associated protein [Fusobacterium sp. 3_1_5R]
gi|313684309|gb|EFS21144.1| proline synthetase associated protein [Fusobacterium sp. 3_1_5R]
Length = 226
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 55/226 (24%), Positives = 111/226 (49%), Gaps = 17/226 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++ ++++ + + V ++AVSK + ++++ L G + EN++Q +
Sbjct: 4 IEERIKEIYEEVKQYSPY----PEKVKVIAVSKYLTAQEMLPYLETGIITLGENRVQVIQ 59
Query: 63 KKWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K+ L ++ FIG+LQ NKV I +I +V++ A ++ +M +
Sbjct: 60 EKYEELSTYPFAKSLEWHFIGNLQKNKVKYIADKVSMIHSVNKLSLAEEINKKMEALGKK 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
+PV I+VN E K G + + + +++ GLM + P + + F+
Sbjct: 120 MPVLIEVNVSGEESKEGYEVLEAEKDLPKLLNLKNISICGLMTMAPFTEDIEEQRRVFHK 179
Query: 177 LSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L + + LT+LSMGM+ D+++A+ GAT +R+G IF
Sbjct: 180 LRTLKEDWNEKYFQGSLTELSMGMSNDYKIALQEGATMIRLGRKIF 225
>gi|52548657|gb|AAU82506.1| conserved hypothetical protein [uncultured archaeon GZfos18B6]
Length = 224
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 13/205 (6%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V L A +K +++ A+ G I EN +QEA++ + + + V FIG LQ
Sbjct: 19 PKEVVLEAAAKTRTTEETLAAIEAGITIVGENYIQEAERAFEVIGRV--VNWHFIGHLQR 76
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV + V LFD+IET+ A ++ K + +P+ I+VN+G E QK G+ P ++
Sbjct: 77 NKVKKAVELFDLIETIDSFPIAEEINRVSSKIGKIMPILIEVNSGREPQKFGVFPEDVEE 136
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECK--------LTKLSMGM 193
V+ + + GLM + P + + +F EI K + LSMGM
Sbjct: 137 LVVKISALASVKIVGLMTMGPYEEDIEKSRSYFRAAKEIFERIKKSGIPSVDMRFLSMGM 196
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ + +AI GA +R+G+GIFG R
Sbjct: 197 SDSYNIAIEEGANIIRVGTGIFGPR 221
>gi|156064729|ref|XP_001598286.1| hypothetical protein SS1G_00372 [Sclerotinia sclerotiorum 1980]
gi|154691234|gb|EDN90972.1| hypothetical protein SS1G_00372 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 265
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 77/247 (31%), Positives = 114/247 (46%), Gaps = 34/247 (13%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQE 60
+L + Q +++ N+A +V LVAVSK+ + I F EN QE
Sbjct: 12 TLISAFQSVSERVSNAAG-----TRNVRLVAVSKLKPATDILALHEQANVEHFGENYAQE 66
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS---LFDVIETVSREKTASLLSLEMI--- 114
+K L + +++ FIG LQSNK + S ++ +V +K AS LS+
Sbjct: 67 LMEKAEILPR--NIKWHFIGGLQSNKCKPLASTISNLYLVSSVDSQKKASQLSIGRSLLP 124
Query: 115 ------KQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVI-LCRQKYQLNVEGLMCIPPA 166
L ++IQVNT E KSG+ P +T + + + L + GLM I
Sbjct: 125 VPADSSSHPSPLNIHIQVNTSGESSKSGVTPGKETTELCKYVIEECPFLKLVGLMTIGAI 184
Query: 167 ------MGNPKPHFYLLSE----IARECKLT--KLSMGMTRDFELAIASGATSVRIGSGI 214
G F +L E + +E L +LSMGM+ DFE AI G+ VR+GS I
Sbjct: 185 ARSQMKEGEENEDFIVLREERDRVEKELGLEGLELSMGMSEDFEEAIRQGSGEVRVGSTI 244
Query: 215 FGERPCQ 221
FG+RP +
Sbjct: 245 FGQRPAK 251
>gi|91070350|gb|ABE11267.1| conserved hypothetical protein [uncultured Prochlorococcus marinus
clone HF10-88F10]
Length = 211
Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 64/217 (29%), Positives = 104/217 (47%), Gaps = 13/217 (5%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
K KI +V+++AVSK S++I + GQ F E+K+QEA +K
Sbjct: 4 ANYLKIKNKI----------PSNVNILAVSKGFKSQEIMTIQNIGQNDFGESKVQEAFEK 53
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ L+ + FIG +QSNK+ +IV F I +V + +S ++ + + +
Sbjct: 54 QLTLKDLKQINWHFIGRIQSNKIRKIVQNFKYIHSVDSFEKLQKISNISREEKKKPLIML 113
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIA 181
QV + K G P ++ +++ GLM I P + K + F +A
Sbjct: 114 QVKLRDDPTKGGFNPEFLILKWREIQELKNISLTGLMTINPKGLSSKENLGLFKKCRALA 173
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+L SMGM+ D+E AI +G+T +R+GS IFG R
Sbjct: 174 DSLQLPDCSMGMSGDWEEAIDAGSTWLRLGSLIFGGR 210
>gi|296120723|ref|YP_003628501.1| alanine racemase domain protein [Planctomyces limnophilus DSM 3776]
gi|296013063|gb|ADG66302.1| alanine racemase domain protein [Planctomyces limnophilus DSM 3776]
Length = 258
Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 34/243 (13%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L+ +Q+I S + R + V+L+AV+K V + I G E++ Q +
Sbjct: 2 NLKSVEQEIIRSCEKSGRLPNEVTLIAVTKYVHAPVIAALYDLGVRDVGESRPQNLALRR 61
Query: 66 IPLRKEW---------------DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS 110
+ + D++ IG LQ NK VS D I + E+ + L
Sbjct: 62 CEVEALFPSTTSGSTRDEGTLADLKWHLIGHLQRNKAELAVSKADAIHSCDSERLLTRLD 121
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL--------CRQKYQLNVEGLMC 162
+ R LP+++++N E+ K G P++ + + C + L V GLM
Sbjct: 122 QLLSATPRPLPLFLEINISGEVSKHGFTPDEARAWWRAQAVERPAGCMAQSHLPV-GLMT 180
Query: 163 IPPAMGNPKPH---FYLLSEIA-------RECKLTKLSMGMTRDFELAIASGATSVRIGS 212
+ P +P F L ++ E +L LSMGM+ DF +AI GAT VR+GS
Sbjct: 181 MAPIDASPAELVQIFSGLKDLKIELEAMSSEHRLPWLSMGMSGDFPIAIECGATHVRVGS 240
Query: 213 GIF 215
++
Sbjct: 241 RLY 243
>gi|15675419|ref|NP_269593.1| hypothetical protein SPy_1519 [Streptococcus pyogenes M1 GAS]
gi|71911061|ref|YP_282611.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS5005]
gi|13622607|gb|AAK34314.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|71853843|gb|AAZ51866.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS5005]
Length = 223
Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + I S A R DSVS++AV+K VDS + G AEN++ +
Sbjct: 1 MDLLTNKKKIFETIRLSTEAANRTNDSVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L K V+ IG+LQ KV E+++ D + + A ++ +
Sbjct: 61 FLEKYDAL-KYMPVKWHLIGTLQRRKVKEVINYVDYFHALDSVRLALEINKRA---DHPV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K G ++ + + + ++ + GLM + PA + + F
Sbjct: 117 KCFLQVNISKEESKHGFNISEIDEAIGEIGKMEKIQLVGLMTMAPANASKESIITIFRQA 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ + +L T+LSMGM+ D+ +AI G+T +RIG F
Sbjct: 177 NQLRKNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFF 222
>gi|50914615|ref|YP_060587.1| pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS10394]
gi|50903689|gb|AAT87404.1| Pyridoxal-5'-phosphate family protein [Streptococcus pyogenes
MGAS10394]
Length = 223
Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + I S A R D VS++AV+K VDS + G AEN++ +
Sbjct: 1 MDLLTNKKKIFETIRLSTEAANRTNDGVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L K V+ IG+LQ KV E+++ D + + A ++ +
Sbjct: 61 FLEKYDAL-KYMPVKWHLIGTLQRRKVKEVINYVDYFHALDSVRLALEINKRA---DHPV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K G ++ + + + ++ + GLM + PA + + F
Sbjct: 117 KCFLQVNISKEESKHGFNISEIDEAIEEIGKMEKIQLVGLMTMAPANASKESIITIFRQA 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ + +L T+LSMGM+ D+ +AI G+T +RIG F
Sbjct: 177 NQLRKNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFF 222
>gi|15901500|ref|NP_346104.1| ylmE protein [Streptococcus pneumoniae TIGR4]
gi|111658555|ref|ZP_01409218.1| hypothetical protein SpneT_02000311 [Streptococcus pneumoniae
TIGR4]
gi|148993763|ref|ZP_01823190.1| ylmE protein [Streptococcus pneumoniae SP9-BS68]
gi|148997716|ref|ZP_01825280.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
gi|149001949|ref|ZP_01826903.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
gi|168483465|ref|ZP_02708417.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC1873-00]
gi|168486966|ref|ZP_02711474.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC1087-00]
gi|168488621|ref|ZP_02712820.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
SP195]
gi|168493566|ref|ZP_02717709.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC3059-06]
gi|194397968|ref|YP_002038279.1| YlmE protein [Streptococcus pneumoniae G54]
gi|221232402|ref|YP_002511555.1| hypothetical protein SPN23F_16660 [Streptococcus pneumoniae ATCC
700669]
gi|225855095|ref|YP_002736607.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
JJA]
gi|237650671|ref|ZP_04524923.1| pyridoxal phosphate enzyme, YggS family protein [Streptococcus
pneumoniae CCRI 1974]
gi|298230130|ref|ZP_06963811.1| pyridoxal phosphate enzyme, YggS family protein [Streptococcus
pneumoniae str. Canada MDR_19F]
gi|298254431|ref|ZP_06978017.1| pyridoxal phosphate enzyme, YggS family protein [Streptococcus
pneumoniae str. Canada MDR_19A]
gi|298503409|ref|YP_003725349.1| alanine racemase [Streptococcus pneumoniae TCH8431/19A]
gi|307068290|ref|YP_003877256.1| hypothetical protein SPAP_1670 [Streptococcus pneumoniae AP200]
gi|4009471|gb|AAC95441.1| YlmE [Streptococcus pneumoniae G54]
gi|14973156|gb|AAK75744.1| ylmE protein [Streptococcus pneumoniae TIGR4]
gi|147756215|gb|EDK63257.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP11-BS70]
gi|147759758|gb|EDK66748.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae SP14-BS69]
gi|147927719|gb|EDK78743.1| ylmE protein [Streptococcus pneumoniae SP9-BS68]
gi|172043110|gb|EDT51156.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC1873-00]
gi|183570133|gb|EDT90661.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC1087-00]
gi|183572682|gb|EDT93210.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
SP195]
gi|183576347|gb|EDT96875.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
CDC3059-06]
gi|194357635|gb|ACF56083.1| YlmE protein [Streptococcus pneumoniae G54]
gi|220674863|emb|CAR69438.1| conserved hypothetical protein [Streptococcus pneumoniae ATCC
700669]
gi|225722717|gb|ACO18570.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
JJA]
gi|298239004|gb|ADI70135.1| alanine racemase [Streptococcus pneumoniae TCH8431/19A]
gi|306409827|gb|ADM85254.1| Predicted enzyme with a TIM-barrel fold [Streptococcus pneumoniae
AP200]
gi|332072494|gb|EGI82977.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae GA17570]
gi|332074000|gb|EGI84478.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae GA41301]
gi|332199694|gb|EGJ13769.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae GA41317]
gi|332200224|gb|EGJ14297.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae GA47368]
gi|332201091|gb|EGJ15162.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae GA47901]
Length = 223
Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ DV IG+LQ KV +++ D + K A + R +
Sbjct: 61 FLEKYEALKDR-DVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAGEIQKR---SDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K G + + + + ++ GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|72383565|ref|YP_292920.1| hypothetical protein PMN2A_1729 [Prochlorococcus marinus str.
NATL2A]
gi|72003415|gb|AAZ59217.1| Protein of unknown function UPF0001 [Prochlorococcus marinus str.
NATL2A]
Length = 213
Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 63/197 (31%), Positives = 95/197 (48%), Gaps = 3/197 (1%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V+L+AVSK IR GQ+ F E++LQEA K I L ++ F+G+LQ
Sbjct: 17 PLGVNLLAVSKGHKHDSIRKLSGYGQLDFGESRLQEAILKKIDLSDLTQLRWHFVGTLQK 76
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV ++ FD I +V +S ++ + +++QV + K G + +
Sbjct: 77 NKVRRVIKEFDFIHSVDSLPLLERISRISQEEQKSPNIFLQVKFIEDPNKGGFLKEELLK 136
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLTKLSMGMTRDFELAI 201
+N+ GLM IPP + N K F A L SMGM+ D++ AI
Sbjct: 137 SWSNIISLKNINLIGLMTIPPIVLNAYQRKDLFCECRNFANHLGLKDCSMGMSNDWQEAI 196
Query: 202 ASGATSVRIGSGIFGER 218
GAT +R+GS +FG+R
Sbjct: 197 QGGATWIRLGSLLFGKR 213
>gi|188036273|pdb|3CPG|A Chain A, Crystal Structure Of An Unknown Protein From
Bifidobacterium Adolescentis
Length = 282
Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 64/247 (25%), Positives = 100/247 (40%), Gaps = 31/247 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + A R SV L+A +K D +I A+ G EN+ QE
Sbjct: 25 ITDGVHRVLDRIAAAEEQAGREAGSVRLLAATKTRDIGEIXAAIDAGVRXIGENRPQEVT 84
Query: 63 KKWIPLRKEW-------------------DVQLRFIGSLQSNKVSEIVSLFDVIETVSRE 103
K L + + IG LQSNK+ +++ + D IE+V
Sbjct: 85 AKAEGLARRCAERGFSLGVAGAAPDAAAEHIPFHLIGQLQSNKIGKVLPVVDTIESVDSI 144
Query: 104 KTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI 163
A +S + + + V ++VN E KSG P + ++GL I
Sbjct: 145 DLAEKISRRAVARGITVGVLLEVNESGEESKSGCDPAHAIRIAQKIGTLDGIELQGLXTI 204
Query: 164 PPAMGNP---KPHFYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVRIG 211
+ + + F L + + +LS G T D ELAIA G+T VR+G
Sbjct: 205 GAHVHDETVIRRGFSHLRKTRDLILASGEPGTDRCRELSXGXTGDXELAIAEGSTIVRVG 264
Query: 212 SGIFGER 218
+ IFGER
Sbjct: 265 TAIFGER 271
>gi|327298199|ref|XP_003233793.1| alanine racemase [Trichophyton rubrum CBS 118892]
gi|326463971|gb|EGD89424.1| alanine racemase [Trichophyton rubrum CBS 118892]
Length = 301
Score = 213 bits (544), Expect = 1e-53, Method: Composition-based stats.
Identities = 82/283 (28%), Positives = 114/283 (40%), Gaps = 68/283 (24%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDS---------------------------VSLVAVSK 35
L L ++I ++ R S V LVAVSK
Sbjct: 18 LIANLSSVSKRIAAASN--GRNNHSETSPSSSAGPVAATSTSDSNNSSAAPPVRLVAVSK 75
Query: 36 MVDSKKIRVALS--CGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL 93
+ + I S + F EN +QE +K L +++ FIG LQSNK +
Sbjct: 76 LKPASDILALHSPPTSHLHFGENYMQELLEKSKALP--PEIRWHFIGGLQSNKCVTLARE 133
Query: 94 F---DVIETVSREKTASLLSLEMIKQ--------------SRFLPVYIQVNTGYEIQKSG 136
+E+V EK ASLL ++ R L V++QVNT E KSG
Sbjct: 134 VRGLWAVESVDTEKKASLLDKGWGERAEFKQKENDANGPSDRRLRVFVQVNTSGEENKSG 193
Query: 137 IMPNQ-TKDFVILCRQ-KYQLNVEGLMCIPPAM-------GNPKPHFYLLSEIAR----E 183
I P + T + R+ +L ++GLM I N F L + +
Sbjct: 194 IQPGEPTLELCRFIREKCPRLKLQGLMTIGAIARSKATTPENENEDFACLRDTRDMVVEK 253
Query: 184 CKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L +LSMGM+ DFE AIA G+ VR+GS IFG RP +
Sbjct: 254 LSLKGEDTLELSMGMSNDFEGAIAMGSNQVRVGSTIFGARPPK 296
>gi|260578081|ref|ZP_05846003.1| alanine racemase, N- domain protein [Corynebacterium jeikeium ATCC
43734]
gi|258603821|gb|EEW17076.1| alanine racemase, N- domain protein [Corynebacterium jeikeium ATCC
43734]
Length = 251
Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats.
Identities = 51/229 (22%), Positives = 93/229 (40%), Gaps = 20/229 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L +++I + L+ ++K ++ +++ G EN+ QEA+
Sbjct: 31 IADNLARVRRRIAVA--------GGADLLPITKFHPAEDVKLLAQLGVTAVGENREQEAR 82
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL------EMIKQ 116
K L ++ +G +Q+ K + + + TV K + L E +
Sbjct: 83 DKHAQLADA-GLRFHMVGQVQTKKANSVARWAAAVHTVDSLKLLNALDRGAALALERGDR 141
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
LPV +Q + + Q+ G + + L + GLM +PP +P F
Sbjct: 142 HERLPVLLQFSADGDPQRGGAVEADIDELADAVAAAENLELRGLMTVPPLDADPAVVFAR 201
Query: 177 LSEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
++ S GM+ D E+AIA G+T VR+G+ I G RP
Sbjct: 202 GRKLVERIADRAIGAPVYSAGMSGDLEIAIAEGSTLVRVGTDIMGARPV 250
>gi|149021241|ref|ZP_01835487.1| ylmE protein [Streptococcus pneumoniae SP23-BS72]
gi|225861493|ref|YP_002743002.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
Taiwan19F-14]
gi|307127875|ref|YP_003879906.1| hypothetical protein SP670_1752 [Streptococcus pneumoniae 670-6B]
gi|147930342|gb|EDK81326.1| ylmE protein [Streptococcus pneumoniae SP23-BS72]
gi|225726653|gb|ACO22504.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
Taiwan19F-14]
gi|306484937|gb|ADM91806.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B]
gi|327389851|gb|EGE88196.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae GA04375]
gi|332072833|gb|EGI83314.1| isoleucyl-tRNA synthetase [Streptococcus pneumoniae GA17545]
Length = 223
Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ DV IG+LQ KV +I+ D + K A + R +
Sbjct: 61 FLEKYEALKDR-DVTWHLIGTLQRRKVKDIIQYVDYFHALDSVKLAGEIQKR---SDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K G + + + + ++ GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|125624831|ref|YP_001033314.1| hypothetical protein llmg_2059 [Lactococcus lactis subsp. cremoris
MG1363]
gi|4138105|emb|CAA75617.1| hypothetical protein [Lactococcus lactis subsp. cremoris MG1363]
gi|124493639|emb|CAL98626.1| Hypothetical UPF0001 protein PM0112 [Lactococcus lactis subsp.
cremoris MG1363]
gi|300071629|gb|ADJ61029.1| hypothetical protein LLNZ_10600 [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 225
Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ ++ + + SVS+VAV+K V++ R G AEN+ +
Sbjct: 1 MTIKENVKRILNNVDAAKAASSYSNQSVSVVAVTKSVEANLAREVFENGISHLAENRTEL 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ ++ IG+LQ KV ++++ D + K A +S +
Sbjct: 61 FLEKYEALKDC-EITWHLIGNLQRRKVKKVINYVDYFHALDSLKLAQEISKRAE---HLI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLL 177
+I+VN E K G ++ K+ + + + + GLM + P F +
Sbjct: 117 KCFIEVNISGEESKHGFSVDELKETLADFSELENIEIVGLMTMAPFDATESECNDIFGRM 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ E +LSMGM+RD+E+AI +GAT VRIG+ F
Sbjct: 177 KELQVEISEMNLPKIPCIELSMGMSRDYEIAIKNGATFVRIGTEFF 222
>gi|21903490|sp|O24748|Y2153_CORGL RecName: Full=UPF0001 protein Cgl2153/cg2364
gi|21324923|dbj|BAB99546.1| Predicted enzyme with a TIM-barrel fold [Corynebacterium glutamicum
ATCC 13032]
Length = 221
Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 15/221 (6%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+ +I+ + RP+ SV L+ V+K + I++ G EN+ QEA+ K + L
Sbjct: 2 QARIDATLNEHNRPEGSVRLLPVTKFHPVEDIKILQEFGVTAVGENREQEARAKALELP- 60
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL----SLEMIKQSRF---LPVY 123
D+ IG +QS K + I + +V EK A L +L + + R LP +
Sbjct: 61 --DMDFHMIGQIQSKKANSIARWAAAVHSVDSEKIAEALGRGVALALDRGDRTSDELPCF 118
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR- 182
IQ++ + + G +Q L EGLMC+PP P+ F ++
Sbjct: 119 IQLSLDGDPSRGGTPLSQVTQLADCISDTTHLRFEGLMCVPPLGWGPEKAFSQARDVLSG 178
Query: 183 -ECKLT---KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E + S GM+ D AI G+T VR+G+ I G RP
Sbjct: 179 LEEHFDRSLEFSAGMSGDLVAAIKHGSTIVRVGTEILGNRP 219
>gi|52549126|gb|AAU82975.1| predicted enzyme with a TIM-barrel fold [uncultured archaeon
GZfos24D9]
Length = 224
Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 65/205 (31%), Positives = 103/205 (50%), Gaps = 13/205 (6%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V L A +K +++ A+ G I EN +QEA++ + + + V+ FIG LQ
Sbjct: 19 PKEVVLEAAAKTRTTEETLAAIEAGITIVGENYIQEAERAFEVIGRV--VKWHFIGHLQR 76
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV + V LFD+IET+ A ++ K + +P+ I++N+G E QK G+ P +
Sbjct: 77 NKVKKAVELFDLIETIDSFSIAEEVNSVSSKIGKIMPILIEINSGREPQKFGVFPEDVAE 136
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECK--------LTKLSMGM 193
V+ + + GLM + P + + +F EI K + LSMGM
Sbjct: 137 LVVKISALASVKIVGLMTMGPYEEDIEKSRLYFRAAKEIFERIKKSGIPSVDMRYLSMGM 196
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ + +AI GA VR+G+GIFG R
Sbjct: 197 SDSYNIAIEEGANIVRVGTGIFGPR 221
>gi|157737116|ref|YP_001489799.1| hypothetical protein Abu_0870 [Arcobacter butzleri RM4018]
gi|157698970|gb|ABV67130.1| conserved hypothetical protein [Arcobacter butzleri RM4018]
Length = 226
Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 10/220 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L K+E + + V ++ +SK ++ I+ GQ F ENK+Q+ K+K
Sbjct: 9 NLDNLITKVEGARLKIS-EHHIVKVIGISKYSTTQDIKTLYEAGQRAFGENKVQDLKQKS 67
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
L E ++ F+G+LQ NK++ ++ L +I ++ A L+ ++ +++ L +
Sbjct: 68 EEL-DELPIEWHFVGTLQKNKINNLIDLNPTLIHSLDSLDLAQELNKKLEAKNKKLSCLL 126
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEI 180
Q+N+ E KSG+ + ++G+MCI + K F + I
Sbjct: 127 QINSANEDTKSGVEAKDAVKIYKEILETCPNIILKGVMCIGANSTDIKLIKESFKITKNI 186
Query: 181 AREC---KLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E SMGM+ DFELAIA G+ +R+GS +F E
Sbjct: 187 FDELVPFGAKYCSMGMSSDFELAIACGSNMIRVGSTLFKE 226
>gi|218283235|ref|ZP_03489296.1| hypothetical protein EUBIFOR_01884 [Eubacterium biforme DSM 3989]
gi|218215990|gb|EEC89528.1| hypothetical protein EUBIFOR_01884 [Eubacterium biforme DSM 3989]
Length = 205
Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 13/194 (6%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
+VAVSK ++I G F EN++QE K+ P IG LQ+NKV
Sbjct: 16 VVAVSKTRTKEEIDEVAKMGLTTFGENRVQEFIDKYDP-----KYTWHIIGHLQTNKVKY 70
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
IV DVIE++ K A + + K V +++ + K+G K+F+
Sbjct: 71 IVGKVDVIESLDSLKLAEEIEKQANKHGIIQKVLVELKISEDPNKTGYPFKDAKNFISQL 130
Query: 150 RQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-----LTKLSMGMTRDFELAI 201
++ + ++G+MC+ N + F + + E K + LSMGM++D++LA+
Sbjct: 131 QEFKHIQIKGIMCVASKTDNQELVESEFEQMHTLYLELKEQYSEIDTLSMGMSQDYKLAV 190
Query: 202 ASGATSVRIGSGIF 215
G+ +VRIG IF
Sbjct: 191 KHGSNTVRIGRAIF 204
>gi|307331670|ref|ZP_07610777.1| alanine racemase domain protein [Streptomyces violaceusniger Tu
4113]
gi|306882696|gb|EFN13775.1| alanine racemase domain protein [Streptomyces violaceusniger Tu
4113]
Length = 239
Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L ++I + A R ++ V+L+ V+K + +R+ G AEN+ QEA
Sbjct: 8 LAANLGRVTERISAACAEAGRKREEVTLIVVTKTYPASDVRLLAELGVRHVAENRDQEAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + F+G LQ+NKV + S DV+++V R++ LS + +R + V
Sbjct: 68 PKAAECADLPLI-WHFVGQLQTNKVRSVSSYADVVQSVDRKRLVDALSRAAVGAAREMGV 126
Query: 123 YIQVNTGYEIQK----SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM----GNPKPHF 174
IQV + + G+ P + + L ++GLM + P G P+ F
Sbjct: 127 LIQVALDADSDERGARGGVGPGGVERLAESVAEAEGLRLDGLMTVAPLTGPYEGRPRAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L EI+ ++ +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 DRLMEISSRLRVAHPAANMVSAGMSSDLEEAVAAGATHVRVGTAVLGVRP 236
>gi|163790533|ref|ZP_02184962.1| hypothetical protein CAT7_08130 [Carnobacterium sp. AT7]
gi|159874136|gb|EDP68211.1| hypothetical protein CAT7_08130 [Carnobacterium sp. AT7]
Length = 223
Score = 212 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 64/226 (28%), Positives = 109/226 (48%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ Q +Q ++ S + R + V ++AV+K V S++ A+ G + AEN+ +
Sbjct: 1 MSVKENSQKIEQLLDVSLAKSSRKRSDVQVIAVTKSVSSEQAVEAIEEGYLHLAENRPEG 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L + FIG+LQ+ KV ++++ D + R A + ++ +
Sbjct: 61 LALKQKELSDH-RLVWHFIGNLQARKVKKVINDIDYFHALDRLSLAEEIEKRA---NKVV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
++QVN E KSG+ P Q F+ Q ++ + GLM + P + + F L
Sbjct: 117 LCFVQVNVTGEETKSGVSPEQLDAFITSLSQYSKIKIVGLMTMAPLNASEMVIRSAFVHL 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ K T+LSMGM++DF +A+ GAT VRIG+ F
Sbjct: 177 RKLQESIKDKALPYAPCTELSMGMSKDFTIAVEEGATFVRIGTSFF 222
>gi|182684607|ref|YP_001836354.1| ylmE protein [Streptococcus pneumoniae CGSP14]
gi|225857281|ref|YP_002738792.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
P1031]
gi|303258594|ref|ZP_07344574.1| ylmE protein [Streptococcus pneumoniae SP-BS293]
gi|303262681|ref|ZP_07348621.1| ylmE protein [Streptococcus pneumoniae SP14-BS292]
gi|303263621|ref|ZP_07349543.1| ylmE protein [Streptococcus pneumoniae BS397]
gi|303266382|ref|ZP_07352271.1| ylmE protein [Streptococcus pneumoniae BS457]
gi|303268255|ref|ZP_07354053.1| ylmE protein [Streptococcus pneumoniae BS458]
gi|182629941|gb|ACB90889.1| ylmE protein [Streptococcus pneumoniae CGSP14]
gi|225725473|gb|ACO21325.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
P1031]
gi|301802367|emb|CBW35121.1| conserved hypothetical protein [Streptococcus pneumoniae INV200]
gi|302636237|gb|EFL66732.1| ylmE protein [Streptococcus pneumoniae SP14-BS292]
gi|302640095|gb|EFL70550.1| ylmE protein [Streptococcus pneumoniae SP-BS293]
gi|302642206|gb|EFL72555.1| ylmE protein [Streptococcus pneumoniae BS458]
gi|302644082|gb|EFL74340.1| ylmE protein [Streptococcus pneumoniae BS457]
gi|302646659|gb|EFL76884.1| ylmE protein [Streptococcus pneumoniae BS397]
Length = 223
Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVGEASLSAHRESSSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ DV IG+LQ KV +++ D + K A + R +
Sbjct: 61 FLEKYEALKDR-DVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAGEIQKR---SDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K G + + + + ++ GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAT 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|56808759|ref|ZP_00366476.1| COG0325: Predicted enzyme with a TIM-barrel fold [Streptococcus
pyogenes M49 591]
Length = 223
Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats.
Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L + + I S A R DSVS++AV+K VDS + G AEN++ +
Sbjct: 1 MDLLTNKKKIFETIRLSTEAANRTNDSVSVIAVTKYVDSTIAGQLIEAGIEHIAENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L K V+ IG+LQ KV E+++ D + + A ++ +
Sbjct: 61 FLEKYDAL-KYMPVKWHLIGTLQRRKVKEVINYVDYFHALDSVRLALEINKRA---DHPV 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K G ++ + + + ++ + GLM + PA + + F
Sbjct: 117 KCFLQVNISKEESKHGFNISEIDEAIEEMGKMEKIQLVGLMTMAPANASKESIITIFRQA 176
Query: 178 SEIARECKL--------TKLSMGMTRDFELAIASGATSVRIGSGIF 215
+++ + +L T+LSMGM+ D+ +AI G+T +RIG F
Sbjct: 177 NQLRKNLQLKKRKNMPFTELSMGMSNDYPIAIQEGSTFIRIGRAFF 222
>gi|302496453|ref|XP_003010228.1| hypothetical protein ARB_03580 [Arthroderma benhamiae CBS 112371]
gi|291173769|gb|EFE29588.1| hypothetical protein ARB_03580 [Arthroderma benhamiae CBS 112371]
Length = 301
Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats.
Identities = 81/282 (28%), Positives = 115/282 (40%), Gaps = 66/282 (23%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDS--------------------------VSLVAVSKM 36
L L ++I +A ++ + V LVAVSK+
Sbjct: 18 LIANLSSVSKRIA-AASNSRNNHNETSPSPSAGPVAVTSTSDSSNNSAAPPVRLVAVSKL 76
Query: 37 VDSKKIRVALS--CGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF 94
+ I S + F EN +QE +K L +++ FIG LQSNK +
Sbjct: 77 KPASDILALHSPPTSHLHFGENYMQELLEKSKALP--PEIRWHFIGGLQSNKCVTLAREV 134
Query: 95 ---DVIETVSREKTASLLSLEMIKQ--------------SRFLPVYIQVNTGYEIQKSGI 137
+E+V EK ASLL ++ R L V++QVNT E KSGI
Sbjct: 135 RGLWAVESVDTEKKASLLDKGWGERAEFKQKENGANEPPDRRLRVFVQVNTSGEENKSGI 194
Query: 138 MPNQ-TKDFVILCRQ-KYQLNVEGLMCIPPAM-------GNPKPHFYLLSEIAR----EC 184
P + T + R+ +L ++GLM I N F L + +
Sbjct: 195 QPGEPTLELCRFIREKCPRLKLQGLMTIGAIARSKATTPENENEDFACLRDTRDMVVEKL 254
Query: 185 KLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
L +LSMGM+ DFE AIA G+ VR+GS IFG RP +
Sbjct: 255 SLKGEDTLELSMGMSNDFEGAIAMGSNQVRVGSTIFGARPPK 296
>gi|257463045|ref|ZP_05627447.1| proline synthetase associated protein [Fusobacterium sp. D12]
gi|317060649|ref|ZP_07925134.1| proline synthetase associated protein [Fusobacterium sp. D12]
gi|313686325|gb|EFS23160.1| proline synthetase associated protein [Fusobacterium sp. D12]
Length = 226
Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats.
Identities = 60/226 (26%), Positives = 112/226 (49%), Gaps = 17/226 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +++ +++ + + V ++AVSK ++++++ L G V EN+ Q +
Sbjct: 4 IEERMKEVYEEVRQYSPY----PEKVKVIAVSKYLNAEEMLPYLETGIVTLGENRAQVIQ 59
Query: 63 KKWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K+ L ++ FIG+LQ NKV IV +I +V++ A ++ +M +R
Sbjct: 60 EKYELLSSYPFAKSLEWHFIGNLQKNKVKYIVDKVAMIHSVNKLSLAEEINKKMGSLNRK 119
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYL 176
+PV I+VN E K G + + + + + + GLM + P + + F
Sbjct: 120 MPVLIEVNVSGEESKEGYDVLEAEQDIPALLKLENIRICGLMTMAPFTEDAEEQRKVFRK 179
Query: 177 LSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L + E KLT+LSMGM+ D+++A+ GAT +R+G IF
Sbjct: 180 LRILKEEWNKKYFQDKLTELSMGMSNDYKIALQEGATMIRLGRKIF 225
>gi|207093275|ref|ZP_03241062.1| hypothetical protein HpylHP_10976 [Helicobacter pylori
HPKX_438_AG0C1]
Length = 212
Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats.
Identities = 72/212 (33%), Positives = 110/212 (51%), Gaps = 8/212 (3%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K K L +
Sbjct: 3 AKIEKARIAYSR-HHIVKIVAVSKNASLEAIQHYYNCSQRAFGENKVQDLKTKMHSL-EH 60
Query: 72 WDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
++ IGSLQ NK++ ++SL ++ ++ K A + L +QVN+ Y
Sbjct: 61 LPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNALLQVNSAY 120
Query: 131 EIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK- 185
E KSG++P +T + + +L ++GLMCI + + F ++ + K
Sbjct: 121 EESKSGVVPEETLETYSQISETCKRLKLKGLMCIGAHTDDEKEIEKSFITTKKLFDQIKN 180
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 181 ASVLSMGMSCDFELAIACGANLLRIGSFLFKE 212
>gi|50287463|ref|XP_446161.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525468|emb|CAG59085.1| unnamed protein product [Candida glabrata]
Length = 265
Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats.
Identities = 69/214 (32%), Positives = 102/214 (47%), Gaps = 20/214 (9%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK 86
SV L+AVSK+ + +++ G F EN +QE +K L D++ FIG LQ+NK
Sbjct: 49 SVLLLAVSKLKPASDVQILYDHGVRDFGENYVQELIEKAELLP--TDIRWHFIGGLQTNK 106
Query: 87 VSEIVSLFDV--IETVSREKTASLLSLEMIK---QSRFLPVYIQVNTGYEIQKSG-IMPN 140
++ + ++ +ETV K A L+ K + + IQ+NT E QKSG + +
Sbjct: 107 CKDLAKVPNLFSVETVDSLKKAKKLNEARGKYQPDANAISCNIQINTSQEDQKSGLVDED 166
Query: 141 QTKDFVI--LCRQKYQLNVEGLMCIPP-----AMGNPKPHFYLLSEIARECKLT-----K 188
+ + V L + + GLM I G F L E + K
Sbjct: 167 EVYEIVKFFLSEDAKFVKLNGLMTIGSWEVSHEEGEENKDFSKLVEWKSKIDSKFGTDLK 226
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
LSMGM+ DF+ AI G + VRIG+ IFG RP +
Sbjct: 227 LSMGMSADFKQAIRQGTSEVRIGTDIFGTRPPKN 260
>gi|315636798|ref|ZP_07892024.1| TIM-barrel fold protein [Arcobacter butzleri JV22]
gi|315478924|gb|EFU69631.1| TIM-barrel fold protein [Arcobacter butzleri JV22]
Length = 226
Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats.
Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 10/220 (4%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L K+E + + V ++ +SK ++ I+ GQ F ENK+Q+ K+K
Sbjct: 9 NLDNLITKVEGARLKIS-EHHIVKIIGISKYSTTQDIKTLYEAGQRAFGENKVQDLKQKS 67
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
L E ++ F+G+LQ NK++ ++ L +I ++ A L+ ++ +++ L +
Sbjct: 68 EEL-DELPIEWHFVGTLQKNKINNLIDLNPTLIHSLDSLDLAQELNKKLEAKNKNLSCLL 126
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEI 180
Q+N+ E KSG+ + ++G+MCI + K F + +
Sbjct: 127 QINSANEDTKSGVEAKDAIKIYKEILETCPNIILKGVMCIGANSTDIKLIKESFKITKNV 186
Query: 181 AREC---KLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E SMGM+ DFELAIA G+ +R+GS +F E
Sbjct: 187 FDELVPFGAKYCSMGMSSDFELAIACGSNMIRVGSTLFKE 226
>gi|116783162|gb|ABK22817.1| unknown [Picea sitchensis]
Length = 218
Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats.
Identities = 54/181 (29%), Positives = 82/181 (45%), Gaps = 7/181 (3%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L+ ++++ +A + R V +VAVSK IR G F EN +QE K
Sbjct: 8 ALRTVLRRVQQAAEKSGRQASQVRVVAVSKTKPVSLIREVYEAGHRYFGENYVQEILDKA 67
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FLP 121
L D+Q FIG LQSNK + V ++E+V K A+ L + R L
Sbjct: 68 PELP--TDIQWHFIGHLQSNKAKAVIAGVPNLYMVESVDSSKVANHLDRAVSSIGRKPLK 125
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +QVNT E K G+ P++ + + Q L GLM I + +P + ++E+
Sbjct: 126 VLVQVNTSGEESKYGVEPSECVELAKHVKFQCPNLEFSGLMTIGMLDYSSRPENFEVAEL 185
Query: 181 A 181
Sbjct: 186 K 186
>gi|330918264|ref|XP_003298159.1| hypothetical protein PTT_08769 [Pyrenophora teres f. teres 0-1]
gi|311328814|gb|EFQ93739.1| hypothetical protein PTT_08769 [Pyrenophora teres f. teres 0-1]
Length = 269
Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats.
Identities = 71/247 (28%), Positives = 99/247 (40%), Gaps = 34/247 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCG---QVIFAENKLQ 59
L + +I+ + V L+AVSK+ + I F EN +Q
Sbjct: 15 LAENIATISSRIKA----VSKDGKQVRLIAVSKLKPANDILALHQKPDPIHTHFGENYVQ 70
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV---SLFDVIETVSREKTASLLSL----- 111
E +K L + ++ IG LQSNK ++ + +V EK A+ L
Sbjct: 71 ELIEKSKLLPRT--IRWHMIGGLQSNKCKQLAEQIPNLWCVSSVDSEKKANELEKGRKAL 128
Query: 112 -EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAM-- 167
E L V +QVNT E +KSG+ P+ + L + GLM I
Sbjct: 129 SEKDNSEEKLRVKVQVNTSGEKEKSGVEPSDAITLCRHIIEKCPHLQLSGLMTIGAIARS 188
Query: 168 -----GNPKPHFYLLSEIAR--------ECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
N F L E E +LSMGM+ DFE AI G+ VR+GS I
Sbjct: 189 KATTPENENEDFVALRETRDKVTKELGWEEGQLELSMGMSADFEGAIRMGSDEVRVGSEI 248
Query: 215 FGERPCQ 221
FGERP +
Sbjct: 249 FGERPQK 255
>gi|291455932|ref|ZP_06595322.1| pyridoxal phosphate enzyme, YggS family [Bifidobacterium breve DSM
20213]
gi|291382341|gb|EFE89859.1| pyridoxal phosphate enzyme, YggS family [Bifidobacterium breve DSM
20213]
Length = 295
Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats.
Identities = 64/270 (23%), Positives = 103/270 (38%), Gaps = 54/270 (20%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +I + +A R SV L+A +K D +I A+S G + EN+ QE
Sbjct: 23 ITDGVHRVLDRIAAAESMAGREAGSVQLLAATKTRDVGEIMAAISAGIHLIGENRPQEVT 82
Query: 63 KKWIPL------------------------------------------RKEWDVQLRFIG 80
K L + IG
Sbjct: 83 VKAPGLTRLLSERGMSLGVIGGAGAFNGAAASGAANGVGDSDSTGASANAANHISFHLIG 142
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
LQ+NK+ +++ + + IE+V + A ++ + + V ++VN E KSG P+
Sbjct: 143 QLQANKIGKVLPVVNTIESVDSIELAEKIARRATMRGITVGVLLEVNESGEESKSGCAPS 202
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIAREC---------KLTK 188
D L ++GLM I + + + F L + +
Sbjct: 203 HAIDLAQRIGAMGGLELQGLMTIGAHVDDERAIRAGFAHLRRTRDQILASGAEGTASCKE 262
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGMT D AI G+T VR+G+ IFGER
Sbjct: 263 LSMGMTHDMAYAIEEGSTIVRVGTAIFGER 292
>gi|327539691|gb|EGF26298.1| pyridoxal phosphate-dependent enzyme, YBL036C type [Rhodopirellula
baltica WH47]
Length = 253
Score = 211 bits (539), Expect = 4e-53, Method: Composition-based stats.
Identities = 63/227 (27%), Positives = 110/227 (48%), Gaps = 15/227 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + K + +A R DSV +V V+K VD++ + G EN+ Q +
Sbjct: 21 IVDNWNSVKSAVSETAQRCGRSPDSVRVVGVTKYVDAEITSWLVEAGCHDLGENRPQLLE 80
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L + +++ IG+LQ NKV ++ ++ ++ E+ + L E + QSR +
Sbjct: 81 SKFQTL-DDSNIRWHQIGNLQRNKVRRLLPAEPLVHAIASERLLNALHNECLLQSRSIDG 139
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQK-----YQLNVEGLMCIPPAMGNP---KPHF 174
I++N E K+G+ +Q + ++ R+ LN+ GLM + + F
Sbjct: 140 LIEINVSEEAAKTGLPIDQLEPLLVHWRELAGSSNAGLNITGLMAMAGWGTDETAAARQF 199
Query: 175 YLLSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L E+ + + L +LSMGM+ D+ AIA GAT VRIG+ +F
Sbjct: 200 AKLRELRDQMESPTGISLPELSMGMSGDYPAAIAEGATLVRIGTRLF 246
>gi|86740126|ref|YP_480526.1| hypothetical protein Francci3_1420 [Frankia sp. CcI3]
gi|86566988|gb|ABD10797.1| Protein of unknown function UPF0001 [Frankia sp. CcI3]
Length = 346
Score = 211 bits (538), Expect = 5e-53, Method: Composition-based stats.
Identities = 72/258 (27%), Positives = 112/258 (43%), Gaps = 41/258 (15%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L + +I +A A R D ++L+AVSK + + + + G FAEN+ QEA
Sbjct: 86 LTQRLAEVRARIAGAARAAGRDPDHLTLIAVSKTYPPQDVVMMHTLGVRHFAENREQEAG 145
Query: 63 KKWIPLRK-----------------------EWDVQLRFIGSLQSNKVSEIVSLFDVIET 99
K + + D F+G LQ NK ++ D +++
Sbjct: 146 PKVSLVTRLIGGERSVPAKGTGDGLSSGATGSDDPIWHFVGQLQRNKARSVLRWADWVQS 205
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ-------------KSGIMPNQTKDFV 146
V R +LS +++ R L + +QV+ + GI P
Sbjct: 206 VDRVSLVPVLSRLAMERGRPLSICLQVSLDLPGASDGKIGASIAGSRRGGIDPAGLSALA 265
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK-----LTKLSMGMTRDFELAI 201
L + L + G+M + P G P+P F L E+A K T +S GM+ D E A+
Sbjct: 266 DLVEEAPGLALRGVMAVAPRRGQPRPAFARLREVAERLKVGHPQATVISAGMSGDLEDAV 325
Query: 202 ASGATSVRIGSGIFGERP 219
A GAT +RIG+ +FGERP
Sbjct: 326 AEGATHLRIGTALFGERP 343
>gi|302667847|ref|XP_003025502.1| hypothetical protein TRV_00264 [Trichophyton verrucosum HKI 0517]
gi|291189616|gb|EFE44891.1| hypothetical protein TRV_00264 [Trichophyton verrucosum HKI 0517]
Length = 303
Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats.
Identities = 81/284 (28%), Positives = 114/284 (40%), Gaps = 68/284 (23%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDS----------------------------VSLVAVS 34
L L ++I +A ++ + V LVAVS
Sbjct: 18 LIANLSAVSKRIA-AASNSRNNHNETSPSPSAGPVAATSTSDSNNNNSSAAPPVRLVAVS 76
Query: 35 KMVDSKKIRVALS--CGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS 92
K+ I S + F EN +QE +K L +++ FIG LQSNK +
Sbjct: 77 KLKPVSDILALHSPPTSHLHFGENYMQELLEKSKALP--PEIRWHFIGGLQSNKCVTLAR 134
Query: 93 LF---DVIETVSREKTASLLSLEMIKQ--------------SRFLPVYIQVNTGYEIQKS 135
+E+V EK ASLL ++ R L V++QVNT E KS
Sbjct: 135 EVRGLWAVESVDTEKKASLLDKGWGERAEFKQKENDANQPLDRRLRVFVQVNTSGEENKS 194
Query: 136 GIMPNQ-TKDFVILCRQ-KYQLNVEGLMCIPPAM-------GNPKPHFYLLSEIAR---- 182
GI P + T + R+ +L ++GLM I N F L +
Sbjct: 195 GIQPGEPTLELCRFIRENCPRLKLQGLMTIGAIARSKATTPENENEDFACLRDTRDMVVE 254
Query: 183 ECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ L +LSMGM+ DFE AIA G+ VR+GS IFG RP +
Sbjct: 255 KLSLKGEETLELSMGMSNDFEGAIAMGSNQVRVGSTIFGARPPK 298
>gi|32477788|ref|NP_870782.1| enzyme with TIM-barrel fold [Rhodopirellula baltica SH 1]
gi|32448342|emb|CAD77859.1| conserved hypothetical protein-putative enzyme with TIM-barrel fold
[Rhodopirellula baltica SH 1]
Length = 253
Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats.
Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 15/227 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +A R DSV +V V+K VD++ + G EN+ Q +
Sbjct: 21 IVDNWNSVNSSVSETAQRCGRSPDSVRVVGVTKYVDAEITSWLVEAGCHDLGENRPQLLE 80
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K+ L + +++ IG+LQ NKV ++ ++ ++ E+ L E + QSR +
Sbjct: 81 SKFQTL-DDSNIRWHQIGNLQRNKVRRLLPAEPLVHAIASERLLDALHNECLLQSRSIDG 139
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQK-----YQLNVEGLMCIPPAMGNP---KPHF 174
I++N E K+G+ +Q + ++ R+ LN+ GLM + + F
Sbjct: 140 LIEINVSEEEAKTGLPIDQLEPLLVHWRELAGSSNAGLNINGLMAMAGWGTDETAAARQF 199
Query: 175 YLLSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L E+ + + L +LSMGM+ D+ AIA GAT VRIG+ +F
Sbjct: 200 AKLRELRDQMESSTGISLPELSMGMSGDYPAAIAEGATLVRIGTRLF 246
>gi|313622997|gb|EFR93291.1| protein YlmE [Listeria innocua FSL J1-023]
Length = 199
Score = 211 bits (538), Expect = 6e-53, Method: Composition-based stats.
Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 15/195 (7%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
VAV+K +D I G F EN+ K L + D+ +IGSLQ+ KV ++
Sbjct: 1 VAVTKTIDVAGITELYDLGIRHFGENRADVFLDKTRELADKDDICWHYIGSLQTRKVKDV 60
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
+ D + ++ R A + K + ++QVN E K G + F+
Sbjct: 61 LPEIDYLHSLDRSSLAKEIEKRATK---PIKCFLQVNISGEESKHGFSKEEALSFLQE-A 116
Query: 151 QKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIARECKL--------TKLSMGMTRDFEL 199
+ + GLM + P + K F+ L ++ +E T+LSMGMT D+ +
Sbjct: 117 DFNFIEIVGLMTMAPITNSDKELHHVFHELKQLQQEIHALQLKNIPCTELSMGMTNDYGI 176
Query: 200 AIASGATSVRIGSGI 214
AI GAT +R+G +
Sbjct: 177 AITEGATFIRVGRAL 191
>gi|57234460|ref|YP_181491.1| hypothetical protein DET0758 [Dehalococcoides ethenogenes 195]
gi|57224908|gb|AAW39965.1| conserved hypothetical protein TIGR00044 [Dehalococcoides
ethenogenes 195]
Length = 220
Score = 211 bits (538), Expect = 7e-53, Method: Composition-based stats.
Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 16/224 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ + I + ILA+ P D V+L A K +I A+ G I N L EA++ +
Sbjct: 2 YEDITRNIRD--ILAELPPD-VTLEAAVKKRQPAEILAAIEAGVKIIGHNYLSEAEQTYP 58
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ ++ V+ FIG LQSNK +IV LF V+ETV + AS L+ + + L V+I++
Sbjct: 59 LIGEK--VEWHFIGKLQSNKCKKIVRLFSVVETVDSFEIASELNRRAAEIDKVLSVFIEI 116
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE 183
N+G E QKSG++P T + L + GLM + PA+ +P + F L E
Sbjct: 117 NSGREEQKSGVLPEDTVELAKRLSGLSNLRLSGLMTMGPALEDPDELRSVFRLTKNKFDE 176
Query: 184 C--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+L LSMGM+ +++A+ G VR+G+ IFG RP
Sbjct: 177 IAAMGLPNTELKFLSMGMSGSYKVAVQEGTNLVRLGTRIFGPRP 220
>gi|255715669|ref|XP_002554116.1| KLTH0E14652p [Lachancea thermotolerans]
gi|238935498|emb|CAR23679.1| KLTH0E14652p [Lachancea thermotolerans]
Length = 255
Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats.
Identities = 70/234 (29%), Positives = 109/234 (46%), Gaps = 22/234 (9%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ K +++ R + VSL+ VSK+ + I++ G F EN +QE K
Sbjct: 22 YEAVKATVDSYVKGCGR--NDVSLLPVSKLKPASDIQLLYDHGLRSFGENYVQELISKAE 79
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIK---QSRFLP 121
L K D++ FIG LQ+NK ++ V +ET+ K A L+ K Q+ +
Sbjct: 80 ILPK--DIRWHFIGGLQTNKCKDLAKVENLYAVETIDSLKKAKKLNEARAKLHPQANKIL 137
Query: 122 VYIQVNTGYEIQKSGIMPN-QTKDFVI--LCRQKYQLNVEGLMCIPP-----AMGNPKPH 173
+Q+NT E QKSG+ + + V L + + + GLM I +
Sbjct: 138 CNVQINTSEEAQKSGLSDEKEIFEVVQFMLSDEATNIELGGLMTIGSWDVSHSETEENHD 197
Query: 174 FYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
F +L + ++ KLSMGM+ DF+ AI G + VRIG+ IFG RP +
Sbjct: 198 FAVLCQWKKKIDDKFSTDLKLSMGMSSDFKQAINQGTSQVRIGTDIFGTRPSRA 251
>gi|120404490|ref|YP_954319.1| alanine racemase domain-containing protein [Mycobacterium
vanbaalenii PYR-1]
gi|119957308|gb|ABM14313.1| alanine racemase domain protein [Mycobacterium vanbaalenii PYR-1]
Length = 275
Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats.
Identities = 54/234 (23%), Positives = 87/234 (37%), Gaps = 17/234 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + ++ +A A R + L+ V+K + + G F E++ QEA
Sbjct: 9 LSLALTALRLRVARAAEAAGRDAGDIELLPVTKFFPASDVVALHRLGCSAFGESRDQEAA 68
Query: 63 KKWIP---LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI----- 114
K L ++ +G +Q NK + +V K + L
Sbjct: 69 AKVEEVGGLVGNDPIRWHMVGRIQRNKARSVAQWAYAAHSVDSPKVIAALDRAAEEALDD 128
Query: 115 -KQSRFLPVYIQVNTGYEIQKSGIMPNQ---TKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
++ L VY+QV+ + + G+ D L GLM IPP +
Sbjct: 129 GRRPAPLRVYLQVSLDGDEARGGVDVAATDRIDDLCGAVDSARGLEFVGLMAIPPLNADA 188
Query: 171 KPHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L + LS GM+ D E A+ G+T VR+G+ + G RP
Sbjct: 189 GEAFARLERERDRVQRRFQQRLGLSAGMSGDLEEAVRHGSTCVRVGTALLGSRP 242
>gi|259047009|ref|ZP_05737410.1| cell division protein YlmE [Granulicatella adiacens ATCC 49175]
gi|259036328|gb|EEW37583.1| cell division protein YlmE [Granulicatella adiacens ATCC 49175]
Length = 227
Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats.
Identities = 54/226 (23%), Positives = 102/226 (45%), Gaps = 15/226 (6%)
Query: 1 MSL-GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS+ + + +S R V + V+K +++ G FAEN+++
Sbjct: 1 MSIIKQNVSRIMNLVASSCNQVHRLSTEVCPIVVTKNRSQDEVQEMYDLGFRHFAENRVE 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+ ++ +E D+ IG LQ KV ++++ D+ + R S + + +
Sbjct: 61 KLLERQEQFPQE-DIIWHLIGPLQKRKVKQVINHIDLFHALDRLSIMSEIDKRLEQ---P 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L +++N E K G P + +Q +++V GLM + P + + F
Sbjct: 117 LDCLLEINVSGEETKHGFSPEEAFSAYKESKQYEKIHVAGLMTMAPFEASDEEIRFFFSR 176
Query: 177 LSEIARECKLTK-------LSMGMTRDFELAIASGATSVRIGSGIF 215
L+++A++ + + LSMGM+ DF +AI GAT +RIG+ F
Sbjct: 177 LAQLAKKIEEKEKLSQPLQLSMGMSGDFPIAIQCGATYIRIGTSWF 222
>gi|157412807|ref|YP_001483673.1| TIM-barrel fold family protein [Prochlorococcus marinus str. MIT
9215]
gi|157387382|gb|ABV50087.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
str. MIT 9215]
Length = 211
Score = 211 bits (537), Expect = 7e-53, Method: Composition-based stats.
Identities = 64/217 (29%), Positives = 105/217 (48%), Gaps = 13/217 (5%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
K KI +V+++AVSK S++I+ + GQ F E+K QEA +K
Sbjct: 4 ANYLKIKNKI----------PSNVNILAVSKGFKSQEIKTIQNIGQNDFGESKFQEAYEK 53
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ L+ + FIG +QSNK+ +IV F I +V + +S ++ ++ + +
Sbjct: 54 QLILKDLKQINWHFIGRIQSNKIRKIVQNFKYIHSVDSFEKLQKISNISREEEKYPSIML 113
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIA 181
QV + K G P ++ +++ GLM I P + K + F +A
Sbjct: 114 QVKFSDDPTKGGFNPEFLILKWREIQELENISLTGLMTINPKGLSSKENSGLFKKCRTLA 173
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+L SMGM+ D+E AI +G+T +R+GS IFG R
Sbjct: 174 DTLQLPDCSMGMSSDWEEAIDAGSTWLRLGSLIFGGR 210
>gi|313679728|ref|YP_004057467.1| alanine racemase domain protein [Oceanithermus profundus DSM 14977]
gi|313152443|gb|ADR36294.1| alanine racemase domain protein [Oceanithermus profundus DSM 14977]
Length = 213
Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats.
Identities = 67/193 (34%), Positives = 99/193 (51%), Gaps = 8/193 (4%)
Query: 27 SVSLVAVSKMVDSKKI-RVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
SV LVAV+K D +I R L G EN++QEA+ K + + FIG LQ N
Sbjct: 23 SVRLVAVTKGRDLAEIERKVLRYGDFPLGENRIQEARAKIAAWPER---EWHFIGPLQRN 79
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV + F ++ +V + A L+ ++ + ++VN E QK G P++
Sbjct: 80 KVRYLRP-FRLVHSVDSLRLAEALAARAKREGYRPRILLEVNVAREPQKHGFDPDEVDAA 138
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECKLTKLSMGMTRDFELAIA 202
V RQ L + GLM + P +P+ F L+ +AR L +LSMGM+ DFE+A+
Sbjct: 139 VQAVRQLEPLELRGLMTMAPLAEDPEEVRWVFRELARMARHLGLPELSMGMSGDFEVAVE 198
Query: 203 SGATSVRIGSGIF 215
GAT VR+G +F
Sbjct: 199 EGATLVRVGRALF 211
>gi|300784861|ref|YP_003765152.1| pyridoxal-5'-phosphate dependent enzyme class III [Amycolatopsis
mediterranei U32]
gi|299794375|gb|ADJ44750.1| pyridoxal-5'-phosphate dependent enzyme class III [Amycolatopsis
mediterranei U32]
Length = 237
Score = 211 bits (537), Expect = 8e-53, Method: Composition-based stats.
Identities = 56/227 (24%), Positives = 95/227 (41%), Gaps = 13/227 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R +D V L+A++K + + + G EN+ QEA
Sbjct: 8 LAENLAEVEERIAAACRAAGRARDEVKLIAITKTFPASDVALLAELGVTDVGENRDQEAG 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM------IKQ 116
K + ++ +G LQ NK +V +++V + A L+ + K+
Sbjct: 68 PKAAEVAAR--LRWHMVGRLQRNKARSVVGWAHEVQSVDSARLADALAKAVHTERYSGKR 125
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L V IQ + + + G + Q +L + GLM + P +P F
Sbjct: 126 EEPLDVLIQASLDDDPGRGGCPLAELPALADHIAQSGELRLRGLMAVAPLGADPAAAFER 185
Query: 177 LSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+ +S GM+ D E AI G+TSVR+G+ + G R
Sbjct: 186 LARAGESLRKDHPNAADVSAGMSHDLEQAITHGSTSVRVGTALLGGR 232
>gi|322710536|gb|EFZ02110.1| alanine racemase family protein (ISS) [Metarhizium anisopliae ARSEF
23]
Length = 256
Score = 211 bits (537), Expect = 9e-53, Method: Composition-based stats.
Identities = 76/248 (30%), Positives = 104/248 (41%), Gaps = 34/248 (13%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC--GQVIFAENKLQ 59
+L ++L K++I A R V LVAVSK+ + I F EN Q
Sbjct: 10 ALISQLSSVKERIGGLAH--GRD---VRLVAVSKLKPANDILALHQAPASHRHFGENYTQ 64
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMIKQS 117
E +K L K +Q FIG LQS + + +V K A+LL+
Sbjct: 65 ELTQKAQLLPKT--IQWHFIGGLQSGHCKTLAKIPNLFCVSSVDTLKKAALLNTTRGALL 122
Query: 118 ------RFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILC-RQKYQLNVEGLMCI------ 163
L V++QVNT E KSG P +T L++ GLM I
Sbjct: 123 ASDPSLPKLSVHVQVNTSGEEAKSGCAPGEETVALCREIITNCPNLHLLGLMTIGAIARS 182
Query: 164 -PPAMGNPKPHFYLLSE----IARECKLT----KLSMGMTRDFELAIASGATSVRIGSGI 214
N F L + +AR+ L +LSMGM+ DFE A+ G+ VR+GS I
Sbjct: 183 KATTADNENDDFIALKQQRDLVARQLALDDARLELSMGMSEDFEGAVVLGSGEVRVGSTI 242
Query: 215 FGERPCQT 222
FG RP +
Sbjct: 243 FGTRPAKA 250
>gi|317011255|gb|ADU85002.1| hypothetical protein HPSA_05125 [Helicobacter pylori SouthAfrica7]
Length = 222
Score = 211 bits (537), Expect = 9e-53, Method: Composition-based stats.
Identities = 71/220 (32%), Positives = 112/220 (50%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
K+ KIE + I R V +VA+SK + I+ +C Q F ENK+Q+ K
Sbjct: 5 RQKIDSLIAKIEKARIAYSR-HHIVKIVAISKNASLESIQHYYNCSQRAFGENKVQDLKT 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ +GSLQ NK++ ++SL ++ ++ + A + L
Sbjct: 64 KMHSL-EHLPLEWHMVGSLQENKINTLLSLKPALLHSLDSLELALKIEKRCETLGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG+ P +T DF + ++ ++GLMCI + + F
Sbjct: 123 LLQVNSAYEKSKSGVKPEETLDFYSQISETCKRIQLKGLMCIGAHTDDETKIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ + K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDQLKNASILSMGMSYDFELAIACGANLLRIGSFLFKE 222
>gi|254525563|ref|ZP_05137615.1| pyridoxal phosphate enzyme, YggS family [Prochlorococcus marinus
str. MIT 9202]
gi|221536987|gb|EEE39440.1| pyridoxal phosphate enzyme, YggS family [Prochlorococcus marinus
str. MIT 9202]
Length = 210
Score = 211 bits (537), Expect = 9e-53, Method: Composition-based stats.
Identities = 64/217 (29%), Positives = 105/217 (48%), Gaps = 13/217 (5%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
K KI +V+++AVSK S++I+ + GQ F E+K QEA +K
Sbjct: 4 ANYLKIKNKI----------PSNVNILAVSKGFKSQEIKTIQNIGQNDFGESKFQEAYEK 53
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
+ L+ + FIG +QSNK+ +IV F I +V + +S ++ ++ + +
Sbjct: 54 QLILKDLKQINWHFIGRIQSNKIRKIVQNFKYIHSVDSFEKLQKISNISREEEKYPSIML 113
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIA 181
QV + K G P ++ +++ GLM I P + K + F +A
Sbjct: 114 QVKFSDDPTKGGFNPEFLILKWREIQELKNISLTGLMTINPKGLSSKENSGLFKKCRVLA 173
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+L SMGM+ D+E AI +G+T +R+GS IFG R
Sbjct: 174 DSLQLPDCSMGMSSDWEEAIDAGSTWLRLGSLIFGGR 210
>gi|154322825|ref|XP_001560727.1| hypothetical protein BC1G_00755 [Botryotinia fuckeliana B05.10]
gi|150848089|gb|EDN23282.1| hypothetical protein BC1G_00755 [Botryotinia fuckeliana B05.10]
Length = 265
Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 75/247 (30%), Positives = 111/247 (44%), Gaps = 34/247 (13%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQE 60
+L + Q +++ N+A +V LVAVSK+ + I F EN QE
Sbjct: 12 TLISAFQSVSERVTNAAG-----TRNVRLVAVSKLKPATDILALHEQANVEHFGENYAQE 66
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS---LFDVIETVSREKTASLLSLEM---- 113
+K L + ++ FIG LQSNK + S ++ ++ +K AS LSL
Sbjct: 67 LMEKAEILPR--SIKWHFIGGLQSNKCKPLASTVFNLHLVSSIDSQKKASQLSLGRSLLP 124
Query: 114 -----IKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVI-LCRQKYQLNVEGLMCIPPA 166
L ++IQ+NT E KSG+ P T + + + L + G M I
Sbjct: 125 MPADSNSPPSPLNIHIQLNTSGESSKSGVSPGKDTTELCKYVIEECPYLKLVGFMTIGAI 184
Query: 167 ------MGNPKPHFYLLSE----IARECKLT--KLSMGMTRDFELAIASGATSVRIGSGI 214
G F +L E + +E L +LSMGM+ DFE AI G+ VR+GS I
Sbjct: 185 ARSQMKEGEENEDFKVLREERDRVEKELGLEGLELSMGMSEDFEEAIRQGSGEVRVGSTI 244
Query: 215 FGERPCQ 221
FG+RP +
Sbjct: 245 FGQRPAK 251
>gi|108760438|ref|YP_629997.1| hypothetical protein MXAN_1747 [Myxococcus xanthus DK 1622]
gi|108464318|gb|ABF89503.1| conserved hypothetical protein TIGR00044 [Myxococcus xanthus DK
1622]
Length = 212
Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 62/192 (32%), Positives = 89/192 (46%), Gaps = 11/192 (5%)
Query: 38 DSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI 97
+IR+A + G ENK+QEA K + D++ IG LQ+NK +
Sbjct: 2 PEARIRMAYAAGCRELGENKVQEALGKAEAMADLTDLRWSVIGHLQTNKAKVVARFASEF 61
Query: 98 ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNV 157
+ + + A L + + R L V +QVNT E K G+ P++ F L V
Sbjct: 62 QALDSLRVAEALDRRLQVEGRALDVLVQVNTSGEASKFGLPPDEVARFFRDLPAFSSLRV 121
Query: 158 EGLMCIPPAMGNP---KPHFYLLSEIARE--------CKLTKLSMGMTRDFELAIASGAT 206
GLM + +P +P F LL E+ + +LSMGM+ DFE A+ GAT
Sbjct: 122 RGLMTLALLSADPARVRPCFTLLRELRARLREEAPAGVTMNELSMGMSGDFEWAVEEGAT 181
Query: 207 SVRIGSGIFGER 218
VR+G IFG R
Sbjct: 182 IVRVGQAIFGPR 193
>gi|168575146|ref|ZP_02721109.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
MLV-016]
gi|183578772|gb|EDT99300.1| pyridoxal phosphate enzyme, YggS family [Streptococcus pneumoniae
MLV-016]
Length = 223
Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 58/226 (25%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV+K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVTKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ DV IG+LQ KV +++ D + K A + R +
Sbjct: 61 FLEKYEALKDR-DVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAGEIQKR---SDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K G + + + + ++ GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ E + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQIEIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|319760385|ref|YP_004124323.1| pyridoxal phosphate enzyme [Candidatus Blochmannia vafer str. BVAF]
gi|318039099|gb|ADV33649.1| pyridoxal phosphate enzyme [Candidatus Blochmannia vafer str. BVAF]
Length = 237
Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 66/224 (29%), Positives = 99/224 (44%), Gaps = 11/224 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ +L +I +A R ++ L+AV+K I+ ++ GQ F EN +QEA
Sbjct: 4 IQKQLNHIHNQIHIAAHNVNRNPQNIQLIAVTKNQSINTIKKSIFYGQRNFGENYVQEAL 63
Query: 63 KKWIPLRKEWD--VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
KK R + FIGS+QSNK+ I FD T+S EK+ L+ K+ L
Sbjct: 64 KKICWFRTHIPDKISWHFIGSIQSNKIRIIAENFDWCHTISNEKSIYHLNKHRPKKLSQL 123
Query: 121 PVYIQVNTGYEIQKSG-IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
IQ+N KSG I Q Q +L + G+M + K F
Sbjct: 124 NTLIQINISGNHNKSGIITIEQMLKLATTIYQCSKLKLRGIMSMSIPKSEFKQQMIQFKK 183
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + + LS+GM+ D AI SG+ +RIG+ IF
Sbjct: 184 VYTFFKRLQNICPHVDTLSLGMSNDILPAIYSGSNLLRIGTSIF 227
>gi|52550023|gb|AAU83872.1| conserved hypothetical protein [uncultured archaeon GZfos34H10]
Length = 224
Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 13/205 (6%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V L A +K +++ A+ G I EN +QEA++ + + + V FIG LQ
Sbjct: 19 PKDVVLEAAAKTRTTEETLAAIEAGITIVGENYIQEAERAFEVIGRV--VNWHFIGHLQR 76
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV + V LFD+IET+ A ++ K + +P+ I++N+G E QK G+ P +
Sbjct: 77 NKVKKAVELFDLIETIDSFSIAEEVNRVSSKIGKIMPILIEINSGREPQKFGVFPEYVAE 136
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECK--------LTKLSMGM 193
V+ + + GLM + P + + +F EI K + LSMGM
Sbjct: 137 LVVKISALASVKIVGLMTMGPYEEDIEKSRLYFRAAKEIFERIKKSGIPSVDMRFLSMGM 196
Query: 194 TRDFELAIASGATSVRIGSGIFGER 218
+ + +AI GA VR+G+GIFG R
Sbjct: 197 SDSYNIAIEEGANIVRVGTGIFGPR 221
>gi|255325339|ref|ZP_05366445.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium
tuberculostearicum SK141]
gi|255297904|gb|EET77215.1| pyridoxal phosphate enzyme, YggS family [Corynebacterium
tuberculostearicum SK141]
Length = 232
Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 62/232 (26%), Positives = 100/232 (43%), Gaps = 22/232 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L KIE A + R L+ V+K + I + G AEN+ QEA+
Sbjct: 8 LEHNLSATLAKIERLAAQSGRKP--PQLLPVTKFHPAADIALLAELGVTDVAENREQEAR 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL------SLEMIKQ 116
K L + ++ IG +Q+ K + + + ++ K A L + E ++
Sbjct: 66 AKATELPQ---LRFHMIGQIQTKKANHVARWAASVHSLDSLKLAHALERGVSLAKERGER 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
LPV+IQV+ + + G+ P + V + L + GLM +PP + F
Sbjct: 123 ESNLPVFIQVSADGDGARGGVSPEALDELVRAVEEAQHLELAGLMVVPPLDADAGEVFRN 182
Query: 177 LS--------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E+ R K S GM+ D AIA+G+ VR+G+ I G RP
Sbjct: 183 VRGEVDRLSSELNRPLKF---SAGMSADMAEAIAAGSDIVRVGTSIMGPRPV 231
>gi|229823113|ref|ZP_04449182.1| hypothetical protein GCWU000282_00409 [Catonella morbi ATCC 51271]
gi|229787279|gb|EEP23393.1| hypothetical protein GCWU000282_00409 [Catonella morbi ATCC 51271]
Length = 228
Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 57/229 (24%), Positives = 100/229 (43%), Gaps = 23/229 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDS--VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
+ ++ Q +I+ + L+AVSK V + +I+ GQ F EN+
Sbjct: 6 IQDRYQAVLDRIQKH------SPEGNAPQLIAVSKTVGADQIQALYDLGQRHFGENRYPA 59
Query: 61 AKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+K L + D+ FIG +Q+ +V E ++ D + + R A +
Sbjct: 60 LLEKQAALAQTAPDIVWHFIGRVQTRQVKEFINQIDYLHALDRFDLAKEIQKRA---DHP 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-NPKPHF---- 174
+ ++QVN E K+G P Q + ++ + GLM + PA + HF
Sbjct: 117 IKCFLQVNVSGEESKTGYEPEQVFAAIEQLAPYDKIEIVGLMTMAPADALEGELHFFFKT 176
Query: 175 -YLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
L + +E T+LSMGM++D+ +A GA+ +R+GS +F
Sbjct: 177 LKHLQLLVQEAGYPHAPCTELSMGMSQDYTIATEEGASFLRVGSALFAP 225
>gi|56541811|emb|CAD29783.1| putative proline synthetase associated protein [Oryza sativa]
Length = 220
Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 60/201 (29%), Positives = 89/201 (44%), Gaps = 16/201 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + + +A + R +SV +VAVSK IR G F EN +QE K
Sbjct: 10 LRSVLSRAQQAAARSGRAPESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELIDKAS 69
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FLPV 122
L + D++ FIG+LQSNK + V D++E+V +K A+ L + R L V
Sbjct: 70 QLPE--DIEWHFIGNLQSNKARALLAGVPNLDMVESVDDQKIANRLDRVVADLGRKPLKV 127
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPKPH-FYLL--- 177
+QVNT E K G+ P+ + + L GLM I + P F L
Sbjct: 128 LVQVNTSGEESKFGVNPSGCVELAKHVKLGCPNLVFSGLMTIGMLDYSSTPENFKALANC 187
Query: 178 -SEIARECKL----TKLSMGM 193
E+ +E + +LSM
Sbjct: 188 RKEVCKELGIXXEQCELSMAC 208
>gi|51013199|gb|AAT92893.1| YBL036C [Saccharomyces cerevisiae]
Length = 257
Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 68/241 (28%), Positives = 103/241 (42%), Gaps = 24/241 (9%)
Query: 3 LGNKLQVFKQKIENSAI--LAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
L + + ++ + A + L+ VSK+ + I++ G F EN +QE
Sbjct: 15 LIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQE 74
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIK--- 115
+K L D++ FIG LQ+NK ++ V +ET+ K A L+ K
Sbjct: 75 LIEKAKLLPD--DIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQP 132
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPN----QTKDFVILCRQKYQLNVEGLMCIPP-----A 166
+ +Q+NT +E QKSG+ + DF L + + + GLM I
Sbjct: 133 DCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFF-LSEECKYIKLNGLMTIGSWNVSHE 191
Query: 167 MGNPKPHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L E ++ KLSMGM+ DF AI G VRIG+ IFG RP +
Sbjct: 192 DSKENRDFATLVEWKKKIDAKFGTSLKLSMGMSADFREAIRQGTAEVRIGTDIFGARPPK 251
Query: 222 T 222
Sbjct: 252 N 252
>gi|260584174|ref|ZP_05851922.1| pyridoxal phosphate enzyme, YggS family [Granulicatella elegans
ATCC 700633]
gi|260158800|gb|EEW93868.1| pyridoxal phosphate enzyme, YggS family [Granulicatella elegans
ATCC 700633]
Length = 219
Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 55/222 (24%), Positives = 104/222 (46%), Gaps = 11/222 (4%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
M+ + + + +I+ S R V + V+K +++I+ S G FAEN+++
Sbjct: 1 MTMIKSNAEQIVTRIQQSCDKVSRDVQEVCPIIVTKNRTNEEIQEVYSLGFRHFAENRVE 60
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+ ++ +E D+ IG LQ KV +IV+ + R + +
Sbjct: 61 KLLERQEVFPQE-DIVWHLIGPLQKRKVKQIVNRIQYFHAIDRLSIMEEIEKRLDS---P 116
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYL 176
L +++VN E K G + +Q ++++ G M + P N + +F+
Sbjct: 117 LKCFLEVNVSGEESKHGFTKAGVFEAFEAAKQYEKIDIIGFMTMAPFEANEEEIRHYFHE 176
Query: 177 LSEIARECKLT---KLSMGMTRDFELAIASGATSVRIGSGIF 215
L E++++ + T KLSMGM++D+ +AI GA +RIG+ F
Sbjct: 177 LKEVSKKIQSTSTLKLSMGMSQDYPIAIEEGAHFIRIGTAWF 218
>gi|6319435|ref|NP_009517.1| hypothetical protein YBL036C [Saccharomyces cerevisiae S288c]
gi|586419|sp|P38197|YBD6_YEAST RecName: Full=UPF0001 protein YBL036C
gi|157830174|pdb|1B54|A Chain A, Crystal Structure Of A Yeast Hypothetical Protein-A
Structure From Bnl's Human Proteome Project
gi|463272|emb|CAA55058.1| YBL0413 [Saccharomyces cerevisiae]
gi|536047|emb|CAA84856.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285810298|tpg|DAA07083.1| TPA: hypothetical protein YBL036C [Saccharomyces cerevisiae S288c]
Length = 257
Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 68/241 (28%), Positives = 103/241 (42%), Gaps = 24/241 (9%)
Query: 3 LGNKLQVFKQKIENSAI--LAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
L + + ++ + A + L+ VSK+ + I++ G F EN +QE
Sbjct: 15 LIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQE 74
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIK--- 115
+K L D++ FIG LQ+NK ++ V +ET+ K A L+ K
Sbjct: 75 LIEKAKLLPD--DIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQP 132
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPN----QTKDFVILCRQKYQLNVEGLMCIPP-----A 166
+ +Q+NT +E QKSG+ + DF L + + + GLM I
Sbjct: 133 DCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFF-LSEECKYIKLNGLMTIGSWNVSHE 191
Query: 167 MGNPKPHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L E ++ KLSMGM+ DF AI G VRIG+ IFG RP +
Sbjct: 192 DSKENRDFATLVEWKKKIDAKFGTSLKLSMGMSADFREAIRQGTAEVRIGTDIFGARPPK 251
Query: 222 T 222
Sbjct: 252 N 252
>gi|46198503|ref|YP_004170.1| hypothetical protein TTC0195 [Thermus thermophilus HB27]
gi|12056565|emb|CAC21426.1| ylmE [Thermus thermophilus]
gi|46196125|gb|AAS80543.1| ylmE [Thermus thermophilus HB27]
Length = 211
Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 65/194 (33%), Positives = 96/194 (49%), Gaps = 8/194 (4%)
Query: 25 KDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
+ V LVAV+K ++IR L+ G E+++QEA KK L E +G LQ
Sbjct: 21 PEEVRLVAVTKGRSVEEIREKVLAYGTFPLGESRVQEALKKMDLLHAE----WHLVGHLQ 76
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NK F ++ ++ + A L K L V ++VN G E QK G++ +
Sbjct: 77 RNKAK-FAPRFALVHSLDSLRLAEALEKVGEKAGVRLKVLVEVNLGREPQKHGVLEEELP 135
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLSEIARECKLTKLSMGMTRDFELAI 201
+ + R+ L V GLM +PP +P F LSE+A L + SMGM+ D+E A+
Sbjct: 136 ELLPRLREMPHLEVLGLMTVPPIGPEAVVRPIFRRLSELADRYGLPERSMGMSDDYEWAV 195
Query: 202 ASGATSVRIGSGIF 215
GAT VR+G +F
Sbjct: 196 EEGATLVRVGRALF 209
>gi|151946358|gb|EDN64580.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190408862|gb|EDV12127.1| hypothetical protein SCRG_02999 [Saccharomyces cerevisiae RM11-1a]
gi|207347852|gb|EDZ73897.1| YBL036Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272725|gb|EEU07698.1| YBL036C-like protein [Saccharomyces cerevisiae JAY291]
gi|259144811|emb|CAY77750.1| EC1118_1B15_0870p [Saccharomyces cerevisiae EC1118]
gi|323338793|gb|EGA80008.1| YBL036C-like protein [Saccharomyces cerevisiae Vin13]
gi|323349874|gb|EGA84087.1| YBL036C-like protein [Saccharomyces cerevisiae Lalvin QA23]
Length = 257
Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 68/241 (28%), Positives = 102/241 (42%), Gaps = 24/241 (9%)
Query: 3 LGNKLQVFKQKIENSAI--LAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
L + + ++ + A + L+ VSK+ + I++ G F EN +QE
Sbjct: 15 LIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQE 74
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIK--- 115
+K L D++ FIG LQ+NK ++ V +ET+ K A L+ K
Sbjct: 75 LIEKAKLLPD--DIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQP 132
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPN----QTKDFVILCRQKYQLNVEGLMCIPP-----A 166
+ +Q+NT E QKSG+ + DF L + + + GLM I
Sbjct: 133 DCNPILCNVQINTSREDQKSGLNNEAEIFEVIDFF-LSEECKYIKLNGLMTIGSWNVSHE 191
Query: 167 MGNPKPHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L E ++ KLSMGM+ DF AI G VRIG+ IFG RP +
Sbjct: 192 DSKENRDFATLVEWKKKIDAKFGTSLKLSMGMSADFREAIRQGTAEVRIGTDIFGARPPK 251
Query: 222 T 222
Sbjct: 252 N 252
>gi|253581436|ref|ZP_04858661.1| proline synthetase associated protein [Fusobacterium varium ATCC
27725]
gi|251836506|gb|EES65041.1| proline synthetase associated protein [Fusobacterium varium ATCC
27725]
Length = 225
Score = 209 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 16/226 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + ++ I+ ++ ++R +AV+K V ++++ ++CG +F ENK Q
Sbjct: 3 DIKKNILEIEEDIKKHSLNSERA----RFIAVTKYVGAEEMIPIVNCGVKVFGENKAQIM 58
Query: 62 KKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K+K + DV+ FIG+LQ NKV I +I +V++ A + + +R
Sbjct: 59 KEKQEKFNEMGIKDVEWHFIGNLQKNKVKYIAEYVKMIHSVNKLSLAQEIDKRAKQYNRI 118
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYL 176
+ V +++N E K G + + + + +N+ GLM + P + + + F
Sbjct: 119 IDVLLEINIAGEESKEGYELEELYEELPQLMELKNINIVGLMTMAPFVNDEELLRSVFRR 178
Query: 177 LSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L EI E KL +LSMGMT D+++A+ GAT +R+G IF
Sbjct: 179 LREIKDELNEKWFKGKLVELSMGMTNDYKIALEEGATLIRVGRKIF 224
>gi|296129029|ref|YP_003636279.1| alanine racemase domain protein [Cellulomonas flavigena DSM 20109]
gi|296020844|gb|ADG74080.1| alanine racemase domain protein [Cellulomonas flavigena DSM 20109]
Length = 255
Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats.
Identities = 66/242 (27%), Positives = 103/242 (42%), Gaps = 24/242 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL-------SCGQVI-- 52
+ +L ++++ + A R D V ++ SK +D +R AL + G
Sbjct: 12 DVARRLAQVQERVAAACAAAARRPDEVRVLLASKTMDVATVRAALLADTAARTAGATHAP 71
Query: 53 --FAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS 110
EN++QE K L + IG LQSNKV+ + +E+V+ + A LS
Sbjct: 72 VLLGENRVQELVTKAPALAD-LEPTWHVIGPLQSNKVNAALRWAAAVESVADDALARRLS 130
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
+ + L V++Q N E K G+ P+ D + L + GLM + +
Sbjct: 131 GRAQGREQPLDVWVQANVSGEPTKHGVAPDAAADLAVRVAALPGLRLAGLMTVGARSDDE 190
Query: 171 ---KPHFYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ F L + E LSMGM+ D E A+A GAT VRIG+ +FG R
Sbjct: 191 RVVRAGFARLRAVRDEVVASGEPGTEHAHGLSMGMSGDLEAAVAEGATVVRIGTAVFGLR 250
Query: 219 PC 220
Sbjct: 251 AT 252
>gi|261187897|ref|XP_002620366.1| alanine racemase [Ajellomyces dermatitidis SLH14081]
gi|239593483|gb|EEQ76064.1| alanine racemase [Ajellomyces dermatitidis SLH14081]
gi|239608462|gb|EEQ85449.1| alanine racemase [Ajellomyces dermatitidis ER-3]
gi|327356074|gb|EGE84931.1| alanine racemase [Ajellomyces dermatitidis ATCC 18188]
Length = 297
Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats.
Identities = 75/263 (28%), Positives = 113/263 (42%), Gaps = 44/263 (16%)
Query: 2 SLGNKLQVFKQKIENSAILA-----KRPKDSVSLVAVSKMVDSKKIRVALSCGQV-IFAE 55
+L L +I ++ +RP+ V L+AVSK+ + +++ F E
Sbjct: 25 ALITNLSAVTARIAAASAKVPQTQPQRPQRPVRLLAVSKIKPASDVQILHEHNPTLHFGE 84
Query: 56 NKLQEAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFD---VIETVSREKTASLLSL 111
N QE +K L+ +V+ FIG LQSNK + +E+V EK A+LL+
Sbjct: 85 NYFQELLEKSRALKALSPEVRWHFIGGLQSNKCVSLARDVPGLFAVESVDTEKKANLLNR 144
Query: 112 EMIKQ-----------SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEG 159
++ L VY+QVNT E KSG+ P + R+ +L + G
Sbjct: 145 GWGERLAAAGDADADAENRLRVYVQVNTSGEANKSGVEPVEATRLCRHIRENCPRLKLVG 204
Query: 160 LMCI-------PPAMGNPKPHFYLLSEIARECKLTKL--------------SMGMTRDFE 198
LM I + N F L E + +L SMGMT+D+E
Sbjct: 205 LMTIGALARSQATTLENENEDFLCLRETRDRVE-KELGLAGEDGEGEGLELSMGMTQDYE 263
Query: 199 LAIASGATSVRIGSGIFGERPCQ 221
AI G+ VR+G+ IFG RP +
Sbjct: 264 GAIKMGSDQVRVGAEIFGPRPPK 286
>gi|317157756|ref|XP_003190876.1| alanine racemase family protein [Aspergillus oryzae RIB40]
Length = 282
Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats.
Identities = 79/253 (31%), Positives = 113/253 (44%), Gaps = 35/253 (13%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS--CGQVIFAENKLQ 59
+L + L ++ +A A + + L+AVSK+ + + + F EN LQ
Sbjct: 26 TLLSNLGSVTSRVTAAATKAAKESRPIRLIAVSKLKPAADVLALHQPPASHLHFGENYLQ 85
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF---DVIETVSREKTASLLSL----- 111
E ++K L ++ FIG LQSNK + +E+V EK ASLL
Sbjct: 86 ELQEKSKLLP--PTIKWHFIGGLQSNKCVTLARDVRGLWAVESVDSEKKASLLDKGWGER 143
Query: 112 ----EMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQ-KYQLNVEGLMCIPP 165
Q L V++QVNT E KSG+ P + R+ +L ++G+M I
Sbjct: 144 SEELRATDQESQLRVFVQVNTSGEENKSGVDPVSGAVSLCRFIREKCPRLKLQGVMTIGA 203
Query: 166 AM-------GNPKPHFYLLSE----IARECKLT------KLSMGMTRDFELAIASGATSV 208
F L E I RE KL +LSMGM+ DFE AIA G+ V
Sbjct: 204 IARSKATTPETENEDFVCLRETRDRIVRELKLEGEDARLELSMGMSEDFEGAIALGSDEV 263
Query: 209 RIGSGIFGERPCQ 221
R+G+ IFGERP +
Sbjct: 264 RVGTTIFGERPPK 276
>gi|255936135|ref|XP_002559094.1| Pc13g06610 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583714|emb|CAP91730.1| Pc13g06610 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 268
Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats.
Identities = 78/247 (31%), Positives = 109/247 (44%), Gaps = 36/247 (14%)
Query: 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC--GQVIFAENKLQEAKKKWIP 67
+ ++ +A+ + P + LVAVSK+ + Q+ F EN LQE +K
Sbjct: 19 VRARVSTAALQSPIPSKPIRLVAVSKLKPASDALALHQTPGSQLHFGENYLQELLEKSRL 78
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLF---DVIETVSREKTASLLSLEMIKQSR------ 118
L ++ FIG LQSNK + +E+V EK A LL +S
Sbjct: 79 LPA--SIKWHFIGGLQSNKCVTLARDVPGLWAVESVDSEKKAKLLDKGWGDRSPEMAATN 136
Query: 119 -----FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPA------ 166
L VY+QVNT E K+GI P R Q +L ++G M I
Sbjct: 137 HDEDGRLRVYVQVNTSGEENKAGIEPAGAAALCRYVREQCSRLKLQGFMTIGAIARSRVT 196
Query: 167 -MGNPKPHFYLLSEIA----RECKLT------KLSMGMTRDFELAIASGATSVRIGSGIF 215
+ N F LS+ RE L +LSMGM+ DFE AIA G+ VR+G+ IF
Sbjct: 197 TVENENEDFVCLSDTRDRVVRELGLVGDEAALELSMGMSSDFEGAIALGSDQVRVGTTIF 256
Query: 216 GERPCQT 222
G+RP +
Sbjct: 257 GDRPPKA 263
>gi|148241568|ref|YP_001226725.1| TIM-barrel fold family protein [Synechococcus sp. RCC307]
gi|147849878|emb|CAK27372.1| Predicted enzyme with a TIM-barrel fold [Synechococcus sp. RCC307]
Length = 212
Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats.
Identities = 62/219 (28%), Positives = 100/219 (45%), Gaps = 13/219 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
SL + + Q++ V L+AVSK + +IR GQ F E+++QEA
Sbjct: 3 SLAQRYEAILQEL----------PPGVKLLAVSKGRSAAEIRALYGLGQRSFGESRVQEA 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K L D+ +FIG LQ+NKV ++ F I V A+ +S +
Sbjct: 53 ALKQQELADLADIDWQFIGRLQANKVRPVLKAFTTIHAVDSFNLAARVSRIAGELGLCPQ 112
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE-- 179
+Y+Q+ + K+G+ + + + ++ +G+M IPP + L +E
Sbjct: 113 LYLQLKLRPDANKAGLSWAEAQSLWPQLQNLPHVHWQGVMVIPPRELAEQDLGALFAEAV 172
Query: 180 -IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
A L SMGM+ D+ LA G+T VR+GS +FG
Sbjct: 173 GHADALGLAGRSMGMSGDWPLAAQQGSTVVRVGSALFGS 211
>gi|313816052|gb|EFS53766.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL059PA1]
gi|315098477|gb|EFT70453.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL059PA2]
Length = 198
Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats.
Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 13/195 (6%)
Query: 41 KIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIET 99
+ A G +F ENK+Q+A K + ++ IG LQ+NKV + +
Sbjct: 1 MVDEAYRAGYRLFGENKVQDALAKSELMDANHPGLEWSIIGGLQTNKVKYVARFATEFQA 60
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ K A L + K+ R L V +QVN+ E QKSGI P + DF L+V G
Sbjct: 61 LDSLKIAHELDKRLQKEGRQLRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRG 120
Query: 160 LMCIPPAMGNPK---PHFYLL----SEIARECK----LTKLSMGMTRDFELAIASGATSV 208
LM + + + F L+ ++ +E ++LSMGM+ D E+AIA G+T V
Sbjct: 121 LMTVALNSSDQRAVADCFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQV 180
Query: 209 RIGSGIFGER-PCQT 222
RIG+ IFG R P +T
Sbjct: 181 RIGTDIFGARDPART 195
>gi|15903552|ref|NP_359102.1| hypothetical protein spr1509 [Streptococcus pneumoniae R6]
gi|116516370|ref|YP_816934.1| YlmE protein [Streptococcus pneumoniae D39]
gi|15459170|gb|AAL00313.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076946|gb|ABJ54666.1| YlmE protein [Streptococcus pneumoniae D39]
Length = 223
Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats.
Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 15/226 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M++ ++ +++ +++ A R SVS++AV K VD L G EN++ +
Sbjct: 1 MNVKENTELVFREVAEASLSAHRESGSVSVIAVIKYVDVPTAEALLPLGVHHIGENRVDK 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K+ L+ DV IG+LQ KV +++ D + K A + R +
Sbjct: 61 FLEKYEALKDR-DVTWHLIGTLQRRKVKDVIQYVDYFHALDSVKLAGEIQKR---SDRVI 116
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLL 177
++QVN E K G + + + + ++ GLM + P + + F
Sbjct: 117 KCFLQVNISKEESKHGFSREELLEILPELARLDKIEYVGLMTMAPFEASSEQLKEIFKAA 176
Query: 178 SEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ RE + +T+LSMGM+RD++ AI G+T VRIG+ F
Sbjct: 177 QDLQREIQEKQIPNMPMTELSMGMSRDYKEAIQFGSTFVRIGTSFF 222
>gi|296166015|ref|ZP_06848467.1| alanine racemase domain protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898636|gb|EFG78190.1| alanine racemase domain protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 262
Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 92/240 (38%), Gaps = 23/240 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + G E++ QEA
Sbjct: 18 LTHALAAVRSRLAAAAEAAGRNVGEIELLPITKFFPATDVVTLSRLGCRAVGESRDQEAS 77
Query: 63 KKWIPL---------RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL-- 111
K + ++ +G +Q NK + +V S L
Sbjct: 78 AKVSEVTKLLAASSRSDGPALRWHMVGHIQRNKARSVARWAHTAHSVDSLHLVSALDKGV 137
Query: 112 -EMIKQSR---FLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
I + R + VYIQ++ + + G+ P + L + GLM IP
Sbjct: 138 SAAIAEGRRADPMRVYIQISLDGDASRGGVDISAPGAVDQLCAQAEEAKHLELAGLMAIP 197
Query: 165 PAMGNPKPHFYLLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P +P F L + LS GM+ DFE+A+ G+T VR+G+ + G RP
Sbjct: 198 PLGSDPDAAFGRLRTEHLRVLQSHPNAVGLSAGMSDDFEIAVKHGSTCVRVGTALLGPRP 257
>gi|224372989|ref|YP_002607361.1| hypothetical protein NAMH_0959 [Nautilia profundicola AmH]
gi|223589859|gb|ACM93595.1| conserved hypothetical protein [Nautilia profundicola AmH]
Length = 219
Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats.
Identities = 54/222 (24%), Positives = 112/222 (50%), Gaps = 16/222 (7%)
Query: 6 KLQVFKQKIENSAILAKRPKD-SVSLVAVSK-MVDSKKIRVALSCGQVIFAENKLQEAKK 63
L Q++E + + R + V +VAV+K +++ +R + GQ F EN++Q+ +
Sbjct: 2 NLDQLIQRVEAARLR--RSEHLIVQIVAVTKYTKETEPLRRLYAEGQRAFGENRVQDMED 59
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD-VIETVSREKTASLLSLEMIKQSRFLPV 122
K L ++ FIG+LQ NK+++++ L +I++++ + A ++ + +
Sbjct: 60 KVNALSDLP-IEWHFIGNLQKNKINKLLKLNPFMIQSINSYELAEAINKR---TDKPVRC 115
Query: 123 YIQVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+++N+ E K G+ P + ++ + +N++G+M I + + + F L
Sbjct: 116 LLEINSAKEPTKHGLQPELAIETYLKIKENLPNINLQGVMTIGAHVDDETEIRKSFRLTY 175
Query: 179 EIARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+I + K SMGM+ DFE+AI G+ +R+GS +
Sbjct: 176 DIFEKLKPYGAKICSMGMSGDFEIAIEEGSNMIRVGSALLNS 217
>gi|163841224|ref|YP_001625629.1| putative cytoplasmic protein [Renibacterium salmoninarum ATCC
33209]
gi|162954700|gb|ABY24215.1| hypothetical cytosolic protein [Renibacterium salmoninarum ATCC
33209]
Length = 246
Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats.
Identities = 61/236 (25%), Positives = 95/236 (40%), Gaps = 19/236 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
LG L KQ+I + + R D+ L+ V+K + + + G + EN+ QEA
Sbjct: 10 LGANLDAVKQRIAVAVSASGR-VDTPQLIVVTKFHPAADVALLADLGVMEVGENRDQEAA 68
Query: 63 KKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL------EMIK 115
K L R D+ FIG LQ+NK + + +V R L+
Sbjct: 69 AKQAELARAGIDLHWHFIGQLQTNKAKSVARYAYSVHSVDRPALVQALAKAVTAELAAGH 128
Query: 116 QSRFLPVYIQVNTG------YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN 169
+S L +QV+ + G P++ L + G+M + P +
Sbjct: 129 RSTTLGCLVQVDLDPLELVPGSSPRGGARPHEVLAIADEIVAADSLELLGVMAVTPLGAD 188
Query: 170 PKPHFYLLSEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
P F L+ I+ R +S GM+ D AI GAT +R+GS + G RP
Sbjct: 189 PDEAFSRLATISAELVNRHPAAKAISAGMSGDLAAAIKHGATHLRVGSDVLGPRPA 244
>gi|320528155|ref|ZP_08029320.1| pyridoxal phosphate enzyme, YggS family [Solobacterium moorei
F0204]
gi|320131503|gb|EFW24068.1| pyridoxal phosphate enzyme, YggS family [Solobacterium moorei
F0204]
Length = 218
Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats.
Identities = 63/217 (29%), Positives = 105/217 (48%), Gaps = 21/217 (9%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
KI+ +A+ + L VSK ++I+ G+ IFAEN+ E K L K
Sbjct: 8 KIKQAAL-------DIDLCVVSKHHSIEEIQSYYDAGERIFAENRATELIFKAGTLPK-- 58
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
D+ +IG LQ NKV EI+ + I+++ A ++ E K +R + V I+++ E
Sbjct: 59 DIAWHYIGHLQRNKVKEILPIVSCIQSLDNIALAKVIEKEATKLNRTVNVLIELHLADED 118
Query: 133 -QKSGIMPNQTKDFVI-LCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEIARECK-- 185
KSG+ P F L ++ ++++GLM + P + F +I + +
Sbjct: 119 TNKSGLDPADVDMFTNFLLQECPHISIQGLMTMGPHTEDTARIHEVFAKAQDIFKHLQET 178
Query: 186 -----LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
LSMGM+ D+ +AI G+T +RIG+ +F E
Sbjct: 179 FGKQYFHTLSMGMSHDYPIAIEHGSTMLRIGTYLFEE 215
>gi|311741534|ref|ZP_07715358.1| YggS family pyridoxal phosphate enzyme [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311303704|gb|EFQ79783.1| YggS family pyridoxal phosphate enzyme [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 232
Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats.
Identities = 61/232 (26%), Positives = 101/232 (43%), Gaps = 22/232 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + +IE A + R L+ V+K + I + G AEN+ QEA+
Sbjct: 8 LEHNLSDTRAEIERLAAQSGRKP--PQLLPVTKFHPAADISLLADLGVTDVAENREQEAR 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASL------LSLEMIKQ 116
K L + ++ IG +Q+ K + + + ++ K A L+ E ++
Sbjct: 66 AKAAELPQ---LRFHMIGQIQTKKANHVARWAASVHSLDSLKLAHALERGVSLAKERGER 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
LPV+IQV+ + + G+ P+ + V L + GLM +PP + F
Sbjct: 123 EGNLPVFIQVSVDGDGARGGVTPDVLDEVVRAVEDAQHLELAGLMVVPPLDADAGEVFRN 182
Query: 177 LS--------EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E+ R K S GM+ D AIA+G+ VR+G+ I G RP
Sbjct: 183 VRGEVDRLSSELNRPLKF---SAGMSADMAEAIAAGSDIVRVGTSIMGPRPV 231
>gi|139437185|ref|ZP_01771345.1| Hypothetical protein COLAER_00324 [Collinsella aerofaciens ATCC
25986]
gi|133776832|gb|EBA40652.1| Hypothetical protein COLAER_00324 [Collinsella aerofaciens ATCC
25986]
Length = 267
Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats.
Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 18/233 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + ++ + A RP D+ SL+AVSK V + A+ G FAEN+ QE
Sbjct: 30 MRARREQILERFYAALDRAGRPHDAASLIAVSKTVGVDETVAAIQAGYRHFAENRPQELV 89
Query: 63 KKWIPL---RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR- 118
+K L + +V+ IG+LQ+NK++ ++ ++I +V A +S +++
Sbjct: 90 RKLTGLAEHPELPEVRFDMIGNLQTNKINAVLGSAELIHSVGSLHLAQAISSRAVRKIEA 149
Query: 119 -----FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP--AMGNPK 171
V I+VN E K G P++ + + + V+GLM + P +
Sbjct: 150 GELVGPQRVLIEVNVSGEESKRGFSPDEIRAAAGELAELEGICVQGLMTMAPRGNKDVAR 209
Query: 172 PHFYLLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
F L E+ E + L +LS GM+ DFE A+ G+T VR+G +F
Sbjct: 210 RTFAGLRELRDELEAAHPDLNLPELSCGMSEDFESALEEGSTLVRLGRVVFSP 262
>gi|325282518|ref|YP_004255059.1| hypothetical protein Deipr_0269 [Deinococcus proteolyticus MRP]
gi|324314327|gb|ADY25442.1| protein of unknown function UPF0001 [Deinococcus proteolyticus MRP]
Length = 217
Score = 208 bits (531), Expect = 4e-52, Method: Composition-based stats.
Identities = 70/224 (31%), Positives = 107/224 (47%), Gaps = 14/224 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR-VALSCGQVIFAENKLQ 59
MSL + +I + A R + S LVAV+K ++IR L+ G EN+ Q
Sbjct: 1 MSLPD----VLSRIRTAEARAGRLQGSARLVAVTKGHSLEEIRRKVLAHGNFPLGENRGQ 56
Query: 60 EAKKKWIPLRKE----WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
E + K + + +IG LQSNKV + +I + A ++ K
Sbjct: 57 EVRDKVAEWTETAQGAPQPEWHYIGPLQSNKVKYL-ERVALIHAIEDVAQAETVARYAEK 115
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM--GNPKPH 173
R V +Q++ G E QK GI P + + R L+V GLM + P +
Sbjct: 116 WGRAPGVLLQLHNG-EAQKHGIAPAELSGVLAGVRAT-GLDVRGLMVMAPYGQPEEARRI 173
Query: 174 FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
F + ++ A + L++LSMGM+ DFE A+ G+T VR+GS +FGE
Sbjct: 174 FRVAAQRAHDLGLSELSMGMSGDFEAAVEEGSTLVRVGSALFGE 217
>gi|220912344|ref|YP_002487653.1| alanine racemase domain protein [Arthrobacter chlorophenolicus A6]
gi|219859222|gb|ACL39564.1| alanine racemase domain protein [Arthrobacter chlorophenolicus A6]
Length = 245
Score = 208 bits (530), Expect = 4e-52, Method: Composition-based stats.
Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ +++I + A R L+ ++K + IR + G EN+ Q
Sbjct: 15 LAQRLEAVRERIAKAVASAGRGGQPPRLIVITKFHPADDIRRLAALGVTDVGENRDQ-EA 73
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL-----EMIKQS 117
+ F+G LQ+ K +V + +V R + L+ +
Sbjct: 74 AAKAAELAGAGLAWHFVGQLQTKKAKSVVRYAAAVHSVDRPQLVDALAKAVLNEQAATGR 133
Query: 118 RFLPVYIQVNTGYE--IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
L +IQV+ + + G +P L + G+M + P P+P F
Sbjct: 134 EPLDCFIQVSLEDDAGAHRGGALPADVPALADRIATAEGLRLAGVMAVAPLGAAPEPAFE 193
Query: 176 LLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L++ + T +S GM++D E AI GAT +RIGS I G RP
Sbjct: 194 KLAKVSELLVRDHPAATGISAGMSQDLEAAIKFGATHLRIGSDILGSRPA 243
>gi|295662246|ref|XP_002791677.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
gi|226279803|gb|EEH35369.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01]
Length = 303
Score = 208 bits (530), Expect = 5e-52, Method: Composition-based stats.
Identities = 83/276 (30%), Positives = 118/276 (42%), Gaps = 58/276 (21%)
Query: 2 SLGNKLQVFKQKIENSAILA----------KRPKDS--VSLVAVSKMVDSKKIRVALSCG 49
+L L +I +++ A RP+ V LVAVSK+ + I++ +
Sbjct: 24 TLLANLSAVTARIASASASAAANTSRTKTQSRPQTQRPVRLVAVSKLKPASDIQILHNHD 83
Query: 50 QV-IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF---DVIETVSREKT 105
F EN LQE +K L ++ FIG LQSNK + +E+V EK
Sbjct: 84 PRLHFGENYLQELLEKSKVLP--CGIRWHFIGGLQSNKCVTLARDVRGLWAVESVDTEKK 141
Query: 106 ASLLSLEMIKQ-----------------SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
ASLL ++ L V++QVNT E KSG+ P +
Sbjct: 142 ASLLDRGWGERDVDVNEEGGKKGQSINAGDRLRVFVQVNTSGEESKSGVKPAEAVSLCRF 201
Query: 149 CRQ-KYQLNVEGLMCI-------PPAMGNPKPHFYLLSE----IARECKL---------- 186
R+ +L ++GLM I + N F L E + +E +L
Sbjct: 202 IREKCPRLKLQGLMTIGAIARSKATTVENENEDFVCLRETRDMVEKELELVADEGEGGAE 261
Query: 187 -TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+LSMGM+ DFE AIA G+ VRIGS IFG RP +
Sbjct: 262 GLELSMGMSEDFEGAIAMGSNQVRIGSTIFGARPPK 297
>gi|325962954|ref|YP_004240860.1| hypothetical protein Asphe3_15570 [Arthrobacter phenanthrenivorans
Sphe3]
gi|323469041|gb|ADX72726.1| conserved hypothetical protein TIGR00044 [Arthrobacter
phenanthrenivorans Sphe3]
Length = 244
Score = 207 bits (529), Expect = 6e-52, Method: Composition-based stats.
Identities = 62/230 (26%), Positives = 99/230 (43%), Gaps = 13/230 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L + +I ++A A R +L+ V+K + IR S G EN+ Q
Sbjct: 14 LAGRLTAVQGRISSAAAAAGRVGPLPTLIVVTKFHPAGDIRRLASLGVTDVGENRDQ-EA 72
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR---- 118
L + + F+G LQ+ K + + +V R + L+ + K+
Sbjct: 73 AAKAELLADCGLTWHFVGQLQTKKAKSVARYASAVHSVDRLQLVEALAKAVQKEQERTGR 132
Query: 119 -FLPVYIQVNTGYEI--QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
L +IQV+ + + G MP + L + G+M + P P+P F
Sbjct: 133 APLDCFIQVSLEDDAGTHRGGAMPAEVPLLADAIAAAEGLRLAGVMAVAPLGAPPEPAFE 192
Query: 176 LLS-----EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+ +A+ T +S GM++D E AIA GAT +RIGS I G RP
Sbjct: 193 KLAGVSAQLVAQHPAATAISAGMSQDLEAAIAFGATHLRIGSDILGSRPA 242
>gi|313764511|gb|EFS35875.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL013PA1]
gi|313772106|gb|EFS38072.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL074PA1]
gi|313792198|gb|EFS40299.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL110PA1]
gi|313801851|gb|EFS43085.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL110PA2]
gi|313807460|gb|EFS45947.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL087PA2]
gi|313809970|gb|EFS47691.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL083PA1]
gi|313812998|gb|EFS50712.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL025PA1]
gi|313818505|gb|EFS56219.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL046PA2]
gi|313820271|gb|EFS57985.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL036PA1]
gi|313822920|gb|EFS60634.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL036PA2]
gi|313825148|gb|EFS62862.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL063PA1]
gi|313827719|gb|EFS65433.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL063PA2]
gi|313830299|gb|EFS68013.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL007PA1]
gi|313833673|gb|EFS71387.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL056PA1]
gi|313838675|gb|EFS76389.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL086PA1]
gi|314915505|gb|EFS79336.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL005PA4]
gi|314918210|gb|EFS82041.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL050PA1]
gi|314920025|gb|EFS83856.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL050PA3]
gi|314925158|gb|EFS88989.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL036PA3]
gi|314932039|gb|EFS95870.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL067PA1]
gi|314955909|gb|EFT00309.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL027PA1]
gi|314958221|gb|EFT02324.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL002PA1]
gi|314960058|gb|EFT04160.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL002PA2]
gi|314962857|gb|EFT06957.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL082PA1]
gi|314967775|gb|EFT11874.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL037PA1]
gi|314973304|gb|EFT17400.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL053PA1]
gi|314975982|gb|EFT20077.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL045PA1]
gi|314983999|gb|EFT28091.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL005PA1]
gi|315078072|gb|EFT50123.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL053PA2]
gi|315080700|gb|EFT52676.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL078PA1]
gi|315085713|gb|EFT57689.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL002PA3]
gi|315096219|gb|EFT68195.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL038PA1]
gi|315101163|gb|EFT73139.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL046PA1]
gi|315105439|gb|EFT77415.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL030PA1]
gi|315108384|gb|EFT80360.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL030PA2]
gi|327326131|gb|EGE67921.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL096PA2]
gi|327331994|gb|EGE73731.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL096PA3]
gi|327443196|gb|EGE89850.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL013PA2]
gi|327445981|gb|EGE92635.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL043PA2]
gi|327448039|gb|EGE94693.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL043PA1]
gi|327450839|gb|EGE97493.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL087PA3]
gi|327453084|gb|EGE99738.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL092PA1]
gi|327453815|gb|EGF00470.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL083PA2]
gi|328754258|gb|EGF67874.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL087PA1]
gi|328754491|gb|EGF68107.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL025PA2]
gi|328760647|gb|EGF74214.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL099PA1]
Length = 198
Score = 207 bits (529), Expect = 6e-52, Method: Composition-based stats.
Identities = 64/195 (32%), Positives = 95/195 (48%), Gaps = 13/195 (6%)
Query: 41 KIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIET 99
+ A G +F ENK+Q+A K + ++ IG LQ+NK + +
Sbjct: 1 MVDEAYRAGYRLFGENKVQDALAKSELMDANHPGLEWSIIGGLQTNKAKYVARFATEFQA 60
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ K A L + K+ R L V +QVN+ E QKSGI P + DF L+V G
Sbjct: 61 LDSLKIAHELDKRLQKEGRQLRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRG 120
Query: 160 LMCIPPAMGNPK---PHFYLL----SEIARECK----LTKLSMGMTRDFELAIASGATSV 208
LM + + + F L+ ++ +E ++LSMGM+ D E+AIA G+T V
Sbjct: 121 LMTVALNSSDQRAVADCFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQV 180
Query: 209 RIGSGIFGER-PCQT 222
RIG+ IFG R P +T
Sbjct: 181 RIGTDIFGARDPART 195
>gi|314923046|gb|EFS86877.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL001PA1]
gi|314966818|gb|EFT10917.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL082PA2]
gi|315093262|gb|EFT65238.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL060PA1]
gi|315103480|gb|EFT75456.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL050PA2]
gi|327327644|gb|EGE69420.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL103PA1]
Length = 198
Score = 207 bits (529), Expect = 6e-52, Method: Composition-based stats.
Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 13/195 (6%)
Query: 41 KIRVALSCGQVIFAENKLQEAKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIET 99
+ A G +F ENK+Q+A K + + ++ IG LQ+NK + +
Sbjct: 1 MVDEAYRAGYRLFGENKVQDALAKSELMDDDHPGLEWSIIGGLQTNKAKYVARFATEFQA 60
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ K A L + K+ R L V +QVN+ E QKSGI P + DF L+V G
Sbjct: 61 LDSLKIAHELDKRLQKEGRQLRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRG 120
Query: 160 LMCIPPAMGNPK---PHFYLL----SEIARECK----LTKLSMGMTRDFELAIASGATSV 208
LM + + + F L+ ++ +E ++LSMGM+ D E+AIA G+T V
Sbjct: 121 LMTVALNSSDQRAVADCFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQV 180
Query: 209 RIGSGIFGER-PCQT 222
RIG+ IFG R P +T
Sbjct: 181 RIGTDIFGTRDPVRT 195
>gi|302674964|ref|XP_003027166.1| hypothetical protein SCHCODRAFT_61244 [Schizophyllum commune H4-8]
gi|300100852|gb|EFI92263.1| hypothetical protein SCHCODRAFT_61244 [Schizophyllum commune H4-8]
Length = 280
Score = 207 bits (529), Expect = 6e-52, Method: Composition-based stats.
Identities = 75/269 (27%), Positives = 114/269 (42%), Gaps = 55/269 (20%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQ 59
+ L + LQ + +++ ++ + + +LVAVSK + + GQ F EN +Q
Sbjct: 12 LELLDNLQDIRDRVKAASGAS-----NPTLVAVSKYKPASDVLACFEHAGQRDFGENYVQ 66
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMIKQS 117
E K L E ++ FIG+LQSNK +V I+T++ K A+LL+ + +
Sbjct: 67 ELVDKAKQLPAE--IRWHFIGTLQSNKSKTLVAIPNLHTIQTLTSTKAANLLNKALSEAG 124
Query: 118 ---RFLPVYIQVNTGYEIQKSGIMP-------------NQTKDFVIL----CRQKYQLNV 157
R L V IQVNT E KSG+ P T + V L L +
Sbjct: 125 DAQRRLNVLIQVNTSGEENKSGLPPLTSTDATLTQTDAADTHELVKLAVHVLEHCPFLRL 184
Query: 158 EGLMCIP-------PAMGNPKPHFYLLSEIARECKL--------------TK----LSMG 192
+GLM I G F L + + +SMG
Sbjct: 185 QGLMTIGSIEQSINAKEGEENHDFKTLLATRDALQAHLGARFADKTAAYGEEGRLLVSMG 244
Query: 193 MTRDFELAIASGATSVRIGSGIFGERPCQ 221
M+ DFE A+ +G+ VR+G+GIFG R +
Sbjct: 245 MSADFEAALRAGSDIVRVGTGIFGGRRTK 273
>gi|308233437|ref|ZP_07664174.1| alanine racemase domain protein [Atopobium vaginae DSM 15829]
gi|328943779|ref|ZP_08241244.1| alanine racemase domain protein [Atopobium vaginae DSM 15829]
gi|327491748|gb|EGF23522.1| alanine racemase domain protein [Atopobium vaginae DSM 15829]
Length = 259
Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats.
Identities = 59/224 (26%), Positives = 107/224 (47%), Gaps = 11/224 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + ++I N+ + R D + L AVSK VD +I A G +F EN+ Q +
Sbjct: 28 LRERKAYLSERITNAVQKSGRSLDDIQLCAVSKTVDVPEILAASRAGYTLFGENRPQALR 87
Query: 63 KKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + L+ ++ ++ IG+LQ NK++ ++ I++VS + A L+ +
Sbjct: 88 DKALSLKSAIQQGSLRFDMIGNLQLNKINMVLDNCCRIQSVSSLELARALNKHAGAKGLR 147
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP--AMGNPKPHFYLL 177
+ +++N E+ KSG + + +++EGLM + P + F L
Sbjct: 148 VSCLLEINVVGELSKSGFSSKALYECLDELMSMEHIHIEGLMNMAPRNDPDTARRSFVGL 207
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ + L+ LS GM+ DFE+A+ G+T +R+G +F
Sbjct: 208 YELHEALRAQTGLELSTLSCGMSDDFEIALEEGSTLIRLGRIVF 251
>gi|229815118|ref|ZP_04445455.1| hypothetical protein COLINT_02160 [Collinsella intestinalis DSM
13280]
gi|229809348|gb|EEP45113.1| hypothetical protein COLINT_02160 [Collinsella intestinalis DSM
13280]
Length = 245
Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats.
Identities = 61/232 (26%), Positives = 113/232 (48%), Gaps = 17/232 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ Q+++ S + R +D LVAVSK V ++ A+ G +F EN+ QE
Sbjct: 9 IEDRRAEILQRVDASLAVGGRTRDEAELVAVSKTVGLMQVLAAIDAGYRVFGENRPQELH 68
Query: 63 KKWIPL---RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ--- 116
+K L ++ V+ IG+LQ+NK++ ++ ++I ++ A +S +++
Sbjct: 69 RKLEGLELVQETRPVRFDMIGNLQTNKINAVLGRVELIHSIGTMHLAEAVSNRALRRLDA 128
Query: 117 ---SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG--NPK 171
+ V I+VN E K G P++ + + + + +EGLM + P +
Sbjct: 129 GELAAPQRVLIEVNVSGEETKGGFSPDELRRSMDGLQNLCGIRIEGLMTMAPRGDKSRAR 188
Query: 172 PHFYLLSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
F L E+ E + L +LS GM+ D+E+A+ G+T VR+G +F
Sbjct: 189 ECFAGLRELRDELRVSSGLELRELSCGMSEDYEIALEEGSTIVRLGRVVFDP 240
>gi|328957130|ref|YP_004374516.1| hypothetical protein CAR_c08060 [Carnobacterium sp. 17-4]
gi|328673454|gb|AEB29500.1| hypothetical protein CAR_c08060 [Carnobacterium sp. 17-4]
Length = 224
Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats.
Identities = 59/225 (26%), Positives = 109/225 (48%), Gaps = 15/225 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ Q ++K+ S R + SV ++AV+K V S++ + G AEN+ +
Sbjct: 3 SVKENCQEIERKLGLSLKKVNRERSSVQVIAVTKSVSSEQAIAVIEEGYTHLAENRPEGL 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K L + + +IG+LQ+ KV ++++ D + R A + K+ +
Sbjct: 63 EAKLEEL-NDLQLVWHYIGNLQTRKVKKVINKIDYFHALDRLALAEEIEKRAQKR---IS 118
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
++QVN E+ KSG+ P++ +F+ + ++ V GLM + P + F L
Sbjct: 119 CFVQVNVTGEVSKSGVSPDELDEFISNLSKYSKIKVVGLMTMAPLNAEETVVRTAFAHLR 178
Query: 179 EIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + T+LSMGM++D+ +A GAT +RIG+ F
Sbjct: 179 GLQQTIQEKSFSHAPCTELSMGMSKDYTIAAEEGATFIRIGTSFF 223
>gi|314978481|gb|EFT22575.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL072PA2]
gi|315088867|gb|EFT60843.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL072PA1]
Length = 198
Score = 207 bits (528), Expect = 8e-52, Method: Composition-based stats.
Identities = 64/195 (32%), Positives = 95/195 (48%), Gaps = 13/195 (6%)
Query: 41 KIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIET 99
+ A G +F ENK+Q+A K + ++ IG LQ+NK + +
Sbjct: 1 MVDEAYRAGYRLFGENKVQDALAKSELMDANHPGLEWSIIGGLQTNKAKYVARFATEFQA 60
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ K A L + K+ R L V +QVN+ E QKSGI P + DF L+V G
Sbjct: 61 LDSLKIAHELDKRLQKEGRQLRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFNSLDVRG 120
Query: 160 LMCIPPAMGNPK---PHFYLL----SEIARECK----LTKLSMGMTRDFELAIASGATSV 208
LM + + + F L+ ++ +E ++LSMGM+ D E+AIA G+T V
Sbjct: 121 LMTVALNSSDQRAVADCFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQV 180
Query: 209 RIGSGIFGER-PCQT 222
RIG+ IFG R P +T
Sbjct: 181 RIGTDIFGARDPART 195
>gi|323310167|gb|EGA63359.1| YBL036C-like protein [Saccharomyces cerevisiae FostersO]
Length = 231
Score = 207 bits (528), Expect = 9e-52, Method: Composition-based stats.
Identities = 66/218 (30%), Positives = 95/218 (43%), Gaps = 22/218 (10%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
+ L+ VSK+ + I++ G F EN +QE +K L D++ FIG LQ
Sbjct: 12 NASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPD--DIKWHFIGGLQ 69
Query: 84 SNKVSEI--VSLFDVIETVSREKTASLLSLEMIK---QSRFLPVYIQVNTGYEIQKSGIM 138
+NK ++ V +ET+ K A L+ K + +Q+NT E QKSG+
Sbjct: 70 TNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSXEDQKSGLN 129
Query: 139 PN----QTKDFVILCRQKYQLNVEGLMCIPP-----AMGNPKPHFYLLSEIARECKLT-- 187
+ DF L + + + GLM I F L E ++
Sbjct: 130 NEAEIFEVIDFF-LSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFG 188
Query: 188 ---KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
KLSMGM+ DF AI G VRIG+ IFG RP +
Sbjct: 189 TSLKLSMGMSADFREAIRQGTAEVRIGTDIFGARPPKN 226
>gi|320592368|gb|EFX04807.1| alanine racemase family [Grosmannia clavigera kw1407]
Length = 287
Score = 207 bits (528), Expect = 9e-52, Method: Composition-based stats.
Identities = 78/269 (28%), Positives = 105/269 (39%), Gaps = 56/269 (20%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS--CGQVIFAENKLQE 60
L +Q +++I +A A RP V LVAVSK+ + I QV F EN QE
Sbjct: 20 LAANIQAVQERIAAAA--AGRP---VRLVAVSKLKPANDIVALHEGPAKQVHFGENYAQE 74
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMIKQSR 118
+ K + L + +Q FIG LQS + + ++ K A LL R
Sbjct: 75 LRDKAVLLPR--SIQWHFIGGLQSGHCKGLARIPNLWCVSSIDSAKKAKLLEAARAAFVR 132
Query: 119 ---------------FLPVYIQVNTGYEIQKSGIMP-NQTKDFVILC-RQKYQLNVEGLM 161
+ V++QVNT E KSG P + T + L + GLM
Sbjct: 133 EQQTLSSSSSSSVLPPIHVHVQVNTSGEESKSGCAPGDDTVALCRTIVDECPHLRLLGLM 192
Query: 162 CIPP------------AMGNPKPHFYLLSEIARECKLT----------------KLSMGM 193
I A G P F L E + +LSMGM
Sbjct: 193 TIGAIARSRATDADAAAAGIENPDFVALREQRDLVQAALPMSTSTTDQPAAGPLELSMGM 252
Query: 194 TRDFELAIASGATSVRIGSGIFGERPCQT 222
+ DF AI SG+ VR+GS IFG RP +
Sbjct: 253 SDDFVGAITSGSGEVRVGSTIFGLRPPKA 281
>gi|323306047|gb|EGA59781.1| YBL036C-like protein [Saccharomyces cerevisiae FostersB]
Length = 231
Score = 207 bits (528), Expect = 9e-52, Method: Composition-based stats.
Identities = 66/218 (30%), Positives = 96/218 (44%), Gaps = 22/218 (10%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
+ L+ VSK+ + I++ G F EN +QE +K L D++ FIG LQ
Sbjct: 12 NASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPD--DIKWHFIGGLQ 69
Query: 84 SNKVSEI--VSLFDVIETVSREKTASLLSLEMIK---QSRFLPVYIQVNTGYEIQKSGIM 138
+NK ++ V +ET+ K A L+ K + +Q+NT +E QKSG+
Sbjct: 70 TNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLN 129
Query: 139 PN----QTKDFVILCRQKYQLNVEGLMCIPP-----AMGNPKPHFYLLSEIARECKLT-- 187
+ DF L + + + GLM I F L E ++
Sbjct: 130 NEAEIFEVIDFF-LSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFG 188
Query: 188 ---KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
KLSMGM+ DF AI G VRIG+ IFG RP +
Sbjct: 189 TSLKLSMGMSADFREAIRQGTAEVRIGTDIFGARPPKN 226
>gi|172040880|ref|YP_001800594.1| hypothetical protein cur_1200 [Corynebacterium urealyticum DSM
7109]
gi|171852184|emb|CAQ05160.1| conserved hypothetical protein [Corynebacterium urealyticum DSM
7109]
Length = 236
Score = 207 bits (528), Expect = 9e-52, Method: Composition-based stats.
Identities = 57/230 (24%), Positives = 96/230 (41%), Gaps = 21/230 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ +Q+I + L+ ++K + I + + G EN+ QEAK
Sbjct: 17 LAENLRAVRQRIAVA--------GGADLLPITKFHPVEDIELLRAGGIHAVGENREQEAK 68
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL------EMIKQ 116
+K L V++ +G +Q+NK + + + T E+ + L E +
Sbjct: 69 RKATELAG--SVEIHMVGQIQTNKANSVARWAAAVHTADSERLITALERGAGLALERGDR 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ LPV +Q + + Q+ G +Q L L + GLM +PP +P F
Sbjct: 127 AEKLPVLVQFSADGDPQRGGAPEDQIDQLADLVAGSEHLELRGLMTVPPLGSDPAEVFAR 186
Query: 177 LSEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ S GM+ D E+AI G+T VR+G+ I G RP +
Sbjct: 187 GRTLLDGISDRVLGAPVYSAGMSHDLEIAIGEGSTLVRVGTDIMGSRPVR 236
>gi|145223580|ref|YP_001134258.1| alanine racemase domain-containing protein [Mycobacterium gilvum
PYR-GCK]
gi|145216066|gb|ABP45470.1| alanine racemase domain protein [Mycobacterium gilvum PYR-GCK]
Length = 279
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 55/237 (23%), Positives = 96/237 (40%), Gaps = 20/237 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + ++ +A A R + L+ V K + + G FAE++ QEA
Sbjct: 9 LRAALDALRVRLARAAESAGRDVAEIELLPVIKFFPASDVLALYRLGCDAFAESRDQEAT 68
Query: 63 KKWIPL------RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM--- 113
K + R++ ++ +G +Q NK + +V K + L
Sbjct: 69 AKIEDVARVVGSREDTPIRWHMVGRIQRNKARSVAEWAYAAHSVDSVKVVAALERSASTA 128
Query: 114 ---IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY---QLNVEGLMCIPPAM 167
+++ L V+ Q++ + + G+ + T+ LC L G+M IPP
Sbjct: 129 LEEGRRTEPLRVFAQLSLDGDEARGGVDVDATERVDELCAAMDRAGGLTFAGMMAIPPLG 188
Query: 168 GNPKPHFYLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+P F L + + LS GM+ D E A+ G+T VR+G+ + G RP
Sbjct: 189 ADPGEAFARLRQERDRVQRDYEQRLGLSAGMSGDLEAAVRHGSTCVRVGTALMGSRP 245
>gi|256832921|ref|YP_003161648.1| alanine racemase domain-containing protein [Jonesia denitrificans
DSM 20603]
gi|256686452|gb|ACV09345.1| alanine racemase domain protein [Jonesia denitrificans DSM 20603]
Length = 253
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 59/240 (24%), Positives = 98/240 (40%), Gaps = 30/240 (12%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVI-------------F 53
L +I+N+A A R ++L+ +K + I A+
Sbjct: 14 LTTVSTRIDNAAHTAHRNPADITLLLATKTQPTPTITDAIHT-YRHLVTTQQITNRPLAI 72
Query: 54 AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE----IVSLFD-VIETVSREKTASL 108
EN++QE K L + IG LQSNK++ + D +++VS + A+
Sbjct: 73 GENRVQELSNKAADLSS-LRLSAHLIGPLQSNKINHTLTALAHHADAWVDSVSTPQLATK 131
Query: 109 LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG 168
L+ + L V IQ+N + G P+ L + G M I P
Sbjct: 132 LNDRWS-HTHPLNVLIQINVSGAPTQHGCPPSDALTLANHIHTLPHLQLRGFMAIGPRTT 190
Query: 169 NP---KPHFYLLSEIAREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + ++ ++ I T LSMGM+ D ++A+ GAT VR+G+ +FG RP
Sbjct: 191 DQTLLRDSYHSVAAIRDAALAEGHKHATHLSMGMSNDLDIAVECGATIVRVGTAVFGARP 250
>gi|123455783|ref|XP_001315632.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121898315|gb|EAY03409.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 227
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 70/228 (30%), Positives = 106/228 (46%), Gaps = 24/228 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + ++N + A LV VSK + ++ G IF EN + E
Sbjct: 6 VAENYKHINEIVKNLSSTAH-------LVCVSKTKPIEDLKQVFEAGGRIFGENYVDEII 58
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K L D Q IG LQSNKV+++ V +I+++ ++ A+ + + + + + L
Sbjct: 59 TKGPQLP---DAQFHMIGHLQSNKVAKLCKVENLVMIQSIDSKELATKVDKQYVNR-KPL 114
Query: 121 PVYIQVNTGYEIQKSGIMP-NQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKPHFYLL- 177
V IQ+NT E QKSGI + + + L G+M I G F L
Sbjct: 115 EVLIQINTSAEPQKSGIANGAEASELAKFIVENCHNLKFRGVMTIG-ETGEASRDFACLV 173
Query: 178 ---SEIARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
IA E + +LSMGM+ D+ELA+ GAT VR+GS IFG R
Sbjct: 174 EERRRIAGELGMKPEDLELSMGMSADYELALKMGATFVRVGSSIFGPR 221
>gi|149194613|ref|ZP_01871709.1| hypothetical protein CMTB2_01179 [Caminibacter mediatlanticus TB-2]
gi|149135357|gb|EDM23837.1| hypothetical protein CMTB2_01179 [Caminibacter mediatlanticus TB-2]
Length = 222
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 58/221 (26%), Positives = 114/221 (51%), Gaps = 16/221 (7%)
Query: 7 LQVFKQKIENSAILAKRPKD-SVSLVAVSK-MVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L Q++E + + R + V +VAV+K D + ++ GQ F EN++Q+ ++K
Sbjct: 3 LDELIQRVEVARLR--RSEHLIVQIVAVTKYTNDLEVLKRLYEDGQRAFGENRVQDMEEK 60
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD-VIETVSREKTASLLSLEMIKQSRFLPVY 123
L E ++ FIG+LQ NK+++++ L +I++++ + A ++ ++ +
Sbjct: 61 VNGL-SELPIEWHFIGNLQKNKINKLLKLNPFMIQSINSYELAQAINKRA---NKPIRCL 116
Query: 124 IQVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSE 179
+++N+ E K G+ P + D ++ + +N++G+M I + + F L E
Sbjct: 117 LEINSSKEPTKHGLEPEKAIDTYLQIKESLPNINLQGVMTIGAHTDDEREIRKSFRLTYE 176
Query: 180 IARECKL---TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
I + KL SMGM+ DFE+AI G+ +R+GS +
Sbjct: 177 IFDKLKLYGAKICSMGMSGDFEIAIEEGSNMIRVGSALLNS 217
>gi|323334742|gb|EGA76115.1| YBL036C-like protein [Saccharomyces cerevisiae AWRI796]
Length = 231
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 66/218 (30%), Positives = 95/218 (43%), Gaps = 22/218 (10%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
+ L+ VSK+ + I++ G F EN +QE +K L D++ FIG LQ
Sbjct: 12 NASKILLLVVSKLKPASDIQILYDHGVREFGENYVQELIEKAKLLPD--DIKWHFIGGLQ 69
Query: 84 SNKVSEI--VSLFDVIETVSREKTASLLSLEMIK---QSRFLPVYIQVNTGYEIQKSGIM 138
+NK ++ V +ET+ K A L+ K + +Q+NT E QKSG+
Sbjct: 70 TNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSREDQKSGLN 129
Query: 139 PN----QTKDFVILCRQKYQLNVEGLMCIPP-----AMGNPKPHFYLLSEIARECKLT-- 187
+ DF L + + + GLM I F L E ++
Sbjct: 130 NEAEIFEVIDFF-LSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFG 188
Query: 188 ---KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
KLSMGM+ DF AI G VRIG+ IFG RP +
Sbjct: 189 TSLKLSMGMSADFREAIRQGTAEVRIGTDIFGARPPKN 226
>gi|224437555|ref|ZP_03658513.1| hypothetical protein HcinC1_06300 [Helicobacter cinaedi CCUG 18818]
Length = 225
Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 74/223 (33%), Positives = 111/223 (49%), Gaps = 12/223 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ ++IE + LA +SLVAVSK + IR CGQ F ENK+Q+ +
Sbjct: 2 LALQLERILRRIERA-RLAYNAHQIISLVAVSKYQNVDSIRALYECGQRAFGENKVQDLR 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD-VIETVSREKTASLLSLEMIKQSRFLP 121
K L + ++ FIG LQ NK++ +++L +I +V KTA + +
Sbjct: 61 LKAQIL-DDVPLEWHFIGKLQENKINALLALKPSLIHSVDSLKTAQAIQKRLQTLLGEAK 119
Query: 122 V--YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIP---PAMGNPKPHFY 175
V +Q+N EI KSG+ ++ + + +EG+MCI P + F
Sbjct: 120 VRALLQINAADEISKSGVSVESAREVYDEILKTCPNIIMEGVMCIGANSPNRKEIEQSFQ 179
Query: 176 LLSEIARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
S+I + LSMGM+ DFE+AIA GA VRIGS +F
Sbjct: 180 KTSDIFHSLQDKGAKILSMGMSGDFEIAIAYGANLVRIGSKLF 222
>gi|314988183|gb|EFT32274.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL005PA2]
gi|314989986|gb|EFT34077.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL005PA3]
gi|315084372|gb|EFT56348.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL027PA2]
gi|328753527|gb|EGF67143.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL020PA1]
Length = 198
Score = 206 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 64/195 (32%), Positives = 94/195 (48%), Gaps = 13/195 (6%)
Query: 41 KIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIET 99
+ A G +F ENK+Q A K + ++ IG LQ+NK + +
Sbjct: 1 MVDEAYRAGYRLFGENKVQHALAKSELMDANHPGLEWSIIGGLQTNKAKYVARFATEFQA 60
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ K A L + K+ R L V +QVN+ E QKSGI P + DF L+V G
Sbjct: 61 LDSLKIAHELDKRLQKEGRQLRVLVQVNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRG 120
Query: 160 LMCIPPAMGNPK---PHFYLL----SEIARECK----LTKLSMGMTRDFELAIASGATSV 208
LM + + + F L+ ++ +E ++LSMGM+ D E+AIA G+T V
Sbjct: 121 LMTVALNSSDQRAVADCFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQV 180
Query: 209 RIGSGIFGER-PCQT 222
RIG+ IFG R P +T
Sbjct: 181 RIGTDIFGARDPART 195
>gi|145248690|ref|XP_001400684.1| alanine racemase family protein [Aspergillus niger CBS 513.88]
gi|134081351|emb|CAK41854.1| unnamed protein product [Aspergillus niger]
Length = 271
Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 75/244 (30%), Positives = 106/244 (43%), Gaps = 37/244 (15%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS---CGQVIFAENKLQEAKKKWIPL 68
+I N+A + LVAVSK+ + I + Q F EN LQE ++K L
Sbjct: 25 ARI-NTATTSSPKSTPPRLVAVSKLKPASDILTLHTNPPAHQTHFGENYLQELQEKARLL 83
Query: 69 RKEWDVQLRFIGSLQSNKVSEIV---SLFDVIETVSREKTASLLSLEMIKQS-------- 117
++ FIG LQSNK + +E+V K ASLL ++S
Sbjct: 84 PTT--IKWHFIGGLQSNKCVTLARDTPALWAVESVDSTKKASLLDKGWGERSAEVKETNH 141
Query: 118 -RFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCR-QKYQLNVEGLMCIPPAM------- 167
L V++QVNT E KSG+ P + R + +L ++G+M I
Sbjct: 142 EERLRVFVQVNTSGEENKSGVEPGDGALELCRFIRDKCPRLRLQGVMTIGAIARSKATTP 201
Query: 168 GNPKPHFYLLSEIAREC----------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
N F L E +LSMGM+ DFE AIA G+ VR+G+ IFG+
Sbjct: 202 ENENEDFVCLRETRDRVVKELGLLGEEAALELSMGMSEDFEGAIALGSDEVRVGTTIFGD 261
Query: 218 RPCQ 221
RP +
Sbjct: 262 RPPK 265
>gi|158316849|ref|YP_001509357.1| PLP-binding domain-containing protein [Frankia sp. EAN1pec]
gi|158112254|gb|ABW14451.1| putative enzyme with PLP-binding domain [Frankia sp. EAN1pec]
Length = 319
Score = 206 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 69/300 (23%), Positives = 103/300 (34%), Gaps = 84/300 (28%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L V + +I +A A R ++L+AVSK ++ + ++ G FAEN+ QEA
Sbjct: 16 LRERLTVVRDRITVAARDAGRDPAELTLIAVSKTRPAEDVLALVALGVRHFAENREQEAG 75
Query: 63 KKWIPLR--------------------------------------------------KEW 72
K +R
Sbjct: 76 PKTEAVRLALAAAAAGGSDEHTMWSDDDRFRESSPLADTSGAWRPSRVDQGPTLGPAAGP 135
Query: 73 DVQ-LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
DV F+G LQ NK + +++V R + LS + R + V IQVN
Sbjct: 136 DVPVWHFVGQLQRNKARAVAGWVHCVQSVDRARLVEALSRAATARGRQISVCIQVNLDIA 195
Query: 132 IQKSG----------------------------IMPNQTKDFVILCRQKYQLNVEGLMCI 163
+P L L + G+M +
Sbjct: 196 EPVGAPGAPAARNALSTRENEPTAGAADGARGGALPADVPALAELVAGSEGLVLTGVMAV 255
Query: 164 PPAMGNPKPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L E+A T +S GM+ D E A+A GAT +RIG+ +FGER
Sbjct: 256 APRGAPARPAFARLREVADRLLSEHPAATLVSAGMSGDLEDAVAEGATHLRIGTALFGER 315
>gi|171689970|ref|XP_001909924.1| hypothetical protein [Podospora anserina S mat+]
gi|170944947|emb|CAP71058.1| unnamed protein product [Podospora anserina S mat+]
Length = 268
Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 79/249 (31%), Positives = 105/249 (42%), Gaps = 39/249 (15%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC---GQVIFAENKL 58
+L ++LQ K KI +A+ RP V LVAVSK+ + I + F EN
Sbjct: 16 ALISQLQGVKDKI--AAVAKGRP---VRLVAVSKLKPANDILALHEAPETKHLHFGENYS 70
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMIKQ 116
QE +K L + +Q FIG LQS + I ++ K A LL Q
Sbjct: 71 QELTQKAELLPRT--IQWHFIGGLQSKHTKNLAKIPNLFCISSIDTLKKAELLDKYRGDQ 128
Query: 117 SR---------FLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCR-QKYQLNVEGLMCIPP 165
+ V++QVNT E KSG P +T + L + GLM I
Sbjct: 129 IAAATNPDIFGKIKVHVQVNTSGEESKSGCAPGQETVKLCKKIENECPNLELLGLMTIGA 188
Query: 166 AM-------GNPKPHFYLLSEIAR---------ECKLTKLSMGMTRDFELAIASGATSVR 209
N F +L E E +L +LSMGM+ DFE AIA G+ VR
Sbjct: 189 IARSRETTPENENEDFQVLREQRDLVRKELGLGEERLLELSMGMSEDFEGAIAMGSDEVR 248
Query: 210 IGSGIFGER 218
+GS IFG R
Sbjct: 249 VGSTIFGAR 257
>gi|29832668|ref|NP_827302.1| hypothetical protein SAV_6126 [Streptomyces avermitilis MA-4680]
gi|29609788|dbj|BAC73837.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 239
Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 65/230 (28%), Positives = 113/230 (49%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I + A R ++ V+L+ V+K + +R+ G AENK Q+A
Sbjct: 8 LAANLAKVEDRIAAACAAAGRGREEVTLIVVTKTYPAIDVRILSELGVRDVAENKDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + ++ F+G LQ+NKV +V DV+++V R K + LS E ++ R +
Sbjct: 68 PKAAE-CSDLPLKWHFVGQLQTNKVRSVVGYADVVQSVDRPKLVTALSKEAVRAGREVGC 126
Query: 123 YIQVNTGYEI----QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPHF 174
IQV + ++ G+ P ++ L + L ++GLM + P G + F
Sbjct: 127 LIQVALDAQEYGRGERGGVGPGGLEELGDLVAEAPGLRLDGLMTVAPLTGEYAGRQRAAF 186
Query: 175 YLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +++ + + +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 DRLMDLSTDLRRAHPAANMVSAGMSADLEEAVAAGATHVRVGTAVLGVRP 236
>gi|294659120|ref|XP_461459.2| DEHA2F25762p [Debaryomyces hansenii CBS767]
gi|202953632|emb|CAG89878.2| DEHA2F25762p [Debaryomyces hansenii]
Length = 249
Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 70/240 (29%), Positives = 107/240 (44%), Gaps = 23/240 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + +++ N + A+ V LVAVSK+ S I + G F EN +QE
Sbjct: 14 EISSAYDKISEQVSN--LSAEHSSKPVRLVAVSKLKPSSDIMALYNHGVRHFGENYVQEL 71
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLL-SLEMIKQS 117
K L K D++ FIG LQ+ K ++ V +E + K L S +
Sbjct: 72 IGKSQELPK--DIKWHFIGGLQTGKCKDLSKGVENLYAVEAIDSLKKCKKLESCRKNAEG 129
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR------QKYQLNVEGLMCIPPAMGNP- 170
+ +Y+Q+NT E QKSG + Q LN++GLM I +
Sbjct: 130 NSINIYLQINTSGEDQKSGYSLEVLDELYETVEFLLDPKQCTLLNIQGLMTIGSFSESIS 189
Query: 171 ---KPHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
F L + ++ +LSMGM+ DF+ AI G++SVR+GS IFG RP ++
Sbjct: 190 EEGNADFKRLLTLKQKLDDKYRLDLELSMGMSNDFKEAIKQGSSSVRVGSSIFGARPTKS 249
>gi|262202905|ref|YP_003274113.1| alanine racemase domain-containing protein [Gordonia bronchialis
DSM 43247]
gi|262086252|gb|ACY22220.1| alanine racemase domain protein [Gordonia bronchialis DSM 43247]
Length = 259
Score = 206 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 60/232 (25%), Positives = 106/232 (45%), Gaps = 15/232 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L +L+ +++++ + A RP +V L+ V+K + +R + G F E++ EA
Sbjct: 24 LAARLRAVRERLDAAVAAAHRPAGAVELLVVTKFFPADDVRRLIGLGVRTFGESREPEAG 83
Query: 63 KKWIPLRKEWDV----QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASL------LSLE 112
+K +R ++ IG++Q+ K + + +V R K A +L+
Sbjct: 84 RKIAEVRAGGEITPPPTFDMIGTVQTKKAGGVARWARAVHSVDRRKLAERLADAAQAALD 143
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
+ L V +QV+ + + G++ D L++ GLM I P G
Sbjct: 144 AGDRDDPLGVLLQVSLDGDPHRGGLLEADLADVADAVAGSPALSLRGLMAIAPLAGERAH 203
Query: 173 HFYLLSEIARE-----CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L+ I + T+LS GM+ D E+A+A G+T VR+G+ I GERP
Sbjct: 204 WMAELARIHADFTRSHPDATELSAGMSGDLEIAVAHGSTCVRVGTAILGERP 255
>gi|227833486|ref|YP_002835193.1| hypothetical protein cauri_1662 [Corynebacterium aurimucosum ATCC
700975]
gi|262184474|ref|ZP_06043895.1| hypothetical protein CaurA7_10813 [Corynebacterium aurimucosum ATCC
700975]
gi|227454502|gb|ACP33255.1| hypothetical protein cauri_1662 [Corynebacterium aurimucosum ATCC
700975]
Length = 236
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 66/228 (28%), Positives = 102/228 (44%), Gaps = 16/228 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ + I+ A A+RP L+ V+K ++ I + G AEN+ QEA+
Sbjct: 12 LRAGLERTRADIQRFAEAARRPA--PQLLPVTKFHPAEDIALLAELGITDVAENREQEAR 69
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS------LLSLEMIKQ 116
K L + ++ IG +Q+ K + + + ++ EK A L+ E ++
Sbjct: 70 AKAEALPE---MRFHMIGQVQTKKANHVARWAHSVHSLDSEKLARGLDRGVALAQERGQR 126
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
LPVYIQV+ + + G V + L + G M +PP P F
Sbjct: 127 QDSLPVYIQVSADGDTARGGCPLEDVPALVEVVDDLENLQLCGFMVVPPLESEPAEVFAQ 186
Query: 177 LSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + E K+S GM+ D E AIASG VR+G+GI GERP
Sbjct: 187 VRALTDEAAAKLGRDLKMSAGMSADMEAAIASGTDIVRVGTGIMGERP 234
>gi|225682299|gb|EEH20583.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
gi|226289680|gb|EEH45164.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 302
Score = 206 bits (524), Expect = 2e-51, Method: Composition-based stats.
Identities = 83/274 (30%), Positives = 119/274 (43%), Gaps = 56/274 (20%)
Query: 2 SLGNKLQVFKQKIENSAILAK--------RPKDS--VSLVAVSKMVDSKKIRVALSCG-Q 50
+L L +I +++ A RP+ V LVAVSK+ + I++ S
Sbjct: 25 TLLANLSAVTARIASASAAANTSRTKTQSRPQTQRPVRLVAVSKLKPASDIQILHSHDPS 84
Query: 51 VIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF---DVIETVSREKTAS 107
+ F EN LQE +K L ++ FIG LQSNK + +E+V EK AS
Sbjct: 85 LHFGENYLQELLEKSKILP--CGIRWHFIGGLQSNKCVTLARDVRGLWAVESVDTEKKAS 142
Query: 108 LLSLEMIKQ-----------------SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
LL ++ L V++QVNT E KSG+ P + R
Sbjct: 143 LLDRGWGERDVDVNEEGGEKGQSVNAGNRLRVFVQVNTSGEESKSGVKPAEAVSLCRFIR 202
Query: 151 Q-KYQLNVEGLMCI-------PPAMGNPKPHFYLLSE----IARECKL-----------T 187
+ +L ++GLM I + N F L E + +E +L
Sbjct: 203 EKCPRLKLQGLMTIGAIARSKATTVENENEDFVCLRETRDMVEKELELVADEGEGEAEGL 262
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+LSMGM+ DFE AIA G+ VR+GS IFG RP +
Sbjct: 263 ELSMGMSEDFEGAIAMGSNQVRVGSTIFGVRPPK 296
>gi|313144009|ref|ZP_07806202.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
gi|313129040|gb|EFR46657.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
Length = 222
Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats.
Identities = 73/220 (33%), Positives = 109/220 (49%), Gaps = 12/220 (5%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L+ ++IE + LA +SLVAVSK + IR CGQ F ENK+Q+ + K
Sbjct: 2 QLERILRRIERA-RLAYNAHQIISLVAVSKYQNVDSIRALYECGQRAFGENKVQDLRLKA 60
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFD-VIETVSREKTASLLSLEMIKQSRFLPV-- 122
L + ++ FIG LQ NK++ +++L +I +V KTA + + V
Sbjct: 61 QIL-DDVPLEWHFIGKLQENKINALLALKPSLIHSVDSLKTAQAIQKRLQTLLGEAKVRA 119
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIP---PAMGNPKPHFYLLS 178
+Q+N EI KSG+ ++ + + +EG+MCI P + F S
Sbjct: 120 LLQINAADEISKSGVSVESAREVYDEILKTCPNIIMEGVMCIGANSPNRKEIEQSFQKTS 179
Query: 179 EIAREC---KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+I LSMGM+ DFE+AIA GA VRIGS +F
Sbjct: 180 DIFHSLQDKGAKILSMGMSGDFEIAIAYGANLVRIGSKLF 219
>gi|288904815|ref|YP_003430037.1| hypothetical protein GALLO_0604 [Streptococcus gallolyticus UCN34]
gi|306830847|ref|ZP_07464009.1| YggS family pyridoxal phosphate enzyme [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|288731541|emb|CBI13096.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
gi|304426870|gb|EFM29980.1| YggS family pyridoxal phosphate enzyme [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
Length = 224
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 15/205 (7%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81
R K+SV+++AV+K VDS + G EN++ K+ L+ ++ IGS
Sbjct: 23 NRSKESVNVIAVTKYVDSGVAARLIDTGIEHIGENRVDMFLDKYEALKDR-NLTWHLIGS 81
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQ KV +++ D + K AS + + ++QVN E K G ++
Sbjct: 82 LQRRKVKNVINFVDYFHALDSVKLASEIQKRAE---HTIKCFLQVNISEEESKHGFKVSE 138
Query: 142 TKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECK--------LTKLS 190
+ + + ++ + GLM + P + + F +++ +E + T+LS
Sbjct: 139 IDEALAAISEFDKVEIVGLMTMAPKEASESEIEEIFGKANQLRQELQARQLPHMPFTELS 198
Query: 191 MGMTRDFELAIASGATSVRIGSGIF 215
MGM+ D+++AI +GAT VRIG+ F
Sbjct: 199 MGMSGDYKIAIRNGATFVRIGTSFF 223
>gi|314981156|gb|EFT25250.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL110PA3]
gi|315091979|gb|EFT63955.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL110PA4]
Length = 198
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 63/195 (32%), Positives = 96/195 (49%), Gaps = 13/195 (6%)
Query: 41 KIRVALSCGQVIFAENKLQEAKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIET 99
+ A G +F ENK+Q+A K + + ++ IG LQ+NK + +
Sbjct: 1 MVDEAYRAGYRLFGENKVQDALAKSELMDDDHPGLEWSIIGGLQTNKAKYVARFATEFQA 60
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ K A L + K+ R L V +Q+N+ E QKSGI P + DF L+V G
Sbjct: 61 LDSLKIAHELDKRLQKEGRQLRVLVQMNSSAEPQKSGIAPEEAVDFARELAAFDSLDVRG 120
Query: 160 LMCIPPAMGNPK---PHFYLL----SEIARECK----LTKLSMGMTRDFELAIASGATSV 208
LM + + + F L+ ++ +E ++LSMGM+ D E+AIA G+T V
Sbjct: 121 LMTVALNSSDQRAVADCFDLVVATQEKLRQEAGDTSDWSELSMGMSGDLEIAIAHGSTQV 180
Query: 209 RIGSGIFGER-PCQT 222
RIG+ IFG R P +T
Sbjct: 181 RIGTDIFGTRDPVRT 195
>gi|322699267|gb|EFY91030.1| alanine racemase family protein (ISS) [Metarhizium acridum CQMa
102]
Length = 287
Score = 205 bits (523), Expect = 3e-51, Method: Composition-based stats.
Identities = 79/270 (29%), Positives = 104/270 (38%), Gaps = 53/270 (19%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKD----------------------SVSLVAVSKMVDS 39
+L ++L K++I A+ R V LVAVSK+
Sbjct: 16 ALISQLSSVKERIG--ALANGRDASRRGPPQHTSSTANGTTPSANTPQVRLVAVSKLKPV 73
Query: 40 KKIRVALSC--GQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV--SLFD 95
I F EN QE +K L K VQ FIG LQS +
Sbjct: 74 NDILALHQAPASHRHFGENYTQELTQKAQLLPKT--VQWHFIGGLQSGHCKTLAKIPNLF 131
Query: 96 VIETVSREKTASLLSLEMIKQS------RFLPVYIQVNTGYEIQKSGIMPN-QTKDFVIL 148
+ +V K A+LL+ L V++QVNT E KSG P +T
Sbjct: 132 CVSSVDTLKKANLLNTARGALLASDPSLPKLSVHVQVNTSGEEAKSGCAPGKETVALCRE 191
Query: 149 C-RQKYQLNVEGLMCI-------PPAMGNPKPHFYLLSE----IARECKLT----KLSMG 192
L++ GLM I N F L E +ARE L +LSMG
Sbjct: 192 IIGNCPNLHLLGLMTIGAIARSKATTAENENEDFIALKEQRDLVARELALDHGRLELSMG 251
Query: 193 MTRDFELAIASGATSVRIGSGIFGERPCQT 222
M+ DFE A+ G+ VR+GS IFG RP +
Sbjct: 252 MSEDFEGAVVLGSGEVRVGSTIFGTRPAKA 281
>gi|319936620|ref|ZP_08011033.1| hypothetical protein HMPREF9488_01866 [Coprobacillus sp. 29_1]
gi|319808177|gb|EFW04742.1| hypothetical protein HMPREF9488_01866 [Coprobacillus sp. 29_1]
Length = 217
Score = 205 bits (523), Expect = 4e-51, Method: Composition-based stats.
Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 11/196 (5%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
+LVA +K +D K+I CG + EN++Q +K+ + FIG+LQ+NKV
Sbjct: 19 TLVAATKYIDEKEIEELEKCGCFYYGENRVQAFLEKYEKYHGKG--HWHFIGTLQTNKVK 76
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
I+ D+I +V+ L + K+ + + +QVN E K G + + ++
Sbjct: 77 YIIDKVDLIHSVNSYSLIDELEKQASKRDIKIHILLQVNIANENSKHGFTIEEMNNVMVY 136
Query: 149 CRQKYQLNVEGLMCIPPA--MGNPKPHFYLLSEIARECK-------LTKLSMGMTRDFEL 199
++ L V+GLM + P +P+F E+ + K L +LSMGM+ D+ +
Sbjct: 137 IQKCSALIVDGLMMMAPHIEAEQTRPYFQQTHELLHKLKRDFPHHPLKELSMGMSEDYHI 196
Query: 200 AIASGATSVRIGSGIF 215
A+ GAT VRIG +F
Sbjct: 197 ALEEGATFVRIGRALF 212
>gi|210634169|ref|ZP_03298031.1| hypothetical protein COLSTE_01953 [Collinsella stercoris DSM 13279]
gi|210158916|gb|EEA89887.1| hypothetical protein COLSTE_01953 [Collinsella stercoris DSM 13279]
Length = 254
Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats.
Identities = 59/232 (25%), Positives = 108/232 (46%), Gaps = 17/232 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + +++ + + R ++ +LVAVSK V ++ A+ G +F EN+ QE
Sbjct: 18 IAERREEILGRMDAALTASGRAREDATLVAVSKTVRVDEVVTAIDAGYRVFGENRPQELN 77
Query: 63 KKWIPL---RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS------LEM 113
+K L V+ IG+LQ+NK++ ++ +++ ++ A L+ LE
Sbjct: 78 RKLEGLSLRPDVPPVRFDMIGNLQTNKINAVLGRVELVHSIGSLHLARALAARAERWLEA 137
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM--GNPK 171
+ + I+VN E K G P++ + + + +EGLM + P +
Sbjct: 138 GELVAPQSILIEVNVSGEETKGGFAPSELRAAFGELQSLCGVRIEGLMTMAPRGDKDRAR 197
Query: 172 PHFYLLSEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
F L E+ E L +LS GM+ DFE+A+ G+T VR+G +F
Sbjct: 198 ACFSGLRELRDELSRESGLPLRELSCGMSEDFEVALEEGSTIVRLGRVVFDP 249
>gi|152992349|ref|YP_001358070.1| hypothetical protein SUN_0755 [Sulfurovum sp. NBC37-1]
gi|151424210|dbj|BAF71713.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 227
Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats.
Identities = 58/221 (26%), Positives = 103/221 (46%), Gaps = 10/221 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L IE + I V LVAV K + + I GQ F EN++Q+ K
Sbjct: 8 LRANLDEVIWNIEEARISVS-EHHIVQLVAVGKYTEVENIVTLYKLGQRAFGENQVQQLK 66
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFLP 121
+ L +E ++ IG LQ NK++ ++ L +++++ A L+ ++ + +
Sbjct: 67 ARMAAL-EELPLEWHMIGRLQKNKINNLIDLRPSLMQSLDSLSLAEELNKKLDAKEAKMN 125
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNPK---PHFYLL 177
+Q+N+ E KSG+ P + +D + ++ + ++G+M I + K F
Sbjct: 126 CLLQINSAREETKSGVTPEEAQDIYLQIKESCPNITLKGVMTIGAHTDDTKLIQQSFETT 185
Query: 178 SEIAREC---KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
I + T SMGM+ D+ LAI G+ +R+GS +F
Sbjct: 186 QSIYEKLEKEGATVCSMGMSSDYALAIKCGSNLIRVGSALF 226
>gi|240168212|ref|ZP_04746871.1| hypothetical protein MkanA1_02797 [Mycobacterium kansasii ATCC
12478]
Length = 258
Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats.
Identities = 53/239 (22%), Positives = 94/239 (39%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 15 LTHALAAVRSRLAAAAEAAGRNVGEIELLPITKFFPATDVVILCRLGCRAVGESREQEAS 74
Query: 63 KKWIPLRKEW---------DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K + + + +G +Q NKV + +V + + L +
Sbjct: 75 AKAAEVARLLAAPPRAGLGGIHWHMVGRIQRNKVRSLARWAHTAHSVDSPRLVTALDRAV 134
Query: 114 ------IKQSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
++ R L VY+QV+ ++ + G+ P + L + GLM IP
Sbjct: 135 TAALAERRRDRPLRVYVQVSLDGDVSRGGVDITAPGAVDEICAQVDAAPGLELVGLMGIP 194
Query: 165 PAMGNPKPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L LS GM+ DFE A+ G+T VR+G+ + G R
Sbjct: 195 PLDWDPDEAFDRLQSEHNRVRESFPGAVGLSAGMSADFETAVKHGSTCVRVGTALLGPR 253
>gi|73748569|ref|YP_307808.1| hypothetical protein cbdb_A730 [Dehalococcoides sp. CBDB1]
gi|147669329|ref|YP_001214147.1| alanine racemase domain-containing protein [Dehalococcoides sp.
BAV1]
gi|289432595|ref|YP_003462468.1| alanine racemase domain protein [Dehalococcoides sp. GT]
gi|73660285|emb|CAI82892.1| conserved hypothetical protein [Dehalococcoides sp. CBDB1]
gi|146270277|gb|ABQ17269.1| alanine racemase domain protein [Dehalococcoides sp. BAV1]
gi|288946315|gb|ADC74012.1| alanine racemase domain protein [Dehalococcoides sp. GT]
Length = 220
Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats.
Identities = 72/229 (31%), Positives = 116/229 (50%), Gaps = 23/229 (10%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++ LA+ P D V + AV K ++ I A++ G I N L EA
Sbjct: 4 NIAQNVRDI---------LAELPPDVVLVAAVKKRQPAE-ILAAIAAGVKIIGHNYLSEA 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
++ + + + + FIG LQSNK +IV LF V+ETV + AS L+ + + +
Sbjct: 54 EETYPFIGDK--AEWHFIGKLQSNKCKKIVRLFSVVETVDSFEIASELNRRAAEIDKVMS 111
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
V+I++N+G E QKSG++P +T + L + GLM + PA+ +P+ F L
Sbjct: 112 VFIEINSGREKQKSGVLPEETVELAKRISGLSNLKLAGLMTMGPALEDPEELRTIFRLTK 171
Query: 179 EIAREC--------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E +L LSMGM+ +++A+ G VR+G+ IFG RP
Sbjct: 172 IKFDEIAVMGLPNTELKFLSMGMSVSYKVAVQEGTNLVRLGTRIFGNRP 220
>gi|296125213|ref|YP_003632465.1| alanine racemase domain protein [Brachyspira murdochii DSM 12563]
gi|296017029|gb|ADG70266.1| alanine racemase domain protein [Brachyspira murdochii DSM 12563]
Length = 231
Score = 204 bits (521), Expect = 5e-51, Method: Composition-based stats.
Identities = 68/225 (30%), Positives = 106/225 (47%), Gaps = 12/225 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVI-FAENKLQEA 61
+ + + + I D VSLVAVSK + I+ LS + E+K Q
Sbjct: 6 ILKRYNLIEDNINRIKEKYNINYD-VSLVAVSKYSSIETIKEFLSLNIDLPLGESKAQSL 64
Query: 62 KKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ + + K D V+ FIG +QSNKV IV D+I++V + A ++ E +K ++
Sbjct: 65 RDRVGEIGKIKDNVKWHFIGRIQSNKVKYIVKYADLIQSVDSIEIAECINKEALKNNKVQ 124
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+ +Q N E+QK G + + ++V+GLM I + + F L
Sbjct: 125 DILLQFNISDEVQKGGFTADDYIGVYENIMKMPNISVKGLMAIGKDTEDSYVIEEEFEHL 184
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ I +E L+ LSMGM+ D+ELAI G+ VRIGS G
Sbjct: 185 NLIYKEINKKYNNTLSILSMGMSSDYELAIKHGSNMVRIGSSFLG 229
>gi|325977745|ref|YP_004287461.1| putative pyridoxal phosphate-dependent enzyme [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|325177673|emb|CBZ47717.1| Predicted pyridoxal phosphate-dependent enzyme [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
Length = 224
Score = 204 bits (521), Expect = 6e-51, Method: Composition-based stats.
Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 15/205 (7%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81
R K+SV+++AV+K VDS + G EN++ K+ L+ + IGS
Sbjct: 23 NRSKESVNVIAVTKYVDSGVAARLIDTGIEHIGENRVDMFLDKYEALKDRK-LTWHLIGS 81
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
LQ KV +++ D + K AS + + ++QVN E K G ++
Sbjct: 82 LQRRKVKNVINFVDYFHALDSVKLASEIQKRAE---HTIKCFLQVNISEEESKHGFKVSE 138
Query: 142 TKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEIARECK--------LTKLS 190
+ + + ++ + GLM + P + + F +++ +E + T+LS
Sbjct: 139 IDEALAAISEFDKVEIVGLMTMAPKEASESEIEEIFGKANQLRQELQARQLPHMPFTELS 198
Query: 191 MGMTRDFELAIASGATSVRIGSGIF 215
MGM+ D+++AI +GAT VRIG+ F
Sbjct: 199 MGMSGDYKIAIRNGATFVRIGTSFF 223
>gi|224541076|ref|ZP_03681615.1| hypothetical protein CATMIT_00227 [Catenibacterium mitsuokai DSM
15897]
gi|224526000|gb|EEF95105.1| hypothetical protein CATMIT_00227 [Catenibacterium mitsuokai DSM
15897]
Length = 215
Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats.
Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 11/198 (5%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
LVA +K +D K++ CG +I+ ENK+Q+ KK+ + FIG+LQ+NKV
Sbjct: 20 KLVAATKYIDEKEVEKLEECGVMIYGENKVQDFLKKYEDYHGKG--VWHFIGTLQTNKVK 77
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
I+ +I +V+ + + + K + + +QVN E K G + + +
Sbjct: 78 YIIDKVQMIHSVANYRLIDEIEKQAAKHDLVMDILLQVNIAKEESKHGFNEEEMNEVMDY 137
Query: 149 CRQKYQLNVEGLMCIPPA--MGNPKPHFYLLSEIAREC-------KLTKLSMGMTRDFEL 199
+ K LN GLM + P + + +F ++ + +LT+LSMGMT DF +
Sbjct: 138 LKDKPHLNPRGLMMMAPNIEVEETRQYFKATKDLLTKLQESYPNYQLTELSMGMTHDFPI 197
Query: 200 AIASGATSVRIGSGIFGE 217
A+A G+T VR+G +F E
Sbjct: 198 AVAEGSTMVRLGHALFDE 215
>gi|323489504|ref|ZP_08094731.1| hypothetical protein GPDM_09165 [Planococcus donghaensis MPA1U2]
gi|323396635|gb|EGA89454.1| hypothetical protein GPDM_09165 [Planococcus donghaensis MPA1U2]
Length = 223
Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats.
Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
D++ ++AV+K V ++ + A+ G EN+ + KK + + +V +IG+LQ+
Sbjct: 20 DTIQIIAVTKQVGIERTKEAIQAGIHHLGENRPEGLSKKLEAI--DENVSWHYIGNLQTR 77
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV ++++ D + ++ R A + +R + ++QVN E KSGI P T +F
Sbjct: 78 KVKDVINEIDYLHSLDRLSLAKEIQKRA---TRPVNCFVQVNVSGEESKSGIEPEDTINF 134
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK--------LTKLSMGMT 194
+ + V GLM + P + + F L + + T+ SMGM+
Sbjct: 135 IESLEAYDNIKVVGLMTMAPNTSDESVIREAFKGLKSLQLQVSEKNWAHAPCTECSMGMS 194
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+ +A GA+ VRIG+ + G
Sbjct: 195 NDYLIAAQEGASFVRIGTALVGA 217
>gi|254775015|ref|ZP_05216531.1| hypothetical protein MaviaA2_10124 [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 261
Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats.
Identities = 53/240 (22%), Positives = 93/240 (38%), Gaps = 23/240 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + ++ V+K + + G E++ QEA
Sbjct: 18 LTHALAAVRSRLAAAAEAAGRNVAEIEVLPVTKFFPATDVVTLSRLGCRAVGESRDQEAT 77
Query: 63 KKWIPLRKEWDV---------QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K + + + +G +Q NK + +V S L +
Sbjct: 78 AKVAEVTRLLATSARTNVAIPRWHMVGHIQRNKARSVARWAHTAHSVDSTHLVSALDRGV 137
Query: 114 IK------QSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
++ + VY+QV+ + + G+ P + L++ GLM IP
Sbjct: 138 AAALADGGRTDPMRVYVQVSLDGDESRGGVDISRPGAVDEVCAQVAAANNLDLVGLMAIP 197
Query: 165 PAMGNPKPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P +P F L R LS GM+ DFE+A+ G+T VR+G+ + G RP
Sbjct: 198 PLNSDPDEAFDRLQSEHRRVLETHRNAVGLSAGMSDDFEIAVKHGSTCVRVGTALLGRRP 257
>gi|41407990|ref|NP_960826.1| hypothetical protein MAP1892c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41396344|gb|AAS04209.1| hypothetical protein MAP_1892c [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 264
Score = 204 bits (520), Expect = 7e-51, Method: Composition-based stats.
Identities = 53/240 (22%), Positives = 93/240 (38%), Gaps = 23/240 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + ++ V+K + + G E++ QEA
Sbjct: 21 LTHALAAVRSRLAAAAEAAGRNVAEIEVLPVTKFFPATDVVTLSRLGCRAVGESRDQEAT 80
Query: 63 KKWIPLRKEWDV---------QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K + + + +G +Q NK + +V S L +
Sbjct: 81 AKVAEVTRLLATSARTNVAIPRWHMVGHIQRNKARSVARWAHTAHSVDSTHLVSALDRGV 140
Query: 114 IK------QSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
++ + VY+QV+ + + G+ P + L++ GLM IP
Sbjct: 141 AAALADGGRTDPMRVYVQVSLDGDESRGGVDISRPGAVDEVCAQVAAANNLDLVGLMAIP 200
Query: 165 PAMGNPKPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P +P F L R LS GM+ DFE+A+ G+T VR+G+ + G RP
Sbjct: 201 PLNSDPDEAFDRLQSEHRRVLETHRNAVGLSAGMSDDFEIAVKHGSTCVRVGTALLGRRP 260
>gi|240279165|gb|EER42670.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
gi|325089453|gb|EGC42763.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 306
Score = 204 bits (520), Expect = 8e-51, Method: Composition-based stats.
Identities = 80/276 (28%), Positives = 114/276 (41%), Gaps = 65/276 (23%)
Query: 2 SLGNKLQVFKQKIENSAI---------LAKRPKDSVSLVAVSKMVDSKKIRVALSCG-QV 51
+L L +I +++ A+RP+ V LVAVSK+ + I++ +
Sbjct: 30 TLVTNLSAVTARITSASASANVSQTWPQAQRPQCPVRLVAVSKLKPASDIQILHQYNPAL 89
Query: 52 IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF---DVIETVSREKTASL 108
F EN LQE +K L ++ FIG LQSNK + +E+V EK ASL
Sbjct: 90 HFGENYLQELLEKSKILP--PGIRWHFIGGLQSNKCVTLARDVRGLWAVESVDSEKKASL 147
Query: 109 LSLEMIKQ----------------------------SRFLPVYIQVNTGYEIQKSGIMPN 140
L ++ L V++QVNT E KSG+ P
Sbjct: 148 LDRGWGERSTQAGVGEDAATTTAAASASEGRDAGADGDRLRVFVQVNTSGEDSKSGVEPA 207
Query: 141 QTKDFVILCR-QKYQLNVEGLMCI-------PPAMGNPKPHFYLLSE----IARECKL-- 186
+ R Q +L ++GLM I M N F L E + +E L
Sbjct: 208 EAVRLCRYIREQCPRLKLQGLMTIGAIARSRATTMENKNEDFLCLRETKERVEKELGLLE 267
Query: 187 --------TKLSMGMTRDFELAIASGATSVRIGSGI 214
+LSMGM+ DFE AIA G+T VR+GS +
Sbjct: 268 GDEEAGEGLELSMGMSGDFEGAIAMGSTQVRVGSVL 303
>gi|254459216|ref|ZP_05072638.1| conserved hypothetical protein TIGR00044 [Campylobacterales
bacterium GD 1]
gi|207084109|gb|EDZ61399.1| conserved hypothetical protein TIGR00044 [Campylobacterales
bacterium GD 1]
Length = 224
Score = 204 bits (519), Expect = 8e-51, Method: Composition-based stats.
Identities = 61/215 (28%), Positives = 101/215 (46%), Gaps = 8/215 (3%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ +K+E + + V VA+SK + I + GQ F ENK+Q+ K K
Sbjct: 10 IDNVVRKVETARLKVS-GHHIVKTVAISKYSTAADIAKLYNIGQRAFGENKVQDLKAKAT 68
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L +E ++ F+G+LQ NK++ ++ + + + A L ++ + L +Q
Sbjct: 69 EL-EELPLEWHFVGNLQKNKINNLLEINPTLFHALDSMELAEELQKKLEAKDMILDALLQ 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIA 181
+N+ E K G MP + R+ +N++G+M I + K F EI
Sbjct: 128 INSAKEESKHGFMPEDASEAYARIQRECPNINLKGVMSIGAHSDDRDVIKKSFETTYEIY 187
Query: 182 REC-KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ T SMGM+ DFELAI G+ VR+GS +F
Sbjct: 188 KNLDGATICSMGMSGDFELAIECGSNMVRLGSIMF 222
>gi|238060244|ref|ZP_04604953.1| alanine racemase [Micromonospora sp. ATCC 39149]
gi|237882055|gb|EEP70883.1| alanine racemase [Micromonospora sp. ATCC 39149]
Length = 250
Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats.
Identities = 65/229 (28%), Positives = 103/229 (44%), Gaps = 13/229 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I ++ R + V+++AV+K + + S G V EN+ QEA
Sbjct: 18 LAVGLARVRARIADACAAVGRDRTEVTMIAVTKTYPASDVLALASLGVVDMGENRDQEAA 77
Query: 63 KKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI-KQSRFL 120
K + + FIG LQ NK +V DV+++V + A L + + R +
Sbjct: 78 GKAAEVAAAGATPRWHFIGQLQRNKCRSVVRYADVVQSVDSVRLARALDAAALTNRDRPV 137
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVIL------CRQKYQLNVEGLMCIPPAMGNPKPHF 174
V++QV+ + + G +P L L + GLM + P P+ F
Sbjct: 138 DVFVQVSVDADPARGGALPGSVDPDAGLGPVAEAVAGAAGLRLAGLMAVAPLGWEPERAF 197
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
L+E+AR + LS GM+ D E+AI GAT VR+GS + G R
Sbjct: 198 ARLAEVARTFRTAHPEAVALSAGMSGDLEIAIEYGATHVRVGSALLGMR 246
>gi|289614726|emb|CBI58503.1| unnamed protein product [Sordaria macrospora]
Length = 260
Score = 204 bits (519), Expect = 9e-51, Method: Composition-based stats.
Identities = 75/246 (30%), Positives = 110/246 (44%), Gaps = 39/246 (15%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC---GQVIFAENKL 58
+L ++LQ +++I A RP V LVAVSK+ + I QV F EN
Sbjct: 15 ALVSQLQGVQERILAVAK--GRP---VRLVAVSKLKPANDILALHQAPQVKQVHFGENYA 69
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIK- 115
QE ++K L + ++ FIG LQS + + ++ + ++ K A L+ +
Sbjct: 70 QELQQKAELLPRT--IKWHFIGGLQSTHCKPLAKISNLFAVSSLDSLKKAQTLNRVRGEL 127
Query: 116 ---------QSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILC-RQKYQLNVEGLMCIP 164
Q L V++QVNT E KSG P +T D + L + GLM I
Sbjct: 128 IASSSTPENQIEKLNVHVQVNTSGEESKSGCSPGQETVDLCKAIVNECPHLKLLGLMTIG 187
Query: 165 PAM-------GNPKPHFYLLSE----IARECKLTK----LSMGMTRDFELAIASGATSVR 209
N F +L E + +E L + LSMGM+ DFE AI G++ VR
Sbjct: 188 AIARSKATTPENENEDFVVLREQRELVEKELGLEEGSLELSMGMSEDFEGAIVMGSSEVR 247
Query: 210 IGSGIF 215
+GS IF
Sbjct: 248 VGSTIF 253
>gi|194476540|ref|YP_002048719.1| hypothetical protein PCC_0050 [Paulinella chromatophora]
gi|171191547|gb|ACB42509.1| hypothetical protein PCC_0050 [Paulinella chromatophora]
Length = 225
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 59/189 (31%), Positives = 91/189 (48%), Gaps = 3/189 (1%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
L+AVSK K+ GQ+ F E+KLQE K L ++ FIG LQSNK+ +
Sbjct: 31 LLAVSKNYSVDKVHYMAMLGQISFGESKLQEGLLKQKQLLDFPNLDWHFIGRLQSNKIRK 90
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
+++ F I +VS A L I++ + +Q+ ++ K G + + +
Sbjct: 91 VINNFHTIHSVSSLALAQKLQQSAIEEEYQPQILLQIKLISDVNKVGFSYTELIESWHIL 150
Query: 150 RQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT 206
LN+ GLMCI P P + F E+ + L + SMGM+ D+ A+ G+
Sbjct: 151 TLLKPLNLIGLMCIAPLDLQPKYRRKLFAKCRELVKILGLKECSMGMSNDWREAVIEGSH 210
Query: 207 SVRIGSGIF 215
VRIGS +F
Sbjct: 211 YVRIGSALF 219
>gi|118466416|ref|YP_881546.1| hypothetical protein MAV_2342 [Mycobacterium avium 104]
gi|118167703|gb|ABK68600.1| conserved hypothetical protein [Mycobacterium avium 104]
Length = 261
Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 53/240 (22%), Positives = 91/240 (37%), Gaps = 23/240 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + ++ V+K + + G E++ QEA
Sbjct: 18 LTHALAAVRSRLAAAAEAAGRNVAEIEVLPVTKFFPATDVVTLSRLGCRAVGESRDQEAT 77
Query: 63 KKWIPLRKEWDV---------QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K + + + +G +Q NK + +V S L +
Sbjct: 78 AKVAEVTRLLATSARTNVAIPRWHMVGHIQRNKARSVARWAHTAHSVDSTHLVSALDRGV 137
Query: 114 IKQSR------FLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
+ VY+QV+ + + G+ P + L++ GLM IP
Sbjct: 138 AAALADGGRIDPMRVYVQVSLDGDESRGGVDISRPGAVDEVCAQVAAANNLDLVGLMAIP 197
Query: 165 PAMGNPKPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P +P F L R LS GM+ DFE+A+ G+T VR+G+ + G RP
Sbjct: 198 PLNSDPDEAFDRLQSEHRRVLETHRNAVGLSAGMSDDFEIAVKHGSTCVRVGTALLGRRP 257
>gi|225555026|gb|EEH03319.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 306
Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 80/276 (28%), Positives = 114/276 (41%), Gaps = 65/276 (23%)
Query: 2 SLGNKLQVFKQKIENSAI---------LAKRPKDSVSLVAVSKMVDSKKIRVALSCG-QV 51
+L L +I +++ A+RP+ V LVAVSK+ + I++ +
Sbjct: 30 TLVTNLSAVTARITSASASANVSQTRPQAQRPQCPVRLVAVSKLKPASDIQILHQYSPAL 89
Query: 52 IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF---DVIETVSREKTASL 108
F EN LQE +K L ++ FIG LQSNK + +E+V EK ASL
Sbjct: 90 HFGENYLQELLEKSKILP--PGIRWHFIGGLQSNKCVTLARDVRGLWAVESVDSEKKASL 147
Query: 109 LSLEMIKQ----------------------------SRFLPVYIQVNTGYEIQKSGIMPN 140
L ++ L V++QVNT E KSG+ P
Sbjct: 148 LDRGWGERSTQAGVGEDAATTTAAASASEGRDAGADGDRLRVFVQVNTSGEDSKSGVEPA 207
Query: 141 QTKDFVILCR-QKYQLNVEGLMCI-------PPAMGNPKPHFYLLSE----IARECKL-- 186
+ R Q +L ++GLM I M N F L E + +E L
Sbjct: 208 EAVRLCRYIREQCPRLKLQGLMTIGAIARSRATTMENKNEDFLCLRETKERVEKELGLLE 267
Query: 187 --------TKLSMGMTRDFELAIASGATSVRIGSGI 214
+LSMGM+ DFE AIA G+T VR+GS +
Sbjct: 268 GDEEAGEGLELSMGMSGDFEGAIAMGSTQVRVGSVL 303
>gi|47207637|emb|CAF90890.1| unnamed protein product [Tetraodon nigroviridis]
Length = 276
Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 69/205 (33%), Positives = 92/205 (44%), Gaps = 22/205 (10%)
Query: 38 DSKKIRVALSCGQVIFAENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VS 92
+ A GQ F EN + E K L ++Q FIG LQ N V+++ V
Sbjct: 72 PQNLVVEAYRRGQRSFGENYVNELLDKASDPLILGSCPEIQWHFIGHLQKNNVNKLLGVP 131
Query: 93 LFDVIETVSREKTASLLS----LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
++ETV K A ++ + L V +QVNT E K G+ P +T D V
Sbjct: 132 NLHLVETVDSVKLADKVNSSWQRIRGASPQRLKVMVQVNTSGEQSKHGLPPEETVDAVRH 191
Query: 149 C-RQKYQLNVEGLMCIPPAMGN----PKPHFYLL----SEIARECKLT----KLSMGMTR 195
L+ GLM I + P P F +L E+ K+ +LSMGM+
Sbjct: 192 ILSHCPALHFSGLMTIGRYGYDLSLGPNPDFQMLLSHRQEVCEALKIPQEEVELSMGMST 251
Query: 196 DFELAIASGATSVRIGSGIFGERPC 220
DFE AI GATSVR+GS IFG R
Sbjct: 252 DFEHAIEVGATSVRVGSIIFGNREY 276
>gi|229071400|ref|ZP_04204622.1| hypothetical protein bcere0025_35720 [Bacillus cereus F65185]
gi|229081153|ref|ZP_04213663.1| hypothetical protein bcere0023_37920 [Bacillus cereus Rock4-2]
gi|228702197|gb|EEL54673.1| hypothetical protein bcere0023_37920 [Bacillus cereus Rock4-2]
gi|228711691|gb|EEL63644.1| hypothetical protein bcere0025_35720 [Bacillus cereus F65185]
Length = 200
Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 57/203 (28%), Positives = 99/203 (48%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + G + EN+ + +K+ K+ V FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVIEAGVIDLGENRNEGFLQKYEHFCKK--VNWHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + K+ + +IQV T E K G+ + F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQKRADKK---VKCFIQVKTSSEESKQGLAIEEVVSF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKL-----TKLSMGMT 194
+ ++ ++ V GLM + P + E+ +E +L +LSMGM+
Sbjct: 117 IQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTEVQELELLHAPCKELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+++AI GAT +R+G+ + G+
Sbjct: 177 NDYKIAIEEGATYIRLGTILVGK 199
>gi|229047585|ref|ZP_04193175.1| hypothetical protein bcere0027_35680 [Bacillus cereus AH676]
gi|228723832|gb|EEL75187.1| hypothetical protein bcere0027_35680 [Bacillus cereus AH676]
Length = 200
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 56/203 (27%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + G + EN+ + +K+ + V FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSK--VNWHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + K+ + +IQV T E K G+ + F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQKRADKK---VKCFIQVKTSSEESKQGLAIEEVVPF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKL-----TKLSMGMT 194
+ ++ ++ V GLM + P + E+ +E +L +LSMGM+
Sbjct: 117 IQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTEVQELELLHAPCKELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+ +AI GAT +R+G+ + G+
Sbjct: 177 NDYTIAIEEGATYIRLGTILVGK 199
>gi|229152098|ref|ZP_04280293.1| hypothetical protein bcere0011_36380 [Bacillus cereus m1550]
gi|228631447|gb|EEK88081.1| hypothetical protein bcere0011_36380 [Bacillus cereus m1550]
Length = 200
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 56/203 (27%), Positives = 98/203 (48%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + + G + EN+ + +K+ + V FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTKEVIEAGIIDLGENRNEGFLQKYEHFGSK--VNWHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + K+ + +IQV T E K G+ + F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQKRADKK---VKCFIQVKTSSEESKQGLAIEEVVSF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKL-----TKLSMGMT 194
+ ++ ++ V GLM + P + E+ +E +L +LSMGM+
Sbjct: 117 IQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTEVQELELLHAPCKELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+ +AI GAT +R+G+ + G+
Sbjct: 177 NDYTIAIEEGATYIRLGTILVGK 199
>gi|270308072|ref|YP_003330130.1| alanine racemase domain protein [Dehalococcoides sp. VS]
gi|270153964|gb|ACZ61802.1| alanine racemase domain protein [Dehalococcoides sp. VS]
Length = 220
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 74/212 (34%), Positives = 109/212 (51%), Gaps = 14/212 (6%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
ILA+ P D V L A K +I A+ G I N L EA++ + + + + F
Sbjct: 12 ILAELPPDVV-LEAAVKKRQPSEILAAIDAGIKIIGHNYLTEAEETYPLIGDK--AEWHF 68
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG LQSNK +IV F V+ETV + AS L+ + + L V+I++N+G E QKSG++
Sbjct: 69 IGKLQSNKCKKIVRRFSVVETVDSIEIASELNRRAAEIDKILSVFIEINSGREKQKSGVL 128
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLSEIAREC--------KLT 187
P +T + L + GLM + PA+ P+ F L E +L
Sbjct: 129 PEETVELAKRISCLSNLKLTGLMTMGPALEAPEELRTIFRLTKIKFDEIASMGLPNTELQ 188
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
LSMGM+ +++A+ GA VR+G+ IFG RP
Sbjct: 189 FLSMGMSGSYKVAVQEGANLVRLGTRIFGPRP 220
>gi|228916538|ref|ZP_04080104.1| hypothetical protein bthur0012_37530 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228928949|ref|ZP_04091981.1| hypothetical protein bthur0010_36410 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935216|ref|ZP_04098042.1| hypothetical protein bthur0009_36680 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228947620|ref|ZP_04109910.1| hypothetical protein bthur0007_37480 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229123414|ref|ZP_04252618.1| hypothetical protein bcere0016_37030 [Bacillus cereus 95/8201]
gi|229186141|ref|ZP_04313310.1| hypothetical protein bcere0004_36880 [Bacillus cereus BGSC 6E1]
gi|228597317|gb|EEK54968.1| hypothetical protein bcere0004_36880 [Bacillus cereus BGSC 6E1]
gi|228660190|gb|EEL15826.1| hypothetical protein bcere0016_37030 [Bacillus cereus 95/8201]
gi|228812140|gb|EEM58471.1| hypothetical protein bthur0007_37480 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228824381|gb|EEM70187.1| hypothetical protein bthur0009_36680 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830756|gb|EEM76361.1| hypothetical protein bthur0010_36410 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228843117|gb|EEM88199.1| hypothetical protein bthur0012_37530 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 200
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 56/203 (27%), Positives = 98/203 (48%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + G + EN+ + +K+ + V FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSK--VNWHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + ++ + +IQV T E K G+ +T F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQKRA---NKKVKCFIQVKTSSEESKQGLAIEETVSF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK--------LTKLSMGMT 194
+ ++ ++ V GLM + P + F L + +E + +LSMGM+
Sbjct: 117 IQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQKEVQGLELLHAPCKELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+ +AI GAT +R+G+ + G+
Sbjct: 177 NDYTIAIEEGATYIRLGTILVGK 199
>gi|228954177|ref|ZP_04116205.1| hypothetical protein bthur0006_35490 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229180176|ref|ZP_04307520.1| hypothetical protein bcere0005_35220 [Bacillus cereus 172560W]
gi|229192070|ref|ZP_04319039.1| hypothetical protein bcere0002_37260 [Bacillus cereus ATCC 10876]
gi|228591396|gb|EEK49246.1| hypothetical protein bcere0002_37260 [Bacillus cereus ATCC 10876]
gi|228603385|gb|EEK60862.1| hypothetical protein bcere0005_35220 [Bacillus cereus 172560W]
gi|228805497|gb|EEM52088.1| hypothetical protein bthur0006_35490 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
Length = 200
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 56/203 (27%), Positives = 98/203 (48%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + G + EN+ + +K+ + V FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVIEAGVIDLGENRNEGFLQKYEHFGSK--VNWHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + K+ + +IQV T E K G+ + F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQKRADKK---VKCFIQVKTSSEESKQGLAIEEVVSF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKL-----TKLSMGMT 194
+ ++ ++ V GLM + P + E+ +E +L +LSMGM+
Sbjct: 117 IQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTEVQELELLHAPCKELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+++AI GAT +R+G+ + G+
Sbjct: 177 NDYKIAIEEGATYIRLGTILVGK 199
>gi|296818063|ref|XP_002849368.1| alanine racemase family protein [Arthroderma otae CBS 113480]
gi|238839821|gb|EEQ29483.1| alanine racemase family protein [Arthroderma otae CBS 113480]
Length = 280
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 80/276 (28%), Positives = 115/276 (41%), Gaps = 66/276 (23%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDS------------------VSLVAVSKMVDSKKIRV 44
L L ++I +A ++R D V LVAVSK+ + I
Sbjct: 10 LIANLSSVSKRI--AAASSRRNHDETSPSSNNNNTNSDSPAAPVRLVAVSKLKPASDILA 67
Query: 45 ALS--CGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF---DVIET 99
S + F EN +QE +K L +++ FIG LQSNK + +E+
Sbjct: 68 LHSPPTSHLHFGENYVQELLEKSKVLP--PEIRWHFIGGLQSNKCVMLAREVRGLWAVES 125
Query: 100 VSREKTASLLSLEMIKQ------------------SRFLPVYIQVNTGYEIQKSGIMPNQ 141
V EK ASLL ++ R L V++QVNT E + + +
Sbjct: 126 VDTEKKASLLDKGWGERPEFKDKGTVDTDGTSEQEDRRLRVFVQVNTSGEESEPSV---E 182
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAM-------GNPKPHFYLLSEIAR--ECKLT----- 187
F+ Q +L ++GLM I N F L + E KL+
Sbjct: 183 LCRFIR--EQCPRLKLQGLMTIGAIARSKATTPENENEDFACLRDTKDMVEEKLSLEGKD 240
Query: 188 --KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+LSMGM+ DFE AIA G++ VR+GS IFG RP +
Sbjct: 241 RLELSMGMSNDFEGAIAMGSSQVRVGSTIFGARPPK 276
>gi|331238864|ref|XP_003332086.1| alanine racemase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
gi|309311076|gb|EFP87667.1| alanine racemase [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
Length = 264
Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 72/238 (30%), Positives = 106/238 (44%), Gaps = 35/238 (14%)
Query: 10 FKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC-GQVIFAENKLQEAKKKWIPL 68
Q++E +A + R V LVAVSK+ + I G + F EN + E ++K L
Sbjct: 27 INQQVEQAA--SGR---EVRLVAVSKLKPASDILTLYRTTGHLHFGENYVSELQEKVKAL 81
Query: 69 RKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIKQS-----RFLP 121
D++ FIG+LQSNK + + +ETV A LL + L
Sbjct: 82 PG--DIKWHFIGALQSNKCKILGAIPNLFAVETVDSLHKAQLLEKSRSGLASSVQVNPLE 139
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVI---------LCRQKYQLNVEGLMCIPPAMGN--- 169
VY+QVNT E K+G + + + + + L + GLM I +
Sbjct: 140 VYLQVNTSEEASKAGFITPSNEPILSSNLHSTAKYIKEECRWLKLAGLMTIGSIGQSKSD 199
Query: 170 --PKPHFYLLSEIARECKLT------KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F L ++ + + LSMGM+ DF LAI G+ +VR+GS IFGERP
Sbjct: 200 QGTNKDFERLVQLRDQLSESLGGLELGLSMGMSADFALAIKMGSDNVRVGSSIFGERP 257
>gi|229174567|ref|ZP_04302097.1| hypothetical protein bcere0006_36580 [Bacillus cereus MM3]
gi|228608872|gb|EEK66164.1| hypothetical protein bcere0006_36580 [Bacillus cereus MM3]
Length = 200
Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats.
Identities = 56/203 (27%), Positives = 98/203 (48%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + G + EN+ + +K+ + V FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNESFLQKYEHFGSK--VNWHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + K+ + ++QV T E K G+ +T F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQKRADKK---VKCFVQVKTSSEESKQGLAIEETVSF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKL-----TKLSMGMT 194
+ ++ ++ V GLM + P + E+ +E +L +LSMGM+
Sbjct: 117 IQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKELCMLQTEVQELELLHAPCKELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+ +AI GAT +R+G+ + G+
Sbjct: 177 NDYTIAIEEGATYIRLGTILVGK 199
>gi|260891128|ref|ZP_05902391.1| pyridoxal phosphate enzyme, YggS family [Leptotrichia hofstadii
F0254]
gi|260859155|gb|EEX73655.1| pyridoxal phosphate enzyme, YggS family [Leptotrichia hofstadii
F0254]
Length = 227
Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats.
Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 14/223 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + I + V ++ VSK D ++ + + G F EN+ Q +
Sbjct: 8 IQQNYEKILEDI----KKYSPYPEKVKILFVSKYFDVEEHKALIEMGYDYFGENRAQLYR 63
Query: 63 KKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K E +++ FIG LQ NK+ I++ ++I ++ + ++ + I+ R +
Sbjct: 64 DKLNEFSDEKYKNIKWDFIGRLQKNKIKYIINSVNLIHSIDSYELLDEINKKAIENDRII 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
IQVN E K+G+ K + + G M + P + +F +
Sbjct: 124 NGLIQVNVSKEESKTGVYIEDFKKDSEKYFSMSNVKIIGFMTMAPFEASESEINDYFLNM 183
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ E + +T++SMGM+ D+ A+ +GAT +RIGS +F
Sbjct: 184 RKLKEEYQKQHDYVTEISMGMSNDYVEALKNGATIIRIGSKLF 226
>gi|123967982|ref|YP_001008840.1| TIM-barrel fold family protein [Prochlorococcus marinus str.
AS9601]
gi|123198092|gb|ABM69733.1| Predicted enzyme with a TIM-barrel fold [Prochlorococcus marinus
str. AS9601]
Length = 190
Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats.
Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 3/188 (1%)
Query: 34 SKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL 93
SK S++I+ + GQ F E+K+QEA +K + L++ + FIG +QSNK+ +IV
Sbjct: 2 SKGFKSQEIKTIQNIGQNDFGESKVQEAFEKQLTLKELKQINWHFIGRIQSNKIRKIVQN 61
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY 153
F I +V + +S ++ + + +QV + K G P ++
Sbjct: 62 FKYIHSVDSFEKLQKISNISREEKKKPFIMLQVKLSDDPTKGGFNPESLILKWTEIQELK 121
Query: 154 QLNVEGLMCIPPAMGNPKPH---FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRI 210
+++ GLM I P +PK + F +A +L SMGM+ D+E AI +G+T +R+
Sbjct: 122 NISLTGLMTINPKGLSPKENLGLFKKCRALADYLQLPDCSMGMSGDWEEAIDAGSTWLRL 181
Query: 211 GSGIFGER 218
G+ IFG R
Sbjct: 182 GALIFGGR 189
>gi|228922653|ref|ZP_04085953.1| hypothetical protein bthur0011_36380 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228960118|ref|ZP_04121782.1| hypothetical protein bthur0005_35890 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229111370|ref|ZP_04240923.1| hypothetical protein bcere0018_36160 [Bacillus cereus Rock1-15]
gi|229129178|ref|ZP_04258151.1| hypothetical protein bcere0015_36230 [Bacillus cereus BDRD-Cer4]
gi|229146472|ref|ZP_04274843.1| hypothetical protein bcere0012_36150 [Bacillus cereus BDRD-ST24]
gi|228637105|gb|EEK93564.1| hypothetical protein bcere0012_36150 [Bacillus cereus BDRD-ST24]
gi|228654415|gb|EEL10280.1| hypothetical protein bcere0015_36230 [Bacillus cereus BDRD-Cer4]
gi|228672146|gb|EEL27437.1| hypothetical protein bcere0018_36160 [Bacillus cereus Rock1-15]
gi|228799634|gb|EEM46587.1| hypothetical protein bthur0005_35890 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228837082|gb|EEM82423.1| hypothetical protein bthur0011_36380 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 200
Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats.
Identities = 56/203 (27%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + G + EN+ + +K+ + V FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSK--VNWHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + K+ + +IQV T E K G+ + F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQKRADKK---VKCFIQVKTSSEESKQGLAIEEVVSF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKL-----TKLSMGMT 194
+ ++ ++ V GLM + P + E+ +E +L +LSMGM+
Sbjct: 117 IQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTEVQELELLHAPCKELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+ +AI GAT +R+G+ + G+
Sbjct: 177 NDYTIAIEEGATYIRLGTILVGK 199
>gi|308063841|gb|ADO05728.1| hypothetical protein HPSAT_05040 [Helicobacter pylori Sat464]
Length = 192
Score = 202 bits (516), Expect = 2e-50, Method: Composition-based stats.
Identities = 66/192 (34%), Positives = 100/192 (52%), Gaps = 7/192 (3%)
Query: 32 AVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV 91
AVSK + I+ +C Q F ENK+Q+ K K L + ++ IGSLQ NK++ ++
Sbjct: 2 AVSKNASLEAIQNYYNCSQRAFGENKVQDLKIKMHSL-EHLPLEWHMIGSLQENKINALL 60
Query: 92 SLF-DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
SL ++ ++ K A + L +QVN+ YE KSG+MP +T +
Sbjct: 61 SLKPALLHSLDSLKLALKIEKRCEILGVNLNALLQVNSAYEESKSGVMPEETLEIYSQIS 120
Query: 151 Q-KYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-LTKLSMGMTRDFELAIASGA 205
+ +L ++GLMCI + + F ++ K + LSMGM+ DFELAIA GA
Sbjct: 121 ETCKRLKLKGLMCIGTHADDEKEIEKSFITTKKLFDRLKNASVLSMGMSDDFELAIACGA 180
Query: 206 TSVRIGSGIFGE 217
+RIGS +F E
Sbjct: 181 NLLRIGSFLFKE 192
>gi|24214180|ref|NP_711661.1| PLP dependent enzyme class III [Leptospira interrogans serovar Lai
str. 56601]
gi|45658124|ref|YP_002210.1| hypothetical protein LIC12276 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|24195079|gb|AAN48679.1| PLP dependent enzyme class III [Leptospira interrogans serovar Lai
str. 56601]
gi|45601366|gb|AAS70847.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 222
Score = 202 bits (514), Expect = 3e-50, Method: Composition-based stats.
Identities = 62/226 (27%), Positives = 111/226 (49%), Gaps = 13/226 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + Q ++++ R ++ +L+AVSK +KI+ A+ CG V F EN++QE
Sbjct: 1 MGVLESYQKIYEELQQL-----RSENPPTLIAVSKFQPIEKIKEAIGCGVVHFGENRIQE 55
Query: 61 AKKKWIPLRKEWD--VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K+ K+ + + L IG +QS + ++ + V + L +++ +
Sbjct: 56 GIEKFSQWLKDKNTSLVLHHIGPVQSGTLRKLFLGYSYAHGVGSVGIVNELLTRALREEK 115
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL--NVEGLMCIPPAMGN---PKPH 173
+ ++Q N E K G + + + + +EGLM + P+ G+ +
Sbjct: 116 KILYFLQANLTGENTKHGFERKELIEILKQKEKLSNTYCKLEGLMVMGPSDGDLTKTREV 175
Query: 174 FYLLSEIARE-CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F LS+ ++ KLSMGM+ D+++AI G+ VRIGS IFGER
Sbjct: 176 FRELSKFKKDYIPEAKLSMGMSGDYKIAIEEGSDFVRIGSAIFGER 221
>gi|228940989|ref|ZP_04103547.1| hypothetical protein bthur0008_36290 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228973920|ref|ZP_04134495.1| hypothetical protein bthur0003_36750 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228980509|ref|ZP_04140819.1| hypothetical protein bthur0002_36770 [Bacillus thuringiensis Bt407]
gi|228779329|gb|EEM27586.1| hypothetical protein bthur0002_36770 [Bacillus thuringiensis Bt407]
gi|228785786|gb|EEM33790.1| hypothetical protein bthur0003_36750 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818668|gb|EEM64735.1| hypothetical protein bthur0008_36290 [Bacillus thuringiensis
serovar berliner ATCC 10792]
Length = 200
Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats.
Identities = 56/203 (27%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + G + EN+ + +K+ + V FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVIETGIIDLGENRNEGFLQKYEHFGSK--VNWHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + K+ + +IQV T E K G+ + F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQKRADKK---VKCFIQVKTSSEESKQGLAIEEVVSF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKL-----TKLSMGMT 194
+ ++ ++ V GLM + P + E+ +E +L +LSMGM+
Sbjct: 117 IQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTKVQELELLHAPCKELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+ +AI GAT +R+G+ + G+
Sbjct: 177 NDYTIAIEEGATYIRLGTILVGK 199
>gi|229031532|ref|ZP_04187532.1| hypothetical protein bcere0028_35860 [Bacillus cereus AH1271]
gi|228729821|gb|EEL80801.1| hypothetical protein bcere0028_35860 [Bacillus cereus AH1271]
Length = 200
Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats.
Identities = 57/203 (28%), Positives = 98/203 (48%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + G + EN+ + +K+ + V FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSK--VNWHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + K+ + +IQV T E K G+ +T F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQKRADKK---VKCFIQVKTSSEESKQGLAIEETISF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK--------LTKLSMGMT 194
+ ++ ++ V GLM + P + F L ++ E + +LSMGM+
Sbjct: 117 IQSLQELDKVEVVGLMTMAPFTEEEEEIRRCFKELRKLQTEVQELELLHAPCRELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+ +AI GAT +R+G+ + G+
Sbjct: 177 NDYTIAIEEGATYIRLGTILVGK 199
>gi|229140549|ref|ZP_04269104.1| hypothetical protein bcere0013_36480 [Bacillus cereus BDRD-ST26]
gi|229198012|ref|ZP_04324726.1| hypothetical protein bcere0001_35470 [Bacillus cereus m1293]
gi|228585491|gb|EEK43595.1| hypothetical protein bcere0001_35470 [Bacillus cereus m1293]
gi|228643110|gb|EEK99386.1| hypothetical protein bcere0013_36480 [Bacillus cereus BDRD-ST26]
Length = 200
Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats.
Identities = 57/203 (28%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + G + EN+ + +K+ + V FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSK--VNWHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + K+ + +IQV T E K G+ +T F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQKRADKK---VKCFIQVKTSSEESKQGLAIEETVSF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK--------LTKLSMGMT 194
+ ++ ++ V GLM + P + F L + E + +LSMGM+
Sbjct: 117 IQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKTLRMLQTEVQELELLHAPCKELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+ +AI GAT +R+G+ + G+
Sbjct: 177 NDYTIAIEEGATYIRLGTILVGK 199
>gi|115385721|ref|XP_001209407.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114187854|gb|EAU29554.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 301
Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats.
Identities = 70/233 (30%), Positives = 99/233 (42%), Gaps = 35/233 (15%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS--CGQVIFAENKLQ 59
+L L +I +A + RP + L+AVSK+ + I G + F EN LQ
Sbjct: 13 TLLANLTSVTSRITAAA-KSDRP---IRLIAVSKLKPASDILALHQPPGGHLHFGENYLQ 68
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF---DVIETVSREKTASLLSL----- 111
E ++K L ++ FIG LQSNK + +E+V EK ASLL
Sbjct: 69 ELQEKAKLLPA--SIRWHFIGGLQSNKCVTLARDVRGLWAVESVDSEKKASLLDKGWGER 126
Query: 112 ----EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCR-QKYQLNVEGLMCIPP 165
L V++QVNT E KSG+ P R + +L ++G+M I
Sbjct: 127 SAELRASDAEDRLRVFVQVNTSGEENKSGVDPGDGAVALCRFIRDKCPRLRLQGVMTIGA 186
Query: 166 AM-------GNPKPHFYLLSEIA----RECKLT--KLSMGMTRDFELAIASGA 205
N F L + +E L +LSMGM+ DFE AIA G+
Sbjct: 187 IARSKATTPENENEDFLCLRDTRDRVVKELGLEGLELSMGMSEDFEGAIALGS 239
>gi|228909726|ref|ZP_04073549.1| hypothetical protein bthur0013_38780 [Bacillus thuringiensis IBL
200]
gi|228850015|gb|EEM94846.1| hypothetical protein bthur0013_38780 [Bacillus thuringiensis IBL
200]
Length = 200
Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats.
Identities = 56/203 (27%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + G + EN+ + +K+ + V FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVIETGIIDLGENRNEGFLQKYEHFGSK--VNWHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + K+ + +IQV T E K G+ + F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQKRADKK---VKCFIQVKTSSEESKQGLAIEEVVSF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKL-----TKLSMGMT 194
+ ++ ++ V GLM + P + E+ +E +L +LSMGM+
Sbjct: 117 IQSLQEFDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQTEVQELELLHAPCKELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+ +AI GAT +R+G+ + G+
Sbjct: 177 NDYTIAIEEGATYIRLGTILVGK 199
>gi|119494577|ref|ZP_01624710.1| hypothetical protein L8106_15824 [Lyngbya sp. PCC 8106]
gi|119452083|gb|EAW33294.1| hypothetical protein L8106_15824 [Lyngbya sp. PCC 8106]
Length = 193
Score = 201 bits (513), Expect = 4e-50, Method: Composition-based stats.
Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 21/200 (10%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
S+ ++ + ++ DSV +VAV+K V + IR+A + G F EN++ EA
Sbjct: 4 SIAERIAEIRSQV----------PDSVRIVAVTKTVSVEAIRIAYAAGIRDFGENRISEA 53
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K L+ D+ IG +QSNK + V F I +V K A L +
Sbjct: 54 MEKQEQLQDLSDITWHLIGHIQSNKAIKAVQHFQWIHSVDSLKLAQRLDRLAQESDCQPQ 113
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH---FYLLS 178
V +QV + K G ++ + + Q Q+ ++GLM IPP N F S
Sbjct: 114 VCLQVKILTDPNKYGWTVSELLEDLAELNQCQQIQIKGLMTIPPLGLNHSETVSVFEQTS 173
Query: 179 EIAR--------ECKLTKLS 190
E+A ++ +LS
Sbjct: 174 ELAHKIQQQGWSNLEMKELS 193
>gi|21672794|ref|NP_660861.1| hypothetical protein BUsg531 [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25009595|sp|Q8K929|Y531_BUCAP RecName: Full=UPF0001 protein BUsg_531
gi|21623443|gb|AAM68072.1| hypothetical 25.8 kDa protein [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 229
Score = 201 bits (513), Expect = 5e-50, Method: Composition-based stats.
Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 8/200 (4%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
P + ++AVSK KI++A+S G F EN +QE K L+K ++ FIG +Q
Sbjct: 25 PLKKIKIIAVSKNQGIDKIKLAISSGIHEFGENYVQEGIDKIQKLKKYQNIIWHFIGKVQ 84
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
SNK I FD +T+ REK A LL+ K+S + V +Q+N E+ K+GI K
Sbjct: 85 SNKTKIIAENFDWCQTIDREKIAILLNKYREKKSFPMNVLMQINISNEVTKNGICIKNYK 144
Query: 144 DFVILCRQKYQLNVEGLMCIPPAM-------GNPKPHFYLLSEIARECK-LTKLSMGMTR 195
LN G+M +P N K ++ +E+ +E + + LS+G +
Sbjct: 145 KLAKTISLMPNLNFRGIMMMPEVEKKMIKQNDNYKNGNFIFNELKKEYQSIDTLSLGTSF 204
Query: 196 DFELAIASGATSVRIGSGIF 215
D E A+ + +RIG IF
Sbjct: 205 DIENALLFHSNMIRIGRFIF 224
>gi|328858513|gb|EGG07625.1| hypothetical protein MELLADRAFT_62402 [Melampsora larici-populina
98AG31]
Length = 262
Score = 201 bits (513), Expect = 5e-50, Method: Composition-based stats.
Identities = 76/248 (30%), Positives = 114/248 (45%), Gaps = 39/248 (15%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVI--FAENKLQE 60
L ++ +++++N+A R V LVAVSK+ + I G F EN + E
Sbjct: 18 LMTNVKKIQEEVQNAAQ--GRN---VRLVAVSKLKPASDILGLYE-GIQHLHFGENYVSE 71
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIKQSR 118
+K L + D++ FIG+LQ+NK + + +ETV K A L+ + S+
Sbjct: 72 LVEKAKLLPQ--DIKWHFIGALQTNKCKILGSIPNLFAVETVDTIKKAEALNKSRSQLSQ 129
Query: 119 F-------LPVYIQVNTGYEIQKSGI-----MPNQTKDFVILC----RQKYQLNVEGLMC 162
L +YIQ+NT E+ KSGI T + ++L L + GLM
Sbjct: 130 TSCNPIAKLKIYIQINTSNELNKSGIKVEQESIEDTSELILLSNYIKEDCESLELSGLMT 189
Query: 163 IPPA-----MGNPKPHFYLLSEIARECKLTK------LSMGMTRDFELAIASGATSVRIG 211
I + F+ L +I + LSMGM+ DF LAI G+ +VR+G
Sbjct: 190 IGSFKESTTDSDFNEDFHRLIKIRNLLEDKIGIKPLGLSMGMSSDFSLAIRMGSDNVRVG 249
Query: 212 SGIFGERP 219
S IFGERP
Sbjct: 250 SKIFGERP 257
>gi|300871778|ref|YP_003786651.1| proline synthetase associated protein [Brachyspira pilosicoli
95/1000]
gi|300689479|gb|ADK32150.1| proline synthetase associated protein [Brachyspira pilosicoli
95/1000]
Length = 228
Score = 201 bits (513), Expect = 5e-50, Method: Composition-based stats.
Identities = 67/223 (30%), Positives = 107/223 (47%), Gaps = 9/223 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVI-FAENKLQE 60
++ NK + I + + + +VAVSK + I+ LS + E+K Q
Sbjct: 5 TIKNKYDSIIENINSLKDKYNINYN-IDVVAVSKYSSIETIKEFLSLNINLPLGESKAQS 63
Query: 61 AKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
+ + L K +D + FIG +QSNKV IV D+I++V + A ++ E IK ++
Sbjct: 64 LRDRAEELNKNYDNIIWHFIGRIQSNKVKYIVKYADLIQSVDSIEIAEYINKEAIKNNKV 123
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
+ +Q N E QK G + + +N++GLM I + N + F
Sbjct: 124 QDILLQFNISNEEQKGGFNLSDYNMVYDKIKNLPNVNIKGLMGISLKVDNDFEIEKEFES 183
Query: 177 LSEIA---RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
L+E+ ++ + LSMGMT D+ LAI GA +RIGSG G
Sbjct: 184 LNEVFIKLKDENTSILSMGMTNDYHLAIKHGANMIRIGSGFLG 226
>gi|302419101|ref|XP_003007381.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261353032|gb|EEY15460.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 260
Score = 201 bits (513), Expect = 5e-50, Method: Composition-based stats.
Identities = 74/242 (30%), Positives = 102/242 (42%), Gaps = 32/242 (13%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKLQE 60
+L +L+ ++ ++A RP V LVAVSK+ + I V F EN QE
Sbjct: 16 ALTTQLEAVTARLTSAAK--GRP---VRLVAVSKLKPANDILALHRDASVVHFGENYAQE 70
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMIKQSR 118
+K L ++ FIG LQS ++ + +V K A LL+
Sbjct: 71 LIQKVDLLPST--LRWHFIGGLQSGHAKKLAHIPNLFCVSSVDSLKKARLLNNARADLLA 128
Query: 119 ------FLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCR-QKYQLNVEGLMCI------- 163
L V++QVNT E KSG P ++T + LN+ GLM I
Sbjct: 129 HGEDVDKLNVHVQVNTSGEEAKSGAAPGDETVALCRAIEDECPALNLLGLMTIGAIARSK 188
Query: 164 PPAMGNPKPHFYLLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
F L E + +LSMGM+ DFE A+A G+ VRIGS IFG
Sbjct: 189 ATTAETENEDFLALKEQRDLVRKELGLERELELSMGMSNDFEGAVAMGSDEVRIGSTIFG 248
Query: 217 ER 218
ER
Sbjct: 249 ER 250
>gi|255322257|ref|ZP_05363403.1| pyridoxal phosphate enzyme, YggS family [Campylobacter showae
RM3277]
gi|255300630|gb|EET79901.1| pyridoxal phosphate enzyme, YggS family [Campylobacter showae
RM3277]
Length = 211
Score = 201 bits (513), Expect = 5e-50, Method: Composition-based stats.
Identities = 66/218 (30%), Positives = 110/218 (50%), Gaps = 17/218 (7%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
KL ++IEN+ R ++V L+AVSK V +K++ L GQ F EN++QE K K
Sbjct: 2 KLAQILERIENA-----RTGEAVKLIAVSKNVTTKEVLELLEQGQTSFGENRVQELKNKS 56
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYI 124
L ++ FIG LQSNK++ +++L + ++ + A + ++ + LP +
Sbjct: 57 EILSNLP-IEWHFIGRLQSNKINHLLALKPALWQSCESVEAALAVDKRLVCE---LPCLL 112
Query: 125 QVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEI 180
Q+N+ +E K GI P F+ + ++ L G+M I + + K F +I
Sbjct: 113 QINSAHEDSKQGISPEAAQDAFLQIAQECKFLKPIGVMSIGAHVDDEKVVKKSFETTRKI 172
Query: 181 AREC---KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
SMGM+ DFELAI G+ +R+GS ++
Sbjct: 173 YENLQSKGAQICSMGMSGDFELAIKCGSNMIRLGSILY 210
>gi|184201123|ref|YP_001855330.1| hypothetical protein KRH_14770 [Kocuria rhizophila DC2201]
gi|183581353|dbj|BAG29824.1| hypothetical protein [Kocuria rhizophila DC2201]
Length = 297
Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats.
Identities = 65/256 (25%), Positives = 107/256 (41%), Gaps = 40/256 (15%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDS------VSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
L +L +++I ++A A+RP+D SLV V+K ++ + G EN
Sbjct: 42 LAQRLSAVRRRILDAA--AQRPEDRSHGGELPSLVVVTKFFPAQDVLRLRELGVRAVGEN 99
Query: 57 KLQEAKKKWIPLRKEWDVQ--------LRFIGSLQSNKVSEIVSLFDVIETVSREKTASL 108
K QEA K + +E ++ F+G LQSNK +V + +V R +
Sbjct: 100 KDQEAGPKAAEVAEELALREPSVTPPVWHFVGQLQSNKAKHVVRYASWVHSVDRPSLVTA 159
Query: 109 LSLEMIKQ---------------SRFLPVYIQV----NTGYEIQKSGIMPNQTKDFVILC 149
L + +R L +QV + + + G P+ +
Sbjct: 160 LGKAVRNHRDAVAAGDAAPGPCATRDLTCLVQVDVDPHAAEQGGRGGAHPDAVAELADAI 219
Query: 150 RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTK-----LSMGMTRDFELAIASG 204
L++ G+M + P P+ F L EI++ + +S GM+ D E A+ +G
Sbjct: 220 AGTEGLSLGGVMTVAPRGARPEEAFERLWEISQRLQRRHPDARAVSAGMSGDLEAAVGAG 279
Query: 205 ATSVRIGSGIFGERPC 220
AT VRIGS + G RP
Sbjct: 280 ATHVRIGSDVLGARPA 295
>gi|313837213|gb|EFS74927.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL037PA2]
gi|314927769|gb|EFS91600.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL044PA1]
gi|314971984|gb|EFT16082.1| pyridoxal phosphate enzyme, YggS family [Propionibacterium acnes
HL037PA3]
Length = 198
Score = 201 bits (512), Expect = 6e-50, Method: Composition-based stats.
Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 13/194 (6%)
Query: 41 KIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVIET 99
+ A G +F ENK+Q+A K + ++ IG LQ+NK + +
Sbjct: 1 MVDEAYQAGYRLFGENKVQDALAKSELMDADHPGLEWAIIGGLQTNKAKYVARFAAEFQA 60
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ K A L + ++ L V +QVN+ E QKSGI P++ +F L+V G
Sbjct: 61 LDSLKVAHELDKRLQQEGHQLRVLVQVNSSAEPQKSGIAPDEAVEFARELAAFDSLDVRG 120
Query: 160 LMCIP---PAMGNPKPHFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSV 208
LM + P F L++ + + ++LSMGM+ D E+AIA G+T V
Sbjct: 121 LMTVALNSPDQQAVADCFDLVAATQEKLRQEAGDISSWSELSMGMSGDLEIAIAHGSTQV 180
Query: 209 RIGSGIFGER-PCQ 221
RIG+ IFG R P Q
Sbjct: 181 RIGTDIFGARDPAQ 194
>gi|300780837|ref|ZP_07090691.1| YggS family pyridoxal phosphate enzyme [Corynebacterium genitalium
ATCC 33030]
gi|300532544|gb|EFK53605.1| YggS family pyridoxal phosphate enzyme [Corynebacterium genitalium
ATCC 33030]
Length = 235
Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats.
Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 15/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ ++ + + A R SV+++ V+K + + + G EN+ QEAK
Sbjct: 8 LAANLEGLRKDVRAAERSAGREDGSVAILPVTKFHPASDVALLAELGIATVGENREQEAK 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLS-------LEMIK 115
+K L +++ IG +Q+ K + + + ++ K A L +
Sbjct: 68 QKAAELP---NMRFAMIGQIQTKKANSVARWASEVHSLDSVKLARALDSGVALALERGDR 124
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
S LP IQ++ + + G+ + + V Q + V+G M +PP +P F
Sbjct: 125 TSDQLPCLIQLSFDEDENRGGVRESDLAELVAEAEQLEHVLVDGFMVVPPIDADPARVFE 184
Query: 176 LLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
IA + + LS GM+ DFE AI G+ VR+G+ + G+RP
Sbjct: 185 ASRSIADDYAGRLGRPMLLSAGMSHDFEQAITCGSDIVRVGTRLLGQRPV 234
>gi|227504698|ref|ZP_03934747.1| alanine racemase [Corynebacterium striatum ATCC 6940]
gi|227198708|gb|EEI78756.1| alanine racemase [Corynebacterium striatum ATCC 6940]
Length = 231
Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats.
Identities = 60/229 (26%), Positives = 101/229 (44%), Gaps = 16/229 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ + +IE+ A A R + L+ V+K + + + G AEN+ QEA+
Sbjct: 7 LQAGLERTRAQIEDFARAAGR--EVPQLLPVTKFHPAGDVALLAELGVTDVAENREQEAR 64
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL------EMIKQ 116
K L V+ IG +Q+ K + + + ++ K A+ L E +
Sbjct: 65 AKAAELPA---VRFHMIGQIQTKKANHVARWAHSVHSLDSAKLATALDRGVANAQESGDR 121
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
LPV+IQV+ + + G+ V L + L ++G M +PP + F
Sbjct: 122 DDALPVFIQVSADGDTARGGVALPDVPSLVELVEELVNLELQGFMVVPPLDSDAAEVFGR 181
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + + + K+S GM+ D AIA+G VR+G+GI G RP
Sbjct: 182 VRTLTDDVARLLGRPLKMSAGMSADLGEAIAAGTDIVRVGTGIMGPRPV 230
>gi|118470091|ref|YP_888497.1| hypothetical protein MSMEG_4220 [Mycobacterium smegmatis str. MC2
155]
gi|118171378|gb|ABK72274.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
155]
Length = 291
Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats.
Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 17/218 (7%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW---DVQ 75
A R + L+ V+K I + G + F E++ QEA K +R E ++
Sbjct: 42 ESAGRNVGEIELLPVTKFFPGSDIVILNQLGCLSFGESREQEAANKIAEVRAELPDAPIR 101
Query: 76 LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK------QSRFLPVYIQVNTG 129
IG +Q NK + +V + + L +S L VY+Q++
Sbjct: 102 WHMIGRIQRNKARAVAGWAYAAHSVDNARLIAALDRGAADALGRGVRSEPLRVYLQISLD 161
Query: 130 YEIQKSGI---MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL 186
+ ++ G+ P+ + L GLM IPP + F L+ +
Sbjct: 162 GDAERGGVDIGDPDLVDELCAAIDGADGLTFTGLMAIPPLGADADEAFARLAAERDRVQK 221
Query: 187 T-----KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
++S GM+ D E A+ G+T VR+G+ + G RP
Sbjct: 222 AYPQRLEMSAGMSNDLESAVKHGSTCVRVGTALMGPRP 259
>gi|229075657|ref|ZP_04208639.1| hypothetical protein bcere0024_36220 [Bacillus cereus Rock4-18]
gi|229098371|ref|ZP_04229316.1| hypothetical protein bcere0020_36040 [Bacillus cereus Rock3-29]
gi|229104463|ref|ZP_04235130.1| hypothetical protein bcere0019_36090 [Bacillus cereus Rock3-28]
gi|229117397|ref|ZP_04246773.1| hypothetical protein bcere0017_36750 [Bacillus cereus Rock1-3]
gi|228666007|gb|EEL21473.1| hypothetical protein bcere0017_36750 [Bacillus cereus Rock1-3]
gi|228678905|gb|EEL33115.1| hypothetical protein bcere0019_36090 [Bacillus cereus Rock3-28]
gi|228684988|gb|EEL38921.1| hypothetical protein bcere0020_36040 [Bacillus cereus Rock3-29]
gi|228707433|gb|EEL59624.1| hypothetical protein bcere0024_36220 [Bacillus cereus Rock4-18]
Length = 200
Score = 201 bits (511), Expect = 7e-50, Method: Composition-based stats.
Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 16/203 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
+ LVAV+K V +K + G + EN+ + +K+ + V FIGSLQ+
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVMEAGIIDLGENRNEGFLQKYEHFGSK--VNWHFIGSLQTR 59
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
KV EI++ D + ++ R A + K+ + +IQV T E K G+ +T F
Sbjct: 60 KVKEIINEIDYLHSLDRLSLAKEIQKRADKK---VKCFIQVKTSSEESKQGLAIEETVSF 116
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR-----------ECKLTKLSMGMT 194
+ ++ ++ V GLM + P + ++ + +LSMGM+
Sbjct: 117 IQSLQELDKIEVVGLMTMAPFTEEEEEVRRCFKDLRKLQIEVQELNLLHAPCKELSMGMS 176
Query: 195 RDFELAIASGATSVRIGSGIFGE 217
D+ +AI GAT +R+G+ + G+
Sbjct: 177 NDYTIAIEEGATYIRLGTILVGK 199
>gi|302927051|ref|XP_003054417.1| hypothetical protein NECHADRAFT_75105 [Nectria haematococca mpVI
77-13-4]
gi|256735358|gb|EEU48704.1| hypothetical protein NECHADRAFT_75105 [Nectria haematococca mpVI
77-13-4]
Length = 259
Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats.
Identities = 76/246 (30%), Positives = 104/246 (42%), Gaps = 34/246 (13%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC--GQVIFAENKLQ 59
+L ++L K ++ A R V LVAVSK+ + I Q F EN Q
Sbjct: 17 ALVSQLNSVKDRLTAVAN--GRN---VRLVAVSKLKPANDILALHKAPTSQTHFGENYAQ 71
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E +K L VQ FIG +++I +LF + +V K A LL+
Sbjct: 72 ELTQKAALLPNT--VQWHFIGG-HCKSLAKIPNLF-CVSSVDTSKKAQLLNTTRGNLLAS 127
Query: 120 LP------VYIQVNTGYEIQKSGIMP-NQTKDFVILC-RQKYQLNVEGLMCI-------P 164
P V++QVNT E KSG P T L + GLM I
Sbjct: 128 QPDLSKLGVHVQVNTSGEEAKSGCAPGADTVALCREIVDTCPNLQLLGLMTIGAIARSKA 187
Query: 165 PAMGNPKPHFYLLSE----IARECKLTK----LSMGMTRDFELAIASGATSVRIGSGIFG 216
N F L +A+E L++ LSMGM+ DFE A+ G+ VR+GS IFG
Sbjct: 188 TTAENENEDFLTLKAQRDLVAKELGLSEESLELSMGMSEDFEGAVRLGSNEVRVGSTIFG 247
Query: 217 ERPCQT 222
+RP +
Sbjct: 248 QRPAKA 253
>gi|315443927|ref|YP_004076806.1| pyridoxal phosphate enzyme, YggS family [Mycobacterium sp. Spyr1]
gi|315262230|gb|ADT98971.1| pyridoxal phosphate enzyme, YggS family [Mycobacterium sp. Spyr1]
Length = 279
Score = 201 bits (511), Expect = 8e-50, Method: Composition-based stats.
Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 20/221 (9%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL------RKEW 72
A R + L+ V+K + + G FAE++ QEA K + R++
Sbjct: 25 ESAGRDVAEIELLPVTKFFPASDVLALYRLGCDAFAESRDQEATAKIEDVARVVGSREDT 84
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM------IKQSRFLPVYIQV 126
++ +G +Q NK + +V K + L +++ L V+ Q+
Sbjct: 85 PIRWHMVGRIQRNKARSVAEWAYAAHSVDSVKVVAALERSASTALEEGRRTEPLRVFAQL 144
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKY---QLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+ + + G+ + T+ LC L G+M IPP +P F L +
Sbjct: 145 SLDGDEARGGVDVDATERVDELCAAMDRAGGLTFAGMMAIPPLGADPGEAFARLRQERDR 204
Query: 184 CKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ LS GM+ D E A+ G+T VR+G+ + G RP
Sbjct: 205 VQRDYEQRLGLSAGMSGDLEAAVRHGSTCVRVGTALMGSRP 245
>gi|328881783|emb|CCA55022.1| Hypothetical protein YggS [Streptomyces venezuelae ATCC 10712]
Length = 239
Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats.
Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R ++ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAENLARVEERIAAACAAAGRAREEVTLIVVTKTYPASDVRILHGLGVRNVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ D+ F+G LQ+NKV +V DV+++V R K S LS K+ R L
Sbjct: 68 P-KAAACADLDLTWHFVGQLQTNKVRSVVGYADVVQSVDRLKLVSSLSAAAEKEGRELGC 126
Query: 123 YIQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP----PAMGNPKPHF 174
+QV E + G+ P+ ++ L ++GLM + P G + F
Sbjct: 127 LLQVALDAESGERGDRGGVAPDGIEELAAAVDAAPGLRLDGLMTVAPLAGPYAGRQRAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +++ + T+ +S GM+ D E A+A+GAT VR+G+ + G RP
Sbjct: 187 DRLMDLSTALRATRPAANMVSAGMSADLEEAVAAGATHVRVGTAVLGVRP 236
>gi|257459425|ref|ZP_05624534.1| pyridoxal phosphate enzyme, YggS family [Campylobacter gracilis
RM3268]
gi|257442850|gb|EEV17984.1| pyridoxal phosphate enzyme, YggS family [Campylobacter gracilis
RM3268]
Length = 212
Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats.
Identities = 65/218 (29%), Positives = 114/218 (52%), Gaps = 16/218 (7%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L ++IE + A V LVAVSK V + ++R S GQ+ F EN++QE K+K
Sbjct: 2 RLDEILKRIEAAKAGAG----EVQLVAVSKNVGTDEVRELYSQGQIAFGENRVQELKRKS 57
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFD-VIETVSREKTASLLSLEMIKQSRFLPVYI 124
LR E ++ FIG+LQSNK++++++L + ++ + + A ++ + + L +
Sbjct: 58 ELLR-ELPLKWHFIGTLQSNKINQLIALRPTLWQSCNSCELALAVNKRL---NYPLDTLL 113
Query: 125 QVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEI 180
++N E K+G+ N ++F+ + ++ LN+ G+M I + P F EI
Sbjct: 114 EINAAGESSKTGLDKNRAVEEFLRIKQECKNLNLIGVMSIGAHVSEPAQIARSFEATREI 173
Query: 181 AREC---KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
SMGM+ DFELAI G+ +R+G ++
Sbjct: 174 FDALVPHGARICSMGMSDDFELAIKCGSNMIRLGRILY 211
>gi|227503286|ref|ZP_03933335.1| alanine racemase [Corynebacterium accolens ATCC 49725]
gi|227075789|gb|EEI13752.1| alanine racemase [Corynebacterium accolens ATCC 49725]
Length = 232
Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats.
Identities = 60/229 (26%), Positives = 103/229 (44%), Gaps = 16/229 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L K+ I A RP S L+ V+K ++ I + G AEN+ QEA+
Sbjct: 8 LADNLAATKEHISAIAAEHDRP--SPQLLVVTKFHPAEDIALLAELGVEDVAENREQEAR 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASL------LSLEMIKQ 116
K L + ++ IG +Q+ K + + + +V K A+ L+ E ++
Sbjct: 66 AKAQELDQ---LRFHMIGQIQTKKANHVARWATSVHSVDSVKLANALDRGVSLAKERGQR 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
LP++IQV+ + + G++ + + + L GLM +PP + + F
Sbjct: 123 ENNLPIFIQVSADGDTSRGGVVREELDEVIEAVEAAEHLEFAGLMVVPPLDADAQEVFST 182
Query: 177 LSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ + KLS GM+ D + AIA+G VR+G+ I G+RP
Sbjct: 183 VRADVDRLSERLGRQLKLSAGMSADMDAAIAAGTDIVRVGTSIMGKRPV 231
>gi|217034324|ref|ZP_03439740.1| hypothetical protein HP9810_491g17 [Helicobacter pylori 98-10]
gi|216943209|gb|EEC22676.1| hypothetical protein HP9810_491g17 [Helicobacter pylori 98-10]
Length = 222
Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats.
Identities = 73/220 (33%), Positives = 107/220 (48%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 SQRIDTLIAKIEKARIAYSR-HHIVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETV-SREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ ++SL + K A + L
Sbjct: 64 KMRSL-EHLPLEWHMIGSLQENKINALLSLKSALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG+MP +T + + L ++GLMCI + + F
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKHLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|323356254|gb|EGA88058.1| YBL036C-like protein [Saccharomyces cerevisiae VL3]
Length = 247
Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 65/234 (27%), Positives = 98/234 (41%), Gaps = 24/234 (10%)
Query: 3 LGNKLQVFKQKIENSAI--LAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
L + + ++ + A + L+ VSK+ + I++ G F EN +QE
Sbjct: 15 LIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQE 74
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIK--- 115
+K L D++ FIG LQ+NK ++ V +ET+ K A L+ K
Sbjct: 75 LIEKAKLLPD--DIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQP 132
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPN----QTKDFVILCRQKYQLNVEGLMCIPP-----A 166
+ +Q+NT E QKSG+ + DF L + + + GLM I
Sbjct: 133 DCNPILCNVQINTSREDQKSGLNNEAEIFEVIDFF-LSEECKYIKLNGLMTIGSWNVSHE 191
Query: 167 MGNPKPHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIF 215
F L E ++ KLSMGM+ DF AI G VRIG+ IF
Sbjct: 192 DSKENRDFATLVEWKKKIDAKFGTSLKLSMGMSADFREAIRQGTAEVRIGTDIF 245
>gi|157164475|ref|YP_001466918.1| hypothetical protein CCC13826_0125 [Campylobacter concisus 13826]
gi|112800291|gb|EAT97635.1| pyridoxal phosphate enzyme, YggS family [Campylobacter concisus
13826]
Length = 212
Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 18/217 (8%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ +KIEN V+LVAVSK V ++R + GQ F EN++QE KK +
Sbjct: 5 LKDLLEKIEN-------LSKDVTLVAVSKNVTCTEVRELYAQGQRNFGENRVQELAKKEL 57
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L+ D++ IG LQ+NK+++++SL V+ ++ + A + + S L +Q
Sbjct: 58 ELQNFTDIKWHMIGRLQNNKINQMISLKPVLWQSCDSFERAVEVDKRL---SYKLDTLLQ 114
Query: 126 VNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIA 181
+N+ E K G+ + + +N++G+M I + PK F L +I
Sbjct: 115 INSADEDTKQGVSVANATEIYERIQSECKNINLKGVMSIGAHVDEPKEVQKSFELTYKIY 174
Query: 182 RECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
K + SMGM+ DFELAI SG+ +R+G+ ++
Sbjct: 175 ESLKPKGASICSMGMSSDFELAIKSGSNMIRLGTMLY 211
>gi|310796209|gb|EFQ31670.1| YggS family pyridoxal phosphate enzyme [Glomerella graminicola
M1.001]
Length = 268
Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 74/249 (29%), Positives = 106/249 (42%), Gaps = 39/249 (15%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC--GQVIFAENKLQ 59
+L ++LQ ++++ +A+ A R V LVAVSK+ + I QV F EN Q
Sbjct: 17 ALISQLQAVQERV--AAVAAGRN---VRLVAVSKLKPANDILALHQATPPQVHFGENYAQ 71
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMIKQS 117
E +K L + +Q FIG LQS ++ + +V K A LL+ +
Sbjct: 72 ELGQKAEMLPR--SIQWHFIGGLQSTHAKKLAKIPNLFCVSSVDTLKKAQLLNAARAELM 129
Query: 118 ------------RFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCR-QKYQLNVEGLMCI 163
L V++QVNT E KSG+ P +T + L + GLM I
Sbjct: 130 SSPPDDGGAAPVEPLGVHVQVNTSGEESKSGVAPGPETVALCRAVETECPALRLLGLMTI 189
Query: 164 -------PPAMGNPKPHFYLLSEIAR-------ECKLTKLSMGMTRDFELAIASGATSVR 209
N F L + +LSMGM+ DFE A+ G+ VR
Sbjct: 190 GAIARSKATTAENENEDFLCLRAQRELVAGELGLERELELSMGMSEDFEGAVRLGSGEVR 249
Query: 210 IGSGIFGER 218
+GS IFGER
Sbjct: 250 VGSTIFGER 258
>gi|269121913|ref|YP_003310090.1| alanine racemase domain protein [Sebaldella termitidis ATCC 33386]
gi|268615791|gb|ACZ10159.1| alanine racemase domain protein [Sebaldella termitidis ATCC 33386]
Length = 223
Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 16/222 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + I + V ++ V+K D ++ + ++ G F ENK Q +
Sbjct: 8 IIENYSKIENDI----KKYSPYPEKVKILFVTKYFDIEEHQKIVNMGFNYFGENKAQLFR 63
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + +++ FIG LQ NK+ I+ ++I ++ ++ + + R + V
Sbjct: 64 DKIKTI-DNPELRWDFIGRLQKNKIKYIIKRVNLIHSIDTISLLEEVNEKACEIGRKVDV 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
IQVN +E K+G ++ D + + +N+ GLM + P + + +F E
Sbjct: 123 LIQVNVSHEETKTGFHVSELSDVFKV--RADNINIRGLMTMAPLTDDESELRKYFRETFE 180
Query: 180 IARE------CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + L +LSMGM+ D++ A+ GAT VRIGS +F
Sbjct: 181 VKNDINKKYNLNLDELSMGMSNDYKEALMEGATIVRIGSKLF 222
>gi|116328682|ref|YP_798402.1| PLP dependent enzyme [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116330661|ref|YP_800379.1| PLP dependent enzyme [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|116121426|gb|ABJ79469.1| PLP dependent enzyme [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116124350|gb|ABJ75621.1| PLP dependent enzyme [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 222
Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats.
Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 19/229 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M + Q +++ RP++ +L+AVSK +K++ A++ G + F EN++QE
Sbjct: 1 MGIREHYQKIYAELQKL-----RPENPPTLIAVSKFQSLEKVKEAVNAGILHFGENRIQE 55
Query: 61 AKKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
+K+ K+ + L IG +QS + ++ + V + L K+ +
Sbjct: 56 GIEKFSEWLRNKDTSLILHHIGPVQSGTLRKLFLGYSYAHGVGAMGIVNELLNRAKKEQK 115
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL-----NVEGLMCIPPAMGNP--- 170
+ ++Q N E K G+ + K+ + + +QK L +EGLM + P+ G+P
Sbjct: 116 NIRYFLQANLTGEDTKHGV---ERKELIGILKQKENLSNAYCKLEGLMVMGPSDGDPTKT 172
Query: 171 KPHFYLLSEIARE-CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
K F LS+I ++ KLSMGM+ D+++AI G+ VRIGS IFGER
Sbjct: 173 KEVFRELSKIRKDYIPEAKLSMGMSGDYKIAIEEGSDFVRIGSAIFGER 221
>gi|148273036|ref|YP_001222597.1| hypothetical protein CMM_1855 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830966|emb|CAN01911.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 243
Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats.
Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 10/222 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + + + + A R D V+ + V+K +R + G E++ QEA+
Sbjct: 24 LAERWASVQADVADGIRAAGRRPDEVTTIVVTKFQPVSLLRALVELGVRDLGESRHQEAQ 83
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L V F+G LQ K ++ VI +V R L+ + + V
Sbjct: 84 GKAAELEGT-GVAWHFVGQLQGKKARQVRRYASVIHSVDRPSLVDALASDEQET----RV 138
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR 182
++QVN + + G+ P + + + V G+M + P G P+ F L I+
Sbjct: 139 FLQVNLTDDDGRGGVRPAEAEALAEHAAAASGIRVLGVMAVAPDDGEPRRAFARLRGISD 198
Query: 183 EC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ +S GM+ D A+ GAT +RIGS I G+RP
Sbjct: 199 DVRRILPGARAISAGMSGDLREALLEGATHLRIGSAITGKRP 240
>gi|193785623|dbj|BAG51058.1| unnamed protein product [Homo sapiens]
Length = 235
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 63/191 (32%), Positives = 91/191 (47%), Gaps = 20/191 (10%)
Query: 51 VIFAENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKT 105
F EN +QE +K L +++ FIG LQ V+++ V ++ETV K
Sbjct: 23 RTFGENYVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKL 82
Query: 106 ASLLSLEMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMC 162
A ++ ++ L V +Q+NT E K G+ P++T V + L GLM
Sbjct: 83 ADKVNSSWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMT 142
Query: 163 IPPAMGN----PKPHFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRI 210
I + P P F LL + E KL +LSMGM+ DF+ A+ G+T+VRI
Sbjct: 143 IGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRI 202
Query: 211 GSGIFGERPCQ 221
GS IFGER
Sbjct: 203 GSTIFGERDYS 213
>gi|328950415|ref|YP_004367750.1| protein of unknown function UPF0001 [Marinithermus hydrothermalis
DSM 14884]
gi|328450739|gb|AEB11640.1| protein of unknown function UPF0001 [Marinithermus hydrothermalis
DSM 14884]
Length = 214
Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 69/196 (35%), Positives = 100/196 (51%), Gaps = 8/196 (4%)
Query: 26 DSVSLVAVSKMVDSKKI-RVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
DSV LVAV+K ++I R L+ G E+++QEA+ K L V+ FIG LQ
Sbjct: 22 DSVRLVAVTKGRTLEEIQRCVLAYGNFPLGESRVQEARPKMEALS---GVEWHFIGPLQR 78
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NKV + F ++ ++ + A L+ ++ V +QVN E QK G+ + D
Sbjct: 79 NKVKFMRP-FALVHSIDSVRLAQALARRAAREGWRARVLLQVNVAREPQKHGVFVEELAD 137
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECKLTKLSMGMTRDFELAI 201
V R+ L + GLM + P P+ F LS +A L + SMGMT DFE+A+
Sbjct: 138 AVARVRELEALELVGLMTMAPYTERPEEVRWVFRELSRLADRYNLAERSMGMTGDFEVAV 197
Query: 202 ASGATSVRIGSGIFGE 217
GAT VR+G +F E
Sbjct: 198 EEGATLVRVGRALFEE 213
>gi|15214403|sp|Q9CCE2|Y919_MYCLE RecName: Full=UPF0001 protein ML0919
Length = 257
Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 51/237 (21%), Positives = 94/237 (39%), Gaps = 22/237 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ ++ A R + L+ +SK + + + G E++ QEA
Sbjct: 15 LMHALATVRSRLAAASQAAGRNVGEIELLPISKFFPATDVAILSRLGCRSVGESRAQEAS 74
Query: 63 KKWIPLRKEWD--------VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM- 113
K + + +G +Q NKV + ++ + + L +
Sbjct: 75 TKAAEFAELLGVSREEKSSIHWHMVGQIQRNKVRSLAQWAHTAHSIDSLQLVAALDRAVA 134
Query: 114 -----IKQSRFLPVYIQVNTGYEIQKSGI---MPNQTKDFVILCRQKYQLNVEGLMCIPP 165
++ + L VY+Q++ +I + G+ P + L + GLM IPP
Sbjct: 135 AALAGGRREQPLQVYVQISLDGDISRGGVNVTAPGAVDRVCAQVEESKSLELVGLMGIPP 194
Query: 166 AMGNPKPHFYLLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
NP F L + LS GM+ DFE+A+ G+T VR+G+ + G
Sbjct: 195 LGWNPDQAFEQLRLEHRRVLRSHPDAIGLSAGMSNDFEIAVKHGSTCVRVGTALLGP 251
>gi|188527840|ref|YP_001910527.1| hypothetical protein HPSH_05430 [Helicobacter pylori Shi470]
gi|188144080|gb|ACD48497.1| hypothetical protein HPSH_05430 [Helicobacter pylori Shi470]
Length = 222
Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 72/220 (32%), Positives = 107/220 (48%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 SQRIDTLIAKIEKARTAYSR-HHIVKIVAVSKNASLEAIQNYYNCSQRAFGENKVQDLKI 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETV-SREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ ++SL + K A + L
Sbjct: 64 KMHSL-EHLPLEWHMIGSLQENKINALLSLKLALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG+MP +T + + +L ++GLMCI + + F
Sbjct: 123 LLQVNSAYEESKSGVMPEETLEIYSQISETCKRLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDRLKNASVLSMGMSDDFELAIACGANLLRIGSFLFKE 222
>gi|283458369|ref|YP_003362992.1| hypothetical protein RMDY18_13400 [Rothia mucilaginosa DY-18]
gi|283134407|dbj|BAI65172.1| predicted enzyme with a TIM-barrel fold [Rothia mucilaginosa DY-18]
Length = 278
Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 65/257 (25%), Positives = 96/257 (37%), Gaps = 39/257 (15%)
Query: 3 LGNKLQVFKQKIENSAI--LAKRP--KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
L + ++I + A R V LV V+K + L G +F EN+
Sbjct: 21 LLQNYRRVLERIRAAEQDHSAVRTEVSAPVQLVTVTKFFPASDAAALLDGGVTLFGENRD 80
Query: 59 QEAKKKWIPL------RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
QEA K L R+ FIG LQ+NK +V + +V R A L+
Sbjct: 81 QEASAKARELAAYCAQREVQPPHWAFIGQLQTNKAKSVVKYASSVHSVDRPSLADALAKA 140
Query: 113 MIKQ----------------SRFLPVYIQVNTGY--------EIQKSGIMPNQTKDFVIL 148
Q L +QV+ E + G ++ + V
Sbjct: 141 YANQLSRFEAGEAPAPAAAEHGALTCLVQVSLAEVATAGHAAEGARGGTSASELLELVER 200
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA-----RECKLTKLSMGMTRDFELAIAS 203
L G+M + P NP F L +A + T++S GM+ D E A+
Sbjct: 201 IENHEHLRCGGVMAVAPLGMNPDEAFEKLYGLASLVREQVPHATEISAGMSGDLEAAVRW 260
Query: 204 GATSVRIGSGIFGERPC 220
G+T VR+GS I G+RP
Sbjct: 261 GSTCVRVGSDIMGKRPA 277
>gi|119583766|gb|EAW63362.1| proline synthetase co-transcribed homolog (bacterial), isoform
CRA_c [Homo sapiens]
Length = 236
Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 63/191 (32%), Positives = 91/191 (47%), Gaps = 20/191 (10%)
Query: 51 VIFAENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKT 105
F EN +QE +K L +++ FIG LQ V+++ V ++ETV K
Sbjct: 24 RTFGENYVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKL 83
Query: 106 ASLLSLEMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMC 162
A ++ ++ L V +Q+NT E K G+ P++T V + L GLM
Sbjct: 84 ADKVNSSWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMT 143
Query: 163 IPPAMGN----PKPHFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRI 210
I + P P F LL + E KL +LSMGM+ DF+ A+ G+T+VRI
Sbjct: 144 IGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRI 203
Query: 211 GSGIFGERPCQ 221
GS IFGER
Sbjct: 204 GSTIFGERDYS 214
>gi|15827439|ref|NP_301702.1| DNA-binding protein [Mycobacterium leprae TN]
gi|221229916|ref|YP_002503332.1| putative DNA-binding protein [Mycobacterium leprae Br4923]
gi|13092989|emb|CAC31300.1| possible DNA-binding protein [Mycobacterium leprae]
gi|219933023|emb|CAR71014.1| possible DNA-binding protein [Mycobacterium leprae Br4923]
Length = 260
Score = 199 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 51/237 (21%), Positives = 94/237 (39%), Gaps = 22/237 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ ++ A R + L+ +SK + + + G E++ QEA
Sbjct: 18 LMHALATVRSRLAAASQAAGRNVGEIELLPISKFFPATDVAILSRLGCRSVGESRAQEAS 77
Query: 63 KKWIPLRKEWD--------VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM- 113
K + + +G +Q NKV + ++ + + L +
Sbjct: 78 TKAAEFAELLGVSREEKSSIHWHMVGQIQRNKVRSLAQWAHTAHSIDSLQLVAALDRAVA 137
Query: 114 -----IKQSRFLPVYIQVNTGYEIQKSGI---MPNQTKDFVILCRQKYQLNVEGLMCIPP 165
++ + L VY+Q++ +I + G+ P + L + GLM IPP
Sbjct: 138 AALAGGRREQPLQVYVQISLDGDISRGGVNVTAPGAVDRVCAQVEESKSLELVGLMGIPP 197
Query: 166 AMGNPKPHFYLLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
NP F L + LS GM+ DFE+A+ G+T VR+G+ + G
Sbjct: 198 LGWNPDQAFEQLRLEHRRVLRSHPDAIGLSAGMSNDFEIAVKHGSTCVRVGTALLGP 254
>gi|119583767|gb|EAW63363.1| proline synthetase co-transcribed homolog (bacterial), isoform
CRA_d [Homo sapiens]
Length = 265
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 66/241 (27%), Positives = 100/241 (41%), Gaps = 63/241 (26%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 46 LGVGCALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 103
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
+QE +K L +++ FIG LQ V++++
Sbjct: 104 YVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMG--------------------- 142
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN--- 169
K G+ P++T V + L GLM I +
Sbjct: 143 --------------------KHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQ 182
Query: 170 -PKPHFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
P P F LL + E KL +LSMGM+ DF+ A+ G+T+VRIGS IFGER
Sbjct: 183 GPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFGERDY 242
Query: 221 Q 221
Sbjct: 243 S 243
>gi|162447564|ref|YP_001620696.1| hypothetical protein ACL_0704 [Acholeplasma laidlawii PG-8A]
gi|161985671|gb|ABX81320.1| conserved hypothetical protein [Acholeplasma laidlawii PG-8A]
Length = 197
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 6/186 (3%)
Query: 29 SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
++VA SK +++ + G F EN +Q K L D+ IG LQSNK
Sbjct: 10 TIVA-SKYFSIDEMKKIYNLGARHFGENYVQSLLDKKSSLNDLKDISWHLIGHLQSNKTK 68
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
I++ D + T+ K A ++ + L +IQ+N K GI+ +F+
Sbjct: 69 LIINEIDYLHTLDSIKLAGMIQKYR---NTPLNCFIQINLEKNDNKEGILIENLDEFIQE 125
Query: 149 CRQKYQLNVEGLMCIPPAMG--NPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT 206
++ ++N+ G M I + F L+++ + L SMGM+ D+ELAI +
Sbjct: 126 IKKYDKINLIGFMAIGAIDDVVRTEEIFKTLNDLKMKYNLNYTSMGMSNDYELAIKYHSD 185
Query: 207 SVRIGS 212
+RIGS
Sbjct: 186 FLRIGS 191
>gi|306836482|ref|ZP_07469455.1| YggS family pyridoxal phosphate enzyme [Corynebacterium accolens
ATCC 49726]
gi|304567645|gb|EFM43237.1| YggS family pyridoxal phosphate enzyme [Corynebacterium accolens
ATCC 49726]
Length = 232
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 61/231 (26%), Positives = 106/231 (45%), Gaps = 20/231 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L K+ I A RP S L+ V+K ++ I + G AEN+ QEA+
Sbjct: 8 LADNLAATKEHISAIAAEHDRP--SPQLLVVTKFHPAEDIALLAELGVEDVAENREQEAR 65
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASL------LSLEMIKQ 116
K L + ++ IG +Q+ K + + + +V K A+ L+ E ++
Sbjct: 66 AKAQKLDQ---LRFHMIGQIQTKKANHVARWAASVHSVDSVKLANALDRGVSLAKERGQR 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
LP++IQV+ + + G++ + + + L GLM +PP + + F
Sbjct: 123 ESNLPIFIQVSADGDTSRGGVVREELDEVIEAVEAAEHLEFAGLMVVPPLDADAQEVFST 182
Query: 177 LSEIARECKLTK-------LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ A +L++ LS GM+ D + AIA+G VR+G+ I G+RP
Sbjct: 183 VR--ADVVRLSERLGRQLKLSAGMSADMDAAIAAGTDIVRVGTSIMGKRPV 231
>gi|237749781|ref|ZP_04580261.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
gi|229374646|gb|EEO25037.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
Length = 222
Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats.
Identities = 66/221 (29%), Positives = 108/221 (48%), Gaps = 10/221 (4%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + IE R KDS+ L+AVSK D +I+ A SCGQ+ F ENK+Q+
Sbjct: 2 ICENLAKTLESIEKIKERYNR-KDSIKLIAVSKYSDIDEIQQAFSCGQIAFGENKVQDLM 60
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFLP 121
K L +++ FIG+LQ NK++ ++ + + ++ K A L ++++ +
Sbjct: 61 AKSRSL-STHNIEWHFIGTLQENKINMLIQIKPALLHSLHSLKLAHALQKRLMREDYKMK 119
Query: 122 VYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLL 177
+QVN+ E KSG ++ + + + GLMC+ + + F
Sbjct: 120 ALLQVNSANEDSKSGFSLESAFSSYLEILETCPNIELNGLMCMGANSDDKALIEKGFLQT 179
Query: 178 SEIARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ K LSMGM+ D+E+AIA G+ +RIGS IF
Sbjct: 180 QNLYERLKPYNANILSMGMSSDYEIAIACGSNHLRIGSSIF 220
>gi|164657386|ref|XP_001729819.1| hypothetical protein MGL_2805 [Malassezia globosa CBS 7966]
gi|159103713|gb|EDP42605.1| hypothetical protein MGL_2805 [Malassezia globosa CBS 7966]
Length = 768
Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats.
Identities = 72/283 (25%), Positives = 101/283 (35%), Gaps = 69/283 (24%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQE 60
+ ++ +++I + PK L+ VSK+ + A GQ F EN +QE
Sbjct: 246 DIEGRIYRIQRRITETCQQQNLPKK-PRLLVVSKLQPPSALMAAYDRTGQRHFGENYVQE 304
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIK--- 115
+K L D+Q FIG LQSNK + V +++V EK A L + K
Sbjct: 305 LIEKARVLPD--DIQWHFIGGLQSNKAKLLAAVPNLYAVQSVDSEKLALGLEKTLAKPEH 362
Query: 116 ---QSRFLPVYIQVNTGYEIQKSGIMPNQTK------------DFVILCR-QKYQLNVEG 159
+ L VYIQVNT E KSG+ + G
Sbjct: 363 ASLRKAPLYVYIQVNTSGEAGKSGVPAMDAPWDGNSSNKPPLLSLAQTIMLACPHMRFSG 422
Query: 160 LMCIPPAM---------GNPKPHFYLLSE----IARECKLT------------------- 187
LM I P F L + +A+ +
Sbjct: 423 LMTIGALTNSQSVQGHEERENPDFLALVKSRKYLAQALEQDSEFQAKLSNTSFWAPQGNL 482
Query: 188 ------------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+LSMGM+ D AIA G+T VRIG+ FG R
Sbjct: 483 QNVYGTLREHDLELSMGMSADMSSAIAMGSTCVRIGNDSFGAR 525
>gi|255326234|ref|ZP_05367320.1| pyridoxal phosphate enzyme, YggS family [Rothia mucilaginosa ATCC
25296]
gi|255296688|gb|EET76019.1| pyridoxal phosphate enzyme, YggS family [Rothia mucilaginosa ATCC
25296]
Length = 277
Score = 199 bits (506), Expect = 3e-49, Method: Composition-based stats.
Identities = 66/257 (25%), Positives = 99/257 (38%), Gaps = 39/257 (15%)
Query: 3 LGNKLQVFKQKIENSAI--LAKRPKDS--VSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
L + ++I + A R ++S V LV V+K + L G +F EN+
Sbjct: 20 LLQNYRRVLERIRAAEQDHSAVRTEESAPVQLVTVTKFFPASDAAALLDGGVSLFGENRD 79
Query: 59 QEAKKKWIPL------RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
QEA K L R+ FIG LQ+NK +V + +V R A L+
Sbjct: 80 QEASAKARELAAYCAQREVQPPHWAFIGQLQTNKAKSVVKYASSVHSVDRPSLADALAKA 139
Query: 113 MIKQ----------------SRFLPVYIQVNTGY--------EIQKSGIMPNQTKDFVIL 148
Q L +QV+ E + G ++ + V
Sbjct: 140 YANQLSRFEAGEAPAPAAAEQGALTCLVQVSLAEVATAGHAAEGARGGTSASELLELVER 199
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA-----RECKLTKLSMGMTRDFELAIAS 203
L G+M + P NP F L +A + T++S GM+ D E A+
Sbjct: 200 IENHEHLRCGGVMAVAPLGMNPDAAFEKLYGLASLVREQVPHATEISAGMSGDLEAAVRW 259
Query: 204 GATSVRIGSGIFGERPC 220
G+T VR+GS I G+RP
Sbjct: 260 GSTCVRVGSDIMGKRPA 276
>gi|315604725|ref|ZP_07879788.1| alanine racemase domain protein [Actinomyces sp. oral taxon 180
str. F0310]
gi|315313737|gb|EFU61791.1| alanine racemase domain protein [Actinomyces sp. oral taxon 180
str. F0310]
Length = 233
Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats.
Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 20/234 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVAL----SCGQ-VIFAE 55
MS+ + + + +I+++ R DSV+L K ++ R A G ++
Sbjct: 1 MSIPDAIAAARDRIDHATSACGR-TDSVTLELAVKTRTPEECRAAATALRDAGLPILLGH 59
Query: 56 NKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
N++QEA+ +R+ ++ IG LQSNK++ +S D IE++ A+ +
Sbjct: 60 NRVQEARSTVDAIREVPGARVHLIGPLQSNKINHALSCVDAIESLDSPALAAKIDARASV 119
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKP 172
+ LPV+++VN E K G P+ + L + G M + P + +
Sbjct: 120 R---LPVFVEVNVSGEATKHGCAPSDVAALINAVEASAHLQLAGFMTVGLNSPVEADVRA 176
Query: 173 HFYLLS----EIARECK----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L E ARE +LSMGM+RD E AIA GAT VR+G+ +FGER
Sbjct: 177 AYARLRTIRGEAARELGVGEEALELSMGMSRDLEWAIAEGATIVRLGTAVFGER 230
>gi|326932746|ref|XP_003212474.1| PREDICTED: proline synthase co-transcribed bacterial homolog
protein-like [Meleagris gallopavo]
Length = 215
Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats.
Identities = 65/190 (34%), Positives = 91/190 (47%), Gaps = 20/190 (10%)
Query: 53 FAENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTAS 107
F EN +QE +K L +++ FIG LQ + V+++ V ++ETV K A
Sbjct: 3 FGENYVQELLEKASDSRILSSCPEIKWHFIGHLQKSNVNKLIAVPNLFMLETVDSVKLAD 62
Query: 108 LLSLEMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCIP 164
++ K+ L V +QVNT E K G+ P T V + L GLM I
Sbjct: 63 RVNSSWQKKGSPQKLKVMVQVNTSGEDSKHGLPPRDTAAAVEHVINKCPSLEFVGLMTIG 122
Query: 165 PAMGN----PKPHFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRIGS 212
+ P P F +L + +E KL +LSMGM+ DF+ AI G+T+VRIGS
Sbjct: 123 SIGHDLSKGPNPDFQVLLSLRQEVCEKLNLPIEKVELSMGMSTDFQHAIEVGSTNVRIGS 182
Query: 213 GIFGERPCQT 222
IFGER
Sbjct: 183 TIFGERDYSN 192
>gi|94985526|ref|YP_604890.1| hypothetical protein Dgeo_1426 [Deinococcus geothermalis DSM 11300]
gi|94555807|gb|ABF45721.1| Protein of unknown function UPF0001 [Deinococcus geothermalis DSM
11300]
Length = 219
Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats.
Identities = 70/225 (31%), Positives = 101/225 (44%), Gaps = 17/225 (7%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR-VALSC-----GQVIFA 54
MSL L + +A A RP +SV LVAV+K D + IR L G
Sbjct: 1 MSLPEVLAGIR----AAAERAGRPAESVRLVAVTKGHDLEAIRTQVLRYADLQPGGFPLG 56
Query: 55 ENKLQEAKKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
EN+ QE + K + FIG LQ NKV + ++ ++ + A ++
Sbjct: 57 ENRAQELRDKVAEWSALGWPSAEWHFIGPLQLNKVKYLRP-VRLVHSLEDVRQAQAIADA 115
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-- 170
K + V +Q++ G E QK GI P + Q L V GLM + P
Sbjct: 116 AAKWGQAPDVLLQLHNG-EAQKHGIHPADLRRVYAGVMQT-GLKVRGLMVMAPEGDEAAA 173
Query: 171 KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ F ++ A + L +LSMGM+ D+ LAI GAT VR+G +F
Sbjct: 174 RRVFAETAQRAHDLGLPELSMGMSGDYPLAIEQGATLVRVGRSLF 218
>gi|319949991|ref|ZP_08023976.1| alanine racemase domain protein [Dietzia cinnamea P4]
gi|319436344|gb|EFV91479.1| alanine racemase domain protein [Dietzia cinnamea P4]
Length = 242
Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats.
Identities = 56/211 (26%), Positives = 88/211 (41%), Gaps = 16/211 (7%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE-----AKKKWIPLRKEWDVQLRFIG 80
D V LV V+K + G EN++QE V+ +G
Sbjct: 31 DEVDLVVVTKFHPVTDVVHLARLGVRDVGENRVQEAAAKVDDLAAADAGLAASVRWNMVG 90
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR------FLPVYIQVNTGYEIQK 134
+QSNK + + D + +V K A+ L + + LPV +Q++ + +
Sbjct: 91 HIQSNKAAAVAGWADRVHSVDSVKVANGLERGRARAADERDGVTSLPVLLQLSLDGDTSR 150
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-----ARECKLTKL 189
G+ L + GLM +PP G+P HF +E+ + T+
Sbjct: 151 GGVTREDLPALADHVAGLGHLRLAGLMVVPPLSGDPAAHFADAAEVAAALRRQHPHATEF 210
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERPC 220
S GM+ D E AIA+G+T VR+G+ I G RP
Sbjct: 211 SAGMSGDIEEAIAAGSTCVRVGTAILGPRPV 241
>gi|327398334|ref|YP_004339203.1| hypothetical protein Hipma_0165 [Hippea maritima DSM 10411]
gi|327180963|gb|AEA33144.1| protein of unknown function UPF0001 [Hippea maritima DSM 10411]
Length = 223
Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats.
Identities = 62/236 (26%), Positives = 113/236 (47%), Gaps = 29/236 (12%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + + ++I + V + A +K + +I + G + +N +++
Sbjct: 1 MSIKERTEALLREI----------PEGVIVEAAAKTRTADEILQVIDAGITVIGQNYIKD 50
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNK-----VSEIVSLFDVIETVSREKTASLLSLEMIK 115
+ + + K+ + FIGS+++ K + + ++IET+ + A LS +
Sbjct: 51 LRAVYDKIGKK--AKWHFIGSVKNQKNELFRTKYL-KIINMIETIDSFEDAERLSKKCEA 107
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--- 172
S+ +P+ I++N+ E QKSG+MP+ + + + VEGLM + A P+
Sbjct: 108 ISKVMPILIEINSAEEPQKSGVMPDDAINLIKHISLLKNIRVEGLMTMGKATEEPEDARI 167
Query: 173 HFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+F L +I E K + LSMGMT +++AI GA VRIG+ IFG R
Sbjct: 168 YFKLTKQIFDEVKRLGIDNVEMKYLSMGMTDTYKIAIQEGANIVRIGTAIFGPRKA 223
>gi|50955145|ref|YP_062433.1| hypothetical protein Lxx15220 [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50951627|gb|AAT89328.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 214
Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats.
Identities = 53/214 (24%), Positives = 94/214 (43%), Gaps = 9/214 (4%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
++ + ++A A R D ++ + V+K + +R S G EN+ QEA++K L
Sbjct: 2 REGVADAARAAGRSPDELTTIVVTKFHPASLVRELASLGVRDVGENRHQEAQEKVSVLAD 61
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
++ F+G LQS K + V+ ++ R L L ++Q+N
Sbjct: 62 -LELTWHFVGQLQSKKARQARRYAGVVHSIDRLSLVDAL---RNDDGTVLGAFVQLNLTD 117
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK----- 185
+ + G+ + V L + G+M + P P F + + +
Sbjct: 118 DPARGGVAGRDLEPLVDHILAAPGLRLLGVMAVAPLDEEPARAFERVRVASERVRALAPE 177
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+S GM++D+ AIA+GAT +RIG+ I G RP
Sbjct: 178 AVAISAGMSQDYREAIAAGATHLRIGTAITGNRP 211
>gi|225619384|ref|YP_002720610.1| hypothetical protein BHWA1_00441 [Brachyspira hyodysenteriae WA1]
gi|225214203|gb|ACN82937.1| hypothetical protein BHWA1_00441 [Brachyspira hyodysenteriae WA1]
Length = 231
Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats.
Identities = 62/225 (27%), Positives = 104/225 (46%), Gaps = 12/225 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVI-FAENKLQEA 61
+ + I + D ++++AVSK I+ LS + E+K Q
Sbjct: 6 ILERYNEISNNINIAKQKYNIEYD-INIIAVSKYSSIDTIKEFLSLDIDLPLGESKAQSL 64
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ + + + + +V+ FIG +QSNKV IV D+I++V + A ++ E +K ++
Sbjct: 65 RDRAGEIAQFKNNVKWHFIGRIQSNKVKYIVRYADLIQSVDSIEIAECINKEALKNNKIQ 124
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
+ +Q N E QK G N D + ++++GLM I N + F L
Sbjct: 125 DILLQFNISDEDQKGGFNLNDYLDVYKNIIKMSNISIKGLMGIGKDSENSLLIEEEFEKL 184
Query: 178 SEIARECK------LTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ I + L+ LSMGM+ D+ELAI G+ +RIGS G
Sbjct: 185 NTIYKSINNQYNNPLSILSMGMSSDYELAIKHGSNMIRIGSSFLG 229
>gi|114778110|ref|ZP_01452997.1| hypothetical protein SPV1_00592 [Mariprofundus ferrooxydans PV-1]
gi|114551528|gb|EAU54082.1| hypothetical protein SPV1_00592 [Mariprofundus ferrooxydans PV-1]
Length = 227
Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats.
Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 8/197 (4%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
D VS++A+SK ++ + GQ F E++ Q + + + D Q IG LQ
Sbjct: 27 DADGVSMLAISKYAPDSAVQALIDQGQRCFGESRPQALRDRALRWP---DCQWHMIGPLQ 83
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NK + + + TA+ ++ + R LPV IQVN + G+ P +
Sbjct: 84 KNKAKYVARHAAMWHSCEDIDTAAAVARHLD--GRRLPVLIQVNIAANPAQHGVNPAALQ 141
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC---KLTKLSMGMTRDFELA 200
F L + GLM + P G+ F + ++ E + LSMGM+ D+ A
Sbjct: 142 TFAAELNAIDGLELRGLMAMAPLDGDVGEAFTAMRDLRDELFGGSVGLLSMGMSHDYRAA 201
Query: 201 IASGATSVRIGSGIFGE 217
+A+GA VR+GS +FG+
Sbjct: 202 VAAGANMVRLGSTLFGD 218
>gi|296221991|ref|XP_002756996.1| PREDICTED: proline synthetase co-transcribed bacterial homolog
protein-like [Callithrix jacchus]
Length = 236
Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats.
Identities = 65/191 (34%), Positives = 91/191 (47%), Gaps = 20/191 (10%)
Query: 51 VIFAENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKT 105
F EN +QE +K L +++ FIG LQ V+++ V ++ETV K
Sbjct: 24 RTFGENYVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMAVPNLFMLETVDSVKL 83
Query: 106 ASLLSLEMIKQSRF--LPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMC 162
A ++ K+ L V +Q+NT E K G+ P++T V L GLM
Sbjct: 84 ADKVNSSWQKKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINTNCPSLEFVGLMT 143
Query: 163 IPPAMGN----PKPHFYLLSEIAREC--KLT------KLSMGMTRDFELAIASGATSVRI 210
I + P P F LL + E KL+ +LSMGM+ DF+ AI G+T+VRI
Sbjct: 144 IGSVGHDLSQGPNPDFQLLLSLREELCKKLSIPADQVELSMGMSMDFQHAIEVGSTNVRI 203
Query: 211 GSGIFGERPCQ 221
GS IFGER
Sbjct: 204 GSTIFGERDYS 214
>gi|6137630|pdb|1CT5|A Chain A, Crystal Structure Of Yeast Hypothetical Protein Ybl036c-
Selenomet Crystal
Length = 256
Score = 198 bits (504), Expect = 5e-49, Method: Composition-based stats.
Identities = 65/241 (26%), Positives = 100/241 (41%), Gaps = 24/241 (9%)
Query: 3 LGNKLQVFKQKIENSAI--LAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
L + + ++ + A + L+ VSK+ + I++ G F EN +QE
Sbjct: 14 LIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQILYDHGVREFGENYVQE 73
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIK--- 115
+K L D++ FIG LQ+NK ++ V +ET+ K A L+ K
Sbjct: 74 LIEKAKLLPD--DIKWHFIGGLQTNKCKDLAKVPNLYSVETIDSLKKAKKLNESRAKFQP 131
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPN----QTKDFVILCRQKYQLNVEGLMCIPP-----A 166
+ +Q+NT +E QKSG+ + DF L + + + GL I
Sbjct: 132 DCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFF-LSEECKYIKLNGLXTIGSWNVSHE 190
Query: 167 MGNPKPHFYLLSEIARECKLT-----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L E ++ KLS G + DF AI G VRIG+ IFG RP +
Sbjct: 191 DSKENRDFATLVEWKKKIDAKFGTSLKLSXGXSADFREAIRQGTAEVRIGTDIFGARPPK 250
Query: 222 T 222
Sbjct: 251 N 251
>gi|319957195|ref|YP_004168458.1| alanine racemase domain protein [Nitratifractor salsuginis DSM
16511]
gi|319419599|gb|ADV46709.1| alanine racemase domain protein [Nitratifractor salsuginis DSM
16511]
Length = 232
Score = 197 bits (503), Expect = 6e-49, Method: Composition-based stats.
Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 10/224 (4%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L L+ Q+IE + I V +V VSK + I GQ F EN++Q+
Sbjct: 11 TLARNLEAVIQRIEAARIKVD-EHHIVKMVVVSKYTAIENIATLYDLGQRAFGENQVQQL 69
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKT-ASLLSLEMIKQSRFL 120
+++ L ++ ++ IG LQ NK+++++ L + A L + + + +
Sbjct: 70 EERVHAL-EDLPLEWHMIGRLQKNKINKLIDLDPFLLQSLDSLDLAEALDKRLEAKEKRM 128
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGN---PKPHFYL 176
+Q+N+ E K+G+ P D ++ ++++ G+M I + + F
Sbjct: 129 ECLLQINSAREESKAGVAPEAAVDVYREIKERFSRIDLRGVMTIGAHTDDKATVRKSFET 188
Query: 177 LSEIARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
I E + SMGM+ DFELAI G+ VRIGS +F E
Sbjct: 189 TRRIFDELQSEGAEICSMGMSGDFELAIECGSNMVRIGSALFAE 232
>gi|325115060|emb|CBZ50616.1| hypothetical protein NCLIV_010840 [Neospora caninum Liverpool]
Length = 326
Score = 197 bits (503), Expect = 6e-49, Method: Composition-based stats.
Identities = 77/311 (24%), Positives = 110/311 (35%), Gaps = 93/311 (29%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDS------------------VSLVAVSKMVDSKKIRV 44
+ LQ + ++ A P S V ++AVSK + +
Sbjct: 12 IRENLQRVRGEVRALASRHAPPSASSPSATSSAATGAAAGRLKVRILAVSKHHPAAAVAA 71
Query: 45 ALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV---SLFDVIETVS 101
A GQ F EN +QE K LR E D++ IG LQSNKV +++ +ETV
Sbjct: 72 AAQAGQRHFGENYVQELVDKAAQLR-ELDLEWHMIGHLQSNKVKQLLTACPRLYAVETVD 130
Query: 102 REKTASLLSLEMI-----KQSRFLPVYIQVNTGYEIQKSGI------MPNQ--------- 141
+K A L+ + L V +QVN E KSG+ P++
Sbjct: 131 SKKLAKTLNDAAAAVLPQRNGAPLRVLVQVNASDEESKSGVRLHANDNPDEKTAGTSGDS 190
Query: 142 -TKDFVI-LCRQKYQLNVEGLMCIPPAMGNPKP-HFYLLSEIA----------------- 181
++ V + L GLM I P F L+++
Sbjct: 191 AVRELVEYIIDSCPHLRFSGLMTIGDPDPERTPGTFAKLAKLRLDLLELPRVRQVFAPRA 250
Query: 182 ---------------------RECKLT----------KLSMGMTRDFELAIASGATSVRI 210
C + +LSMGM+ D AI G+T VRI
Sbjct: 251 ENVHGRAEGKRAVQAEPPEGNEHCGDSDAERDTDERFELSMGMSGDMAEAIKHGSTEVRI 310
Query: 211 GSGIFGERPCQ 221
G+ IFG RP Q
Sbjct: 311 GTAIFGSRPAQ 321
>gi|154175245|ref|YP_001408198.1| hypothetical protein CCV52592_1134 [Campylobacter curvus 525.92]
gi|112802459|gb|EAT99803.1| conserved hypothetical protein [Campylobacter curvus 525.92]
Length = 211
Score = 197 bits (503), Expect = 6e-49, Method: Composition-based stats.
Identities = 57/198 (28%), Positives = 103/198 (52%), Gaps = 11/198 (5%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
++V+LVAVSK V S +++ + GQ +F EN++QE KK L + D++ IG LQ+N
Sbjct: 16 ENVTLVAVSKNVSSTEVKALYAQGQRVFGENRVQELAKKCSELGEFTDIKWHMIGRLQNN 75
Query: 86 KVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
K+++++SL + ++ + AS ++ + + L +Q+N+ E K G+ +
Sbjct: 76 KINQLLSLRPALWQSCDSFERASEVNKRL---NFTLDTLLQINSANEDSKQGVSYENASE 132
Query: 145 FVILC-RQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIAREC---KLTKLSMGMTRDF 197
+ Q +N++G+M I + + F L +I SMGM+ DF
Sbjct: 133 IYMRIKEQCKNINLKGVMSIGAHSDDEREVQKSFELSYKIFENLRAHGAQICSMGMSSDF 192
Query: 198 ELAIASGATSVRIGSGIF 215
LAI G+ +R+GS ++
Sbjct: 193 RLAIKCGSNMIRLGSLLY 210
>gi|288923204|ref|ZP_06417346.1| alanine racemase domain protein [Frankia sp. EUN1f]
gi|288345440|gb|EFC79827.1| alanine racemase domain protein [Frankia sp. EUN1f]
Length = 318
Score = 197 bits (503), Expect = 7e-49, Method: Composition-based stats.
Identities = 66/303 (21%), Positives = 106/303 (34%), Gaps = 87/303 (28%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ--- 59
L ++L V + +I +A A R + ++L+AVSK + + S G FAEN+ Q
Sbjct: 12 LRSRLTVVRDRIVMAARAAGRDPEDLTLIAVSKTWPFEDVVALCSLGVRHFAENREQEAG 71
Query: 60 ---EAKKKWIPLRKEWDVQ----------------------------------------- 75
EA ++ + V
Sbjct: 72 PKVEAVRRVLATLPAPSVAPGPGNAGAGGTPPTGRITLAGPPDGAWFPSRADGLATLGSA 131
Query: 76 -------LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
++G LQ NK + +++V R + A LS + + V IQV+
Sbjct: 132 VRVDVPVWHYVGQLQRNKARSVAGWAHCVQSVDRVRLAETLSRVATESGSTIAVCIQVSL 191
Query: 129 GY----------------------------EIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
++ G P L + L + G+
Sbjct: 192 DRVGDVAVPSGAPVDKAFPTRENSAASPPVTAERGGARPEDVPALAELVARAPGLVLAGV 251
Query: 161 MCIPPAMGNPKPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
M + P P+P F L ++ + T +S GM+ D E AIA GAT +RIG+ +F
Sbjct: 252 MAVAPRGVPPRPAFARLRVVSERLRGDFPEATMVSAGMSSDLEDAIAEGATHLRIGTALF 311
Query: 216 GER 218
GER
Sbjct: 312 GER 314
>gi|311113345|ref|YP_003984567.1| YggS family pyridoxal phosphate enzyme [Rothia dentocariosa ATCC
17931]
gi|310944839|gb|ADP41133.1| YggS family pyridoxal phosphate enzyme [Rothia dentocariosa ATCC
17931]
Length = 273
Score = 197 bits (503), Expect = 7e-49, Method: Composition-based stats.
Identities = 64/255 (25%), Positives = 100/255 (39%), Gaps = 37/255 (14%)
Query: 3 LGNKLQVFKQKIENSAILAK--RPKDS--VSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
L + ++ ++ R + S V LV V+K + + + G IF EN+
Sbjct: 18 LADNYARVMARVRDAEADTSGVRTEHSPTVRLVTVTKFFPASDVAALYTQGVRIFGENRD 77
Query: 59 QEAKKKWIPLRK----EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL--- 111
QEA K LR FIG LQ+NK +V +++V R L+
Sbjct: 78 QEAAPKARALRAIEKPADPAYWTFIGQLQTNKAKSVVKYAHQVQSVDRSSLIDSLAKAYR 137
Query: 112 ------EMIKQSRF-------LPVYIQVNT--------GYEIQKSGIMPNQTKDFVILCR 150
E +Q L IQV+ E + G ++ +
Sbjct: 138 NQVARYEAGEQDAPAALSQGALECLIQVSLEAQATAGHASEGARGGTDQDEILELAERIE 197
Query: 151 QKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGA 205
+ +L G+M + P NP F L E+A+ + ++S GM+ D E AI G+
Sbjct: 198 AQEELRCGGIMAVAPLGANPDESFEKLWELAQGLRAEFPHADQISAGMSADLEAAIRWGS 257
Query: 206 TSVRIGSGIFGERPC 220
T VR+GS I G+R
Sbjct: 258 TCVRVGSDIMGKRDY 272
>gi|328955369|ref|YP_004372702.1| alanine racemase domain protein [Coriobacterium glomerans PW2]
gi|328455693|gb|AEB06887.1| alanine racemase domain protein [Coriobacterium glomerans PW2]
Length = 245
Score = 197 bits (503), Expect = 7e-49, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 112/234 (47%), Gaps = 18/234 (7%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + +++ + + RP+ + L+AVSK VD K+ A+ G +F EN+ QE
Sbjct: 7 ALRERRYAILSRMDRALQRSGRPRKAAQLMAVSKTVDPVKVEAAIRVGYRVFGENRPQEL 66
Query: 62 KKKWIPLR---KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ-- 116
+K L + V+ IG+LQ NK++ ++ I+++S E A +S+ + ++
Sbjct: 67 VRKMNALAPRQELPQVRFDMIGNLQKNKINAVLGRAAYIQSISSESIARAVSVRVEREIA 126
Query: 117 ----SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-- 170
PV ++VN E K+G P + + + R + + G+M + P
Sbjct: 127 ARHMIEPQPVLLEVNVSGETSKAGFAPEELRASMDRLRSLCGIRIAGMMTMAPRAQPTLA 186
Query: 171 KPHFYLLSEIARE-------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ F L E+ E L+ LS GM+ DFE+A+ GAT +R+G +F
Sbjct: 187 RATFRGLRELRDELVKAYDGLDLSVLSCGMSEDFEIALEEGATLIRLGRVVFDP 240
>gi|269219750|ref|ZP_06163604.1| pyridoxal phosphate enzyme, YggS family [Actinomyces sp. oral taxon
848 str. F0332]
gi|269210992|gb|EEZ77332.1| pyridoxal phosphate enzyme, YggS family [Actinomyces sp. oral taxon
848 str. F0332]
Length = 299
Score = 197 bits (503), Expect = 8e-49, Method: Composition-based stats.
Identities = 65/240 (27%), Positives = 109/240 (45%), Gaps = 23/240 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + + K+ +A A R +++VS++ +K + +++ AL G + N +Q+ +
Sbjct: 52 IAGRWESLRDKVAAAASRAGREENAVSILLAAKFQEPERVAAALRAGGSLIGHNYIQQLE 111
Query: 63 KKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL--------- 111
+ L + ++ IG +Q+NK + + D IETV K A+ L
Sbjct: 112 EGERALTELGAPFHRVHVIGHVQANKAGKAIRAADCIETVDSPKLAARLDRLQGERISAG 171
Query: 112 EMIKQSRFL---PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG 168
E+ K L V IQVN+ + G+ P+ D L + GLM I
Sbjct: 172 ELRKDGSPLGPFDVMIQVNSAGSESQHGVDPSGVVDLAGAVADLPNLRLVGLMLIGANTD 231
Query: 169 NPKP---HFYLLSEIARECKL------TKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + E+ + T+LSMGMT D E+AIA G+T VRIG+ +FG RP
Sbjct: 232 DVAAVAASHARVRELRDAVQAAGVASCTELSMGMTGDMEIAIAEGSTEVRIGTAVFGPRP 291
>gi|152967138|ref|YP_001362922.1| alanine racemase domain protein [Kineococcus radiotolerans
SRS30216]
gi|151361655|gb|ABS04658.1| alanine racemase domain protein [Kineococcus radiotolerans
SRS30216]
Length = 238
Score = 197 bits (503), Expect = 8e-49, Method: Composition-based stats.
Identities = 59/207 (28%), Positives = 90/207 (43%), Gaps = 11/207 (5%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
+++LVAV+K + +R+ G EN+ QEA K L D+ FIG +Q
Sbjct: 29 DPGTLTLVAVTKFFPASDVRLLAGLGVRDAGENRDQEASAKAAELADLPDLHWHFIGQVQ 88
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY------EIQKSGI 137
+NKV +V + +V R + A L R L ++QV+ + + G
Sbjct: 89 TNKVRSVVRYAGSVHSVDRVRLADALGRAAAGAGRELGCFVQVDLAEALGLPADSGRGGA 148
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAREC-----KLTKLSMG 192
+ L + GLM + P P F L+ A+ +LS G
Sbjct: 149 AGEEVLRVADAVAGADALRLRGLMAVAPLGVEPAAAFDALARTAQRVREHHPGALELSAG 208
Query: 193 MTRDFELAIASGATSVRIGSGIFGERP 219
M+ D E A+A+GAT +R+GS I G RP
Sbjct: 209 MSGDLEQAVAAGATHLRVGSAILGSRP 235
>gi|52353469|gb|AAU44036.1| unknown protein [Oryza sativa Japonica Group]
Length = 191
Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats.
Identities = 64/220 (29%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + + +A + R +SV +VAVSK IR G F EN +QE K
Sbjct: 14 LRSVLSRAQQAAARSGRAPESVRVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELIDKAS 73
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FLPV 122
L + D++ FIG+LQSNK + V D++E+V +K A+ L + R L V
Sbjct: 74 QLPE--DIEWHFIGNLQSNKARALLAGVPNLDMVESVDDQKIANRLDRVVADLGRKPLKV 131
Query: 123 YIQ--VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+Q N E+ K +P +
Sbjct: 132 LVQALANCRKEVCKELGIPEEQ-------------------------------------- 153
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+LSMGM+ DFE AI G+T+VR+GS IFG R
Sbjct: 154 ------CELSMGMSADFEQAIEMGSTNVRVGSTIFGAREY 187
>gi|257067989|ref|YP_003154244.1| pyridoxal phosphate enzyme, YggS family [Brachybacterium faecium
DSM 4810]
gi|256558807|gb|ACU84654.1| pyridoxal phosphate enzyme, YggS family [Brachybacterium faecium
DSM 4810]
Length = 252
Score = 197 bits (502), Expect = 8e-49, Method: Composition-based stats.
Identities = 70/235 (29%), Positives = 104/235 (44%), Gaps = 17/235 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC----GQVI-FAENK 57
L +L +++++A A R ++++ +KM +I VA+ G+ + EN+
Sbjct: 18 LAARLDEVLARLDDAAARAGRDSREITVLLATKMRTPPEIAVAIELLRERGRRVAVGENR 77
Query: 58 LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
QE K PL + V FIG LQ+NK ++V+ + I +V R+ A L
Sbjct: 78 AQEISKHADPLLADNGVPRHFIGRLQTNKARDVVAFAETIHSVDRDGIADALERRAETAG 137
Query: 118 RFLPVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KP 172
V +QVNT E K G P V L GLM I + +
Sbjct: 138 VQRDVLVQVNTSGEESKGGFAPTAEAIAPMVQRLLASPVLRPVGLMTIGANTSDAGAVRD 197
Query: 173 HFYLLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LL + + L +LSMGM+ D E+A+ GAT VR+GS IFG RP
Sbjct: 198 SLQLLRRLRDAVREQTGAEHLAELSMGMSGDLEIAVEEGATIVRVGSAIFGARPA 252
>gi|315453855|ref|YP_004074125.1| Alanine racemase domain-containing protein [Helicobacter felis ATCC
49179]
gi|315132907|emb|CBY83535.1| Alanine racemase domain protein [Helicobacter felis ATCC 49179]
Length = 218
Score = 197 bits (502), Expect = 9e-49, Method: Composition-based stats.
Identities = 66/221 (29%), Positives = 110/221 (49%), Gaps = 11/221 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M L +L+ Q IE + + R V L+AVSK ++++ +CGQ F EN +QE
Sbjct: 1 MELKKRLENLLQCIEKARLAYSR-HHIVQLIAVSKNATIEQVQGLYACGQRAFGENYIQE 59
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRF 119
+ K L + ++ +G LQ NK+++++ L + ++ + A ++ +
Sbjct: 60 LQHKSTTL-ENLPLEWHMLGPLQHNKINKLLELKPALLHSLHSLELAQAINTRAKE---P 115
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMG---NPKPHFY 175
L +QVN E QKSG+ + + ++ +++++GLM I P G + F
Sbjct: 116 LKALLQVNIAGETQKSGVSAERALEIYAQIQETCPKISLQGLMVIGPLGGMEAQNEKVFS 175
Query: 176 LLSEIAREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + LSMGM+ DFELAIA GA VRIGS +F
Sbjct: 176 QAKNLFDKLPDAKVLSMGMSGDFELAIAYGANLVRIGSLLF 216
>gi|332671192|ref|YP_004454200.1| alanine racemase domain-containing protein [Cellulomonas fimi ATCC
484]
gi|332340230|gb|AEE46813.1| alanine racemase domain protein [Cellulomonas fimi ATCC 484]
Length = 256
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 65/239 (27%), Positives = 105/239 (43%), Gaps = 24/239 (10%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQV-----------IFA 54
+L + ++ + A RP V ++ +K VD+ +IR+AL+ +
Sbjct: 19 RLASVRSRVAAACSDAGRPAADVRVLLATKTVDAARIRLALAADAAAVAADPALTPVLVG 78
Query: 55 ENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
EN++QE K L IG LQSNKV+ + +E+V+ A LS
Sbjct: 79 ENRVQELVAKGPDLADLRPTT-HLIGPLQSNKVNAALRWVSCVESVTSLDLARRLSDRCA 137
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPK 171
+ L V +QVN E+ K G+ D + + + G M + P +
Sbjct: 138 DRPVALDVLVQVNVSGEVTKHGVPLTAAADLALAVAALPGVRLAGFMTVGLRSPDVAAVG 197
Query: 172 PHFYLLSEIAREC---------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ L+ + E +LSMGM+ D E+A+A GAT VR+GS +FG+RP +
Sbjct: 198 AGYASLAALRDEVLTSGAPGTQGARELSMGMSGDLEVAVAHGATLVRVGSAVFGDRPAR 256
>gi|223040193|ref|ZP_03610472.1| pyridoxal phosphate enzyme, YggS family [Campylobacter rectus
RM3267]
gi|222878554|gb|EEF13656.1| pyridoxal phosphate enzyme, YggS family [Campylobacter rectus
RM3267]
Length = 211
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 66/218 (30%), Positives = 110/218 (50%), Gaps = 17/218 (7%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
KL ++IEN+ R ++V L+AVSK V +K++ GQ F EN++QE K K
Sbjct: 2 KLAQILERIENA-----RTGEAVKLIAVSKNVTTKEVLELFEQGQTSFGENRVQELKNKS 56
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYI 124
L ++ FIG LQSNK++ +++L + ++ + A + +I + LP +
Sbjct: 57 EILSNLP-IEWHFIGRLQSNKINHLLALKPALWQSCESVEAALAVDKRLICE---LPCLL 112
Query: 125 QVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEI 180
Q+N+ +E K GI P F+ + ++ L G+M I + + F +I
Sbjct: 113 QINSAHEDTKQGISPEAAQDAFLQIAQECKFLKPIGVMSIGAHAIDERVVQKSFETTRKI 172
Query: 181 ARECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ SMGM+ DFELAI SG+ +R+GS ++
Sbjct: 173 YENLQPRGAKICSMGMSGDFELAIKSGSNMIRLGSILY 210
>gi|78777433|ref|YP_393748.1| hypothetical protein Suden_1235 [Sulfurimonas denitrificans DSM
1251]
gi|78497973|gb|ABB44513.1| Protein of unknown function UPF0001 [Sulfurimonas denitrificans DSM
1251]
Length = 224
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 55/215 (25%), Positives = 101/215 (46%), Gaps = 8/215 (3%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ +++E + + K V +VA+SK ++I+ GQ F ENK Q+ + K
Sbjct: 10 IDDVIRRVEFARVRFN-DKHIVKIVAISKYSTCQEIKALYEIGQRAFGENKAQDLRVKSS 68
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
L E ++ F+G+LQ NK++ ++ + + + + A + ++ + L +Q
Sbjct: 69 EL-DELPLEWHFVGNLQKNKINNLLDINPSLFQALDSLELAHEIQKKLHVRDVKLEALLQ 127
Query: 126 VNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIA 181
+N+ E K G+MP ++ + + G+M I + K F I
Sbjct: 128 INSAKEESKHGVMPEDAVQIYNQIKKECPNITLRGVMSIGAHTDDKKIIKKSFDTTYGIY 187
Query: 182 RECK-LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+E + SMGM+ DFELAI G+ +R+GS +F
Sbjct: 188 KELEDADICSMGMSGDFELAIECGSNMIRLGSIMF 222
>gi|15841640|ref|NP_336677.1| hypothetical protein MT2207 [Mycobacterium tuberculosis CDC1551]
gi|254232307|ref|ZP_04925634.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|13881892|gb|AAK46491.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
gi|124601366|gb|EAY60376.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
Length = 264
Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 52/239 (21%), Positives = 93/239 (38%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 21 LTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEAS 80
Query: 63 KK---------WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K L V +G +Q NK + +V + + L +
Sbjct: 81 AKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVDSSRLVTALDRAV 140
Query: 114 I------KQSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
+ ++ L VY+QV+ + + G+ P ++ L + GLM IP
Sbjct: 141 VAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRICAQVQESEGLELVGLMGIP 200
Query: 165 PAMGNPKPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L + LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 201 PLDWDPDEAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 259
>gi|257126827|ref|YP_003164941.1| alanine racemase [Leptotrichia buccalis C-1013-b]
gi|257050766|gb|ACV39950.1| alanine racemase domain protein [Leptotrichia buccalis C-1013-b]
Length = 227
Score = 196 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 49/223 (21%), Positives = 102/223 (45%), Gaps = 14/223 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + + + + V ++ VSK ++ ++ + + G F EN+ Q +
Sbjct: 8 IHQNYEKILENV----KKYSPYPEKVKILFVSKYLNVEEHKAVIDMGYDYFGENRAQLYR 63
Query: 63 KKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K E +++ FIG LQ NK+ I++ +++ ++ + ++ + I+ ++ +
Sbjct: 64 DKLNEFSDEKYKNIKWDFIGRLQKNKIKYIINSVNLVHSIDSYQLLEEINKKAIENNKTI 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
IQ+N E K+G+ K + + G M + P + +F +
Sbjct: 124 SGLIQINVSREESKTGVYIEDFKKDSEKYFSMSNVKIAGFMTMAPFDASEYEIDNYFSKM 183
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E+ E + +T+LSMGM+ D+ A+ +GAT +RIGS +F
Sbjct: 184 RELKEEYEKKYDYITELSMGMSNDYIEALKNGATIIRIGSKLF 226
>gi|15609285|ref|NP_216664.1| hypothetical protein Rv2148c [Mycobacterium tuberculosis H37Rv]
gi|31793328|ref|NP_855821.1| hypothetical protein Mb2172c [Mycobacterium bovis AF2122/97]
gi|121638030|ref|YP_978254.1| hypothetical protein BCG_2165c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148661964|ref|YP_001283487.1| hypothetical protein MRA_2163 [Mycobacterium tuberculosis H37Ra]
gi|148823357|ref|YP_001288111.1| hypothetical protein TBFG_12178 [Mycobacterium tuberculosis F11]
gi|167967849|ref|ZP_02550126.1| hypothetical protein MtubH3_07376 [Mycobacterium tuberculosis
H37Ra]
gi|215403535|ref|ZP_03415716.1| hypothetical protein Mtub0_07608 [Mycobacterium tuberculosis
02_1987]
gi|215411865|ref|ZP_03420649.1| hypothetical protein Mtub9_11114 [Mycobacterium tuberculosis
94_M4241A]
gi|215431078|ref|ZP_03428997.1| hypothetical protein MtubE_10460 [Mycobacterium tuberculosis
EAS054]
gi|218753872|ref|ZP_03532668.1| hypothetical protein MtubG1_10729 [Mycobacterium tuberculosis GM
1503]
gi|219558127|ref|ZP_03537203.1| hypothetical protein MtubT1_12817 [Mycobacterium tuberculosis T17]
gi|224990524|ref|YP_002645211.1| hypothetical protein JTY_2159 [Mycobacterium bovis BCG str. Tokyo
172]
gi|289443653|ref|ZP_06433397.1| YggS family pyridoxal phosphate enzyme [Mycobacterium tuberculosis
T46]
gi|289447776|ref|ZP_06437520.1| YggS family pyridoxal phosphate enzyme [Mycobacterium tuberculosis
CPHL_A]
gi|289554065|ref|ZP_06443275.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289570264|ref|ZP_06450491.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289574831|ref|ZP_06455058.1| YggS family pyridoxal phosphate enzyme [Mycobacterium tuberculosis
K85]
gi|289754258|ref|ZP_06513636.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289758269|ref|ZP_06517647.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis T85]
gi|289762310|ref|ZP_06521688.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|297634737|ref|ZP_06952517.1| hypothetical protein MtubK4_11471 [Mycobacterium tuberculosis KZN
4207]
gi|298525643|ref|ZP_07013052.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|54040489|sp|P67084|Y2172_MYCBO RecName: Full=UPF0001 protein Mb2172c
gi|54042946|sp|P67083|Y2148_MYCTU RecName: Full=UPF0001 protein Rv2148c/MT2207
gi|2104330|emb|CAB08645.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|31618920|emb|CAD97025.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121493678|emb|CAL72153.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148506116|gb|ABQ73925.1| hypothetical protein MRA_2163 [Mycobacterium tuberculosis H37Ra]
gi|148721884|gb|ABR06509.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|224773637|dbj|BAH26443.1| hypothetical protein JTY_2159 [Mycobacterium bovis BCG str. Tokyo
172]
gi|289416572|gb|EFD13812.1| YggS family pyridoxal phosphate enzyme [Mycobacterium tuberculosis
T46]
gi|289420734|gb|EFD17935.1| YggS family pyridoxal phosphate enzyme [Mycobacterium tuberculosis
CPHL_A]
gi|289438697|gb|EFD21190.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289539262|gb|EFD43840.1| YggS family pyridoxal phosphate enzyme [Mycobacterium tuberculosis
K85]
gi|289544018|gb|EFD47666.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289694845|gb|EFD62274.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289709816|gb|EFD73832.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|289713833|gb|EFD77845.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium
tuberculosis T85]
gi|298495437|gb|EFI30731.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|328458550|gb|AEB03973.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length = 258
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 52/239 (21%), Positives = 93/239 (38%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 15 LTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEAS 74
Query: 63 KK---------WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K L V +G +Q NK + +V + + L +
Sbjct: 75 AKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVDSSRLVTALDRAV 134
Query: 114 I------KQSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
+ ++ L VY+QV+ + + G+ P ++ L + GLM IP
Sbjct: 135 VAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRICAQVQESEGLELVGLMGIP 194
Query: 165 PAMGNPKPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L + LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 195 PLDWDPDEAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 253
>gi|300741270|ref|ZP_07071291.1| pyridoxal phosphate enzyme, YggS family [Rothia dentocariosa M567]
gi|300380455|gb|EFJ77017.1| pyridoxal phosphate enzyme, YggS family [Rothia dentocariosa M567]
Length = 273
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 62/255 (24%), Positives = 97/255 (38%), Gaps = 37/255 (14%)
Query: 3 LGNKLQVFKQKIENSAILAK--RPKDS--VSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
L + ++ ++ R + S V LV V+K + + + G IF EN+
Sbjct: 18 LADNYARVMARVRDAEADTSGVRTEHSPTVRLVTVTKFFPASDVAALYTQGVRIFGENRD 77
Query: 59 QEAKKKWIPLRK----EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE-- 112
QEA K LR FIG LQ+NK +V +++V R L+
Sbjct: 78 QEAAPKARALRAIEKPADPAYWTFIGQLQTNKAKSVVKYAHQVQSVDRSSLIDSLAKAYR 137
Query: 113 --------------MIKQSRFLPVYIQVNT--------GYEIQKSGIMPNQTKDFVILCR 150
L IQV+ E + G ++ +
Sbjct: 138 NQVARYETGEQDAPAALSQGALECLIQVSLEAQATAGHASEGARGGTDQDEILELAERIE 197
Query: 151 QKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGA 205
+ +L G+M + P NP F L E+A+ + ++S GM+ D E AI G+
Sbjct: 198 AQEELRCGGIMAVAPLGANPDESFEKLWELAQGLRAEFPHADQISAGMSADLEAAIRWGS 257
Query: 206 TSVRIGSGIFGERPC 220
T VR+GS I G+R
Sbjct: 258 TCVRVGSDIMGKRDY 272
>gi|268679691|ref|YP_003304122.1| alanine racemase domain protein [Sulfurospirillum deleyianum DSM
6946]
gi|268617722|gb|ACZ12087.1| alanine racemase domain protein [Sulfurospirillum deleyianum DSM
6946]
Length = 225
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 57/216 (26%), Positives = 102/216 (47%), Gaps = 10/216 (4%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP 67
+IE + + V +VA SK + I GQ F ENK+Q+ K
Sbjct: 11 DAILNRIEKARLGVS-GHHIVKIVAASKSATPQMIEAMYEIGQRSFGENKIQDMSDKVHA 69
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLFD-VIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L ++ FIG LQ+NK+++++ L ++ ++S + A + + +S+ + +Q+
Sbjct: 70 L-SHLPLEWHFIGRLQTNKINQLIDLDPFLMHSLSSLELAQEIDKRLHVKSKTMSALLQI 128
Query: 127 NTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAMGNPK---PHFYLLSEIAR 182
N+ YE QK+G++ + + + ++G+M I + K F ++
Sbjct: 129 NSAYEEQKAGVLSEEALEIYEQISLTCKHIQLKGVMSIGAHSEDTKAIQKSFEATHKLFE 188
Query: 183 ECK---LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ SMGM+ DFELAIA G+ VR+GS +F
Sbjct: 189 SLQNKGAKYCSMGMSNDFELAIACGSNMVRLGSLLF 224
>gi|253798787|ref|YP_003031788.1| hypothetical protein TBMG_01833 [Mycobacterium tuberculosis KZN
1435]
gi|254364953|ref|ZP_04980999.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|254551185|ref|ZP_05141632.1| hypothetical protein Mtube_12086 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|260187147|ref|ZP_05764621.1| hypothetical protein MtubCP_14083 [Mycobacterium tuberculosis
CPHL_A]
gi|260201262|ref|ZP_05768753.1| hypothetical protein MtubT4_14384 [Mycobacterium tuberculosis T46]
gi|260205443|ref|ZP_05772934.1| hypothetical protein MtubK8_14177 [Mycobacterium tuberculosis K85]
gi|289745421|ref|ZP_06504799.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|297731726|ref|ZP_06960844.1| hypothetical protein MtubKR_11581 [Mycobacterium tuberculosis KZN
R506]
gi|306780176|ref|ZP_07418513.1| hypothetical protein TMBG_00696 [Mycobacterium tuberculosis
SUMu002]
gi|306784921|ref|ZP_07423243.1| hypothetical protein TMCG_00244 [Mycobacterium tuberculosis
SUMu003]
gi|306789288|ref|ZP_07427610.1| hypothetical protein TMDG_00626 [Mycobacterium tuberculosis
SUMu004]
gi|306793616|ref|ZP_07431918.1| hypothetical protein TMEG_02515 [Mycobacterium tuberculosis
SUMu005]
gi|306798007|ref|ZP_07436309.1| hypothetical protein TMFG_01110 [Mycobacterium tuberculosis
SUMu006]
gi|306803886|ref|ZP_07440554.1| hypothetical protein TMHG_01338 [Mycobacterium tuberculosis
SUMu008]
gi|306808458|ref|ZP_07445126.1| hypothetical protein TMGG_00706 [Mycobacterium tuberculosis
SUMu007]
gi|306968282|ref|ZP_07480943.1| hypothetical protein TMIG_00815 [Mycobacterium tuberculosis
SUMu009]
gi|306972511|ref|ZP_07485172.1| hypothetical protein TMJG_00410 [Mycobacterium tuberculosis
SUMu010]
gi|307080220|ref|ZP_07489390.1| hypothetical protein TMKG_00410 [Mycobacterium tuberculosis
SUMu011]
gi|307084801|ref|ZP_07493914.1| hypothetical protein TMLG_03773 [Mycobacterium tuberculosis
SUMu012]
gi|308232048|ref|ZP_07414735.2| hypothetical protein TMAG_00336 [Mycobacterium tuberculosis
SUMu001]
gi|313659061|ref|ZP_07815941.1| hypothetical protein MtubKV_11596 [Mycobacterium tuberculosis KZN
V2475]
gi|134150467|gb|EBA42512.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|253320290|gb|ACT24893.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289685949|gb|EFD53437.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|308215187|gb|EFO74586.1| hypothetical protein TMAG_00336 [Mycobacterium tuberculosis
SUMu001]
gi|308326946|gb|EFP15797.1| hypothetical protein TMBG_00696 [Mycobacterium tuberculosis
SUMu002]
gi|308330381|gb|EFP19232.1| hypothetical protein TMCG_00244 [Mycobacterium tuberculosis
SUMu003]
gi|308334215|gb|EFP23066.1| hypothetical protein TMDG_00626 [Mycobacterium tuberculosis
SUMu004]
gi|308338011|gb|EFP26862.1| hypothetical protein TMEG_02515 [Mycobacterium tuberculosis
SUMu005]
gi|308341698|gb|EFP30549.1| hypothetical protein TMFG_01110 [Mycobacterium tuberculosis
SUMu006]
gi|308345188|gb|EFP34039.1| hypothetical protein TMGG_00706 [Mycobacterium tuberculosis
SUMu007]
gi|308349494|gb|EFP38345.1| hypothetical protein TMHG_01338 [Mycobacterium tuberculosis
SUMu008]
gi|308354124|gb|EFP42975.1| hypothetical protein TMIG_00815 [Mycobacterium tuberculosis
SUMu009]
gi|308358065|gb|EFP46916.1| hypothetical protein TMJG_00410 [Mycobacterium tuberculosis
SUMu010]
gi|308362003|gb|EFP50854.1| hypothetical protein TMKG_00410 [Mycobacterium tuberculosis
SUMu011]
gi|308365635|gb|EFP54486.1| hypothetical protein TMLG_03773 [Mycobacterium tuberculosis
SUMu012]
gi|323719303|gb|EGB28445.1| hypothetical protein TMMG_01428 [Mycobacterium tuberculosis
CDC1551A]
Length = 261
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 52/239 (21%), Positives = 93/239 (38%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 18 LTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEAS 77
Query: 63 KK---------WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K L V +G +Q NK + +V + + L +
Sbjct: 78 AKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVDSSRLVTALDRAV 137
Query: 114 I------KQSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
+ ++ L VY+QV+ + + G+ P ++ L + GLM IP
Sbjct: 138 VAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRICAQVQESEGLELVGLMGIP 197
Query: 165 PAMGNPKPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L + LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 198 PLDWDPDEAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 256
>gi|215446377|ref|ZP_03433129.1| hypothetical protein MtubT_10703 [Mycobacterium tuberculosis T85]
Length = 259
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 52/239 (21%), Positives = 93/239 (38%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 15 LTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEAS 74
Query: 63 KK---------WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K L V +G +Q NK + +V + + L +
Sbjct: 75 AKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVDSSRLVTALDRAV 134
Query: 114 I------KQSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
+ ++ L VY+QV+ + + G+ P ++ L + GLM IP
Sbjct: 135 VAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRICAQVQESEGLELVGLMGIP 194
Query: 165 PAMGNPKPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L + LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 195 PLDWDPDEAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 253
>gi|326903765|gb|EGE50698.1| hypothetical protein TBPG_01647 [Mycobacterium tuberculosis W-148]
Length = 262
Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 52/239 (21%), Positives = 93/239 (38%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 18 LTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEAS 77
Query: 63 KK---------WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K L V +G +Q NK + +V + + L +
Sbjct: 78 AKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVDSSRLVTALDRAV 137
Query: 114 I------KQSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
+ ++ L VY+QV+ + + G+ P ++ L + GLM IP
Sbjct: 138 VAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRICAQVQESEGLELVGLMGIP 197
Query: 165 PAMGNPKPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L + LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 198 PLDWDPDEAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 256
>gi|302868921|ref|YP_003837558.1| alanine racemase domain-containing protein [Micromonospora
aurantiaca ATCC 27029]
gi|302571780|gb|ADL47982.1| alanine racemase domain protein [Micromonospora aurantiaca ATCC
27029]
Length = 248
Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats.
Identities = 67/231 (29%), Positives = 99/231 (42%), Gaps = 13/231 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I ++ A R +D V+LVAV+K + + G EN+ QEA
Sbjct: 16 LAAGLARVRARIADACAAAGRQRDEVTLVAVTKTYPAADVVALAGLGVSDVGENRDQEAA 75
Query: 63 KKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK-QSRFL 120
K + + FIG LQ NK +V DV+++V + A+ L + R L
Sbjct: 76 PKAEAVAAAGAAPRWHFIGQLQRNKARSVVRYADVVQSVDSVRLAAALDAAAGAVRDRPL 135
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKD------FVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
V +QV+ + + G +P L + GLM + P P F
Sbjct: 136 DVLVQVSIDGDPARGGALPGAADPQRGLDPVAAAVAGADGLRLAGLMAVAPLGWEPDRAF 195
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+E+A + LS GM+ D E AI GAT VR+GS + G RP
Sbjct: 196 ARLAEVAAALRADHPDATVLSAGMSGDLESAIGHGATHVRVGSALLGMRPA 246
>gi|329940938|ref|ZP_08290218.1| hypothetical protein SGM_5710 [Streptomyces griseoaurantiacus M045]
gi|329300232|gb|EGG44130.1| hypothetical protein SGM_5710 [Streptomyces griseoaurantiacus M045]
Length = 239
Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats.
Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I + A R ++ V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 LAANLAKVEDRIAAACAAAGRAREEVTLIVVTKTYPASDVRLLAELGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + F+G LQ+NKV ++ ++++V R + LS E ++ R +
Sbjct: 68 PKAAA-CSDLPLTWHFVGQLQTNKVRSVLGYASLVQSVDRARLVMALSREAVRTGREVGC 126
Query: 123 YIQVNTGY----EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPHF 174
+QV ++ G+ P+ + L + L ++GLM + P G + F
Sbjct: 127 LLQVALDAGESGRGERGGVGPDGVGELAALVEEAPGLRLDGLMTVAPLTGEYAGRQQAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +++ + T +S GM+RD E A+A+GAT VR+G+ + G RP
Sbjct: 187 ERLMDLSTVLRKTHPAANMVSAGMSRDLEEAVAAGATHVRVGTAVLGVRP 236
>gi|215427527|ref|ZP_03425446.1| hypothetical protein MtubT9_14519 [Mycobacterium tuberculosis T92]
gi|289750744|ref|ZP_06510122.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289691331|gb|EFD58760.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length = 258
Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats.
Identities = 52/239 (21%), Positives = 93/239 (38%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 15 LTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEAS 74
Query: 63 KK---------WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K L V +G +Q NK + +V + + L +
Sbjct: 75 AKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVDSSRLVTALDRAV 134
Query: 114 I------KQSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
+ ++ L VY+QV+ + + G+ P ++ L + GLM IP
Sbjct: 135 VAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRVCAQVQESEGLELVGLMGIP 194
Query: 165 PAMGNPKPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L + LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 195 PLDWDPDEAFDRLQSEHNRVRAMFPHAIGLSAGMSNDLEVAVKHGSTCVRVGTALLGPR 253
>gi|296273661|ref|YP_003656292.1| alanine racemase domain-containing protein [Arcobacter nitrofigilis
DSM 7299]
gi|296097835|gb|ADG93785.1| alanine racemase domain protein [Arcobacter nitrofigilis DSM 7299]
Length = 226
Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats.
Identities = 56/219 (25%), Positives = 113/219 (51%), Gaps = 10/219 (4%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L +++E + + V ++A+SK S+++ GQ + ENK+Q+ K+K
Sbjct: 9 ENLDKLIERVEAARLQVS-HHHIVKIIAISKYSLSEEVATLYGAGQRAYGENKVQDLKEK 67
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFLPVY 123
L +E ++ F+G LQ NK++ ++ L +++++ A + ++ +++ +
Sbjct: 68 MEKL-EELPLEWHFVGRLQKNKINNLIDLNPTLVQSIDSLDLAIEFNKKLAAKNKKINAL 126
Query: 124 IQVNTGYEIQKSGIMPNQTKD-FVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
+Q+N+ YE K+G+MP + + + + +N++G+M I + + K F +
Sbjct: 127 LQINSAYEESKAGVMPEEAIETYKKIIDTCANINLKGVMSIGAHVADEDIIKKSFETTKK 186
Query: 180 IARE---CKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
I E SMGM+ DFELAI+ G+ +R+GS +F
Sbjct: 187 IFDELAPLGAKYCSMGMSGDFELAISCGSNMIRVGSSLF 225
>gi|108800217|ref|YP_640414.1| hypothetical protein Mmcs_3251 [Mycobacterium sp. MCS]
gi|119869345|ref|YP_939297.1| alanine racemase domain-containing protein [Mycobacterium sp. KMS]
gi|108770636|gb|ABG09358.1| Protein of unknown function UPF0001 [Mycobacterium sp. MCS]
gi|119695434|gb|ABL92507.1| alanine racemase domain protein [Mycobacterium sp. KMS]
Length = 254
Score = 195 bits (497), Expect = 4e-48, Method: Composition-based stats.
Identities = 55/218 (25%), Positives = 91/218 (41%), Gaps = 22/218 (10%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW---DVQLRFIG 80
++L+ V+K + IR+ G FAE++ QEA KK L E+ V+ +G
Sbjct: 33 DVAEIALLPVTKFFPASDIRILYGLGCREFAESREQEASKKAAELAGEFAGDPVRWHMVG 92
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK------QSRFLPVYIQVNTGYEIQK 134
+Q NK + +V K + L ++ L VY+Q++ ++++
Sbjct: 93 RIQRNKARAVARWAYAAHSVDSAKLIAALDRGAGDALGDGVRTAPLRVYLQLSLDGDVER 152
Query: 135 SGIM---PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLT---- 187
G+ P L GLM IPP + + F L R +
Sbjct: 153 GGVDVDQPELIDQLCAAVDSAEALEFVGLMGIPPLGADAESAFARLQSEWRRVRQRRKEI 212
Query: 188 ------KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+LS GM+ D E+A+ G+T VR+G+ + G RP
Sbjct: 213 GRGQRFELSAGMSGDLEMAVRHGSTCVRVGTALMGPRP 250
>gi|239931813|ref|ZP_04688766.1| hypothetical protein SghaA1_26572 [Streptomyces ghanaensis ATCC
14672]
gi|291440182|ref|ZP_06579572.1| alanine racemase domain-containing protein [Streptomyces ghanaensis
ATCC 14672]
gi|291343077|gb|EFE70033.1| alanine racemase domain-containing protein [Streptomyces ghanaensis
ATCC 14672]
Length = 239
Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats.
Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +++I + A R +D V+L+ V+K + +R+ G AEN+ Q+A
Sbjct: 8 IAANLARVEERIAAACAAAGRARDEVTLIVVTKTFPASDVRLLSELGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K + + F+G LQ+NKV +V V+ +V R + + LS E ++ R +
Sbjct: 68 PKAAQ-CADLPLTWHFVGQLQTNKVRSVVGYAGVVHSVDRARLVTALSREAVRSGREVGC 126
Query: 123 YIQVNTGY----EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPHF 174
+QV ++ G+ P + L L ++GLM + P G + F
Sbjct: 127 LVQVALDAGEGGRGERGGVAPGGVAELAALVAGAEGLRLDGLMTVAPLTGEYAGRQQAAF 186
Query: 175 YLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +++ + +S GM+ D E A+A+GAT VR+GS + G RP
Sbjct: 187 ERLVDLSTALRKAHPTANMVSAGMSTDLEQAVAAGATHVRVGSAVLGVRP 236
>gi|205373283|ref|ZP_03226087.1| hypothetical protein Bcoam_08120 [Bacillus coahuilensis m4-4]
Length = 191
Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats.
Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 16/190 (8%)
Query: 38 DSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI 97
++ + A+ G EN+ + K+ + +V +IG+LQ+ KV +++ D +
Sbjct: 2 SIQRAKEAIDAGVQHLGENRDEGFLAKFEEIGS--NVTWHYIGNLQTRKVKSVINKVDYL 59
Query: 98 ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNV 157
++ R A + + + ++QVN E K GI P +F+ + V
Sbjct: 60 HSLDRLSLAKEIEKRA---NAPVLCFVQVNVSGEESKQGIAPEHIMEFIKELAHFSNIKV 116
Query: 158 EGLMCIPPAMGNP---KPHFYLLSEIARECK--------LTKLSMGMTRDFELAIASGAT 206
GLM + P + + F L + E K +LSMGM+ DFELAI GAT
Sbjct: 117 VGLMTMAPYSSDEVLLRTIFQKLRVLRDEIKNLNLDYAPCQELSMGMSNDFELAIEEGAT 176
Query: 207 SVRIGSGIFG 216
+RIG+ + G
Sbjct: 177 YIRIGTSLVG 186
>gi|315504609|ref|YP_004083496.1| alanine racemase domain protein [Micromonospora sp. L5]
gi|315411228|gb|ADU09345.1| alanine racemase domain protein [Micromonospora sp. L5]
Length = 248
Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats.
Identities = 67/231 (29%), Positives = 99/231 (42%), Gaps = 13/231 (5%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L + +I ++ A R +D V+LVAV+K + + G EN+ QEA
Sbjct: 16 LAVGLARVRARIADACAAAGRQRDEVTLVAVTKTYPAADVVALAGLGVSDVGENRDQEAA 75
Query: 63 KKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK-QSRFL 120
K + + FIG LQ NK +V DV+++V + A+ L + R L
Sbjct: 76 PKAEAVAAAGAAPRWHFIGQLQRNKARSVVRYADVVQSVDSVRLAAALDAAAGAVRDRPL 135
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKD------FVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
V +QV+ + + G +P L + GLM + P P F
Sbjct: 136 DVLVQVSIDGDPARGGALPGAADPQRGLDPVAAAVAGADGLRLAGLMAVAPLGWEPDRAF 195
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L+E+A + LS GM+ D E AI GAT VR+GS + G RP
Sbjct: 196 ARLAEVAAALRADHPDATVLSAGMSGDLESAIGHGATHVRVGSALLGMRPA 246
>gi|226355701|ref|YP_002785441.1| hypothetical protein Deide_08190 [Deinococcus deserti VCD115]
gi|226317691|gb|ACO45687.1| conserved hypothetical protein [Deinococcus deserti VCD115]
Length = 209
Score = 194 bits (494), Expect = 7e-48, Method: Composition-based stats.
Identities = 66/218 (30%), Positives = 100/218 (45%), Gaps = 13/218 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKI-RVALSCGQVIFAENKLQ 59
MSL L +Q + + R S LVAV+K D I R L G E + Q
Sbjct: 1 MSLPEVLAAIRQ----AEAASGREPGSARLVAVTKGQDFLSIERSVLKYGAFPLGEGRAQ 56
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E + K D++ F+G LQ NKV + ++ ++ A ++ R
Sbjct: 57 ELRDKAAA---RPDLEWHFLGPLQRNKVKYLRP-VTLVHSLEEIWQAEAIAQAAQSWGRA 112
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLL 177
V IQV+ G E+QK G+ P + F R+ L V GLM + P + F
Sbjct: 113 PDVLIQVHNG-EVQKHGVDPEKLPGFYSSVRET-GLTVRGLMVMAPEADEAQVRRVFEDT 170
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ A + L++LSMGM+ D+ LA+ +G+T VR+G +F
Sbjct: 171 ARRAHDLGLSELSMGMSGDYPLAVQAGSTLVRVGRSLF 208
>gi|183983178|ref|YP_001851469.1| hypothetical protein MMAR_3188 [Mycobacterium marinum M]
gi|183176504|gb|ACC41614.1| conserved protein [Mycobacterium marinum M]
Length = 261
Score = 194 bits (494), Expect = 8e-48, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 98/239 (41%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L V + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 18 LTHALAVVRSRLAAAAEAAGRKVSEIELLPITKFFPATDVAILARLGCRAVGESRDQEAS 77
Query: 63 KKWIPLRKEW---------DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K L + + +Q +G +Q NKV + + ++ + + L +
Sbjct: 78 AKVAELARLFSAPIRSGSRGIQWHMVGQIQRNKVRSLANWAHTAHSIDTPQLVTALDRAI 137
Query: 114 ------IKQSRFLPVYIQVNTGYEIQKSGI---MPNQTKDFVILCRQKYQLNVEGLMCIP 164
++ L VY+QV+ ++ + G+ P L + GLM +P
Sbjct: 138 TTAIADRRRGNPLRVYVQVSLDGDVSRGGVDMTDPGAVDRICAQVSDAQSLELIGLMGVP 197
Query: 165 PAMGNPKPHFYLLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P + + F L + +LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 198 PRDWDQEKAFERLQSEHSRVLESFPTAVRLSAGMSDDLEIAVKHGSTCVRVGTALLGSR 256
>gi|328872372|gb|EGG20739.1| hypothetical protein DFA_00602 [Dictyostelium fasciculatum]
Length = 229
Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats.
Identities = 71/211 (33%), Positives = 101/211 (47%), Gaps = 21/211 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L + K KI N +V+LVAVSK S IR GQ F EN +QE
Sbjct: 29 DLVTRYDAIKSKITN---------PNVTLVAVSKTKPSFMIRALYEHGQRHFGENYIQEL 79
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIKQSRF 119
+ K L D++ FIGS+QSNK+ + V VIET+ ++ TA L+ Q+
Sbjct: 80 QTKSDELSDLVDIKWHFIGSIQSNKLKLLETVKSLHVIETIEKQSTADKLAKSWPHQT-P 138
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILC----RQKYQLNVEGLMCIPPAMGNP-KPHF 174
+ + +QVNT E KSG P + + V + K +L V GLM I +P +P F
Sbjct: 139 INIMVQVNTSGEDSKSGCEPGEIVNIVKHLITDEKCKQKLKVIGLMTIGSPNASPDQPDF 198
Query: 175 YLLSE----IARECKLTKLSMGMTRDFELAI 201
L E I++E + K S+G+ EL +
Sbjct: 199 KKLVECKENISKELGIDKESIGLIPMLELVV 229
>gi|212535840|ref|XP_002148076.1| alanine racemase family protein, putative [Penicillium marneffei
ATCC 18224]
gi|210070475|gb|EEA24565.1| alanine racemase family protein, putative [Penicillium marneffei
ATCC 18224]
Length = 314
Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats.
Identities = 78/256 (30%), Positives = 106/256 (41%), Gaps = 56/256 (21%)
Query: 20 LAKRPKDS-VSLVAVSKMVDSKKIRVALSCG-----------------------QVIFAE 55
RP + V LVAVSK+ + + S Q+ F E
Sbjct: 49 RRHRPANKPVRLVAVSKLKPASDVLALYSRSLPVDESSTPSATTTTTTTPSATQQLHFGE 108
Query: 56 NKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF---DVIETVSREKTASLLSLE 112
N QE +K L + ++ FIG LQSNK + +E+V EK A LL
Sbjct: 109 NYFQELLEKSRILPR--GIKWHFIGGLQSNKCVSLARDVRGLWAVESVDTEKKAKLLDKG 166
Query: 113 MIKQS----------RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLM 161
++ + L V++QVNT E KSG+ P T R Q +L ++GLM
Sbjct: 167 WGERDISALSEEERTQKLRVFVQVNTSGEEAKSGVEPVATPALCRYIREQCPRLKLQGLM 226
Query: 162 CIPP-----AMGNPKPHFYLLSEIA-----------RECKLTKLSMGMTRDFELAIASGA 205
I N F L E +E +LSMGM+ DFE AIA G+
Sbjct: 227 TIGAIARSKESTNENADFVSLIETREAIIKALGMSEQEADDFELSMGMSSDFEGAIALGS 286
Query: 206 TSVRIGSGIFGERPCQ 221
VR+G+ IFGERP +
Sbjct: 287 DQVRVGTTIFGERPVK 302
>gi|126435840|ref|YP_001071531.1| alanine racemase domain-containing protein [Mycobacterium sp. JLS]
gi|126235640|gb|ABN99040.1| alanine racemase domain protein [Mycobacterium sp. JLS]
Length = 254
Score = 194 bits (493), Expect = 9e-48, Method: Composition-based stats.
Identities = 55/218 (25%), Positives = 90/218 (41%), Gaps = 22/218 (10%)
Query: 24 PKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW---DVQLRFIG 80
++L+ V+K + IR+ G FAE++ QEA KK L E+ V+ +G
Sbjct: 33 DVAEIALLPVTKFFPASDIRILYGLGCREFAESREQEASKKAAELAGEFAGDPVRWHMVG 92
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK------QSRFLPVYIQVNTGYEIQK 134
+Q NK + +V K + L ++ L VY+Q++ ++++
Sbjct: 93 RIQRNKARAVARWAYAAHSVDSAKLIAALDRGAGDALGDGVRTAPLRVYLQLSLDGDVER 152
Query: 135 SGIM---PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLT---- 187
G+ P L GLM IPP + F L R +
Sbjct: 153 GGVDVDQPELIDQLCAAVDSAEALEFVGLMGIPPLGADAGSAFARLQSEWRRVRQRRKEI 212
Query: 188 ------KLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+LS GM+ D E+A+ G+T VR+G+ + G RP
Sbjct: 213 GRGQRFELSAGMSGDLEMAVRHGSTCVRVGTALMGPRP 250
>gi|300933349|ref|ZP_07148605.1| hypothetical protein CresD4_04720 [Corynebacterium resistens DSM
45100]
Length = 230
Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 56/202 (27%), Positives = 84/202 (41%), Gaps = 13/202 (6%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
L+ ++K + I V G EN+ QEAK K L + +G +Q+ K +
Sbjct: 30 LLPITKFHPVEAIEVLAEFGVGAVGENREQEAKAKHDVLAGRPAI--HMVGQIQTKKANS 87
Query: 90 IVSLFDVIETVSREKTASLLSL------EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
+ + TV K L E + LPV +Q + + Q+ G
Sbjct: 88 VARWAAAVHTVDSSKLLHALERGAGLALERGDRHEKLPVLLQWSADGDPQRGGAGGADID 147
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHF----YLLSEIARE-CKLTKLSMGMTRDFE 198
Q + + GLM +PP +P F LL IA + S GM++D E
Sbjct: 148 ALADEVAQCQHVELRGLMTVPPLDSDPALVFSKGRKLLDAIADRVVGVPVYSAGMSQDLE 207
Query: 199 LAIASGATSVRIGSGIFGERPC 220
+AIA G+T VR+G+ I G RP
Sbjct: 208 IAIAEGSTLVRVGTDIMGPRPV 229
>gi|154509371|ref|ZP_02045013.1| hypothetical protein ACTODO_01902 [Actinomyces odontolyticus ATCC
17982]
gi|153799005|gb|EDN81425.1| hypothetical protein ACTODO_01902 [Actinomyces odontolyticus ATCC
17982]
Length = 232
Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 65/234 (27%), Positives = 105/234 (44%), Gaps = 20/234 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRV----ALSCGQ-VIFAE 55
MS+ + + +I+ + R DSV L K K+ R G ++
Sbjct: 1 MSIPEAIAAARDRIDRATSACGR-TDSVHLELAVKTRTPKECRAAAAALREAGLPILLGH 59
Query: 56 NKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
N++QEA+ +R+ ++ IG LQSNK+++ ++ D IE++ AS +
Sbjct: 60 NRVQEARATAEAIREVPGARIHLIGPLQSNKINQALACVDAIESLDSPALASKIDARATG 119
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP---PAMGNPKP 172
LPV+++VN E K G P+ + L + G M + P + +
Sbjct: 120 ---TLPVFVEVNVSGETTKHGCAPSDVAALIDAVEASAHLQLAGFMTVGLNSPVEADVRA 176
Query: 173 HFYLLSEIARE----CKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L I E + + LSMGM+RD E AIA GAT VR+G+ +FG R
Sbjct: 177 AYAQLRGIRDEAAARLGINESDLALSMGMSRDLEWAIAEGATIVRLGTAVFGAR 230
>gi|15806385|ref|NP_295091.1| hypothetical protein DR_1368 [Deinococcus radiodurans R1]
gi|12230836|sp|Q9RUL6|Y1368_DEIRA RecName: Full=UPF0001 protein DR_1368
gi|6459124|gb|AAF10940.1|AE001983_1 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 209
Score = 192 bits (490), Expect = 2e-47, Method: Composition-based stats.
Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR-VALSCGQVIFAENKLQ 59
MS+ L ++ + A R +V LVAV+K +IR L+ G AEN+ Q
Sbjct: 1 MSVPAVLAGIRE----AEAQAGRAAGTVRLVAVTKGHSLDEIRGQVLAHGDFPLAENRGQ 56
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E + K L + FIG LQ NK+ + ++ ++ A ++ + +
Sbjct: 57 ELRDKVAGLP---GAEWHFIGPLQRNKIKYL-RGVTLVHSIEEPWQAQAIADAAAEWGQA 112
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH--FYLL 177
V +Q + G E QK G++P+ + R L V GLM + P + F
Sbjct: 113 PAVLLQRHNG-EGQKHGVLPDDLPAVLREVRAT-GLEVRGLMAMAPYDDEARAAQVFADT 170
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ A++ L +LSMGM+ D+ LA+A+GAT VR+G +F
Sbjct: 171 ARQAQDLGLVELSMGMSGDYPLAVAAGATLVRVGRSLF 208
>gi|167465829|ref|ZP_02330918.1| hypothetical cytosolic protein [Paenibacillus larvae subsp. larvae
BRL-230010]
Length = 268
Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats.
Identities = 61/253 (24%), Positives = 98/253 (38%), Gaps = 39/253 (15%)
Query: 6 KLQVFKQKIENSAILAK--RPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L+ +Q +++++ R S L V+K S + S G EN+ QEA
Sbjct: 14 NLEAAQQAVKSASEDFSQVRDPQSPLPRLTVVTKFFPSSDVETLYSLGVRHVGENRDQEA 73
Query: 62 KKKWIPLRKEWD----VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL------ 111
K L + D +Q +IG LQ+NK +V + ++ R A L+
Sbjct: 74 SAKATELAEITDAQDPLQWSYIGQLQTNKAKSVVKYVAEVHSIDRISLAQALAKAYSLQV 133
Query: 112 -EMIKQSRF---------LPVYIQVNT----------GYEIQKSGIMPNQTKDFVILCRQ 151
+ L +QV+ E ++ G + +
Sbjct: 134 TRWESEEAPAPFAAVRGGLKCLVQVSLEDHDGSTAGHAAEGKRGGAKLDDLLKIADMLNS 193
Query: 152 KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK-----LTKLSMGMTRDFELAIASGAT 206
L G+M + P NP F L I+++ + ++S GM+ D E AI G+T
Sbjct: 194 SAGLECSGVMAVAPLGMNPDAAFEKLYNISQKLREHHPSAQEISAGMSGDLEAAIRWGST 253
Query: 207 SVRIGSGIFGERP 219
+VRIGS I G RP
Sbjct: 254 NVRIGSKIMGARP 266
>gi|223985287|ref|ZP_03635367.1| hypothetical protein HOLDEFILI_02673 [Holdemania filiformis DSM
12042]
gi|223962743|gb|EEF67175.1| hypothetical protein HOLDEFILI_02673 [Holdemania filiformis DSM
12042]
Length = 213
Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats.
Identities = 57/219 (26%), Positives = 98/219 (44%), Gaps = 22/219 (10%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
+ KQ+ +N L+ VSK +I+ G F EN+ QE +K
Sbjct: 5 YETIKQQCQNQCE----------LLIVSKHRSVAQIQAYYDRGARDFGENRAQELLEKAP 54
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
L + D++ FIG LQ NKV ++ + ++ + AS+L E + +R + V +
Sbjct: 55 QLPQ--DIRWNFIGHLQRNKVRAVLPYLYRVCSLDSLELASVLDREAARLNRTIGVLAEF 112
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP----------KPHFYL 176
N E K+G+ Q F RQ L EG++ + P + + + F
Sbjct: 113 NLAEESTKTGMDKTQAFAFFEALRQFEHLIPEGILVMGPHVEDEAAIAAVFHEARALFDQ 172
Query: 177 LSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
L + + T SMGM+ D+ +A+ G+T +R+G+ +F
Sbjct: 173 LKAQFGDSRFTICSMGMSHDYPIALREGSTQLRLGTILF 211
>gi|118618790|ref|YP_907122.1| hypothetical protein MUL_3496 [Mycobacterium ulcerans Agy99]
gi|118570900|gb|ABL05651.1| conserved protein [Mycobacterium ulcerans Agy99]
Length = 258
Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats.
Identities = 49/239 (20%), Positives = 98/239 (41%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 15 LTHALALVRSRLAAAAEAAGRKVSEIELLPITKFFPATDVAILARLGCRAVGESRDQEAS 74
Query: 63 KKWIPLRKEW---------DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K L + + +Q +G +Q NKV + + ++ + + L +
Sbjct: 75 AKVAELARMFSAPMRSGSRGIQWHMVGQIQRNKVRSLANWAHTAHSIDTPQLVTALDRAI 134
Query: 114 ------IKQSRFLPVYIQVNTGYEIQKSGI---MPNQTKDFVILCRQKYQLNVEGLMCIP 164
++ L V++QV+ ++ + G+ P L + GLM +P
Sbjct: 135 TTAIADRRRGNPLRVHVQVSLDGDVSRGGVDMTDPGAVDRICAQVSDSQSLELIGLMGVP 194
Query: 165 PAMGNPKPHFYLLSE-----IARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P + + F L + +LS GM+ D E+A+ G+T VR+G+ + G R
Sbjct: 195 PRDWDQEKAFERLQSEHNRVLESFPTAVRLSAGMSDDLEIAVKHGSTCVRVGTALLGSR 253
>gi|118474783|ref|YP_892034.1| hypothetical protein CFF8240_0859 [Campylobacter fetus subsp. fetus
82-40]
gi|118414009|gb|ABK82429.1| conserved hypothetical protein [Campylobacter fetus subsp. fetus
82-40]
Length = 205
Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats.
Identities = 61/218 (27%), Positives = 108/218 (49%), Gaps = 23/218 (10%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L KI S L+AVSK V ++ + GQ+ F EN++QE K+K
Sbjct: 2 RLDEILSKI-----------GSTKLIAVSKNVTENEVLELYNQGQIDFGENRVQELKRKK 50
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
L K+ ++ FIG LQ+NK++ +++L ++ ++ A + + LP +
Sbjct: 51 EIL-KDLNLNWHFIGRLQANKINHLLALHPNLWQSCESFSMAEAVDKRL---DYILPTLL 106
Query: 125 QVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEI 180
Q+N+ +E K G+ PN ++F+ + + LN+ G+M I + K F +I
Sbjct: 107 QINSAHEESKQGVDPNAACEEFLRIKQSCKNLNLIGVMSIGAHSDDIKEIQKSFESTYKI 166
Query: 181 A---RECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+E SMGM+ D+ELAI G+ +R+G+ ++
Sbjct: 167 YENLQEHGAKICSMGMSSDYELAIKCGSNMIRLGTILY 204
>gi|262039205|ref|ZP_06012525.1| pyridoxal phosphate enzyme, YggS family [Leptotrichia goodfellowii
F0264]
gi|261746821|gb|EEY34340.1| pyridoxal phosphate enzyme, YggS family [Leptotrichia goodfellowii
F0264]
Length = 227
Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats.
Identities = 49/223 (21%), Positives = 101/223 (45%), Gaps = 14/223 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + K+ I + V ++ V+K + ++ + + G F ENK Q +
Sbjct: 8 IHQNYEKIKEDI----KKYSPYPEKVKILFVTKYFNFEEQKKIIDMGYNYFGENKAQVYR 63
Query: 63 KKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K ++ +++ FIG LQ NK+ I+ ++I ++ + ++ + + +R +
Sbjct: 64 DKVKNFSEDKYKNLKWDFIGRLQKNKIKYIIKNVNLIHSIDSYELLEEINKKAAENNRIV 123
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLL 177
IQ+N E K+G+ + + ++G M + P K +F+ +
Sbjct: 124 NGLIQINISKEESKTGVYVESFEKEYEKYFSMDNVKIKGFMTMAPLEAESHEIKEYFFNM 183
Query: 178 SEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + + L +LSMGM+ D+ A+ SG+T +RIGS +F
Sbjct: 184 LRLKEKYEKKYDYLDELSMGMSNDYIEALESGSTIIRIGSKLF 226
>gi|312947482|gb|ADR28309.1| putative enzyme [Escherichia coli O83:H1 str. NRG 857C]
Length = 169
Score = 191 bits (487), Expect = 4e-47, Method: Composition-based stats.
Identities = 54/173 (31%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
QE ++ FIG LQSNK + FD T+ R + A+ L+ + +
Sbjct: 3 YFQEL--------GVTGLEWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIATRLNDQRPAE 54
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
L V IQ+N E KSGI + + + +L + GLM IP F +
Sbjct: 55 LPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLMAIPAPESEYVRQFEV 114
Query: 177 LSEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
++A R + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 115 ARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYS 167
>gi|320334219|ref|YP_004170930.1| hypothetical protein Deima_1616 [Deinococcus maricopensis DSM
21211]
gi|319755508|gb|ADV67265.1| protein of unknown function UPF0001 [Deinococcus maricopensis DSM
21211]
Length = 209
Score = 191 bits (487), Expect = 5e-47, Method: Composition-based stats.
Identities = 58/194 (29%), Positives = 86/194 (44%), Gaps = 9/194 (4%)
Query: 25 KDSVSLVAVSKMVDSKKIRV-ALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
S LVA++K ++I L G EN+ QE + K L + FIG LQ
Sbjct: 21 PGSARLVAITKGHSVEEITEHVLQHGTFPLGENRGQELRDKARALPGQ---DWHFIGPLQ 77
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NK+ + ++ T+ A ++ R V +QV+ G E QK G+ +
Sbjct: 78 RNKIKYLAP-VTLVHTLEVAWQAEEIARHAEAWGRAPDVLLQVSNG-ERQKHGVSAENLR 135
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMG--NPKPHFYLLSEIARECKLTKLSMGMTRDFELAI 201
RQ LNV GLM + P + F A + L++LSMGM+ D+ A+
Sbjct: 136 ALYDQVRQT-GLNVRGLMVMAPYDDPAAARAVFADTQARAHDLGLSELSMGMSDDYPEAV 194
Query: 202 ASGATSVRIGSGIF 215
GAT VR+G +F
Sbjct: 195 RYGATLVRVGRALF 208
>gi|302528453|ref|ZP_07280795.1| pyridoxal-5'-phosphate dependent enzyme [Streptomyces sp. AA4]
gi|302437348|gb|EFL09164.1| pyridoxal-5'-phosphate dependent enzyme [Streptomyces sp. AA4]
Length = 278
Score = 191 bits (487), Expect = 5e-47, Method: Composition-based stats.
Identities = 57/230 (24%), Positives = 99/230 (43%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R +D V L+ V+K + + G + AEN+ QEA
Sbjct: 44 LAASLAAVEERIARACAEAGRSRDEVRLLGVTKTFPAADAALLTDLGLLDLAENRDQEAG 103
Query: 63 KKW---IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR------EKTASLLSLEM 113
K LR + + +G LQ NK +V +++V A + E
Sbjct: 104 PKAAEVAELRPDVAPRWHMVGRLQRNKARSVVRWAAEVQSVDSARLADALARAVAAAREA 163
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH 173
+++ L V +QV+ ++ + G ++ +L + G+M + P +P
Sbjct: 164 GERTGPLDVLVQVSLDGDVARGGTPLDEVGALADRIAHTGELRLRGVMAVAPLGEDPAAA 223
Query: 174 FYLLSEIA-----RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F LS A R + +S GM+ D + AI G+T VR+G+ + G R
Sbjct: 224 FARLSHAAERVRDRHPEAADVSAGMSHDLDQAIRHGSTCVRVGTALLGGR 273
>gi|297161291|gb|ADI11003.1| hypothetical protein SBI_07883 [Streptomyces bingchenggensis BCW-1]
Length = 203
Score = 191 bits (487), Expect = 5e-47, Method: Composition-based stats.
Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 14/200 (7%)
Query: 33 VSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS 92
V+K + +R+ G AEN+ Q+A K + F+G LQ+NKV + S
Sbjct: 2 VTKTYPASDVRLLAELGVHHVAENRDQDAAPKAAECADLPLI-WHFVGQLQTNKVRSVAS 60
Query: 93 LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----IQKSGIMPNQTKDFVIL 148
D++++V R++ LS + R L IQV E ++ G+ P+ +
Sbjct: 61 YADMVQSVDRKRLVDALSRAAVGAGRELGCLIQVALDAESGQQGERGGVAPDGVEALCDA 120
Query: 149 CRQKYQLNVEGLMCIP----PAMGNPKPHFYLLSEIARECKLTK-----LSMGMTRDFEL 199
+ L ++GLM + P G P+ F L EI+ + +S GM+ D E
Sbjct: 121 VVEAQGLRLDGLMTVAPLAGPYAGQPRAAFDRLMEISSSLRAAHPAANMVSAGMSSDLED 180
Query: 200 AIASGATSVRIGSGIFGERP 219
A+A+GAT VR+G+ + G RP
Sbjct: 181 AVAAGATHVRVGTAVLGVRP 200
>gi|4103144|gb|AAD01685.1| hypothetical protein [Helicobacter pylori NCTC 11637]
Length = 222
Score = 191 bits (487), Expect = 5e-47, Method: Composition-based stats.
Identities = 74/220 (33%), Positives = 110/220 (50%), Gaps = 8/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
K+ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 RQKIDALITKIEKARIAYSR-HHIVKIVAVSKNASLEAIQHYYNCSQRAFGENKVQDLKT 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ ++SL ++++ K A + L
Sbjct: 64 KMHSL-EHLPLEWHMIGSLQENKINALLSLKPALLDSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEGLMCIPPAMGNP---KPHFYLLS 178
+QVN+ YE KSG+MP T + + +L ++GLMCI + + F
Sbjct: 123 LLQVNSAYEESKSGVMPEGTLEIYSQISETCKRLKLKGLMCIGAHADDEKEIEKSFITTK 182
Query: 179 EIARECK-LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
++ K + LSMGM+ DFELAIA GA +RIGS +F E
Sbjct: 183 KLFDRLKNASVLSMGMSCDFELAIACGANLLRIGSFLFKE 222
>gi|251772207|gb|EES52777.1| conserved protein of unknown function [Leptospirillum
ferrodiazotrophum]
Length = 232
Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats.
Identities = 50/226 (22%), Positives = 93/226 (41%), Gaps = 13/226 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++ + I + + R D LV V+K + +R + G AEN+ +
Sbjct: 3 TIAENVEAIRADIREVSQASGRS-DLPRLVGVTKTRSLEDVRALILAGVDHLAENRWESW 61
Query: 62 KKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
++ + + FIG +Q + IE++ + LS ++
Sbjct: 62 HERLLAFPGNLWPSIFWHFIGPIQGRALKRFYRPLFCIESLDNLSHGTALSRLALESGAP 121
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK-----PHF 174
V ++VN ++G++P + L +EGLM + P G+ K F
Sbjct: 122 QSVLLEVNVCRAPGRTGVLPENLFPEIEALAALPGLRLEGLMVMGPIPGDAKSPSSSEVF 181
Query: 175 YLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + +E + + LSMGM+ D+ AI G+T VRIG +F
Sbjct: 182 GEGNALFQEARRLIPSMGTLSMGMSEDYREAIRWGSTEVRIGRSLF 227
>gi|71015126|ref|XP_758778.1| hypothetical protein UM02631.1 [Ustilago maydis 521]
gi|46098568|gb|EAK83801.1| hypothetical protein UM02631.1 [Ustilago maydis 521]
Length = 954
Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats.
Identities = 67/286 (23%), Positives = 106/286 (37%), Gaps = 73/286 (25%)
Query: 6 KLQVFKQKIENSAILA---KRPKDSVSLVAVSKMVDSKKIRVAL-SCGQVIFAENKLQEA 61
++Q +++I + LVA+SK+ I A GQ+ F EN +QE
Sbjct: 192 RVQEVRERIRKAVAKGKKIGSAGKEPRLVAISKLHPPSAILAAYRQAGQLHFGENYVQEM 251
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLE-----MI 114
K L +E ++ F+G LQSNK + ++ET+ K A++L
Sbjct: 252 VDKAKVLPRE--IRWHFVGGLQSNKGKLLASIPNLYLLETLDSVKAANVLQKALASPDAA 309
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMP-----------NQTKDFVIL-CRQKYQLNVEGLMC 162
K+ L VY+QVNT E KSG+ P + + + L + G+M
Sbjct: 310 KRDEPLRVYLQVNTSGEEAKSGLAPILAVDAEQARESDLLQLAVHVITKCPNLRLRGVMT 369
Query: 163 IPPAMG----------------NPKPHFYLLSEIAREC---------------------- 184
I A + P F L +
Sbjct: 370 IGAAANSSSADAEAAKSVDEIVSANPDFERLIQTRANLVQLLRKSEKVQTADASHIKEAY 429
Query: 185 ----------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+LSMGM+ D ++A +G+ +VR+G+ FG RP
Sbjct: 430 SELLDGSDAHGGLELSMGMSADMDVATMAGSDNVRVGTDCFGRRPA 475
>gi|326382564|ref|ZP_08204255.1| alanine racemase domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326198683|gb|EGD55866.1| alanine racemase domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
Length = 246
Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats.
Identities = 58/220 (26%), Positives = 93/220 (42%), Gaps = 14/220 (6%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD 73
I+ +A A R V+L+ V+K + + L G+ F E++ EA +K +R D
Sbjct: 23 IDAAAESADRDPGEVTLLVVTKFFPADDVLRLLDLGEREFGESREPEAGRKMAAVRAASD 82
Query: 74 VQL--RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK------QSRFLPVYIQ 125
V+ IGS+Q K I + +V + ++ L + +Q
Sbjct: 83 VEFAADMIGSVQRKKAGGIARWARRVHSVDSLALIEAFDGASSRAQDSGDRTGPLGMMLQ 142
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQ-LNVEGLMCIPPAMGNPKPHFYLLSEIA--- 181
V+ + + G+ + L ++GLM I P +P L+EI
Sbjct: 143 VSLDGDPDRGGLPVSGLAQAADRVLASPDALRLDGLMLIAPLGMDPGEAMSRLAEIRSHF 202
Query: 182 --RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
R +LS GM+ D E AIA G+T VR+G+ I G RP
Sbjct: 203 LDRYPDARELSAGMSGDLESAIAHGSTCVRVGTAIMGARP 242
>gi|154149419|ref|YP_001406195.1| hypothetical protein CHAB381_0608 [Campylobacter hominis ATCC
BAA-381]
gi|153805428|gb|ABS52435.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381]
Length = 215
Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats.
Identities = 64/218 (29%), Positives = 106/218 (48%), Gaps = 13/218 (5%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
KL +IE + A ++V L+AVSK VD+ + S GQ+ F EN++QE K+K
Sbjct: 2 KLSEISDRIEKARAGAN-IWENVKLLAVSKNVDTNAVENLFSQGQIDFGENRVQELKRKC 60
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYI 124
L ++ FIG+LQ NK++++++L V+ ++ + + A + + L +
Sbjct: 61 EILVDLP-LKWHFIGTLQKNKINQLITLKPVLWQSCNSFELAVAVDKRL---DYRLDTLL 116
Query: 125 QVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEI 180
++N E KSGI ++ D + LN+ G+M I + K F L +I
Sbjct: 117 EINVANEDSKSGISADEAIDTYRKIKAECKNLNLVGVMSIGAHSDDLKEIIKSFELTYKI 176
Query: 181 AREC---KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
SMGM+ DFE AI G+ VR+G ++
Sbjct: 177 FENLQKSGAAICSMGMSADFETAIKCGSNMVRLGRILY 214
>gi|322379239|ref|ZP_08053630.1| UPF0001 protein [Helicobacter suis HS1]
gi|322380918|ref|ZP_08054991.1| TIM-barrel fold-containing protein [Helicobacter suis HS5]
gi|321146655|gb|EFX41482.1| TIM-barrel fold-containing protein [Helicobacter suis HS5]
gi|321148379|gb|EFX42888.1| UPF0001 protein [Helicobacter suis HS1]
Length = 231
Score = 191 bits (485), Expect = 8e-47, Method: Composition-based stats.
Identities = 64/221 (28%), Positives = 112/221 (50%), Gaps = 14/221 (6%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M KL+ +IE ++ V L+AVSK ++I+ +CGQ F ENK+Q+
Sbjct: 17 MDFRKKLEQLLIRIEKASH----SNHPVQLIAVSKYATIEQIKALYACGQCAFGENKIQD 72
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD-VIETVSREKTASLLSLEMIKQSRF 119
+ K L+ ++ +G LQ NK++++++L ++ ++ + A + +
Sbjct: 73 YQTKSNALQDLP-LEWHMLGVLQHNKINKLLALKPTLLHSLHSLELAEAIQTRAKE---P 128
Query: 120 LPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVEGLMCIPPAMG---NPKPHFY 175
L +QVN E KSGI PN + ++ + + Q++++GLM I P + F
Sbjct: 129 LNALLQVNIAEESSKSGISPNLALQTYLTISQTCPQIHLKGLMVIGPLNATRVQTESVFK 188
Query: 176 LLSEIAREC-KLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
++ + LSMGM+ DFE+AIA G+ VRIG+ +F
Sbjct: 189 KAKKLFDQLPHAQILSMGMSGDFEIAIACGSNMVRIGNALF 229
>gi|301166825|emb|CBW26402.1| putative alanine racemase [Bacteriovorax marinus SJ]
Length = 237
Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats.
Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 23/206 (11%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW--DVQLRFIGSLQSNKVS 88
+AV+K I ++ G F EN++ + ++K + K+ DV FIG LQSNK++
Sbjct: 28 IAVTKYSPVDDIFISYDLGHRDFGENRVLDLQEKALEFEKKGLDDVHWHFIGHLQSNKIN 87
Query: 89 EI--VSLFDVIETVSREKTASL-LSLEMIKQSRFLPVYIQVNTGYEIQKSGIM-----PN 140
+ + I ++ L+ E + L +++QVNT E QK G
Sbjct: 88 RLLKIPNLKYIHSIDSLSLLEQILAKEDQYRGERLGLFLQVNTSAEEQKQGFSTYDSLAG 147
Query: 141 QTKDFVILCRQKYQLNVEGLMCIP-----PAMGNPKPHFYLLS----EIARECKLTK--L 189
F+ ++ ++GLM + G + F L +A + +T L
Sbjct: 148 AVNHFLD--EHGKRIYLKGLMTMGKIRTSDIEGEARECFKKLHRFKERLADDFGMTDLCL 205
Query: 190 SMGMTRDFELAIASGATSVRIGSGIF 215
SMGM+ D+E+AI G+ +R+GS ++
Sbjct: 206 SMGMSGDYEVAIEEGSDFIRVGSALY 231
>gi|302561130|ref|ZP_07313472.1| YggS family pyridoxal phosphate enzyme [Streptomyces griseoflavus
Tu4000]
gi|302478748|gb|EFL41841.1| YggS family pyridoxal phosphate enzyme [Streptomyces griseoflavus
Tu4000]
Length = 239
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 14/230 (6%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L +++I + A R ++ V+LV V+K + +R G AEN+ Q+A
Sbjct: 8 LAANLARVEERIAAACAAAGRAREEVTLVVVTKTYPADDVRALAELGVRHVAENRDQDAA 67
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ + F+G LQ+NKV +V D +++V R + + LS E ++ R +
Sbjct: 68 P-KAAACADLPLTWHFVGQLQTNKVRSVVGYADFVQSVDRSRLVTALSKEAVRAGREIGC 126
Query: 123 YIQVNTGY----EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----PKPHF 174
IQV ++ G+ P + L + L + GLM + P G + F
Sbjct: 127 LIQVALDAGEGGRGERGGVAPGGVAELAGLIARSEGLRLGGLMTVAPLTGEYAGREQAAF 186
Query: 175 YLLSEIARECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +++ + + T +S GM+ D E A+A+GAT VR+GS + G RP
Sbjct: 187 GRLMDLSTDLRRTHPTANMVSAGMSADLEQAVAAGATHVRVGSAVLGVRP 236
>gi|257483589|ref|ZP_05637630.1| hypothetical protein PsyrptA_10063 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 137
Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 68/136 (50%), Gaps = 1/136 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ + +Q+I ++A+ A R SV L+AVSK + +R A + G F EN LQEA
Sbjct: 3 TIAANISTLEQRIRDAALAANREPASVGLLAVSKTKPAGDLREAYTAGLRNFGENYLQEA 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K + L + FIG +QSNK I F + +V R K A LS + + L
Sbjct: 63 LGKQLELSDLP-LCWHFIGPIQSNKTRAIAENFAWVHSVDRLKIAQRLSEQRPEALEPLN 121
Query: 122 VYIQVNTGYEIQKSGI 137
+ IQVN E KSG
Sbjct: 122 ICIQVNVSGEASKSGC 137
>gi|184153776|ref|YP_001842117.1| hypothetical protein LAR_1121 [Lactobacillus reuteri JCM 1112]
gi|183225120|dbj|BAG25637.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
Length = 160
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 75/157 (47%), Gaps = 12/157 (7%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
IG LQ NKV I +I++V K + + E K R +P+ I+VN G E K G+
Sbjct: 1 MIGHLQRNKVKYIADYVTMIQSVDSLKLMNTIEKEGRKHDRIIPILIEVNVGEEESKFGV 60
Query: 138 MP--NQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE-------CK 185
P + Q + + GLM P +P +P F L E+ E K
Sbjct: 61 KPTLQDCMELAEASLQLPHVKLRGLMTSAPYYDDPEKTRPIFRRLRELRDEMNNQNDQLK 120
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L LSMGMT D+E+A+ G+T VR+G+ IFG R
Sbjct: 121 LDVLSMGMTHDYEIAVEEGSTCVRVGTAIFGPRDYSN 157
>gi|320094183|ref|ZP_08025992.1| FkuA protein [Actinomyces sp. oral taxon 178 str. F0338]
gi|319978880|gb|EFW10414.1| FkuA protein [Actinomyces sp. oral taxon 178 str. F0338]
Length = 245
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 20/234 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC-----GQVIFAE 55
M++ + ++ I+ +A A R D V+L +K + A +C G V+
Sbjct: 1 MTIYEAISAARRAIDEAARAAGR-TDRVALELAAKTRTPGECYEAAACLARLGGPVLVGH 59
Query: 56 NKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
N++QEA+ +R+ ++ IG LQSNK+++ ++ D +ETVS + A +
Sbjct: 60 NRVQEARATAEAVRRVDGARIHLIGPLQSNKINQALACVDAVETVSSAELARRIDARA-- 117
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KP 172
+R LPV++QVN E KSG P+ V + L + G M + + +
Sbjct: 118 -TRPLPVFVQVNVSGEATKSGCAPDAVAPVVDAVSECANLRLAGFMTVGLNSTDEAPVRR 176
Query: 173 HFYLLSEIARECKLT--------KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ L I +LSMGM+RD AIA GAT VR+G+ +FG R
Sbjct: 177 AYARLRSIRDAAAARTGIGAASLELSMGMSRDMAWAIAEGATIVRLGTAVFGAR 230
>gi|209875933|ref|XP_002139409.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209555015|gb|EEA05060.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
Length = 243
Score = 189 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 64/206 (31%), Positives = 90/206 (43%), Gaps = 17/206 (8%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
++ VSK + I F EN ++E K L + D+ FIG LQ NKV
Sbjct: 38 PRILIVSKQQPIEAILDIYMLNYRHFGENYVKELVLKSSRLPE--DIMWHFIGHLQRNKV 95
Query: 88 SEI--VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
+ V +IE++ + A L+ + R++ VYIQ+ T E K+GI ++K
Sbjct: 96 RSLLTVKNLYIIESLDSIELAYLIQKICEEMKRYVNVYIQIKTSTETTKTGINIEESKKL 155
Query: 146 VILC-RQKYQLNVEGLMCIPPAMGNP-KPHFYLLSEI-ARECKL----------TKLSMG 192
V +LN G M I N F L ++ AR LSMG
Sbjct: 156 VKYVLDHCPRLNFLGFMTIADNDKNKCSECFSKLVDLRARTLNWMTEQAYSTARCDLSMG 215
Query: 193 MTRDFELAIASGATSVRIGSGIFGER 218
M+ DFE+AI +RIGS IFG R
Sbjct: 216 MSDDFEIAITHKTNEIRIGSAIFGLR 241
>gi|149247854|ref|XP_001528315.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448269|gb|EDK42657.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 278
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 74/237 (31%), Positives = 109/237 (45%), Gaps = 27/237 (11%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + +++ + + LVAVSK+ S I + G F EN +QE
Sbjct: 44 LIDNYNAVLKQVHD------LNPKT-RLVAVSKLKPSSDIMALYAAGVRHFGENYVQELV 96
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQ-SR 118
K L K D+ FIG +Q K ++ VS +ET+ K L+ +K
Sbjct: 97 AKSQELPK--DICWHFIGGMQLGKAKDLSNKVSNLYAVETIDTFKKCKQLNSTRVKNDGE 154
Query: 119 FLPVYIQVNTGYEIQKSGI----MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN----- 169
+ VY+QVNT E QKSG +T F++ ++ +L + GLM I +
Sbjct: 155 IINVYLQVNTSGEEQKSGFIDENDMEETIKFLLNDQECSKLKLAGLMTIGSFAESTGAQG 214
Query: 170 PKPHFYLLSEIA----RECKLT-KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F L E+ + L +LSMGM+ DFE AI G++SVR+GS IFG RP +
Sbjct: 215 ENQDFKKLQELKKKLDEQYSLDLELSMGMSNDFEQAIKQGSSSVRVGSSIFGARPTK 271
>gi|66357680|ref|XP_626018.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|46227312|gb|EAK88262.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 245
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 73/240 (30%), Positives = 107/240 (44%), Gaps = 27/240 (11%)
Query: 1 MS---LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAEN 56
MS + + K +I+ + + L+ VSK + I++ Q IF EN
Sbjct: 8 MSENEVIDNYMKIKNQIKELCSGFESFPE---LLVVSKYQSEENIKLLHEKTDQKIFGEN 64
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMI 114
+QE +K L K ++ FIG LQSNKV + + +VIETV K A +L+ E
Sbjct: 65 YVQELMEKSRNLPK--SIKWHFIGHLQSNKVKTLLSIDNLEVIETVDSIKLAQVLNKECQ 122
Query: 115 KQSR-FLPVYIQVNTGYEIQKSGIMPNQTKDFVI-LCRQKYQLNVEGLMCIPPAMGN-PK 171
Q R L V IQV T E+ KSG ++ + + + L +GLM + + N
Sbjct: 123 LQGRSVLKVMIQVKTSNEVNKSGAQISEAINIFEYIISECRNLKFQGLMTMGDSDVNLTS 182
Query: 172 PHFYLLSEIARECKLTK-------------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
F + + LSMG TRD E+AI + VRIGS IFG++
Sbjct: 183 ECFNKMVNLRNIINEKISKNGNYDQSIECRLSMGTTRDMEIAIKNHTNEVRIGSAIFGDK 242
>gi|254821929|ref|ZP_05226930.1| hypothetical protein MintA_18497 [Mycobacterium intracellulare ATCC
13950]
Length = 258
Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats.
Identities = 50/239 (20%), Positives = 92/239 (38%), Gaps = 23/239 (9%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + ++ ++K + + G E++ QEA
Sbjct: 15 LTHALAAVRSRLAAAAQAAGRNAAEIEVLPITKYFPAIDVVTLSRLGCRAVGESRDQEAT 74
Query: 63 KK---------WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL-- 111
K + + +G +Q NK + +V + + L
Sbjct: 75 AKVAEVTRLLAAPERANVGNPRWHMVGHIQRNKARSVACWAHTAHSVDSTQLVTALDRGV 134
Query: 112 -EMIKQSR---FLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLNVEGLMCIP 164
+ + R + +Y+QV+ + + G+ P + L++ GLM IP
Sbjct: 135 AAALAEGRRTDPMRIYVQVSLDGDESRGGVDISRPGAVDQMCAQVEEASNLDLAGLMAIP 194
Query: 165 PAMGNPKPHFYLLSEIAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
P +P F L R LS GM+ DFE+A+ G+T VR+G+ + G R
Sbjct: 195 PLDSDPDEAFDRLQSEHRRVLESHRNAVGLSAGMSNDFEIAVKHGSTCVRVGTALLGRR 253
>gi|67594591|ref|XP_665811.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54656651|gb|EAL35580.1| hypothetical protein Chro.50329 [Cryptosporidium hominis]
Length = 238
Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats.
Identities = 72/240 (30%), Positives = 107/240 (44%), Gaps = 27/240 (11%)
Query: 1 MS---LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAEN 56
MS + + K +I+ + + L+ VSK + I++ Q IF EN
Sbjct: 1 MSENEVIDNYMKIKNQIKELCSDFESFPE---LLVVSKYQSEENIKLLHEKTDQKIFGEN 57
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMI 114
+QE +K L K ++ FIG LQSNKV + + +VIETV K A +L+ E
Sbjct: 58 YVQELMEKSRNLPK--SIKWHFIGHLQSNKVKTLLSIDNLEVIETVDSIKLAQVLNKECQ 115
Query: 115 KQSR-FLPVYIQVNTGYEIQKSGIMPNQTKDFVI-LCRQKYQLNVEGLMCIPPAMGN-PK 171
Q R L V IQV T E+ KSG ++ + + + L +GLM + + N
Sbjct: 116 LQGRSVLKVMIQVKTSNEVNKSGAKISEALNIFEYIISECRNLKFQGLMTMGDSDVNLTS 175
Query: 172 PHFYLLSEIARECKLTK-------------LSMGMTRDFELAIASGATSVRIGSGIFGER 218
F + + LSMG TRD E+AI + +RIGS IFG++
Sbjct: 176 ECFNKMVNLRNIINEKISKNGNYDQSIECRLSMGTTRDMEIAIKNHTNEIRIGSAIFGDK 235
>gi|303232631|ref|ZP_07319316.1| pyridoxal phosphate enzyme, YggS family [Atopobium vaginae
PB189-T1-4]
gi|302481117|gb|EFL44192.1| pyridoxal phosphate enzyme, YggS family [Atopobium vaginae
PB189-T1-4]
Length = 266
Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats.
Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 30/234 (12%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLR---- 69
I A A R ++L AVSK + ++K+ AL G +F EN++Q ++K LR
Sbjct: 22 IAQVAGAAGRNPQDITLCAVSKTLPAEKLPCALRAGYRVFGENRVQVLQEKLDMLRTPAC 81
Query: 70 ------------------KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
V IG+LQ NK+++++ I++++ A L+
Sbjct: 82 QSICAATSNAAAAGNPAGACAPVSFDMIGTLQKNKLNKLIGAARRIQSLADVDMARALNE 141
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP--AMGN 169
+ + V +++N E KSG + + + + L ++GLMC+ P A
Sbjct: 142 RCAVHNVRMHVLLELNISGEASKSGFSVPELMEHMSGFTELSHLVIDGLMCMAPAHARDE 201
Query: 170 PKPHFYLLSEIARECKLTK------LSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ F L+ + + LS GM+ DF++AI G+T +R+G +F
Sbjct: 202 ARACFKELTRVQARLRADYNLSCSVLSCGMSDDFDIAIQEGSTLIRLGRILFDP 255
>gi|57167731|ref|ZP_00366871.1| conserved hypothetical protein TIGR00044 [Campylobacter coli
RM2228]
gi|305433236|ref|ZP_07402392.1| YggS family pyridoxal phosphate enzyme [Campylobacter coli JV20]
gi|57020853|gb|EAL57517.1| conserved hypothetical protein TIGR00044 [Campylobacter coli
RM2228]
gi|304443937|gb|EFM36594.1| YggS family pyridoxal phosphate enzyme [Campylobacter coli JV20]
Length = 210
Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats.
Identities = 56/198 (28%), Positives = 105/198 (53%), Gaps = 12/198 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSN 85
++ LVA SK VD+ I + G F EN++Q +K L +K+ +++ FIG+LQSN
Sbjct: 12 NIRLVAASKYVDANIIEKLFTQGITEFGENQVQALVQKKEILDKKDLNIKWHFIGTLQSN 71
Query: 86 KVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-K 143
K++ ++ ++ + + K A + + + L +++N+ E+ KSG+ P+Q +
Sbjct: 72 KINLLIKQKPILWHSCNGLKIAKAMDKRL---NYKLDTLLEINSANELSKSGLNPDQAIE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEIARECK---LTKLSMGMTRDF 197
+++ + + LN+ G+M I + + F +I + + SMGM+ DF
Sbjct: 129 EYLQIQEECPNLNLCGVMSIGSHSEDQREIEKSFETTYKIYEKLQKHGAKICSMGMSNDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
E+AI G+ VR+GS +F
Sbjct: 189 EIAIKCGSNMVRLGSILF 206
>gi|306832981|ref|ZP_07466113.1| YggS family pyridoxal phosphate enzyme [Streptococcus bovis ATCC
700338]
gi|304424880|gb|EFM28014.1| YggS family pyridoxal phosphate enzyme [Streptococcus bovis ATCC
700338]
Length = 191
Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats.
Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 15/193 (7%)
Query: 34 SKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL 93
+K VDS + G EN++ K+ L+ + IGSLQ KV +++
Sbjct: 2 TKYVDSGVAARLIDTGIEHIGENRVDMFLDKYEALKDRK-LTWHLIGSLQRRKVKNVINF 60
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY 153
D + K AS + + ++QVN E K G ++ + + +
Sbjct: 61 VDYFHALDSIKLASEIQKRAE---HTIKCFLQVNISEEESKHGFKVSEIDEALTAISEFD 117
Query: 154 QLNVEGLMCIPP---AMGNPKPHFYLLSEIARECK--------LTKLSMGMTRDFELAIA 202
++ + GLM + P + + F +++ +E + T+LSMGM+ D+++AI
Sbjct: 118 KVEIVGLMTMAPKEASESEIEEIFGKANQLRQELQARQLPHMPFTELSMGMSGDYKIAIR 177
Query: 203 SGATSVRIGSGIF 215
+GAT VRIG+ F
Sbjct: 178 NGATFVRIGTSFF 190
>gi|205355561|ref|ZP_03222332.1| hypothetical protein Cj8421_0717 [Campylobacter jejuni subsp.
jejuni CG8421]
gi|205346795|gb|EDZ33427.1| hypothetical protein Cj8421_0717 [Campylobacter jejuni subsp.
jejuni CG8421]
Length = 210
Score = 187 bits (477), Expect = 7e-46, Method: Composition-based stats.
Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 23/218 (10%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ +KI+N V LVA SK VD+ I G V F EN++Q +K
Sbjct: 3 LEQILEKIKN-----------VRLVAASKYVDASIIEKLFDQGIVEFGENQVQALAQKKE 51
Query: 67 PL-RKEWDVQLRFIGSLQSNKVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYI 124
L K+ D++ FIG+LQSNK++ ++ ++ + + K A + + L +
Sbjct: 52 NLDEKKLDIKWHFIGTLQSNKINLLIKQKPILWHSCNGIKIAKAMDKRL---DYKLNTLL 108
Query: 125 QVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS----- 178
++N+ E KSG+ PNQ ++++ + + LN+ G+M I + +
Sbjct: 109 EINSANENSKSGLDPNQAVEEYLQIQEECSNLNLCGVMSIGSHSQDKENIIKSFETTFKI 168
Query: 179 -EIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
EI ++ SMGM+ DFE+AI G+ VR+GS +F
Sbjct: 169 YEILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILF 206
>gi|167837775|ref|ZP_02464658.1| hypothetical protein Bpse38_14897 [Burkholderia thailandensis
MSMB43]
Length = 145
Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L + ++I+++A A R +V+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARFASVHRRIDDAARAAGRDPRAVTLLAVSKTFPADAVRAAHAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + TV R K A LS +
Sbjct: 61 ESIDKIDTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTVDRLKIAQRLSGQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQT 142
L V +QVN E KSG+ P
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADA 144
>gi|300087752|ref|YP_003758274.1| alanine racemase domain-containing protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527485|gb|ADJ25953.1| alanine racemase domain protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 221
Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 67/225 (29%), Positives = 99/225 (44%), Gaps = 20/225 (8%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ ++ K++I +V++ AV K +I AL G I A N +QEA+
Sbjct: 5 ITKNIECIKKEI----------PSTVTIEAVVKKRSIPEITTALQSGVDIVAFNYVQEAR 54
Query: 63 KKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ L K + + +IG LQ NKV++ LFD IET+ A L+ K +P
Sbjct: 55 EIIGCLNKSFIPFKSHYIGHLQKNKVAKSTELFDFIETIDDTTLAQSLNNTCRKSGVIMP 114
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFYLLSE 179
V IQVN G E KSG P+ L + G+M + P + + +P F
Sbjct: 115 VLIQVNIGRESSKSGAWPDNVIQLAETISCLPNLCLRGIMTMGPEVPSIRLRPFFVETKT 174
Query: 180 IAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ E LSMGM+ + LAI GA +R+G IF
Sbjct: 175 LLDELVSRCLVSGPEILSMGMSDSYMLAIEEGANFIRLGKAIFSP 219
>gi|170781772|ref|YP_001710104.1| hypothetical protein CMS_1377 [Clavibacter michiganensis subsp.
sepedonicus]
gi|169156340|emb|CAQ01488.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
sepedonicus]
Length = 213
Score = 186 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 57/214 (26%), Positives = 94/214 (43%), Gaps = 10/214 (4%)
Query: 11 KQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRK 70
+ + + A R D V+ + V+K +R + G E++ QEA+ K L +
Sbjct: 2 QADVADGIRAAGRRPDEVTTIVVTKFQPVSLLRALVDLGVRDLGESRHQEAQGKAAEL-E 60
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
V F+G LQ K ++ VI +V R LS + + V++QVN
Sbjct: 61 GSGVAWHFVGQLQGKKARQVRRYASVIHSVDRPSLIDALSSDEQET----RVFLQVNLTA 116
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK----- 185
+ + G+ P + + + V G+M + P G P+ F L I+ + +
Sbjct: 117 DEGRGGVPPAEAEALAEHAAAAPGIRVLGVMAVAPDDGEPRRAFARLRGISDDVRRILPD 176
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+S GM+ D A+ GAT +RIGS I G+RP
Sbjct: 177 ARAISAGMSGDLREALLEGATHLRIGSAITGKRP 210
>gi|183220725|ref|YP_001838721.1| hypothetical protein LEPBI_I1335 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189910826|ref|YP_001962381.1| PLP dependent enzyme [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167775502|gb|ABZ93803.1| PLP dependent enzyme [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167779147|gb|ABZ97445.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 232
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 62/206 (30%), Positives = 92/206 (44%), Gaps = 11/206 (5%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWD-----VQLRFIGSL 82
+L+AVSK + +R A G F EN L EA +K+ LR+E+ V L IG +
Sbjct: 24 PTLIAVSKTKPYQVVRDAYMQGIREFGENYLPEAIEKFTKLREEFPESVNTVNLHHIGPV 83
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
QS + ++ +F V + + L K+ + + ++Q N E K G
Sbjct: 84 QSGTLRKLFGIFSYTHGVGTFSSLTELQKRAEKEKKTIRYFLQTNLTAESTKHGFSLETL 143
Query: 143 KDFVILCR--QKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIAR-ECKLTKLSMGMTRD 196
+ Q EG M + P+ G+ K F L+ KLSMGM+ D
Sbjct: 144 LEKKEELSLYQNEFCIWEGFMGMGPSSGDLLQTKEVFSKLTSFRDTHFPNLKLSMGMSGD 203
Query: 197 FELAIASGATSVRIGSGIFGERPCQT 222
++LA G+ VRIGS IFG+R T
Sbjct: 204 YQLAAELGSNFVRIGSKIFGDRDYGT 229
>gi|157415006|ref|YP_001482262.1| hypothetical protein C8J_0686 [Campylobacter jejuni subsp. jejuni
81116]
gi|157385970|gb|ABV52285.1| hypothetical protein C8J_0686 [Campylobacter jejuni subsp. jejuni
81116]
gi|307747644|gb|ADN90914.1| Putative uncharacterized protein [Campylobacter jejuni subsp.
jejuni M1]
gi|315931921|gb|EFV10876.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
327]
Length = 210
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 60/198 (30%), Positives = 101/198 (51%), Gaps = 12/198 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSN 85
+V LVA SK VD+ I G V F EN++Q +K L K+ D++ FIG+LQSN
Sbjct: 12 NVRLVAASKYVDASTIEKLFDQGIVEFGENQVQALAQKKENLDEKKLDIKWHFIGTLQSN 71
Query: 86 KVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TK 143
K++ ++ ++ + + K A + + L +++N+ E KSG+ PNQ +
Sbjct: 72 KINLLIKQKPILWHSCNGIKIAKAMDKRL---DYKLNTLLEINSANENSKSGLDPNQAVE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS------EIARECKLTKLSMGMTRDF 197
+++ + + LN+ G+M I + + EI ++ SMGM+ DF
Sbjct: 129 EYLQIQEECSNLNLCGVMSIGSHSQDKESIIKSFETTFKIYEILQKHGAKICSMGMSNDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
E+AI G+ VR+GS +F
Sbjct: 189 EIAIKCGSNLVRLGSILF 206
>gi|269794410|ref|YP_003313865.1| pyridoxal phosphate enzyme, YggS family [Sanguibacter keddieii DSM
10542]
gi|269096595|gb|ACZ21031.1| pyridoxal phosphate enzyme, YggS family [Sanguibacter keddieii DSM
10542]
Length = 273
Score = 185 bits (471), Expect = 3e-45, Method: Composition-based stats.
Identities = 70/258 (27%), Positives = 106/258 (41%), Gaps = 42/258 (16%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDS--------VSLVAVSKMVDSKKIRVALSC----- 48
S + L +IE + A R V L+ +K D+ +R A+
Sbjct: 17 SFADALARVHDRIERARTSAGRDDRDGSDGSDDKVRLLLATKTQDADDVRAAVLADRAAG 76
Query: 49 --GQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD-----VIETVS 101
G+V+ EN++QE K L + + IG+LQSNKV+ + +ETV
Sbjct: 77 RPGEVLVGENRVQELTAKAPALAD-LALTVHLIGALQSNKVNHALRALAQHRQACVETVD 135
Query: 102 REKTASLLSLE----MIKQSR-----FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK 152
A + + L VY+QVN E K+G+ P + + +
Sbjct: 136 SIALAEKIGSRVLTAAAEAGDGSTDIPLDVYVQVNVSGEESKAGVSPEAAVELALAVAEV 195
Query: 153 YQLNVEGLMCIPPAMGNP---KPHFYLLSEIAREC---------KLTKLSMGMTRDFELA 200
L + G M I + + F L E+ E T+LSMGM++D E A
Sbjct: 196 DGLRLSGFMTIGARSSDERLVRAGFARLRELRDEVLGSGAPGTSAATELSMGMSQDLEWA 255
Query: 201 IASGATSVRIGSGIFGER 218
+A GAT VR+GS +FG R
Sbjct: 256 VAEGATLVRVGSAVFGAR 273
>gi|32490829|ref|NP_871083.1| hypothetical protein WGLp080 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166035|dbj|BAC24226.1| yggS [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 233
Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats.
Identities = 60/227 (26%), Positives = 96/227 (42%), Gaps = 16/227 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ + KI N + R +++L+ SK +I+ A Q F EN +QEA
Sbjct: 5 IKKNLEKIQNKIYNLSKYYNRNPKNINLLLASKSRSVYEIKFANEYNQNNFGENYVQEAI 64
Query: 63 KKWIPLRKEW---DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
KK + +K ++ IG +QSNK I FD T++ K + L+ + +
Sbjct: 65 KKIVWFKKNHPKNNLIWHMIGQIQSNKSKLIAKYFDWCHTINNIKISKKLNNYRKIKKKP 124
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGNPKP------ 172
L V IQ+N E + G + + ++ L ++G+M P +
Sbjct: 125 LKVLIQININEEKNRYGSSLKEFDNIYEFIFQKCNNLMLKGIMIFPIITDDLNKKIYNFN 184
Query: 173 ----HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
F L + LS G T D + AI G+T +RIG GIF
Sbjct: 185 IIIDKFNTLKN--KNSNFNVLSFGTTSDIDHAIKIGSTLLRIGKGIF 229
>gi|86151834|ref|ZP_01070048.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni 260.94]
gi|86153552|ref|ZP_01071756.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni HB93-13]
gi|121613343|ref|YP_001000415.1| hypothetical protein CJJ81176_0742 [Campylobacter jejuni subsp.
jejuni 81-176]
gi|167005357|ref|ZP_02271115.1| hypothetical protein Cjejjejuni_03810 [Campylobacter jejuni subsp.
jejuni 81-176]
gi|283956128|ref|ZP_06373615.1| hypothetical protein C1336_000100090 [Campylobacter jejuni subsp.
jejuni 1336]
gi|85841463|gb|EAQ58711.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni 260.94]
gi|85843278|gb|EAQ60489.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni HB93-13]
gi|87249354|gb|EAQ72314.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni 81-176]
gi|283792448|gb|EFC31230.1| hypothetical protein C1336_000100090 [Campylobacter jejuni subsp.
jejuni 1336]
Length = 210
Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats.
Identities = 60/198 (30%), Positives = 101/198 (51%), Gaps = 12/198 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSN 85
+V LVA SK VD+ I G V F EN++Q +K L K+ D++ FIG+LQSN
Sbjct: 12 NVRLVAASKYVDASIIEKLFDQGIVEFGENQVQALAQKKENLDEKKLDIKWHFIGTLQSN 71
Query: 86 KVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TK 143
K++ ++ ++ + + K A + + L +++N+ E KSG+ PNQ +
Sbjct: 72 KINLLIKQKPILWHSCNGIKIAKAMDKRL---DYKLNTLLEINSANENSKSGLDPNQAVE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS------EIARECKLTKLSMGMTRDF 197
+++ + + LN+ G+M I + + EI ++ SMGM+ DF
Sbjct: 129 EYLQIQEECSNLNLCGVMSIGSHSQDKESIIKSFETTFKIYEILQKHGAKICSMGMSNDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
E+AI G+ VR+GS +F
Sbjct: 189 EIAIKCGSNLVRLGSILF 206
>gi|57237021|ref|YP_178823.1| hypothetical protein CJE0819 [Campylobacter jejuni RM1221]
gi|86149761|ref|ZP_01067990.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|88596934|ref|ZP_01100170.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni 84-25]
gi|148926684|ref|ZP_01810365.1| hypothetical protein Cj8486_0738c [Campylobacter jejuni subsp.
jejuni CG8486]
gi|218562358|ref|YP_002344137.1| hypothetical protein Cj0719c [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|57165825|gb|AAW34604.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
RM1221]
gi|85839579|gb|EAQ56839.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni CF93-6]
gi|88190623|gb|EAQ94596.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. jejuni 84-25]
gi|112360064|emb|CAL34856.1| conserved hypothetical protein Cj0719c [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|145845203|gb|EDK22298.1| hypothetical protein Cj8486_0738c [Campylobacter jejuni subsp.
jejuni CG8486]
gi|284925975|gb|ADC28327.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
IA3902]
gi|315058182|gb|ADT72511.1| hypothetical protein CJS3_0770 [Campylobacter jejuni subsp. jejuni
S3]
gi|315926835|gb|EFV06209.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|315930590|gb|EFV09622.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
305]
Length = 210
Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats.
Identities = 60/198 (30%), Positives = 101/198 (51%), Gaps = 12/198 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSN 85
+V LVA SK VD+ I G V F EN++Q +K L K+ D++ FIG+LQSN
Sbjct: 12 NVRLVAASKYVDASIIEKLFDQGIVEFGENQVQALAQKKENLDEKKLDIKWHFIGTLQSN 71
Query: 86 KVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TK 143
K++ ++ ++ + + K A + + L +++N+ E KSG+ PNQ +
Sbjct: 72 KINLLIKQKPILWHSCNGIKIAKAMDKRL---DYKLNTLLEINSANENSKSGLDPNQAVE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS------EIARECKLTKLSMGMTRDF 197
+++ + + LN+ G+M I + + EI ++ SMGM+ DF
Sbjct: 129 EYLQIQEECSNLNLCGVMSIGSHSQDKENIIKSFETTFKIYEILQKHGAKICSMGMSNDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
E+AI G+ VR+GS +F
Sbjct: 189 EIAIKCGSNLVRLGSILF 206
>gi|311087925|gb|ADP68004.1| hypothetical protein CWU_03555 [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 200
Score = 185 bits (470), Expect = 4e-45, Method: Composition-based stats.
Identities = 61/196 (31%), Positives = 94/196 (47%), Gaps = 9/196 (4%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
+++VAVSK + I A+ G F EN LQE+ K L+K ++ FIG +QSNK
Sbjct: 4 ITIVAVSKNRNINNIEEAIRSGINNFGENYLQESLIKIENLKKYKNITWHFIGKIQSNKT 63
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
+I F +TV REK A LL+ K + V IQ+N E+Q + +Q ++
Sbjct: 64 KKIAQNFSWCQTVDREKIAVLLNKFRPKNLPPINVLIQINNLKELQNNRY-IDQYQELAQ 122
Query: 148 LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-----LTKLSMGMTRDFEL 199
L LN+ G+M +P N + + I K + LS+G + D +
Sbjct: 123 LILSMPNLNLRGIMAVPSIKTNVIENNLQYEKIKTIFNRFKRQYSSVDTLSLGTSVDIKE 182
Query: 200 AIASGATSVRIGSGIF 215
++ + + VRIG IF
Sbjct: 183 SLLATSNMVRIGRNIF 198
>gi|15617142|ref|NP_240355.1| hypothetical protein BU549 [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681894|ref|YP_002468280.1| hypothetical protein BUAP5A_542 [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219682449|ref|YP_002468833.1| hypothetical protein BUAPTUC7_543 [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|257471599|ref|ZP_05635598.1| hypothetical protein BaphL_02730 [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|11387310|sp|P57614|Y549_BUCAI RecName: Full=UPF0001 protein BU549
gi|25403647|pir||A84994 hypothetical protein [imported] - Buchnera sp. (strain APS)
gi|10039207|dbj|BAB13241.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
gi|219622182|gb|ACL30338.1| hypothetical protein BUAPTUC7_543 [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624737|gb|ACL30892.1| hypothetical protein BUAP5A_542 [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311086270|gb|ADP66352.1| hypothetical protein CWO_02885 [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086845|gb|ADP66926.1| hypothetical protein CWQ_02920 [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|311087434|gb|ADP67514.1| hypothetical protein CWS_02830 [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
Length = 200
Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats.
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 9/196 (4%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
++++AVSK + I A+ G F EN LQE+ K L+K ++ FIG +QSNK
Sbjct: 4 ITIIAVSKNRNINNIEEAIRSGINNFGENYLQESLIKIENLKKYKNITWHFIGKIQSNKT 63
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
+I F +TV REK A LL+ K + V IQ+N E+Q + +Q ++
Sbjct: 64 KKIAQNFSWCQTVDREKIAVLLNKFRPKNLPPINVLIQINNLKELQNNRY-IDQYQELAQ 122
Query: 148 LCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-----LTKLSMGMTRDFEL 199
L LN+ G+M +P N + + I K + LS+G + D +
Sbjct: 123 LILSMPNLNLRGIMAVPSIKTNVIENNLQYEKIKTIFNRFKRQYSSVDTLSLGTSVDIKE 182
Query: 200 AIASGATSVRIGSGIF 215
++ + + VRIG IF
Sbjct: 183 SLLATSNMVRIGRNIF 198
>gi|291301474|ref|YP_003512752.1| alanine racemase domain-containing protein [Stackebrandtia
nassauensis DSM 44728]
gi|290570694|gb|ADD43659.1| alanine racemase domain protein [Stackebrandtia nassauensis DSM
44728]
Length = 249
Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats.
Identities = 58/224 (25%), Positives = 96/224 (42%), Gaps = 7/224 (3%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L L+ + I + A R V LV VSK + + G F EN+ QEA
Sbjct: 17 LAENLRATRADIAAACEAAGRDPSGVELVVVSKTHPAADVCALAELGVRGFGENRDQEAA 76
Query: 63 KKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM-IKQSRFL 120
K + +V+ F+G LQ NK +VS ++E+V R + L E ++ L
Sbjct: 77 AKAAEVAASGTEVRWHFVGRLQRNKCRSVVSYASMVESVDRSSLVTALDAEARSQRDSPL 136
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V +Q++ + + G+ + L + G+M + P P F ++
Sbjct: 137 DVLMQLSVDSDTARGGVAEADDEALAAQILACQGLRLRGVMAVAPLGWEPGRAFEAVARR 196
Query: 181 ARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
A + + +S GM+ D+ AI+ GAT +R+GS + G R
Sbjct: 197 AAKIQALAPNANIVSAGMSADYAEAISFGATEIRLGSKLLGRRD 240
>gi|283953914|ref|ZP_06371443.1| hypothetical protein C414_000040016 [Campylobacter jejuni subsp.
jejuni 414]
gi|283794519|gb|EFC33259.1| hypothetical protein C414_000040016 [Campylobacter jejuni subsp.
jejuni 414]
Length = 210
Score = 183 bits (466), Expect = 1e-44, Method: Composition-based stats.
Identities = 56/198 (28%), Positives = 102/198 (51%), Gaps = 12/198 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSN 85
++ L+A SK VD+ + + G V F EN++Q +K L K+ +++ FIG+LQSN
Sbjct: 12 NIRLIAASKYVDASMVEKLFNQGVVEFGENQVQALAQKKENLNEKKLNIKWHFIGTLQSN 71
Query: 86 KVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-K 143
K++ ++ ++ + + K A + + L +++N+ E KSG+ PNQ +
Sbjct: 72 KINLLIKQKPILWHSCNGIKIAKAMDKRL---DYKLNTLLEINSANENSKSGLDPNQAIE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS------EIARECKLTKLSMGMTRDF 197
+++ + + LN+ G+M I + + EI ++ SMGM+ DF
Sbjct: 129 EYLQIQEECPNLNLCGVMSIGSHSQDKENIIKSFETTFKIYEILQKHGAKICSMGMSNDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
E+AI G+ VR+GS +F
Sbjct: 189 EIAIKCGSNLVRLGSILF 206
>gi|153951807|ref|YP_001398337.1| hypothetical protein JJD26997_1287 [Campylobacter jejuni subsp.
doylei 269.97]
gi|152939253|gb|ABS43994.1| conserved hypothetical protein TIGR00044 [Campylobacter jejuni
subsp. doylei 269.97]
Length = 210
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 12/198 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSN 85
++ LVA SK VD+ I G V F EN++Q +K L K+ +++ FIG+LQSN
Sbjct: 12 NIRLVAASKYVDASIIEKLFDQGIVEFGENQVQALAQKKENLDEKKLNIKWHFIGTLQSN 71
Query: 86 KVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-K 143
K++ ++ ++ + + K A + + L +++N+ E KSG+ PNQ +
Sbjct: 72 KINLLIKQKPILWHSCNGIKIAKAMDKRL---DYKLNTLLEINSANENSKSGLNPNQAIE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS------EIARECKLTKLSMGMTRDF 197
+++ + + LN+ G+M I + + EI ++ SMGM+ DF
Sbjct: 129 EYLQIQEECPNLNLCGVMSIGSHSQDRESIIKSFETTFKIYEILQKHGAKICSMGMSNDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
E+AI G+ VR+GS +F
Sbjct: 189 EIAIKCGSNLVRLGSILF 206
>gi|87303805|ref|ZP_01086531.1| hypothetical protein WH5701_00110 [Synechococcus sp. WH 5701]
gi|87281679|gb|EAQ73667.1| hypothetical protein WH5701_00110 [Synechococcus sp. WH 5701]
Length = 171
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 4/165 (2%)
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QEA +K L + +Q FIG LQ NKV +V F VI +V A +S +++
Sbjct: 2 QEAVEKQ-ALLSDLKLQWHFIGRLQRNKVRGVVKAFSVIHSVDSLALAERVSRIAVEEGC 60
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKPHFY 175
V +QV + K G+ P++ L + GLM + P + F
Sbjct: 61 CPDVLLQVKFREDPTKGGMEPSELLSAWPQLCALPSLRLMGLMTMAPLGLEGEERQSLFV 120
Query: 176 LLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+A + L SMGM+ D+ A+A+G+T +R+GS +FG+R
Sbjct: 121 ECRSLADQLGLPDCSMGMSGDWTEAVAAGSTWLRLGSAVFGQRDV 165
>gi|27904971|ref|NP_778097.1| hypothetical protein bbp497 [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|34222840|sp|Q89A48|Y497_BUCBP RecName: Full=UPF0001 protein bbp_497
gi|27904369|gb|AAO27202.1| hypothetical protein bbp_497 [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 223
Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 61/224 (27%), Positives = 98/224 (43%), Gaps = 15/224 (6%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ ++ KQKI N + K + L+AVSK I+ A+ CGQ F EN +QE+
Sbjct: 3 NIQKNIKKLKQKITNISKKFKINTQKIKLLAVSKNRSVNDIKKAILCGQNSFGENYVQES 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ K +++ +IG +QSNK I F T++ +KTA LL+ L
Sbjct: 63 QPKIKLFN---NIEWHYIGQIQSNKAHIIAKNFSWCHTITNKKTAVLLNKYRPYSLPKLN 119
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--------- 172
IQ+N K LN+ G+M +P
Sbjct: 120 TLIQINIRDNTINIDDDIETIKQLAKTINSLDNLNLRGIMAMPYFKNTYLEQIQSYKYIH 179
Query: 173 -HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+F +L + + + +S+G + D + A+ SG+T +RIGS IF
Sbjct: 180 LYFDILKK--KYTYIDTVSLGTSHDIQAALYSGSTLLRIGSSIF 221
>gi|291519441|emb|CBK74662.1| Predicted enzyme with a TIM-barrel fold [Butyrivibrio fibrisolvens
16/4]
Length = 164
Score = 181 bits (461), Expect = 6e-44, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 11/160 (6%)
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
D+ IG LQ NKV IV +I +V + A ++++ K+ +P+ I+VN E
Sbjct: 4 DIDWHLIGHLQRNKVKYIVDQVKLIHSVDSYRLAEEINIQAKKKGVVVPILIEVNAANEA 63
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA----------- 181
K G+ +T +++ GLM I P + P+ + + +I
Sbjct: 64 TKFGVKVEETAQLCEEIAHLDAVHIMGLMTIAPNVVVPEENRAIFHKIKALSVDIASKNI 123
Query: 182 RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ LSMGMT DFE+AI GAT VR+G+ IFGER
Sbjct: 124 DNVDMRILSMGMTNDFEVAIEEGATHVRVGTAIFGERNYS 163
>gi|289705620|ref|ZP_06502010.1| pyridoxal phosphate enzyme, YggS family [Micrococcus luteus SK58]
gi|289557670|gb|EFD50971.1| pyridoxal phosphate enzyme, YggS family [Micrococcus luteus SK58]
Length = 262
Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats.
Identities = 63/243 (25%), Positives = 100/243 (41%), Gaps = 26/243 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + L + +I ++A A R +LV V+K ++ + + G EN+ QEA+
Sbjct: 19 IADALAAVRARIADAARDAGRE-AEPALVVVTKTHPAEDVVRLAALGVTDVGENRDQEAR 77
Query: 63 KKWIPLRKEWDV---QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM------ 113
K + + F+G LQ+NK +V V+E+V R A LS +
Sbjct: 78 PKAEAVAAALGADAPRWHFVGQLQTNKAKYVVRYASVVESVDRPDLAEALSRALLLRRER 137
Query: 114 --IKQSRFLPVYIQVNTGYEIQ---------KSGIMPNQTKDFVILCRQKYQLNVEGLMC 162
L +QV+ + G P + L + GLMC
Sbjct: 138 EPEAAIPDLECLVQVDVDDRADEDRPEGIGPRGGARPEDVPALADVVAGLPGLRLGGLMC 197
Query: 163 IPPAMGNPKPHFYLLSEI-----ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ P +P+ F L+ + + T LSMGM+ D E A+ +GAT VRIGS + G
Sbjct: 198 VAPRGLDPEDAFRRLAALGAGLRQTHPEATTLSMGMSADLEAAVRAGATQVRIGSDVLGA 257
Query: 218 RPC 220
R
Sbjct: 258 RDA 260
>gi|257791830|ref|YP_003182436.1| alanine racemase domain-containing protein [Eggerthella lenta DSM
2243]
gi|257475727|gb|ACV56047.1| alanine racemase domain protein [Eggerthella lenta DSM 2243]
Length = 234
Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats.
Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 15/189 (7%)
Query: 39 SKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE 98
+ ++ A+ G F EN+ + K ++ FIG++QS ++ +IV ++
Sbjct: 39 ADEVAEAIEAGAHDFGENRPDSLEGKRARFPQQ---TWHFIGNIQSRRIPDIVRDAALVH 95
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
++ +++ + V ++VN E KSG+ P++ + C + V
Sbjct: 96 SLYQQRHVPKFDAAAAASGKVQDVLLEVNVSGEASKSGLAPSEVAGMLEYCAGFPHVRVR 155
Query: 159 GLMCIPPAMG--NPKPHFYLLSEIARECKL----------TKLSMGMTRDFELAIASGAT 206
GLM + P + F L+ + E +L +LSMGM+ D+ AIA GAT
Sbjct: 156 GLMTMAPQGDAQRARACFADLARLRDEVRLGLDGEQAAVFDELSMGMSEDWHEAIAEGAT 215
Query: 207 SVRIGSGIF 215
VRIG +F
Sbjct: 216 IVRIGRALF 224
>gi|325830003|ref|ZP_08163461.1| pyridoxal phosphate enzyme, YggS family [Eggerthella sp. HGA1]
gi|325488170|gb|EGC90607.1| pyridoxal phosphate enzyme, YggS family [Eggerthella sp. HGA1]
Length = 234
Score = 180 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 85/189 (44%), Gaps = 15/189 (7%)
Query: 39 SKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE 98
+ ++ A+ G F EN+ + K ++ FIG++QS ++ +IV ++
Sbjct: 39 ADEVAEAIEAGAHDFGENRPDSLEGKRARFPQQ---TWHFIGNIQSRRIPDIVRDAALVH 95
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
++ +++ + V ++VN E KSG+ P++ + C + V
Sbjct: 96 SLYQQRHVPKFDAAAAASGKVQDVLLEVNVSGEASKSGLAPSEVAGMLEYCAGFPHVRVR 155
Query: 159 GLMCIPPAMG--NPKPHFYLLSEIARECKL----------TKLSMGMTRDFELAIASGAT 206
GLM + P + F L+ + + +L +LSMGM+ D+ AIA GAT
Sbjct: 156 GLMTMAPQGDAQRARACFADLARLRDKVRLGLDGEQAAVFDELSMGMSEDWHEAIAEGAT 215
Query: 207 SVRIGSGIF 215
VRIG +F
Sbjct: 216 IVRIGRALF 224
>gi|73669788|ref|YP_305803.1| hypothetical protein Mbar_A2299 [Methanosarcina barkeri str.
Fusaro]
gi|72396950|gb|AAZ71223.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
Length = 214
Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 13/201 (6%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
V+LVA K +I A+ G N Q+ K +++ FIG+LQ
Sbjct: 14 PPDVTLVAAVKYASKIQIDEAIKVGVTDIGFNHYQQMKDLAPYYP--PEIKTHFIGTLQL 71
Query: 85 NKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
NK ++V+L +IE+V + A ++ + R + IQV T E + +G+ P
Sbjct: 72 NKAKKVVNLNPYLIESVDSYELAEKINNAAKENKRIQKILIQVKTD-EKKHTGLEPGDLL 130
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK------LTKLSMGMT 194
+ L+ EGLM IPP +P + +F L ++ + + L LSMGMT
Sbjct: 131 KLLDQISTLEYLSFEGLMTIPPKNEDPEDSRKYFKELKDLKDKAEKHLKKHLQYLSMGMT 190
Query: 195 RDFELAIASGATSVRIGSGIF 215
D+++AI GA+ VRIG IF
Sbjct: 191 DDYQIAIEEGASIVRIGRKIF 211
>gi|317489830|ref|ZP_07948327.1| alanine racemase domain-containing protein [Eggerthella sp.
1_3_56FAA]
gi|316911079|gb|EFV32691.1| alanine racemase domain-containing protein [Eggerthella sp.
1_3_56FAA]
Length = 234
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 85/189 (44%), Gaps = 15/189 (7%)
Query: 39 SKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE 98
+ ++ A+ G F EN+ + K ++ FIG++QS ++ +IV ++
Sbjct: 39 ADEVAEAIEAGAHDFGENRPDSLEGKRARFPQQ---TWHFIGNIQSRRIPDIVRDAALVH 95
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
++ +++ + V ++VN E KSG+ P++ + C + V
Sbjct: 96 SLYQQRHVPKFDAAAAASGKVQDVLLEVNVSGEASKSGLAPSEVAGMLEYCAGFPHVRVR 155
Query: 159 GLMCIPPAMG--NPKPHFYLLSEIARECKL----------TKLSMGMTRDFELAIASGAT 206
GLM + P + F L+ + + +L +LSMGM+ D+ AIA GAT
Sbjct: 156 GLMTMAPQGDAQRARACFADLARLRDKVRLGLDGEQAAVFDELSMGMSEDWHEAIAEGAT 215
Query: 207 SVRIGSGIF 215
VRIG +F
Sbjct: 216 IVRIGRALF 224
>gi|256372019|ref|YP_003109843.1| alanine racemase domain protein [Acidimicrobium ferrooxidans DSM
10331]
gi|256008603|gb|ACU54170.1| alanine racemase domain protein [Acidimicrobium ferrooxidans DSM
10331]
Length = 230
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 62/224 (27%), Positives = 100/224 (44%), Gaps = 14/224 (6%)
Query: 1 MSLGNKLQVFKQKIEN--SAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKL 58
M+L +L+ ++ IE + + RP +V V+K + +R A+ G EN
Sbjct: 1 MNLVEQLRERRRAIEAEVATLAPVRPP---RIVCVTKTHPVETVRAAVEAGNRELGENYA 57
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E +K LR DV+ FIG LQ ++ ++ V+ET+SR A L+
Sbjct: 58 SELAEKAAALRD-LDVRWHFIGHLQRRQIKQVSGAASVVETLSRVVEAERLA----ALGF 112
Query: 119 FLPVYIQVNT-GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP--KPHFY 175
V++QV +SG+ + V R L V G+M + + F
Sbjct: 113 DGEVFVQVAPPDAPATRSGVPREGAPELVAAARSL-GLRVVGVMGVALPGEEAPVRTFFR 171
Query: 176 LLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
L +A E +L + S GM+ D+ A GAT +R+G+ + G RP
Sbjct: 172 SLVALADELELPERSFGMSADWRWATTEGATILRLGTALLGPRP 215
>gi|239917856|ref|YP_002957414.1| conserved hypothetical protein TIGR00044 [Micrococcus luteus NCTC
2665]
gi|281413651|ref|ZP_06245393.1| hypothetical protein MlutN2_00347 [Micrococcus luteus NCTC 2665]
gi|239839063|gb|ACS30860.1| conserved hypothetical protein TIGR00044 [Micrococcus luteus NCTC
2665]
Length = 262
Score = 179 bits (455), Expect = 2e-43, Method: Composition-based stats.
Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 26/224 (11%)
Query: 22 KRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV---QLRF 78
R +LV V+K ++ + + G EN+ QEA+ K + + F
Sbjct: 38 GRE-AEPALVVVTKTHPAEDVVRLAALGVTDVGENRDQEARPKAEAVAAALGADAPRWHF 96
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM--------IKQSRFLPVYIQVNTGY 130
+G LQ+NK +V V+E+V R + A LS + L +QV+
Sbjct: 97 VGQLQTNKAKYVVRYASVVESVDRPELAEALSRALLLRREREPEAAIPDLECLVQVDVDD 156
Query: 131 EIQ---------KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
+ G P L + GLMC+ P +P+ F L+ +
Sbjct: 157 RADEDRPEGIGPRGGARPEDVPALTDAIAGLPGLRLGGLMCVAPRGLDPEDAFRRLAALG 216
Query: 182 RECKLTK-----LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ T LSMGM+ D E A+ +GAT VRIGS + G R
Sbjct: 217 AHLRQTHPEATALSMGMSADLEAAVRAGATQVRIGSDVLGARDA 260
>gi|57900473|dbj|BAD87885.1| alanine racemase-like [Oryza sativa Japonica Group]
Length = 192
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 66/222 (29%), Positives = 90/222 (40%), Gaps = 52/222 (23%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
L+ + +A + R ++V +VAV K +R G F EN +QE K
Sbjct: 14 LRAVLGRAAKAAERSGRAAEAVRVVAVGKTKPVSMVRELYDAGHRCFGENYVQEFVTKAP 73
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEI---VSLFDVIETVSREKTASLLSLEMIKQSR-FLPV 122
L + D++ FIG LQSNKV + V ++E V K A+ L + R L V
Sbjct: 74 QLPE--DIRWHFIGHLQSNKVKSLLAAVPNLHMVEGVDNVKIANHLDRAVSSLGRDPLKV 131
Query: 123 YIQ--VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+Q VN E+ K+ MP + F
Sbjct: 132 LVQALVNCKLEVCKAIDMPAE-------------------------------QF------ 154
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+LSMGM+ DFE AI G+TSVRIGS IFG R
Sbjct: 155 -------ELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYPN 189
>gi|58581040|ref|YP_200056.1| hypothetical protein XOO1417 [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58425634|gb|AAW74671.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 176
Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats.
Identities = 59/168 (35%), Positives = 77/168 (45%), Gaps = 9/168 (5%)
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
QEA K LR ++ IG LQSNK FD ++TV R K LL+
Sbjct: 2 QEADAKIAQLRA-LGLEWHLIGHLQSNKAELASQCFDWVQTVDRAKLIPLLARHRPDDCA 60
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPK--PHFY 175
L V IQVN E K G P + +L + GLM IP P + F
Sbjct: 61 PLNVLIQVNIDDEDSKHGCAPEAIDSLAAAIALQPRLQLRGLMAIPAPFPDQARRGAAFT 120
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+ + + K + LSMGM+ DF AIA+GAT VR+G+ +FG R
Sbjct: 121 RMQVLFEQLKTRYRQVDTLSMGMSSDFAEAIAAGATMVRMGTALFGAR 168
>gi|71030978|ref|XP_765131.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352087|gb|EAN32848.1| hypothetical protein, conserved [Theileria parva]
Length = 215
Score = 178 bits (453), Expect = 4e-43, Method: Composition-based stats.
Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 17/202 (8%)
Query: 28 VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV 87
V L+ V+K I GQ+ F E++++E +K L + V+ FIG LQ+NK
Sbjct: 19 VELLVVTKNCTVDAIGQLFKMGQLDFGESRVRELCEKAAQL--DSTVKWHFIGHLQTNKC 76
Query: 88 SEI--VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT--- 142
+++ + +I++V + + LS K +R + V IQVNT + + GI
Sbjct: 77 AKLLQIPNLHMIQSVDSMELFNKLSQLTTKLNRQINVLIQVNTTLKPTQYGIDYRNITLI 136
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLT-------KLSMGMTR 195
V + ++ GLM I K F+ L+ + + + +SMGM+
Sbjct: 137 ISLVRSVMRSERVKFRGLMTIG---DGTKDSFHRLNGVKKRLEEEFGELGEFVMSMGMSS 193
Query: 196 DFELAIASGATSVRIGSGIFGE 217
D++LAI G+ +RIG+ IF
Sbjct: 194 DYKLAIQMGSNHIRIGTLIFNS 215
>gi|289640980|ref|ZP_06473150.1| alanine racemase domain protein [Frankia symbiont of Datisca
glomerata]
gi|289509295|gb|EFD30224.1| alanine racemase domain protein [Frankia symbiont of Datisca
glomerata]
Length = 321
Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats.
Identities = 56/253 (22%), Positives = 91/253 (35%), Gaps = 60/253 (23%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQ---------- 75
D ++L+AVSK + + + G FAEN+ QEA+ K + K
Sbjct: 65 DELTLIAVSKNWPASDVVLLAGSGVTHFAENREQEARAKVAAVTKYLVAHESCRELDSEV 124
Query: 76 ------------------------------------------LRFIGSLQSNKVSEIVSL 93
F+G LQ NK +
Sbjct: 125 SSAWRPSAPQTAPEGDDGQPPRPDPAAAPAAGPGASFGSWPCWHFVGQLQRNKARPVARW 184
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY---EIQKSGIMPNQTKDFVILCR 150
+++V R + L+ + R + V +QV+ + + G P L
Sbjct: 185 AGWVQSVDRAPLVNALAAGALAHDREIVVCLQVSLDPPGCDTGRGGARPADVLALGDLVA 244
Query: 151 QKYQLNVEGLMCIPPAMGNPKPHFYLLSEI-----ARECKLTKLSMGMTRDFELAIASGA 205
L + G+M + P +P F L E+ + + +S GM+ DF A+A GA
Sbjct: 245 ASRGLVLAGVMGVAPRGLPARPAFARLREVSWMLRREHPEASVISAGMSADFPDAVAEGA 304
Query: 206 TSVRIGSGIFGER 218
T +RIG+ +FG R
Sbjct: 305 THLRIGTALFGPR 317
>gi|315638347|ref|ZP_07893526.1| proline synthetase associated protein [Campylobacter upsaliensis
JV21]
gi|315481558|gb|EFU72183.1| proline synthetase associated protein [Campylobacter upsaliensis
JV21]
Length = 209
Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats.
Identities = 55/198 (27%), Positives = 103/198 (52%), Gaps = 12/198 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE-WDVQLRFIGSLQSN 85
+V LVA SK V++ I+ G F EN+++ +K L+ E ++ FIG+LQSN
Sbjct: 12 NVRLVAASKYVNANTIKEFYHKGISEFGENQVKALSEKKELLKDENLTIKWHFIGTLQSN 71
Query: 86 KVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-K 143
K++ ++ ++ ++ + K A + + + L +++N+ +E KSGI N+ +
Sbjct: 72 KINLLIKQRPILWQSCNSLKLAKAVDKRL---NYTLDTLLEINSAFEENKSGIELNKAFE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR------ECKLTKLSMGMTRDF 197
+++ + + LN++G+MCI + K + R + SMGM+ DF
Sbjct: 129 EYLQIQEECKNLNLKGVMCIGTHSDDVKKIQKSFEDTYRIYEKLQKHGANICSMGMSNDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
ELA+ G+ +R+GS +F
Sbjct: 189 ELALKCGSNMLRLGSILF 206
>gi|227495281|ref|ZP_03925597.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
gi|226831151|gb|EEH63534.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
Length = 276
Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats.
Identities = 72/233 (30%), Positives = 105/233 (45%), Gaps = 18/233 (7%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR---VALSC-GQVIF-AENK 57
+ + KI+ A + R + L K + + +AL G+ A N+
Sbjct: 44 IYQNVSEVLDKIQACAEMNHRHAAEIELEIAIKTRSATEALHAGLALEASGRRALLAHNR 103
Query: 58 LQEAKKKWIPLRKEWDVQLR--FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
+QEA+ LR IG+LQ NK++ V +FD IE+V A LS + +
Sbjct: 104 VQEAQATTPILRDGPLSSFHSVLIGNLQRNKINAAVRVFDEIESVDSLALARALS-QRLD 162
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---P 172
+ LP+ +QVNT E+ KSG++P + + L V G M I +
Sbjct: 163 PTEQLPIMLQVNTSRELSKSGLVPEVALETALEIADLPGLLVTGFMTIGAHTTDQALIGK 222
Query: 173 HFYLLSEIAREC-------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F L I E K LSMGM+ DFELAIA G+T +RIG+ +FG R
Sbjct: 223 SFANLRAIRDEAIKHPSLKKAINLSMGMSSDFELAIAEGSTRIRIGNAVFGPR 275
>gi|222823754|ref|YP_002575328.1| hypothetical protein Cla_0749 [Campylobacter lari RM2100]
gi|222538976|gb|ACM64077.1| conserved hypothetical protein [Campylobacter lari RM2100]
Length = 205
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 10/197 (5%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
K +V L+A SK V ++IR G F EN++Q K L+ +++ FIG+LQS
Sbjct: 12 KQNVRLIAASKYVQDEQIRELFKQGIFEFGENQVQALALKKEKLQD-LEIKWHFIGNLQS 70
Query: 85 NKVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QT 142
NK++ ++ V+ ++ + K A + + L +++NT E KSGI N
Sbjct: 71 NKINLLIKQKPVLWQSCNGIKIAKAVDKRLE---YKLDTLLEINTANENSKSGIEQNKAI 127
Query: 143 KDFVILCRQKYQLNVEGLMCI-PPAMGNPKPHFYLLSEIARECK---LTKLSMGMTRDFE 198
++++ + + LN+ G+MCI + F +I + SMGM+ DFE
Sbjct: 128 EEYLQIQEECENLNLVGIMCIGAMNEEKVQEGFEQTFKIYENLQKHGAKICSMGMSGDFE 187
Query: 199 LAIASGATSVRIGSGIF 215
LAI G+ VR+GS +F
Sbjct: 188 LAIKCGSNMVRLGSILF 204
>gi|57241930|ref|ZP_00369870.1| conserved hypothetical protein TIGR00044 [Campylobacter upsaliensis
RM3195]
gi|57017122|gb|EAL53903.1| conserved hypothetical protein TIGR00044 [Campylobacter upsaliensis
RM3195]
Length = 209
Score = 175 bits (446), Expect = 3e-42, Method: Composition-based stats.
Identities = 56/198 (28%), Positives = 102/198 (51%), Gaps = 12/198 (6%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE-WDVQLRFIGSLQSN 85
+V LVA SK VD+ I+ G F EN+++ +K L+ E ++ FIG+LQSN
Sbjct: 12 NVHLVAASKYVDANTIKEFYHKGISEFGENQVKALSEKKELLKDENLTIKWHFIGTLQSN 71
Query: 86 KVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-K 143
K++ ++ ++ ++ + K A + + + L +++N+ E KSGI N+ +
Sbjct: 72 KINLLIKQRPILWQSCNSLKLAKAVDKRL---NYILDTLLEINSASEENKSGIELNKAFE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR------ECKLTKLSMGMTRDF 197
+++ + + LN++G+MCI + K + R + SMGM+ DF
Sbjct: 129 EYLQIQEECKNLNLKGVMCIGTHSNDVKKIQKSFEDTYRIYEKLQKHGANICSMGMSSDF 188
Query: 198 ELAIASGATSVRIGSGIF 215
ELA+ G+ +R+GS +F
Sbjct: 189 ELALKCGSNMLRLGSILF 206
>gi|237841025|ref|XP_002369810.1| proline synthetase co-transcribed protein, putative [Toxoplasma
gondii ME49]
gi|211967474|gb|EEB02670.1| proline synthetase co-transcribed protein, putative [Toxoplasma
gondii ME49]
Length = 350
Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats.
Identities = 69/289 (23%), Positives = 99/289 (34%), Gaps = 85/289 (29%)
Query: 17 SAILAKRPKDS-VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQ 75
S A R + V L+AVSK + + A GQ F EN +QE +K L D++
Sbjct: 58 SCEGALRETEGCVRLLAVSKYQPASAVAAAALAGQRHFGENYVQELVEKATQLC-HLDLK 116
Query: 76 LRFIGSLQSNKVSEIV---SLFDVIETVSREKTASLLSLEMI-----KQSRFLPVYIQVN 127
IG LQSNK +++ +ETV +K A L+ + + L V +QVN
Sbjct: 117 WHMIGHLQSNKAKQLLMGCPQLYAVETVDSKKLAKTLNDAVATVLSQRNGAPLRVLVQVN 176
Query: 128 TGYEIQKSGIMP----------------NQTKDFVI-LCRQKYQLNVEGLMCIP-PAMGN 169
E KSG+ ++ ++ V + L GLM I P
Sbjct: 177 ASDEASKSGVRLHSVDGNRGETETPCGDSEVRELVEYIVDSCPHLRFSGLMTIGHPDPER 236
Query: 170 PKPHFYLLSEI-----------------------------------------------AR 182
F ++ + A
Sbjct: 237 TSGTFAKMATLRLDLLKLPHVRQVFMSRTESAGEREAYDRSERKSSNTSEAARNTRNKAE 296
Query: 183 ECKLTKLSMGMTRDFEL----------AIASGATSVRIGSGIFGERPCQ 221
E + + FEL AI G+T VRIG+ IFG RP Q
Sbjct: 297 EARPLHAAFDRDDLFELSMGMSGDMAEAIIHGSTEVRIGTAIFGSRPLQ 345
>gi|167740075|ref|ZP_02412849.1| hypothetical protein Bpse14_18583 [Burkholderia pseudomallei 14]
Length = 152
Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats.
Identities = 52/152 (34%), Positives = 73/152 (48%), Gaps = 2/152 (1%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 61 ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
L V +QVN E KSG+ P
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADAAGLARAVA 152
>gi|167721105|ref|ZP_02404341.1| hypothetical protein BpseD_19001 [Burkholderia pseudomallei DM98]
Length = 151
Score = 174 bits (443), Expect = 6e-42, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 73/151 (48%), Gaps = 2/151 (1%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 61 ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
L V +QVN E KSG+ P
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADAAGLARAV 151
>gi|167847186|ref|ZP_02472694.1| hypothetical protein BpseB_18067 [Burkholderia pseudomallei B7210]
Length = 158
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 53/158 (33%), Positives = 74/158 (46%), Gaps = 2/158 (1%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 61 ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156
L V +QVN E KSG+ P L
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADAAGLARAVAALPALR 158
>gi|171914425|ref|ZP_02929895.1| predicted enzyme [Verrucomicrobium spinosum DSM 4136]
Length = 164
Score = 173 bits (440), Expect = 1e-41, Method: Composition-based stats.
Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K L DV+ IG LQSNKV +++ + + I +V A + + +Y
Sbjct: 3 KVPLLP--PDVRWHLIGHLQSNKVRKVLPVVEAIHSVDSLDLARNIHRIAGELGVVSQIY 60
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLSEI 180
++VN E K G P + + +LN+ GLM +PP + + +F L E+
Sbjct: 61 LEVNVSGEASKYGFEPAGLEAELEELLALDRLNLVGLMTVPPIGESGEESRRYFAELREL 120
Query: 181 AREC------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
+L LSMGM+ D+E A+ GAT VR+GS IFG R
Sbjct: 121 RDRLETRSGKRLPGLSMGMSGDYETAVEEGATIVRVGSAIFGGR 164
>gi|84994852|ref|XP_952148.1| proline synthetase associated protein [Theileria annulata strain
Ankara]
gi|65302309|emb|CAI74416.1| proline synthetase associated protein, putative [Theileria
annulata]
Length = 205
Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 67/228 (29%), Positives = 102/228 (44%), Gaps = 37/228 (16%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS K + +IEN V L+ V+K + I GQ+ F EN++QE
Sbjct: 1 MSYIEKWLELRNEIENF---------GVELLVVTKNCEKTLINELYKLGQINFGENRVQE 51
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIKQSR 118
+K L + ++ FIG LQSNK ++ V +I+++ + +LL L+ K +R
Sbjct: 52 LYEKSREL--DSTIKWHFIGHLQSNKCGKLLEVPNLYMIQSLDSLELCNLLILKTEKLNR 109
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
+ V IQVNT + + V + +L GLM I F L+
Sbjct: 110 EINVLIQVNTTLKTTQY----------VTRILESQRLKFCGLMTIGDGGI---ECFQRLN 156
Query: 179 -------EIARECK----LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
E +CK +SMGM+ D++LAI G+ +RIGS IF
Sbjct: 157 MIKNVLMEQFIQCKGLGDEFIMSMGMSNDYKLAIQMGSNHIRIGSLIF 204
>gi|187251199|ref|YP_001875681.1| alanine racemase domain-containing protein [Elusimicrobium minutum
Pei191]
gi|186971359|gb|ACC98344.1| Alanine racemase domain protein [Elusimicrobium minutum Pei191]
Length = 229
Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats.
Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 13/226 (5%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS-CGQVIFAENKLQE 60
++ K +I NSA + R + + V K + L G AE+KLQ+
Sbjct: 6 NVIEKYNKVITRIRNSAEVRNRNFKRIKPILVIKYAKDLDVLELLGFLGAASAAESKLQD 65
Query: 61 AKKKWI-----PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
A+K+W LR + + FIG+LQ NK+++IV+LFD I++V + A ++ + +
Sbjct: 66 AQKRWNKDEFKALRNKTAL--HFIGALQKNKIAKIVNLFDYIDSVDTIEHAEFINAKAKE 123
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
Q + + +Q+ +SG P V + +N++G M I P + N + +
Sbjct: 124 QGKKVNCLLQIKLTKSATQSGANPQDVHTLVEHIKTLEHINLKGFMAIAPQVENIEDLRH 183
Query: 176 LLSEIA----RECKLT-KLSMGMTRDFELAIASGATSVRIGSGIFG 216
L EI +E +LS+GM+ DFE A+ G+T RIGS IFG
Sbjct: 184 LFKEIKILNDKELGPEAELSLGMSNDFETAVEEGSTMPRIGSAIFG 229
>gi|167825700|ref|ZP_02457171.1| hypothetical protein Bpseu9_18657 [Burkholderia pseudomallei 9]
Length = 155
Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 73/155 (47%), Gaps = 2/155 (1%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHRRIDEAARAAGRAPGSVTLLAVSKTFPADAVRAAYAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 61 ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY 153
L V +QVN E KSG+ P
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADAAGLARAVAALP 155
>gi|167895771|ref|ZP_02483173.1| hypothetical protein Bpse7_18666 [Burkholderia pseudomallei 7894]
Length = 151
Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 73/151 (48%), Gaps = 2/151 (1%)
Query: 1 MS-LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQ 59
MS L +L ++I+ +A A R SV+L+AVSK + +R A + GQ F EN +Q
Sbjct: 1 MSDLAARLASVHRRIDEAARAAGRAPGSVALLAVSKTFPADAVRAAYAAGQRAFGENYVQ 60
Query: 60 EAKKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E+ K L +++ FIG LQSNK + FD + T+ R K A LS +
Sbjct: 61 ESIDKISTLADLRAELEWHFIGPLQSNKTRPVAERFDWVHTIDRLKIAQRLSEQRPAHLP 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
L V +QVN E KSG+ P
Sbjct: 121 PLNVCVQVNISGEASKSGVAPADAAGLARAV 151
>gi|27262184|gb|AAN87373.1| hypothetical cytosolic protein [Heliobacillus mobilis]
Length = 182
Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 11/150 (7%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G+LQ+NKV I ++I ++ R A + R + ++VN E K G+
Sbjct: 32 GTLQTNKVKYIYDKVELIHSLDRLSLAEAIHKHAGLLQRPIDCLVEVNVSGEESKHGVPK 91
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR-----------ECKLTK 188
+ F+ +++ GLM + P + N + ++ E+ + ++
Sbjct: 92 QELVPFLRSLSSLDGVHIRGLMTMAPFVDNSEEIRWVFRELRQLSLEVRELNLARVEMQH 151
Query: 189 LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGMT D+E+A+ GAT VR+GSG+FGER
Sbjct: 152 LSMGMTNDYEVAVEEGATIVRVGSGLFGER 181
>gi|221117858|ref|XP_002154810.1| PREDICTED: similar to proline synthetase co-transcribed
bacterial-like protein [Hydra magnipapillata]
Length = 174
Score = 170 bits (433), Expect = 9e-41, Method: Composition-based stats.
Identities = 60/172 (34%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIKQ--SRF 119
K D++ FIGSLQ NKV+ + V + TV K A L K+
Sbjct: 3 KLHQNLGYNDIRWHFIGSLQRNKVNNLLDVENLFAVHTVGSIKLADALDKSWAKKNTGTQ 62
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAMGN----PKPHF 174
L V+IQVNT E K G PN+ L++ GLM I + P P F
Sbjct: 63 LNVFIQVNTSAEENKGGCEPNECVSLAKHILNSCKSLSLYGLMTIGLFDYDYSQGPNPDF 122
Query: 175 YLLSEIARE----CKLTK----LSMGMTRDFELAIASGATSVRIGSGIFGER 218
LS+ ++ C + + LSMGM+ D++ AI++G+T VRIGS IFG R
Sbjct: 123 LCLSKCRQDVCTSCGIEENNLMLSMGMSNDYQEAISAGSTHVRIGSLIFGAR 174
>gi|218513523|ref|ZP_03510363.1| hypothetical protein Retl8_07286 [Rhizobium etli 8C-3]
Length = 131
Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats.
Identities = 78/131 (59%), Positives = 97/131 (74%)
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
++ V+LFDVIETV REK A L+ EM +Q R +Y+QVNTG E QK+GI P+ T FV
Sbjct: 1 ADAVALFDVIETVDREKIARALAEEMKRQDRTPRLYVQVNTGLEPQKAGIAPDDTPAFVT 60
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATS 207
LCR + L +EGLMCIPPA NP PHF LL+++A +C + KLSMGM+ D+E AIA GATS
Sbjct: 61 LCRDELGLAIEGLMCIPPAEENPGPHFALLAKLASKCGVEKLSMGMSGDYETAIAFGATS 120
Query: 208 VRIGSGIFGER 218
VR+GS IFG R
Sbjct: 121 VRVGSAIFGAR 131
>gi|167537654|ref|XP_001750495.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771035|gb|EDQ84709.1| predicted protein [Monosiga brevicollis MX1]
Length = 208
Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats.
Identities = 57/162 (35%), Positives = 83/162 (51%), Gaps = 16/162 (9%)
Query: 73 DVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
D++ FIG LQ NKV ++ ++ ++ETVS +K A L+ +Q R + V IQVNT
Sbjct: 42 DIEWHFIGHLQRNKVKQLAAVQGLAMVETVSSQKLADALNKTFAEQERTVSVLIQVNTSR 101
Query: 131 EIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMCIPPAM-----GNPKPHFYLL------- 177
E K G++ ++ L + GLM I P F L
Sbjct: 102 EENKHGVLEDEVVAVAKHITASCPALRLCGLMTIGNLEQSLAPEETNPDFETLVRCRAAV 161
Query: 178 -SEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
SE+ R+ + +LSMGM+ D+E AI G+T+VR+GS IFG R
Sbjct: 162 ASELGRDAEELELSMGMSSDYETAIRQGSTNVRVGSTIFGAR 203
>gi|213028404|ref|ZP_03342851.1| hypothetical protein Salmonelentericaenterica_41345 [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 119
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
+K K + FIG LQSNK + FD T+ R + AS LS +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQR 116
>gi|293189598|ref|ZP_06608317.1| alanine racemase domain protein [Actinomyces odontolyticus F0309]
gi|292821498|gb|EFF80438.1| alanine racemase domain protein [Actinomyces odontolyticus F0309]
Length = 187
Score = 165 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 15/188 (7%)
Query: 43 RVALSCGQ-VIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVS 101
G ++ N++QEA+ +R+ ++ IG LQSNK++ ++ D IE++
Sbjct: 1 AALREAGLPILLGHNRVQEARATAEAIREVPGARIHLIGPLQSNKINHALACVDAIESLD 60
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161
AS + + + LPV+++VN E K G P V + L + G M
Sbjct: 61 SPALASKID---ARTTGTLPVFVEVNVSGEATKHGCAPADVSALVDVVGASAHLQLAGFM 117
Query: 162 CIP---PAMGNPKPHFYLLSEIARE----CKLTK----LSMGMTRDFELAIASGATSVRI 210
+ P + + + L I E + + LSMGM+RD E AIA GAT VR+
Sbjct: 118 TVGLNSPVEADVRAAYAQLRGIRDEAAAHLGINESDLALSMGMSRDLEWAIAEGATIVRL 177
Query: 211 GSGIFGER 218
G+ IFG R
Sbjct: 178 GTAIFGAR 185
>gi|156097392|ref|XP_001614729.1| hypothetical protein [Plasmodium vivax SaI-1]
gi|148803603|gb|EDL45002.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 242
Score = 165 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 67/248 (27%), Positives = 113/248 (45%), Gaps = 38/248 (15%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKI--RVALSCGQVIFAENKL 58
M N L+ + KI++ + L+A SK V S++I + F EN L
Sbjct: 1 MKYINNLKEIENKIKSICDSCGAAPPKI-LIA-SKYVGSEEINNIHVYDK-KYHFGENSL 57
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLS------ 110
+ ++K L ++ FIG+LQS K + +L ++E++ ++K A+LL+
Sbjct: 58 EALEEKARQLPDT--IKWHFIGNLQSKKCKVLANLKNLHMVESLDKQKKATLLNNYLKSI 115
Query: 111 ----LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF----VILCRQKYQLNVEGLMC 162
Q + + V +Q+ T ++ K+GI +Q D + + L +GLM
Sbjct: 116 NENEQRSSDQVKKIRVLMQIKTTDDLNKTGIAHSQYDDIESTILYIINNCEFLIFKGLMT 175
Query: 163 IPPAMGNPKPH-FYLLSEI-------------ARECKLTKLSMGMTRDFELAIASGATSV 208
I + + + F +L++I R+ K +SMGM+ D ELAI T +
Sbjct: 176 ISSLEPSSRENSFVILNDIKSRLLSNTAIRDYFRDRKF-HMSMGMSGDLELAIKHRTTQL 234
Query: 209 RIGSGIFG 216
RIGS IFG
Sbjct: 235 RIGSAIFG 242
>gi|237756655|ref|ZP_04585165.1| hypothetical protein SULYE_1217 [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237691187|gb|EEP60285.1| hypothetical protein SULYE_1217 [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 126
Score = 165 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 62/126 (49%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ + +++I+ + + ++ V L+A SK +KI A G F ENK+QE
Sbjct: 1 MSIKENVLKIEERIQKACDKVGKKREEVILLAASKTQPVEKIIEAYESGIRYFGENKVQE 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+K L+K D+ IG LQ+NKV V ++ I +V R+ + K ++ +
Sbjct: 61 GIEKIEKLKKYSDIHWHLIGGLQTNKVKYAVKYYESIHSVDRQALVDEIEKRGEKLNKVI 120
Query: 121 PVYIQV 126
I+V
Sbjct: 121 DGLIEV 126
>gi|124506942|ref|XP_001352068.1| Pyridoxal 5'-phosphate dependent enzyme class III, putative
[Plasmodium falciparum 3D7]
gi|23505097|emb|CAD51879.1| Pyridoxal 5'-phosphate dependent enzyme class III, putative
[Plasmodium falciparum 3D7]
Length = 242
Score = 165 bits (418), Expect = 5e-39, Method: Composition-based stats.
Identities = 68/244 (27%), Positives = 111/244 (45%), Gaps = 33/244 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC-GQVIFAENKLQ 59
M N L+ +QK++ +S ++ V+K V ++I S + F EN +
Sbjct: 2 MKYINNLKEIEQKVKRICD--HFSVNSPDILIVTKYVGKEEIHNIHSLDNKYHFGENSVD 59
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMI--- 114
+K L K +++ FIG+LQSNK I V +IET+ +EK A+LL+ +
Sbjct: 60 SLIEKSEQLAK--NIKWHFIGNLQSNKCKNILKVKNLYMIETLDKEKKATLLNNYLKIEN 117
Query: 115 ------KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF----VILCRQKYQLNVEGLMCIP 164
++ R L V +Q+ T + K+G+ + + + L +GLM I
Sbjct: 118 ELNNNNEELRKLCVLMQIKTTDDETKTGLTHQNYDEIENTVLHIINNCQFLIFKGLMTIS 177
Query: 165 PAMGNPKPH-FYLLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRIG 211
N + + F +L++I R+ K +SMGM+ D ELAI T +RIG
Sbjct: 178 SLDINKRENSFVILNDIKRKLLSNQVINNYFLNKTFHMSMGMSDDMELAIKHETTQLRIG 237
Query: 212 SGIF 215
IF
Sbjct: 238 RAIF 241
>gi|221054658|ref|XP_002258468.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|193808537|emb|CAQ39240.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 242
Score = 164 bits (417), Expect = 6e-39, Method: Composition-based stats.
Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 36/247 (14%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQV-IFAENKLQ 59
M N L+ + KI++ ++ V+K V S++I + + F EN L+
Sbjct: 1 MKYINNLKEIENKIKSICDNCGVVP--PKILIVTKYVGSEEINNIHAYDKKYHFGENSLE 58
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL--FDVIETVSREKTASLLS------- 110
++K L ++ FIG+LQS K + +L ++ET+ ++K A +L+
Sbjct: 59 ALEEKAKKLPDT--IKWHFIGNLQSKKCKVLANLKNLHMVETLDKQKKAIMLNNYLKSIN 116
Query: 111 ---LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF----VILCRQKYQLNVEGLMCI 163
Q++ + V +Q+ T + K+GI N D + + L +GLM I
Sbjct: 117 ETEQRSSNQAKKIRVLMQIKTTDDPNKTGIGHNNYDDIESTILYIINNCEFLIFKGLMTI 176
Query: 164 PPAM-GNPKPHFYLLSEI-------------ARECKLTKLSMGMTRDFELAIASGATSVR 209
N + F +L++I R+ K +SMGM+ D ELAI T +R
Sbjct: 177 SSLEIANRENSFVILNDIKSRLLSNAVIRDYFRDRKF-HMSMGMSGDLELAIKHRTTQLR 235
Query: 210 IGSGIFG 216
IGS IFG
Sbjct: 236 IGSAIFG 242
>gi|283470399|emb|CAQ49610.1| protein YlmE [Staphylococcus aureus subsp. aureus ST398]
Length = 168
Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 16/166 (9%)
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L D + FIGSLQS KV ++++ D + R A ++ +
Sbjct: 6 QKKEALPS--DAVIHFIGSLQSRKVKDVINDVDYFHALDRLSLAKEINKRAE---HKIKC 60
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
++QVN E K GI F+ ++ ++ + GLM + P + + F L
Sbjct: 61 FLQVNVSGEASKHGIALEDVDQFIDDLKKYDKIEIVGLMTMAPLTDDEAYIRSLFKQLRL 120
Query: 180 IARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
E + +LSMGM+ D+ +A+ GAT VRIG+ + GE
Sbjct: 121 KKEEIQRLNLEYAPCDELSMGMSNDYLIAVEEGATFVRIGTKLVGE 166
>gi|261884824|ref|ZP_06008863.1| hypothetical protein CfetvA_06189 [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 199
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 23/212 (10%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
+L KI S L+AVSK V ++ + GQ+ F EN++QE K+K
Sbjct: 2 RLDEILSKI-----------GSTKLIAVSKNVTENEVLELYNQGQIDFGENRVQELKRKK 50
Query: 66 IPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIKQSRFLPVYI 124
L K+ ++ FIG LQ+NK++ +++L ++ ++ A + + LP +
Sbjct: 51 EIL-KDLNLNWHFIGRLQANKINHLLALHPNLWQSCESFSMAEAVDKRL---DYILPTLL 106
Query: 125 QVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---HFYLLSEI 180
Q+N+ +E K G+ PN ++F+ + + LN+ G+M I + K F +I
Sbjct: 107 QINSAHEESKQGVDPNAACEEFLRIKQSCKNLNLIGVMSIGAHSDDIKEIQKSFESTYKI 166
Query: 181 A---RECKLTKLSMGMTRDFELAIASGATSVR 209
+E SMGM+ D+E S R
Sbjct: 167 YENLQEHGAKICSMGMSSDYERPAGSRRHQAR 198
>gi|297571031|ref|YP_003696805.1| alanine racemase [Arcanobacterium haemolyticum DSM 20595]
gi|296931378|gb|ADH92186.1| alanine racemase domain protein [Arcanobacterium haemolyticum DSM
20595]
Length = 230
Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats.
Identities = 54/233 (23%), Positives = 99/233 (42%), Gaps = 21/233 (9%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L + ++ A R V ++ +K +++ A G V+ N + +
Sbjct: 3 AIAESLGRIRDIVDRYA--GGRH---VDIMLATKHQPIERLIEAYDAGGVLMGHNLVDQL 57
Query: 62 KKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE------MI 114
L + IG +QSNK+S +++ D I+TV KTA ++
Sbjct: 58 VSANAGLAEHGIHPYTSMIGHVQSNKLSSAMTVADRIDTVDSLKTAQRINRRQEERVARG 117
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP--AMGNPKP 172
+ + PV IQ+N+ + G+ + ++ + G+M I + N +
Sbjct: 118 EATGPYPVLIQINSAAADTQFGVAIGDVMQLAVAIADLPRVQIRGVMTIGARGSETNIRA 177
Query: 173 HFYLLSEIARECK-------LTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
F ++ E + +SMGM+ D LAI+ GAT VR+G+ +FGER
Sbjct: 178 SFATTRRLSEEMRTLPALADADVISMGMSNDMHLAISEGATVVRVGTAVFGER 230
>gi|68065758|ref|XP_674863.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56493711|emb|CAH99590.1| conserved protein, putative [Plasmodium berghei]
Length = 242
Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats.
Identities = 67/246 (27%), Positives = 107/246 (43%), Gaps = 34/246 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC-GQVIFAENKLQ 59
M N ++ + KIE R ++ VSK V ++I S + F EN
Sbjct: 1 MKHINNIKNIENKIEKICQDTCRIP--PKILIVSKYVGHEEINNIHSYEKKYHFGENNFD 58
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLS------- 110
+K L ++ FIG++QSNK I V +IE++ ++K ASLL+
Sbjct: 59 SLIEKSQKLPNT--IKWHFIGNIQSNKCKNILKVPNLYMIESLDKQKKASLLNSYLNTIN 116
Query: 111 ---LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF----VILCRQKYQLNVEGLMCI 163
+ L V +Q+ T + K+G+M + +D + + L +GLM I
Sbjct: 117 ENEENNNDNLKKLRVLVQIKTTDDPNKTGMMHDNYEDIENTVLYIINNCNLLIFKGLMTI 176
Query: 164 PPAMGNPKPH-FYLLSEIAREC------------KLTKLSMGMTRDFELAIASGATSVRI 210
N + + F +L++I + K +SMGM+ D ELAI + T +RI
Sbjct: 177 SSLDINNRENSFIILNDIKNKLLNNQTISNYFQNKKFHMSMGMSDDLELAIKNNTTQLRI 236
Query: 211 GSGIFG 216
G IFG
Sbjct: 237 GRAIFG 242
>gi|213417290|ref|ZP_03350434.1| hypothetical protein Salmonentericaenterica_04992 [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 108
Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 2/106 (1%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+ + L + KI +A R + V+L+AVSK + I A++ GQ F EN +QE
Sbjct: 3 DIAHNLAHIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIAEAIAAGQRAFGENYVQEG 62
Query: 62 KKKWIPL--RKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKT 105
+K K + FIG LQSNK + FD T+ R +
Sbjct: 63 VEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRI 108
>gi|226328802|ref|ZP_03804320.1| hypothetical protein PROPEN_02702 [Proteus penneri ATCC 35198]
gi|225201988|gb|EEG84342.1| hypothetical protein PROPEN_02702 [Proteus penneri ATCC 35198]
Length = 111
Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 48/103 (46%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ L + I+ A R + ++L+AVSK + I A++CGQ F EN +QE
Sbjct: 3 TIKQNLVNVRSHIDTVAQKCGRSSEEITLLAVSKTKPASDIEKAIACGQTEFGENYVQEG 62
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK 104
K + FIG LQSNK + FD T+ R K
Sbjct: 63 VDKIHYFADNHTLVWHFIGPLQSNKTRLVAENFDWCHTIDRLK 105
>gi|221483679|gb|EEE21991.1| proline synthetase associated protein, putative [Toxoplasma gondii
GT1]
Length = 349
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 50/195 (25%), Positives = 77/195 (39%), Gaps = 28/195 (14%)
Query: 17 SAILAKRPKDS-VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQ 75
S A R + V L+AVSK + + A GQ F EN +QE +K L D++
Sbjct: 57 SCEGALRETEGCVRLLAVSKYQPASAVAAAALAGQRHFGENYVQELVEKATQLC-HLDLK 115
Query: 76 LRFIGSLQSNKVSEIV---SLFDVIETVSREKTASLLSLEMI-----KQSRFLPVYIQVN 127
IG LQSNK +++ +ETV +K A L+ + + L V +QVN
Sbjct: 116 WHMIGHLQSNKAKQLLMGCPQLYAVETVDSKKLAKTLNDAVATVLSQRNGAPLRVLVQVN 175
Query: 128 TGYEIQKSGIMP----------------NQTKDFVI-LCRQKYQLNVEGLMCIP-PAMGN 169
E KSG+ ++ ++ V + L GLM I P
Sbjct: 176 ASDEASKSGVRLHSVDGNRGETETPCGDSEVRELVEYIVDSCPHLRFSGLMTIGHPDPER 235
Query: 170 PKPHFYLLSEIAREC 184
F ++ + +
Sbjct: 236 TSGTFAKMATLRLDL 250
Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 164 PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
N L L +LSMGM+ D AI G+T VRIG+ IFG RP Q
Sbjct: 287 ARNTRNKAEEARPLHAAFDRDDLFELSMGMSGDMAEAIIHGSTEVRIGTAIFGSRPLQ 344
>gi|221504298|gb|EEE29973.1| proline synthetase associated protein, putative [Toxoplasma gondii
VEG]
Length = 350
Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 50/195 (25%), Positives = 77/195 (39%), Gaps = 28/195 (14%)
Query: 17 SAILAKRPKDS-VSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQ 75
S A R + V L+AVSK + + A GQ F EN +QE +K L D++
Sbjct: 58 SCEGALRETEGCVRLLAVSKYQPASAVAAAALAGQRHFGENYVQELVEKATQLC-HLDLK 116
Query: 76 LRFIGSLQSNKVSEIV---SLFDVIETVSREKTASLLSLEMI-----KQSRFLPVYIQVN 127
IG LQSNK +++ +ETV +K A L+ + + L V +QVN
Sbjct: 117 WHMIGHLQSNKAKQLLMGCPQLYAVETVDSKKLAKTLNDAVAAVLSQRNGAPLRVLVQVN 176
Query: 128 TGYEIQKSGIMP----------------NQTKDFVI-LCRQKYQLNVEGLMCIP-PAMGN 169
E KSG+ ++ ++ V + L GLM I P
Sbjct: 177 ASDEASKSGVRLHSVDGNRGETETPCGDSEVRELVEYIVDSCPHLRFSGLMTIGHPDPER 236
Query: 170 PKPHFYLLSEIAREC 184
F ++ + +
Sbjct: 237 TSGTFAKMATLRLDL 251
Score = 72.4 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 27/58 (46%)
Query: 164 PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
N L L +LSMGM+ D AI G+T VRIG+ IFG RP Q
Sbjct: 288 ARNTRNKAEEARPLHAAFDRDDLFELSMGMSGDMAEAIIHGSTEVRIGTAIFGSRPLQ 345
>gi|84872182|ref|NP_001034166.1| proline synthase co-transcribed bacterial homolog protein isoform b
[Mus musculus]
gi|38174599|gb|AAH61045.1| Proline synthetase co-transcribed [Mus musculus]
gi|74188637|dbj|BAE28062.1| unnamed protein product [Mus musculus]
Length = 153
Score = 155 bits (394), Expect = 3e-36, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ S +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 11 LGVGFALRAVNERVQQS--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 68
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSL 111
+QE +K L +++ FIG LQ V+++ V ++ETV K A ++
Sbjct: 69 YVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETVDSVKLADKVNS 128
Query: 112 EMIKQSR--FLPVYIQVNTGYEIQK 134
K+ L V +Q+NT E K
Sbjct: 129 SWQKKGPTEPLKVMVQINTSGEDSK 153
>gi|229157479|ref|ZP_04285556.1| hypothetical protein bcere0010_36610 [Bacillus cereus ATCC 4342]
gi|228625929|gb|EEK82679.1| hypothetical protein bcere0010_36610 [Bacillus cereus ATCC 4342]
Length = 153
Score = 155 bits (393), Expect = 4e-36, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 14/155 (9%)
Query: 74 VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ 133
+ FIGSLQ+ KV EI++ D + ++ R A + K+ + +IQV T E
Sbjct: 1 MNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRADKK---VKCFIQVKTSSEES 57
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA------RECKL- 186
K G+ +T F+ ++ ++ V GLM + P + E+ +E +L
Sbjct: 58 KQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQAEVQELELL 117
Query: 187 ----TKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 118 HAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 152
>gi|266625686|ref|ZP_06118621.1| YlmE protein [Clostridium hathewayi DSM 13479]
gi|288862406|gb|EFC94704.1| YlmE protein [Clostridium hathewayi DSM 13479]
Length = 103
Score = 154 bits (391), Expect = 6e-36, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L+ ++I + A R ++ V+L+AVSK + A G F ENK+QE
Sbjct: 2 VKENLEEVNRRISEACRRAGRNREDVTLIAVSKTKPVSMLEEAYETGIRDFGENKVQELC 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTA 106
+K L+ D++ IG LQ NKV +++ +I +V + A
Sbjct: 62 EKHEVLQS--DIRWHMIGHLQRNKVRQVIDKTVLIHSVDSVRLA 103
>gi|228987045|ref|ZP_04147170.1| hypothetical protein bthur0001_37190 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228772639|gb|EEM21080.1| hypothetical protein bthur0001_37190 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 153
Score = 154 bits (391), Expect = 6e-36, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 14/155 (9%)
Query: 74 VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ 133
+ FIGSLQ+ KV EI++ D + ++ R A + K+ + +IQV T E
Sbjct: 1 MNWHFIGSLQTRKVKEIINEIDYLHSLDRLSLAKEIQKRADKK---VKCFIQVKTSSEES 57
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK----- 185
K G+ +T F+ ++ ++ V GLM + P + F L + E +
Sbjct: 58 KQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEGEIRRCFKELRMLQAEVQELELL 117
Query: 186 ---LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 118 HAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 152
>gi|255522107|ref|ZP_05389344.1| hypothetical protein LmonocFSL_12975 [Listeria monocytogenes FSL
J1-175]
Length = 118
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 55/115 (47%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+ LQ +IE + + R + V+LVAV+K +D I G F EN+
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQPEDVTLVAVTKTIDVAGITELYDLGIRHFGENRADV 60
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
++K + L + D+ +IGSLQ+ KV +++ D + ++ R A + K
Sbjct: 61 FQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDRSSLAKEIEKRATK 115
>gi|258615779|ref|ZP_05713549.1| hypothetical protein EfaeD_08714 [Enterococcus faecium DO]
Length = 135
Score = 152 bits (385), Expect = 4e-35, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ + LQ KQ+I++S L R V+LVAV+K V+S + + G + AEN++ +
Sbjct: 2 IADNLQKIKQEIQDSCALVHRDPKEVTLVAVTKSVESAQAEELVRAGVMNCAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+K L +++ IG+LQ KV IV+ D + + A + + K+ L
Sbjct: 62 EKKQDLFDFPEIKWHLIGNLQRRKVKLIVNEIDYFHALDSLRLAEEIQKRLEKE---LSC 118
Query: 123 YIQVNTGYEIQKSGIMP 139
+I+VN E K GI P
Sbjct: 119 FIEVNVSGEESKHGISP 135
>gi|124515880|gb|EAY57389.1| conserved protein of unknown function [Leptospirillum rubarum]
Length = 230
Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats.
Identities = 44/220 (20%), Positives = 83/220 (37%), Gaps = 7/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ K+ I A + +V V+K + + G AEN+ +
Sbjct: 9 RDRFDRLKRDIAVKARSNGFS-HEIRIVGVTKGRSDEDALALFTAGVDHLAENRWEFLSG 67
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
+ FIG+LQ + + ++TV R +L+ + +
Sbjct: 68 RADLCLSGRSPLWHFIGALQRRSLRQNYRPVYSVDTVDRPSVLPVLARLAEQAKVRQNIL 127
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEI 180
++++ +SG+ + + C +L V+G + + P + + F +
Sbjct: 128 VELDLTGLPGRSGVREDNLDSLLKECSGWPELEVKGFLVMGPPPEDRAFSRQVFRRGRAL 187
Query: 181 AREC---KLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
LSMGM+ D+ A+A G+T VRIG FGE
Sbjct: 188 FERFFSGNDHVLSMGMSEDYSEAVAEGSTEVRIGRYFFGE 227
>gi|206602124|gb|EDZ38606.1| Conserved protein of unknown function [Leptospirillum sp. Group II
'5-way CG']
Length = 230
Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats.
Identities = 43/220 (19%), Positives = 84/220 (38%), Gaps = 7/220 (3%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ K++I A + +V V+K ++ G AEN+ +
Sbjct: 9 RDRFDRLKKEIALKARSNGYS-HEIRIVGVTKGRSDEEAMALFEAGVDHLAENRWEFLSG 67
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
+ + FIG+LQ + + ++TV R +L+ + +
Sbjct: 68 RVELFQSGRFPLWHFIGALQRRSLRQNYRPVFSVDTVDRPSVLPVLARLAEQGKTRQNIL 127
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEI 180
++++ +SG+ + + C + +L V G + + P + + F +
Sbjct: 128 VELDLTGLPGRSGVREERLDSLLEECTRWPELVVRGFLVMGPPPEDRTLSRQVFRRGRAL 187
Query: 181 AREC---KLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
LSMGM+ D+ A+A G+T VRIG F E
Sbjct: 188 FERFFSGNDHVLSMGMSEDYPEAVAEGSTEVRIGRYFFEE 227
>gi|84872187|ref|NP_001034167.1| proline synthase co-transcribed bacterial homolog protein isoform c
[Mus musculus]
gi|29126929|gb|AAH47992.1| Proline synthetase co-transcribed [Mus musculus]
Length = 141
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 19/142 (13%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ S +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 11 LGVGFALRAVNERVQQS--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 68
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMI 114
+ L +++ FIG LQ V+++ V ++ETV K A ++
Sbjct: 69 YI---------LSSCPEIKWHFIGHLQKQNVNKLMAVPNLSMLETVDSVKLADKVNSSWQ 119
Query: 115 KQSR--FLPVYIQVNTGYEIQK 134
K+ L V +Q+NT E K
Sbjct: 120 KKGPTEPLKVMVQINTSGEDSK 141
>gi|157136632|ref|XP_001663799.1| proline synthetase associated protein [Aedes aegypti]
gi|108880985|gb|EAT45210.1| proline synthetase associated protein [Aedes aegypti]
Length = 223
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 43/118 (36%), Positives = 60/118 (50%), Gaps = 11/118 (9%)
Query: 30 LVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIP---LRKEWDVQLRFIGSLQSNK 86
LVAVSK + I S GQ F EN +QE +K L D++ FIG LQ+NK
Sbjct: 40 LVAVSKTKPIELILDGYSIGQRDFGENYVQELIEKANDPRILEHCKDIRWHFIGHLQTNK 99
Query: 87 VSEIVSL--FDVIETVSREKTASLLSLEMIK------QSRFLPVYIQVNTGYEIQKSG 136
+++IV+L +I+TV K A L+ K + + L V IQ+NT E + G
Sbjct: 100 INKIVNLPNLHMIQTVHNAKLAEGLNKAWEKTKVEKPEKQQLNVLIQINTSGEDDRDG 157
>gi|23006220|ref|ZP_00048641.1| COG0325: Predicted enzyme with a TIM-barrel fold [Magnetospirillum
magnetotacticum MS-1]
Length = 156
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L + +++++A A R V L+ +K + +R + G + EN++QE
Sbjct: 14 IAQNLARVRTRVDDAARAAGRAASDVRLLVATKTQPADAVRTVVEAGADLIGENRVQELV 73
Query: 63 KKWIPLRKEWD---VQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K L V++ IG LQ NKV+++++ +E+V A L+ + R
Sbjct: 74 AKAPDLADLVTAGRVEVHMIGHLQRNKVNQVLATATGVESVDSLALAEALAARCARDGRV 133
Query: 120 LPVYIQVNTGYEIQKSGI 137
L V +QVN E KSG+
Sbjct: 134 LDVLVQVNVSGEESKSGV 151
>gi|299069052|emb|CBJ40303.1| Putative predicted enzyme with a tim-barrel fold protein (fragment)
[Ralstonia solanacearum CMR15]
Length = 129
Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats.
Identities = 45/105 (42%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + + ++ I+++AI + R D+V+LVA SK V+S +I+ A+ G +F EN++QEA
Sbjct: 4 TLEDNIGRIRKAIQHAAIDSGRRADAVTLVAASKTVESHRIQQAIDLGLTVFGENRVQEA 63
Query: 62 KKKWIPLRK-EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKT 105
KW LR ++L IG LQSNKV + V LFDVIE+V R +
Sbjct: 64 VSKWPELRSRNPGIELHLIGPLQSNKVRQAVGLFDVIESVDRSRL 108
>gi|315124219|ref|YP_004066223.1| hypothetical protein ICDCCJ07001_654 [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|315017941|gb|ADT66034.1| hypothetical protein ICDCCJ07001_654 [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
Length = 159
Score = 134 bits (339), Expect = 7e-30, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 6/148 (4%)
Query: 27 SVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPL-RKEWDVQLRFIGSLQSN 85
+V LVA SK VD+ I G V F EN++Q +K L K+ D++ FIG+LQSN
Sbjct: 12 NVRLVAASKYVDASIIEKLFDQGIVEFGENQVQALAQKKENLDEKKLDIKWHFIGTLQSN 71
Query: 86 KVSEIVSLFDVI-ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TK 143
K++ ++ ++ + + K A + + L +++N+ E KSG+ PNQ +
Sbjct: 72 KINLLIKQKPILWHSCNGIKIAKAMDKRL---DYKLNTLLEINSANENSKSGLDPNQAVE 128
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPK 171
+++ + + LN+ G+M I + +
Sbjct: 129 EYLQIQEECSNLNLCGVMSICSHSQDKE 156
>gi|207108930|ref|ZP_03243092.1| hypothetical protein HpylH_06059 [Helicobacter pylori
HPKX_438_CA4C1]
Length = 134
Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKK 63
++ KIE + I R V +VAVSK + I+ +C Q F ENK+Q+ K
Sbjct: 5 SQRIDTLIAKIEKARIAYSR-HHIVKIVAVSKNASLEAIQHYYNCSQRAFGENKVQDLKT 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRFLPV 122
K L + ++ IGSLQ NK++ ++SL ++ ++ K A + L
Sbjct: 64 KMHSL-EHLPLEWHMIGSLQENKINALLSLKPALLHSLDSLKLALKIEKRCEILGVNLNA 122
Query: 123 YIQVNTGYEIQK 134
+QVN+ YE K
Sbjct: 123 LLQVNSAYEESK 134
>gi|46107884|ref|XP_381001.1| hypothetical protein FG00825.1 [Gibberella zeae PH-1]
Length = 191
Score = 130 bits (329), Expect = 9e-29, Method: Composition-based stats.
Identities = 51/174 (29%), Positives = 78/174 (44%), Gaps = 26/174 (14%)
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK------QSRFLPVYIQ 125
+ +R G +S + +I +LF + ++ K A LL+ + + V++Q
Sbjct: 15 PGLHIRSSGHCKS--IGKIPNLF-CVSSIDTSKKAQLLNTTRANLLSSEPDAPKIGVHVQ 71
Query: 126 VNTGYEIQKSGIMP-NQTKDFV-ILCRQKYQLNVEGLMCIPPAM-------GNPKPHFYL 176
VNT E KSG P + T + L + GLM I F
Sbjct: 72 VNTSGEESKSGCAPGDDTVALCREIIETCSNLRLLGLMTIGAIARSKATTPETENEDFVS 131
Query: 177 LSE----IARECKLT----KLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L E +A+E L +LSMGM+ DFE A+ G++ VR+GS IFG+RP +
Sbjct: 132 LKEQRDLVAKELGLDPESLELSMGMSEDFEGAVRLGSSEVRVGSTIFGQRPAKA 185
>gi|289804061|ref|ZP_06534690.1| hypothetical protein Salmonellaentericaenterica_05882 [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 118
Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 48/109 (44%)
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
+ FIG LQSNK + FD T+ R + AS LS + L V IQ+N E
Sbjct: 3 GLHWHFIGPLQSNKSRLVAEHFDWCHTIDRLRIASRLSEQRPDNLPALNVLIQINISDEN 62
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA 181
KSGI + + +L + GLM IP + F + ++A
Sbjct: 63 SKSGIPLAELDELAAAVATLPRLRLRGLMAIPAPESDYVRQFEVARQMA 111
>gi|227202822|dbj|BAH56884.1| AT1G11930 [Arabidopsis thaliana]
Length = 121
Score = 129 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKK 64
L+ Q++ +A A R D + +VAVSK IR GQ F EN +QE +K
Sbjct: 25 AALRSVFQRVNQAAEKAGRGSDQIRVVAVSKTKPVSLIRQVYDAGQRSFGENYVQEIIEK 84
Query: 65 WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI 97
L + D++ FIG+LQSNKV ++ ++
Sbjct: 85 APQLPE--DIEWHFIGNLQSNKVKPLLCKLTLL 115
>gi|34764316|ref|ZP_00145149.1| PROLINE SYNTHETASE ASSOCIATED PROTEIN [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27885907|gb|EAA23250.1| PROLINE SYNTHETASE ASSOCIATED PROTEIN [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 122
Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 5/121 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
MS+ ++ + I + V LVAV+K + I L GQ I ENK+Q
Sbjct: 1 MSIKTNVEEILEDI----KKYSPYPEKVKLVAVTKYSSVEDIEEFLETGQNICGENKVQV 56
Query: 61 AKKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K K + K ++ FIG+LQ NKV I+ D+I +V++ A ++ + + +
Sbjct: 57 IKDKIEYFKEKNKKIKWHFIGNLQKNKVKYIIDDVDLIHSVNKLSLAQEINKKAEQSGKI 116
Query: 120 L 120
+
Sbjct: 117 M 117
>gi|299069051|emb|CBJ40302.1| Putative alanine racemase domain-containing enzyme with a
tim-barrel fold protein (fragment) [Ralstonia
solanacearum CMR15]
Length = 98
Score = 127 bits (321), Expect = 8e-28, Method: Composition-based stats.
Identities = 48/92 (52%), Positives = 59/92 (64%)
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL 186
N G E QK+G++P + + CR YQLNV GLMCIPPA +P HF L IA + L
Sbjct: 2 NIGKEPQKAGVLPAEAPALIGECRDVYQLNVRGLMCIPPAGLDPSGHFAGLRSIAEDHGL 61
Query: 187 TKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
LSMGM+ D+ AIA GAT VR+GS +FG R
Sbjct: 62 HILSMGMSADYPQAIAQGATHVRVGSALFGAR 93
>gi|164686340|ref|ZP_02210370.1| hypothetical protein CLOBAR_02778 [Clostridium bartlettii DSM
16795]
gi|164601942|gb|EDQ95407.1| hypothetical protein CLOBAR_02778 [Clostridium bartlettii DSM
16795]
Length = 116
Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 12/115 (10%)
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVEGLMCIPPAMGNPK---PHFY 175
+ +QVN E K G+ + +F+ + +KY + + GLM + P + + + F
Sbjct: 2 IDCLVQVNISKEETKHGLYKDDVVEFIKMVSEKYKNIRIRGLMTMAPFVDDEEVIESVFK 61
Query: 176 LLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
L +++ E + + LSMGM+ D+ +AI +GAT VR+G+ IFG R
Sbjct: 62 GLKDLSLEVESLGLENVYMNTLSMGMSHDYHIAIKNGATIVRVGTAIFGPRNYNN 116
>gi|154273182|ref|XP_001537443.1| hypothetical protein HCAG_07752 [Ajellomyces capsulatus NAm1]
gi|150415955|gb|EDN11299.1| hypothetical protein HCAG_07752 [Ajellomyces capsulatus NAm1]
Length = 182
Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats.
Identities = 45/173 (26%), Positives = 65/173 (37%), Gaps = 43/173 (24%)
Query: 2 SLGNKLQVFKQKIE---------NSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCG-QV 51
+L L +I + A+RP+ V LVAVSK+ + I++ +
Sbjct: 7 TLVTNLSAVTARITSASASANASQTRPQAQRPQCPVRLVAVSKLKPASDIQILHEYNPAL 66
Query: 52 IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF---DVIETVSREKTASL 108
F EN LQE +K L ++ FIG LQSNK + +E+V EK ASL
Sbjct: 67 HFGENYLQELLEKSKILP--PGIRWHFIGGLQSNKCVTLARDVRGLWAVESVDSEKKASL 124
Query: 109 LSLEMIKQ----------------------------SRFLPVYIQVNTGYEIQ 133
L ++ L V++QVNT E
Sbjct: 125 LDRGWGERGTQAGVGEDAATTTAAASALEGGDAGADGDRLRVFVQVNTSGEDS 177
>gi|238021818|ref|ZP_04602244.1| hypothetical protein GCWU000324_01722 [Kingella oralis ATCC 51147]
gi|237866432|gb|EEP67474.1| hypothetical protein GCWU000324_01722 [Kingella oralis ATCC 51147]
Length = 111
Score = 125 bits (316), Expect = 3e-27, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSE 179
I++N + K GI P + +LN+ GLMC+ N + F +
Sbjct: 2 LIEINISGDPAKHGIAPEELPALAQAIAPLPRLNLRGLMCVASHTDNSDQLRQQFTQMHS 61
Query: 180 IAREC-----KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ + + LSMGM+ D LAI GAT VRIGS IFG+R
Sbjct: 62 LLAQLRPHAPQADTLSMGMSSDMNLAIECGATMVRIGSAIFGKRDYPN 109
>gi|294993534|ref|ZP_06799225.1| hypothetical protein Mtub2_03254 [Mycobacterium tuberculosis 210]
Length = 189
Score = 124 bits (313), Expect = 8e-27, Method: Composition-based stats.
Identities = 29/172 (16%), Positives = 60/172 (34%), Gaps = 18/172 (10%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
L + L + ++ +A A R + L+ ++K + + + G E++ QEA
Sbjct: 18 LTHALAAMRSRLAAAAEAAGRNVGEIELLPITKFFPATDVAILFRLGCRSVGESREQEAS 77
Query: 63 KK---------WIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
K L V +G +Q NK + +V + + L +
Sbjct: 78 AKMAELNRLLAAAELGHSGGVHWHMVGRIQRNKAGSLARWAHTAHSVDSSRLVTALDRAV 137
Query: 114 I------KQSRFLPVYIQVNTGYEIQKSGIM---PNQTKDFVILCRQKYQLN 156
+ ++ L VY+QV+ + + G+ P ++ L
Sbjct: 138 VAALAEHRRGERLRVYVQVSLDGDGSRGGVDSTTPGAVDRICAQVQESEGLE 189
>gi|226328804|ref|ZP_03804322.1| hypothetical protein PROPEN_02704 [Proteus penneri ATCC 35198]
gi|225201990|gb|EEG84344.1| hypothetical protein PROPEN_02704 [Proteus penneri ATCC 35198]
Length = 115
Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
L V IQ+N E KSGI + + + GLM IP +L
Sbjct: 2 PPLNVLIQINISDENSKSGISLTELDGLAAQISILSGIKLRGLMAIPAPESKYDKQVEVL 61
Query: 178 SEIA--------RECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
++ + + LSMGMT D E AIA G+T VRIG+ IFG R T
Sbjct: 62 EKMHLAFKQLQSQYPDIDTLSMGMTSDMEAAIACGSTLVRIGTAIFGARNYAT 114
>gi|119583764|gb|EAW63360.1| proline synthetase co-transcribed homolog (bacterial), isoform
CRA_a [Homo sapiens]
Length = 169
Score = 120 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKD----SVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+ +G L+ ++++ + +A+RP+D LVAVSK + + A GQ F EN
Sbjct: 46 LGVGCALRAVNERVQQA--VARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGEN 103
Query: 57 KLQEAKKKWIP---LRKEWDVQLRFIGSLQSNKVSEIVSLFDV 96
+QE +K L +++ FIG LQ V++++ +
Sbjct: 104 YVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMGKIKL 146
>gi|73984115|ref|XP_851733.1| PREDICTED: similar to Proline synthetase co-transcribed bacterial
homolog protein [Canis familiaris]
Length = 145
Score = 119 bits (300), Expect = 2e-25, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 9 VFKQKIENSAILAKRPKDSV--SLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWI 66
K+ ++ + R +V LVAVSK + + A GQ F E +QE +K
Sbjct: 19 TVKECMQQAVAWRPRDLPAVQPRLVAVSKTKPVETVIEAYCHGQHTFGEKYVQELLEKAS 78
Query: 67 P---LRKEWDVQLRFIGSLQSNKVSEI--VSLFDVIETVSREKTASLLSLEMIKQ 116
L +++ FIG LQ V+++ + ++ETV K A ++ ++
Sbjct: 79 NPKILSSCPEIKWHFIGHLQKQNVNKLMAIPNLFMLETVDSVKLADKVNSLWQEK 133
>gi|313223168|emb|CBY43394.1| unnamed protein product [Oikopleura dioica]
Length = 170
Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats.
Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 23/170 (13%)
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
D++ FIGS+Q ++ I+ ++ I+T++ + + + + +Q NT
Sbjct: 2 CPDIRFHFIGSIQKKNINSIIKAPNLVGIQTLASMDIIENVDKRLTS---SVNIMLQCNT 58
Query: 129 GYEIQKSGIMPNQ-TKDFVILCRQKYQ-LNVEGLMCI--------PPAMGNPKPHFYLLS 178
E K G + + + + + +EGLM I P F L
Sbjct: 59 SGEENKGGFLEEEELFRAAEFVKNESNFMKLEGLMTIGSVENSKRAAEENIPNADFTRLH 118
Query: 179 EIAREC--KLTK------LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
E+ ++ +L LSMGM+ D+ AI GA+ +R+GS IFG R
Sbjct: 119 ELRQKVAERLKISPDELSLSMGMSTDYLAAIEQGASVIRVGSKIFGARNY 168
>gi|329574347|gb|EGG55919.1| YlmE family protein [Enterococcus faecalis TX1467]
Length = 122
Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 51/114 (44%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +++ + ++R V+++ V+K V ++ + G AEN++ +
Sbjct: 2 IAENLTNINNQLQLACKSSQRSVADVTMIGVTKSVGIEEAAELVQLGVQNLAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+K L K D+Q IG+LQ KV I++ D + A + + ++
Sbjct: 62 EKKAGLEKFNDIQWHLIGNLQRRKVKLIINEIDYFHALDSLSLAKEIQKKEQRK 115
>gi|255971452|ref|ZP_05422038.1| LOW QUALITY PROTEIN: predicted protein [Enterococcus faecalis T1]
gi|255962470|gb|EET94946.1| LOW QUALITY PROTEIN: predicted protein [Enterococcus faecalis T1]
Length = 121
Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 14/120 (11%)
Query: 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA 166
L K + +++VN E K G F+ ++ + GLM + P
Sbjct: 2 KKLQKRATK---VIRCFVEVNITGEESKHGFRKEDVLPFIQELADLDKIQIVGLMTMAPF 58
Query: 167 MGNPK---PHFYLLSEIA-----RECKL---TKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + F L E+ + T+LSMGM+ DF +A+ GAT +RIG+ +F
Sbjct: 59 GASEEVLHATFRELKELQMTVNEKHLSFAPCTELSMGMSNDFPIAVEEGATFIRIGTALF 118
>gi|294779252|ref|ZP_06744656.1| conserved domain protein [Enterococcus faecalis PC1.1]
gi|294453619|gb|EFG22017.1| conserved domain protein [Enterococcus faecalis PC1.1]
Length = 119
Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM 167
+ K + +++VN E K G F+ ++ + GLM + P
Sbjct: 1 EIQKRATK---VIRCFVEVNITGEESKHGFRKEDVLPFIQELADLDKIQIVGLMTMAPFG 57
Query: 168 GNPK---PHFYLLSEIA-----RECKL---TKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + F L E+ + T+LSMGM+ DF +A+ GAT +RIG+ +F
Sbjct: 58 ASEEVLHATFRELKELQMTVNEKHLSFAPCTELSMGMSNDFPIAVEEGATFIRIGTALF 116
>gi|294780587|ref|ZP_06745950.1| conserved domain protein [Enterococcus faecalis PC1.1]
gi|294452414|gb|EFG20853.1| conserved domain protein [Enterococcus faecalis PC1.1]
Length = 106
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 47/105 (44%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +++ + ++R V+++ V+K V ++ + G AEN++ +
Sbjct: 2 IAENLTNINNQLQLACKSSQRSVADVTMIGVTKSVGIEEAAELVQLGVQNLAENRVDKLL 61
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS 107
+K L K D+Q IG+LQ KV I++ D + A
Sbjct: 62 EKKAGLEKFNDIQWHLIGNLQRRKVKLIINEIDYFHALDSLSLAK 106
>gi|225463488|ref|XP_002263539.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|225467157|ref|XP_002269853.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 207
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L L+ ++ +A + R D V ++AVS+ I G F E+ +QE
Sbjct: 45 MTLARPLRSVIFRVRQTAERSDRRSDQVRVMAVSRTKPVSHIWQVHDVGHRCFGESYVQE 104
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS---LFDVIETVSREKTASLLSLEMI 114
++ L K D++ FI L+SNK+ ++++ ++E V+ EK A + ++
Sbjct: 105 MNERAPQLPK--DIEWYFIEHLRSNKMKQLLATVLNLAMVEGVNNEKKAFEAAKQLQ 159
>gi|147779422|emb|CAN72285.1| hypothetical protein VITISV_013531 [Vitis vinifera]
Length = 940
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQE 60
M+L L+ ++ +A + R D V ++AVS+ I G F E+ +QE
Sbjct: 651 MTLARPLRSVIFRVRQTAERSDRRSDQVRVMAVSRTKPVSHIWQVHDVGHRCFGESYVQE 710
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS---LFDVIETVSREKT 105
++ L K D++ FI L+SNK+ ++++ ++E V+ EK
Sbjct: 711 MNERAPQLPK--DIEWYFIEHLRSNKMKQLLATVLNLAMVEGVNNEKK 756
>gi|316963953|gb|EFV49297.1| proline synthetase [Trichinella spiralis]
Length = 249
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 57/137 (41%), Gaps = 21/137 (15%)
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRF-------LPVYIQVNTGYEIQKSGIMPNQTKD 144
+ ETV K A L+ + R + V +QVNT EIQK G P Q
Sbjct: 3 PICTWFETVDSVKLAETLNRVA--RGRVDQTLLGKINVMLQVNTSGEIQKHGCEPEQVLQ 60
Query: 145 FVI-LCRQKYQLNVEGLMCIPPAM---GNPKPHFYLLSEIAR--------ECKLTKLSMG 192
+ + L + GLM I A + F L +I E +LSMG
Sbjct: 61 LARMVVQDCPFLQLIGLMTIGTASSCAEVARGEFSKLFQIRNQICTDLDWEVGQLELSMG 120
Query: 193 MTRDFELAIASGATSVR 209
M+ DF+ AI G++SVR
Sbjct: 121 MSNDFQEAICCGSSSVR 137
>gi|213024386|ref|ZP_03338833.1| hypothetical protein Salmonelentericaenterica_18511 [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 96
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 136 GIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIA--------RECKLT 187
GI + + +L + GLM IP + F + ++A R +
Sbjct: 1 GIPLAELDELAAAVATLPRLRLRGLMAIPAPESDYVRQFEVARQMAVAFAGLKARYPDVD 60
Query: 188 KLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 61 TLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 93
>gi|294871581|ref|XP_002765978.1| proline synthetase associated protein, putative [Perkinsus marinus
ATCC 50983]
gi|239866464|gb|EEQ98695.1| proline synthetase associated protein, putative [Perkinsus marinus
ATCC 50983]
Length = 173
Score = 102 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 21/161 (13%)
Query: 40 KKIRVALS-CGQVIF-AE--NKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS---EIVS 92
+ A CG F E ++ E K + + D+Q IG LQ NKV+ + V
Sbjct: 7 DMLMEAYEKCGPEAFWGELRARVDE---KAKEMPQ--DIQWHMIGHLQRNKVAPLLKAVP 61
Query: 93 LFDVIETVSREKTASLLSLEMIK------QSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDF 145
+E+V K A L+ +S L V+I+V T EI K+GI ++
Sbjct: 62 HLYAVESVDSIKLADKLNAAAATAMDEGLRSDPLNVFIEVMTSDEITKTGIEKDEDIDAL 121
Query: 146 VILCR-QKYQLNVEGLMCIP-PAMGNPKPHFYLLSEIAREC 184
L + GLM + P + + +F L+ I
Sbjct: 122 AEHIATHCQGLKLFGLMTVANPDLAVARENFERLAAIGERV 162
>gi|329574346|gb|EGG55918.1| hypothetical protein HMPREF9520_01968 [Enterococcus faecalis
TX1467]
Length = 104
Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 11/100 (11%)
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEIA-- 181
N E K G F+ ++ + GLM + P + + F L E+
Sbjct: 2 NITGEESKHGFRKEDVLPFIQELADLDKIQIVGLMTMAPFGASEEVLHATFRELKELQMT 61
Query: 182 ---RECKL---TKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ T+LSMGM+ DF +A+ GAT +RIG+ +F
Sbjct: 62 VNEKHLSFAPCTELSMGMSNDFPIAVEEGATFIRIGTALF 101
>gi|170090440|ref|XP_001876442.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647935|gb|EDR12178.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 186
Score = 94.7 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 56/148 (37%), Gaps = 38/148 (25%)
Query: 109 LSLEMI-KQSRFLPVYIQVNTGYEIQKSGIMPN---------QTKDFVILC-RQKYQLNV 157
L+ + + L V+IQVNT E KSG+ P + + +L +
Sbjct: 34 LNKALPSDRPHPLRVFIQVNTSGETSKSGLDPLSSASDLDSSELAQLARYVLTECPKLWL 93
Query: 158 EGLMCIPPAMG-------NPKPHFYLLSEIAR--------------------ECKLTKLS 190
EGLM I F L E LS
Sbjct: 94 EGLMTIGALELSLSSSEVEKNADFEKLKETRDVLDEYLGGLSGDGEKRWGREGLGGLALS 153
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGM+ DFE A+ +G+ VR+G+GIFG+R
Sbjct: 154 MGMSSDFEAALKAGSDIVRVGTGIFGQR 181
>gi|229092946|ref|ZP_04224079.1| Alanine racemase domain protein [Bacillus cereus Rock3-42]
gi|228690450|gb|EEL44234.1| Alanine racemase domain protein [Bacillus cereus Rock3-42]
Length = 104
Score = 94.3 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE 183
T E K G+ +T F+ ++ ++ V GLM + P + F L + +E
Sbjct: 2 KTSSEESKQGLAIEETVSFIQSLQELDKIEVVGLMTMAPFTEEEEEIRRCFKELRMLQKE 61
Query: 184 CK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ +LSMGM+ D+ +AI GAT +R+G+ + G+
Sbjct: 62 VQGLELLHAPCKELSMGMSNDYTIAIEEGATYIRLGTILVGK 103
>gi|260461326|ref|ZP_05809574.1| enzyme with a TIM-barrel fold-like protein [Mesorhizobium
opportunistum WSM2075]
gi|319785491|ref|YP_004144967.1| alanine racemase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|259032863|gb|EEW34126.1| enzyme with a TIM-barrel fold-like protein [Mesorhizobium
opportunistum WSM2075]
gi|317171379|gb|ADV14917.1| alanine racemase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 156
Score = 93.6 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKW 65
L +++I + A R + SV L+ V+K V ++ +R A G F ENK+QEA K
Sbjct: 27 NLASVEERITLACARAGRDRASVRLLPVTKTVPAQILRYAFEVGISTFGENKIQEAMSKC 86
Query: 66 IPLRKEWDVQL 76
L +
Sbjct: 87 EALHD-LAIDW 96
>gi|164686341|ref|ZP_02210371.1| hypothetical protein CLOBAR_02779 [Clostridium bartlettii DSM
16795]
gi|164601943|gb|EDQ95408.1| hypothetical protein CLOBAR_02779 [Clostridium bartlettii DSM
16795]
Length = 71
Score = 91.6 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
K+ R + V+L+AV+K VD + A+ G ENK QE +K+ + +
Sbjct: 2 KLHQICNDCGRNPEDVNLMAVTKTVDVDAVLEAIEAGITDVGENKPQELARKYEVIGDK- 60
Query: 73 DVQLRFIGSL 82
V IG+
Sbjct: 61 -VNWHLIGTF 69
>gi|225467453|ref|XP_002263399.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 111
Score = 91.2 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEW 72
++ +A ++ R + V ++A+SK IR + G F E+ +QE ++ L K
Sbjct: 9 RVRQTAEMSGRRSNQVRVMAISKPKPVSHIRQVHNVGHRCFGESYIQEMNERAPQLPK-- 66
Query: 73 DVQLRFIGSLQSNKVSEIVS---LFDVIETVSREKTASL 108
D++ F+ L+SNK+ ++++ ++E V+ EK A
Sbjct: 67 DLEWYFMEHLRSNKMKQLLATVLNLAMVEGVNNEKKALE 105
>gi|257483588|ref|ZP_05637629.1| hypothetical protein PsyrptA_10058 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 86
Score = 89.7 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 154 QLNVEGLMCIPPAMGNPKPH---FYLLSEIARECKL--TKLSMGMTRDFELAIASGATSV 208
+L + GLM IP +P F + + + L LSMGM+ D E AIA GAT V
Sbjct: 12 RLKLRGLMAIPEPTDDPAAQHASFAAVRTLQEQLNLALDTLSMGMSHDLEAAIAQGATWV 71
Query: 209 RIGSGIFGERPC 220
RIG+ +FG R
Sbjct: 72 RIGTALFGARDY 83
>gi|78059213|gb|ABB17982.1| conserved hypothetical protein [Aggregatibacter segnis ATCC
33393]
Length = 63
Score = 88.6 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAK 62
+ L +++I + +V L+AVSK + I A GQ+ F EN +QE
Sbjct: 2 IAQNLAHIQEQITQ-CECHSETQSAVKLLAVSKTKPIEDILTAYEAGQMAFGENYVQEGV 60
Query: 63 KKW 65
KK+
Sbjct: 61 KKF 63
>gi|167847187|ref|ZP_02472695.1| hypothetical protein BpseB_18072 [Burkholderia pseudomallei B7210]
Length = 89
Score = 86.6 bits (214), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 152 KYQLNVEGLMCIPPAMGNPKPHF---YLLSEIARECK-----LTKLSMGMTRDFELAIAS 203
L + GLM IP +P+ L + + + L LSMGM+ D E A+A
Sbjct: 11 LPALRLRGLMAIPEPETDPEAKRAPHRALHALFEQLRAGGLALDTLSMGMSDDLEAAVAE 70
Query: 204 GATSVRIGSGIFGERPC 220
GAT VRIG+ IFG R
Sbjct: 71 GATIVRIGTAIFGARDY 87
>gi|167837776|ref|ZP_02464659.1| hypothetical protein Bpse38_14902 [Burkholderia thailandensis
MSMB43]
Length = 84
Score = 85.9 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPHF---YLLSEIARECK-----LTKLSMGMTRDFEL 199
L + GLM IP +P+ L + + + L LSMGM+ D E
Sbjct: 2 AVAALPALRLRGLMAIPEPATDPEAKRAPHRALHALLEQLRAGGLALDTLSMGMSDDLEA 61
Query: 200 AIASGATSVRIGSGIFGERPC 220
A+A GAT VRIG+ IFG R
Sbjct: 62 AVAEGATIVRIGTAIFGARDY 82
>gi|34762614|ref|ZP_00143607.1| PROLINE SYNTHETASE ASSOCIATED PROTEIN [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27887694|gb|EAA24770.1| PROLINE SYNTHETASE ASSOCIATED PROTEIN [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 78
Score = 84.7 bits (209), Expect = 9e-15, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 10/76 (13%)
Query: 150 RQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARECK-------LTKLSMGMTRDFEL 199
+ LN+ G+M + P + + F L +I E LT+LSMGM+ D+++
Sbjct: 2 QNLKNLNIIGVMTMAPFTDDEKILRMVFSELRKIKGELNKEYFNNNLTELSMGMSNDYKI 61
Query: 200 AIASGATSVRIGSGIF 215
A+ G+T +R+G+ IF
Sbjct: 62 ALQEGSTFIRVGTKIF 77
>gi|167721106|ref|ZP_02404342.1| hypothetical protein BpseD_19006 [Burkholderia pseudomallei DM98]
Length = 75
Score = 82.8 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 156 NVEGLMCIPPAMGNPKPHF---YLLSEIARECK-----LTKLSMGMTRDFELAIASGATS 207
+ GLM IP +P+ L + + + L LSMGM+ D E A+A GAT
Sbjct: 1 RLRGLMAIPEPETDPEAKRAPHRALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATI 60
Query: 208 VRIGSGIFGERPC 220
VRIG+ IFG R
Sbjct: 61 VRIGTAIFGARDY 73
>gi|258615780|ref|ZP_05713550.1| hypothetical protein EfaeD_08719 [Enterococcus faecium DO]
Length = 88
Score = 82.0 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEIARECKLT--------KLS 190
FV ++ V GLM + P + + F L E+ + +LS
Sbjct: 1 LLPFVESLAACTKIKVVGLMTMAPKEASDEQIHKVFGTLKELRDLVQAKGYAHAPCSELS 60
Query: 191 MGMTRDFELAIASGATSVRIGSGIF 215
MGM++DF++AI GAT +R+G+ +F
Sbjct: 61 MGMSQDFQIAIEEGATFIRVGTALF 85
>gi|167948452|ref|ZP_02535526.1| hypothetical protein Epers_18686 [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 84
Score = 77.8 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
NK I FD + ++ K A L+ + L IQ+NT E K G P++ +
Sbjct: 1 NKTKPIAEWFDWVHSLGSLKHARRLNQQRPPGLAPLKACIQINTSGEASKGGHSPDELLE 60
Query: 145 FV 146
+
Sbjct: 61 LL 62
>gi|238574406|ref|XP_002387549.1| hypothetical protein MPER_13663 [Moniliophthora perniciosa FA553]
gi|215443236|gb|EEB88479.1| hypothetical protein MPER_13663 [Moniliophthora perniciosa FA553]
Length = 73
Score = 75.8 bits (186), Expect = 4e-12, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
L L ++++ +SA +LVAVSK S I V GQ F EN +QE
Sbjct: 18 ELRESLSEIRERVGSSA----------TLVAVSKYKPSSDIFVCYENGQKDFGENYVQEL 67
Query: 62 KKKWIP 67
K
Sbjct: 68 VDKAKE 73
>gi|331084010|ref|ZP_08333117.1| hypothetical protein HMPREF0992_02041 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330402372|gb|EGG81942.1| hypothetical protein HMPREF0992_02041 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 59
Score = 75.1 bits (184), Expect = 6e-12, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 181 ARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ LSMGMT D+E+AI GAT VR+G+GIFGER
Sbjct: 18 FDNVTMDVLSMGMTGDYEVAIEEGATHVRVGTGIFGERNY 57
>gi|289804088|ref|ZP_06534717.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 50
Score = 72.8 bits (178), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 173 HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 2 AFAGLK--ARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 47
>gi|213421344|ref|ZP_03354410.1| hypothetical protein Salmonentericaenterica_27899 [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 53
Score = 72.0 bits (176), Expect = 6e-11, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 173 HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 5 AFAGLK--ARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 50
>gi|213582384|ref|ZP_03364210.1| hypothetical protein SentesTyph_14771 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 58
Score = 71.2 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 173 HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 10 AFAGLK--ARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 55
>gi|213618819|ref|ZP_03372645.1| alanine racemase family protein [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 60
Score = 70.8 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 173 HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L AR + LS+GM+ D E AIA+G+T VRIG+ IFG R
Sbjct: 12 AFAGLK--ARYPDVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 57
>gi|254383751|ref|ZP_04999100.1| hypothetical protein SSAG_03402 [Streptomyces sp. Mg1]
gi|194342645|gb|EDX23611.1| hypothetical protein SSAG_03402 [Streptomyces sp. Mg1]
Length = 75
Score = 69.7 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 156 NVEGLMCIPPAMGNPKPHFYLLS-----EIARECKLTKLSMGMTRDFELAIASGATSVRI 210
V G+M + + G+ F L + +S GM+ D E AIA+GAT VR+
Sbjct: 1 MVAGVMAVATSPGDGHEAFARLRPVRERLLGEHPGAVVMSAGMSGDLEAAIAAGATHVRV 60
Query: 211 GSGIFGERP 219
GS I G RP
Sbjct: 61 GSAILGHRP 69
>gi|167895772|ref|ZP_02483174.1| hypothetical protein Bpse7_18671 [Burkholderia pseudomallei 7894]
Length = 48
Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 174 FYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F L A L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 2 FEQLR--AGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDY 46
>gi|167825701|ref|ZP_02457172.1| hypothetical protein Bpseu9_18662 [Burkholderia pseudomallei 9]
Length = 66
Score = 68.5 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 175 YLLSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L + + + L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 14 RALHALFEQLRAGGLALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDY 64
>gi|255522097|ref|ZP_05389334.1| pyridoxal phosphate enzyme, YggS family protein [Listeria
monocytogenes FSL J1-175]
Length = 84
Score = 68.5 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 150 RQKYQLNVEGLMCIPPAMG-NPKPH--FYLLSEIARECKL--------TKLSMGMTRDFE 198
+ + GLM + P + + H F+ L ++ +E T+LSMGMT D+
Sbjct: 1 ANFTFIEIVGLMTMAPITNSDIELHHVFHELKQLQQEIHALQLNNIPCTELSMGMTNDYG 60
Query: 199 LAIASGATSVRIGSGI 214
+AI GAT +R+G +
Sbjct: 61 VAITEGATFIRVGRAL 76
>gi|167740076|ref|ZP_02412850.1| hypothetical protein Bpse14_18588 [Burkholderia pseudomallei 14]
Length = 44
Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 24/37 (64%)
Query: 184 CKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
L LSMGM+ D E A+A GAT VRIG+ IFG R
Sbjct: 6 LALDTLSMGMSDDLEAAVAEGATIVRIGTAIFGARDY 42
>gi|99082592|ref|YP_614746.1| alanine racemase-like [Ruegeria sp. TM1040]
gi|99038872|gb|ABF65484.1| alanine racemase-like protein [Ruegeria sp. TM1040]
Length = 351
Score = 65.4 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 10/125 (8%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEG 159
LS ++ LPV ++ NTG + + G+ P L G
Sbjct: 108 DNLTVVEGLSAGFAGANKPLPVLVECNTGAD--RCGVETPEAALALAQAIDAAPGLKFAG 165
Query: 160 LMCIPPAMGNPKPHFYLLSEIARECKLTKL-----SMGMTRDFELAIASG-ATSVRIGSG 213
LM PP G L+E + T L S G + D A AT R+G+
Sbjct: 166 LMTYPPVGG-AAKVTTWLAEAKARIEATDLTVEVISSGGSPDMWQAHEMPLATEYRVGTY 224
Query: 214 IFGER 218
++ +R
Sbjct: 225 VYNDR 229
>gi|116200203|ref|XP_001225913.1| hypothetical protein CHGG_08257 [Chaetomium globosum CBS 148.51]
gi|88179536|gb|EAQ87004.1| hypothetical protein CHGG_08257 [Chaetomium globosum CBS 148.51]
Length = 182
Score = 65.1 bits (158), Expect = 6e-09, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 26/124 (20%)
Query: 99 TVSREKTASLLSL------EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ- 151
++ K A LL + +++ L +++QVNT E KSG P + + V LCR
Sbjct: 62 SIDNLKKAQLLDKYRGEKIKAEPETQKLNIHVQVNTSGEESKSGCAPGE--ELVSLCRSI 119
Query: 152 ---KYQLNVEGLMCI-------PPAMGNPKPHFYLLSEIAR-ECKLTKLSMGMTRDFELA 200
L++ GLM I N F + E C+ T L G
Sbjct: 120 VNDCPSLHLLGLMTIGAIARSVATTAENENEDFKVAGEAEGFGCQRTGLEQGTG------ 173
Query: 201 IASG 204
+ G
Sbjct: 174 VEHG 177
>gi|301059502|ref|ZP_07200415.1| alanine racemase [delta proteobacterium NaphS2]
gi|300446397|gb|EFK10249.1| alanine racemase [delta proteobacterium NaphS2]
Length = 372
Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats.
Identities = 49/230 (21%), Positives = 92/230 (40%), Gaps = 32/230 (13%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKI-RVALSCGQVIFAENKLQE 60
L + I + + + L+AV K + ++ ALS G +E
Sbjct: 16 NLGAVEHNIAAAREKIGKNR---KLMAVVKADGYGHGALEVSTKALSSGADCLGVAFPEE 72
Query: 61 AKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A PLRK D + +G +Q ++ +++ L + +TV + A L+ S
Sbjct: 73 A----EPLRKAGIDAPILALGLIQPDEAYKVIDL-GLEQTVCSLELAEALNGAAGNASVK 127
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF----- 174
+ V+I+V+TG + G++P+ ++ RQ LN++G+ F
Sbjct: 128 IDVHIKVDTGM--GRIGVLPHDLLEYCRKIRQLKHLNLKGIFSHFACADENDADFTNRQI 185
Query: 175 YLLSEIARECKLTKLSMGMTRDFELAIASG------AT--SVRIGSGIFG 216
+ + RE + +S+ LA ++G + VR G I+G
Sbjct: 186 RIFDQAVREMAASGISVPQKH---LANSAGILAHPASHYDLVRPGIMIYG 232
>gi|253577874|ref|ZP_04855146.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850192|gb|EES78150.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 35
Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
MGMT D+++A+ GAT VR+G+GIFGER
Sbjct: 1 MGMTNDYQVAVEEGATMVRVGTGIFGERDYS 31
>gi|259417560|ref|ZP_05741479.1| alanine racemase domain protein [Silicibacter sp. TrichCH4B]
gi|259346466|gb|EEW58280.1| alanine racemase domain protein [Silicibacter sp. TrichCH4B]
Length = 351
Score = 63.9 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 8/124 (6%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEG 159
LS + L V ++ NTG + + G+ P + + + L G
Sbjct: 108 DNAAVVEGLSAGFADAKKPLAVLVECNTGAD--RCGVETPAEALELALAINAAPGLRFAG 165
Query: 160 LMCIPPAMGNPK--PHFYLLSEI--ARECKLTKLSMGMTRDFELAIASG-ATSVRIGSGI 214
LM PP G + ++ A + + +S G + D A AT RIG+ I
Sbjct: 166 LMTYPPTGGATQVTTWLAEAKDLIEATDLTVEVISSGGSPDIWRAHQMPLATEYRIGTYI 225
Query: 215 FGER 218
+ +R
Sbjct: 226 YNDR 229
>gi|229092947|ref|ZP_04224080.1| hypothetical protein bcere0021_36930 [Bacillus cereus Rock3-42]
gi|228690451|gb|EEL44235.1| hypothetical protein bcere0021_36930 [Bacillus cereus Rock3-42]
Length = 65
Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
+ LVAV+K V +K + G + EN+ + +K+ + V F
Sbjct: 2 QDIKLVAVTKTVGIEKTNEVIEAGIIDLGENRNEGFLQKYEHFGSK--VNWHF 52
>gi|86159846|ref|YP_466631.1| alanine racemase [Anaeromyxobacter dehalogenans 2CP-C]
gi|85776357|gb|ABC83194.1| alanine racemase [Anaeromyxobacter dehalogenans 2CP-C]
Length = 395
Score = 62.7 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/173 (21%), Positives = 70/173 (40%), Gaps = 20/173 (11%)
Query: 58 LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
+ EA++ R D L IG ++ + +V+L + V LS E ++
Sbjct: 74 VDEAEE---LRRAGLDAPLLVIGHTPASDAARVVAL-GLRPAVGAMDLVEALSAEAGRRG 129
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC--IPPAMGN---PKP 172
+P+++++ +G + + G+ P+ R L VEGL G+ +
Sbjct: 130 AEVPIHLELESG--LNRHGLTPDALVALAERARALPGLRVEGLFTHFAAAEEGDQRFTRA 187
Query: 173 HFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
F +L + +R S + D E+A+ + VR G ++G RP
Sbjct: 188 QFEVLRDTSRRLPWVPERHCAASASILLDHEMALEA----VRGGLSLYGYRPA 236
>gi|284107226|ref|ZP_06386367.1| Alanine racemase [Candidatus Poribacteria sp. WGA-A3]
gi|283829973|gb|EFC34252.1| Alanine racemase [Candidatus Poribacteria sp. WGA-A3]
Length = 386
Score = 62.4 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 43/182 (23%), Positives = 75/182 (41%), Gaps = 21/182 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVAL-SCGQVIFAEN 56
+L + L+ ++ +LA R V ++AV K K + AL G F
Sbjct: 18 ALAHNLRELRR------VLAPR----VDILAVIKANGYGHGYKALAEALSQLGVRRFGVA 67
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ E R E + + G + +V ++V ++I T+S T LS E+ +
Sbjct: 68 SVHEGVLLREAGRLEDVIVM---GGMLPGQVKDLV-HANLIPTLSDADTMHALSREVSQH 123
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
R P++++V+TG + G + + + L+ +GLM NP P F L
Sbjct: 124 DRPYPIHVKVDTGMR--RLGFTTREVLPLLQSPAFSHLLSCQGLMTHLADADNPDPAFTL 181
Query: 177 LS 178
L
Sbjct: 182 LQ 183
>gi|197123899|ref|YP_002135850.1| alanine racemase [Anaeromyxobacter sp. K]
gi|196173748|gb|ACG74721.1| alanine racemase [Anaeromyxobacter sp. K]
Length = 395
Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 16/132 (12%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
V LS E ++ +P+++++ +G + + G+ P+ R L VE
Sbjct: 111 AVGAMDLVEALSAEARRRGAEVPIHLELESG--LNRHGLSPDALVALAERARALPGLRVE 168
Query: 159 GLMC--IPPAMGN---PKPHFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSV 208
GL G+ + F +L E +R S + D E+A+ + V
Sbjct: 169 GLFTHFAAAEEGDQRFTRAQFEVLRETSRRLPWVPERHCAASASILLDHEMALEA----V 224
Query: 209 RIGSGIFGERPC 220
R G ++G RP
Sbjct: 225 RGGLSLYGYRPA 236
>gi|220918668|ref|YP_002493972.1| alanine racemase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219956522|gb|ACL66906.1| alanine racemase [Anaeromyxobacter dehalogenans 2CP-1]
Length = 395
Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 16/132 (12%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
V LS E ++ +P+++++ +G + + G+ P+ R L VE
Sbjct: 111 AVGAMDLVEALSAEARRRGAEVPIHLELESG--LNRHGLPPDALVALAERARALPGLRVE 168
Query: 159 GLMC--IPPAMGN---PKPHFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSV 208
GL G+ + F +L E +R S + D E+A+ + V
Sbjct: 169 GLFTHFAAAEEGDQRFTRAQFEVLRETSRRLPWVPERHCSASASILLDHEMALEA----V 224
Query: 209 RIGSGIFGERPC 220
R G ++G RP
Sbjct: 225 RGGLSLYGYRPA 236
>gi|307320836|ref|ZP_07600246.1| alanine racemase domain protein [Sinorhizobium meliloti AK83]
gi|306893546|gb|EFN24322.1| alanine racemase domain protein [Sinorhizobium meliloti AK83]
Length = 352
Score = 61.2 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 10/125 (8%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEG 159
L+ + L V ++ NTG + + G+ P++ + L G
Sbjct: 109 DNATVVDGLAAFFADAGKPLTVLVECNTGAD--RCGVGTPSEAARLARRIAEAPGLRFGG 166
Query: 160 LMCIPPAMGNPKPHFYLLSEIARECKLTKLSM------GMTRDFELAIASGATSVRIGSG 213
LM PPA G + +SE R + L + G + A A A+ R G+
Sbjct: 167 LMTYPPADGAARVQ-AFMSEAKRLIEAEGLEVPCITSGGTPGMMQAAEAPIASEHRPGTY 225
Query: 214 IFGER 218
I+ +R
Sbjct: 226 IYNDR 230
>gi|295115170|emb|CBL36017.1| Predicted enzyme with a TIM-barrel fold [butyrate-producing
bacterium SM4/1]
Length = 36
Score = 60.4 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGMT D+E+AI GAT +R+G+GIFG R
Sbjct: 1 MGMTGDYEVAIEEGATMIRVGTGIFGAR 28
>gi|297620915|ref|YP_003709052.1| putative bifunctional UDP-N-acetylmuramoyl-
tripeptide:D-alanyl-D-alanine ligase/alanine racemase
[Waddlia chondrophila WSU 86-1044]
gi|297376216|gb|ADI38046.1| putative bifunctional UDP-N-acetylmuramoyl-
tripeptide:D-alanyl-D-alanine ligase/alanine racemase
[Waddlia chondrophila WSU 86-1044]
Length = 813
Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/227 (18%), Positives = 81/227 (35%), Gaps = 26/227 (11%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSK-----MVDSKKIRVALSCGQVIFAENKLQE 60
L I+ I ++ + ++A+ K D+ + + G + + E
Sbjct: 451 NLAAIASNIKQ--IRSRLTPHT-EIMAMVKATAYGTQDALMAKFLKTEGIRRLGVSYIDE 507
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
LRKE Q F+ + ++ + VS I V+ ++T + ++
Sbjct: 508 GIS----LRKEGVDQDIFVLNAAPYEIEKAVSWQFEI-AVNDKETIDQIGRMSSERGTIT 562
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE- 179
V++ +NTG + G P + + + L +EG+M NP + L +
Sbjct: 563 RVHLHINTGM--SRLGCRPEEALPLARIIQAHPHLKLEGVMTHFACSDNPDEDTFTLEQS 620
Query: 180 -IARECKLTKLSMGMTRDFELAIASGA---------TSVRIGSGIFG 216
I G++ F A S A VRIG ++G
Sbjct: 621 RIFDHSIEAIEQEGISIPFRHACNSAAALRLHFPQYNIVRIGMALYG 667
>gi|224135085|ref|XP_002321980.1| predicted protein [Populus trichocarpa]
gi|222868976|gb|EEF06107.1| predicted protein [Populus trichocarpa]
Length = 71
Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 26 DSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL 82
+ +VA++K IR G +N QE K+K K D++ F+G+L
Sbjct: 17 QQIRVVAITKARPVSLIRQVTEMGSRCLGKNYAQEVKEKAPQFSK--DIEWDFLGNL 71
>gi|307306768|ref|ZP_07586509.1| alanine racemase domain protein [Sinorhizobium meliloti BL225C]
gi|306902059|gb|EFN32657.1| alanine racemase domain protein [Sinorhizobium meliloti BL225C]
Length = 352
Score = 60.4 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 10/125 (8%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEG 159
L+ + L V ++ NTG + + G+ P++ + L G
Sbjct: 109 DNATVVDGLAAFFADAGKPLTVLVECNTGAD--RCGVGTPSEAARLARRIAEAPGLRFGG 166
Query: 160 LMCIPPAMGNPKPHFYLLSEIARECKLTKLSM------GMTRDFELAIASGATSVRIGSG 213
LM PPA G + +S+ R + L + G + A A A+ R G+
Sbjct: 167 LMTYPPADGAARVQ-AFMSDAKRLIEAEGLEVPCITSGGTPGMMQAAEAPIASEHRPGTY 225
Query: 214 IFGER 218
I+ +R
Sbjct: 226 IYNDR 230
>gi|16264461|ref|NP_437253.1| putative amino acid processing enzyme, low specificity D-threonine
aldolase protein [Sinorhizobium meliloti 1021]
gi|15140598|emb|CAC49113.1| amino acid aldolase or racemase [Sinorhizobium meliloti 1021]
Length = 352
Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 10/125 (8%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEG 159
L+ + L V ++ NTG + + G+ P++ + L G
Sbjct: 109 DNATVVDGLAAFFADAGKPLTVLVECNTGAD--RCGVGTPSEAARLARRIAEAPGLRFGG 166
Query: 160 LMCIPPAMGNPKPHFYLLSEIARECKLTKLSM------GMTRDFELAIASGATSVRIGSG 213
LM PPA G + +S+ R + L + G + A A A+ R G+
Sbjct: 167 LMTYPPADGAARVQ-AFMSDAKRLIEAEGLEVPCITSGGTPGMMQAAEAPIASEHRPGTY 225
Query: 214 IFGER 218
I+ +R
Sbjct: 226 IYNDR 230
>gi|153006329|ref|YP_001380654.1| alanine racemase [Anaeromyxobacter sp. Fw109-5]
gi|152029902|gb|ABS27670.1| alanine racemase [Anaeromyxobacter sp. Fw109-5]
Length = 393
Score = 60.0 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 16/132 (12%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
TV+ A L++ ++ + V++++ TG + + G+ P+ R +L VE
Sbjct: 108 TVASADVAEALAVAAKRRGVPVAVHLELETG--LNRHGLTPDALVALATRLRAMPELRVE 165
Query: 159 GLMC--IPPAMGN---PKPHFYLLSEIARECKL-----TKLSMGMTRDFELAIASGATSV 208
GL G+ + F +L +++ S + D E+A+ V
Sbjct: 166 GLFTHFAAAEEGDQRFTRRQFDVLRDVSARLSWIPERHCAASASLLLDHEMALE----VV 221
Query: 209 RIGSGIFGERPC 220
R G ++G RP
Sbjct: 222 RAGLSMYGYRPA 233
>gi|145219160|ref|YP_001129869.1| alanine racemase [Prosthecochloris vibrioformis DSM 265]
gi|145205324|gb|ABP36367.1| alanine racemase [Chlorobium phaeovibrioides DSM 265]
Length = 368
Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 45/236 (19%), Positives = 82/236 (34%), Gaps = 33/236 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVALSC-GQVIFAENK 57
L + L ++K + V ++ V K D ++ L G F
Sbjct: 11 LQHNLSEIRRK----------TGEGVRIMGVVKANAYGHDVHRVSETLEQNGVTDFGVAN 60
Query: 58 LQEAKKKWI--PLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
+QEA + L+K + L F L S + ++ T+ ++T
Sbjct: 61 IQEAIELQTGRALKKPASI-LAFASPLSSQIPFYLKHGIEM--TLCNKETLFAAESHAAA 117
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPHF 174
+ L V+I+V+TG + G+ P + + Q + V+G+ + G+ +
Sbjct: 118 TGKKLRVHIKVDTGM--GRLGLPPAAAMELLRASEQCPGIEVKGIYTHFADSSGDMEFTR 175
Query: 175 YLLSEIARECKLTKLSMGMTRDFELAIASGA---------TSVRIGSGIFGERPCQ 221
L + + S G A SGA VR G ++G P +
Sbjct: 176 RQLRDFLSLASEYEHSSGKQV-LRHAANSGAILSLPEANLDMVRPGITLYGYHPAK 230
>gi|218658706|ref|ZP_03514636.1| alanine racemase domain protein [Rhizobium etli IE4771]
Length = 28
Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/28 (71%), Positives = 23/28 (82%)
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGER 218
MGM+ D+E AIA GATSVR+GS IFG R
Sbjct: 1 MGMSGDYETAIAFGATSVRVGSAIFGAR 28
>gi|302387296|ref|YP_003823118.1| alanine racemase domain protein [Clostridium saccharolyticum WM1]
gi|302197924|gb|ADL05495.1| alanine racemase domain protein [Clostridium saccharolyticum WM1]
Length = 373
Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/226 (15%), Positives = 85/226 (37%), Gaps = 33/226 (14%)
Query: 12 QKIENSAILAK-RPKDSVSLVAVSKMV--D--SKKIRVALSCGQVIFAENKLQEAKKKWI 66
++++++A A R + + K ++ +A + G K+ EA+
Sbjct: 28 RRMQDAADKAGCRLRPHI------KTHKMPLFAQMQEMAGASGITCA---KVSEAEVMAD 78
Query: 67 PLRKEWDVQLRFIGSLQSNKVSEIVSLFD-VIETVSREKTASLLSLEMIKQSRFLPVYIQ 125
++ + IG + + ++ +I + + A L + L V ++
Sbjct: 79 GGMEDIFIAYPMIGRFRIRRAMDLAERIRRLILAIDSLEGAKALDQAASDRDVVLEVRME 138
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI-------PPAMGN---PKPHFY 175
++TG ++G+ + + + ++ LN+ G+ P N +
Sbjct: 139 IDTG--AGRTGVPMERAVELALAVKEMKHLNLTGIFTFKSLILSGKPTEDNLLAAQEEGN 196
Query: 176 LLSEIARECK-----LTKLSMGMTRDFELAIASG-ATSVRIGSGIF 215
+++E AR K + +S G + L +G +R G+ IF
Sbjct: 197 MMAETARMLKEAGVEIQDISAGSSPTGLLVAQTGLVNEIRPGTYIF 242
>gi|138895645|ref|YP_001126098.1| hypothetical protein GTNG_2001 [Geobacillus thermodenitrificans
NG80-2]
gi|196249582|ref|ZP_03148279.1| alanine racemase domain protein [Geobacillus sp. G11MC16]
gi|134267158|gb|ABO67353.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
gi|196210876|gb|EDY05638.1| alanine racemase domain protein [Geobacillus sp. G11MC16]
Length = 370
Score = 59.7 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/224 (18%), Positives = 82/224 (36%), Gaps = 29/224 (12%)
Query: 14 IENSAILAKRPKDSVSLVAVSKMVDS--KKIRVALSCGQVIFAENKLQEAKKKWIPLRKE 71
I N+ +L K V + V+K V + + + G FA+++LQ K
Sbjct: 15 IHNARVLNAICKHHVEWIPVTKSVGANIEIVDSLYKQGYRKFADSRLQNLKA-IKEYDSS 73
Query: 72 WDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
+ L I + + ++++ D VS K L+ E + Q + + + + G
Sbjct: 74 INTCLLRIPGIHE--IKDVITWADC-SLVSEYKVIEALNQEALSQGKIHHIILMIELG-- 128
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR--------- 182
+ GIMP + D + ++ G+ G P L+++ +
Sbjct: 129 DLREGIMPEELMDIGKHILKFPAIHWLGIGTNLTCFGGVLPTSDKLAQLVQLKESVEKKL 188
Query: 183 ECKLTKLSMG--------MTRDFELAIASGATSVRIGSGIFGER 218
L+ +S G M+ + I +R+G +F R
Sbjct: 189 GYHLSVISGGNSSSLHLLMSGEMPREI----NHLRLGESLFFGR 228
>gi|193216675|ref|YP_001999917.1| alanine racemase-like protein [Mycoplasma arthritidis 158L3-1]
gi|193001998|gb|ACF07213.1| alanine racemase-like protein [Mycoplasma arthritidis 158L3-1]
Length = 352
Score = 59.3 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 39/236 (16%), Positives = 80/236 (33%), Gaps = 44/236 (18%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSK-MVDSKKIRVAL-SCGQVIFAENKLQEAKK 63
FK I+ + + K ++ ++AV+K V +++ G F +++L
Sbjct: 8 NEAKFKNNIKKAIEICK--AKNIEVLAVTKGFVGQRRMAELYYEAGIRYFGDSRL----- 60
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR-----EKTASLLSLEMIKQSR 118
D+ G Q ++ + + ++E +S +K ++
Sbjct: 61 --DNFEVYKDIP----GHKQMLRLPMLEEIPRLVELCDSSLNGDLTIIKAISEYCLKVNK 114
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH----- 173
+ + ++ G ++ GI+P T V + +N+ G+ C G P
Sbjct: 115 VHDIVLMIDMG--DRREGILPEDTLKVVKEILEYRGVNLIGIGCNFGCYGARVPSKETMD 172
Query: 174 -FYLLSEIAR---ECKLTKLS--------MGMTRDFELAIASGATSVRIGSG-IFG 216
F L + KL +S M + +R+G IFG
Sbjct: 173 KFVSLKKAIETTYNLKLKHISGGNSLSLHMVWENTMPTEV----NFLRMGFAMIFG 224
>gi|46446265|ref|YP_007630.1| putative bifunctional
UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
ligase/alanine racemase [Candidatus Protochlamydia
amoebophila UWE25]
gi|46399906|emb|CAF23355.1| putative alanine racemase [Candidatus Protochlamydia amoebophila
UWE25]
Length = 841
Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 41/235 (17%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMV--DSKKIRV---ALSCGQVIFAEN 56
++ N L + + KI ++ L+ + K + I++ + G I +
Sbjct: 474 AIKNNLDMIRTKIT---------PET-RLMIIIKAFAYGTDDIQLGKFLSAYGVDILGVS 523
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
++E R + + I + Q +++++V + VS S L+ E K
Sbjct: 524 YVEEGVA---LKRAGITLPIFTINAAQY-EIAKVVKWELEV-GVSDVNFISALAQEAKKS 578
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK----- 171
S+ + V++ +NTG + G P + + +L L +EG+M +P+
Sbjct: 579 SKCIKVHLHINTGM--GRFGCRPEEALNLALLITSSSHLILEGIMTHFACADDPRHDSFT 636
Query: 172 ----PHF----YLLSEIARECKLTKL--SMGMTRDFELAIASGATSVRIGSGIFG 216
F L + K T S G F L VRIG +G
Sbjct: 637 QEQIQCFDSVIEQLKRHCIQAKWTHAANSSGTI-RFSLPQY---NMVRIGLATYG 687
>gi|220931017|ref|YP_002507925.1| alanine racemase [Halothermothrix orenii H 168]
gi|254802366|sp|B8D0W1|ALR_HALOH RecName: Full=Alanine racemase
gi|219992327|gb|ACL68930.1| alanine racemase [Halothermothrix orenii H 168]
Length = 379
Score = 58.5 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
E++ +D+I TV RE+TA L+ K + V+I+V+TG + G+ P + FV
Sbjct: 95 ELLFKYDLIPTVGREETALSLNRLAAKYNVVKKVHIKVDTGM--GRIGVRPREAVGFVKK 152
Query: 149 CRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAREC--KLTKLSMGM-----TR----- 195
+ +EGLM A K + Y + ++ L KL + + +
Sbjct: 153 VNSLSNIKIEGLMTHFASADERDKSYTYEQWDKFKQVLDGLNKLRIDIPIKHSSNSAAII 212
Query: 196 DFELAIASGATSVRIGSGIFGERPCQ 221
DF+ G VR G ++G +P +
Sbjct: 213 DFK---KFGLDMVRPGIMLYGLKPSR 235
>gi|227819408|ref|YP_002823379.1| metal-activated pyridoxal enzyme [Sinorhizobium fredii NGR234]
gi|227338407|gb|ACP22626.1| metal-activated pyridoxal enzyme [Sinorhizobium fredii NGR234]
Length = 352
Score = 58.5 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 45/125 (36%), Gaps = 10/125 (8%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM-PNQTKDFVILCRQKYQLNVEG 159
LS + L V ++ NTG + + G+ P++ + L G
Sbjct: 109 DNAAVVDGLSDYFSGAQKPLTVLVECNTGAD--RCGVATPDEAAALARRIVEAAGLRFGG 166
Query: 160 LMCIPPAMGNPKPHFYLLSEIARECKLTKL------SMGMTRDFELAIASGATSVRIGSG 213
LM PP + +SE R + L S G + A A AT R G+
Sbjct: 167 LMTYPPVGAAARVQ-SFMSEARRLIEADGLQVPTVTSGGTPSMMQAAEAPVATEYRPGTY 225
Query: 214 IFGER 218
I+ +R
Sbjct: 226 IYNDR 230
>gi|227824623|ref|ZP_03989455.1| alanine racemase [Acidaminococcus sp. D21]
gi|226905122|gb|EEH91040.1| alanine racemase [Acidaminococcus sp. D21]
Length = 381
Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 58/156 (37%), Gaps = 17/156 (10%)
Query: 29 SLVAVSKM-------VDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFI-G 80
+ AV K V AL+ G A + QEA + LR+ + I G
Sbjct: 31 KICAVVKADAYGHGAVPVAT--AALAAGVNYLAVSMTQEALE----LREAGIMAPILILG 84
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
++ +V ++ +TV A LS +++++ V++ V+TG + G P
Sbjct: 85 TMTEEHEKALVDY-NITQTVYDLAVAQELSAAALQENKVAKVHLAVDTGM--NRIGCRPE 141
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ D + + +EG+ + F
Sbjct: 142 EAADLAEAISKLPHVELEGMFSHFASADEMDKSFAE 177
>gi|118581006|ref|YP_902256.1| alanine racemase [Pelobacter propionicus DSM 2379]
gi|118503716|gb|ABL00199.1| alanine racemase [Pelobacter propionicus DSM 2379]
Length = 433
Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/238 (16%), Positives = 75/238 (31%), Gaps = 38/238 (15%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKI-RVALSCGQVIFAEN 56
+L + Q+ + + A L+AV K I R G F
Sbjct: 71 ALRHNFQLIRSSVSPQAE----------LLAVVKADAYGHGFMDISRELERLGVNAFG-- 118
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL-FDVIETVSREKTASLLSLEMIK 115
+ + + D + +G + + + + I V + A L K
Sbjct: 119 -VAFLAEAIQLRKAGIDRPILLLGGVYPGQERKCIGYNISTI--VFNLEQARALDRAAAK 175
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL---MCIPPAMGNPKP 172
R ++++V+TG + GI + F+ +++EG+ +
Sbjct: 176 LFRKAQLHLKVDTGM--GRLGIPYAEVPSFLRELAALPHISLEGVVSHFASADELNESGR 233
Query: 173 HFYLL-SEIARECKLTKLSMGMTRDFELAIAS----------GATSVRIGSGIFGERP 219
+F L +E S G + IA+ G VR G ++G P
Sbjct: 234 YFSRLQAERFAWALAETRSAGFAPRYVH-IANSAAGLLRDIPGCNLVRPGIALYGALP 290
>gi|229017415|ref|ZP_04174318.1| Alanine racemase [Bacillus cereus AH1273]
gi|228743978|gb|EEL94077.1| Alanine racemase [Bacillus cereus AH1273]
Length = 408
Score = 57.7 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 87/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 34 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVA 84
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + V + +G V + + DV+ TV R + ++ +
Sbjct: 85 FVDEAIE---LREAGITVPILILGYTSVAAVEDAIQY-DVMMTVYRIEDLQSINEIANRL 140
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH--- 173
+ V IQV + + G+ + K F+ + + V G+
Sbjct: 141 QK--KVQIQVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADETDKAYTN 198
Query: 174 -----FYLLSEIARECKL---------TKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + + SM ++ F+ VR+G GI+G P
Sbjct: 199 MQTSLFEKAVNTAKELGIHFPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 251
Query: 220 CQ 221
+
Sbjct: 252 SK 253
>gi|254501148|ref|ZP_05113299.1| Alanine racemase, N-terminal domain family [Labrenzia alexandrii
DFL-11]
gi|222437219|gb|EEE43898.1| Alanine racemase, N-terminal domain family [Labrenzia alexandrii
DFL-11]
Length = 351
Score = 57.4 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/153 (22%), Positives = 60/153 (39%), Gaps = 12/153 (7%)
Query: 74 VQLRFIGSLQSNKVSEIVSLFDVIETV--SREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
+ +G+ + ++ + + +V T LS L V ++ +TG E
Sbjct: 82 ITFNILGAEKLERLKALARKVRL--SVVADNTSTVKGLSDAFSDTDSPLTVLVECDTGAE 139
Query: 132 IQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI----ARECKL 186
+ G+ P +D + Q L GLM PPA + H +L A ++
Sbjct: 140 --RCGVTSPEAAQDLAQVINQSPGLTFGGLMTYPPAGREAEVHDWLTKARDMIEADALQV 197
Query: 187 TKLSMGMTRDFELAIASG-ATSVRIGSGIFGER 218
+S G + A A AT RIG+ ++ +R
Sbjct: 198 AVISNGGSPGMWQADAVPVATEYRIGTYVYNDR 230
>gi|288574333|ref|ZP_06392690.1| alanine racemase domain protein [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288570074|gb|EFC91631.1| alanine racemase domain protein [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 370
Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 53/149 (35%), Gaps = 25/149 (16%)
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QT 142
KV I V S+L+ R L V + VNTG ++G+ P +
Sbjct: 99 RRKVRRIAV------AVDHRDHISILNGRFKDSDRPLEVLLDVNTG--DPRTGVAPGPEA 150
Query: 143 KDFVILCRQKYQLNVEGLMC-------------IPPAMGNPKPHFYLLSEIARECKL--T 187
+ L++ G+ + N + L++ R+ +
Sbjct: 151 LELARSVWNSPGLSLRGIYTHDGQSYDVEGWEGVIEVNRNSQQAVIDLAKTIRDNGIFCE 210
Query: 188 KLSMGMTRDFEL-AIASGATSVRIGSGIF 215
++S+G T L I G T +R G+ IF
Sbjct: 211 EVSVGSTPSLLLGEILPGVTEIRPGTYIF 239
>gi|302388874|ref|YP_003824695.1| alanine racemase [Thermosediminibacter oceani DSM 16646]
gi|302199502|gb|ADL07072.1| alanine racemase [Thermosediminibacter oceani DSM 16646]
Length = 384
Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/233 (20%), Positives = 78/233 (33%), Gaps = 39/233 (16%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIRVAL-SCGQVIFAENKLQE 60
L+ +Q E V ++AV K +K + +AL G F + E
Sbjct: 11 NLRALRQNYETIRREVG-----VPVMAVVKGDAYGHGAKDVALALQEAGVEWFG---V-E 61
Query: 61 AKKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
++ + LR+ L G + + DVI T+ A LL+ ++
Sbjct: 62 FLEEAVELREAGIKGRILCLTGPVTREDCEIFIEK-DVIPTIYNLDRADLLNKTAARRGV 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC--IPPAMGNPKPHFYL 176
V+++ +TG + + G + + R L EG P Y
Sbjct: 121 SCRVHLKFDTG--LGRFGFLYEDLDRVIDGLRSFSHLIYEGAYTHFAEAFAKKPDYTLYQ 178
Query: 177 LSEIARECKLTKLSMGMTRDFELAIASGAT-------------SVRIGSGIFG 216
LS R + S ++AI A VRIGS ++G
Sbjct: 179 LSVFQRVLDKLEQS-----GIKVAIRHAANSVAAMDFPEARLDMVRIGSALYG 226
>gi|150376682|ref|YP_001313278.1| alanine racemase domain-containing protein [Sinorhizobium medicae
WSM419]
gi|150031229|gb|ABR63345.1| alanine racemase domain protein [Sinorhizobium medicae WSM419]
Length = 352
Score = 57.0 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 8/111 (7%)
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIM-PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK- 171
+ + V ++ NTG E + G+ P + + L GLM PPA G +
Sbjct: 122 ADAGKPMTVLVECNTGAE--RCGVATPAEAARLAMRIAAAPGLRFGGLMTYPPADGAARV 179
Query: 172 -PHFYLLSEIARECKLT---KLSMGMTRDFELAIASGATSVRIGSGIFGER 218
++ + S G + A A A+ R G+ I+ +R
Sbjct: 180 QTFMSEAKQLIEARGIEVPCVTSGGTPGMMQAAEAPVASEHRPGTYIYNDR 230
>gi|229085084|ref|ZP_04217335.1| Alanine racemase [Bacillus cereus Rock3-44]
gi|228698209|gb|EEL50943.1| Alanine racemase [Bacillus cereus Rock3-44]
Length = 391
Score = 56.6 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/238 (14%), Positives = 75/238 (31%), Gaps = 37/238 (15%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAENKLQE 60
L K + ++++++A K + + + A+ G A + E
Sbjct: 14 NLDAIKHNVREFKKRV--NDENMTMMAAVKANAYGHGAVEVAKAAIEAGVNQLAVAFVDE 71
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ V + +G + + D++ TV R + + + +
Sbjct: 72 GIE---LREAGISVPILILGYTPVEAAKDAIEY-DIMMTVYRIEDLKGIDEVAKRLGKKA 127
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP-------- 172
IQV + + G+ + F+ + + +EG+
Sbjct: 128 R--IQVKIDTGMSRIGLQEEEVAPFLEELKNMKHIEMEGVFTHYSTADEIDKTYTNMQTN 185
Query: 173 HFYLLSEIARECKL---------TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F A+E + + SM ++ F+ VR+G GI+G P Q
Sbjct: 186 LFEKAVTTAKEMGIHLPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYPSQ 236
>gi|304437288|ref|ZP_07397248.1| alanine racemase [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304369780|gb|EFM23445.1| alanine racemase [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 368
Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 22/189 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
+L + + + +I+ A L AV K + RVAL G A
Sbjct: 14 ALAHNYREIRSRIQKGA----------KLCAVVKADAYGHGAIAAARVALDEGADYLA-- 61
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ + + L +G ++ E+V D+ +TV R LS E ++Q
Sbjct: 62 -VATLSEALKLRAAGFTAPLLILGLVEPESAREVVDG-DITQTVCRMDLVEALSQEAVRQ 119
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ + V++ + TG + + G+ P + + +EG+ P F
Sbjct: 120 GKTVKVHLTIETG--MGRIGVHPKDAAETAKKIAALPNVELEGVFSHFALADIPDKTFTK 177
Query: 177 LS-EIAREC 184
++ ++
Sbjct: 178 QQVKLFKDA 186
>gi|52143353|ref|YP_083477.1| alanine racemase [Bacillus cereus E33L]
gi|51976822|gb|AAU18372.1| alanine racemase [Bacillus cereus E33L]
Length = 391
Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 88/242 (36%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 17 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVA 67
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + LR+ I S V+E +DV+ TV R + ++ +
Sbjct: 68 FVDEAIE----LREAGINVPILILGYTSVAVAEEAIQYDVMMTVYRSEDLQGINEIAKRL 123
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ ++ + V G+
Sbjct: 124 QKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTN 181
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM ++ F+ VR+G GI+G P
Sbjct: 182 MQTSLFEKAVNTAKELGIHIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 234
Query: 220 CQ 221
+
Sbjct: 235 SK 236
>gi|269837390|ref|YP_003319618.1| alanine racemase domain-containing protein [Sphaerobacter
thermophilus DSM 20745]
gi|269786653|gb|ACZ38796.1| alanine racemase domain protein [Sphaerobacter thermophilus DSM
20745]
Length = 366
Score = 55.8 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 24/157 (15%)
Query: 85 NKVSEIVSLFDVIE---TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
K+ +++L D I+ V + A+ LS + L V +++NTG + ++G++P +
Sbjct: 91 QKIRRLLALMDRIKVTVAVDGVEGAAALSAACRDAGKTLDVRLEINTGLD--RAGVLPGE 148
Query: 142 -TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--------------- 185
Q L + G+M + L+EIA
Sbjct: 149 PALALAREVMQMPGLRLAGIMTHEGHVAKATNA-DELAEIATAAGKAMVETADLLRSNGI 207
Query: 186 -LTKLSMGMTR-DFELAIASGATSVRIGSGIFGERPC 220
+ +S+G T + G T +R G+ +F +
Sbjct: 208 PVDVVSVGSTPASWYTPTVPGITEMRPGTYVFNDNSA 244
>gi|332982771|ref|YP_004464212.1| alanine racemase [Mahella australiensis 50-1 BON]
gi|332700449|gb|AEE97390.1| alanine racemase [Mahella australiensis 50-1 BON]
Length = 366
Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 42/236 (17%), Positives = 83/236 (35%), Gaps = 44/236 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIRV-ALSCGQVIFAEN 56
++ + L+ ++++ VS++AV K + ++ G F
Sbjct: 12 AIIDNLETVRKEV------------GVSVMAVVKGNAYGHGAVEVSATLADAGVEWFG-- 57
Query: 57 KLQEAKKKWIPLRKEW--DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
+ E + + LR+ L F G + + + D+ + A++L+
Sbjct: 58 -V-EFLDEGVRLRESGIEGRILCFTGPVDKDDCRAFIEY-DITPAMYNLDAAAMLNDVAE 114
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
++ V+++ +TG + G ++ + + L EG A KP +
Sbjct: 115 EEDIMFKVHLKFDTGM--GRFGFTYDELDGVIDRLKAFEHLEYEGAFTHFAAAFAKKPDY 172
Query: 175 YLLS-EIARECKLTKLSMG-------------MTRDFELAIASGATSVRIGSGIFG 216
LL E +C + KL G DF A VR+G +FG
Sbjct: 173 TLLQLERFNKC-MDKLETGGIKVQIRHAANSVAAMDFPQA---RLDMVRVGGALFG 224
>gi|324326142|gb|ADY21402.1| alanine racemase [Bacillus thuringiensis serovar finitimus YBT-020]
Length = 408
Score = 55.4 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 87/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 34 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVA 84
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + LR+ I S +E +DV+ TV R + ++ +
Sbjct: 85 FVDEAIE----LREAGINVPILILGYTSVAAAEDAIQYDVMMTVYRSEDLQGINEIANRL 140
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ ++ + V G+
Sbjct: 141 QKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTN 198
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM ++ F+ VR+G GI+G P
Sbjct: 199 MQTSLFEKAVNTAKELGIHIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 251
Query: 220 CQ 221
+
Sbjct: 252 SK 253
>gi|302674954|ref|XP_003027161.1| hypothetical protein SCHCODRAFT_61194 [Schizophyllum commune H4-8]
gi|300100847|gb|EFI92258.1| hypothetical protein SCHCODRAFT_61194 [Schizophyllum commune H4-8]
Length = 158
Score = 55.4 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 15/130 (11%)
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSL---EMIKQSRFLPV 122
+R +++ FIG Q +K +V I+ ++ K A LL E +R +
Sbjct: 3 IRLPAEIRWYFIGPRQLDKSKTLVAIPNLHTIQALTLTKAADLLHKALSEAGDATRLPII 62
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-------PAMGNPKPHFY 175
+ + Q L ++GLM I G F
Sbjct: 63 CL---IPLISTNFTTTHPLAIFAAHILEQCPFLRLQGLMTIGSIEPSYHAKEGEENHDFK 119
Query: 176 LLSEIARECK 185
+L +
Sbjct: 120 MLLNTRDSLQ 129
>gi|188585830|ref|YP_001917375.1| alanine racemase domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350517|gb|ACB84787.1| alanine racemase domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 360
Score = 55.4 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 48/245 (19%), Positives = 97/245 (39%), Gaps = 53/245 (21%)
Query: 1 MSLGN-KLQVFKQKIE--------NSAILAKRPKDSVSLVAVSKMVDSK-KIRVAL-SCG 49
M + + +++++ +I +A +++SLV V+K V + +I A G
Sbjct: 1 MEIRSPRVEIYADRIAYNVEYLQKQAAK------NNISLVGVTKGVLADHQILDAYLKGG 54
Query: 50 QVIFAENKLQEAKK--------KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVS 101
+ ++Q K+ K + LR + +S++++ +V +++
Sbjct: 55 LDYLGDARIQNLKRVRDYGFSGKTLLLRAPMYSE-----------ISQVINFANV--SLN 101
Query: 102 R-EKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
T LL E KQ + I V+ G ++ G++P K FV + + EGL
Sbjct: 102 SELDTLKLLDEESKKQGKTHGYIIMVDVG--DRREGVLPEDVKSFVKEAIKLENVKFEGL 159
Query: 161 -------MCIPPAMGNPKPHFYLLSEIARE-CKLTKLS----MGMTRDFELAIASGATSV 208
+ P N + L SE+ +E ++ +S G+ F + G +
Sbjct: 160 GLNVGCFGGVLPTTENAQILIDLKSELEQEGIEVPTISGGSTCGLNIMFHNQLPEGINQL 219
Query: 209 RIGSG 213
R+G
Sbjct: 220 RVGEA 224
>gi|255659976|ref|ZP_05405385.1| alanine racemase [Mitsuokella multacida DSM 20544]
gi|260847728|gb|EEX67735.1| alanine racemase [Mitsuokella multacida DSM 20544]
Length = 369
Score = 55.0 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/166 (19%), Positives = 64/166 (38%), Gaps = 21/166 (12%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKI-RVALSCGQVIFAEN 56
+L + + K+ I + L AV K + + RVA+ G A
Sbjct: 14 ALRHNYEEIKKNI----------RGGAKLCAVVKADAYGHGALAVARVAVEAGASYLA-- 61
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ + + V + +G + ++ +IV DV + V A +S E ++Q
Sbjct: 62 -VATLGEAIELREAGFTVPILLLGLVLPDEARDIVDY-DVTQVVCELPLAEAISREAVRQ 119
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC 162
+ V+++V TG + GI P + +Q + +EG+
Sbjct: 120 HKTAKVHLKVETGM--GRIGIRPEEIGALAAAVKQLPNIEIEGMFS 163
>gi|206975085|ref|ZP_03235999.1| alanine racemase [Bacillus cereus H3081.97]
gi|217959579|ref|YP_002338131.1| alanine racemase [Bacillus cereus AH187]
gi|222095721|ref|YP_002529778.1| alanine racemase [Bacillus cereus Q1]
gi|206746506|gb|EDZ57899.1| alanine racemase [Bacillus cereus H3081.97]
gi|217065584|gb|ACJ79834.1| alanine racemase [Bacillus cereus AH187]
gi|221239779|gb|ACM12489.1| alanine racemase [Bacillus cereus Q1]
Length = 391
Score = 55.0 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 86/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 17 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVA 67
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + +V + +G E + DV+ TV R + ++ +
Sbjct: 68 FVDEAIE---LREAGINVPILILGYTSVASAEEAIQY-DVMMTVYRSEDLQGINEIANRL 123
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ ++ + V G+
Sbjct: 124 QKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTN 181
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM ++ F+ VR+G GI+G P
Sbjct: 182 MQTSLFEKAVNTAKELGIHIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 234
Query: 220 CQ 221
+
Sbjct: 235 SK 236
>gi|49481282|ref|YP_036225.1| alanine racemase [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|49332838|gb|AAT63484.1| alanine racemase [Bacillus thuringiensis serovar konkukian str.
97-27]
Length = 391
Score = 55.0 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 86/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 17 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVA 67
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + +V + +G E + DV+ TV R + ++ +
Sbjct: 68 FVDEAIE---LREAGINVPILILGYTSVASAEEAIQY-DVMMTVYRSEDLQGINEIANRL 123
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ ++ + V G+
Sbjct: 124 QKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTN 181
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM ++ F+ VR+G GI+G P
Sbjct: 182 MQTSLFEKAVNTAKELGIHIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 234
Query: 220 CQ 221
+
Sbjct: 235 SK 236
>gi|229196342|ref|ZP_04323090.1| Alanine racemase [Bacillus cereus m1293]
gi|228587196|gb|EEK45266.1| Alanine racemase [Bacillus cereus m1293]
Length = 408
Score = 55.0 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 86/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 34 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVA 84
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + +V + +G E + DV+ TV R + ++ +
Sbjct: 85 FVDEAIE---LREAGINVPILILGYTSVASAEEAIQY-DVMMTVYRSEDLQGINEIANRL 140
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ ++ + V G+
Sbjct: 141 QKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVIGMFTHYSTADEIDKSYTN 198
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM ++ F+ VR+G GI+G P
Sbjct: 199 MQTSLFEKAVNTAKELGIHIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 251
Query: 220 CQ 221
+
Sbjct: 252 SK 253
>gi|221633166|ref|YP_002522391.1| Alanine racemase, N-terminal domain family [Thermomicrobium roseum
DSM 5159]
gi|221156807|gb|ACM05934.1| Alanine racemase, N-terminal domain family [Thermomicrobium roseum
DSM 5159]
Length = 370
Score = 55.0 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 25/147 (17%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVI 147
+ V V A LS + + L V I+V+TG ++++G+ P +
Sbjct: 101 RLAERVRVTVAVDSVAVAEPLSRAALARGEQLDVVIEVDTG--LRRAGVEPGEPVLRLAR 158
Query: 148 LCRQKYQLNVEGLMCIPPAMG--NPKPHFYLLSEIARE-------------CKLTKLSMG 192
+ L + GLM G + L+ +A E + +S+G
Sbjct: 159 EIIEMPGLRLRGLMTHEGHAGRASTTEELEGLARMAGEAMVASAELLRREGIPVDVVSVG 218
Query: 193 MTRDFELAIAS----GATSVRIGSGIF 215
T A A+ G T +R G+ +F
Sbjct: 219 STP---AAFATTRVPGITEMRPGTYVF 242
>gi|196039765|ref|ZP_03107069.1| alanine racemase [Bacillus cereus NVH0597-99]
gi|196029468|gb|EDX68071.1| alanine racemase [Bacillus cereus NVH0597-99]
Length = 391
Score = 55.0 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 87/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 17 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVA 67
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + LR+ I S +E +DV+ TV R + ++ +
Sbjct: 68 FVDEAIE----LREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRL 123
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ ++ + V G+
Sbjct: 124 QKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTN 181
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM ++ F+ VR+G GI+G P
Sbjct: 182 MQTSLFEKAVNTAKELGIHIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 234
Query: 220 CQ 221
+
Sbjct: 235 SK 236
>gi|42781229|ref|NP_978476.1| alanine racemase [Bacillus cereus ATCC 10987]
gi|42737151|gb|AAS41084.1| alanine racemase [Bacillus cereus ATCC 10987]
Length = 391
Score = 55.0 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 87/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 17 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVA 67
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + LR+ I S +E +DV+ TV R + ++ +
Sbjct: 68 FVDEAIE----LREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRL 123
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ ++ + V G+
Sbjct: 124 QKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTN 181
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM ++ F+ VR+G GI+G P
Sbjct: 182 MQTSLFEKAVNAAKELGIHIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 234
Query: 220 CQ 221
+
Sbjct: 235 SK 236
>gi|30262102|ref|NP_844479.1| alanine racemase [Bacillus anthracis str. Ames]
gi|47527372|ref|YP_018721.1| alanine racemase [Bacillus anthracis str. 'Ames Ancestor']
gi|49184943|ref|YP_028195.1| alanine racemase [Bacillus anthracis str. Sterne]
gi|165870205|ref|ZP_02214861.1| alanine racemase [Bacillus anthracis str. A0488]
gi|167633047|ref|ZP_02391373.1| alanine racemase [Bacillus anthracis str. A0442]
gi|167638340|ref|ZP_02396617.1| alanine racemase [Bacillus anthracis str. A0193]
gi|170686461|ref|ZP_02877682.1| alanine racemase [Bacillus anthracis str. A0465]
gi|170706003|ref|ZP_02896465.1| alanine racemase [Bacillus anthracis str. A0389]
gi|177650850|ref|ZP_02933747.1| alanine racemase [Bacillus anthracis str. A0174]
gi|190568000|ref|ZP_03020911.1| alanine racemase [Bacillus anthracis Tsiankovskii-I]
gi|227815101|ref|YP_002815110.1| alanine racemase [Bacillus anthracis str. CDC 684]
gi|229604370|ref|YP_002866463.1| alanine racemase [Bacillus anthracis str. A0248]
gi|254684669|ref|ZP_05148529.1| alanine racemase [Bacillus anthracis str. CNEVA-9066]
gi|254737113|ref|ZP_05194817.1| alanine racemase [Bacillus anthracis str. Western North America
USA6153]
gi|254743702|ref|ZP_05201387.1| alanine racemase [Bacillus anthracis str. Kruger B]
gi|30256728|gb|AAP25965.1| alanine racemase [Bacillus anthracis str. Ames]
gi|47502520|gb|AAT31196.1| alanine racemase [Bacillus anthracis str. 'Ames Ancestor']
gi|49178870|gb|AAT54246.1| alanine racemase [Bacillus anthracis str. Sterne]
gi|164714093|gb|EDR19614.1| alanine racemase [Bacillus anthracis str. A0488]
gi|167513641|gb|EDR89010.1| alanine racemase [Bacillus anthracis str. A0193]
gi|167531859|gb|EDR94524.1| alanine racemase [Bacillus anthracis str. A0442]
gi|170129005|gb|EDS97870.1| alanine racemase [Bacillus anthracis str. A0389]
gi|170669537|gb|EDT20279.1| alanine racemase [Bacillus anthracis str. A0465]
gi|172083311|gb|EDT68372.1| alanine racemase [Bacillus anthracis str. A0174]
gi|190561055|gb|EDV15029.1| alanine racemase [Bacillus anthracis Tsiankovskii-I]
gi|227006748|gb|ACP16491.1| alanine racemase [Bacillus anthracis str. CDC 684]
gi|229268778|gb|ACQ50415.1| alanine racemase [Bacillus anthracis str. A0248]
Length = 391
Score = 55.0 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 86/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 17 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIA 67
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + LR+ I S +E +DV+ TV R + ++ +
Sbjct: 68 FVDEAIE----LREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRL 123
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ ++ + V G+
Sbjct: 124 QKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTN 181
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM + F+ VR+G GI+G P
Sbjct: 182 MQTSLFEKAVNTAKELGIHIPYIHSSNSAGSMEPSNTFQ-------NMVRVGIGIYGMYP 234
Query: 220 CQ 221
+
Sbjct: 235 SK 236
>gi|301053620|ref|YP_003791831.1| alanine racemase [Bacillus anthracis CI]
gi|300375789|gb|ADK04693.1| alanine racemase [Bacillus cereus biovar anthracis str. CI]
Length = 408
Score = 55.0 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 87/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 34 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVA 84
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + LR+ I S +E +DV+ TV R + ++ +
Sbjct: 85 FVDEAIE----LREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRL 140
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ ++ + V G+
Sbjct: 141 QKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTN 198
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM ++ F+ VR+G GI+G P
Sbjct: 199 MQTSLFEKAVNTAKELGIHIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 251
Query: 220 CQ 221
+
Sbjct: 252 SK 253
>gi|228933402|ref|ZP_04096256.1| Alanine racemase [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|229138804|ref|ZP_04267385.1| Alanine racemase [Bacillus cereus BDRD-ST26]
gi|228644720|gb|EEL00971.1| Alanine racemase [Bacillus cereus BDRD-ST26]
gi|228826266|gb|EEM72045.1| Alanine racemase [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
Length = 408
Score = 55.0 bits (132), Expect = 8e-06, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 86/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 34 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVA 84
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + +V + +G E + DV+ TV R + ++ +
Sbjct: 85 FVDEAIE---LREAGINVPILILGYTSVASAEEAIQY-DVMMTVYRSEDLQGINEIANRL 140
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ ++ + V G+
Sbjct: 141 QKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTN 198
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM ++ F+ VR+G GI+G P
Sbjct: 199 MQTSLFEKAVNTAKELGIHIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 251
Query: 220 CQ 221
+
Sbjct: 252 SK 253
>gi|196046083|ref|ZP_03113311.1| alanine racemase [Bacillus cereus 03BB108]
gi|225864057|ref|YP_002749435.1| alanine racemase [Bacillus cereus 03BB102]
gi|196023138|gb|EDX61817.1| alanine racemase [Bacillus cereus 03BB108]
gi|225790862|gb|ACO31079.1| alanine racemase [Bacillus cereus 03BB102]
Length = 391
Score = 54.7 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 87/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 17 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIA 67
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + LR+ I S +E +DV+ TV R + ++ +
Sbjct: 68 FVDEAIE----LREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRL 123
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ ++ + V G+
Sbjct: 124 QKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTN 181
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM ++ F+ VR+G GI+G P
Sbjct: 182 MQTSLFEKAVNTAKELGIHIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 234
Query: 220 CQ 221
+
Sbjct: 235 SK 236
>gi|47566849|ref|ZP_00237567.1| alanine racemase [Bacillus cereus G9241]
gi|47556478|gb|EAL14811.1| alanine racemase [Bacillus cereus G9241]
Length = 391
Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 86/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 17 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVA 67
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + LR+ I S +E +DV+ TV R + ++ +
Sbjct: 68 FVDEAIE----LREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRL 123
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ + + V G+
Sbjct: 124 QKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTN 181
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM ++ F+ VR+G GI+G P
Sbjct: 182 MQTSLFEKAVNTAKELGIHIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 234
Query: 220 CQ 221
+
Sbjct: 235 SK 236
>gi|65319386|ref|ZP_00392345.1| COG0787: Alanine racemase [Bacillus anthracis str. A2012]
Length = 408
Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 86/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 34 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIA 84
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + LR+ I S +E +DV+ TV R + ++ +
Sbjct: 85 FVDEAIE----LREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRL 140
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ ++ + V G+
Sbjct: 141 XKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTN 198
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM + F+ VR+G GI+G P
Sbjct: 199 MQTSLFEKAVNTAKELGIHIPYIHSSNSAGSMEPSNTFQ-------NMVRVGIGIYGMYP 251
Query: 220 CQ 221
+
Sbjct: 252 SK 253
>gi|254751429|ref|ZP_05203466.1| alanine racemase [Bacillus anthracis str. Vollum]
gi|254758301|ref|ZP_05210328.1| alanine racemase [Bacillus anthracis str. Australia 94]
Length = 408
Score = 54.7 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 86/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 34 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIA 84
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + LR+ I S +E +DV+ TV R + ++ +
Sbjct: 85 FVDEAIE----LREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRL 140
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ ++ + V G+
Sbjct: 141 QKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTN 198
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM + F+ VR+G GI+G P
Sbjct: 199 MQTSLFEKAVNTAKELGIHIPYIHSSNSAGSMEPSNTFQ-------NMVRVGIGIYGMYP 251
Query: 220 CQ 221
+
Sbjct: 252 SK 253
>gi|118477525|ref|YP_894676.1| alanine racemase [Bacillus thuringiensis str. Al Hakam]
gi|228927166|ref|ZP_04090229.1| Alanine racemase [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
gi|229091092|ref|ZP_04222315.1| Alanine racemase [Bacillus cereus Rock3-42]
gi|229121649|ref|ZP_04250874.1| Alanine racemase [Bacillus cereus 95/8201]
gi|229184316|ref|ZP_04311523.1| Alanine racemase [Bacillus cereus BGSC 6E1]
gi|254720986|ref|ZP_05182777.1| alanine racemase [Bacillus anthracis str. A1055]
gi|300118202|ref|ZP_07055950.1| alanine racemase [Bacillus cereus SJ1]
gi|118416750|gb|ABK85169.1| alanine racemase [Bacillus thuringiensis str. Al Hakam]
gi|228599112|gb|EEK56725.1| Alanine racemase [Bacillus cereus BGSC 6E1]
gi|228661869|gb|EEL17484.1| Alanine racemase [Bacillus cereus 95/8201]
gi|228692223|gb|EEL45959.1| Alanine racemase [Bacillus cereus Rock3-42]
gi|228832492|gb|EEM78066.1| Alanine racemase [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
gi|298724513|gb|EFI65207.1| alanine racemase [Bacillus cereus SJ1]
Length = 408
Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 87/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 34 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIA 84
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + LR+ I S +E +DV+ TV R + ++ +
Sbjct: 85 FVDEAIE----LREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRL 140
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ ++ + V G+
Sbjct: 141 QKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTN 198
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM ++ F+ VR+G GI+G P
Sbjct: 199 MQTSLFEKAVNTAKELGIHIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 251
Query: 220 CQ 221
+
Sbjct: 252 SK 253
>gi|148255000|ref|YP_001239585.1| putative amino acid processing enzyme-like protein [Bradyrhizobium
sp. BTAi1]
gi|146407173|gb|ABQ35679.1| putative amino acid processing enzyme-related protein (aldolase or
racemase) [Bradyrhizobium sp. BTAi1]
Length = 359
Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/229 (16%), Positives = 76/229 (33%), Gaps = 30/229 (13%)
Query: 5 NKLQVFKQKIENSAILAK---RPKDSVSLVAVSKMV-DSKKIRVALSCG-----QVIFAE 55
++++ +I+ A RP K + ++ ++ G E
Sbjct: 23 DRVERNIARIQAQCAAAGVANRPHI--------KTHKSPELAKLQIAAGAQGITCQKIGE 74
Query: 56 NKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
A+ + IG + +++ + + D+ + L +
Sbjct: 75 -----AEIMAEAGIDNVLISYNLIGEEKMARLAALQAKADMTVAADNPVVVAGLPEAAKQ 129
Query: 116 QSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-NPKPH 173
R L V ++ +TG +++G+ P + + L G M P G +
Sbjct: 130 SGRTLSVVVECDTGR--KRAGVETPAEAIQLARQIKVSEGLRFAGFMLYPTETGWDEAQR 187
Query: 174 F---YLLSEIARECKLTKLSMGMTRDFE-LAIASGATSVRIGSGIFGER 218
F L A +S G + + + L GAT R G+ I+ +R
Sbjct: 188 FFDEALAGVRAEGLDAAIVSTGGSPNLKNLGKLKGATEHRPGTYIYNDR 236
>gi|268316557|ref|YP_003290276.1| alanine racemase [Rhodothermus marinus DSM 4252]
gi|262334091|gb|ACY47888.1| alanine racemase [Rhodothermus marinus DSM 4252]
Length = 382
Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/248 (16%), Positives = 78/248 (31%), Gaps = 62/248 (25%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK-------MVDSKKIRVALSCGQVIFAE 55
L + L+ ++++ + +AV K +V R G FA
Sbjct: 14 LRHNLEQVRRRLGPAEP-----------IAVVKADAYGHGLVPVA--RTLQEAGIRHFAV 60
Query: 56 NKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
+L EA + + +G+ ++ V+ + TVS A + +
Sbjct: 61 ARLSEAVE-LREAGITGSIL--LLGAAFPEDLAACVAHEVEV-TVSSPLLAEAVCAAAPR 116
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF- 174
L V+++V+TG + GI P + + + Q + + GL P F
Sbjct: 117 YG-PLRVHVKVDTGM--GRLGIWPEEAPEIIRRLEQTPGVTLVGLCTHLATAEQPGDPFV 173
Query: 175 ----YLLSEIARECKLTKLSMGMTRDFELAIASGAT-----------------SVRIGSG 213
++ R+ A+ A RIG+
Sbjct: 174 QEQLERFEQLWRQVGDA-----------FAVRHVANSGALFTLPSSYWSDSRQQARIGAA 222
Query: 214 IFG--ERP 219
++G RP
Sbjct: 223 LYGYLPRP 230
>gi|332763637|gb|EGJ93876.1| alanine racemase, N-terminal domain protein [Shigella flexneri
2930-71]
Length = 356
Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V I TV A +S +K R PV ++V + +
Sbjct: 72 GHLVQIPCHQVADAVEQGTDIITVFTLDKAREVSAAAVKAGRVQPVLLKVYSDDDFLYPG 131
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + + ++ L++ GL P + + P P+ + L + +
Sbjct: 132 QESGFVQHSLHEVIAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLA 191
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L GAT G + G P
Sbjct: 192 KSGIAIEQLNVPSATSCTSLPLLAEYGATHAEPGHALTGTIPA 234
>gi|332750374|gb|EGJ80785.1| alanine racemase, N-terminal domain protein [Shigella flexneri
4343-70]
Length = 382
Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V I TV A +S +K R PV ++V + +
Sbjct: 98 GHLVQIPCHQVADAVEQGTDIITVFTLDKAREVSAAAVKAGRVQPVLLKVYSDDDFLYPG 157
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + + ++ L++ GL P + + P P+ + L + +
Sbjct: 158 QESGFVQHSLHEVIAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLA 217
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L GAT G + G P
Sbjct: 218 KSGIAIEQLNVPSATSCTSLPLLAEYGATHAEPGHALTGTIPA 260
>gi|266619447|ref|ZP_06112382.1| alanine racemase domain protein [Clostridium hathewayi DSM 13479]
gi|288869010|gb|EFD01309.1| alanine racemase domain protein [Clostridium hathewayi DSM 13479]
Length = 371
Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/225 (16%), Positives = 81/225 (36%), Gaps = 33/225 (14%)
Query: 13 KIENSAILAK-RPKDSVSLVAVSKMV--DS-KKIRVAL-SCGQVIFAENKLQEAKKKWIP 67
+++ A A R + + K ++++A + G K+ EA+
Sbjct: 27 RMQAEADAAGCRLRPHI------KTHKMPLFARMQLAHGAAGITCA---KVSEAEVMADG 77
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVS-LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ + +G + + + L +I V + A L+ L V ++V
Sbjct: 78 GADDIFIAYPMVGGFRIKRAVALARRLKRLILAVDSMECAVPLNEAAKAAGITLEVRLEV 137
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP----------HFYL 176
+TG +++G+ + + Q LN+ G+ + + KP +
Sbjct: 138 DTG--AKRTGVQRTKAAELAKEVHQLSNLNLTGIYTFKSLVYHDKPTEDKVIAGAEEGDM 195
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGA-TSVRIGSGIF 215
+ IA E + + ++S G T +G +R G+ IF
Sbjct: 196 MEAIADEIRKAGVPIAEISAGSTPTGVEVAKTGKVDEIRPGTYIF 240
>gi|332996432|gb|EGK16059.1| alanine racemase, N-terminal domain protein [Shigella flexneri
VA-6]
Length = 387
Score = 54.7 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V I TV A +S +K R PV ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDIITVFTLDKAREVSAAAVKAGRVQPVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + + ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVIAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L GAT G + G P
Sbjct: 223 KSGIAIEQLNVPSATSCTSLPLLAEYGATHAEPGHALTGTIPA 265
>gi|228914698|ref|ZP_04078307.1| Alanine racemase [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|228845017|gb|EEM90059.1| Alanine racemase [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
Length = 408
Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 87/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 34 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAIA 84
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + LR+ I S +E +DV+ TV R + ++ +
Sbjct: 85 FVDEAIE----LREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRL 140
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ ++ + V G+
Sbjct: 141 QKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTN 198
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM ++ F+ VR+G GI+G P
Sbjct: 199 MQTSLFEKAVNTAKELGIHIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 251
Query: 220 CQ 221
+
Sbjct: 252 SK 253
>gi|269792742|ref|YP_003317646.1| alanine racemase [Thermanaerovibrio acidaminovorans DSM 6589]
gi|269100377|gb|ACZ19364.1| alanine racemase [Thermanaerovibrio acidaminovorans DSM 6589]
Length = 380
Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 50/139 (35%), Gaps = 20/139 (14%)
Query: 95 DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ 154
DV V + A LS E +Q R + V+I+V+TG + G +P + + +
Sbjct: 97 DVTCAVGSLELARALSAEAERQGRQVKVHIKVDTGM--GRIGFLPGELEAAMDQILSMRH 154
Query: 155 LNVEGLMCIPPAMGNPK-----PHFYLLSEIARECKLTKLSMGMTRDFELAIASGATS-- 207
L+VEG+ + + + G+ A S AT
Sbjct: 155 LDVEGIFTHFATADEARLDHAEEQLRRFGDALDRMRC----RGVRFRLRHACNSAATIRM 210
Query: 208 -------VRIGSGIFGERP 219
VR G ++G RP
Sbjct: 211 PHGHLDAVRPGIILYGMRP 229
>gi|24114644|ref|NP_709154.1| hypothetical protein SF3399 [Shigella flexneri 2a str. 301]
gi|30065335|ref|NP_839506.1| hypothetical protein S4363 [Shigella flexneri 2a str. 2457T]
gi|110807213|ref|YP_690733.1| hypothetical protein SFV_3386 [Shigella flexneri 5 str. 8401]
gi|24053848|gb|AAN44861.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30043597|gb|AAP19317.1| hypothetical protein S4363 [Shigella flexneri 2a str. 2457T]
gi|110616761|gb|ABF05428.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|281602729|gb|ADA75713.1| Alanine racemase domain protein [Shigella flexneri 2002017]
gi|313647323|gb|EFS11775.1| alanine racemase domain protein [Shigella flexneri 2a str. 2457T]
gi|332749522|gb|EGJ79939.1| alanine racemase, N-terminal domain protein [Shigella flexneri
K-671]
gi|332750852|gb|EGJ81259.1| alanine racemase, N-terminal domain protein [Shigella flexneri
2747-71]
gi|332997407|gb|EGK17023.1| alanine racemase, N-terminal domain protein [Shigella flexneri
K-218]
gi|333012350|gb|EGK31731.1| alanine racemase, N-terminal domain protein [Shigella flexneri
K-304]
Length = 387
Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V I TV A +S +K R PV ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDIITVFTLDKAREVSAAAVKAGRVQPVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + + ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVIAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L GAT G + G P
Sbjct: 223 KSGIAIEQLNVPSATSCTSLPLLAEYGATHAEPGHALTGTIPA 265
>gi|239834177|ref|ZP_04682505.1| alanine racemase domain-containing protein [Ochrobactrum
intermedium LMG 3301]
gi|239822240|gb|EEQ93809.1| alanine racemase domain-containing protein [Ochrobactrum
intermedium LMG 3301]
Length = 354
Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 16/130 (12%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNV 157
TV + + L+ + L V ++ +TG + G+ P + + + Q L
Sbjct: 110 TVDNSTSLAGLAARFADEKHPLKVLVECDTGM--GRCGVQTPAEALELARIIDQSAGLGF 167
Query: 158 EGLMCIPPAM--GNPKPHFYLLSEIARECKLT--KLSMGMTRDF-----ELAIASGATSV 208
GLM P A + Y E+ L+ +S G T D + + T
Sbjct: 168 GGLMTYPAAGKPDQAEQWLYSARELLDANGLSCETISSGGTPDMWRKPSDSVV----TEY 223
Query: 209 RIGSGIFGER 218
R G+ I+ +R
Sbjct: 224 RPGTYIYFDR 233
>gi|196036671|ref|ZP_03104064.1| alanine racemase [Bacillus cereus W]
gi|195990740|gb|EDX54715.1| alanine racemase [Bacillus cereus W]
Length = 391
Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 86/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 17 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVA 67
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + +V + +G E + DV+ TV R + ++ +
Sbjct: 68 FVDEAIE---LREAGINVPILILGYTSVAATEEAIQY-DVMMTVYRSEDLQGINEIANRL 123
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ ++ + V G+
Sbjct: 124 QKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTN 181
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM ++ F+ VR+G GI+G P
Sbjct: 182 MQTSLFEKAVNTAKELGIHIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 234
Query: 220 CQ 221
+
Sbjct: 235 SK 236
>gi|229029807|ref|ZP_04185878.1| Alanine racemase [Bacillus cereus AH1271]
gi|228731522|gb|EEL82433.1| Alanine racemase [Bacillus cereus AH1271]
Length = 408
Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 86/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 34 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVA 84
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + LR+ I S +E +DV+ TV R + ++ +
Sbjct: 85 FVDEAIE----LREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRL 140
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ + + V G+
Sbjct: 141 QKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELNRMEYIEVVGMFTHYSTADEIDKSYTN 198
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM ++ F+ VR+G GI+G P
Sbjct: 199 MQTSLFEKAVNAAKELGIHIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 251
Query: 220 CQ 221
+
Sbjct: 252 SK 253
>gi|332996676|gb|EGK16301.1| alanine racemase, N-terminal domain protein [Shigella flexneri
K-272]
gi|333013083|gb|EGK32459.1| alanine racemase, N-terminal domain protein [Shigella flexneri
K-227]
Length = 387
Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/163 (20%), Positives = 61/163 (37%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V I TV A +S +K R PV ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDIITVFTLDKAREVSAAAVKAGRVQPVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + + ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVIAEIKKLPGLHLAGLTHFPCLLWDEAAEKVLPTPNLHTLVQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L GAT G + G P
Sbjct: 223 KSGIAIEQLNVPSATSCTSLPLLAEYGATHAEPGHALTGTIPA 265
>gi|260462695|ref|ZP_05810901.1| hypothetical protein MesopDRAFT_3548 [Mesorhizobium opportunistum
WSM2075]
gi|259031601|gb|EEW32871.1| hypothetical protein MesopDRAFT_3548 [Mesorhizobium opportunistum
WSM2075]
Length = 111
Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIAREC 184
E K G+ PN FV Q +L GLM + + +P F LL + +
Sbjct: 53 SGEDSKFGLHPNALLPFVETLDQLPRLRPCGLMTLALFSSDTAKVRPCFILLRRLRDKP 111
>gi|228952487|ref|ZP_04114567.1| Alanine racemase [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|229069638|ref|ZP_04202925.1| Alanine racemase [Bacillus cereus F65185]
gi|229150330|ref|ZP_04278548.1| Alanine racemase [Bacillus cereus m1550]
gi|229178496|ref|ZP_04305862.1| Alanine racemase [Bacillus cereus 172560W]
gi|228605004|gb|EEK62459.1| Alanine racemase [Bacillus cereus 172560W]
gi|228633139|gb|EEK89750.1| Alanine racemase [Bacillus cereus m1550]
gi|228713478|gb|EEL65366.1| Alanine racemase [Bacillus cereus F65185]
gi|228807182|gb|EEM53721.1| Alanine racemase [Bacillus thuringiensis serovar kurstaki str.
T03a001]
Length = 408
Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 37/237 (15%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAENKLQEA 61
L K ++ + + ++A K + + + A+ G A + EA
Sbjct: 32 LNAVKHNVKEFKKHV--NDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVDEA 89
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ V + +G V +++ DV+ TV R + ++ + +
Sbjct: 90 IE---LREAGITVPILILGYTPVAAVEDVIQY-DVMMTVYRVEDLHGINEIANRLQK--K 143
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--------H 173
V IQV + + G+ + K F+ + + V G+
Sbjct: 144 VQIQVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTNMQTSL 203
Query: 174 FYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F A+E + SM ++ F+ VR+G G++G P +
Sbjct: 204 FEKAVNTAKELGIQIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGVYGMYPSK 253
>gi|228945715|ref|ZP_04108062.1| Alanine racemase [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228813936|gb|EEM60210.1| Alanine racemase [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
Length = 408
Score = 54.3 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 86/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 34 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVA 84
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + +V + +G E + DV+ TV R + ++ +
Sbjct: 85 FVDEAIE---LREAGINVPILILGYTSVAATEEAIQY-DVMMTVYRSEDLQGINEIANRL 140
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ ++ + V G+
Sbjct: 141 QKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTN 198
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM ++ F+ VR+G GI+G P
Sbjct: 199 MQTSLFEKAVNTAKELGIHIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 251
Query: 220 CQ 221
+
Sbjct: 252 SK 253
>gi|268590616|ref|ZP_06124837.1| putative amino acid processing protein [Providencia rettgeri DSM
1131]
gi|291314008|gb|EFE54461.1| putative amino acid processing protein [Providencia rettgeri DSM
1131]
Length = 355
Score = 53.9 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 24/159 (15%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
IG + + E+ + + + A LS ++++ + VYI V+ G + GI
Sbjct: 81 MIGEQKCQQFIELAKKIKLRTIIDSLQGAEQLSAAAKQENQIIEVYIAVDYG--AHREGI 138
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDF 197
+ + F + ++ L + G+ + + + E L LS
Sbjct: 139 QLDDLEPFALAIQKLPNLKIIGVFTYAGTIYQYRTEPEIRKAAKAEADLL-LS--CQERL 195
Query: 198 E-LAIAS------------------GATSVRIGSGIFGE 217
E L I + G T R G+ IFG+
Sbjct: 196 EKLGITAPRTSGGSTLSSFYADELKGITESRAGNFIFGD 234
>gi|228991111|ref|ZP_04151071.1| Alanine racemase [Bacillus pseudomycoides DSM 12442]
gi|228768647|gb|EEM17250.1| Alanine racemase [Bacillus pseudomycoides DSM 12442]
Length = 391
Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/238 (14%), Positives = 77/238 (32%), Gaps = 37/238 (15%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAENKLQE 60
L K + +++++A K + + + A+ G A + E
Sbjct: 14 NLDAVKHNVREFKKRV--NDKNIAMMAAVKANGYGHGAVEVAKAAIEAGVNQLAVAFVDE 71
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ V + +G + + + D++ TV R + ++ + +
Sbjct: 72 GIE---LREAGVTVPILVLGYTPVDVAKDAIGY-DIMMTVYRIEDLKGINEIAKQLEK-- 125
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP-------- 172
+IQV + + G+ + F+ + + +EG+
Sbjct: 126 KAHIQVKIDTGMSRIGLQEEEVAPFLEELKNMKYIEIEGMFTHYSTADEINKTYTNMQTS 185
Query: 173 HFYLLSEIARECKL---------TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F A+E + + SM ++ F+ VR+G GI+G P +
Sbjct: 186 LFEKAVNTAKEMDIHLPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYPSK 236
>gi|254720286|ref|ZP_05182097.1| metal-activated pyridoxal protein [Brucella sp. 83/13]
gi|265985304|ref|ZP_06098039.1| alanine racemase domain-containing protein [Brucella sp. 83/13]
gi|306839821|ref|ZP_07472620.1| metal-activated pyridoxal protein [Brucella sp. NF 2653]
gi|264663896|gb|EEZ34157.1| alanine racemase domain-containing protein [Brucella sp. 83/13]
gi|306405097|gb|EFM61377.1| metal-activated pyridoxal protein [Brucella sp. NF 2653]
Length = 355
Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNV 157
TV + + + L+ + + R L V ++ +TG + G+ P Q ++ + + L
Sbjct: 111 TVDNKTSLAGLAQRFMNEKRPLKVLVECDTGM--GRCGVQTPGQARELARIIEKSAGLCF 168
Query: 158 EGLMCIPPA--MGNPKPHFYLLSEI--ARECKLTKLSMGMTRD-FELAIASGATSVRIGS 212
GLM P + ++ A +S G T D + + + T R G+
Sbjct: 169 GGLMTYPATGRGDEAERWLRAARDLLAADGIACETISSGGTPDMWRIPAETVVTEYRPGT 228
Query: 213 GIFGER 218
I+ +R
Sbjct: 229 YIYFDR 234
>gi|306841724|ref|ZP_07474411.1| metal-activated pyridoxal protein [Brucella sp. BO2]
gi|306288254|gb|EFM59638.1| metal-activated pyridoxal protein [Brucella sp. BO2]
Length = 355
Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNV 157
TV + + + L+ + + R L V ++ +TG + G+ P Q ++ + + L
Sbjct: 111 TVDNKTSLAGLAQRFMNEKRPLKVLVECDTGM--GRCGVQTPGQARELARIIEKSAGLCF 168
Query: 158 EGLMCIPPAM--GNPKPHFYLLSEI--ARECKLTKLSMGMTRD-FELAIASGATSVRIGS 212
GLM P + ++ A +S G T D + + + T R G+
Sbjct: 169 GGLMTYPATGRADEAERWLRAARDLLAADGIACETISSGGTPDMWRIPAETVVTEYRPGT 228
Query: 213 GIFGER 218
I+ +R
Sbjct: 229 YIYFDR 234
>gi|228997192|ref|ZP_04156817.1| Alanine racemase [Bacillus mycoides Rock3-17]
gi|229004853|ref|ZP_04162583.1| Alanine racemase [Bacillus mycoides Rock1-4]
gi|228756406|gb|EEM05721.1| Alanine racemase [Bacillus mycoides Rock1-4]
gi|228762586|gb|EEM11508.1| Alanine racemase [Bacillus mycoides Rock3-17]
Length = 391
Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/238 (14%), Positives = 76/238 (31%), Gaps = 37/238 (15%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAENKLQE 60
L K + +++++A K + + + A+ G A + E
Sbjct: 14 NLDAVKHNVREFKKRV--NDKNIAMMAAVKANGYGHGAVEVAKAAIEAGVNQLAVAFVDE 71
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ V + +G + + D++ TV R + ++ + +
Sbjct: 72 GIE---LREAGVTVPILVLGYTPVEVAKDAIGY-DIMMTVYRIEDLKGINEIAKQLEK-- 125
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP-------- 172
+IQV + + G+ + F+ + + +EG+
Sbjct: 126 KAHIQVKIDTGMSRIGLQEEEVAPFLEELKNMKYIEIEGMFTHYSTADEINKIYTNMQTS 185
Query: 173 HFYLLSEIARECKL---------TKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F A+E + + SM ++ F+ VR+G GI+G P +
Sbjct: 186 LFEKAVNAAKEMGIHLPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYPSK 236
>gi|306845963|ref|ZP_07478530.1| metal-activated pyridoxal protein [Brucella sp. BO1]
gi|306273598|gb|EFM55443.1| metal-activated pyridoxal protein [Brucella sp. BO1]
Length = 355
Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNV 157
TV E + + L+ + + R L V ++ +TG + G+ P Q ++ + + L
Sbjct: 111 TVDNETSLAGLAQHFMNEKRPLKVLVECDTGM--GRCGVQTPGQARELARIIEKSAGLCF 168
Query: 158 EGLMCIPPAM--GNPKPHFYLLSEI--ARECKLTKLSMGMTRD-FELAIASGATSVRIGS 212
GLM P + ++ A +S G T D + + + T R G+
Sbjct: 169 GGLMTYPATGRADEAERWLREARDLLAADGIACETISSGGTPDMWRIPAETVVTEYRPGT 228
Query: 213 GIFGER 218
I+ +R
Sbjct: 229 YIYFDR 234
>gi|260544654|ref|ZP_05820475.1| alanine racemase domain-containing protein [Brucella abortus NCTC
8038]
gi|260756503|ref|ZP_05868851.1| alanine racemase domain-containing protein [Brucella abortus bv. 6
str. 870]
gi|260759935|ref|ZP_05872283.1| alanine racemase domain-containing protein [Brucella abortus bv. 4
str. 292]
gi|260763173|ref|ZP_05875505.1| alanine racemase domain-containing protein [Brucella abortus bv. 2
str. 86/8/59]
gi|260882323|ref|ZP_05893937.1| alanine racemase domain-containing protein [Brucella abortus bv. 9
str. C68]
gi|260097925|gb|EEW81799.1| alanine racemase domain-containing protein [Brucella abortus NCTC
8038]
gi|260670253|gb|EEX57193.1| alanine racemase domain-containing protein [Brucella abortus bv. 4
str. 292]
gi|260673594|gb|EEX60415.1| alanine racemase domain-containing protein [Brucella abortus bv. 2
str. 86/8/59]
gi|260676611|gb|EEX63432.1| alanine racemase domain-containing protein [Brucella abortus bv. 6
str. 870]
gi|260871851|gb|EEX78920.1| alanine racemase domain-containing protein [Brucella abortus bv. 9
str. C68]
Length = 300
Score = 53.9 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNV 157
TV + + + L+ + + R L V ++ +TG + G+ P Q ++ + + L
Sbjct: 56 TVDNKTSLAGLAQHFMNEKRPLKVLVECDTGM--GRCGVQTPGQARELAHIIEKSAGLCF 113
Query: 158 EGLMCIPPA--MGNPKPHFYLLSEI--ARECKLTKLSMGMTRD-FELAIASGATSVRIGS 212
GLM P + ++ A +S G T D + + + T R G+
Sbjct: 114 VGLMTYPATGRGDEAERWLREARDLLAADGIACETISSGGTPDMWRIPAETVVTEYRPGT 173
Query: 213 GIFGER 218
I+ +R
Sbjct: 174 YIYFDR 179
>gi|229043862|ref|ZP_04191559.1| Alanine racemase [Bacillus cereus AH676]
gi|228725487|gb|EEL76747.1| Alanine racemase [Bacillus cereus AH676]
Length = 408
Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 37/237 (15%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAENKLQEA 61
L K ++ + + ++A K + + + A+ G A + EA
Sbjct: 32 LDAVKHNVKEFKKHV--NDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVDEA 89
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ V + +G V +++ DV+ TV R + ++ + +
Sbjct: 90 IE---LREAGITVPILILGYTPVAAVEDVIQY-DVMMTVYRVEDLHGINEIANRLQK--K 143
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--------H 173
V IQV + + G+ + K F+ + + V G+
Sbjct: 144 VQIQVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSL 203
Query: 174 FYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F A+E + SM ++ F+ VR+G G++G P +
Sbjct: 204 FEKAVNTAKELGIQIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGVYGMYPSK 253
>gi|218234797|ref|YP_002366787.1| alanine racemase [Bacillus cereus B4264]
gi|296502685|ref|YP_003664385.1| alanine racemase [Bacillus thuringiensis BMB171]
gi|218162754|gb|ACK62746.1| alanine racemase [Bacillus cereus B4264]
gi|296323737|gb|ADH06665.1| alanine racemase [Bacillus thuringiensis BMB171]
Length = 391
Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 37/237 (15%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAENKLQEA 61
L K ++ + + ++A K + + + A+ G A + EA
Sbjct: 15 LNAVKHNVKEFKKHV--NDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVDEA 72
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ V + +G V +++ DV+ TV R + ++ + +
Sbjct: 73 IE---LREAGITVPILILGYTPVAAVEDVIQY-DVMMTVYRVEDLHGINEIANRLQK--K 126
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--------H 173
V IQV + + G+ + K F+ + + V G+
Sbjct: 127 VQIQVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSL 186
Query: 174 FYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F A+E + SM ++ F+ VR+G G++G P +
Sbjct: 187 FEKAVNTAKELGIQIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGVYGMYPSK 236
>gi|206972055|ref|ZP_03233003.1| alanine racemase [Bacillus cereus AH1134]
gi|206732978|gb|EDZ50152.1| alanine racemase [Bacillus cereus AH1134]
Length = 391
Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 37/237 (15%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAENKLQEA 61
L K ++ + + ++A K + + + A+ G A + EA
Sbjct: 15 LNAVKHNVKEFKKHV--NDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVDEA 72
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ V + +G V +++ DV+ TV R + ++ + +
Sbjct: 73 IE---LREAGITVPILILGYTPVAAVEDVIQY-DVMMTVYRVEDLHGINEIANRLQK--K 126
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--------H 173
V IQV + + G+ + K F+ + + V G+
Sbjct: 127 VQIQVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSL 186
Query: 174 FYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F A+E + SM ++ F+ VR+G G++G P +
Sbjct: 187 FEKAVNTAKELGIQIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGVYGMYPSK 236
>gi|153011211|ref|YP_001372425.1| alanine racemase domain-containing protein [Ochrobactrum anthropi
ATCC 49188]
gi|151563099|gb|ABS16596.1| alanine racemase domain protein [Ochrobactrum anthropi ATCC 49188]
Length = 354
Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 16/130 (12%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNV 157
TV + + L+ + L V ++ +TG + G+ P + + + Q L
Sbjct: 110 TVDNRTSLAGLAARFTDEKHPLKVLVECDTGM--GRCGVQTPAEALELARIIDQSAGLRF 167
Query: 158 EGLMCIPPAM--GNPKPHFYLLSEI--ARECKLTKLSMGMTRDF-----ELAIASGATSV 208
GLM P A + Y E+ A +S G T D + + T
Sbjct: 168 GGLMTYPAAGKPDEAEQWLYSARELLEANSLPCETISSGGTPDMWRKPSDSVV----TEY 223
Query: 209 RIGSGIFGER 218
R G+ I+ +R
Sbjct: 224 RPGTYIYFDR 233
>gi|326939811|gb|AEA15707.1| alanine racemase [Bacillus thuringiensis serovar chinensis CT-43]
Length = 391
Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 37/237 (15%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAENKLQEA 61
L K ++ + + ++A K + + + A+ G A + EA
Sbjct: 15 LNAVKHNVKEFKKHV--NDEEIKMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVDEA 72
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ V + +G V +++ DV+ TV R + ++ + +
Sbjct: 73 IE---LREAGITVPILILGYTPVAAVEDVIQY-DVMMTVYRVEDLHGINEIANRLQK--K 126
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--------H 173
V IQV + + G+ + K F+ + + V G+
Sbjct: 127 VQIQVKIDTGMSRIGLQEEEVKPFLEELNRMEYIEVVGIFTHYSTADEIDKSYTNMQTSL 186
Query: 174 FYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F A+E + SM ++ F+ VR+G G++G P +
Sbjct: 187 FEKAVNTAKELGIQIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGVYGMYPSK 236
>gi|282892299|ref|ZP_06300695.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281497890|gb|EFB40241.1| hypothetical protein pah_c221o033 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 836
Score = 53.5 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/231 (16%), Positives = 88/231 (38%), Gaps = 33/231 (14%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKM--VDSKKIRVA---LSCGQVIFAEN 56
++ + L + +QK+ L+ + K ++ I++A SC I +
Sbjct: 473 TIESNLNLIRQKL----------PSQTRLMVMVKALAYGTEDIQIAKFLASCQIDILGVS 522
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ E L++ Q F S ++++I+ + V + L+ E Q
Sbjct: 523 YVDEGI----ALKRAGVKQAIFALSATPAEITKILRWEIEV-GVGDQAFIQALAKEASIQ 577
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ + V++ ++TG + G P + + ++ L +EG+M + + +
Sbjct: 578 QKEIKVHLHIDTGM--SRFGCRPEEALPLAQMIQEAPFLKLEGVMTHFACAEDLEQDPFT 635
Query: 177 LSEI--ARECKLTKLSMGMTRDFELAIASGA---------TSVRIGSGIFG 216
+I ++G++ ++ A S A VRIG ++G
Sbjct: 636 HQQINKFDAAVAEIQALGISIPWKHAANSSAATRFHLPQYNMVRIGLAVYG 686
>gi|30020200|ref|NP_831831.1| alanine racemase [Bacillus cereus ATCC 14579]
gi|228962874|ref|ZP_04124117.1| Alanine racemase [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|229079274|ref|ZP_04211819.1| Alanine racemase [Bacillus cereus Rock4-2]
gi|229109560|ref|ZP_04239150.1| Alanine racemase [Bacillus cereus Rock1-15]
gi|229127502|ref|ZP_04256494.1| Alanine racemase [Bacillus cereus BDRD-Cer4]
gi|229144707|ref|ZP_04273107.1| Alanine racemase [Bacillus cereus BDRD-ST24]
gi|29895750|gb|AAP09032.1| Alanine racemase [Bacillus cereus ATCC 14579]
gi|228638759|gb|EEK95189.1| Alanine racemase [Bacillus cereus BDRD-ST24]
gi|228655959|gb|EEL11805.1| Alanine racemase [Bacillus cereus BDRD-Cer4]
gi|228673896|gb|EEL29150.1| Alanine racemase [Bacillus cereus Rock1-15]
gi|228704024|gb|EEL56465.1| Alanine racemase [Bacillus cereus Rock4-2]
gi|228796804|gb|EEM44171.1| Alanine racemase [Bacillus thuringiensis serovar pakistani str.
T13001]
Length = 408
Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 37/237 (15%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAENKLQEA 61
L K ++ + + ++A K + + + A+ G A + EA
Sbjct: 32 LNAVKHNVKEFKKHV--NDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVDEA 89
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ V + +G V +++ DV+ TV R + ++ + +
Sbjct: 90 IE---LREAGITVPILILGYTPVAAVEDVIQY-DVMMTVYRVEDLHGINEIANRLQK--K 143
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--------H 173
V IQV + + G+ + K F+ + + V G+
Sbjct: 144 VQIQVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSL 203
Query: 174 FYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F A+E + SM ++ F+ VR+G G++G P +
Sbjct: 204 FEKAVNTAKELGIQIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGVYGMYPSK 253
>gi|228985202|ref|ZP_04145367.1| Alanine racemase [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|228774497|gb|EEM22898.1| Alanine racemase [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
Length = 408
Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 85/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 34 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVA 84
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + LR+ I S +E +DV+ TV R + ++
Sbjct: 85 FVDEAIE----LREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANSL 140
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ + + V G+
Sbjct: 141 QKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTN 198
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM ++ F+ VR+G GI+G P
Sbjct: 199 MQTSLFEKAVNTAKELGIHIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 251
Query: 220 CQ 221
+
Sbjct: 252 SK 253
>gi|228920796|ref|ZP_04084136.1| Alanine racemase [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
gi|229190195|ref|ZP_04317198.1| Alanine racemase [Bacillus cereus ATCC 10876]
gi|228593312|gb|EEK51128.1| Alanine racemase [Bacillus cereus ATCC 10876]
gi|228838907|gb|EEM84208.1| Alanine racemase [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
Length = 408
Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 37/237 (15%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAENKLQEA 61
L K ++ + + ++A K + + + A+ G A + EA
Sbjct: 32 LNAVKHNVKEFKKHV--NDEEIKMMAAVKANGYGHGAVEVAKAAIEAGIHQLAVAFVDEA 89
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ V + +G V +++ DV+ TV R + ++ + +
Sbjct: 90 IE---LREAGITVPILILGYTPVAAVEDVIQY-DVMMTVYRVEDLHGINEIANRLQK--K 143
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--------H 173
V IQV + + G+ + K F+ + + V G+
Sbjct: 144 VQIQVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSL 203
Query: 174 FYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F A+E + SM ++ F+ VR+G G++G P +
Sbjct: 204 FEKAVNTAKELGIQIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGVYGMYPSK 253
>gi|254705776|ref|ZP_05167604.1| metal-activated pyridoxal protein [Brucella pinnipedialis
M163/99/10]
gi|261313198|ref|ZP_05952395.1| alanine racemase domain-containing protein [Brucella pinnipedialis
M163/99/10]
gi|261302224|gb|EEY05721.1| alanine racemase domain-containing protein [Brucella pinnipedialis
M163/99/10]
Length = 355
Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNV 157
TV + + + L+ + + R L V ++ +TG + G+ P Q ++ + + L
Sbjct: 111 TVDNKTSLAGLAQHFMNEKRPLKVLVECDTGM--GRCGVQTPGQARELAHIIEKSAGLCF 168
Query: 158 EGLMCIPPA--MGNPKPHFYLLSEI--ARECKLTKLSMGMTRD-FELAIASGATSVRIGS 212
GLM P + ++ A +S G T D + + + T R G+
Sbjct: 169 VGLMTYPATGRGDEAERWLREARDLLAADGIACETISSGGTPDMWRIPAETVVTEYRPGT 228
Query: 213 GIFGER 218
I+ +R
Sbjct: 229 YIYFDR 234
>gi|292669625|ref|ZP_06603051.1| alanine racemase [Selenomonas noxia ATCC 43541]
gi|292648834|gb|EFF66806.1| alanine racemase [Selenomonas noxia ATCC 43541]
Length = 368
Score = 53.1 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/180 (20%), Positives = 63/180 (35%), Gaps = 21/180 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKI-RVALSCGQVIFAEN 56
++ + ++ I + L AV K + + R A++ G A
Sbjct: 14 AIAHNYGEIRKYI----------RHEAKLCAVVKADAYGHGAIAVARKAIAAGAEYLAVA 63
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA K LR+ I L + S + D+ +TV R LS E Q
Sbjct: 64 TISEALK----LREAGFTTPLLILGLTKPESSFDIVDADLTQTVCRIDLVQALSAEATAQ 119
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ + V+I V+TG + + G+ P DF + +EG+ F
Sbjct: 120 GKRVKVHIAVDTG--LGRIGVRPEDAADFAKKITALPGIELEGIFSHFALADIEDKSFSR 177
>gi|229155693|ref|ZP_04283799.1| Alanine racemase [Bacillus cereus ATCC 4342]
gi|228627679|gb|EEK84400.1| Alanine racemase [Bacillus cereus ATCC 4342]
Length = 408
Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 86/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 34 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVA 84
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + LR+ I S +E +DV+ TV R + ++ +
Sbjct: 85 FVDEAIE----LREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRL 140
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ + + V G+
Sbjct: 141 QKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTN 198
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM ++ F+ +R+G GI+G P
Sbjct: 199 MQTSLFEKAVNTAKELGIHIPYIHSSNSAGSMELSNTFQ-------NMIRVGIGIYGMYP 251
Query: 220 CQ 221
+
Sbjct: 252 SK 253
>gi|189916723|gb|ACE62872.1| conserved hypothetical protein HL [Xylella fastidiosa]
Length = 58
Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKM 36
+ + L +I + R SV+L+ VSK
Sbjct: 23 DIRSNLTKVYSRIIAACQRVNRDPSSVTLLPVSKT 57
>gi|228939234|ref|ZP_04101827.1| Alanine racemase [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228972113|ref|ZP_04132729.1| Alanine racemase [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228978725|ref|ZP_04139096.1| Alanine racemase [Bacillus thuringiensis Bt407]
gi|228780986|gb|EEM29193.1| Alanine racemase [Bacillus thuringiensis Bt407]
gi|228787597|gb|EEM35560.1| Alanine racemase [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228820429|gb|EEM66461.1| Alanine racemase [Bacillus thuringiensis serovar berliner ATCC
10792]
Length = 408
Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 37/237 (15%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAENKLQEA 61
L K ++ + + ++A K + + + A+ G A + EA
Sbjct: 32 LNAVKHNVKEFKKHV--NDEEIKMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVDEA 89
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ V + +G V +++ DV+ TV R + ++ + +
Sbjct: 90 IE---LREAGITVPILILGYTPVAAVEDVIQY-DVMMTVYRVEDLHGINEIANRLQK--K 143
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--------H 173
V IQV + + G+ + K F+ + + V G+
Sbjct: 144 VQIQVKIDTGMSRIGLQEEEVKPFLEELNRMEYIEVVGIFTHYSTADEIDKSYTNMQTSL 203
Query: 174 FYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F A+E + SM ++ F+ VR+G G++G P +
Sbjct: 204 FEKAVNTAKELGIQIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGVYGMYPSK 253
>gi|302390042|ref|YP_003825863.1| alanine racemase domain protein [Thermosediminibacter oceani DSM
16646]
gi|302200670|gb|ADL08240.1| alanine racemase domain protein [Thermosediminibacter oceani DSM
16646]
Length = 355
Score = 53.1 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/232 (18%), Positives = 87/232 (37%), Gaps = 39/232 (16%)
Query: 6 KLQVFKQK---IENSAILAKRPKDSVSLVAVSKMV----DSKKIRVALSCGQVIFAENKL 58
L + ++ I + + + ++ ++K +R + G ++++
Sbjct: 9 NLSLIRENARYIVDLCKRSG-----IEVMGITKGFCALLPV--VRTMVDGGVKKLGDSRI 61
Query: 59 QEAKKKWIPLRKE--WDVQLRFIGSLQSNKVSEIVSLFDVIETVSRE-KTASLLSLEMIK 115
K I K ++ + I ++V E+V D + + E + LLS +
Sbjct: 62 -----KNIKNMKCSGLEIPIYLIRIPMPSEVEEVVRWADG--SFNSEPEVIDLLSEKARA 114
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-------IPPAMG 168
+ V + V+ G + G+MP + V + + EGL + P+
Sbjct: 115 LGKIHRVILMVDVG--DLREGVMPEDVPEVVGRILEMPGVEFEGLGTNVGCYGGVLPSYE 172
Query: 169 NPKPHFYLLSEIARE--CKLTKLSMGMTRDFELA----IASGATSVRIGSGI 214
N K L +I + ++ +S G T +L IA G +RIG GI
Sbjct: 173 NTKILVDLARDIEKRYGVRVKTISGGNTATLKLVENGRIAPGVNQLRIGEGI 224
>gi|212639867|ref|YP_002316387.1| putative amino acid racemase [Anoxybacillus flavithermus WK1]
gi|212561347|gb|ACJ34402.1| Predicted amino acid racemase [Anoxybacillus flavithermus WK1]
Length = 366
Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 43/212 (20%), Positives = 78/212 (36%), Gaps = 33/212 (15%)
Query: 28 VSLVAVSKMV--DSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQL----RFIGS 81
+ + AV K V D + R + G A K + K + I +
Sbjct: 28 IQMTAVVKGVNGDVEIARTLVDSGVTSL-------ADTKIERIAKLKSTHIPATYMLIRT 80
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
++VSE+V D + S +S E +KQ++ + + V G + G+MP
Sbjct: 81 PALSEVSEVVRHVD-VSAQSEIDVVRAISAEAVKQNKTHAIIVMVEMG--DLREGVMPED 137
Query: 142 TKDFVILCRQKYQLNVEGL----MCIPPAMGNPKPHFYLLSEIARECK------LTKLSM 191
F+ RQ + + G+ C + + LS +A+ + L +S
Sbjct: 138 VPAFIEQVRQLPNIQLAGIGANFACFGGIIPTEQK-MRELSSLAKHIQKEYTLFLPYVSG 196
Query: 192 GMTRDFELAIASGA-----TSVRIGSGIFGER 218
G + ++ + A +R+G IF R
Sbjct: 197 GNSANYYW-LKQTADVGCINHLRLGEAIFLGR 227
>gi|169841847|ref|ZP_02874956.1| hypothetical protein cdivTM_32110 [candidate division TM7
single-cell isolate TM7a]
Length = 47
Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 177 LSEIARECK-----LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ + E + +T LSMGM+ D+ A+ +GAT +RIGS +F
Sbjct: 3 MRNLKEEYQEKYDYITTLSMGMSNDYIEALKNGATIIRIGSKLF 46
>gi|189916719|gb|ACE62870.1| conserved hypothetical protein HL [Xylella fastidiosa]
Length = 57
Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKM 36
+ + L +I + R SV+L+ VSK
Sbjct: 23 DIRSNLTKVYSRIIAACQRVNRDPSSVTLLPVSKT 57
>gi|313896008|ref|ZP_07829562.1| alanine racemase [Selenomonas sp. oral taxon 137 str. F0430]
gi|312975433|gb|EFR40894.1| alanine racemase [Selenomonas sp. oral taxon 137 str. F0430]
Length = 368
Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/194 (18%), Positives = 70/194 (36%), Gaps = 23/194 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKI-RVALSCGQVIFAEN 56
++ + ++ I+ A L AV K + + R A++ G A
Sbjct: 14 AIAHNYSEIRKHIQKDA----------KLCAVVKADAYGHGAIAVARKAIAAGAEYLALA 63
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA K + + +G ++ +IV D+ +TV R A LS E + Q
Sbjct: 64 TISEAL-KLREAGFTTPLLI--LGLTKAENSFDIVD-ADITQTVCRLDLAEALSAEAVCQ 119
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY- 175
++ + V++ V+TG + + G+ P + +EG+ F
Sbjct: 120 NKTVKVHLAVDTG--LGRIGVRPEDAASMARAIISLPNVELEGVFSHFALADTADKSFAM 177
Query: 176 -LLSEIARECKLTK 188
+ A C +
Sbjct: 178 QQVRLFAEACDAIE 191
>gi|311032754|ref|ZP_07710844.1| alanine racemase domain protein [Bacillus sp. m3-13]
Length = 390
Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 19/134 (14%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNV 157
TV + LL + K S L V+I+VN+G + + G+ P + + +L +
Sbjct: 109 TVDSLEQVKLLQKALEKTSHSLEVWIKVNSG--LNRCGVEPGERAVELAKAIILLSRLRI 166
Query: 158 EGLMCIP--PAMGNPKPHFYLL-----------SEIARECKLTKL--SMGMTRDFELA-I 201
G+ N K + +E + + L S+G T + ++ +
Sbjct: 167 GGIFTHAGHSYGANGKEELERIALAEADAVVKSAEACEKAGIPILVRSVGSTPTYRISGL 226
Query: 202 ASGATSVRIGSGIF 215
G T VR G+ +F
Sbjct: 227 VDGITEVRPGNAVF 240
>gi|218903226|ref|YP_002451060.1| alanine racemase [Bacillus cereus AH820]
gi|218535647|gb|ACK88045.1| alanine racemase [Bacillus cereus AH820]
Length = 391
Score = 52.7 bits (126), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/242 (14%), Positives = 85/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 17 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEAGINQLAVA 67
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + +V + +G E + ++ TV R + ++ +
Sbjct: 68 FVDEAIE---LREAGINVPILILGYTSVAATEEAIQYGVMM-TVYRSEDLQGINEIANRL 123
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ ++ + V G+
Sbjct: 124 QKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELKRMEYVEVVGMFTHYSTADEIDKSYTN 181
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM ++ F+ VR+G GI+G P
Sbjct: 182 MQTSLFEKAVNTAKELGIHIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 234
Query: 220 CQ 221
+
Sbjct: 235 SK 236
>gi|225686513|ref|YP_002734485.1| alanine racemase domain-containing protein [Brucella melitensis
ATCC 23457]
gi|256262349|ref|ZP_05464881.1| alanine racemase domain-containing protein [Brucella melitensis bv.
2 str. 63/9]
gi|225642618|gb|ACO02531.1| alanine racemase domain protein [Brucella melitensis ATCC 23457]
gi|263092078|gb|EEZ16375.1| alanine racemase domain-containing protein [Brucella melitensis bv.
2 str. 63/9]
gi|326410894|gb|ADZ67958.1| alanine racemase domain-containing protein [Brucella melitensis
M28]
gi|326554185|gb|ADZ88824.1| alanine racemase domain-containing protein [Brucella melitensis
M5-90]
Length = 355
Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNV 157
TV + + + L+ + + R L V ++ +TG + G+ P Q ++ + + L
Sbjct: 111 TVDNKTSLAGLAQHFMNEKRPLKVLVECDTGM--GRCGVQTPGQARELAHIIEKSAGLCF 168
Query: 158 EGLMCIPPA--MGNPKPHFYLLSEI--ARECKLTKLSMGMTRD-FELAIASGATSVRIGS 212
GLM P + ++ A +S G T D + + + T R G+
Sbjct: 169 GGLMTYPATGRGDEAERWLREARDLLAADGIACETISSGGTPDMWRIPAETVVTEYRPGT 228
Query: 213 GIFGER 218
I+ +R
Sbjct: 229 YIYFDR 234
>gi|161620802|ref|YP_001594688.1| alanine racemase [Brucella canis ATCC 23365]
gi|161337613|gb|ABX63917.1| Alanine racemase [Brucella canis ATCC 23365]
Length = 355
Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNV 157
TV + + + L+ + + R L V ++ +TG + G+ P Q ++ + + L
Sbjct: 111 TVDNKTSLAGLAQHFMNEKRPLKVLVECDTGM--GRCGVQTPGQARELAHIIEKSAGLCF 168
Query: 158 EGLMCIPPA--MGNPKPHFYLLSEI--ARECKLTKLSMGMTRD-FELAIASGATSVRIGS 212
GLM P + ++ A +S G T D + + + T R G+
Sbjct: 169 GGLMTYPATGRGDEAERWLREARDLLAADGIACETISSGGTPDMWRIPAETVVTEYRPGT 228
Query: 213 GIFGER 218
I+ +R
Sbjct: 229 YIYFDR 234
>gi|17988891|ref|NP_541524.1| metal-activated pyridoxal protein [Brucella melitensis bv. 1 str.
16M]
gi|225629220|ref|ZP_03787253.1| metal-activated pyridoxal protein [Brucella ceti str. Cudo]
gi|17984718|gb|AAL53788.1| metal-activated pyridoxal enzyme [Brucella melitensis bv. 1 str.
16M]
gi|225615716|gb|EEH12765.1| metal-activated pyridoxal protein [Brucella ceti str. Cudo]
Length = 360
Score = 52.7 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNV 157
TV + + + L+ + + R L V ++ +TG + G+ P Q ++ + + L
Sbjct: 116 TVDNKTSLAGLAQHFMNEKRPLKVLVECDTGM--GRCGVQTPGQARELAHIIEKSAGLCF 173
Query: 158 EGLMCIPPA--MGNPKPHFYLLSEI--ARECKLTKLSMGMTRD-FELAIASGATSVRIGS 212
GLM P + ++ A +S G T D + + + T R G+
Sbjct: 174 GGLMTYPATGRGDEAERWLREARDLLAADGIACETISSGGTPDMWRIPAETVVTEYRPGT 233
Query: 213 GIFGER 218
I+ +R
Sbjct: 234 YIYFDR 239
>gi|254699959|ref|ZP_05161787.1| metal-activated pyridoxal protein [Brucella suis bv. 5 str. 513]
gi|261750439|ref|ZP_05994148.1| alanine racemase domain-containing protein [Brucella suis bv. 5
str. 513]
gi|261740192|gb|EEY28118.1| alanine racemase domain-containing protein [Brucella suis bv. 5
str. 513]
Length = 355
Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNV 157
TV + + + L+ + + R L V ++ +TG + G+ P Q ++ + + L
Sbjct: 111 TVDNKTSLAGLAQHFMNEKRPLKVLVECDTGM--GRCGVQTPGQARELAHIIEKSAGLCF 168
Query: 158 EGLMCIPPA--MGNPKPHFYLLSEI--ARECKLTKLSMGMTRD-FELAIASGATSVRIGS 212
GLM P + ++ A +S G T D + + + T R G+
Sbjct: 169 GGLMTYPATGRGDEAERWLREARDLLAADGIACETISSGGTPDMWRIPAETVVTEYRPGT 228
Query: 213 GIFGER 218
I+ +R
Sbjct: 229 YIYFDR 234
>gi|23500480|ref|NP_699920.1| amino acid processing-like protein [Brucella suis 1330]
gi|148557939|ref|YP_001257694.1| amino acid processing-like protein [Brucella ovis ATCC 25840]
gi|163844874|ref|YP_001622529.1| hypothetical protein BSUIS_B0735 [Brucella suis ATCC 23445]
gi|254703081|ref|ZP_05164909.1| metal-activated pyridoxal protein [Brucella suis bv. 3 str. 686]
gi|254711007|ref|ZP_05172818.1| metal-activated pyridoxal protein [Brucella pinnipedialis B2/94]
gi|256015507|ref|YP_003105516.1| amino acid processing enzyme-related protein [Brucella microti CCM
4915]
gi|256029389|ref|ZP_05443003.1| metal-activated pyridoxal protein [Brucella pinnipedialis
M292/94/1]
gi|256043620|ref|ZP_05446547.1| metal-activated pyridoxal protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|256059078|ref|ZP_05449287.1| metal-activated pyridoxal protein [Brucella neotomae 5K33]
gi|256111342|ref|ZP_05452368.1| metal-activated pyridoxal protein [Brucella melitensis bv. 3 str.
Ether]
gi|256157582|ref|ZP_05455500.1| metal-activated pyridoxal protein [Brucella ceti M490/95/1]
gi|256253443|ref|ZP_05458979.1| metal-activated pyridoxal protein [Brucella ceti B1/94]
gi|260167522|ref|ZP_05754333.1| metal-activated pyridoxal protein [Brucella sp. F5/99]
gi|260564811|ref|ZP_05835296.1| alanine racemase domain-containing protein [Brucella melitensis bv.
1 str. 16M]
gi|260567990|ref|ZP_05838459.1| alanine racemase domain-containing protein [Brucella suis bv. 4
str. 40]
gi|261220568|ref|ZP_05934849.1| alanine racemase domain-containing protein [Brucella ceti B1/94]
gi|261318591|ref|ZP_05957788.1| alanine racemase domain-containing protein [Brucella pinnipedialis
B2/94]
gi|261323024|ref|ZP_05962221.1| alanine racemase domain-containing protein [Brucella neotomae 5K33]
gi|261753697|ref|ZP_05997406.1| alanine racemase domain-containing protein [Brucella suis bv. 3
str. 686]
gi|261756939|ref|ZP_06000648.1| alanine racemase domain-containing protein [Brucella sp. F5/99]
gi|265986391|ref|ZP_06098948.1| alanine racemase domain-containing protein [Brucella pinnipedialis
M292/94/1]
gi|265990040|ref|ZP_06102597.1| alanine racemase domain-containing protein [Brucella melitensis bv.
1 str. Rev.1]
gi|265992849|ref|ZP_06105406.1| alanine racemase domain-containing protein [Brucella melitensis bv.
3 str. Ether]
gi|265996085|ref|ZP_06108642.1| alanine racemase domain-containing protein [Brucella ceti
M490/95/1]
gi|294853480|ref|ZP_06794152.1| metal-activated pyridoxal protein [Brucella sp. NVSL 07-0026]
gi|23464109|gb|AAN33925.1| amino acid processing enzyme-related protein [Brucella suis 1330]
gi|148369224|gb|ABQ62096.1| amino acid processing enzyme-related protein [Brucella ovis ATCC
25840]
gi|163675597|gb|ABY39707.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
gi|255998167|gb|ACU49854.1| amino acid processing enzyme-related protein [Brucella microti CCM
4915]
gi|260152454|gb|EEW87547.1| alanine racemase domain-containing protein [Brucella melitensis bv.
1 str. 16M]
gi|260154655|gb|EEW89736.1| alanine racemase domain-containing protein [Brucella suis bv. 4
str. 40]
gi|260919152|gb|EEX85805.1| alanine racemase domain-containing protein [Brucella ceti B1/94]
gi|261297814|gb|EEY01311.1| alanine racemase domain-containing protein [Brucella pinnipedialis
B2/94]
gi|261299004|gb|EEY02501.1| alanine racemase domain-containing protein [Brucella neotomae 5K33]
gi|261736923|gb|EEY24919.1| alanine racemase domain-containing protein [Brucella sp. F5/99]
gi|261743450|gb|EEY31376.1| alanine racemase domain-containing protein [Brucella suis bv. 3
str. 686]
gi|262550382|gb|EEZ06543.1| alanine racemase domain-containing protein [Brucella ceti
M490/95/1]
gi|262763719|gb|EEZ09751.1| alanine racemase domain-containing protein [Brucella melitensis bv.
3 str. Ether]
gi|263000709|gb|EEZ13399.1| alanine racemase domain-containing protein [Brucella melitensis bv.
1 str. Rev.1]
gi|264658588|gb|EEZ28849.1| alanine racemase domain-containing protein [Brucella pinnipedialis
M292/94/1]
gi|294819135|gb|EFG36135.1| metal-activated pyridoxal protein [Brucella sp. NVSL 07-0026]
Length = 355
Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNV 157
TV + + + L+ + + R L V ++ +TG + G+ P Q ++ + + L
Sbjct: 111 TVDNKTSLAGLAQHFMNEKRPLKVLVECDTGM--GRCGVQTPGQARELAHIIEKSAGLCF 168
Query: 158 EGLMCIPPA--MGNPKPHFYLLSEI--ARECKLTKLSMGMTRD-FELAIASGATSVRIGS 212
GLM P + ++ A +S G T D + + + T R G+
Sbjct: 169 GGLMTYPATGRGDEAERWLREARDLLAADGIACETISSGGTPDMWRIPAETVVTEYRPGT 228
Query: 213 GIFGER 218
I+ +R
Sbjct: 229 YIYFDR 234
>gi|229096607|ref|ZP_04227578.1| Alanine racemase [Bacillus cereus Rock3-29]
gi|229115582|ref|ZP_04244988.1| Alanine racemase [Bacillus cereus Rock1-3]
gi|228667995|gb|EEL23431.1| Alanine racemase [Bacillus cereus Rock1-3]
gi|228686813|gb|EEL40720.1| Alanine racemase [Bacillus cereus Rock3-29]
Length = 408
Score = 52.3 bits (125), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/200 (17%), Positives = 64/200 (32%), Gaps = 30/200 (15%)
Query: 39 SKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE 98
+ + A+ G A + EA + LR+ I S +E +DV+
Sbjct: 67 VEVAKAAIEAGVNQLAVAFVDEAIE----LREAGITVPILILGYTSVAAAESAIQYDVMM 122
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
TV R + ++ + IQV + + G+ + K F+ + + V
Sbjct: 123 TVYRIEDLQGINEIAQRLQNKAR--IQVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVV 180
Query: 159 GLMCIPPAMGNPKP--------HFYLLSEIARECKLTKL---------SMGMTRDFELAI 201
G+ F A E + SM ++ F+
Sbjct: 181 GMFTHYSTADEIDKSYTNMQTSLFEKAVNTANELGMQIPYIHSSNSAGSMELSNTFQ--- 237
Query: 202 ASGATSVRIGSGIFGERPCQ 221
VR+G G++G P +
Sbjct: 238 ----NMVRVGIGVYGMYPSK 253
>gi|108757337|ref|YP_631327.1| alanine racemase domain-containing protein [Myxococcus xanthus DK
1622]
gi|108461217|gb|ABF86402.1| alanine racemase domain protein [Myxococcus xanthus DK 1622]
Length = 363
Score = 52.3 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 44/140 (31%), Gaps = 23/140 (16%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNV 157
+ + +LS + R + V ++++ G + G+ P L
Sbjct: 108 ALDSGEALEMLSRAARRAGRTVGVLVELDLGMR--RVGVQSPEDAVALARAVTSSSGLEY 165
Query: 158 EGL--------MCIPPAMGNPKPHFYLLS----EIARE-CKLTKLSMGMTRDF----ELA 200
G+ M + L+ +A + +S G T E+A
Sbjct: 166 RGITFYAGHLRMPQAELGDAMREQSVRLATYVDTLADAGLRPKTVSGGSTPTLWRSHEVA 225
Query: 201 IASGATSVRIGSGIFGERPC 220
G T +R G IF +R
Sbjct: 226 ---GLTEIRPGINIFNDRNA 242
>gi|146340130|ref|YP_001205178.1| putative amino acid processing-like protein [Bradyrhizobium sp.
ORS278]
gi|146192936|emb|CAL76943.1| putative amino acid processing enzyme-related protein (aldolase or
racemase) [Bradyrhizobium sp. ORS278]
Length = 359
Score = 52.3 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 77/228 (33%), Gaps = 28/228 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR----VALSCGQVI--FAEN 56
+ + + + +A +A RP K S + A + G E
Sbjct: 25 VERNIARIQAQCA-AAGVANRPHI--------KTHKSPVLAKLQIEAGAQGITCQKIGE- 74
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
A+ + IG + +++ + + D+ + L +
Sbjct: 75 ----AEIMADAGINNILISYNLIGEEKMARLAALQAKADMTVAADNATVIAGLPQAAKQS 130
Query: 117 SRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMG-NPKPHF 174
R L V ++ +TG +++G+ P + + L G M P G + F
Sbjct: 131 GRTLSVVVECDTGR--KRAGVETPAEAIQLARQIKASEGLRFAGFMLYPTESGWDDAQRF 188
Query: 175 ---YLLSEIARECKLTKLSMGMTRDFE-LAIASGATSVRIGSGIFGER 218
L A + + +S G + + + + GAT R G+ I+ +R
Sbjct: 189 YDEALAGVRAEGLEASIVSTGGSPNLKNIGKLKGATEHRPGTYIYNDR 236
>gi|320529492|ref|ZP_08030578.1| alanine racemase [Selenomonas artemidis F0399]
gi|320138286|gb|EFW30182.1| alanine racemase [Selenomonas artemidis F0399]
Length = 368
Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/194 (18%), Positives = 70/194 (36%), Gaps = 23/194 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKI-RVALSCGQVIFAEN 56
++ + ++ I+ A L AV K + + R A++ G A
Sbjct: 14 AIAHNYGEIRKHIQKDA----------KLCAVVKADAYGHGAIAVARKAIAAGAEYLALA 63
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA K + + +G ++ +IV D+ +TV R A LS E + Q
Sbjct: 64 TISEAL-KLREAGFTTPLLI--LGLTKAENSFDIVD-ADITQTVCRLDLAEALSAEAVCQ 119
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY- 175
++ + V++ V+TG + + G+ P + +EG+ F
Sbjct: 120 NKTVKVHLAVDTG--LGRIGVRPEDAASMARAIISLPNVELEGVFSHFALADTADKSFAM 177
Query: 176 -LLSEIARECKLTK 188
+ A C +
Sbjct: 178 QQVRLFAEACDAIE 191
>gi|300725221|ref|YP_003714549.1| hypothetical protein XNC1_4463 [Xenorhabdus nematophila ATCC 19061]
gi|297631766|emb|CBJ92485.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061]
Length = 391
Score = 52.0 bits (124), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/173 (20%), Positives = 65/173 (37%), Gaps = 22/173 (12%)
Query: 70 KEWDVQLRFIGSL-QS--NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ + L IG L Q+ + + ++ I TV + A +S K PV ++V
Sbjct: 93 SQHGIPLCHIGHLVQTPTHLIETMLKHHPDIITVFSLEKAQAISDAAEKLGLIQPVMLKV 152
Query: 127 ----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK-----PHFYLL 177
+ + Q+SGI N+ V ++ + + GL P + + P LL
Sbjct: 153 FDKRDIVFPYQESGITFNELDATVAALKRMPGIKLSGLTHFPCLSWDARYKTTLPTINLL 212
Query: 178 SEIARECKLTKLSMGMT----------RDFELAIASGATSVRIGSGIFGERPC 220
+ I ++ +L + ++ L GAT + G + G P
Sbjct: 213 TLIRARNRVEQLGVKLSQINAPSVSSCNTIPLLAKYGATHLEPGHALTGTIPA 265
>gi|118589064|ref|ZP_01546471.1| putative amino acid processing protein [Stappia aggregata IAM
12614]
gi|118438393|gb|EAV45027.1| putative amino acid processing protein [Stappia aggregata IAM
12614]
Length = 334
Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 35/194 (18%), Positives = 75/194 (38%), Gaps = 16/194 (8%)
Query: 35 KMV--DS-KKIRVAL-SCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
K + +++A +CG K+ EA+ + + +G+ + +++ +
Sbjct: 24 KTHKIPALAALQLAYGACGINC---QKISEAEVFADAGFTDILITFNMLGNSRLDRLKLL 80
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILC 149
+ D+ E L+ E + L V ++ +TG ++G+ P +
Sbjct: 81 NTKVDLQVVADNEVVVDGLA-EAFSGGQPLKVLVECDTGG--GRNGVQSPAAAVELAKRI 137
Query: 150 RQKYQLNVEGLMCIPPAMGN--PKPHFYLLSEIARECKLT--KLSMGMTRD-FELAIASG 204
++ L GL+ P + HF + ++ L +S G + F+ +
Sbjct: 138 DEQPGLVFRGLLTYPKPSSEVVVEAHFSETLALLKQAGLECPVVSHGGSPGLFDSDLVPS 197
Query: 205 ATSVRIGSGIFGER 218
AT R G+ IF +R
Sbjct: 198 ATEHRAGTYIFNDR 211
>gi|218897074|ref|YP_002445485.1| alanine racemase [Bacillus cereus G9842]
gi|218544621|gb|ACK97015.1| alanine racemase [Bacillus cereus G9842]
Length = 391
Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 35/200 (17%), Positives = 67/200 (33%), Gaps = 30/200 (15%)
Query: 39 SKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE 98
+ + A+ G A + EA + V + +G V +++ DV+
Sbjct: 50 VEVAKAAIEAGINQLAVAFVDEAIE---LREAGITVPILILGYTPVAAVEDVIQY-DVMM 105
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
TV R + ++ + + V IQV + + G+ + K F+ + + V
Sbjct: 106 TVYRVEDLHGINEIANRLQK--KVQIQVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVV 163
Query: 159 GLMCIPPAMGNPKP--------HFYLLSEIARECKLTKL---------SMGMTRDFELAI 201
G+ F ARE + SM ++ F+
Sbjct: 164 GIFTHYSTADEIDKSYTNMQTSLFEKAVNTARELGIQIPYIHSSNSAGSMELSNTFQ--- 220
Query: 202 ASGATSVRIGSGIFGERPCQ 221
VR+G G++G P +
Sbjct: 221 ----NMVRVGIGVYGMYPSK 236
>gi|229172800|ref|ZP_04300355.1| Alanine racemase [Bacillus cereus MM3]
gi|228610688|gb|EEK67955.1| Alanine racemase [Bacillus cereus MM3]
Length = 408
Score = 52.0 bits (124), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/242 (16%), Positives = 86/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 34 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKAAIEVGIDQLAVA 84
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + LR+ I S +E +DV+ TV R + ++ +
Sbjct: 85 FVDEAIE----LREAGINVPILILGYTSVAAAEEAIQYDVMMTVYRSEDLQGINEIANRL 140
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ IQV + + G+ + K F+ + + V G+
Sbjct: 141 QKKAQ--IQVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGMFTHYSTADEIDKSYTN 198
Query: 173 ----HFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM ++ F+ VR+G GI+G P
Sbjct: 199 MQTSLFEKAVNAAKELGIHIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 251
Query: 220 CQ 221
+
Sbjct: 252 SK 253
>gi|84386391|ref|ZP_00989419.1| Predicted amino acid racemase [Vibrio splendidus 12B01]
gi|84378815|gb|EAP95670.1| Predicted amino acid racemase [Vibrio splendidus 12B01]
Length = 378
Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 43/210 (20%), Positives = 86/210 (40%), Gaps = 33/210 (15%)
Query: 27 SVSLVAVSK---MVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
++S+ V+K +V + G + A++++ E +K + I +
Sbjct: 28 NISVTPVTKAFLGHPIIA-QVLIDAGATMLADSRI-ENLQKMTE--SGIAIPKMLIRTPM 83
Query: 84 SNKVSEIVSLFDVIETVSRE-KTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
++V+ ++ D+ +++ E + LS +Q+ + I V G + G+MPN+
Sbjct: 84 LSQVASVIKYSDM--SLNSEVEVIQRLSHAAEQQNCCHGIIIMVELG--DLREGVMPNRV 139
Query: 143 KDFVILCRQKYQLNVEGLMC-------IPPAMGNPKPHFYLLSEIARECK------LTKL 189
DF+ + ++G+ + P N +LSE+A + L +
Sbjct: 140 IDFIREIISLPNITIKGIGTNLACRYGVAPDDQN----MSILSELADGIEATFGVSLEII 195
Query: 190 SMGMTRDFELAIA-SGATSV---RIGSGIF 215
S G + A+ +G T V RIG IF
Sbjct: 196 SGGNSASVNWALQRTGLTRVNNLRIGEAIF 225
>gi|75763091|ref|ZP_00742872.1| Alanine racemase [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|228900692|ref|ZP_04064911.1| Alanine racemase [Bacillus thuringiensis IBL 4222]
gi|74489425|gb|EAO52860.1| Alanine racemase [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|228858950|gb|EEN03391.1| Alanine racemase [Bacillus thuringiensis IBL 4222]
Length = 408
Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 35/200 (17%), Positives = 67/200 (33%), Gaps = 30/200 (15%)
Query: 39 SKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE 98
+ + A+ G A + EA + V + +G V +++ DV+
Sbjct: 67 VEVAKAAIEAGINQLAVAFVDEAIE---LREAGITVPILILGYTPVAAVEDVIQY-DVMM 122
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
TV R + ++ + + V IQV + + G+ + K F+ + + V
Sbjct: 123 TVYRVEDLHGINEIANRLQK--KVQIQVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVV 180
Query: 159 GLMCIPPAMGNPKP--------HFYLLSEIARECKLTKL---------SMGMTRDFELAI 201
G+ F ARE + SM ++ F+
Sbjct: 181 GIFTHYSTADEIDKSYTNMQTSLFEKAVNTARELGIQIPYIHSSNSAGSMELSNTFQ--- 237
Query: 202 ASGATSVRIGSGIFGERPCQ 221
VR+G G++G P +
Sbjct: 238 ----NMVRVGIGVYGMYPSK 253
>gi|254488689|ref|ZP_05101894.1| metal-activated pyridoxal enzyme [Roseobacter sp. GAI101]
gi|214045558|gb|EEB86196.1| metal-activated pyridoxal enzyme [Roseobacter sp. GAI101]
Length = 351
Score = 51.6 bits (123), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 12/160 (7%)
Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETV--SREKTASLLSLEMIKQSRFLPVYIQVN 127
+ + +G+ + +++ I + +V T L+ L V ++ +
Sbjct: 78 DDVLITFNILGTGKLSRLRAIADKVRL--SVVADNTTTIDGLAGAFSDADAPLSVLVECD 135
Query: 128 TGYEIQKSGIM-PNQTKDFVILCRQKYQLNVEGLMCIPPAMGN--PKPHFYLLSEIAREC 184
TG + G+ P + + L GLM PPA + ++
Sbjct: 136 TG--AARCGVATPQAAGELATYIAGQPGLTFGGLMTYPPAEQERFVQSWLTEAKDLIEAS 193
Query: 185 KLT--KLSMGMTRDFELAIASG-ATSVRIGSGIFGERPCQ 221
L +S G + A AT RIG+ +F +R Q
Sbjct: 194 GLDVPVISNGGSPGMWQAQDVPVATEYRIGTYVFNDRSLQ 233
>gi|212710795|ref|ZP_03318923.1| hypothetical protein PROVALCAL_01863 [Providencia alcalifaciens DSM
30120]
gi|212686492|gb|EEB46020.1| hypothetical protein PROVALCAL_01863 [Providencia alcalifaciens DSM
30120]
Length = 413
Score = 51.6 bits (123), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 19/142 (13%)
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF--VIL 148
+ F V E + A L+ KQ+ +P+++ +N+ + ++G+ + + L
Sbjct: 137 ATEFHVEELIGNLDMAQRLNAIGAKQNTIIPIHLALNSAG-MSRNGLEVSNAEGLQQAKL 195
Query: 149 CRQKYQLNVEGLMCIPPAMGNP--KPHFYLLSEIARE-CKLTKLSMGMTRDFELAIASG- 204
Q L + G+M P + + +++ K+T L D L +A+
Sbjct: 196 ISQLPNLKIVGIMSHYPEEDEAQIRQDLAKFKKQSQQVLKMTGLKR---EDVTLHVANTY 252
Query: 205 AT---------SVRIGSGIFGE 217
AT VR+G +G+
Sbjct: 253 ATLTVPESWLDMVRVGGIFYGD 274
>gi|302893735|ref|XP_003045748.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256726675|gb|EEU40035.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 343
Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 66/203 (32%), Gaps = 28/203 (13%)
Query: 36 MVDSKKIRVALSCGQV--IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL 93
+ R ++ G A K+ EA+ + + IG + KV +V L
Sbjct: 26 TKSAILARKLVAAGAKGCCVA--KVSEAEAITAAGFDDILITCEIIGPV---KVKRLVEL 80
Query: 94 FDVIET----VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVIL 148
F +T V E AS ++ + K P+ + V+ ++++G+ Q
Sbjct: 81 FRKHKTIRIVVDSEVGASAINDALEKSGITEPISVLVDLDVGLRRTGVAAGQPAVALAKH 140
Query: 149 CRQKYQLNVEGLMCIPPA-------MGNPKPHFYLLSEI--------ARECKLTKLSMGM 193
L + G+ K + + + ++ G
Sbjct: 141 ISSLKHLRLIGIQGYEGHLQHLHSREDRKKQCLESMKTLTDTADLLRKEGFNIDVVTTGG 200
Query: 194 TRDFEL-AIASGATSVRIGSGIF 215
T E A G T ++ GS IF
Sbjct: 201 TGTAEFCATVPGVTELQPGSFIF 223
>gi|290981363|ref|XP_002673400.1| tentative alanine racemase [Naegleria gruberi]
gi|284086983|gb|EFC40656.1| tentative alanine racemase [Naegleria gruberi]
Length = 421
Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 47/248 (18%), Positives = 95/248 (38%), Gaps = 43/248 (17%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSK----MV-DSKKIRVAL-SCGQVIFAENKLQ 59
L+ + +EN+ AK + ++ V K D+ +R FA N+++
Sbjct: 35 NLRNITENVENTVNFAKNYNQDIHVMPVVKANAYGHGDTPVVRELYNELSIKQFAVNRVK 94
Query: 60 EAKKKWIPLRKE-WDVQLRFIGSLQSNKVSEIVSLFDVIETVS-REKTASLLSLEMIKQS 117
E K L KE ++++ +G +V E V+ ++ T+S L E KQ
Sbjct: 95 EGVKIRSNLSKENANIEILVLGYAIPEEVKECVTY-NLTPTISGSRLIVETLFRECEKQD 153
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL-----CRQKYQLNVEGLMC-------IPP 165
+ + V+++V+TG + G P + ++F+ + ++ + G+ + P
Sbjct: 154 KTINVHLKVDTGM--GRFGAHPEKLENFLRWFTINPMKLYNRIKITGVFTHFSSADEMSP 211
Query: 166 AMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI--------------ASGATSVRIG 211
+ FY E+ + + ++S FE + +R G
Sbjct: 212 --DYTREQFYKFMEVKKMIENHQVSRV----FEKPLTYHCCNSAGTLFFPEMHMDMIRPG 265
Query: 212 SGIFGERP 219
I+G P
Sbjct: 266 ISIYGLSP 273
>gi|188584948|ref|YP_001916493.1| alanine racemase [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179349635|gb|ACB83905.1| alanine racemase [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 390
Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 22/133 (16%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
T+ + A LS K + ++ V + + GI P + +FV + L VE
Sbjct: 105 TIYTYEMAEALSQTARKMGKTA--FVHVKIDTGMGRIGIAPENSAEFVKNISKLPSLEVE 162
Query: 159 GLMCIPPAMGNPKPHF--YLLSEIARECKLTKLSMGMTRDFELAIASGAT---------- 206
G+ + ++ + K+ + E+ + A
Sbjct: 163 GVFTHFSVADEEDKTYTQQQINSFEKALKMLE-----DEGIEIPLKHAANSPATIDLPDA 217
Query: 207 ---SVRIGSGIFG 216
VR+G +FG
Sbjct: 218 YFDMVRVGLALFG 230
>gi|189916725|gb|ACE62873.1| conserved hypothetical protein HL [Xylella fastidiosa]
Length = 58
Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKM 36
+ + L +I + R SV+L+ VSK
Sbjct: 23 DIRSNLTKVYSRIIAACQRVNRDPSSVTLLTVSKT 57
>gi|260772717|ref|ZP_05881633.1| predicted amino acid racemase [Vibrio metschnikovii CIP 69.14]
gi|260611856|gb|EEX37059.1| predicted amino acid racemase [Vibrio metschnikovii CIP 69.14]
Length = 356
Score = 51.2 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 23/130 (17%)
Query: 103 EKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG--- 159
+ LS E + + V I V G + G+M DF+ + ++G
Sbjct: 102 IEVIQALSDEAQRTNSDHSVIIMVELG--DLREGVMAKDLVDFIRRIVLLPNIIIKGIGA 159
Query: 160 -LMC---IPPAMGNPKPHFYLLSEIARECK------LTKLSMGMTRDFELAIAS-GAT-- 206
L C I P + +LS +A E + L +S G + + A+A G T
Sbjct: 160 NLACRYGIAPD----EQKMAVLSALADEIEGTFDIHLDIISGGNSASLQWALAHTGETRI 215
Query: 207 -SVRIGSGIF 215
+RIG IF
Sbjct: 216 NHLRIGEAIF 225
>gi|315498295|ref|YP_004087099.1| alanine racemase [Asticcacaulis excentricus CB 48]
gi|315416307|gb|ADU12948.1| alanine racemase [Asticcacaulis excentricus CB 48]
Length = 376
Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 13/137 (9%)
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
+ +I + + + ++ + LP +QV+TG + G MP K
Sbjct: 104 AAEARLIPVLDCPEQLDAWAAVARQRGQTLPALLQVDTGM--SRLGFMPEDLKALATAQE 161
Query: 151 QKYQLNVEGLMCIPPAMGNPK--------PHFYLLSEIARECKLTKLSMGMTRDFELAIA 202
+ L ++ LM P F + S + + L + + L
Sbjct: 162 RLQGLRIDYLMSHLACADEPANPANGQQLEAFEMASRLFPDTPLCFAN---SGGLFLGAE 218
Query: 203 SGATSVRIGSGIFGERP 219
A R G ++G P
Sbjct: 219 YHADLCRPGIALYGAAP 235
>gi|152975352|ref|YP_001374869.1| alanine racemase [Bacillus cereus subsp. cytotoxis NVH 391-98]
gi|152024104|gb|ABS21874.1| alanine racemase [Bacillus cytotoxicus NVH 391-98]
Length = 392
Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 87/242 (35%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK++I N ++++++A K + + + A G A
Sbjct: 17 AIKHNVKEFKKRIHN---------ENITMMAAVKANAYGHGAVEVAKAATEAGVQQLAVA 67
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ E + V + +G + + D++ TV R + S ++ +
Sbjct: 68 FVDEGIE---LREAGVTVPILVLGYTPVEAAQDAIEY-DIMMTVYRIEELSSINEIAKQL 123
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN------- 169
V+++++TG + G+ + F+ ++ + VEG+
Sbjct: 124 QTKARVHVKIDTGM--SRIGLQEEEVAPFLKELQKMNHIEVEGMYTHYSTADELDKTYTN 181
Query: 170 -PKPHFYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A+E + SM ++ F+ VR+G GI+G P
Sbjct: 182 MQTKLFEKAVNTAKELGMPIPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 234
Query: 220 CQ 221
+
Sbjct: 235 SR 236
>gi|51891691|ref|YP_074382.1| putative alanine racemase [Symbiobacterium thermophilum IAM 14863]
gi|51855380|dbj|BAD39538.1| putative alanine racemase [Symbiobacterium thermophilum IAM 14863]
Length = 383
Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/245 (17%), Positives = 73/245 (29%), Gaps = 50/245 (20%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSK--MVDSKKIRVALSCGQ-----------VIF 53
L + A A+R + + L +SK + + I G F
Sbjct: 35 LDAIRNNARTLAEAARR--EGIQLYFMSKQLNRNPQVIAAVAEAGIPRGVAVDIDDARAF 92
Query: 54 AENKLQEAKKKWIPLRKEWDVQLRFIGSL-Q--SNKVSEIVSLFDVIETVSREKTASLLS 110
+E V L +G L Q + +++S + TV A +S
Sbjct: 93 ----------------REAGVALGHVGHLVQIPRAFLPQVLSWRPEVMTVFGLAQARAVS 136
Query: 111 LEMIKQSRFLPVYIQVNTGY--EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI----- 163
+ V ++V +G Q+ GI + + + + V G+
Sbjct: 137 DAAVGLGLRQDVLLRVASGCLYPGQEGGIPLGELPAVALAISRLPGVRVAGVTAFPCLVA 196
Query: 164 ----PPAMGNPKPHFYLLSEIARECKLTKL-----SMGMTRDFELAIASGATSVRIGSGI 214
P A N + + + E + S+ L +GAT G I
Sbjct: 197 EDGRPVATPNLEAVTRAAALLRDELGMEIAQVNAPSLTCAATLALLRQAGATHGEPGHAI 256
Query: 215 FGERP 219
G P
Sbjct: 257 TGTTP 261
>gi|332295096|ref|YP_004437019.1| Alanine racemase [Thermodesulfobium narugense DSM 14796]
gi|332178199|gb|AEE13888.1| Alanine racemase [Thermodesulfobium narugense DSM 14796]
Length = 352
Score = 50.8 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
I + S + +E+ ++V + AS LS K + + V+++V+ G + G+
Sbjct: 76 LIVPIFSREEAELCVEYNVFTAIDSFDMASFLSDIAKKSGKTVGVHVKVDIGM--HRFGV 133
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN--PKPHFYLLSEIARECK 185
P + +F+ + + G+ P N + L I+ + K
Sbjct: 134 KPEELDNFIKQISYLPNIQLMGIFSHFPLGLNLITEEQLILFDRISEKYK 183
>gi|228907821|ref|ZP_04071674.1| Alanine racemase [Bacillus thuringiensis IBL 200]
gi|228851823|gb|EEM96624.1| Alanine racemase [Bacillus thuringiensis IBL 200]
Length = 408
Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 78/237 (32%), Gaps = 37/237 (15%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAENKLQEA 61
L K ++ + + ++A K + + + A+ G A + EA
Sbjct: 32 LNAVKHNVKEFKKHV--NDEEIKMMAAVKANGYGHGAVEVAKAAIEAGINQLAVAFVDEA 89
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ V + +G V +++ DV+ TV R + ++ + +
Sbjct: 90 IE---LREAGITVPILILGYTPVAAVEDVIQY-DVMMTVYRVEDLHGINEIANRLQK--K 143
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--------H 173
V IQV + + G+ + K F+ + + V G+
Sbjct: 144 VQIQVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVVGIFTHYSTADEIDKSYTNMQTSL 203
Query: 174 FYLLSEIARECKLTKL---------SMGMTRDFELAIASGATSVRIGSGIFGERPCQ 221
F A+E + SM ++ F+ VR+G G++G P +
Sbjct: 204 FEKAVNTAKELGIQIPYIHSSNSAGSMELSNAFQ-------NMVRVGIGVYGMYPSK 253
>gi|260829837|ref|XP_002609868.1| hypothetical protein BRAFLDRAFT_90750 [Branchiostoma floridae]
gi|229295230|gb|EEN65878.1| hypothetical protein BRAFLDRAFT_90750 [Branchiostoma floridae]
Length = 348
Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 51/156 (32%), Gaps = 23/156 (14%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG + + + + + V E+ LS + + ++VN G + + G+
Sbjct: 99 IGHSKLLRFATLAHHAKMSLCVDNEENIRELSNIAKDLNVTIGAVVEVNVGQD--RCGVE 156
Query: 139 PN-QTKDFVILCRQKYQLNVEGLMCI--------------PPAMGNPKPHFYLLSEIARE 183
P + L ++ L G+ C + L +
Sbjct: 157 PGPEVPRLAKLVQELPNLTFVGVQCYQGLNQHVRKAADRQAATDTVVEKSKCALKALEDA 216
Query: 184 -CKLTKLSMGMTRDFELAIASGA---TSVRIGSGIF 215
K ++ G T + +G+ T V+ GS +F
Sbjct: 217 GIKCDYVTGGGTGTYLY--EAGSGVFTEVQPGSYVF 250
>gi|332827252|gb|EGK00022.1| hypothetical protein HMPREF9455_03611 [Dysgonomonas gadei ATCC
BAA-286]
Length = 367
Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 16/116 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
V E+ A +S + + L ++I +N G + ++GI P + D V ++++ G
Sbjct: 115 VDNEENAKAISDLCRENNITLNIFIDLNIGMD--RTGIKPEKAIDLVQAIIDLPRIHIAG 172
Query: 160 LMCIPPAMGNPKPH---------FYLLSEIARECK--LTK---LSMGMTRDFELAI 201
L + + F L + +E K L L MG T F + I
Sbjct: 173 LHGYDGHIHDEDTEIRCKKSDISFALAEKAYKEIKPLLPHPIALVMGGTPTFPIHI 228
>gi|297185096|gb|ADI21205.1| hypothetical protein [uncultured gamma proteobacterium EB750_07C09]
Length = 56
Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 186 LTKLSMGMTRDFELAIASGATSVRIGSGIF 215
+ LSMGMT D++ AI GAT VRIG+ F
Sbjct: 1 MXTLSMGMTNDYKAAIIEGATMVRIGNRSF 30
>gi|153938559|ref|YP_001391298.1| alanine racemase domain-containing protein [Clostridium botulinum F
str. Langeland]
gi|152934455|gb|ABS39953.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
F str. Langeland]
gi|295319329|gb|ADF99706.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
F str. 230613]
Length = 355
Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/228 (18%), Positives = 88/228 (38%), Gaps = 28/228 (12%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKK--IRVALSCGQVIFAENKLQEAKK 63
L+ I+ L + V V+K ++K + + G A +A+
Sbjct: 11 NLKNIAHNIKQLIDLC--NMKEIKPVIVTKSFCAEKSVVETIIKEGIKTIA-----DARM 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR-EKTASLLSLEMIKQSRFLPV 122
K + ++ + + + ++VS+++ DV +++ + LS E K ++ +
Sbjct: 64 KNLMKIQDLNCEKLLLRIPMKSEVSKVIEYSDV--SLNSELEIIKELSKEARKVNKIHKI 121
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-------IPPAMGNPKPHFY 175
+ V+ G + G++PN V + L GL + P N
Sbjct: 122 ILMVDLG--DLREGVLPNDALSTVKEIIKLPNLKFIGLGTNLTCYGGVIPDENNLGKLLE 179
Query: 176 LLSEIARECKLT--KLSMGMTRDFEL----AIASGATSVRIG-SGIFG 216
+ ++I +E K+ +S G + + +I G +RIG + I G
Sbjct: 180 IKNQIEKELKIKASIVSGGNSSSLHMIVNDSIPKGINQLRIGEAAILG 227
>gi|189501096|ref|YP_001960566.1| alanine racemase [Chlorobium phaeobacteroides BS1]
gi|189496537|gb|ACE05085.1| alanine racemase [Chlorobium phaeobacteroides BS1]
Length = 371
Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/217 (16%), Positives = 63/217 (29%), Gaps = 35/217 (16%)
Query: 23 RPKDSVSLVAVSK----MVDS---KKIRVALSCGQVIFA-ENKLQEAKKKWIPLRKEWDV 74
R ++AV K D+ KI G F N + LRK+ V
Sbjct: 26 RIPGHCRIMAVVKANAYGHDAAGTSKILE--RLGVRDFGVAN-----IAEAASLRKQLTV 78
Query: 75 QLR-----FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
F L + + T+ + L V+++++TG
Sbjct: 79 SGHSEILAFSSPLPDHIARYLEHDIAA--TICDFNMLRAAESIASAHNVPLKVHVKIDTG 136
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKL 189
+ G P + + L + G+ + ++ + ++
Sbjct: 137 M--GRLGTTPENAFQLLEAAEKSPHLRLSGIYTHFAQSTSRDAFTGRQRDLFTQI-CSEF 193
Query: 190 SMGMTRDF-ELAIASGA---------TSVRIGSGIFG 216
M R F + A SG VR G ++G
Sbjct: 194 EHRMQRTFCKHAANSGGILCHDNAFFDMVRPGIMLYG 230
>gi|229161081|ref|ZP_04289069.1| Alanine racemase [Bacillus cereus R309803]
gi|228622440|gb|EEK79278.1| Alanine racemase [Bacillus cereus R309803]
Length = 408
Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/200 (17%), Positives = 66/200 (33%), Gaps = 30/200 (15%)
Query: 39 SKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE 98
+ + A+ G A + EA + LR+ I S +E +DV+
Sbjct: 67 VEVAKSAIEAGVNQLAVAFVDEAIE----LREAGITVPILILGYTSVAAAEYAIQYDVMM 122
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
TV R + ++ + +IQ+ + + G+ + K F+ + + V
Sbjct: 123 TVYRIEDLQGINEIAQHLQK--KAHIQIKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVV 180
Query: 159 GLMCIPPAMGNPKP--------HFYLLSEIARECKLTKL---------SMGMTRDFELAI 201
G+ F A+E + SM ++ F+
Sbjct: 181 GIFTHYSTADEIDKSYTNMQTSLFEKAVNTAKELGIHISYIHSSNSAGSMELSNTFQ--- 237
Query: 202 ASGATSVRIGSGIFGERPCQ 221
VR+G GI+G P +
Sbjct: 238 ----NMVRVGIGIYGMYPSK 253
>gi|254513257|ref|ZP_05125322.1| metal-activated pyridoxal enzyme [Rhodobacteraceae bacterium KLH11]
gi|221532261|gb|EEE35257.1| metal-activated pyridoxal enzyme [Rhodobacteraceae bacterium KLH11]
Length = 351
Score = 50.4 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 45/128 (35%), Gaps = 8/128 (6%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM-PNQTKDFVILCRQKYQLNVEG 159
+T LS + L V ++ +TG + G+ P Q +D + + G
Sbjct: 109 DNTETVDGLSKSFSDAATPLGVLVECDTG--AARCGVTTPEQARDLARYIDSQPGVTFLG 166
Query: 160 LMCIPPAMGN--PKPHFYLLSEIARECKLT--KLSMGMTRDFELAIASG-ATSVRIGSGI 214
LM PP + E L +S G + A AT RIG+ I
Sbjct: 167 LMTYPPVGQEVAVQEWLTRAKREVEEAGLPVHVVSHGGSPGMWQAQDVPVATEYRIGTYI 226
Query: 215 FGERPCQT 222
+ +R Q
Sbjct: 227 YNDRSLQA 234
>gi|269837824|ref|YP_003320052.1| alanine racemase domain-containing protein [Sphaerobacter
thermophilus DSM 20745]
gi|269787087|gb|ACZ39230.1| alanine racemase domain protein [Sphaerobacter thermophilus DSM
20745]
Length = 370
Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
+G ++ ++ + ++ V A +S + + V ++VN G + + G+
Sbjct: 96 VGPVKIARLVRLARHANLAVAVDDLDNARQISEAAVAAGSTVRVLVEVNVG--MNRCGVE 153
Query: 139 PNQ-TKDFVILCRQKYQLNVEGL 160
P + L+ GL
Sbjct: 154 PGAPAVELAQRVASLPGLHFFGL 176
>gi|293416780|ref|ZP_06659417.1| yhfX protein [Escherichia coli B185]
gi|291431356|gb|EFF04341.1| yhfX protein [Escherichia coli B185]
Length = 387
Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRIQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLIQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L GAT G + G P
Sbjct: 223 KSGIAIEQLNAPSATSCTSLPLLAEYGATHAEPGHALTGTIPA 265
>gi|189916727|gb|ACE62874.1| conserved hypothetical protein HL [Xylella fastidiosa]
Length = 58
Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK 35
+ + L +I + R SV+L+ VSK
Sbjct: 23 DIRSNLTKVYSRIIAACQRVNRDPSSVTLLPVSK 56
>gi|281180412|dbj|BAI56742.1| conserved hypothetical protein [Escherichia coli SE15]
Length = 387
Score = 50.0 bits (119), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 59/163 (36%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++VS+ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVSDAVEQGTDVITVFTLDKAREISAAAVKAGRVQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V + L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIQNLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L + G T G + G P
Sbjct: 223 KSGIAIEQLNAPSATSCTSLPLLVEYGVTHTEPGHALTGTIPA 265
>gi|169334420|ref|ZP_02861613.1| hypothetical protein ANASTE_00820 [Anaerofustis stercorihominis DSM
17244]
gi|169259137|gb|EDS73103.1| hypothetical protein ANASTE_00820 [Anaerofustis stercorihominis DSM
17244]
Length = 352
Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 83/211 (39%), Gaps = 27/211 (12%)
Query: 24 PKDSVSLVAVSKMV---DSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIG 80
K +V + +V+K+ + + G F ++++ K ++W ++L I
Sbjct: 24 DKYNVDITSVTKLHCCNPV-IVDTLMQAGIKKFGDSRIDNLKNIKDIDAEKWLIRLPSI- 81
Query: 81 SLQSNKVSEIVSLFDVIETVSRE-KTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
++ E+V D+ +++ E T L+ E Q++ + + + G ++++
Sbjct: 82 ----SEAEEVVKYSDI--SLNSEYDTVKALNEEAKIQNKVHDILLMFDVG-DLREGYFDK 134
Query: 140 NQTKDFVILCRQKYQLNVEG----LMCIPPAMGNPK--PHFYLLSEIAR---ECKLTKLS 190
D + + + G L C + + + ++E+ L +S
Sbjct: 135 KDIVDSAKRIKNLTNIRLRGVATNLTCYGGVLPDENNLTNLVKVNELLEAELNTNLDIVS 194
Query: 191 MGMTRDFELAIA----SGATSVRIG-SGIFG 216
G + + + G T++RIG + +FG
Sbjct: 195 GGNSTSYTMFREDNPVKGVTNIRIGDTILFG 225
>gi|290473220|ref|YP_003466085.1| hypothetical protein XBJ1_0134 [Xenorhabdus bovienii SS-2004]
gi|289172518|emb|CBJ79285.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004]
Length = 391
Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/173 (19%), Positives = 64/173 (36%), Gaps = 22/173 (12%)
Query: 70 KEWDVQLRFIGSL-QS--NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ + L IG L Q+ + + ++ I TV + A +S K R P+ ++V
Sbjct: 93 SQHGIPLCHIGHLVQTPAHLIETMLKQHPGIITVFSIEKAQAISDAAEKLGRIQPIMLKV 152
Query: 127 ----NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK-----PHFYLL 177
+ Q++GI ++ V + + + + GL P N + P L
Sbjct: 153 FDKRDITLPSQEAGIFFDELDTTVDVLKTMPGIKLSGLTHFPCLEWNARYQTTLPTINLQ 212
Query: 178 SEIARECKLTKLSMGMT----------RDFELAIASGATSVRIGSGIFGERPC 220
+ + +L +L + ++ L GAT + G + G P
Sbjct: 213 TLLRARNRLEQLGIELSQINAPSASSCNTIPLLAKYGATHLEPGHALTGTIPA 265
>gi|228965092|ref|ZP_04126189.1| Alanine racemase [Bacillus thuringiensis serovar sotto str. T04001]
gi|228794636|gb|EEM42145.1| Alanine racemase [Bacillus thuringiensis serovar sotto str. T04001]
Length = 408
Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/200 (17%), Positives = 67/200 (33%), Gaps = 30/200 (15%)
Query: 39 SKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE 98
+ + A+ G A + EA + V + +G V +++ DV+
Sbjct: 67 VEVAKAAIEAGINQLAVAFVDEAIE---LREAGITVPILILGYTPVAAVEDVIQY-DVMM 122
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
TV R + ++ + + V IQV + + G+ + K F+ + + V
Sbjct: 123 TVYRVEDLHGINEIANRLQK--KVQIQVKIDTGMSRIGLQEEEVKPFLEELNRMEYVEVV 180
Query: 159 GLMCIPPAMGNPKP--------HFYLLSEIARECKLTKL---------SMGMTRDFELAI 201
G+ F ARE + S+ ++ F+
Sbjct: 181 GIFTHYSTADEIDKSYTNMQTSLFEKAVNTARELGIQIPYIHSSNSAGSIELSNTFQ--- 237
Query: 202 ASGATSVRIGSGIFGERPCQ 221
VR+G G++G P +
Sbjct: 238 ----NMVRVGIGVYGMYPSK 253
>gi|168184952|ref|ZP_02619616.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
Bf]
gi|237795407|ref|YP_002862959.1| alanine racemase, N-terminal domain-containing protein [Clostridium
botulinum Ba4 str. 657]
gi|182671997|gb|EDT83958.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
Bf]
gi|229262464|gb|ACQ53497.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
Ba4 str. 657]
Length = 355
Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/228 (17%), Positives = 86/228 (37%), Gaps = 28/228 (12%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKK--IRVALSCGQVIFAENKLQEAKK 63
L+ I L + V V+K ++K + + G A+ +++
Sbjct: 11 NLKNIAHNIRQLIDLCNIK--EIKPVIVTKSFCAEKLVVETIIKEGIKTIADARMKNLM- 67
Query: 64 KWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ ++ +++ ++V++++ D I S + LS E K ++ +
Sbjct: 68 KIQDLKCEKLLLRIPM-----KSEVTKVIEYSD-ISLNSELEIIKELSKEARKVNKIHKI 121
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-------IPPAMGNPKPHFY 175
+ V+ G + G++P V + L GL + P N
Sbjct: 122 ILMVDLG--DLREGVLPKDALATVKEIIKLPNLKFIGLGTNLTCYGGVIPDENNLGKLLE 179
Query: 176 LLSEIARECKLT--KLSMGMTRDFEL----AIASGATSVRIG-SGIFG 216
+ ++I +E K+ +S G + + +I G +RIG + I G
Sbjct: 180 IKNQIEKELKIKVSIVSGGNSSSLHMIVNDSIPKGINQLRIGEAAILG 227
>gi|168179682|ref|ZP_02614346.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
NCTC 2916]
gi|182669231|gb|EDT81207.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
NCTC 2916]
Length = 355
Score = 49.6 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/228 (17%), Positives = 86/228 (37%), Gaps = 28/228 (12%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKK--IRVALSCGQVIFAENKLQEAKK 63
L+ I L + V V+K ++K + + G A+ +++
Sbjct: 11 NLKNIAHNIRQLIDLCNIK--EIKPVIVTKSFCAEKLVVETIIKEGIKTIADARMKNLM- 67
Query: 64 KWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ ++ +++ ++V++++ D I S + LS E K ++ +
Sbjct: 68 KIQDLKCEKLLLRIPM-----KSEVTKVIEYSD-ISLNSELEIIKELSKEARKVNKIHKI 121
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-------IPPAMGNPKPHFY 175
+ V+ G + G++P V + L GL + P N
Sbjct: 122 ILMVDLG--DLREGVLPKDALATVKEIIKLPNLKFIGLGTNLTCYGGVIPDENNLGKLLE 179
Query: 176 LLSEIARECKLT--KLSMGMTRDFEL----AIASGATSVRIG-SGIFG 216
+ ++I +E K+ +S G + + +I G +RIG + I G
Sbjct: 180 IKNQIEKELKIKVSIVSGGNSSSLHMIVNDSIPKGINQLRIGEAAILG 227
>gi|332982730|ref|YP_004464171.1| alanine racemase [Mahella australiensis 50-1 BON]
gi|332700408|gb|AEE97349.1| alanine racemase [Mahella australiensis 50-1 BON]
Length = 376
Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 43/235 (18%), Positives = 80/235 (34%), Gaps = 34/235 (14%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRV-ALSCGQVIFAEN 56
+ + ++ I D +AV K + ++ A+ G
Sbjct: 16 DIAYNIAQLRRCI----------GDDTLFMAVVKADGYGHGAYRVAQTAIDAGARWLG-- 63
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ A++ K D + +G + + E+V+ + +TV A LS +KQ
Sbjct: 64 -VAIAEEGAELRDKGIDAPILVLGGIMPYEAEEVVAS-GLCQTVFSLDVAKALSDASVKQ 121
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF- 174
+ V+I+V+TG + G+ P + + + +N+ G+ F
Sbjct: 122 GKSADVHIKVDTGM--GRVGVRPGLELEQLIEGLVGLPGINITGMFTHFAESDACDKSFT 179
Query: 175 -YLLSEIARECKLTKLSMGMTRDFELAIASGA---------TSVRIGSGIFGERP 219
Y +S + K M + A S A VR G I+G P
Sbjct: 180 KYQMSLFVQAINQAKA-MNVGPLILHAANSAAVIDYTDAHFNMVRGGISIYGYYP 233
>gi|225389331|ref|ZP_03759055.1| hypothetical protein CLOSTASPAR_03078 [Clostridium asparagiforme
DSM 15981]
gi|225044611|gb|EEG54857.1| hypothetical protein CLOSTASPAR_03078 [Clostridium asparagiforme
DSM 15981]
Length = 253
Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 24/127 (18%)
Query: 109 LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVEGLM---CIP 164
+ + V I++ G E +SG++ + + + ++++G+
Sbjct: 1 IERAFAGAPKPARVLIEIEVGEE--RSGVIEEADYLELLEYLKGCRNISLKGIFSHDGNS 58
Query: 165 PAMGNPKPHFY----------LLSEIARECKLT--KLSMG----MTRDFELAIASGATSV 208
+ + +E+A+E + +S+G M DF I G T +
Sbjct: 59 YQAADIQECREIHLTAQRRTLRFAELAKEAGMELETVSIGSTPSMMHDFP--ILDGVTEI 116
Query: 209 RIGSGIF 215
R G+ IF
Sbjct: 117 RPGTYIF 123
>gi|15891036|ref|NP_356708.1| hypothetical protein Atu3927 [Agrobacterium tumefaciens str. C58]
gi|15159365|gb|AAK89493.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 362
Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/196 (18%), Positives = 70/196 (35%), Gaps = 19/196 (9%)
Query: 35 KMVDSKKI-RVALSCGQVIFAEN--KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV 91
K I + L G N K+ EA+ ++ + +G+ + +++ +
Sbjct: 50 KTHKIPAIAKQQLQAG--AIGINCQKVSEAEVFADAGFEDILITYNILGAAKLSRLKALN 107
Query: 92 SLFDVIETV-SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILC 149
+ + V T + L+ R L V ++ +TG ++ G+ P
Sbjct: 108 ARIGRLSVVADSAVTIAGLADTFDAA-RPLAVLVECDTGG--KRCGVQTPEAALALAEQI 164
Query: 150 RQKYQLNVEGLMCIPPAMGNP------KPHFYLLSEIARECKLTKLSMGMTRDFELA-IA 202
L G++ P G + LL+ + S G + DF A +
Sbjct: 165 VSASGLIFRGILTYPAPGGAEMVEKFIRETMALLAT--KGIDCPVRSSGGSPDFYSAHLV 222
Query: 203 SGATSVRIGSGIFGER 218
+ AT R G+ I+ +R
Sbjct: 223 ASATEHRAGTYIYNDR 238
>gi|322806239|emb|CBZ03807.1| putative cytoplasmic protein [Clostridium botulinum H04402 065]
Length = 355
Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats.
Identities = 41/228 (17%), Positives = 87/228 (38%), Gaps = 28/228 (12%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKK--IRVALSCGQVIFAENKLQEAKK 63
L+ I+ L + V V+K ++K + + G A+ +++
Sbjct: 11 NLKNIAHNIKQLIDLCNIK--EIKPVIVTKSFCAEKSVVETIIKEGIKTIADARMKNLM- 67
Query: 64 KWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ ++ +++ ++V++++ D I S + LS E K ++ +
Sbjct: 68 KIQDLKCEKLLLRIPM-----KSEVTKVIEYSD-ISLNSELEIIKELSKEARKVNKIHKI 121
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-------IPPAMGNPKPHFY 175
+ V+ G + G++P V + L GL + P N
Sbjct: 122 ILMVDLG--DLREGVLPKDALSTVKEIIKLPNLKFIGLGTNLTCYGGVIPDENNLGKLLE 179
Query: 176 LLSEIARECKLT--KLSMGMTRDFEL----AIASGATSVRIGSG-IFG 216
+ ++I +E K+ +S G + + + +I G +RIG I G
Sbjct: 180 IKNQIEKELKIKVSIVSGGNSSNLHMIVNDSIPKGINQLRIGEAVILG 227
>gi|229102703|ref|ZP_04233403.1| Alanine racemase [Bacillus cereus Rock3-28]
gi|228680711|gb|EEL34888.1| Alanine racemase [Bacillus cereus Rock3-28]
Length = 408
Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 26/145 (17%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY 153
+DV+ TV R + ++ + IQV + + G+ + K F+ +
Sbjct: 118 YDVMMTVYRIEDLQGINEIAQRLQNKAR--IQVKIDTGMSRIGLQEEEVKPFLEELNRME 175
Query: 154 QLNVEGLMCIPPAMGNPKP--------HFYLLSEIARECKLTKL---------SMGMTRD 196
+ V G+ F A E + SM ++
Sbjct: 176 YVEVVGMFTHYSTADEIDKSYTNMQTSLFEKAVNTANELGMQIPYIHSSNSAGSMELSNT 235
Query: 197 FELAIASGATSVRIGSGIFGERPCQ 221
F+ VR+G G++G P +
Sbjct: 236 FQ-------NMVRVGIGVYGMYPSK 253
>gi|298242855|ref|ZP_06966662.1| alanine racemase domain protein [Ktedonobacter racemifer DSM 44963]
gi|297555909|gb|EFH89773.1| alanine racemase domain protein [Ktedonobacter racemifer DSM 44963]
Length = 370
Score = 48.9 bits (116), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 18/156 (11%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG ++ + + + +I V EK LS + L ++V + ++G+
Sbjct: 91 IGPEKALRAARLAQHCRLIVGVESEKGVQQLSEAASQIGSTL--LVRVEIDSGLGRTGVG 148
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIP----PAMGNPKPHF------YLLSEIARECK--- 185
L+++G+ P + P ++ IA +
Sbjct: 149 QEAAGKLCRQVLDAPGLSLDGIFTFRGASFPEASSRDPQILGRLEGEMMVAIAERLRRAG 208
Query: 186 --LTKLSMGMTRDFELAIAS-GATSVRIGSGIFGER 218
+ ++S+G T A G T VR G+ +F +R
Sbjct: 209 IPIQEISVGSTPTATSAAEVPGITEVRPGTYVFFDR 244
>gi|332716644|ref|YP_004444110.1| alanine racemase [Agrobacterium sp. H13-3]
gi|325063329|gb|ADY67019.1| alanine racemase [Agrobacterium sp. H13-3]
Length = 362
Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/196 (18%), Positives = 72/196 (36%), Gaps = 19/196 (9%)
Query: 35 KMVDSKKI-RVALSCGQVIFAEN--KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV 91
K I + L G N K+ EA+ + + +G + +++ +
Sbjct: 50 KTHKIPAIAKQQLQAG--AIGINCQKVSEAEVFADAGFDDILITYNILGVAKLSRLRALN 107
Query: 92 SLFDVIETV-SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILC 149
+ + V T + L+ + R L V ++ +TG ++ G+ P+
Sbjct: 108 ARIGQLSVVADSAVTIAGLAGTFDAE-RPLSVLVECDTGG--KRCGVQTPDAVLQLAEKI 164
Query: 150 RQKYQLNVEGLMCIPPAMGNP------KPHFYLLSEIARECKLTKLSMGMTRDFELA-IA 202
LN +G++ P G + LL+E + S G + DF A +
Sbjct: 165 VAAPGLNFKGILTYPAPGGAEKVENFIRETMALLAE--KGIDCPVRSSGGSPDFFSAHLV 222
Query: 203 SGATSVRIGSGIFGER 218
AT R G+ ++ +R
Sbjct: 223 PSATEYRAGTYVYNDR 238
>gi|220926980|ref|YP_002502282.1| alanine racemase domain-containing protein [Methylobacterium
nodulans ORS 2060]
gi|219951587|gb|ACL61979.1| alanine racemase domain protein [Methylobacterium nodulans ORS
2060]
Length = 359
Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 42/231 (18%), Positives = 75/231 (32%), Gaps = 35/231 (15%)
Query: 7 LQVFKQKIEN------SAILAKRPKDSVSLVAVSKMV-DSKKIRVALSCGQV-----IFA 54
L ++ I +A LA RP K R+ G
Sbjct: 21 LDQVERNIARLQAACDAAGLANRPHI--------KTHKSPVLARLQQEAGARGLTCQTLG 72
Query: 55 ENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
E A+ + + +G + +++ ++ + + L
Sbjct: 73 E-----AEVMAEAGLSDILISYNLVGPEKLERLARLLRRMPLTVSADHPAVVEGLGEAAA 127
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIM-PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH 173
R L V ++ +TG ++G+ P + + L GL+ PP G
Sbjct: 128 AAERPLDVVVECDTGR--ARAGVATPAEAVALARMIAGTPALRFAGLLLYPPEDGVQATQ 185
Query: 174 FYLLSEIA----RECKLTKLSMGMTRDFEL--AIASGATSVRIGSGIFGER 218
+L + A + +S G T + + AI GAT R G+ IF +R
Sbjct: 186 GFLDAVQAGLAGEGLQARIVSTGGTPNLKHLGAIR-GATEHRAGTFIFNDR 235
>gi|291220866|ref|XP_002730436.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length = 357
Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 4/124 (3%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G + +++ + S + V + +S Q + V ++VN ++ + G+ P
Sbjct: 108 GKTKLKRLASLASKARIGVCVDSIENLRQVSAAAKDQQTNIDVLVEVNL--KMYRCGVEP 165
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFEL 199
++ V+L ++ + GL C + + + A + + + +
Sbjct: 166 DEVVPLVLLAKELPNITFVGLQCYAGRNQHIRE--SAMRSFASHDAMDIAKIAIKNLSDA 223
Query: 200 AIAS 203
I
Sbjct: 224 GIEC 227
>gi|226949272|ref|YP_002804363.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
A2 str. Kyoto]
gi|226843119|gb|ACO85785.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
A2 str. Kyoto]
Length = 355
Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 41/228 (17%), Positives = 86/228 (37%), Gaps = 28/228 (12%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKK--IRVALSCGQVIFAENKLQEAKK 63
L+ I+ L + V V+K ++K + + G A+ +++
Sbjct: 11 NLKNIAHNIKQLIDLCNIK--EIKPVIVTKSFCAEKSVVETIIKEGIKTIADARMKNLM- 67
Query: 64 KWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ ++ +++ ++V++++ D I S + LS E K ++ +
Sbjct: 68 KIQDLKCEKLLLRIPM-----KSEVTKVIEYSD-ISLNSELEIIKELSKEARKVNKIHKI 121
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-------IPPAMGNPKPHFY 175
+ V+ G + G++P V + L GL + P N
Sbjct: 122 ILMVDLG--DLREGVLPKDALSTVKEIIKLPNLKFIGLGTNLTCYGGVIPDENNLGKLLE 179
Query: 176 LLSEIARECKLT--KLSMGMTRDFEL----AIASGATSVRIGSG-IFG 216
+ ++I +E K+ +S G + + +I G +RIG I G
Sbjct: 180 IKNQIEKELKIKVSIVSGGNSSSLHMIVNDSIPKGINQLRIGEAVILG 227
>gi|254430666|ref|ZP_05044369.1| amino acid racemase [Cyanobium sp. PCC 7001]
gi|197625119|gb|EDY37678.1| amino acid racemase [Cyanobium sp. PCC 7001]
Length = 369
Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 44/227 (19%), Positives = 83/227 (36%), Gaps = 29/227 (12%)
Query: 6 KLQVFKQKIENSAILAKR-PKDSVSLVAVSKMVD--SKKIRVALSCGQVIFAENKLQ--E 60
L N+ L +R + +++ VSK V + +R L+ G E++L E
Sbjct: 9 NLSHLHH---NARTLVRRLARQGIAVTGVSKAVLGMPEIVRTWLAAGLGSIGESRLDTAE 65
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
A R L I + ++V+ +V+ I + + L++ KQ R
Sbjct: 66 ALA-----RGGLQAPLLMIRTPMLSQVARVVAHAA-ISCNTEPRVLEALAVAARKQGRRH 119
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V + V G + GI+P + L L + G+ P ++E+
Sbjct: 120 GVLLMVELG--DLREGILPGDLERIAQLTLALPSLQLVGIGSNLGCQHGVAPDAANMAEL 177
Query: 181 AR-----ECKLTK----LSMGMTRDFELAIASGA----TSVRIGSGI 214
+ E +L+ +S G + + GA +R+G +
Sbjct: 178 SELAETLEARLSTRLQLISGGNSANLPWLAQGGAPGRINHLRLGEAL 224
>gi|254429781|ref|ZP_05043488.1| Alanine racemase, N-terminal domain family [Alcanivorax sp. DG881]
gi|196195950|gb|EDX90909.1| Alanine racemase, N-terminal domain family [Alcanivorax sp. DG881]
Length = 362
Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 15/126 (11%)
Query: 103 EKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC 162
LS + R + + V G + GI+P + L + G+
Sbjct: 102 LSVVRRLSAAAEEAERSHGIMLMVELG--DLREGILPEDLVSAAREVMRLPNLELTGIGT 159
Query: 163 -------IPPAMGNPKPHFYLLSEIAREC--KLTKLSMGMTRDFELAIASGAT----SVR 209
+ P N L + E KL +S G + + + A+++ AT +R
Sbjct: 160 NLACHSGMAPDADNMGALSALADRVEAELDVKLALISGGNSANLDWALSNSATGRINHLR 219
Query: 210 IGSGIF 215
+G IF
Sbjct: 220 LGEAIF 225
>gi|170758708|ref|YP_001787366.1| alanine racemase domain-containing protein [Clostridium botulinum
A3 str. Loch Maree]
gi|169405697|gb|ACA54108.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
A3 str. Loch Maree]
Length = 355
Score = 48.9 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 87/229 (37%), Gaps = 30/229 (13%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKK--IRVALSCGQVIFAENKLQEAKK 63
L+ I L + V V+K ++K + + G A+ +++
Sbjct: 11 NLKNIAHNIRQLIDLC--NMKEIKPVIVTKSFCAEKLVVETIIKEGIKTIADARMKNLM- 67
Query: 64 KWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR-EKTASLLSLEMIKQSRFLP 121
K L+ ++ +++ ++VS+++ DV +++ + LS E K ++
Sbjct: 68 KIQDLKCEKLLLRIPM-----KSEVSKVIEYSDV--SLNSELEIIKELSKEARKVNKIHK 120
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-------IPPAMGNPKPHF 174
+ + V+ G + G++P V + L GL + P N
Sbjct: 121 IILMVDLG--DLREGVLPKDALSTVKEIIKLPNLKFIGLGTNLTCYGGVIPDENNLGKLL 178
Query: 175 YLLSEIARECKLT--KLSMGMTRDFELAIA----SGATSVRIG-SGIFG 216
+ ++I +E K+ +S G + + + G +RIG + I G
Sbjct: 179 EIKNQIEKELKIKVSIVSGGNSSSLHIIVNDSMPKGVNQLRIGEAAILG 227
>gi|302390371|ref|YP_003826192.1| alanine racemase domain protein [Thermosediminibacter oceani DSM
16646]
gi|302200999|gb|ADL08569.1| alanine racemase domain protein [Thermosediminibacter oceani DSM
16646]
Length = 372
Score = 48.9 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 21/151 (13%)
Query: 84 SNKVSEIVSLFD---VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+ ++ L +I ++ + A ++ + + L I +++G +++ G++P
Sbjct: 88 RQNLKRVIRLAQKARIILSIDCVEVAREINSALEENGVELEYLIIIDSG--LRRFGVLPE 145
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPA----------MGNPKPHFYLLSEIA-----RECK 185
L + G+ P + L A K
Sbjct: 146 DAAGLARELAALKTLKLVGIATHPGHVYGASGPEKVDEIARQEVDALRTAAGILEKEGFK 205
Query: 186 LTKLSMGMTRDFELAIA-SGATSVRIGSGIF 215
+ ++ G T F A+ +R G+ +F
Sbjct: 206 VEIVATGSTPTFRYAVKDERINVLRPGNYVF 236
>gi|293606155|ref|ZP_06688519.1| alanine racemase domain protein [Achromobacter piechaudii ATCC
43553]
gi|292815415|gb|EFF74532.1| alanine racemase domain protein [Achromobacter piechaudii ATCC
43553]
Length = 384
Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 19/133 (14%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN-VE 158
V + A L+ + +P I+++ ++G+ P + V + R ++ + +
Sbjct: 114 VDSLEAARALAAHVQMAGAAIPALIEIDCDG--HRAGVQPGNAEQLVAIARVLHEAHSLR 171
Query: 159 GLMC-------------IPPAMGNPKPHFYLLSEIARECKL--TKLSMGMTRDFELA-IA 202
G+M I + +E R L + +S+G T A
Sbjct: 172 GVMTHAGESYACRSVEAIADMAEQERAAAVSCAETIRGAGLPCSVVSVGSTPTAHFARSL 231
Query: 203 SGATSVRIGSGIF 215
G T VR G +F
Sbjct: 232 EGVTEVRAGVYVF 244
>gi|218961188|ref|YP_001740963.1| Alanine racemase (partial match, alr-like) [Candidatus Cloacamonas
acidaminovorans]
gi|167729845|emb|CAO80757.1| Alanine racemase (partial match, alr-like) [Candidatus Cloacamonas
acidaminovorans]
Length = 629
Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 9/142 (6%)
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
N+++ I+ D+ VS A L+ +++ V+++V+TG +SGI+ +
Sbjct: 89 PCLKNEINTILDN-DLAVNVSSLDFARALNKTAKTKNKQAVVHLKVDTGM--HRSGILDS 145
Query: 141 QTKDFVILCRQKYQLNVEGLMC-IPPAMGNPK---PHFYLLSEIARECKL--TKLSMGMT 194
+ DF + L +EG+ A +P+ I T L + +
Sbjct: 146 EFIDFFNKIAKMDNLLIEGVFTHFASAENDPEFSKQQEERFWNIIDNLPFTPTYLHIDNS 205
Query: 195 RDFELAIASGATSVRIGSGIFG 216
+ + VR+G +G
Sbjct: 206 NALVNGLGKHSNLVRLGIMAYG 227
>gi|170684172|ref|YP_001745624.1| alanine racemase [Escherichia coli SMS-3-5]
gi|300937328|ref|ZP_07152168.1| alanine racemase protein [Escherichia coli MS 21-1]
gi|170521890|gb|ACB20068.1| alanine racemase family [Escherichia coli SMS-3-5]
gi|300457611|gb|EFK21104.1| alanine racemase protein [Escherichia coli MS 21-1]
Length = 387
Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 19/141 (13%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQ 154
TV A +S +K R V ++V + + Q+SG + V +
Sbjct: 125 TVFTLDKAREVSAAALKTGRVQSVLLKVYSDDDFLYPGQESGFALQVLPEIVAEIQNLPG 184
Query: 155 LNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC--------KLTKLSMGMTRDFEL 199
L++ GL P + + P P+ + L + + +L S L
Sbjct: 185 LHLAGLTHFPCLLWDEAVGKVLPTPNLHTLVQARDQLAKSGIAIEQLNAPSATSCTSLPL 244
Query: 200 AIASGATSVRIGSGIFGERPC 220
G T G + G P
Sbjct: 245 LAEYGVTHAEPGHALTGTIPA 265
>gi|238753903|ref|ZP_04615263.1| hypothetical protein yruck0001_6750 [Yersinia ruckeri ATCC 29473]
gi|238707891|gb|EEQ00249.1| hypothetical protein yruck0001_6750 [Yersinia ruckeri ATCC 29473]
Length = 390
Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 12/121 (9%)
Query: 64 KWIPLRKEWDVQLRFIGSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + + + + IG L Q S + EI+S + TV + A +++ KQ++
Sbjct: 93 KEVQQLYRYGIPVAHIGHLVQPPSGMLDEIISQQPEVITVFSLEKAQQIAVAAHKQNKIQ 152
Query: 121 PVYIQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQLNVEGL-----MCIPPAMGNPK 171
P+ ++V + Q+ G Q D + + + G+ M P + +
Sbjct: 153 PILLKVGQTNDLLYAGQEGGFELQQLPDIIQAIAAMPSIKLVGVTHFPCMLFDPQLQRTR 212
Query: 172 P 172
P
Sbjct: 213 P 213
>gi|189425818|ref|YP_001952995.1| alanine racemase [Geobacter lovleyi SZ]
gi|189422077|gb|ACD96475.1| alanine racemase [Geobacter lovleyi SZ]
Length = 380
Score = 48.5 bits (115), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/203 (16%), Positives = 65/203 (32%), Gaps = 33/203 (16%)
Query: 33 VSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS 92
VSK G F + + + D + +G + + + V
Sbjct: 49 VSK--------ELERQGVDAFG---VAFLAEAIQLRKAGIDKPVLLLGGIYPGQERKCVG 97
Query: 93 LFDVIET-VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
I + V + L L K R V+++V+TG + GI +Q + +
Sbjct: 98 Y--GISSAVFSLEQLKALDLAAGKLYRKALVHLKVDTGM--GRLGIPYDQVPALLNALKL 153
Query: 152 KYQLNVEGL---MCIPPAMGNPKPHFYLLSEIARECKLTKLSM---GMTRDF-ELAIASG 204
+ +EG+ + +F L + G + + +A ++G
Sbjct: 154 LPNIYLEGVISHFASADELDESGQYFTRLQ--GERFGWAVEQIRKAGFSPRYIHIANSAG 211
Query: 205 A--------TSVRIGSGIFGERP 219
A VR G ++G P
Sbjct: 212 ALLNDYPFCNLVRPGIALYGALP 234
>gi|218702124|ref|YP_002409753.1| putative amino acid racemase [Escherichia coli IAI39]
gi|218372110|emb|CAR19972.1| putative amino acid racemase [Escherichia coli IAI39]
Length = 387
Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 19/141 (13%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQ 154
TV A +S +K R V ++V + + Q+SG + V +
Sbjct: 125 TVFTLDKAREVSAAALKTGRVQSVLLKVYSDDDFLYPGQESGFALQVLPEIVAEIQNLPG 184
Query: 155 LNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC--------KLTKLSMGMTRDFEL 199
L++ GL P + + P P+ + L + + +L S L
Sbjct: 185 LHLAGLTHFPCLLWDEAVGKVLPTPNLHTLVQARDQLAKSGIAIEQLNAPSATSCTSLPL 244
Query: 200 AIASGATSVRIGSGIFGERPC 220
G T G + G P
Sbjct: 245 LAEYGVTHAEPGHALTGTIPA 265
>gi|294102773|ref|YP_003554631.1| alanine racemase domain protein [Aminobacterium colombiense DSM
12261]
gi|293617753|gb|ADE57907.1| alanine racemase domain protein [Aminobacterium colombiense DSM
12261]
Length = 377
Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 61/153 (39%), Gaps = 19/153 (12%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-M 138
G ++ +++ + + V +L+ +SR + + I V+TGY ++G+
Sbjct: 98 GDIKMDRLLALARKTTLAVGVDHPDHVKMLAETFDGESRPMEIMIDVDTGY--HRTGVGS 155
Query: 139 PNQTKDFVILCRQKYQLNVEGLMC-------------IPPAMGNPKPHFYLLSEIARE-- 183
+ + L R + L + G+ + + + ++E R+
Sbjct: 156 KEEILELAKLIRYRDSLKLRGIFTHDGNCYNATTISEVRSISQSSQNMMLEMAEFLRKEG 215
Query: 184 CKLTKLSMGMTRDFEL-AIASGATSVRIGSGIF 215
+ ++S+G T + I G T +R G+ +F
Sbjct: 216 IGVEEISIGSTPSLLVSEIMQGITEIRPGTYVF 248
>gi|83591803|ref|YP_425555.1| alanine racemase-like [Rhodospirillum rubrum ATCC 11170]
gi|83574717|gb|ABC21268.1| Alanine racemase-like [Rhodospirillum rubrum ATCC 11170]
Length = 356
Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 39/124 (31%), Gaps = 8/124 (6%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEG 159
L + L V ++ +TG + G+ P L G
Sbjct: 113 DSLAVIDGLGAAFADSTTPLGVLVECDTG--AGRCGVASPAAALALAQSIHASAGLRFRG 170
Query: 160 LMCIPPAMGNPKPHF--YLLSEIARECKL--TKLSMGMTRDFELAIASG-ATSVRIGSGI 214
LM PP G + E L LS G + D A A G T R G+ I
Sbjct: 171 LMTYPPTGGAEAADRFLAEAKALIEEAGLGVEILSSGGSPDMMAAGAGGVVTEYRAGTYI 230
Query: 215 FGER 218
+ +R
Sbjct: 231 YMDR 234
>gi|52081132|ref|YP_079923.1| putative alanine racemase [Bacillus licheniformis ATCC 14580]
gi|52786510|ref|YP_092339.1| hypothetical protein BLi02775 [Bacillus licheniformis ATCC 14580]
gi|319644904|ref|ZP_07999137.1| hypothetical protein HMPREF1012_00170 [Bacillus sp. BT1B_CT2]
gi|52004343|gb|AAU24285.1| putative alanine racemase [Bacillus licheniformis ATCC 14580]
gi|52349012|gb|AAU41646.1| putative protein [Bacillus licheniformis ATCC 14580]
gi|317392713|gb|EFV73507.1| hypothetical protein HMPREF1012_00170 [Bacillus sp. BT1B_CT2]
Length = 368
Score = 48.5 bits (115), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 57/156 (36%), Gaps = 22/156 (14%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI- 137
+G + ++ ++ D+ + + S+ V +++ G Q+SGI
Sbjct: 86 VGKSKLERIRKLSETIDISFGIDSAYQVREIEEVFEGASKKAQVLVEIEVG--EQRSGII 143
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP----------------HFYLLSEIA 181
+ + + L + + ++G+ K HF ++E
Sbjct: 144 EEDDFRTLLELIKTCQNVELKGIFSHDGHSYKAKSVAHCKELYKESVERTLHFARIAE-E 202
Query: 182 RECKLTKLSMGMTR--DFELAIASGATSVRIGSGIF 215
+ K +S+G T F+ I G T +R G+ IF
Sbjct: 203 MDLKPKVVSIGSTPPFMFKFDIPEGVTEIRPGTYIF 238
>gi|157162856|ref|YP_001460174.1| alanine racemase [Escherichia coli HS]
gi|157068536|gb|ABV07791.1| alanine racemase family [Escherichia coli HS]
Length = 387
Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 56/163 (34%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRIQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + V + L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFALKVLPEIVAEIQNLPGLHLAGLTHFPCLLWDEAVGKVLPTPNLHTLIQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIALEQLNAPSATSCTSLPLLAQYGVTHAEPGHALTGTIPA 265
>gi|312972358|ref|ZP_07786532.1| alanine racemase domain protein [Escherichia coli 1827-70]
gi|309703792|emb|CBJ03133.1| alanine racemase like protein [Escherichia coli ETEC H10407]
gi|310334735|gb|EFQ00940.1| alanine racemase domain protein [Escherichia coli 1827-70]
gi|323934629|gb|EGB31029.1| alanine racemase domain-containing protein [Escherichia coli E1520]
Length = 387
Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 56/163 (34%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRIQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + V + L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFALKVLPEIVAEIQNLPGLHLAGLTHFPCLLWDEAVGKVLPTPNLHTLIQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIALEQLNAPSATSCTSLPLLAQYGVTHAEPGHALTGTIPA 265
>gi|297172025|gb|ADI23009.1| predicted amino acid aldolase or racemase [uncultured
Planctomycetales bacterium HF0500_40D21]
gi|297183364|gb|ADI19499.1| predicted amino acid aldolase or racemase [uncultured
Planctomycetales bacterium HF0500_40D21]
Length = 367
Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 19/154 (12%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
+G+ + +V+ + D I + A L+ + V +++N G + + G++
Sbjct: 94 VGAPKVQRVARLCETADPIIALDHFAQAQPLAAACHEAGVTCRVILEINVGLD--RVGVL 151
Query: 139 PN-QTKDFVILCRQKYQLNVEGLMCIPPA---MGNP-------KPHFYLLSEIARECK-- 185
P + Q L + G+M + +P LL E +
Sbjct: 152 PGRDAIELARATAQLDGLQLVGIMGYEGHLLRVEDPDEKRTLINASMRLLEETRDAMRDE 211
Query: 186 ---LTKLSMGMTRDFELAIASGA-TSVRIGSGIF 215
+S G T ++ A T ++ G GIF
Sbjct: 212 GLCCDIVSAGGTGSYQFTSDCPAITELQAGGGIF 245
>gi|170755191|ref|YP_001781537.1| alanine racemase domain-containing protein [Clostridium botulinum
B1 str. Okra]
gi|169120403|gb|ACA44239.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
B1 str. Okra]
Length = 355
Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 42/228 (18%), Positives = 87/228 (38%), Gaps = 28/228 (12%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKK--IRVALSCGQVIFAENKLQEAKK 63
L+ I+ L + V V+K ++K + + G A +A+
Sbjct: 11 NLKNIAHNIKQLIDLCNIK--EIKPVIVTKSFCAEKSVVETIIKEGIKTIA-----DARM 63
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR-EKTASLLSLEMIKQSRFLPV 122
K + + + + + ++VS+++ DV +++ + LS E K ++ +
Sbjct: 64 KNLMKIQGLNCEKLLLRIPMKSEVSKVIEYSDV--SLNSELEIIKELSKEARKVNKIHKI 121
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG----LMCIPPAMGNPKPHFYLL- 177
+ V+ G + G++P V + L G L C + + LL
Sbjct: 122 ILMVDLG--DLREGVLPKDALSAVKEIIKLPNLKFIGLGTNLTCYGGVLPDENNLGKLLE 179
Query: 178 --SEIARECKLT--KLSMGMTRDFEL----AIASGATSVRIG-SGIFG 216
++I +E K+ +S G + + +I G +RIG + I G
Sbjct: 180 IKNQIEKELKIKVSIVSGGNSSSLHMIVNDSIPKGINQLRIGEAAILG 227
>gi|16131259|ref|NP_417840.1| predicted amino acid racemase [Escherichia coli str. K-12 substr.
MG1655]
gi|89110629|ref|AP_004409.1| predicted amino acid racemase [Escherichia coli str. K-12 substr.
W3110]
gi|170082898|ref|YP_001732218.1| amino acid racemase [Escherichia coli str. K-12 substr. DH10B]
gi|188491776|ref|ZP_02999046.1| alanine racemase family [Escherichia coli 53638]
gi|238902472|ref|YP_002928268.1| putative amino acid racemase [Escherichia coli BW2952]
gi|256025892|ref|ZP_05439757.1| putative amino acid racemase [Escherichia sp. 4_1_40B]
gi|300919344|ref|ZP_07135854.1| alanine racemase protein [Escherichia coli MS 115-1]
gi|300946881|ref|ZP_07161121.1| alanine racemase protein [Escherichia coli MS 116-1]
gi|300957844|ref|ZP_07170021.1| alanine racemase protein [Escherichia coli MS 175-1]
gi|301023165|ref|ZP_07186967.1| alanine racemase protein [Escherichia coli MS 196-1]
gi|301645815|ref|ZP_07245731.1| alanine racemase protein [Escherichia coli MS 146-1]
gi|307140065|ref|ZP_07499421.1| putative amino acid racemase [Escherichia coli H736]
gi|331644080|ref|ZP_08345209.1| alanine racemase, N- domain protein [Escherichia coli H736]
gi|1176261|sp|P45550|YHFX_ECOLI RecName: Full=Uncharacterized protein yhfX
gi|606315|gb|AAA58178.1| ORF_f387 [Escherichia coli str. K-12 substr. MG1655]
gi|1789782|gb|AAC76406.1| predicted amino acid racemase [Escherichia coli str. K-12 substr.
MG1655]
gi|85676660|dbj|BAE77910.1| predicted amino acid racemase [Escherichia coli str. K12 substr.
W3110]
gi|169890733|gb|ACB04440.1| predicted amino acid racemase [Escherichia coli str. K-12 substr.
DH10B]
gi|188486975|gb|EDU62078.1| alanine racemase family [Escherichia coli 53638]
gi|238862150|gb|ACR64148.1| predicted amino acid racemase [Escherichia coli BW2952]
gi|260447600|gb|ACX38022.1| alanine racemase domain protein [Escherichia coli DH1]
gi|299880951|gb|EFI89162.1| alanine racemase protein [Escherichia coli MS 196-1]
gi|300315450|gb|EFJ65234.1| alanine racemase protein [Escherichia coli MS 175-1]
gi|300413573|gb|EFJ96883.1| alanine racemase protein [Escherichia coli MS 115-1]
gi|300453490|gb|EFK17110.1| alanine racemase protein [Escherichia coli MS 116-1]
gi|301075929|gb|EFK90735.1| alanine racemase protein [Escherichia coli MS 146-1]
gi|315137957|dbj|BAJ45116.1| putative amino acid racemase [Escherichia coli DH1]
gi|315618999|gb|EFU99582.1| alanine racemase, N-terminal domain protein [Escherichia coli 3431]
gi|323939400|gb|EGB35611.1| alanine racemase domain-containing protein [Escherichia coli E482]
gi|331036374|gb|EGI08600.1| alanine racemase, N- domain protein [Escherichia coli H736]
Length = 387
Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 56/163 (34%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRIQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + V + L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFALKVLPEIVAEIQNLPGLHLAGLTHFPCLLWDEAVGKVLPTPNLHTLIQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIALEQLNAPSATSCTSLPLLAQYGVTHAEPGHALTGTIPA 265
>gi|168186352|ref|ZP_02620987.1| amino acid racemase [Clostridium botulinum C str. Eklund]
gi|169295637|gb|EDS77770.1| amino acid racemase [Clostridium botulinum C str. Eklund]
Length = 368
Score = 48.1 bits (114), Expect = 8e-04, Method: Composition-based stats.
Identities = 43/206 (20%), Positives = 77/206 (37%), Gaps = 34/206 (16%)
Query: 28 VSLVAVSKMV--DSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV----QLRFIGS 81
V ++ V+K+ + + + G + AE+++ K K ++ E + L IG
Sbjct: 29 VEVMGVNKVFNGSVETAKAIVDGGMNVVAESRIDNLK-KIQVVKCEKALLRSPALSEIG- 86
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI---M 138
++V D I S + LS E IKQ++ V + ++ G + GI
Sbjct: 87 -------DVVKYAD-ISLNSEIEIIKELSKEAIKQNKVHKVLLMIDFGDI--REGIWFEN 136
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF---YLLSEIAREC------KLTKL 189
+ ++ + + + + GL G P + E+ARE K L
Sbjct: 137 KEEIEEALSEIKLLPNIEIYGLGTNFNCYGTALPTIKNGKMFVELARELENKLNIKFKYL 196
Query: 190 SMGMTRDFELAIA----SGATSVRIG 211
S G + L G +RIG
Sbjct: 197 SGGNCTSYHLVDKGIFPEGINHLRIG 222
>gi|313677340|ref|YP_004055336.1| alanine racemase domain protein [Marivirga tractuosa DSM 4126]
gi|312944038|gb|ADR23228.1| alanine racemase domain protein [Marivirga tractuosa DSM 4126]
Length = 356
Score = 48.1 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 44/203 (21%), Positives = 87/203 (42%), Gaps = 24/203 (11%)
Query: 32 AVSKMV-DSKK-IRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSE 89
AV+K+ ++ ++ ++ G +++++ +K + + V+ +I + +
Sbjct: 31 AVTKLFCGNELYLKEVINLGFREIHDSRIKNL-QKVKEI--DPTVKTCYIKPPAKRSIPD 87
Query: 90 IVSLFDVIETVSREK-TASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
IV D+ +++ E T LLS E ++Q++ V I V TG + G+M + DF
Sbjct: 88 IVRYADM--SMNTEYYTLKLLSDEAVRQNKTHKVIIMVETG--DLREGVMGDHLIDFYAK 143
Query: 149 CRQKYQLNVEG----LMCIPPAMGNPKP-----HFYLLSEIARECKLTKLSMGMTRDFEL 199
+ + +EG L C+ M + + + E+ KL +S G + L
Sbjct: 144 VFELPNIQIEGIGTNLNCLHGVMPSQDKLIQLSLYKQIIELKFNRKLPLVSGGTSVTIPL 203
Query: 200 ----AIASGATSVRIGSGI-FGE 217
I +G RIG + FG
Sbjct: 204 IMNKQIPAGVNHFRIGETLYFGA 226
>gi|300021574|ref|YP_003754185.1| diaminopimelate decarboxylase [Hyphomicrobium denitrificans ATCC
51888]
gi|299523395|gb|ADJ21864.1| diaminopimelate decarboxylase [Hyphomicrobium denitrificans ATCC
51888]
Length = 423
Score = 48.1 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E LS + + I+VN TG K G+ ++
Sbjct: 124 VESEPELLALSEVATALGKTASIAIRVNPDVDAKTHAKISTGKAENKFGVPFEDARELYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGN---PKPHFYLLSEIAREC-----KLTKLSMG 192
L + G+ M I + + + F LL ++AR+ +L L +G
Sbjct: 184 RAATLPGLKISGIHMHIGSQITDLAPFRDAFALLHDLARDLIADGIRLEHLDIG 237
>gi|261345933|ref|ZP_05973577.1| alanine racemase [Providencia rustigianii DSM 4541]
gi|282566018|gb|EFB71553.1| alanine racemase [Providencia rustigianii DSM 4541]
Length = 407
Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 58/142 (40%), Gaps = 19/142 (13%)
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF--VIL 148
+ F+V E + + A L+ +KQ + +P+++ +N+ + ++G+ + L
Sbjct: 131 ATEFNVEELIGNLEMAQRLNAIAVKQGKIIPIHLALNSAG-MSRNGLEVGTSTGLQQAKL 189
Query: 149 CRQKYQLNVEGLMCIPPAMG--NPKPHFYLLSEIARE-CKLTKLSMGMTRDFELAIASG- 204
+ L + G+M P + + +++ +T L D L +A+
Sbjct: 190 ISELPNLKIVGIMSHYPEEDAAQIRKDLVKFKKQSQQVLDITGLKR---EDVTLHVANTY 246
Query: 205 AT---------SVRIGSGIFGE 217
AT VR+G +G+
Sbjct: 247 ATLTVPESWLDMVRVGGIFYGD 268
>gi|257460796|ref|ZP_05625897.1| GlnD family protein [Campylobacter gracilis RM3268]
gi|257442127|gb|EEV17269.1| GlnD family protein [Campylobacter gracilis RM3268]
Length = 368
Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 24/135 (17%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSG-IMPNQTKDFVILCRQKYQLNVEG 159
+ A L+ + V ++ G +SG + F+ + + G
Sbjct: 109 DSIEQAGLIERAFERSGTKACVLAEIEVG--ENRSGFVEKQDFAAFIKFIKGCKNIEFRG 166
Query: 160 LMC-------IPPAMGNPKPHFYL------LSEIARECKLT--KLSMG----MTRDFELA 200
+ + H ++IARE L +S+G + DFE
Sbjct: 167 VFSHDGHSYKAADKSECERIHLAAQRRTLEFADIARELALPARVVSIGSTPSLINDFE-- 224
Query: 201 IASGATSVRIGSGIF 215
I G T +R G+ IF
Sbjct: 225 ILKGITEIRPGTYIF 239
>gi|331664983|ref|ZP_08365884.1| alanine racemase, N- domain protein [Escherichia coli TA143]
gi|331057493|gb|EGI29479.1| alanine racemase, N- domain protein [Escherichia coli TA143]
Length = 387
Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 20/151 (13%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----IQKSGIMPNQTKD 144
+ DVI TV A +S +K R V ++V + + Q+SG + + +
Sbjct: 116 AVAQGTDVI-TVFTLDKAREVSAAAVKAGRVQSVLLKVYSDDDFLYPGQESGFVQHSLHE 174
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC--------KLTKL 189
V ++ L++ GL P + + P P+ + L + + +L
Sbjct: 175 VVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLAKSGIAIEQLNAP 234
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERPC 220
S L G T G + G P
Sbjct: 235 SATSCTSLPLLAEYGVTHAEPGHALTGTIPA 265
>gi|331674874|ref|ZP_08375631.1| alanine racemase, N- domain protein [Escherichia coli TA280]
gi|331067783|gb|EGI39181.1| alanine racemase, N- domain protein [Escherichia coli TA280]
Length = 387
Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 20/151 (13%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----IQKSGIMPNQTKD 144
+ DVI TV A +S +K R V ++V + + Q+SG + + +
Sbjct: 116 AVAQGTDVI-TVFTLDKAREVSAAAVKAGRVQSVLLKVYSDDDFLYPGQESGFVQHSLHE 174
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC--------KLTKL 189
V ++ L++ GL P + + P P+ + L + + +L
Sbjct: 175 VVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLAKSGIAIEQLNAP 234
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERPC 220
S L G T G + G P
Sbjct: 235 SATSCTSLPLLAEYGVTHAEPGHALTGTIPA 265
>gi|295111090|emb|CBL27840.1| Predicted amino acid racemase [Synergistetes bacterium SGP1]
Length = 371
Score = 48.1 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 40/192 (20%), Positives = 67/192 (34%), Gaps = 33/192 (17%)
Query: 41 KIRVALSCGQVIFA----ENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV 96
+ G FA EN E K+W R +++ I ++ ++V L DV
Sbjct: 44 MVDALADAGIRNFADARLENI--EVLKRWA--RSAMLLRVPMI-----SEADDVVCLCDV 94
Query: 97 IETVSREKTA-SLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL 155
+++ E LS + R V + V G + G +P V +
Sbjct: 95 --SLNSELAVIEALSDAALTLGRTHEVILMVELG--DLREGALPEDVMPMVEQILTMRGV 150
Query: 156 NVEGL----MCIPPAMGNPKPHFYLLSEIARECK------LTKLSMGMTRDFELA----I 201
+ GL C + P L+++A+E + +S G + L I
Sbjct: 151 KLAGLGVNFNCYGGVIPTPAKL-KELADLAKEAQNRCGYEFEYVSGGNSGSLPLVFDDRI 209
Query: 202 ASGATSVRIGSG 213
SG +RIG
Sbjct: 210 PSGINHLRIGEA 221
>gi|262381465|ref|ZP_06074603.1| D-threonine aldolase [Bacteroides sp. 2_1_33B]
gi|262296642|gb|EEY84572.1| D-threonine aldolase [Bacteroides sp. 2_1_33B]
Length = 367
Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 36/185 (19%)
Query: 6 KLQVFKQKIENSAILAKRPKDSV-SLVAVSKM-VDSKKIRVALSCGQVIFAENKLQEAKK 63
L + +I + LAKR L K ++ R+ L G F
Sbjct: 17 ALAFYPDRISGNIELAKRIIGDTNRLRPHVKTNKAAEVSRMLLDAGIRKF---------- 66
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKV--------SEIVSLFDVIET---------VSREKTA 106
K + + +G + + V +I L D+I+ V + + A
Sbjct: 67 KCATIAEAE-----MLGHINAPDVLLAYQPVGPKISRLLDLIKAYPATHYSCLVDQAENA 121
Query: 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA 166
+S + L V+I +N G ++G++P + + V L + GL
Sbjct: 122 RAISALCEAGNITLDVFIDLNVGM--NRTGVLPERAEALVDAILPLKSLQIIGLHGYDGH 179
Query: 167 MGNPK 171
+ + +
Sbjct: 180 IHDAE 184
>gi|301309990|ref|ZP_07215929.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Bacteroides
sp. 20_3]
gi|300831564|gb|EFK62195.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Bacteroides
sp. 20_3]
Length = 367
Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 33/185 (17%), Positives = 63/185 (34%), Gaps = 36/185 (19%)
Query: 6 KLQVFKQKIENSAILAKRPKDSV-SLVAVSKM-VDSKKIRVALSCGQVIFAENKLQEAKK 63
L + +I + LAKR L K ++ R+ L G F
Sbjct: 17 ALAFYPDRISGNIELAKRIIGDTNRLRPHVKTNKAAEVSRMLLDAGIRKF---------- 66
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKV--------SEIVSLFDVIET---------VSREKTA 106
K + + +G + + V +I L D+I+ V + + A
Sbjct: 67 KCATIAEAE-----MLGHINAPDVLLAYQPVGPKISRLLDLIKAYPATHYSCLVDQAENA 121
Query: 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA 166
+S + L V+I +N G ++G++P + + V L + GL
Sbjct: 122 RAISALCEAGNITLDVFIDLNVGM--NRTGVLPERAEALVDAILPLKSLQIIGLHGYDGH 179
Query: 167 MGNPK 171
+ + +
Sbjct: 180 IHDAE 184
>gi|148379935|ref|YP_001254476.1| alanine racemase [Clostridium botulinum A str. ATCC 3502]
gi|153933254|ref|YP_001384234.1| alanine racemase domain-containing protein [Clostridium botulinum A
str. ATCC 19397]
gi|153937081|ref|YP_001387774.1| alanine racemase domain-containing protein [Clostridium botulinum A
str. Hall]
gi|148289419|emb|CAL83515.1| putative alanine racemase [Clostridium botulinum A str. ATCC 3502]
gi|152929298|gb|ABS34798.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
A str. ATCC 19397]
gi|152932995|gb|ABS38494.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
A str. Hall]
Length = 355
Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 43/228 (18%), Positives = 87/228 (38%), Gaps = 28/228 (12%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKK--IRVALSCGQVIFAENKLQEAKK 63
L+ I+ L + V V+K S+K + + G A+ +++
Sbjct: 11 NLKNIAHNIKQLIDLCNIK--EIKPVIVTKSFCSEKSVVETIIKEGIKTIADARMKNLM- 67
Query: 64 KWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
K L+ ++ +++ ++VS+++ D I S + LS E K ++ +
Sbjct: 68 KIQDLKCEKLLLRIPM-----KSEVSKVIEYSD-ISLNSELEIIKELSKEARKVNKIHKI 121
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-------IPPAMGNPKPHFY 175
+ V+ G + G++P V + L GL + P N
Sbjct: 122 ILMVDLG--DLREGVLPKDALSTVKEIIKLPNLKFIGLGTNLTCYGGVIPDENNLGKLLE 179
Query: 176 LLSEIARECKLT--KLSMGMTRDFEL----AIASGATSVRIG-SGIFG 216
+ ++I +E K+ +S G + + +I G +RIG + I G
Sbjct: 180 IKNQIEKELKIKVSIVSGGNSSSLHMIVNDSIPKGINQLRIGEAAILG 227
>gi|312142736|ref|YP_003994182.1| alanine racemase [Halanaerobium sp. 'sapolanicus']
gi|311903387|gb|ADQ13828.1| alanine racemase [Halanaerobium sp. 'sapolanicus']
Length = 377
Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 20/140 (14%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY 153
+D+I T+S+ KTA L+ + +++ N + + G+ + + +
Sbjct: 103 YDLIPTISKFKTAERLNNLCAGYNLKKKIHL--NIDTGMNRVGVNYKKALPLLKKITELP 160
Query: 154 QLNVEGLMC-IPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT------ 206
L +EG+M A K + + E + + KL + E+ I A
Sbjct: 161 NLEIEGIMTHFARADELEKEYTLIQWERFNQL-IEKLE---AENIEIPIKHCANSAAVID 216
Query: 207 -------SVRIGSGIFGERP 219
VR G I+G +P
Sbjct: 217 FPEFALDMVRAGIMIYGLKP 236
>gi|86750314|ref|YP_486810.1| alanine racemase-like [Rhodopseudomonas palustris HaA2]
gi|86573342|gb|ABD07899.1| Alanine racemase-like [Rhodopseudomonas palustris HaA2]
Length = 360
Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 62/165 (37%), Gaps = 8/165 (4%)
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
EA+ + + IG + ++ + +I E + L + R
Sbjct: 74 EAEVMAEAGIDDILISYNLIGEEKMARLGALHERAQMIVAADNEVVIAGLPAAAARAGRP 133
Query: 120 LPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS 178
L V ++ +TG Q++G+ P + L +GLM P G P+ +
Sbjct: 134 LGVVVECDTGR--QRAGVETPAEAIALARTIAASDGLVFKGLMLYPTEDGWPQAQRFFDE 191
Query: 179 EI----ARECKLTKLSMGMTRDFE-LAIASGATSVRIGSGIFGER 218
+ A +S G + + + L +GAT R G+ I+ +R
Sbjct: 192 ALAGIRAHGLDAEIVSTGGSPNLKNLGQLAGATEHRPGTYIYNDR 236
>gi|332085526|gb|EGI90692.1| alanine racemase, N-terminal domain protein [Shigella boydii
5216-82]
Length = 387
Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRIQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIAIEQLNAPSATSCTSLPLLAEYGVTHAEPGHALTGTIPA 265
>gi|258545059|ref|ZP_05705293.1| pyridoxal kinase [Cardiobacterium hominis ATCC 15826]
gi|258519679|gb|EEV88538.1| pyridoxal kinase [Cardiobacterium hominis ATCC 15826]
Length = 142
Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 109 LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD------FVILCRQKYQLNVEGL 160
L + ++ R L V+IQ+NT E QK G+ P+ + +K + GL
Sbjct: 79 LDRRLQQEGRSLDVFIQINTSDEPQKYGMTPDAAAPCRSGANILYGNPRKPHRALRGL 136
>gi|78224104|ref|YP_385851.1| alanine racemase [Geobacter metallireducens GS-15]
gi|123571083|sp|Q39RJ8|ALR_GEOMG RecName: Full=Alanine racemase
gi|78195359|gb|ABB33126.1| alanine racemase [Geobacter metallireducens GS-15]
Length = 379
Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 34/236 (14%), Positives = 79/236 (33%), Gaps = 34/236 (14%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKI-RVALSCGQVIFAEN 56
+L + + ++ + ++A+ K I R S G F
Sbjct: 14 ALRHNFEQVQRAVPAGCG----------ILAIVKADAYGHGFMDISRELESLGVTAFG-- 61
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ + + D + +G + + + V F++ V + A +L+ +
Sbjct: 62 -VAFLAEGIQLRKSGIDRPVLILGGVYPGQERKCVG-FNLSTAVFSLEQARVLNDTAARL 119
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL----MCIPPAMGNPKP 172
R ++++++TG + G+ + F R+ L +EG+ + +
Sbjct: 120 YRKAKIHVKIDTGM--GRLGVAAAEAPAFFRELREMKSLELEGIISHFASADELDDDGRR 177
Query: 173 HFYLLSEIARECKLTKLSMGMTRDFEL----AIASG-----ATSVRIGSGIFGERP 219
+ + + S+G+ + A A G VR G ++G P
Sbjct: 178 FSDRQAAVFAQSVAEARSLGLDPRYVHIANSAAAFGMDLPFCNLVRPGIVLYGALP 233
>gi|27379075|ref|NP_770604.1| hypothetical protein bll3964 [Bradyrhizobium japonicum USDA 110]
gi|27352225|dbj|BAC49229.1| bll3964 [Bradyrhizobium japonicum USDA 110]
Length = 359
Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 34/222 (15%), Positives = 68/222 (30%), Gaps = 30/222 (13%)
Query: 12 QKIENSAILAK---RPKDSVSLVAVSKMV---DSKKIRVALSC-GQVI--FAENKLQEAK 62
+I+ + A RP K K+++A G E A+
Sbjct: 30 ARIQKACDEAGVANRPHI--------KTHKNPTIAKMQIAAGAKGITCQKLGE-----AE 76
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ + +G + ++ + + ++ + L R L V
Sbjct: 77 IMANAGIDDILISYNLLGEEKMARLGALQAKANMTVAADNSTVVAGLPKAAAASGRPLSV 136
Query: 123 YIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI- 180
++ +TG +++G+ P + L G M P G + +
Sbjct: 137 VVECDTGR--KRAGVETPAEAIALAREIAGSKGLEFAGFMLYPTETGWADAQKFYDEALA 194
Query: 181 ---ARECKLTKLSMGMTRDF-ELAIASGATSVRIGSGIFGER 218
A +S G T + + G T R G+ I+ +R
Sbjct: 195 GVRAHGLDAKIVSTGGTPNLVNIGKLKGGTEHRFGTYIYNDR 236
>gi|331649177|ref|ZP_08350263.1| alanine racemase, N- domain protein [Escherichia coli M605]
gi|330909414|gb|EGH37928.1| protein containing an Alanine Racemase Domain [Escherichia coli
AA86]
gi|331041675|gb|EGI13819.1| alanine racemase, N- domain protein [Escherichia coli M605]
Length = 387
Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++VS+ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVSDAVEQGTDVITVFTLDKAREISAAAVKAGRVQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V + L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIQNLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIAIEQLNAPSATSCTSLPLLAEYGVTHTEPGHALTGTIPA 265
>gi|150007967|ref|YP_001302710.1| D-threonine aldolase [Parabacteroides distasonis ATCC 8503]
gi|256840860|ref|ZP_05546368.1| D-threonine aldolase [Parabacteroides sp. D13]
gi|298376682|ref|ZP_06986637.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Bacteroides
sp. 3_1_19]
gi|149936391|gb|ABR43088.1| D-threonine aldolase, metal-activated pyridoxal enzyme
[Parabacteroides distasonis ATCC 8503]
gi|256738132|gb|EEU51458.1| D-threonine aldolase [Parabacteroides sp. D13]
gi|298266560|gb|EFI08218.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Bacteroides
sp. 3_1_19]
Length = 367
Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 32/178 (17%), Positives = 66/178 (37%), Gaps = 22/178 (12%)
Query: 6 KLQVFKQKIENSAILAKRPKDSV-SLVAVSKM-VDSKKIRVALSCGQVIF-----AENKL 58
L + +I + LAKR L K ++ R+ L G F AE
Sbjct: 17 ALAFYPDRISGNIELAKRIIGDTNRLRPHVKTNKAAEVSRMLLDAGIRKFKCATIAE--- 73
Query: 59 QEAKKKWIPLRKEWDVQLRF--IGSLQSNKVSEIVSLFDVIE---TVSREKTASLLSLEM 113
+ + DV L + +G + +++ +++ + V + + A +S
Sbjct: 74 ----AEMLGHMNAPDVLLAYQPVGP-KISRLLDLIKAYPATHYSCLVDQAENARAISALC 128
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171
+ L V+I +N G ++G++P + + V L + GL + + +
Sbjct: 129 EAGNITLDVFIDLNVGM--NRTGVLPERAEALVDAILPLKSLQIIGLHGYDGHIHDAE 184
>gi|260436550|ref|ZP_05790520.1| alanine racemase [Synechococcus sp. WH 8109]
gi|260414424|gb|EEX07720.1| alanine racemase [Synechococcus sp. WH 8109]
Length = 376
Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 41/211 (19%), Positives = 74/211 (35%), Gaps = 27/211 (12%)
Query: 29 SLVAVSK----MVDSKKI-RVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
L+AV K ++ + R AL G LQE + R + + + +L
Sbjct: 36 QLMAVVKADGYGHGAETVARAALQGGATSLGVATLQEGLE---LRRAGLEAPVLLLSNL- 91
Query: 84 SNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
NK ++ + + T+S + A L + R V Q+ + + G ++
Sbjct: 92 -NKPDDLRTCLHWGLMPTLSSLREAQLCNALAADSGRCFDV--QLKIDTGMARLGCSLSE 148
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE---IARECKLTKLSMGMTRDFE 198
LN+EG+ P L + ++ L + G+TR
Sbjct: 149 GHQTAAELESLEHLNLEGIYSHLACADEPNDALTSLQQERFVSMLAALPQAGAGITR--H 206
Query: 199 LAIASGA--------TSVRIGSGIFGERPCQ 221
LA ++G VR+G ++G P
Sbjct: 207 LANSAGTLLNRELHHDLVRVGLALYGHAPAS 237
>gi|332085611|gb|EGI90775.1| alanine racemase, N-terminal domain protein [Shigella dysenteriae
155-74]
Length = 352
Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRIQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIAIEQLNAPSATSCTSLPLLAEYGVTHAEPGHALTGTIPA 265
>gi|52426139|ref|YP_089276.1| LysA protein [Mannheimia succiniciproducens MBEL55E]
gi|52308191|gb|AAU38691.1| LysA protein [Mannheimia succiniciproducens MBEL55E]
Length = 416
Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V ++ K + P+ ++VN + K G+ ++ ++
Sbjct: 124 VESLAELQRINEVAGKSGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVDEAREVYR 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + V G+ C I P + LL ++ + +L L +G
Sbjct: 184 LASRLPNIKVTGMDCHIGSQLTEIQPFLDATDRLILLLEQLREDGIELEHLDLG 237
>gi|254038544|ref|ZP_04872600.1| alanine racemase family [Escherichia sp. 1_1_43]
gi|226839050|gb|EEH71073.1| alanine racemase family [Escherichia sp. 1_1_43]
Length = 387
Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 14/119 (11%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRIQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC 184
Q+SG + V + L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFALKVLPEIVAEIQNLPGLHLAGLTHFPCLLWDEAVGKVLPTPNLHTLIQARDQL 221
>gi|332798388|ref|YP_004459887.1| alanine racemase [Tepidanaerobacter sp. Re1]
gi|332696123|gb|AEE90580.1| Alanine racemase [Tepidanaerobacter sp. Re1]
Length = 380
Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 46/239 (19%), Positives = 82/239 (34%), Gaps = 50/239 (20%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVD-SKKIRVALSCGQVIFAEN 56
++ + K+ I N L+AV K D + + L G
Sbjct: 16 TIASNTNNIKRLIGNKE-----------LMAVVKGNAYTHDMIEVSKTVLKNGASRLGVG 64
Query: 57 KLQEA--KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
+L+E +K ++ L G EIV D+ +TV T LS E
Sbjct: 65 RLEEGIYLRKAGITAPILNMCLNMEGQ-----EREIVKY-DIAQTVCDLDTVHRLSCEAA 118
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
K ++ ++++++TG + GI P +F+ + +EG+ F
Sbjct: 119 KMNKSAKIHVKIDTGM--GRIGIFPEDALNFISEVSAMQNIEIEGVYT--HFATPHDKEF 174
Query: 175 ---------YLLSEIARE--------CKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+L + +E C ++ + M +E VRIG I+G
Sbjct: 175 MSYQLKLFSSVLKRLNQEGYSIPLKHCASSEAFVAMPDTWEKF-----DMVRIGDLIYG 228
>gi|317127511|ref|YP_004093793.1| alanine racemase domain protein [Bacillus cellulosilyticus DSM
2522]
gi|315472459|gb|ADU29062.1| alanine racemase domain protein [Bacillus cellulosilyticus DSM
2522]
Length = 367
Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 29/150 (19%), Positives = 57/150 (38%), Gaps = 22/150 (14%)
Query: 86 KVSEIVSL---FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-Q 141
++ +++ +I TV E+ ++ + V+I+VN+G + + G+ P +
Sbjct: 90 RLKKLLKWSKRARLILTVDSEEQVKIIEAIAKELIVTPEVWIKVNSG--LNRCGVEPGVE 147
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPA------MGNPKPHFYLLSE-IARECKLTK------ 188
+ L++ G+ +E I R +L +
Sbjct: 148 AFNLAECINNTETLDLTGMYTHAGHSYAAKCEEEVNRIAKQEAESILRSVELCEKNGIII 207
Query: 189 --LSMGMTRDFEL-AIASGATSVRIGSGIF 215
S+G T FE A +G T VR G+ +F
Sbjct: 208 PNRSIGSTPTFERGAKYAGITEVRPGNAVF 237
>gi|223938778|ref|ZP_03630666.1| alanine racemase [bacterium Ellin514]
gi|223892476|gb|EEF58949.1| alanine racemase [bacterium Ellin514]
Length = 392
Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 12/132 (9%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
V ++ L K R +PV++++NTG + + G+ + V L EG
Sbjct: 124 VDSQEVVLKLGKLAEKVGRPVPVHLKINTG--MNRYGVRWTEALALVEFILSTKSLQFEG 181
Query: 160 LMCIPPAMGNPKPHFY---------LLSEIARE-CKLTKLSMGMTRDFELAIASGATSVR 209
++ F +L+E+A + + + + F + VR
Sbjct: 182 VLSHFAMSDELDKTFANLQLERFKMVLAELADKSIHVKYRHICNSGGFLDLPQAHFDMVR 241
Query: 210 IGSGIFGERPCQ 221
IG +G P Q
Sbjct: 242 IGLLQYGVYPSQ 253
>gi|293412797|ref|ZP_06655465.1| conserved hypothetical protein [Escherichia coli B354]
gi|291468444|gb|EFF10937.1| conserved hypothetical protein [Escherichia coli B354]
Length = 387
Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 20/151 (13%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----IQKSGIMPNQTKD 144
+ DVI TV A +S +K R V ++V + + Q+SG + + +
Sbjct: 116 AVAQGTDVI-TVFTLDKAREVSAAAVKAGRVQSVLLKVYSDDDFLYPGQESGFVQHSLHE 174
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC--------KLTKL 189
V ++ L++ GL P + + P P+ + L + + +L
Sbjct: 175 VVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLIQARDQLAKSGIAIEQLNAP 234
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERPC 220
S L G T G + G P
Sbjct: 235 SATSCTSLPLLAEYGVTHAEPGHALTGTIPA 265
>gi|307311957|ref|ZP_07591595.1| alanine racemase domain protein [Escherichia coli W]
gi|306908101|gb|EFN38601.1| alanine racemase domain protein [Escherichia coli W]
gi|315062658|gb|ADT76985.1| predicted amino acid racemase [Escherichia coli W]
gi|323376754|gb|ADX49022.1| alanine racemase domain protein [Escherichia coli KO11]
Length = 387
Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTEVITVFTLDKAREVSAAAVKAGRVQFVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLIQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIALEQLNAPSATSCTSLPLLAEYGVTHAEPGHALTGTIPA 265
>gi|311740005|ref|ZP_07713839.1| alanine racemase [Corynebacterium pseudogenitalium ATCC 33035]
gi|311305078|gb|EFQ81147.1| alanine racemase [Corynebacterium pseudogenitalium ATCC 33035]
Length = 368
Score = 47.3 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 37/201 (18%), Positives = 72/201 (35%), Gaps = 37/201 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVALS-CGQVIFAEN 56
++ + +++ K+K+ V L+ V K + K+ ++ G F
Sbjct: 13 AIAHNVRLIKEKV----------GPEVKLMCVVKADAYGHGAAKVVPVMARAGADCFGVA 62
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV--SEIVSLFDVIETVSREKTASLLSLEMI 114
L+EA V + Q++++ + + +V V+ + A L +
Sbjct: 63 TLREAVDLRRAGVDAPIVAWIW----QTDEILEEALANGIEV--AVNSLEQAHKL----V 112
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI--------PPA 166
K VY++V TG +SG+ + + R + V GLM P
Sbjct: 113 KADFPAEVYVKVETGM--HRSGVDEEDWAETFKVLRDAPHIKVLGLMSHFACADEPDNPH 170
Query: 167 MGNPKPHFYLLSEIARECKLT 187
+ F ++ARE L
Sbjct: 171 NDAQEEAFRTALQLAREIGLE 191
>gi|298244439|ref|ZP_06968245.1| alanine racemase domain protein [Ktedonobacter racemifer DSM 44963]
gi|297551920|gb|EFH85785.1| alanine racemase domain protein [Ktedonobacter racemifer DSM 44963]
Length = 370
Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 40/202 (19%), Positives = 74/202 (36%), Gaps = 25/202 (12%)
Query: 35 KM-VDSKKIRVALSCGQV--IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV 91
K + R L+ G V A K+ EA+ + + +G + +++ ++
Sbjct: 48 KTVKSPELARRLLAAGAVGGCVA--KVSEAEVMAQEGIDDLLITTEIVGKPKLSRLVTLI 105
Query: 92 SLFDVIETV-SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILC 149
I+ V A L+ + + + V I +N G + G++P + C
Sbjct: 106 QHHPRIKVVIDSFIGAQELNTALHEAQLEIDVLIDLNVGQ--NRCGVLPGKEALTLAHYC 163
Query: 150 RQKYQLNVEG-------LMCIPPAMGNPKPH---FYLLSEIARECKL-----TKLSMGMT 194
+ L++ G L I + LL+E A + + ++ G T
Sbjct: 164 SKLPHLHLVGVQGYEGHLQHIHSPEERTQRCHQAMRLLTETAAQLRFEGFPIEVVTTGGT 223
Query: 195 RDFEL-AIASGATSVRIGSGIF 215
E+ A G T V+ GS IF
Sbjct: 224 GTAEICADYGGITEVQPGSFIF 245
>gi|194014407|ref|ZP_03053024.1| putative alanine racemase [Bacillus pumilus ATCC 7061]
gi|194013433|gb|EDW22998.1| putative alanine racemase [Bacillus pumilus ATCC 7061]
Length = 369
Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 33/214 (15%), Positives = 77/214 (35%), Gaps = 27/214 (12%)
Query: 24 PKDSVSLVAVSKMV---DSKKIRVALSC-GQVIFAENKLQEAKKKWIPLRKEWDVQLRFI 79
+ V L +K K++ + G + K+ EA+ + + + +
Sbjct: 31 DRQQVKLRPHTKTHKTPSLAKVQEEMGASGLTVA---KVGEAEVMAAHGLTDIFIANQIV 87
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
G + ++ ++ + + + + + V I++ G E +SG++
Sbjct: 88 GETKLKRIRKLAESIHISFGIDCVEHVHQIEDVFRGAEKKAEVLIEIEVGEE--RSGVIE 145
Query: 140 N-QTKDFVILCRQKYQLNVEGLMCIPPAM--GNPKPHFYLL-----------SEIARECK 185
+ + + ++++G+ K H L ++IA+E
Sbjct: 146 ESDFRQILQAIKTCEFVHLKGIFSHDGHTYKAESKAHCQTLYEDAVNRTLRFAQIAKESG 205
Query: 186 L--TKLSMGMTRDF--ELAIASGATSVRIGSGIF 215
+ +S+G T F + I G T +R G+ IF
Sbjct: 206 MLLEVVSIGSTPPFLFQFDIPKGVTEIRPGTYIF 239
>gi|310815524|ref|YP_003963488.1| alanine racemase domain-containing protein [Ketogulonicigenium
vulgare Y25]
gi|308754259|gb|ADO42188.1| alanine racemase domain-containing protein [Ketogulonicigenium
vulgare Y25]
Length = 265
Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 7/106 (6%)
Query: 117 SRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ + ++ ++G ++G+ P + L + GLM PA
Sbjct: 20 GAEIGILVEFDSGM--GRTGVVAPEAALALMQQVLATPGLRLAGLMTY-PASAQTVTFMA 76
Query: 176 LLSEIARECKLTK--LSMGMTRD-FELAIASGATSVRIGSGIFGER 218
L + R L LS+G + ++ G +R+G+ I+ +R
Sbjct: 77 ALKPLLRAQGLDVPPLSVGGSPKAYQTHSLGGVDELRVGTYIYNDR 122
>gi|157691761|ref|YP_001486223.1| alanine racemase [Bacillus pumilus SAFR-032]
gi|157680519|gb|ABV61663.1| possible alanine racemase [Bacillus pumilus SAFR-032]
Length = 368
Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 57/155 (36%), Gaps = 20/155 (12%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
+G + ++ ++ + + + + + V I++ G E +SG++
Sbjct: 86 VGETKLKRIRKLAESIHISFGIDCVEHVHQIEDVFRGAEKKAEVLIEIEVGEE--RSGVI 143
Query: 139 PN-QTKDFVILCRQKYQLNVEGLMCIPPAM--GNPKPHFYLL-----------SEIAREC 184
+ + + ++++G+ K H L ++IA E
Sbjct: 144 EESDFRQILQAIKTCDFVHLKGIFSHDGHTYKAESKAHCQTLYEDAVNRTLQFAQIATEA 203
Query: 185 KL--TKLSMGMTRDF--ELAIASGATSVRIGSGIF 215
+ +S+G T F + I G T +R G+ IF
Sbjct: 204 GMMLDVVSIGSTPPFLFQFDIPKGVTEIRPGTYIF 238
>gi|294491453|gb|ADE90209.1| alanine racemase family [Escherichia coli IHE3034]
Length = 387
Score = 47.3 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++VS+ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVSDAVEQGTDVITVFTLDKAREISAAAVKTGRVQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V + L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIQNLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIAIEQLNAPSATSCTSLPLLAEYGVTHTEPGHALTGTIPA 265
>gi|26249975|ref|NP_756015.1| hypothetical protein c4151 [Escherichia coli CFT073]
gi|215488662|ref|YP_002331093.1| predicted amino acid racemase [Escherichia coli O127:H6 str.
E2348/69]
gi|227883511|ref|ZP_04001316.1| alanine racemase domain protein [Escherichia coli 83972]
gi|300974837|ref|ZP_07172745.1| alanine racemase protein [Escherichia coli MS 45-1]
gi|301050417|ref|ZP_07197303.1| alanine racemase protein [Escherichia coli MS 185-1]
gi|312968313|ref|ZP_07782523.1| alanine racemase domain protein [Escherichia coli 2362-75]
gi|26110404|gb|AAN82589.1|AE016768_7 Hypothetical protein yhfX [Escherichia coli CFT073]
gi|215266734|emb|CAS11173.1| predicted amino acid racemase [Escherichia coli O127:H6 str.
E2348/69]
gi|227839390|gb|EEJ49856.1| alanine racemase domain protein [Escherichia coli 83972]
gi|300297885|gb|EFJ54270.1| alanine racemase protein [Escherichia coli MS 185-1]
gi|300410469|gb|EFJ94007.1| alanine racemase protein [Escherichia coli MS 45-1]
gi|307555464|gb|ADN48239.1| alanine racemase family [Escherichia coli ABU 83972]
gi|312287138|gb|EFR15048.1| alanine racemase domain protein [Escherichia coli 2362-75]
gi|315291639|gb|EFU50995.1| alanine racemase protein [Escherichia coli MS 153-1]
gi|323189034|gb|EFZ74318.1| alanine racemase, N-terminal domain protein [Escherichia coli
RN587/1]
Length = 387
Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++VS+ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVSDAVEQGTDVITVFTLDKAREISAAAVKTGRVQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V + L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIQNLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIAIEQLNAPSATSCTSLPLLAEYGVTHTEPGHALTGTIPA 265
>gi|91212853|ref|YP_542839.1| hypothetical protein UTI89_C3879 [Escherichia coli UTI89]
gi|110643615|ref|YP_671345.1| hypothetical protein ECP_3466 [Escherichia coli 536]
gi|117625649|ref|YP_858972.1| putative amino acid racemase [Escherichia coli APEC O1]
gi|191171491|ref|ZP_03033039.1| alanine racemase family [Escherichia coli F11]
gi|218560438|ref|YP_002393351.1| amino acid racemase [Escherichia coli S88]
gi|218691657|ref|YP_002399869.1| putative amino acid racemase [Escherichia coli ED1a]
gi|237703108|ref|ZP_04533589.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|300987071|ref|ZP_07177980.1| alanine racemase protein [Escherichia coli MS 200-1]
gi|91074427|gb|ABE09308.1| hypothetical protein YhfX [Escherichia coli UTI89]
gi|110345207|gb|ABG71444.1| hypothetical protein YhfX [Escherichia coli 536]
gi|115514773|gb|ABJ02848.1| putative amino acid racemase [Escherichia coli APEC O1]
gi|190908118|gb|EDV67709.1| alanine racemase family [Escherichia coli F11]
gi|218367207|emb|CAR04981.1| putative amino acid racemase [Escherichia coli S88]
gi|218429221|emb|CAR10031.1| putative amino acid racemase [Escherichia coli ED1a]
gi|226902372|gb|EEH88631.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|300306286|gb|EFJ60806.1| alanine racemase protein [Escherichia coli MS 200-1]
gi|307628442|gb|ADN72746.1| putative amino acid racemase [Escherichia coli UM146]
gi|315286008|gb|EFU45446.1| alanine racemase protein [Escherichia coli MS 110-3]
gi|323950038|gb|EGB45921.1| alanine racemase domain-containing protein [Escherichia coli H252]
gi|323954682|gb|EGB50464.1| alanine racemase domain-containing protein [Escherichia coli H263]
gi|324009434|gb|EGB78653.1| alanine racemase protein [Escherichia coli MS 57-2]
gi|324014632|gb|EGB83851.1| alanine racemase protein [Escherichia coli MS 60-1]
Length = 387
Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++VS+ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVSDAVEQGTDVITVFTLDKAREISAAAVKTGRVQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V + L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIQNLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIAIEQLNAPSATSCTSLPLLAEYGVTHTEPGHALTGTIPA 265
>gi|270159139|ref|ZP_06187795.1| putative metal-activated pyridoxal enzyme [Legionella longbeachae
D-4968]
gi|289166027|ref|YP_003456165.1| alanine racemase [Legionella longbeachae NSW150]
gi|269987478|gb|EEZ93733.1| putative metal-activated pyridoxal enzyme [Legionella longbeachae
D-4968]
gi|288859200|emb|CBJ13132.1| putative alanine racemase [Legionella longbeachae NSW150]
Length = 374
Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
V ++ L+ + ++ + V + ++ G I ++GI P +F ++ L++ G
Sbjct: 115 VDSKENILALNEAGARHNKRIHVLLDIDPG--IGRTGIKPEHALNFARELQRLPWLHLMG 172
Query: 160 LMCIPPAMGNPKPHFYLLSE 179
+ C + + P F E
Sbjct: 173 VQCYAGNLQHI-PSFNERRE 191
>gi|299139893|ref|ZP_07033065.1| alanine racemase [Acidobacterium sp. MP5ACTX8]
gi|298598247|gb|EFI54413.1| alanine racemase [Acidobacterium sp. MP5ACTX8]
Length = 385
Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 45/146 (30%), Gaps = 38/146 (26%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKYQLNVE 158
V + + L + V+++V+TG + G P + ++ E
Sbjct: 102 VWTPEHIAALERAARSAGHRIQVHLEVDTGM--GRQGAAPGEDLARTLEALADSRWVSCE 159
Query: 159 GLMCI--------PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFEL-----AIASGA 205
G+M + F + A L+ GM +F A+ G+
Sbjct: 160 GIMTHLCCSESAEAKITEEQRERFASALDQA-------LAAGMRPEFVHLANTSAVDEGS 212
Query: 206 TS---------------VRIGSGIFG 216
T VRIG I+G
Sbjct: 213 TMQWIRDTAKSLGARAMVRIGFAIYG 238
>gi|300822828|ref|ZP_07102964.1| alanine racemase protein [Escherichia coli MS 119-7]
gi|331670199|ref|ZP_08371038.1| alanine racemase, N- domain protein [Escherichia coli TA271]
gi|331679441|ref|ZP_08380111.1| alanine racemase, N- domain protein [Escherichia coli H591]
gi|300524594|gb|EFK45663.1| alanine racemase protein [Escherichia coli MS 119-7]
gi|324116427|gb|EGC10346.1| alanine racemase domain-containing protein [Escherichia coli E1167]
gi|331062261|gb|EGI34181.1| alanine racemase, N- domain protein [Escherichia coli TA271]
gi|331072613|gb|EGI43938.1| alanine racemase, N- domain protein [Escherichia coli H591]
Length = 387
Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRIQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIAIEQLNAPSATSCTSLPLLAQYGVTHAEPGHALTGTIPA 265
>gi|260846165|ref|YP_003223943.1| putative amino acid racemase [Escherichia coli O103:H2 str. 12009]
gi|257761312|dbj|BAI32809.1| predicted amino acid racemase [Escherichia coli O103:H2 str. 12009]
Length = 387
Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRIQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIVIEQLNAPSATSCTSLPLLAQYGVTHAEPGHALTGTIPA 265
>gi|193061809|ref|ZP_03042906.1| alanine racemase family [Escherichia coli E22]
gi|194426915|ref|ZP_03059467.1| alanine racemase domain protein [Escherichia coli B171]
gi|192932599|gb|EDV85196.1| alanine racemase family [Escherichia coli E22]
gi|194414876|gb|EDX31146.1| alanine racemase domain protein [Escherichia coli B171]
gi|323162764|gb|EFZ48601.1| alanine racemase, N-terminal domain protein [Escherichia coli
E128010]
Length = 387
Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRIQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIAIEQLNAPSATSCTSLPLLAQYGVTHAEPGHALTGTIPA 265
>gi|209920833|ref|YP_002294917.1| hypothetical protein ECSE_3642 [Escherichia coli SE11]
gi|218555926|ref|YP_002388839.1| putative amino acid racemase [Escherichia coli IAI1]
gi|218697061|ref|YP_002404728.1| putative amino acid racemase [Escherichia coli 55989]
gi|293453688|ref|ZP_06664107.1| yhfX protein [Escherichia coli B088]
gi|209914092|dbj|BAG79166.1| conserved hypothetical protein [Escherichia coli SE11]
gi|218353793|emb|CAV00125.1| putative amino acid racemase [Escherichia coli 55989]
gi|218362694|emb|CAR00320.1| putative amino acid racemase [Escherichia coli IAI1]
gi|291321814|gb|EFE61245.1| yhfX protein [Escherichia coli B088]
gi|323944397|gb|EGB40472.1| alanine racemase domain-containing protein [Escherichia coli H120]
gi|324018729|gb|EGB87948.1| alanine racemase protein [Escherichia coli MS 117-3]
Length = 387
Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRIQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIAIEQLNAPSATSCTSLPLLAQYGVTHAEPGHALTGTIPA 265
>gi|326204287|ref|ZP_08194146.1| alanine racemase [Clostridium papyrosolvens DSM 2782]
gi|325985562|gb|EGD46399.1| alanine racemase [Clostridium papyrosolvens DSM 2782]
Length = 389
Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/240 (16%), Positives = 86/240 (35%), Gaps = 44/240 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFA----EN- 56
++ + ++ + +I + + ++ V K A G + A EN
Sbjct: 16 NIAHNIREIR-RIT------GKNAE---IMGVVK-------ADAYGHGVMEVAKTLLENG 58
Query: 57 --K--LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
+ + + R+ +V + +G + +EI+ DV ++V A LS E
Sbjct: 59 ASRFAVSMLDEAIQLRREGIEVPILILGYTDPRRANEIIEN-DVTQSVFSHDLAQALSDE 117
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVEGLMC-IPPAMGNP 170
++Q + + ++I+++TG + + G +P V+ + + +EGL A
Sbjct: 118 AVRQGKKVKIHIKIDTG--MSRIGFLPGYSAVKNVVEISRLPNIIIEGLFTHFATADEKN 175
Query: 171 KPH----FYLLSEIA---RECKLTKLSMGMTRDFELAI----ASGATSVRIGSGIFGERP 219
+ + F I + + AI VR G ++G P
Sbjct: 176 REYTNTQFERFMSICCELQRIGIHIPVKHCAN--SAAIIEYPEMHLDMVRPGIILYGMYP 233
>gi|284923373|emb|CBG36467.1| alanine racemase like protein [Escherichia coli 042]
Length = 387
Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLAKAREVSAAAVKAGRVQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLIQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIAIEQLNAPSATSCTSLPLLAEYGVTHAEPGHALTGTIPA 265
>gi|219849394|ref|YP_002463827.1| alanine racemase [Chloroflexus aggregans DSM 9485]
gi|219543653|gb|ACL25391.1| alanine racemase [Chloroflexus aggregans DSM 9485]
Length = 811
Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 14/137 (10%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY 153
D++ T+ + TA LS ++ R V+I+V+TG + G+ P F+ R
Sbjct: 538 LDLMVTLFDDDTAQALSAAALELGRPARVHIKVDTGM--ARLGVSPAAVGPFLYYLRDLP 595
Query: 154 QLNVEGLMC--IPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT----- 206
+ GL +P+P + L ++ + + G+ A S AT
Sbjct: 596 GIEPVGLYTHFARADEADPEPTKHQL-QLLQTVLAEITAAGLRPPLVHAANSAATLRFPM 654
Query: 207 ----SVRIGSGIFGERP 219
VR G +G P
Sbjct: 655 TYFDMVRPGLACYGIAP 671
>gi|255013342|ref|ZP_05285468.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Bacteroides
sp. 2_1_7]
Length = 367
Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 32/178 (17%), Positives = 66/178 (37%), Gaps = 22/178 (12%)
Query: 6 KLQVFKQKIENSAILAKRPKDSV-SLVAVSKM-VDSKKIRVALSCGQVIF-----AENKL 58
L + +I + LAKR L K ++ R+ L G F AE
Sbjct: 17 ALAFYPDRISGNIELAKRIIGDTNRLRPHVKTNKAAEVSRMLLDAGIRKFKCATIAE--- 73
Query: 59 QEAKKKWIPLRKEWDVQLRF--IGSLQSNKVSEIVSLFDVIE---TVSREKTASLLSLEM 113
+ + DV L + +G + +++ +++ + V + + A +S
Sbjct: 74 ----AEMLGHMNAPDVLLAYQPVGP-KISRLLDLIKAYPATHYSCLVDQAENARAISALC 128
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171
+ L V+I +N G ++G++P + + V L + GL + + +
Sbjct: 129 EAGNITLDVFIDLNVGM--NRTGVLPERAEALVDAILPLRSLRIIGLHGYDGHIHDAE 184
>gi|331659669|ref|ZP_08360607.1| alanine racemase, N- domain protein [Escherichia coli TA206]
gi|315295891|gb|EFU55204.1| alanine racemase protein [Escherichia coli MS 16-3]
gi|331052884|gb|EGI24917.1| alanine racemase, N- domain protein [Escherichia coli TA206]
Length = 387
Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 58/163 (35%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREISAAAVKTGRLQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V + L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIQNLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIAIEQLNAPSATSCTSLPLLAEYGVTHTEPGHALTGTIPA 265
>gi|301019637|ref|ZP_07183795.1| alanine racemase protein [Escherichia coli MS 69-1]
gi|300399159|gb|EFJ82697.1| alanine racemase protein [Escherichia coli MS 69-1]
Length = 387
Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 20/151 (13%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----IQKSGIMPNQTKD 144
+ DVI TV A +S +K R V ++V + + Q+SG + + +
Sbjct: 116 AVAQGTDVI-TVFTLDKAREVSAAAVKAGRVQSVLLKVYSDDDFLYPGQESGFVQHSLHE 174
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC--------KLTKL 189
V ++ L++ GL P + + P P+ + L + + +L
Sbjct: 175 VVADIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLAKSGIAIEQLNAP 234
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERPC 220
S L G T G + G P
Sbjct: 235 SATSCTSLPLLAEYGVTHAEPGHALTGTIPA 265
>gi|332799232|ref|YP_004460731.1| alanine racemase [Tepidanaerobacter sp. Re1]
gi|332696967|gb|AEE91424.1| Alanine racemase [Tepidanaerobacter sp. Re1]
Length = 401
Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 36/245 (14%), Positives = 79/245 (32%), Gaps = 51/245 (20%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK-------MVDSKKIRVALSCGQVIFA 54
++ ++ K I + L+ V K M A+ G
Sbjct: 14 TISENIKTIKNYIGAT-----------RLLVVVKANAYGHGMYPVAAC--AVESGADYLG 60
Query: 55 ENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
+ L+E KE + I Q +E +D+ TV T L+
Sbjct: 61 VSSLEEGIFLRKSGIKEPVLVFNTILPEQ----AEDALNYDLTVTVCSFDTVQALNDAAA 116
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC-RQKYQLNVEGLMC---IPPAMGNP 170
K ++ ++ V + + G++P + V + + +EG+ +
Sbjct: 117 KMNK--KAFVHVKIDTGLGRFGVLPEHAVEMVHIITANFKNIYIEGIYTHFSLATNESIT 174
Query: 171 KPHFYLLSEIARECKLTKLSMGMTRDFELAIAS--GAT-----------SVRIGSGIFGE 217
+ F + I +E + + +++ + +T VR+G+ ++G
Sbjct: 175 RKQFNIFLSIIKELE--------HQGYKIPLKHVCNSTAMLNYAEMHLDMVRVGNLVYGL 226
Query: 218 RPCQT 222
P +
Sbjct: 227 CPSKN 231
>gi|310829658|ref|YP_003962015.1| alanine racemase [Eubacterium limosum KIST612]
gi|308741392|gb|ADO39052.1| alanine racemase [Eubacterium limosum KIST612]
Length = 399
Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 41/233 (17%), Positives = 78/233 (33%), Gaps = 33/233 (14%)
Query: 5 NKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVALSCGQVIFAENKLQE 60
L ++I+ +A ++ V K + G L E
Sbjct: 23 ENLLFNLEQIKKAAG------PEARIMGVVKADAYGHGVDVAELLQDEGVPCLGVAFLDE 76
Query: 61 AKKKWIPLRKEWDVQLRFI-GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
A D+ FI G ++++ E+V DV V + + A LS +
Sbjct: 77 AIALRQKGIDRCDL---FILGYTGADQIPELVEW-DVTPGVYQLEFAQALSDYCVANGSV 132
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL-- 177
PV+I+V+TG + G ++ + V+ + +EGL F L
Sbjct: 133 HPVHIKVDTGM--GRIGFRWDEAAEAVLKIADMPGIRIEGLYTHFATADEVDKDFTHLQL 190
Query: 178 ---SEIARECKLTKLSMGMTR--------DFELAIASGATSVRIGSGIFGERP 219
+++ + + + + DF+ + VR G ++G P
Sbjct: 191 TRYAQVVKALSDKGVEIPLKHVENSAAIIDFDKTVF---NMVRPGIILYGHYP 240
>gi|194014730|ref|ZP_03053347.1| alanine racemase [Bacillus pumilus ATCC 7061]
gi|194013756|gb|EDW23321.1| alanine racemase [Bacillus pumilus ATCC 7061]
Length = 393
Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 82/240 (34%), Gaps = 33/240 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MV-DSKKIRVALSCGQVIFAENK 57
+ L K+ IE AI A P+ S ++AV K + R AL G A
Sbjct: 10 IEVNLDAIKRNIE--AIQAHIPRKS-KIMAVVKANAYGHGSVEVARQALESGATELA--- 63
Query: 58 LQEAKKKWIPLRKEWDVQLRFIG--SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
+ ++ + R + + + +G L K D+ + RE + + +
Sbjct: 64 VASLEEGIVLRRAKIEAPILVLGFTPLDCVK-RAAAWRIDL--SGLREDWIVEANEILAE 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
+ + I VN + + G+ + V + L +G+ P P F
Sbjct: 121 EESQRRLGIHVNVDTGMGRLGVRTKEELLGVVEALEKSENLRWDGIFTHFSTADEPDPDF 180
Query: 175 YLLSE----------IARECKLTKLSMGMTRDFELAI---ASGATSVRIGSGIFGERPCQ 221
L R KL + M T AI A +R+G G++G P Q
Sbjct: 181 TQLQHSIFIDFLRFLKKRGIKLPTVHMNNTA---AAIVFPEFSADMIRLGIGLYGLYPSQ 237
>gi|87123851|ref|ZP_01079701.1| hypothetical amino acid racemase [Synechococcus sp. RS9917]
gi|86168420|gb|EAQ69677.1| hypothetical amino acid racemase [Synechococcus sp. RS9917]
Length = 361
Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 61/168 (36%), Gaps = 12/168 (7%)
Query: 26 DSVSLVAVSK-MVD-SKKIRVALSCGQVIFAENKLQEAKKKWIPLRKE-WDVQLRFIGSL 82
+ + VSK + + +R+ + G E+++ + L + V I S
Sbjct: 8 QGIKVTGVSKATLGMPEIVRIWIDAGVHSIGESRI----ESIESLSRCDLGVPRLLIRSP 63
Query: 83 QSNKVSEIVSLFDVIETVSREKTA-SLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
++V +V+ + + + E L+ ++Q V + V G + GI+P
Sbjct: 64 MLSQVDRVVAHAAM--SCNSEPVVIKALAGAAMRQGMSHGVLLMVELG--DLREGILPAD 119
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKL 189
+ V L L++ G+ P + E++R +
Sbjct: 120 MEAMVALTLALPGLDLVGIGTNLGCQNGVAPDAANMGELSRLISALEA 167
>gi|237731822|ref|ZP_04562303.1| alanine racemase [Citrobacter sp. 30_2]
gi|226907361|gb|EEH93279.1| alanine racemase [Citrobacter sp. 30_2]
Length = 356
Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 49/132 (37%), Gaps = 13/132 (9%)
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
L + + + K +L+ + L VY++VN+G + + G +P + R
Sbjct: 95 RLTTCVHSNWQLK-----ALQNARLKAPLDVYLKVNSG--MNRLGFLPERVPTVWQQLRA 147
Query: 152 KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI----ASGATS 207
+ LM +P+ ++ IA+ + + ++ A +
Sbjct: 148 MPNVGEMTLMSHFADAEHPEGIQEAMARIAQATEELECRRSLSN--SAATLWHPEAHYDW 205
Query: 208 VRIGSGIFGERP 219
VR G ++G P
Sbjct: 206 VRPGIILYGASP 217
>gi|56708810|ref|YP_164851.1| alanine racemase domain-containing protein [Ruegeria pomeroyi
DSS-3]
gi|56680495|gb|AAV97160.1| alanine racemase domain protein [Ruegeria pomeroyi DSS-3]
Length = 390
Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK- 152
+ + + + + + R L + ++V+ G + + G + +F +
Sbjct: 114 VHWL--IDSPERLAEYAALAAQSDRALRICLEVDIG--LHRGGFSLARAGEFAAALTRLR 169
Query: 153 --YQLNVEGLMCIPPA 166
L++ GLM P
Sbjct: 170 DDPNLHLTGLMGYEPH 185
>gi|134300698|ref|YP_001114194.1| alanine racemase [Desulfotomaculum reducens MI-1]
gi|226711040|sp|A4J8G6|ALR_DESRM RecName: Full=Alanine racemase
gi|134053398|gb|ABO51369.1| alanine racemase [Desulfotomaculum reducens MI-1]
Length = 370
Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 70/166 (42%), Gaps = 21/166 (12%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSK-------MVDSKKIRVALSCGQVIFAENKL 58
L+ + I+ + ++ ++AV K V ++ AL G A +L
Sbjct: 10 NLEAIRHNIKEIRKMVGPNRE---IMAVVKANGYGHGAVPVARV--ALEAGATRLAVARL 64
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA++ R V + +G + +++ + + +V TV R A ++ + +
Sbjct: 65 SEAQE---LRRAGLKVPILLLGYISPDQIGDALEY-NVTLTVFRFDLAKKIAAIAQGRGQ 120
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQ--TKDFVILCRQKYQLNVEGLMC 162
V+++V+TG + + G P++ + +C L+VEG+
Sbjct: 121 RATVHLKVDTG--MGRIGFTPDEEGLAEITAVCA-LNGLDVEGIYT 163
>gi|187476584|ref|YP_784608.1| diaminopimelate decarboxylase [Bordetella avium 197N]
gi|115421170|emb|CAJ47654.1| diaminopimelate decarboxylase [Bordetella avium 197N]
Length = 429
Score = 46.6 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 28/96 (29%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V LS + V ++VN + K GI +
Sbjct: 136 VESTAELHRLSKVAQATGKVARVSLRVNPDVDAQTHPYISTGLKENKFGIAIEEALAAYQ 195
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
L V G+ C I + + P+F L ++
Sbjct: 196 TAASLPGLQVVGVDCHIGSQLTDISPYFDALDKLLD 231
>gi|78186168|ref|YP_374211.1| alanine racemase region [Chlorobium luteolum DSM 273]
gi|78166070|gb|ABB23168.1| alanine racemase [Chlorobium luteolum DSM 273]
Length = 372
Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 41/242 (16%), Positives = 76/242 (31%), Gaps = 50/242 (20%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAENKLQE 60
+LQ ++ R K V L+AV K + + R L+ G F + E
Sbjct: 15 RLQHLQEN-----ARLIRKKAGVPLMAVVKANAYGHGARETARALLAEGIGHFGVANIHE 69
Query: 61 AKKKWIPLRKEWDVQ-----LRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
A + LR ++ L F L S S + ++ TV T
Sbjct: 70 AIE----LRTCGSLKRPAAILSFSSPLPSQIPSYLEHGIEM--TVCDPATLRAAEAVASG 123
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ V+++V+TG + G+ P + K + + + + G+ +
Sbjct: 124 AGATIGVHLKVDTGM--GRLGLSPAEAKQVLQELPRCPHIELRGIYT---HFADSSFDRA 178
Query: 176 LLSEIARECKLTKLSMGMTRDFELA-----IASGAT-------------SVRIGSGIFGE 217
+ + ++E A + A VR G ++G
Sbjct: 179 FTRKQLEAFRAFT------GEYEHASGRRVLKHAANSGAILSEPDATFDMVRPGILLYGC 232
Query: 218 RP 219
P
Sbjct: 233 HP 234
>gi|320181868|gb|EFW56774.1| hypothetical protein SGB_00813 [Shigella boydii ATCC 9905]
Length = 279
Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRIQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIAIEQLNAPSATSCTSLPLLAEYGVTHAEPGHALTGTIPA 265
>gi|330982763|gb|EGH80866.1| ribose operon repressor [Pseudomonas syringae pv. aptata str. DSM
50252]
Length = 62
Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 198 ELAIASGATSVRIGSGIFGERPC 220
E AIA GAT VRIG+ +FG R
Sbjct: 37 EAAIAQGATWVRIGTALFGARDY 59
>gi|157156148|ref|YP_001464835.1| alanine racemase family protein [Escherichia coli E24377A]
gi|193068735|ref|ZP_03049695.1| alanine racemase family [Escherichia coli E110019]
gi|300907483|ref|ZP_07125126.1| alanine racemase protein [Escherichia coli MS 84-1]
gi|300926939|ref|ZP_07142701.1| alanine racemase protein [Escherichia coli MS 182-1]
gi|301302255|ref|ZP_07208387.1| alanine racemase protein [Escherichia coli MS 124-1]
gi|301329676|ref|ZP_07222429.1| alanine racemase protein [Escherichia coli MS 78-1]
gi|157078178|gb|ABV17886.1| alanine racemase family protein [Escherichia coli E24377A]
gi|192957811|gb|EDV88254.1| alanine racemase family [Escherichia coli E110019]
gi|300400779|gb|EFJ84317.1| alanine racemase protein [Escherichia coli MS 84-1]
gi|300417055|gb|EFK00366.1| alanine racemase protein [Escherichia coli MS 182-1]
gi|300842418|gb|EFK70178.1| alanine racemase protein [Escherichia coli MS 124-1]
gi|300844255|gb|EFK72015.1| alanine racemase protein [Escherichia coli MS 78-1]
gi|315255967|gb|EFU35935.1| alanine racemase protein [Escherichia coli MS 85-1]
gi|320199549|gb|EFW74139.1| hypothetical protein ECoL_03126 [Escherichia coli EC4100B]
gi|323182840|gb|EFZ68241.1| alanine racemase, N-terminal domain protein [Escherichia coli 1357]
gi|332345331|gb|AEE58665.1| alanine racemase, N-terminal domain protein [Escherichia coli
UMNK88]
Length = 387
Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRVQFVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLIQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIALEQLNAPSATSCTSLPLLAEYGVTHAEPGHALTGTIPA 265
>gi|157691928|ref|YP_001486390.1| alanine racemase [Bacillus pumilus SAFR-032]
gi|157680686|gb|ABV61830.1| alanine racemase [Bacillus pumilus SAFR-032]
Length = 393
Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 49/240 (20%), Positives = 83/240 (34%), Gaps = 33/240 (13%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MV-DSKKIRVALSCGQVIFAENK 57
+ L K+ IE AI A P+ S ++AV K + R AL G A
Sbjct: 10 IEVNLDAIKRNIE--AIQAHIPRKS-KIMAVVKANAYGHGSVEVARQALESGATELA--- 63
Query: 58 LQEAKKKWIPLRKEWDVQLRFIG--SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
+ ++ + R + + + +G L K D+ + RE + + +
Sbjct: 64 VASLEEGIVLRRAKIEAPILVLGFTPLDCVK-RAAAWRIDL--SGLREDWIVEANEILAE 120
Query: 116 QSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
+ + I VN + + G+ + V + L +G+ P P F
Sbjct: 121 EESQRRLGIHVNVDTGMGRLGVRTKEELLGVVEALEKSENLRWDGIFTHFSTADEPDPDF 180
Query: 175 YLLSE----------IARECKLTKLSMGMTRDFELAI---ASGATSVRIGSGIFGERPCQ 221
LL + KL + M T AI A +R+G G++G P Q
Sbjct: 181 TLLQHSIFIDFLRFLKKQGIKLPTVHMNNTA---AAIAFPEFSADMIRLGIGLYGLYPSQ 237
>gi|191167914|ref|ZP_03029718.1| alanine racemase family [Escherichia coli B7A]
gi|309794644|ref|ZP_07689066.1| alanine racemase protein [Escherichia coli MS 145-7]
gi|190902087|gb|EDV61832.1| alanine racemase family [Escherichia coli B7A]
gi|308121694|gb|EFO58956.1| alanine racemase protein [Escherichia coli MS 145-7]
Length = 387
Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRVQFVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLIQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIALEQLNAPSATSCTSLPLLAEYGVTHAEPGHALTGTIPA 265
>gi|309790096|ref|ZP_07684669.1| alanine racemase [Oscillochloris trichoides DG6]
gi|308227821|gb|EFO81476.1| alanine racemase [Oscillochloris trichoides DG6]
Length = 845
Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 14/125 (11%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC--I 163
A LS R + V+I+V+TG + G++ ++ F+ + Q L + GL
Sbjct: 584 ALALSRAAQSAGRPVRVHIKVDTGM--ARLGLVHSEVGPFLTVLHQLPGLEIHGLYTHFA 641
Query: 164 PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT---------SVRIGSGI 214
+ + L E ++ G+ A S AT VR G
Sbjct: 642 SADEADLRAAQAQL-ERFNHLLADLVAAGLRPPLVHAANSAATLRLPAARFDMVRPGIAC 700
Query: 215 FGERP 219
+G P
Sbjct: 701 YGLNP 705
>gi|300815426|ref|ZP_07095651.1| alanine racemase protein [Escherichia coli MS 107-1]
gi|300532318|gb|EFK53380.1| alanine racemase protein [Escherichia coli MS 107-1]
Length = 387
Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRVQFVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLIQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIALEQLNAPSATSCTSLPLLAEYGVTHAEPGHALTGTIPA 265
>gi|52079158|ref|YP_077949.1| putative alanine racemase [Bacillus licheniformis ATCC 14580]
gi|52784525|ref|YP_090354.1| hypothetical protein BLi00725 [Bacillus licheniformis ATCC 14580]
gi|52002369|gb|AAU22311.1| putative alanine racemase [Bacillus licheniformis ATCC 14580]
gi|52347027|gb|AAU39661.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580]
Length = 383
Score = 46.6 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 54/173 (31%), Gaps = 25/173 (14%)
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K + + + I ++ + D + TV + A ++ K R V+
Sbjct: 98 KIGHVGHLVQIPIHMIPAI-------LELHPDYV-TVFSLENAQNINRVAKKMGRKQKVF 149
Query: 124 IQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP--------PAMGNPK 171
+++ + Q+ G Q + Q L + GL P PA+
Sbjct: 150 LRIANKEDYIYKGQEGGFTFEQIVKDIESIEQLEGLEIAGLTSFPCILIQDGLPAVTPNV 209
Query: 172 PHFYLLSEIARECKLTKLSMGMTR-----DFELAIASGATSVRIGSGIFGERP 219
+ E KL M M +L +GAT G + G P
Sbjct: 210 ASMQTVKSFLMERGYKKLEMNMPSATSCATMKLLKENGATQGEPGHALIGTTP 262
>gi|331685019|ref|ZP_08385605.1| alanine racemase, N- domain protein [Escherichia coli H299]
gi|331077390|gb|EGI48602.1| alanine racemase, N- domain protein [Escherichia coli H299]
Length = 387
Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 20/151 (13%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----IQKSGIMPNQTKD 144
+ DVI TV A +S +K R V ++V + + Q+SG + + +
Sbjct: 116 AVAQGTDVI-TVFTLDKAREVSAAAVKAGRVQSVLLKVYSDDDFLYPGQESGFVQHSLHE 174
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC--------KLTKL 189
V ++ L++ GL P + + P P+ + L + + +L
Sbjct: 175 VVADIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLIQARDQLAKSGIAIEQLNAP 234
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERPC 220
S L G T G + G P
Sbjct: 235 SATSCTSLPLLAEYGVTHAEPGHALTGTIPA 265
>gi|183599355|ref|ZP_02960848.1| hypothetical protein PROSTU_02822 [Providencia stuartii ATCC 25827]
gi|188021591|gb|EDU59631.1| hypothetical protein PROSTU_02822 [Providencia stuartii ATCC 25827]
Length = 407
Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 25/145 (17%)
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF--VIL 148
+ +DV E + A L+ KQ++ +P+++ +N+ + ++G+ + + +
Sbjct: 131 ATAYDVEELIGNLDMAQRLNDIGKKQNKVIPIHLALNSAG-MSRNGLEVSHAQGLNDAKM 189
Query: 149 CRQKYQLNVEGLMCIPPAMGNP--KPHFYLLSEIARE-CKLTKLSMGMTRDFELAIASGA 205
Q QL V G+M P + + +++ +T L E I A
Sbjct: 190 IAQLPQLKVVGIMSHYPEEDEAQIRKDLAKFKKQSQQVLDVTGLKR------EDVILHVA 243
Query: 206 T-------------SVRIGSGIFGE 217
VR+G +G+
Sbjct: 244 NTYATITVPESWLDMVRVGGIFYGD 268
>gi|319647068|ref|ZP_08001294.1| hypothetical protein HMPREF1012_02332 [Bacillus sp. BT1B_CT2]
gi|317390892|gb|EFV71693.1| hypothetical protein HMPREF1012_02332 [Bacillus sp. BT1B_CT2]
Length = 383
Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 54/173 (31%), Gaps = 25/173 (14%)
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
K + + + I ++ + D + TV + A ++ K R V+
Sbjct: 98 KIGHVGHLVQIPIHMIPAI-------LELHPDYV-TVFSLENAQNINRVAKKMGRKQKVF 149
Query: 124 IQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP--------PAMGNPK 171
+++ + Q+ G Q + Q L + GL P PA+
Sbjct: 150 LRIANKEDYIYKGQEGGFTFEQIVKDIESIEQLEGLEIAGLTSFPCILIQDGLPAVTPNV 209
Query: 172 PHFYLLSEIARECKLTKLSMGMTR-----DFELAIASGATSVRIGSGIFGERP 219
+ E KL M M +L +GAT G + G P
Sbjct: 210 ASMQTVKSFLMERGYKKLEMNMPSATSCATMKLLKENGATQGEPGHALIGTTP 262
>gi|78211897|ref|YP_380676.1| alanine racemase [Synechococcus sp. CC9605]
gi|78196356|gb|ABB34121.1| alanine racemase [Synechococcus sp. CC9605]
Length = 376
Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 39/233 (16%), Positives = 71/233 (30%), Gaps = 32/233 (13%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKI-RVALSCGQVIFAENKLQEAK 62
+ + L+AV K ++ + R AL G LQE
Sbjct: 18 AAIRANARALCQHLG--PRT-QLMAVVKADGYGHGAETVARAALQGGATSLGVATLQEGL 74
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE-----TVSREKTASLLSLEMIKQS 117
+ + + L + ++E L + T+S + A L +
Sbjct: 75 ELRRAGLEAPVLLL--------SNLNEPDDLRTCLHWRLMPTLSSLRDAQLCNALAADSG 126
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
R V Q+ + + G ++ + + LN+EG+ P L
Sbjct: 127 RCFDV--QLKIDTGMARLGCSLSEGHQTAAVLQSLEHLNLEGIYSHLACADEPDDALTSL 184
Query: 178 SEIARECKLTKLSMGMTR-DFELAIASGA--------TSVRIGSGIFGERPCQ 221
+ L+ L G LA ++G VR+G ++G P
Sbjct: 185 QQERFVSMLSALPRGGAGITRHLANSAGTLLNRELHHDLVRVGLALYGHAPAS 237
>gi|324111691|gb|EGC05671.1| alanine racemase domain-containing protein [Escherichia fergusonii
B253]
Length = 387
Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRVQFVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLIQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIAIEQLNAPSATSCTSLPLLAEYGVTHAEPGHALTGTIPA 265
>gi|320197335|gb|EFW71950.1| hypothetical protein EcoM_00350 [Escherichia coli WV_060327]
Length = 387
Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 20/151 (13%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----IQKSGIMPNQTKD 144
+ DVI TV A +S ++ R V ++V + + Q+SG + + +
Sbjct: 116 AVAQGTDVI-TVFTLDKAREVSAAAVEAGRVQSVLLKVYSDDDFLYPGQESGFVQHSLHE 174
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC--------KLTKL 189
V + L++ GL P + + P P+ + L + + +L
Sbjct: 175 VVAEIQNLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLAKSGIAIEQLNAP 234
Query: 190 SMGMTRDFELAIASGATSVRIGSGIFGERPC 220
S L G T G + G P
Sbjct: 235 SATSCTSLPLLAEYGVTHTEPGHALTGTIPA 265
>gi|170744100|ref|YP_001772755.1| alanine racemase domain-containing protein [Methylobacterium sp.
4-46]
gi|168198374|gb|ACA20321.1| alanine racemase domain protein [Methylobacterium sp. 4-46]
Length = 359
Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 42/128 (32%), Gaps = 12/128 (9%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM-PNQTKDFVILCRQKYQLNV 157
+ + L R L V ++ +TG ++G+ P + L
Sbjct: 112 SADHPAVVAGLGEAAAAAGRPLAVMVECDTGR--ARAGVARPEEAVALARQIAGTPSLRF 169
Query: 158 EGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR-------DFELAIASGATSVRI 210
GL+ PP G L + + L G+ A+ GAT R
Sbjct: 170 AGLLLYPPEDGVAATQ-AFLDRVRQGLAGEGLEAGIVSTGGTPNLRHLGAVR-GATEHRA 227
Query: 211 GSGIFGER 218
G+ IF +R
Sbjct: 228 GTVIFNDR 235
>gi|290476786|ref|YP_003469697.1| Alanine racemase 2 [Xenorhabdus bovienii SS-2004]
gi|289176130|emb|CBJ82935.1| Alanine racemase 2 [Xenorhabdus bovienii SS-2004]
Length = 410
Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 54/136 (39%), Gaps = 15/136 (11%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM--PNQTKDFVILCRQ 151
+D+ E V + A + K + + V++ +NTG + ++G+ Q K + Q
Sbjct: 134 YDMEEMVGDLEHAKTIDALAKKHGKAIRVHLVLNTG-RMSRNGLEMKTEQGKQEALKIAQ 192
Query: 152 KYQLNVEGLM---------CIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFE--LA 200
L + G+M I + + K L + A K ++ + + +
Sbjct: 193 LPNLKLVGMMSHYALKDLDAIREGVNDFKEQTAWLIKTA-NLKRNEIILHASSSYASIRV 251
Query: 201 IASGATSVRIGSGIFG 216
+ VR+GS ++G
Sbjct: 252 PEAQFDMVRVGSALYG 267
>gi|222080194|ref|YP_002540057.1| alanine racemase [Agrobacterium vitis S4]
gi|221738839|gb|ACM39618.1| alanine racemase [Agrobacterium vitis S4]
Length = 294
Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 35/192 (18%), Positives = 69/192 (35%), Gaps = 21/192 (10%)
Query: 39 SKKI-RVALSCGQVIFAENKL-Q--EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV--S 92
++++ R + G F + Q EA + L +D ++ + LQ +
Sbjct: 60 AERVARTLYAKGCRHF---FVAQFIEATRLRPALS--YDARIFVLNGLQPGNEDVCAYEN 114
Query: 93 LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK 152
+ VI ++ + + + + R LP+ +Q +TG + G+ P + Q
Sbjct: 115 IVPVINSMDQWR---NRNRTARRLGRRLPIVVQFDTGM--SRLGLPPEERPLLAEAVAQG 169
Query: 153 YQLNVEGLMCIPPAMGNPK-----PHFYLLSEIARECKLTKLSMGMTRDFELAIASGATS 207
+++ LM + + K L +IA E LS + L
Sbjct: 170 SDVDILFLMSHLASADDEKSAQNGEQLEELRKIAAEFPGYDLSFANSGGIFLGDDYRGLL 229
Query: 208 VRIGSGIFGERP 219
R G ++G P
Sbjct: 230 ARPGIALYGGAP 241
>gi|218706971|ref|YP_002414490.1| putative amino acid racemase [Escherichia coli UMN026]
gi|293406959|ref|ZP_06650883.1| conserved hypothetical protein [Escherichia coli FVEC1412]
gi|298382701|ref|ZP_06992296.1| yhfX protein [Escherichia coli FVEC1302]
gi|300896537|ref|ZP_07115059.1| alanine racemase protein [Escherichia coli MS 198-1]
gi|218434068|emb|CAR14985.1| putative amino acid racemase [Escherichia coli UMN026]
gi|291425770|gb|EFE98804.1| conserved hypothetical protein [Escherichia coli FVEC1412]
gi|298276537|gb|EFI18055.1| yhfX protein [Escherichia coli FVEC1302]
gi|300359610|gb|EFJ75480.1| alanine racemase protein [Escherichia coli MS 198-1]
Length = 387
Score = 46.2 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAWEVSAAAVKAGRVQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKALPTPNLHTLVQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIAIEQLNAPSATSCTSLPLLAEYGVTHAEPGHALTGTIPA 265
>gi|118472399|ref|YP_885954.1| alanine racemase [Mycobacterium smegmatis str. MC2 155]
gi|3913029|sp|P94967|ALR_MYCSM RecName: Full=Alanine racemase
gi|166969419|sp|A0QSR6|ALR_MYCS2 RecName: Full=Alanine racemase
gi|1813550|gb|AAC45589.1| D-alanine racemase [Mycobacterium smegmatis]
gi|118173686|gb|ABK74582.1| alanine racemase [Mycobacterium smegmatis str. MC2 155]
Length = 389
Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 17/135 (12%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ---L 155
VS + ++ + R V ++V+TG + ++G+ + + + R+ +
Sbjct: 111 AVSSRRQLEQVTAAAAEVGRTATVTVKVDTG--LSRNGVGAADYPEVLDVLRRAQADGAI 168
Query: 156 NVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA---------- 205
V GLM +P+ F L R + + D+E+A +
Sbjct: 169 RVRGLMSHLVHGDDPENPFNGLQG-QRLADMRVYAREHGVDYEVAHLCNSPAAMTRPDLA 227
Query: 206 -TSVRIGSGIFGERP 219
VR G ++G P
Sbjct: 228 FEMVRPGISLYGLSP 242
>gi|306816281|ref|ZP_07450419.1| putative amino acid racemase [Escherichia coli NC101]
gi|305850677|gb|EFM51134.1| putative amino acid racemase [Escherichia coli NC101]
Length = 387
Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++VS+ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVSDAVEQGTDVITVFTLDKAREISAAAVKTGRLQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V + L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIQNLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIAIEQLNAPSATSCTSLPLLAEYGVTHTEPGHALTGTIPA 265
>gi|302337870|ref|YP_003803076.1| alanine racemase [Spirochaeta smaragdinae DSM 11293]
gi|301635055|gb|ADK80482.1| alanine racemase [Spirochaeta smaragdinae DSM 11293]
Length = 371
Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 45/136 (33%), Gaps = 12/136 (8%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY 153
FD+I VS + E Q + V+++V+TG + G P +
Sbjct: 94 FDIIPFVSDLAYIKQIEREAQNQEKVAMVHLKVDTGM--GRLGCRPEEALSLASFVGNSK 151
Query: 154 QLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKL-SMGMTRDFELAIASGA------- 205
L + GL + LL + L S + A +GA
Sbjct: 152 NLMMGGLCTHFSLSDISDRAYTLLQINRLNLLVDTLRSQHIPYGLVHAANTGAIIQYPEA 211
Query: 206 --TSVRIGSGIFGERP 219
VR G GIFG P
Sbjct: 212 YYDMVRPGLGIFGYPP 227
>gi|260857488|ref|YP_003231379.1| putative amino acid racemase [Escherichia coli O26:H11 str. 11368]
gi|260870107|ref|YP_003236509.1| putative amino acid racemase [Escherichia coli O111:H- str. 11128]
gi|257756137|dbj|BAI27639.1| predicted amino acid racemase [Escherichia coli O26:H11 str. 11368]
gi|257766463|dbj|BAI37958.1| predicted amino acid racemase [Escherichia coli O111:H- str. 11128]
gi|323154209|gb|EFZ40412.1| alanine racemase, N-terminal domain protein [Escherichia coli
EPECa14]
gi|323179095|gb|EFZ64669.1| alanine racemase, N-terminal domain protein [Escherichia coli 1180]
Length = 387
Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 59/163 (36%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRVQFVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S + G T G + G P
Sbjct: 223 KSGIAIEQLNAPSATSCTSLPMLAEYGVTHAEPGHALTGTIPA 265
>gi|255022901|ref|ZP_05294887.1| pyridoxal phosphate enzyme, YggS family protein [Listeria
monocytogenes FSL J1-208]
Length = 37
Score = 46.2 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKM 36
M+ LQ +IE + + R V+LVAV+K
Sbjct: 1 MTKQANLQKVTAQIERACEESNRQAKDVTLVAVNKN 36
>gi|120402493|ref|YP_952322.1| alanine racemase [Mycobacterium vanbaalenii PYR-1]
gi|166969421|sp|A1T566|ALR_MYCVP RecName: Full=Alanine racemase
gi|119955311|gb|ABM12316.1| alanine racemase [Mycobacterium vanbaalenii PYR-1]
Length = 390
Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 29/154 (18%), Positives = 48/154 (31%), Gaps = 38/154 (24%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ---L 155
VS + + L + R V ++ +TG + ++G+ V R+ +
Sbjct: 111 AVSSLRQFTDLLDAAGRTGRTADVTVKADTG--LSRNGVGEADYPALVDALRRAASDGAV 168
Query: 156 NVEGLMCIPPAMGNPKPHF-----YLLSEIARECKLTKLSMG-----------MTRDFEL 199
V GLM +P+ F L+E+A+ +S D
Sbjct: 169 RVRGLMSHLAHGDDPEHPFNDVQARRLTEMAKLAGARGVSYDVVHLSNSPAALTRPDLAF 228
Query: 200 AIASGATSVRIGSGI-----------FGERPCQT 222
VR G + FG RP T
Sbjct: 229 ------DMVRPGIAVYGQTPIPQRGDFGLRPAMT 256
>gi|222035083|emb|CAP77828.1| Uncharacterized protein yhfX [Escherichia coli LF82]
gi|312947929|gb|ADR28756.1| putative amino acid racemase [Escherichia coli O83:H1 str. NRG
857C]
Length = 387
Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++VS+ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVSDAVEQGTDVITVFTLDKAREISAAAVKTGRLQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V + L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIQNLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIAIEQLNAPSATSCTSLPLLAEYGVTHTEPGHALTGTIPA 265
>gi|309785884|ref|ZP_07680515.1| uncharacterized protein yhfX [Shigella dysenteriae 1617]
gi|308927004|gb|EFP72480.1| uncharacterized protein yhfX [Shigella dysenteriae 1617]
Length = 216
Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 45/138 (32%), Gaps = 19/138 (13%)
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQLNV 157
A +S +K R V ++V + + Q+SG + V + +L++
Sbjct: 3 TLDKAREVSAAAVKAGRIQSVLLKVYSDDDFLYPGQESGFALKVLPEIVAEIQNLPRLHL 62
Query: 158 EGLMCIPPAMGN-------PKPHFYLLSEIAREC--------KLTKLSMGMTRDFELAIA 202
GL P + + P P+ + L + + +L S L
Sbjct: 63 AGLTHFPCLLWDEAAGKVLPTPNLHSLVQARDQLAKSGIAIEQLNAPSATSCTSLPLLAQ 122
Query: 203 SGATSVRIGSGIFGERPC 220
G T G + G P
Sbjct: 123 YGVTHAEPGHALTGTIPA 140
>gi|229059775|ref|ZP_04197152.1| Alanine racemase [Bacillus cereus AH603]
gi|228719604|gb|EEL71205.1| Alanine racemase [Bacillus cereus AH603]
Length = 408
Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 37/242 (15%), Positives = 89/242 (36%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 34 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKSAIEAGINQLAVA 84
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + V + +G V +++ DV+ TV R + +
Sbjct: 85 FVDEAIE---LREAGITVPILILGYTPVAAVEDVIQY-DVMMTVYRVEDLQGIDEVANHL 140
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ + ++++++TG + G+ + K F ++ + V G+
Sbjct: 141 QKKVRIHVKIDTGM--SRIGLQEEEVKPFFEELKRMRYVEVVGMFTHYSTADEIDKTYTN 198
Query: 173 ----HFYLLSEIARECKL---------TKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A E + + SM ++ F+ VR+G GI+G P
Sbjct: 199 MQTNLFEKAVNTAEELGIHFPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 251
Query: 220 CQ 221
+
Sbjct: 252 SR 253
>gi|229011407|ref|ZP_04168598.1| Alanine racemase [Bacillus mycoides DSM 2048]
gi|229166972|ref|ZP_04294719.1| Alanine racemase [Bacillus cereus AH621]
gi|228616600|gb|EEK73678.1| Alanine racemase [Bacillus cereus AH621]
gi|228749924|gb|EEL99758.1| Alanine racemase [Bacillus mycoides DSM 2048]
Length = 408
Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 37/242 (15%), Positives = 89/242 (36%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 34 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKSAIEAGINQLAVA 84
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + V + +G V +++ DV+ TV R + +
Sbjct: 85 FVDEAIE---LREAGITVPILILGYTPVAAVEDVIQY-DVMMTVYRVEDLQGIDEVANHL 140
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ + ++++++TG + G+ + K F ++ + V G+
Sbjct: 141 QKKVRIHVKIDTGM--SRIGLQEEEVKPFFEELKRMRYVEVVGMFTHYSTADEIDKTYTN 198
Query: 173 ----HFYLLSEIARECKL---------TKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A E + + SM ++ F+ VR+G GI+G P
Sbjct: 199 MQTSLFEKAVNTAEELGIHFPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 251
Query: 220 CQ 221
+
Sbjct: 252 SR 253
>gi|260829763|ref|XP_002609831.1| hypothetical protein BRAFLDRAFT_78677 [Branchiostoma floridae]
gi|229295193|gb|EEN65841.1| hypothetical protein BRAFLDRAFT_78677 [Branchiostoma floridae]
Length = 336
Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 45/133 (33%), Gaps = 19/133 (14%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVE 158
V ++ LS + + V + VN G + G++P + L + ++
Sbjct: 104 VDSQQNIRDLSDAAQQMGVDIGVLVDVNVGM--PRCGVLPGPEVVQLASLINSLPNVTLK 161
Query: 159 GLMCIPPAMGNPK--------------PHFYLLSEIAR-ECKLTKLSMGMTRDFELAIAS 203
GL C A + + L + E ++ G T + S
Sbjct: 162 GLHCYQGANQHIRKAEERAEATAAAVEKAATALKALEDAEISCDYVTGGGTGTYMYEAKS 221
Query: 204 GA-TSVRIGSGIF 215
G T V+ GS +F
Sbjct: 222 GVFTEVQPGSYVF 234
>gi|163939906|ref|YP_001644790.1| alanine racemase [Bacillus weihenstephanensis KBAB4]
gi|229132940|ref|ZP_04261783.1| Alanine racemase [Bacillus cereus BDRD-ST196]
gi|163862103|gb|ABY43162.1| alanine racemase [Bacillus weihenstephanensis KBAB4]
gi|228650522|gb|EEL06514.1| Alanine racemase [Bacillus cereus BDRD-ST196]
Length = 408
Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 37/242 (15%), Positives = 89/242 (36%), Gaps = 44/242 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++ + ++ FK+++ + ++++++A K + + + A+ G A
Sbjct: 34 AVKHNVKEFKKRVND---------ENIAMMAAVKANGYGHGAVEVAKSAIEAGINQLAVA 84
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + V + +G V +++ DV+ TV R + +
Sbjct: 85 FVDEAIE---LREAGITVPILILGYTPVAAVEDVIQY-DVMMTVYRVEDLQGIDEVANHL 140
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP---- 172
+ + ++++++TG + G+ + K F ++ + V G+
Sbjct: 141 QKKVRIHVKIDTGM--SRIGLQEEEVKPFFEELKRMRYVEVVGMFTHYSTADEIDKTYTN 198
Query: 173 ----HFYLLSEIARECKL---------TKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
F A E + + SM ++ F+ VR+G GI+G P
Sbjct: 199 MQTSLFEKAVNTAEELGIHFPYIHSSNSAGSMELSNTFQ-------NMVRVGIGIYGMYP 251
Query: 220 CQ 221
+
Sbjct: 252 SR 253
>gi|260576176|ref|ZP_05844169.1| alanine racemase domain protein [Rhodobacter sp. SW2]
gi|259021656|gb|EEW24959.1| alanine racemase domain protein [Rhodobacter sp. SW2]
Length = 372
Score = 45.8 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 12/159 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIR----VALSCGQVIFAENKLQEAK 62
L + I +++ ++ V L KM S +I A +CG K+ EA+
Sbjct: 30 LDALEANI--ASMQSQADAAGVRLRVHGKMHKSAEIAQMQIAAGACGICC---QKVSEAE 84
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIET-VSREKTASLLSLEMIKQSRFLP 121
++ + + G++++++++ + L I T V + LS + +
Sbjct: 85 AFARAGLRDILITNQVRGAVKTDRLARLPLLGARILTCVDDPANVAELSAAAQRHGTEIE 144
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
V ++++ G + G+ P+Q L GL
Sbjct: 145 VLVEIDCG--AGRCGVAPDQAPGLAQAIVAAPGLRFAGL 181
>gi|78189076|ref|YP_379414.1| diaminopimelate decarboxylase [Chlorobium chlorochromatii CaD3]
gi|78171275|gb|ABB28371.1| diaminopimelate decarboxylase [Chlorobium chlorochromatii CaD3]
Length = 418
Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 14/105 (13%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVIL 148
+++ +Q + + +++N TG +K GI D L
Sbjct: 128 ESVSELHVINRIAAEQGKIASIALRINPNVTAETHPYITTGDSKEKFGIDEADLADLFAL 187
Query: 149 CRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECKLTKLSMG 192
RQ + + GL M I + +P+ + +++ L+K SMG
Sbjct: 188 IRQLPHVRLIGLDMHIGSQIFDPEYYVAATTKLLALFNLSK-SMG 231
>gi|222107011|ref|YP_002547802.1| alanine racemase [Agrobacterium vitis S4]
gi|221738190|gb|ACM39086.1| alanine racemase [Agrobacterium vitis S4]
Length = 374
Score = 45.8 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 37/188 (19%), Positives = 65/188 (34%), Gaps = 24/188 (12%)
Query: 44 VALSCGQVIF--AENKLQEAKKKWIPLRKEWDVQLRFI-GSLQSNKVSEIVSLFDVIETV 100
G F A N +QEA L + ++ FI LQ + I +
Sbjct: 60 ALYRAGCRKFFVA-N-VQEAAGLRQHLPGDAEL---FILNGLQPGAEPFAAAN-GFIPVL 113
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ + + S + R LP +Q +TG + G P + L++ +
Sbjct: 114 NSLEQLANWSKMASEFGRTLPAILQFDTGM--SRLGFSPEEANVLAGDPALLSGLSIRYI 171
Query: 161 MCIPPAMGNP-----KPHFYLLSE-IARECKLTKL---SMGMTRDFELAIASGATSVRIG 211
M + + F ++ E +A+ + S G+ D + GA VR G
Sbjct: 172 MSHLASADDSASTQNAAQFSVMRERLAQFPGIALCFSNSGGIFIDKQF---HGA-LVRPG 227
Query: 212 SGIFGERP 219
++G P
Sbjct: 228 VALYGAVP 235
>gi|170018383|ref|YP_001723337.1| alanine racemase domain-containing protein [Escherichia coli ATCC
8739]
gi|169753311|gb|ACA76010.1| alanine racemase domain protein [Escherichia coli ATCC 8739]
Length = 387
Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRVQFVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLIQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIAIEQLNAPSATSCTSLPLLAQYGVTHAEPGHALTGTIPA 265
>gi|194439503|ref|ZP_03071578.1| alanine racemase domain protein [Escherichia coli 101-1]
gi|253771792|ref|YP_003034623.1| alanine racemase domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254163309|ref|YP_003046417.1| putative amino acid racemase [Escherichia coli B str. REL606]
gi|300931093|ref|ZP_07146446.1| alanine racemase protein [Escherichia coli MS 187-1]
gi|194421589|gb|EDX37601.1| alanine racemase domain protein [Escherichia coli 101-1]
gi|242378907|emb|CAQ33702.1| predicted amino acid racemase [Escherichia coli BL21(DE3)]
gi|253322836|gb|ACT27438.1| alanine racemase domain protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975210|gb|ACT40881.1| predicted amino acid racemase [Escherichia coli B str. REL606]
gi|253979366|gb|ACT45036.1| predicted amino acid racemase [Escherichia coli BL21(DE3)]
gi|300461076|gb|EFK24569.1| alanine racemase protein [Escherichia coli MS 187-1]
gi|323959620|gb|EGB55272.1| alanine racemase domain-containing protein [Escherichia coli H489]
gi|323969978|gb|EGB65253.1| alanine racemase domain-containing protein [Escherichia coli TA007]
Length = 387
Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRVQFVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLIQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIALEQLNAPSATSCTSLPLLAQYGVTHAEPGHALTGTIPA 265
>gi|82545736|ref|YP_409683.1| hypothetical protein SBO_3368 [Shigella boydii Sb227]
gi|187732423|ref|YP_001882056.1| alanine racemase family [Shigella boydii CDC 3083-94]
gi|81247147|gb|ABB67855.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|187429415|gb|ACD08689.1| alanine racemase family [Shigella boydii CDC 3083-94]
gi|320175746|gb|EFW50832.1| hypothetical protein SDB_01737 [Shigella dysenteriae CDC 74-1112]
gi|320186752|gb|EFW61475.1| hypothetical protein SGF_01059 [Shigella flexneri CDC 796-83]
gi|332090276|gb|EGI95374.1| alanine racemase, N-terminal domain protein [Shigella boydii
3594-74]
Length = 387
Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRVQFVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLIQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIALEQLNAPSATSCTSLPLLAQYGVTHAEPGHALTGTIPA 265
>gi|218550637|ref|YP_002384428.1| amino acid racemase [Escherichia fergusonii ATCC 35469]
gi|218358178|emb|CAQ90825.1| putative amino acid racemase [Escherichia fergusonii ATCC 35469]
Length = 387
Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S + R PV ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVTAGRVQPVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
Q+SG + + V ++ L++ GL P + +
Sbjct: 163 QESGFAQHSLHEVVAEIQKLPGLHLAGLTHFPCLLWDEAA 202
>gi|187779310|ref|ZP_02995783.1| hypothetical protein CLOSPO_02906 [Clostridium sporogenes ATCC
15579]
gi|187772935|gb|EDU36737.1| hypothetical protein CLOSPO_02906 [Clostridium sporogenes ATCC
15579]
Length = 386
Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 7/116 (6%)
Query: 64 KWIPLRKEWDVQLRFIGSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K KE ++ L +G L Q ++ + +I+ + TV + A +S K
Sbjct: 87 KEAITLKENNISLGHVGHLVQIPTHSMEDIIEAKPEVITVYSVEKAVEVSKVAQKLGLVQ 146
Query: 121 PVYIQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
+ I+V + Q G + ++ +N+ G+ P + + K
Sbjct: 147 NIMIRVLDDEDTLYPAQYGGFYLKDLIEKAKEIKKLPNINIYGITSFPCFLYDEKE 202
>gi|153008332|ref|YP_001369547.1| diaminopimelate decarboxylase [Ochrobactrum anthropi ATCC 49188]
gi|151560220|gb|ABS13718.1| diaminopimelate decarboxylase [Ochrobactrum anthropi ATCC 49188]
Length = 421
Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E +LS +K + V +++N TG K GI + ++
Sbjct: 124 VESEPELEILSARAVKAGKVASVSLRINPDVDAKTHAKISTGKSENKFGIPRVKAREAYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIARECKLT 187
L+V G+ M I + + +P F L++++ +E +
Sbjct: 184 RAASLPGLDVVGIDMHIGSQIIDLEPFDNAFALMAQLVKELQAD 227
>gi|302392467|ref|YP_003828287.1| alanine racemase domain protein [Acetohalobium arabaticum DSM 5501]
gi|302204544|gb|ADL13222.1| alanine racemase domain protein [Acetohalobium arabaticum DSM 5501]
Length = 360
Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 61/151 (40%), Gaps = 11/151 (7%)
Query: 12 QKIENSAILAKRPKDSVSLVAVSKMVDSK-KIRVA-LSCGQVIFAENKLQEAKKKWIPLR 69
++I N A + + ++ V+K V + KI A L+ G A+++++ K L
Sbjct: 18 ERIVNLA-----DSEDIEIIGVTKSVCADIKIAEAMLAGGVDGLADSRIKNLKYMQENLV 72
Query: 70 KEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
D+ L + ++V +V D I S + L + ++ + + V+ G
Sbjct: 73 S-PDIPLMLLRIPMISEVDRVVEYAD-ISLNSELEVIKALDQVAKEMNQKHRIILMVDVG 130
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
++ G+MP D + + GL
Sbjct: 131 --DRREGVMPEDVIDIAAEILDLENIELTGL 159
>gi|242399549|ref|YP_002994974.1| Alanine racemase, N-terminal [Thermococcus sibiricus MM 739]
gi|242265943|gb|ACS90625.1| Alanine racemase, N-terminal [Thermococcus sibiricus MM 739]
Length = 354
Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 34/192 (17%), Positives = 77/192 (40%), Gaps = 27/192 (14%)
Query: 6 KLQVFKQ---KIENSAILAKRPKDSVSLVAVSKMV--DSKKIRVALSCGQVIFAENKLQE 60
L + ++ +++V ++K + K + L G I ++++Q
Sbjct: 8 NLSAIEDNVRRVVEFCTSYG-----INVVGITKGACGEPKVAKAILRGGVQILGDSRIQN 62
Query: 61 AKK-KWIPLRKEWD-VQLRFIGSLQSNKVSEIVSLFDVIETVSR-EKTASLLSLEMIKQS 117
K K ++ E+ ++ I ++S +V + +++ K LS ++
Sbjct: 63 IIKMKESNVKAEFMLIRSPMISEVES-----VVKYAEY--SLNSELKVLEQLSKASLEYG 115
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG----LMCIPPAMGNPKPH 173
R I V+ G ++ GIMPN+ F+ ++ + + G L C + P+ H
Sbjct: 116 RRHKAIIMVDVG--DRREGIMPNEFVPFLKEAKKLKGVEIVGVGTNLGCFGGVLPTPRNH 173
Query: 174 FYLLSEIARECK 185
+L ++ + K
Sbjct: 174 -EMLKKLTEKVK 184
>gi|160935746|ref|ZP_02083121.1| hypothetical protein CLOBOL_00636 [Clostridium bolteae ATCC
BAA-613]
gi|158441490|gb|EDP19200.1| hypothetical protein CLOBOL_00636 [Clostridium bolteae ATCC
BAA-613]
Length = 370
Score = 45.4 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 33/214 (15%), Positives = 67/214 (31%), Gaps = 31/214 (14%)
Query: 8 QVFKQKIENSAILAKRPKDSVSLVAVSKMV-DSKKIRVALSCGQVIFAENKLQEAKKKWI 66
++ ++ I+ + A P+ L K +R+ + G F K
Sbjct: 25 EIIRENIKKAIRTAGSPE---RLWPHVKSHKSKDMVRMQMEYGITKF----------KTA 71
Query: 67 PLRKEWD----------VQLRFIGSLQSNKVSEIVSLFDVI-ETV-SREKTASLLSLEMI 114
+ + + IG V + D + V LS +
Sbjct: 72 TVAEAEMAAEAGAEKVILAYPLIGPNMERFVKLAKAYPDTVFYGVEDDLAQFEALSGVCV 131
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
+ + LP+ + VN G ++G+ + ++ L + G+ C N
Sbjct: 132 EHNAVLPMLVDVNMGM--NRTGVPIERLEELYRSASSLPGLRLCGMHCYDGNHNNKDAAV 189
Query: 175 YLLSEIARECKLTKLSMGMTRD---FELAIASGA 205
+ K++ + + D ELA+A G
Sbjct: 190 RQAQVDDTDKKVSDIMERLNGDGICCELAVAGGT 223
>gi|323974818|gb|EGB69930.1| alanine racemase domain-containing protein [Escherichia coli
TW10509]
Length = 387
Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S + R PV ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVTAGRVQPVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
Q+SG + + V ++ L++ GL P + +
Sbjct: 163 QESGFAQHSLHEVVAEIQKLPGLHLAGLTHFPCLLWDEAA 202
>gi|309388300|gb|ADO76180.1| alanine racemase [Halanaerobium praevalens DSM 2228]
Length = 377
Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 95 DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ 154
D+I+T + +T L+ K ++ + ++++ +TG + G +P + + L
Sbjct: 101 DLIQTAASRETLFALNKFAAKNNKKIKIHLKCDTGM--GRIGFLPEELFEVYKLALSLDN 158
Query: 155 LNVEGLMCIPPAMGNPKPHFYLLSEIAR-ECKLTKL 189
L +EG+ + F ++AR +C L K+
Sbjct: 159 LKLEGIFSHLARADETEKEFSN-KQLARFDCALNKI 193
>gi|326328911|ref|ZP_08195243.1| putative amino acid aldolase or racemase [Nocardioidaceae bacterium
Broad-1]
gi|325953308|gb|EGD45316.1| putative amino acid aldolase or racemase [Nocardioidaceae bacterium
Broad-1]
Length = 407
Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 93 LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQ 151
+++V + A+ S + + R L V I + G+ ++G + + +
Sbjct: 136 HLHWVDSVEGVEAAAEASALVGVEDRPLAVLI--DLGFPGGRTGCRSVEEAVELARVVDS 193
Query: 152 KYQLNVEGLMCIPPAMGNPK---PHFYLLSEIA 181
+ + G+ +G + +F L E+A
Sbjct: 194 TPGVLLAGVAGYEGGLGTAEAVGDYFDRLKELA 226
>gi|302392182|ref|YP_003828002.1| alanine racemase [Acetohalobium arabaticum DSM 5501]
gi|302204259|gb|ADL12937.1| alanine racemase [Acetohalobium arabaticum DSM 5501]
Length = 375
Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 86/240 (35%), Gaps = 45/240 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLV-AVSKM-------VDSKKIRVALSCGQVIF 53
++ L+ + ++ +LV AV K V R A+ G
Sbjct: 17 NIRFNLKQIRARVSAD-----------TLVMAVVKADAYGHGAVPVA--RAAVEAGADRL 63
Query: 54 AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEM 113
A +E + ++V ++ +G + ++ +++ + +I TVS+ +TA L
Sbjct: 64 AVGLPEEGVQ---LRNAGFEVPIQILGEVLPEQI-PLLAKYGLIPTVSKLETAVELERIN 119
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKP 172
+ ++++V+TG + G+ P++ F L +EGL+ A K
Sbjct: 120 AQLESRQKIHLKVDTGM--GRLGVKPDEVVGFAQKLSSFPHLELEGLLTHFATADEADKE 177
Query: 173 HFYLLSEIARECKLTKLSMGMTRDFELAIASGAT-------------SVRIGSGIFGERP 219
+ + + G+ + + A VR G ++G RP
Sbjct: 178 YTRQQWQKFNYAIECLEAAGI----RIPVKHCANSAAIIDLPEMELDLVRAGIMLYGLRP 233
>gi|268589404|ref|ZP_06123625.1| alanine racemase [Providencia rettgeri DSM 1131]
gi|291315242|gb|EFE55695.1| alanine racemase [Providencia rettgeri DSM 1131]
Length = 409
Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 53/135 (39%), Gaps = 19/135 (14%)
Query: 98 ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQKYQL 155
E + A L+ KQ++ +P+++ +N+ + ++G+ + + QL
Sbjct: 140 ELIGNLAMAQRLNAIAKKQNKVIPIHLALNSAG-MSRNGLDVSSASGLDEAKQIAELSQL 198
Query: 156 NVEGLMCIPPAMGNP--KPHFYLLSEIARE-CKLTKLSMGMTRDFELAIASG-AT----- 206
+ G+M P + + +++ +T L D L +A+ AT
Sbjct: 199 KIVGIMSHYPEEDEAQIRKDLAKFKKESQQVLNVTGLKR---EDITLHVANTYATITVPE 255
Query: 207 ----SVRIGSGIFGE 217
VR+G +G+
Sbjct: 256 SWLDMVRVGGIFYGD 270
>gi|188578044|ref|YP_001914973.1| diaminopimelate decarboxylase [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188522496|gb|ACD60441.1| diaminopimelate decarboxylase [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 398
Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 14/87 (16%)
Query: 87 VSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQ 133
+++ +L D + V L+ R +PV++++N G
Sbjct: 107 LAQAAALPDCTVH-VESLSELERLAAIAAHAGRCVPVFLRMNIAVPGAQSTRLMMGGHPS 165
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGL 160
G+ P+ + L R L +EG
Sbjct: 166 PFGLDPDDLDAAMQLLRASPSLRLEGF 192
>gi|158520074|ref|YP_001527944.1| alanine racemase [Desulfococcus oleovorans Hxd3]
gi|254802360|sp|A8ZRV0|ALR_DESOH RecName: Full=Alanine racemase
gi|158508900|gb|ABW65867.1| alanine racemase [Desulfococcus oleovorans Hxd3]
Length = 390
Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 38/252 (15%), Positives = 76/252 (30%), Gaps = 66/252 (26%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRV-ALSCGQVIFAEN 56
++ + + K + L+A K ++ AL G +
Sbjct: 14 AVAHNVAALKALTRPAC----------RLMAAVKADGYGHGMCEVASVALESGASALGVS 63
Query: 57 KLQEAKKKWIPLRKEWDVQLRFI-------GSLQSNKVSEIVSLFDVIETVSREKTASLL 109
++ EA D++ I G +++ E+V ++I+TV A L
Sbjct: 64 RIDEAL----------DLRNHGITAPILVLGHTPAHRCREMVDQ-NLIQTVCALAEAQAL 112
Query: 110 SLEMIKQSRFLPVYIQVNTG-YEIQKSGIMP------NQTKDFVILCRQKYQLNVEGLMC 162
S + V+++V+TG + + ++P + L EG+
Sbjct: 113 SRAATAIGATVSVHLKVDTGMGRLGINTVVPGRTAPQEAAVKEALAVLDLPGLAAEGVFT 172
Query: 163 IPPAMGNP-----KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT----------- 206
+ F S + +E + +A+ A
Sbjct: 173 HFACADSADKTHANAQFKRFSTLIQELEAAGR--------PVAVRHAANSAALIDMPETH 224
Query: 207 --SVRIGSGIFG 216
VR G I+G
Sbjct: 225 LDMVRAGIAIYG 236
>gi|188586547|ref|YP_001918092.1| alanine racemase domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179351234|gb|ACB85504.1| alanine racemase domain protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 362
Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTK 143
N ++E+ D+ V + LS ++ + V ++++ G + + G+ ++
Sbjct: 100 NLLAELARRADIKVAVDSYQNCENLSRIAVEHGVTIGVLVEMDIG--LGRCGVKSFDEGI 157
Query: 144 DFVILCRQKYQLNVEGLMCI-PPAMGNPKPH 173
+ V ++ L G+M P +
Sbjct: 158 NLVQEIQKLDNLEFRGVMGYEGPFRDKTQSE 188
>gi|297520581|ref|ZP_06938967.1| putative amino acid racemase [Escherichia coli OP50]
Length = 265
Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 19/141 (13%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQ 154
TV A +S +K R V ++V + + Q+SG + + + V ++
Sbjct: 3 TVFTLDKAREVSAAAVKAGRVQFVLLKVYSDDDFLYPGQESGFVQHSLHEVVAEIKKLPG 62
Query: 155 LNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC--------KLTKLSMGMTRDFEL 199
L++ GL P + + P P+ + L + + +L S L
Sbjct: 63 LHLAGLTHFPCLLWDEAAGKVLPTPNLHTLIQARDQLAKSGIALEQLNAPSATSCTSLPL 122
Query: 200 AIASGATSVRIGSGIFGERPC 220
G T G + G P
Sbjct: 123 LAQYGVTHAEPGHALTGTIPA 143
>gi|157372239|ref|YP_001480228.1| alanine racemase domain-containing protein [Serratia proteamaculans
568]
gi|157324003|gb|ABV43100.1| alanine racemase domain protein [Serratia proteamaculans 568]
Length = 388
Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 22/164 (13%)
Query: 79 IGSL-QS--NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE---- 131
IG L Q+ N + E ++ + TV + A +S ++Q+ + ++V +
Sbjct: 102 IGHLVQTPVNMIDEAIAQRPEVITVYSVEKARQISTAALRQNHRQALLLKVQDKGDVVYP 161
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL----LSEIARECKLT 187
Q++G + + D + + + + G+ P + N + L+ +AR L
Sbjct: 162 GQEAGFLLAELPDVINQISRMAGVEIIGVTHFPCMLFNEQRQTTEATPNLATLARAKNLL 221
Query: 188 K-----------LSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ S A+G T G + G +P
Sbjct: 222 EQQGIEVRQMNAASATCIETLPKLAAAGVTHTEPGHALTGTQPA 265
>gi|148265867|ref|YP_001232573.1| alanine racemase [Geobacter uraniireducens Rf4]
gi|146399367|gb|ABQ28000.1| alanine racemase [Geobacter uraniireducens Rf4]
Length = 384
Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 21/159 (13%)
Query: 30 LVAVSK----MVDSKKI-RVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQS 84
L+AV K I R + G F + + + D + +G +
Sbjct: 40 LLAVVKADAYGHGFMDISRELEALGVTAFG---VAFLAEGIQLRKSGIDRPILLLGGIYP 96
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
+ + V F++ V A +L K R ++++V+TG + + GI +
Sbjct: 97 GQEKKCVG-FNISTAVFSLDQARVLDDVARKLYRKAKIHLKVDTG--MGRLGIRYEEAPA 153
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
F ++ L +EG+ HF E+ E
Sbjct: 154 FFRELKKLKNLELEGIFS----------HFASADELDDE 182
>gi|21674734|ref|NP_662799.1| alanine racemase [Chlorobium tepidum TLS]
gi|25452782|sp|Q8KB67|ALR_CHLTE RecName: Full=Alanine racemase
gi|21647945|gb|AAM73141.1| alanine racemase [Chlorobium tepidum TLS]
Length = 383
Score = 45.4 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 17/116 (14%)
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
R L V ++V+TG + G+ P + + + L L + G+ + KP +
Sbjct: 136 GRRLQVQLKVDTGM--GRLGVTPEEAAELLELIEACPNLELTGIYT--HFAESDKPEGFT 191
Query: 177 LSEIARECKLT---KLSMGMTRDFELAIASGA---------TSVRIGSGIFGERPC 220
++ R +T + G T + A SGA VR G ++G P
Sbjct: 192 ARQLERFLHVTGAYERRTGKTVT-KHAANSGAIISMPDARLDMVRPGILLYGCHPV 246
>gi|297625319|ref|YP_003687082.1| alanine racemase [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
gi|296921084|emb|CBL55625.1| Alanine racemase [Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 382
Score = 45.0 bits (106), Expect = 0.006, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 50/141 (35%), Gaps = 20/141 (14%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
TV E++A + + + V++ ++TG + G P + LN++
Sbjct: 101 TVVDEQSADEAAEAAKVVGKPVNVHLALDTGMR--RIGAEPEHAVALARHIDE-DALNLQ 157
Query: 159 GLMCIPPAMGNPK------PHFYLLSEIARECKLTKLSMGM-TRDFELAIAS-------- 203
G+ P + ++ + + + + G+ A AS
Sbjct: 158 GIFTHMPVSDTTQGYDFTVEELARFAKAVDDVQADRATRGLPAVPLVHAAASAGVLGHDL 217
Query: 204 -GATSVRIGSGIFGERP-CQT 222
G T VR G I+G P QT
Sbjct: 218 SGLTMVRPGIAIYGAYPDAQT 238
>gi|284172920|ref|YP_003406301.1| alanine racemase [Haloterrigena turkmenica DSM 5511]
gi|284017680|gb|ADB63628.1| alanine racemase domain protein [Haloterrigena turkmenica DSM 5511]
Length = 371
Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 11/118 (9%)
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QT 142
S KV ++ + TV T LL V ++V+ G + ++G+ P +
Sbjct: 105 SQKVEKLAT------TVDSAATIDLLQDAAQAHEITADVILEVDVG--LHRTGVAPGPEA 156
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELA 200
+ L+ +G++ + E+ E +L + D E A
Sbjct: 157 VALAERIDEAANLSFDGILAYESHVKAEAETESEFDELCWE--AMELGEDVVDDIEAA 212
>gi|51894072|ref|YP_076763.1| alanine racemase [Symbiobacterium thermophilum IAM 14863]
gi|81826014|sp|Q67K79|ALR_SYMTH RecName: Full=Alanine racemase
gi|51857761|dbj|BAD41919.1| alanine racemase [Symbiobacterium thermophilum IAM 14863]
Length = 377
Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 70/242 (28%), Gaps = 51/242 (21%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSK-------MVDSKKIRVALSCGQVIFAENKLQ 59
L + I KR + L+AV K V A+ G
Sbjct: 15 LNAVRANI----RALKRISKAPRLMAVVKANGYGHGAVPVAT--AAIEAGADWLG----- 63
Query: 60 EAKKKWIPLRKEWDVQLRFI-------GSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
+ + ++ I G + + +++ + E L+ E
Sbjct: 64 -----VASVEEGVTLRRHGISAPILVLGYVSPGQAEAVLTEGLRVALFDGE-LGQALNRE 117
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-K 171
+ R+ V+++V+TG + G+ P + + + VEG+ P
Sbjct: 118 GRRLGRWARVHLKVDTGM--GRIGLQPAEVGRLGRELARLDHVEVEGVFTHLATADEPGN 175
Query: 172 PHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT-------------SVRIGSGIFGER 218
P+ L E + G+ AI A VR G + G
Sbjct: 176 PYTRLQLERYEAALAELAAAGVRP----AIRHAANSAGLMLHPEAHYDMVRSGIAVVGLP 231
Query: 219 PC 220
P
Sbjct: 232 PA 233
>gi|323966191|gb|EGB61627.1| alanine racemase domain-containing protein [Escherichia coli M863]
gi|327251010|gb|EGE62703.1| alanine racemase, N-terminal domain protein [Escherichia coli
STEC_7v]
Length = 387
Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S + R PV ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVTAGRVQPVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
Q+SG + + V ++ L++ GL P + +
Sbjct: 163 QESGFAQHSLHEVVAEIQKLPGLHLAGLTHFPCLLWDEAA 202
>gi|297569634|ref|YP_003690978.1| alanine racemase [Desulfurivibrio alkaliphilus AHT2]
gi|296925549|gb|ADH86359.1| alanine racemase [Desulfurivibrio alkaliphilus AHT2]
Length = 380
Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP 165
LS + R + V+++++ G + G+ P + L + G+M P
Sbjct: 111 LEALSRLAADRGRQVGVHLKLDAGM--GRFGVAPADLTRLAAIITGLPGLRLAGMMSHFP 168
Query: 166 AMGNPKPHFYLLSE 179
P +
Sbjct: 169 LADVPGAETRCREQ 182
>gi|310828623|ref|YP_003960980.1| alanine racemase domain protein [Eubacterium limosum KIST612]
gi|308740357|gb|ADO38017.1| alanine racemase domain protein [Eubacterium limosum KIST612]
Length = 353
Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 27/191 (14%), Positives = 62/191 (32%), Gaps = 26/191 (13%)
Query: 40 KKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIET 99
+ L+ G ++++Q +W +++ + ++ L+ +
Sbjct: 42 EIAETLLAGGVTALGDSRVQNLVTLADLDCPKWLIRMPMLSEVEETV------LYATLSL 95
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ--TKDFVILCRQKYQLNV 157
S KT L + R V + V+ G + G + D + + +++
Sbjct: 96 NSELKTVQALDTAAARHHRKHEVLVMVDLG--DLREGYFSEESFCADMAEMLK-LKNIDI 152
Query: 158 EGL-------MCIPPAMGNPK--PHFYLLSEIARECKLTKLSMGMTRDFELAIASGA--- 205
G+ I P + + F L + S G + + + + G
Sbjct: 153 RGIGANLSCTGAIVPTVETYERFDDFQTLLKKRFGLDCAITSGGASSTYFM-VEDGTIPS 211
Query: 206 --TSVRIGSGI 214
++RIG I
Sbjct: 212 CINNLRIGELI 222
>gi|317401523|gb|EFV82153.1| diaminopimelate decarboxylase [Achromobacter xylosoxidans C54]
Length = 430
Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V E LS + + V ++VN + K GI D
Sbjct: 137 VESEAELQRLSDVAQEAGQRARVSLRVNPDVDAQTHPYISTGLKENKFGIPIGAALDAYR 196
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
R L + GL C I + + P+F L ++
Sbjct: 197 SARLLPGLEITGLDCHIGSQLTDISPYFDALEKLLD 232
>gi|312962137|ref|ZP_07776629.1| hypothetical protein PFWH6_4055 [Pseudomonas fluorescens WH6]
gi|311283474|gb|EFQ62063.1| hypothetical protein PFWH6_4055 [Pseudomonas fluorescens WH6]
Length = 35
Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIR 43
+I + R V L+ VSK D +R
Sbjct: 2 RILQACRRVGRDPCGVRLLPVSKTFDEAHLR 32
>gi|254496840|ref|ZP_05109691.1| metal-activated pyridoxal enzyme [Legionella drancourtii LLAP12]
gi|254353967|gb|EET12651.1| metal-activated pyridoxal enzyme [Legionella drancourtii LLAP12]
Length = 375
Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 57/148 (38%), Gaps = 25/148 (16%)
Query: 88 SEIVSLFDVIET-------VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
++I L IET V E+ L+ + + V + V++G I ++G+ P
Sbjct: 96 NKITRLMACIETAPATLVVVDNEENILALNHAGESCQKMIHVLVDVDSG--IGRTGVKPE 153
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMG-----NPKPH-----FYLLSEI-----ARECK 185
+F + L + G+ C + N + + SE+ A+
Sbjct: 154 HALNFAMKISALPWLKLMGIQCYAGNLQHIASFNERRQKSLSTMQMASELVSCFKAQGLN 213
Query: 186 LTKLSMGMTRDFELAIAS-GATSVRIGS 212
L+ T +++ I + G T ++ GS
Sbjct: 214 CPILTGTGTGTYDIDIEATGVTEIQPGS 241
>gi|54309937|ref|YP_130957.1| hypothetical protein PBPRA2783 [Photobacterium profundum SS9]
gi|46914376|emb|CAG21155.1| hypothetical protein PBPRA2783 [Photobacterium profundum SS9]
Length = 393
Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 32/180 (17%), Positives = 53/180 (29%), Gaps = 23/180 (12%)
Query: 64 KWIPLRKEWDVQLRFIGSL-Q--SNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRF 119
K +++ IG L Q S V+ IV + TV A +S + +R
Sbjct: 88 KEARQLAGAGIKIAHIGHLVQPPSGMVTSIVENIQPEVITVYSLDKAREISAAAVNANRT 147
Query: 120 LPVYIQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-------PAMG 168
+ ++ + Q+SG + + + + GL P M
Sbjct: 148 QGILLKFYRVDDHMYVNQESGFPFELLEQVLAAITALPNIKLVGLTHFPCFLYNTKTNMT 207
Query: 169 NPKPHFYLLSEIARECK--------LTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
P + L A + K L S + G T G + G P
Sbjct: 208 EPTVNLITLRLAADKAKSLGYAIEQLNGPSSTSCETLPMLAECGGTHGEPGHALTGTTPA 267
>gi|323174009|gb|EFZ59637.1| alanine racemase, N-terminal domain protein [Escherichia coli
LT-68]
Length = 387
Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 22/163 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKVGRVQFVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLIQARDQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+L S L G T G + G P
Sbjct: 223 KSGIALEQLNAPSATSCTSLPLLAEYGVTHAEPGHALTGTIPA 265
>gi|257092050|ref|YP_003165691.1| diaminopimelate decarboxylase [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257044574|gb|ACV33762.1| diaminopimelate decarboxylase [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 414
Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 13/94 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V LS + + P+ ++VN + K G+ +
Sbjct: 124 VESAPELDRLSAVAGRLGKTAPISLRVNPDVDAKTHPYISTGLKENKFGVAYEEALALYR 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEI 180
L + G+ C I + +P P L +I
Sbjct: 184 HAASLPNLTISGIDCHIGSQLLDPAPFAAALDKI 217
>gi|220903457|ref|YP_002478769.1| alanine racemase [Desulfovibrio desulfuricans subsp. desulfuricans
str. ATCC 27774]
gi|259710065|sp|B8J2K3|ALR_DESDA RecName: Full=Alanine racemase
gi|219867756|gb|ACL48091.1| alanine racemase [Desulfovibrio desulfuricans subsp. desulfuricans
str. ATCC 27774]
Length = 371
Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 18/118 (15%)
Query: 95 DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ 154
+ +T+ ++ A LS + V+++V+TG + G+ P + F
Sbjct: 100 HITQTIFSKEQADALSAAASNLGITVKVHVKVDTGM--TRIGVRPEEAAAFCSYVAGLEN 157
Query: 155 LNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIAS-GATSVRIG 211
+++EG+ A + H Y L + F AIA+ A+ +R+G
Sbjct: 158 VHLEGMFT-HFASSDSADHAYCLEQF--------------GRFTAAIAAVEASGIRLG 200
>gi|256019199|ref|ZP_05433064.1| putative amino acid racemase [Shigella sp. D9]
gi|332280303|ref|ZP_08392716.1| conserved hypothetical protein [Shigella sp. D9]
gi|332102655|gb|EGJ06001.1| conserved hypothetical protein [Shigella sp. D9]
Length = 250
Score = 45.0 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 14/119 (11%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRIQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQARDQL 221
>gi|84622901|ref|YP_450273.1| diaminopimelate decarboxylase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84366841|dbj|BAE67999.1| diaminopimelate decarboxylase [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 398
Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 25/130 (19%)
Query: 78 FIGSLQSN-KVSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFLPVYIQVNT------- 128
F G + N ++++ +L D + V L+ R +PV++++N
Sbjct: 97 FGGPGKLNTELAQAAALPDCTVH-VESLSELERLAAIAAHAGRCVPVFLRMNIAVPGAQS 155
Query: 129 -----GYEIQKSGIMPNQTKDFVILCRQKYQLNVEG----LMCIPPAMGNPKPHFYLLSE 179
G G+ P+ + L + L +EG LM + + L
Sbjct: 156 TRLTMGGHPSPFGLDPDDLDAAMQLLQASPSLRLEGFHFHLMS------HQRDAAAQLHL 209
Query: 180 IARECKLTKL 189
IA + +L
Sbjct: 210 IAAYLRTVQL 219
>gi|296132181|ref|YP_003639428.1| alanine racemase [Thermincola sp. JR]
gi|296030759|gb|ADG81527.1| alanine racemase [Thermincola potens JR]
Length = 391
Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 39/234 (16%), Positives = 78/234 (33%), Gaps = 38/234 (16%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKM-------VDSKKIRVALSCGQVIFA 54
++ + L+ + +I ++AV K V ++ AL G
Sbjct: 32 AIAHNLREIR-RITQ---------PQARIMAVVKANAYGHGAVPVSQV--ALQNGVSYLG 79
Query: 55 ENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMI 114
+ + R D + +G + E V +V +T+ + A +S
Sbjct: 80 ---VAMLDEALELRRAGIDAPILILGYTPKEQAEEAVRH-NVTQTIYTLEMARFVSEVGE 135
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH 173
K + V+I+++TG + G +P +T + + L+VEG+
Sbjct: 136 KLRQRAKVHIKIDTGM--TRLGFLPGAETVEKIKEIAALPGLSVEGIFTHFAVSDIRDKA 193
Query: 174 F--YLLSEIARECKLTKLSMGMTRDFELAIASGA---------TSVRIGSGIFG 216
F C + + + A +GA VR+G ++G
Sbjct: 194 FTRQQFKLFTDMCAVLEREGVKIP-IKHAANTGAIIDMPETHLDMVRLGISLYG 246
>gi|119358056|ref|YP_912700.1| alanine racemase [Chlorobium phaeobacteroides DSM 266]
gi|119355405|gb|ABL66276.1| alanine racemase [Chlorobium phaeobacteroides DSM 266]
Length = 376
Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 75/232 (32%), Gaps = 28/232 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVALSC-GQVIFAENK 57
L + ++ KQ + V ++ + K + +K+ L G F
Sbjct: 20 LKHNIREIKQ-----CVGTG-----VRIMGIVKANAYGHNMQKVAETLEAEGISDFGVAN 69
Query: 58 LQEAKK-KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + K K+ L F + + D+ T+ S K
Sbjct: 70 IHEAIELKTGGALKKPANILSFSSPIIQQIEYYLHHQIDM--TLCDANIMKAASAIAEKH 127
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
++ + V+++V+TG + G+ P Q + + ++ L ++G+ N
Sbjct: 128 NKKIGVHLKVDTGM--GRLGLPPLQALELLRETERQPGLELKGVYTHFAESANDDFTRRQ 185
Query: 177 LSEIARECKLTKLSMG--------MTRDFELAIASGATSVRIGSGIFGERPC 220
E + + G + VR G ++G +P
Sbjct: 186 FKEFKTMTDAYETASGKTLCKHAASSGTLLNNPEMRLDMVRPGILLYGYKPY 237
>gi|156362165|ref|XP_001625651.1| predicted protein [Nematostella vectensis]
gi|156212494|gb|EDO33551.1| predicted protein [Nematostella vectensis]
Length = 289
Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG + +++ + V V + +S + V I+VN G E + G+
Sbjct: 37 IGESKLLRLASLAKQAKVSVCVDDAQNVEEMSKVASIMGATIDVIIEVNVGQE--RCGVE 94
Query: 139 PNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
P + LN +G+ + +
Sbjct: 95 PGEQVVQLAKHILALPNLNFKGIQTYQGWNQHVRK 129
>gi|239832987|ref|ZP_04681316.1| diaminopimelate decarboxylase [Ochrobactrum intermedium LMG 3301]
gi|239825254|gb|EEQ96822.1| diaminopimelate decarboxylase [Ochrobactrum intermedium LMG 3301]
Length = 421
Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E +LS ++ + V +++N TG K GI + ++
Sbjct: 124 VESEPELEILSARAVRAGKVASVSLRINPDVDAKTHAKISTGKSENKFGIPRVKAREAYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIARECKLT 187
L+V G+ M I + + +P F L++++ +E +
Sbjct: 184 RAASLPGLDVVGIDMHIGSQIIDLEPFDDAFALMAQLVKELQAD 227
>gi|312213094|emb|CBX93176.1| similar to alanine racemase domain protein [Leptosphaeria maculans]
Length = 369
Score = 45.0 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 54/153 (35%), Gaps = 21/153 (13%)
Query: 84 SNKVSEIVSLF----DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
KV +V L+ ++ V K A ++ M + + ++ + ++G+ P
Sbjct: 96 RTKVRRLVELWKDYRNLKIVVDSAKGARAINDAMRESGMQGSIMTLIDLDVGLHRTGVQP 155
Query: 140 NQ-TKDFVILCRQKYQLNVEGLMCIPPAM----GNPKPHFYLLSEI-----------ARE 183
+ + + L + G+ + G+ + L + E
Sbjct: 156 GEPALELARVVAGCDHLTIIGVQGYEGHLQHVHGDEERKRSCLESMKILTQTAEALRQEE 215
Query: 184 CKLTKLSMGMTRDFELAIAS-GATSVRIGSGIF 215
++ ++ G T E + G T V+ GS +F
Sbjct: 216 HQIDVVTTGGTGTAEFCVTVPGITEVQPGSFVF 248
>gi|118444569|ref|YP_878187.1| amino acid racemase [Clostridium novyi NT]
gi|118135025|gb|ABK62069.1| amino acid racemase [Clostridium novyi NT]
Length = 368
Score = 44.6 bits (105), Expect = 0.008, Method: Composition-based stats.
Identities = 41/206 (19%), Positives = 77/206 (37%), Gaps = 34/206 (16%)
Query: 28 VSLVAVSKMV--DSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDV----QLRFIGS 81
V ++ V+K+ + + + G + AE+++ K K L+ E + L IG
Sbjct: 29 VEVMGVNKVFNGSVETAKAIVDGGIKVVAESRIDNLK-KIQNLKCEKALLRSPALSEIG- 86
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN- 140
++V D I S + LS E + Q++ V + ++ G + GI
Sbjct: 87 -------DVVKYAD-ISLNSEIEIIRELSKEAVIQNKIHKVLLMIDFGDI--REGIWFEN 136
Query: 141 --QTKDFVILCRQKYQLNVEGLMCI-------PPAMGNPKPHFYLLSEIAREC--KLTKL 189
+ ++ + + + + GL P + N K L E+ ++ K L
Sbjct: 137 KGEIEEVLNKVKLLPNIEIYGLGTNFNCYGTALPTVKNGKMFVELARELEKKLNIKFKYL 196
Query: 190 SMGMTRDFELAIA----SGATSVRIG 211
S G + L G +RIG
Sbjct: 197 SGGNCTSYHLIDKGIFPKGINHLRIG 222
>gi|170766761|ref|ZP_02901214.1| alanine racemase family [Escherichia albertii TW07627]
gi|170124199|gb|EDS93130.1| alanine racemase family [Escherichia albertii TW07627]
Length = 387
Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 14/119 (11%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++VS+ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVSDAVEQGTDVITVFTLDKAREVSAAAVKAGRVQSVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIQKLPGLHLAGLTHFPCLLWDETRGKVLPTPNLHTLVQAREQL 221
>gi|156740573|ref|YP_001430702.1| alanine racemase domain-containing protein [Roseiflexus
castenholzii DSM 13941]
gi|156231901|gb|ABU56684.1| alanine racemase domain protein [Roseiflexus castenholzii DSM
13941]
Length = 349
Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 12/141 (8%)
Query: 86 KVSEIVSLFDVIE---TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQ 141
K+ +V+L ++ T + L M LPV ++ +TG + G+ P +
Sbjct: 90 KLERLVALARRVQVSVTADSPDVVTGLGAAMSGAGLELPVLVECDTGM--GRCGVQTPAE 147
Query: 142 TKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIARECKLTKLSMGMTRDFE 198
+ + L GLM P + + LL E R + ++S G T
Sbjct: 148 AAELAFQIARTAGLRFGGLMTYPSSPAIGPFMREAVRLLRE--RGLPVERVSGGGTAGMW 205
Query: 199 LAIAS-GATSVRIGSGIFGER 218
A T R G ++G+R
Sbjct: 206 HAHEHPEVTEYRAGMYVYGDR 226
>gi|74316244|ref|YP_313984.1| diaminopimelate decarboxylase [Thiobacillus denitrificans ATCC
25259]
gi|74055739|gb|AAZ96179.1| diaminopimelate decarboxylase [Thiobacillus denitrificans ATCC
25259]
Length = 414
Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 16/104 (15%), Positives = 28/104 (26%), Gaps = 20/104 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L+ + + PV +VN + K G+ +
Sbjct: 124 VESTSELHRLNRVAGELGKVAPVSFRVNPDVDPKTHPYISTGLKENKFGVPIAEAPALYR 183
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARE 183
+ V G L+ + P F L+ +A E
Sbjct: 184 TAAALPHIRVTGIDCHIGSQLLDLSPLADAADRVFALVDALAAE 227
>gi|289450381|ref|YP_003475805.1| alanine racemase [Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289184928|gb|ADC91353.1| alanine racemase [Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 386
Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 46/232 (19%), Positives = 83/232 (35%), Gaps = 34/232 (14%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKK-IRVALSCGQVIFAEN 56
+L N + + I V ++ V K + R + CG A
Sbjct: 24 NLANNIANIRAAIA----------PQVKIMGVIKGDAYGHGAVMTARTMIDCGVEYLAVA 73
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + K + L G ++ +IV+ D+ +TV +SL IK
Sbjct: 74 TVDEALELRGNDIKTPILVL---GYTDVSRAMDIVAN-DLTQTVYELTLPEAMSLAAIKL 129
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
++ +++++ TG E + GI ++ +F ++VEG+ K F
Sbjct: 130 NKTAKIHLKIETGME--RIGIPADEHLIEFAKKLYALPNVDVEGIFTHFATADEAKSDFV 187
Query: 176 LLSEIARECKLTK--LSMGMTRDFEL-----AI----ASGATSVRIGSGIFG 216
L + R K T+ + G + AI VR G ++G
Sbjct: 188 KL-QFERFKKATEVLATAGYYPRYRHCCNSAAILRYPEYHLDMVRAGGLVYG 238
>gi|85858827|ref|YP_461029.1| alanine racemase [Syntrophus aciditrophicus SB]
gi|85721918|gb|ABC76861.1| alanine racemase [Syntrophus aciditrophicus SB]
Length = 661
Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 27/141 (19%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
++S AS + + PV+I+++TG + G++ + + + VE
Sbjct: 107 SLSDLLFASEFQRHLARAGVTSPVHIEIDTGM--GRGGMLCEEAPAIIRNIFGLPNIAVE 164
Query: 159 GLMCIPPA----MGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT-------- 206
G+ + + + + L E+ MG++ + I A
Sbjct: 165 GIFTHLASSEVCVDYNEQQWSLFRELTDRLNA----MGIS----IPIKHMANSGAILNYP 216
Query: 207 -----SVRIGSGIFGERPCQT 222
VR G +G P +
Sbjct: 217 RFHLDMVRPGLMSYGIHPAPS 237
>gi|290962430|ref|YP_003493612.1| amino acid racemase [Streptomyces scabiei 87.22]
gi|260651956|emb|CBG75086.1| putative amino acid racemase [Streptomyces scabiei 87.22]
Length = 368
Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 16/131 (12%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
V L+ M ++ L V I+V+ G ++SG P D L +K L G
Sbjct: 117 VDNVAAIEALADAMGEEPDRLQVVIEVDCG--ARRSGAPPEAAGDLA-LAARKRGLMPVG 173
Query: 160 LMCIPPAMGNPKPHF--------YLLSEIARECK-----LTKLSMGMTRDFELAIASGAT 206
+ P G + L+ R + +S G T FE + + T
Sbjct: 174 VFTYPGHGGADRDARRRAAQDQEAALTAAVRSLEGVGVTAEVVSAGSTPTFEFSTSGVIT 233
Query: 207 SVRIGSGIFGE 217
+R G IFG+
Sbjct: 234 EIRPGEYIFGD 244
>gi|260913224|ref|ZP_05919706.1| diaminopimelate decarboxylase [Pasteurella dagmatis ATCC 43325]
gi|260632811|gb|EEX50980.1| diaminopimelate decarboxylase [Pasteurella dagmatis ATCC 43325]
Length = 416
Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 39/114 (34%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V ++ + + P+ ++VN + K GI ++ ++
Sbjct: 124 VESVAELHRINQVAGELGKVAPISLRVNPDVDAHTHPYISTGLKENKFGISVDEAREVYR 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L Q + + G+ C + P + L+ ++ + +L L +G
Sbjct: 184 LASQLPHIKITGMDCHIGSQLTELQPFLDATDRLIVLMKQLKEDSIQLKHLDLG 237
>gi|166713024|ref|ZP_02244231.1| diaminopimelate decarboxylase [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 398
Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 14/87 (16%)
Query: 87 VSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQ 133
+++ +L D + V L+ R +PV++++N G
Sbjct: 107 LAQAAALPDCTVH-VESLSELERLAAIAAHAGRCVPVFLRMNIAVPGAQSTRLTMGGHPS 165
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGL 160
G+ P+ + L + L +EG
Sbjct: 166 PFGLDPDDLDAAMQLLQASPSLRLEGF 192
>gi|223042373|ref|ZP_03612422.1| alanine racemase, N- domain family [Staphylococcus capitis SK14]
gi|222444036|gb|EEE50132.1| alanine racemase, N- domain family [Staphylococcus capitis SK14]
Length = 351
Score = 44.6 bits (105), Expect = 0.009, Method: Composition-based stats.
Identities = 29/184 (15%), Positives = 62/184 (33%), Gaps = 30/184 (16%)
Query: 48 CGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS 107
G FAE+++ + + D+ + F + +I TV + +
Sbjct: 49 LGITHFAESRI-------DNIERLRDLNITF------TLLRPTTEFETMISTV-KLSIQT 94
Query: 108 LLS--LEMIKQSRFLPVYIQVNTGYE--IQKSGIMPNQTKDFVILCRQKYQLNVEGL--- 160
L ++ ++ + V Q+ + + G++ D++ + + GL
Sbjct: 95 ELDTIKQLNVIAKRMNVKHQIMLMVDWKDGREGVLTYDVLDYIKEIMSMSHIQLVGLAFN 154
Query: 161 -MCIPPAMGNPKPHF---YLLSEIAREC--KLTKLSMGMTRDFELAI--ASGA-TSVRIG 211
MC F +S + +E K +S G + + G +RIG
Sbjct: 155 FMCFKSKAPEENDVFMINKFISAVEKEIGYKFKIISGGNSSMLPQTMYNDLGKINELRIG 214
Query: 212 SGIF 215
+F
Sbjct: 215 EALF 218
>gi|88807916|ref|ZP_01123427.1| alanine racemase [Synechococcus sp. WH 7805]
gi|88787955|gb|EAR19111.1| alanine racemase [Synechococcus sp. WH 7805]
Length = 393
Score = 44.6 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 42/226 (18%), Positives = 78/226 (34%), Gaps = 27/226 (11%)
Query: 15 ENSAILAKRPKDSVSLVAVSK----MVDSKKI-RVALSCGQVIFAENKLQEAKKKWIPLR 69
+N+ L K +L+AV K ++ + R A+ G LQE + R
Sbjct: 37 KNARALKGILKPGCALMAVVKADGYGHGAETVARAAICGGAASLGVATLQEGIE---LRR 93
Query: 70 KEWDVQLRFIGSL-QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
++ + +G+L Q+ + + ++ T+S + A L R V Q+
Sbjct: 94 AGLELPVLVLGNLIQAEDLRACLHW-QLMPTLSSMREALLCQNLASGSGRRFSV--QLKL 150
Query: 129 GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL-----MCIPPAMGNPKPHFYLLSEIARE 183
+ + G +Q L + G+ M G+ + L E
Sbjct: 151 DTGMTRLGCDWQDGSRLTAAIQQLDHLMLRGVYSHLAMADGGPEGDAERITRLQQERFDA 210
Query: 184 CKLTKLSMGMTRDFELAIASGA--------TSVRIGSGIFGERPCQ 221
+ S + LA ++G VR+G ++G P Q
Sbjct: 211 VTRSLRSEALQ--LHLANSAGTLRDPSLHHDQVRVGLALYGHSPSQ 254
>gi|307947153|ref|ZP_07662488.1| alanine racemase domain protein [Roseibium sp. TrichSKD4]
gi|307770817|gb|EFO30043.1| alanine racemase domain protein [Roseibium sp. TrichSKD4]
Length = 355
Score = 44.6 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 11/125 (8%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEG 159
E L+ K + L V ++ +TG ++G+ P + + L G
Sbjct: 112 DNEVVVRALASTFAK-NAPLKVLVECDTG--AGRNGVQSPEDALALALKINAEEGLTFHG 168
Query: 160 LMCIPPA--MGNPKPHFYLLSEIARECKL--TKLSMGMTRDFELA--IASGATSVRIGSG 213
L+ P A + F + +E L +S G + + + S AT R G+
Sbjct: 169 LLTYPKANTEDAVEAFFSKTISLLKEQGLACPVVSHGGSPSLLDSHLVKS-ATEHRAGTY 227
Query: 214 IFGER 218
IF +R
Sbjct: 228 IFNDR 232
>gi|113953241|ref|YP_729636.1| alanine racemase [Synechococcus sp. CC9311]
gi|113880592|gb|ABI45550.1| alanine racemase [Synechococcus sp. CC9311]
Length = 393
Score = 44.6 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 51/230 (22%), Positives = 79/230 (34%), Gaps = 36/230 (15%)
Query: 14 IENSAILAKRPKDS-VSLVAVSK----MVDSKKIRVA-LSCGQVIFAENKLQEAKKKWIP 67
IE +A KR L+AV K ++ + A + G F LQE
Sbjct: 35 IEANARSLKRHLGPHCDLMAVVKADGYGHGAETVAKASVRGGATSFGVATLQEGIDLRNA 94
Query: 68 LRKEWDVQLRFIGSL-QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ + L G L Q + + + ++ T+S + A L R PV ++V
Sbjct: 95 GLDQPVLVL---GHLSQPDDLRACLQW-RLMPTLSSMREALLCQNLADSSGRRFPVQLKV 150
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG----LMCIPPAMGNPKPHFYLLSE--- 179
+TG + G K +Q QL++ G L P L E
Sbjct: 151 DTGM--TRLGCDWKDGKRLAHAIQQLDQLSLSGIYSHLALADGERDGPAAQVTKLQEDRF 208
Query: 180 --IARECKLTKLSMGMTRDFELAIASGA--------TSVRIGSGIFGERP 219
I RE + L LA ++G VR+G ++G P
Sbjct: 209 ESITRELRSPTLKR------HLANSAGTLRDTGLHHDLVRVGLALYGHCP 252
>gi|325498922|gb|EGC96781.1| amino acid racemase [Escherichia fergusonii ECD227]
Length = 387
Score = 44.6 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++VS+ V + TV A +S + R PV ++V + +
Sbjct: 103 GHLVQIPCHQVSDAVEQGTDVITVFTLDKAREVSAAAVTAGRVQPVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
Q+SG + + V ++ L++ GL P + +
Sbjct: 163 QESGFAQHSLHEVVAEIQKLPGLHLAGLTHFPCLLWDEAA 202
>gi|309389791|gb|ADO77671.1| alanine racemase domain protein [Halanaerobium praevalens DSM 2228]
Length = 360
Score = 44.6 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 47/206 (22%), Positives = 91/206 (44%), Gaps = 29/206 (14%)
Query: 28 VSLVAVSKMVDSKK--IRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN 85
++L V+K + + I ++ G A+++L + KK L + ++ L I +
Sbjct: 29 INLTVVTKGIAGDQKIIETFINSGVKSIADSRL-DNIKKIRKLNYQGEIILLRI--PKKT 85
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
+++E V D V+ ++ LL+ K+++ + V + V+ G ++ G+MP DF
Sbjct: 86 EINEAVDYIDY-SLVTELESCKLLAKAANKKNKKIGVIVMVDIG--DRREGVMPQDLTDF 142
Query: 146 VILCRQKYQLNVEGL-------MCIPPAMGNPKPHFYLLSEIAREC--KLTKLSMGMTRD 196
+ + L +EG+ C+ P N K L +++ +E K+ +LS G T
Sbjct: 143 IQKIIKLPGLYLEGIGTNLGCYGCVIPDQANTKRIIALKNKVEKELAIKINRLSGGNTAT 202
Query: 197 --------FELAIASGATSVRIGSGI 214
E I ++RIG I
Sbjct: 203 TNLFGTGLLEAEI----NNLRIGEAI 224
>gi|223936213|ref|ZP_03628126.1| alanine racemase domain protein [bacterium Ellin514]
gi|223895075|gb|EEF61523.1| alanine racemase domain protein [bacterium Ellin514]
Length = 368
Score = 44.6 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ--KSG 136
+G ++ ++ ++ I V E+ A +LS + + ++V+ G KSG
Sbjct: 97 VGHVKIARLIQLAKRAAPIVAVDSEENARMLSAAASAANVEIRALVEVDIGLNRCGVKSG 156
Query: 137 IMPNQTKDFVILCRQKYQLNVEGL 160
L + EGL
Sbjct: 157 AP---ALALTRLIASLPGIKFEGL 177
>gi|311745853|ref|ZP_07719638.1| putative amino acid racemase [Algoriphagus sp. PR1]
gi|126576056|gb|EAZ80334.1| putative amino acid racemase [Algoriphagus sp. PR1]
Length = 357
Score = 44.6 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 38/192 (19%), Positives = 73/192 (38%), Gaps = 26/192 (13%)
Query: 42 IRVALSCGQVIFAENKLQEA--KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIET 99
++ ++ G ++++ KK + VQ +I + V ++V DV +
Sbjct: 43 LQELINLGVREIHDSRISNLAMVKKI-----KPSVQTVYIKPVSKRNVGKMVEFADV--S 95
Query: 100 VSREK-TASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
++ E T +S E + Q + + I V TG + G+M Q +F Q + V
Sbjct: 96 LNSELNTIHWISEEAVLQKKKHKIIIMVETG--DLREGVMGEQLVEFYSQIFQLPNIEVI 153
Query: 159 GLMCIPPAMGNPKPHFYLLSEIARECKLTKL---------SMGMTRDFELAIAS----GA 205
GL + P L +++ ++ +L S G + L + G
Sbjct: 154 GLGTNLNCLNGVMPSTDKLIQLSLYKQIIELKFNKKIPWVSAGTSVTIPLMLTHQLPLGI 213
Query: 206 TSVRIGSGI-FG 216
R+G + FG
Sbjct: 214 NHFRVGETLYFG 225
>gi|157273511|gb|ABV27410.1| alanine racemase [Candidatus Chloracidobacterium thermophilum]
Length = 398
Score = 44.6 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM 167
L + R + ++++++TG I + G+ P+Q + + L ++GLM +
Sbjct: 113 ALEQAASRAGRSVAIHLEIDTG--IGRLGLSPDQLTAVLERLKSCSHLRLDGLMTHFASA 170
Query: 168 GNPKPHFYLLSEIAREC 184
P+ + +I R
Sbjct: 171 DLPEYADFTRDQIRRHA 187
>gi|254427501|ref|ZP_05041208.1| diaminopimelate decarboxylase [Alcanivorax sp. DG881]
gi|196193670|gb|EDX88629.1| diaminopimelate decarboxylase [Alcanivorax sp. DG881]
Length = 413
Score = 44.6 bits (105), Expect = 0.010, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 23/126 (18%)
Query: 90 IVSLFDVIET--VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKS 135
+L I V LL+L + R P+ I+VN + K
Sbjct: 112 AAALKANIHCFNVESAAELELLNLVAGELDREAPIAIRVNPDVDAQTHPYISTGLKDNKF 171
Query: 136 GIMPNQTKDFVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKL 186
G+ + + + + G+ C + P + LL+++ ++
Sbjct: 172 GVDITKAPALYQRAAELPHIRILGIDCHIGSQLTKLAPFEDALERVLKLLAQLQEHGIEI 231
Query: 187 TKLSMG 192
L +G
Sbjct: 232 HHLDLG 237
>gi|255323995|ref|ZP_05365121.1| alanine racemase [Corynebacterium tuberculostearicum SK141]
gi|255299175|gb|EET78466.1| alanine racemase [Corynebacterium tuberculostearicum SK141]
Length = 368
Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 37/201 (18%), Positives = 72/201 (35%), Gaps = 37/201 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVALS-CGQVIFAEN 56
++ + +++ K+K+ V L+ V K + K+ ++ G F
Sbjct: 13 AIAHNVRLIKEKV----------GPEVKLMCVVKADAYGHGAAKVVPVMARAGADCFGVA 62
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKV--SEIVSLFDVIETVSREKTASLLSLEMI 114
L+EA V + Q++++ + + +V V+ + A L +
Sbjct: 63 TLREAVNLRRAGVDAPIVAWIW----QTDEILEEALANGIEV--AVNSLEQAHKL----V 112
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI--------PPA 166
K VY++V TG +SG+ + + R + V GLM P
Sbjct: 113 KADFPAEVYVKVETGM--HRSGVDEGDWAETFKVLRDAPHIKVLGLMSHFACADEPDNPH 170
Query: 167 MGNPKPHFYLLSEIARECKLT 187
+ F ++ARE L
Sbjct: 171 NDAQEEAFRTALQLAREIGLE 191
>gi|296114141|ref|ZP_06832796.1| alanine racemase [Gluconacetobacter hansenii ATCC 23769]
gi|295979217|gb|EFG85940.1| alanine racemase [Gluconacetobacter hansenii ATCC 23769]
Length = 355
Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 43/135 (31%), Gaps = 16/135 (11%)
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVIL 148
+ VIE R L V+++ +TG + G+ P+
Sbjct: 108 VADNLPVIEGYDRVT--------AGADIPALRVFVECDTGG--NRCGVQTPHDALTLAQR 157
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPH--FYLLSEIARECKLTK--LSMGMTRDFELAIASG 204
L GLM P + + + +T +++G T D A
Sbjct: 158 IMAAPNLCFAGLMTYPASGKQAQADTWLEQARGVFDTAGVTIPAITVGGTPDLWTAGDIR 217
Query: 205 A-TSVRIGSGIFGER 218
T R G+ I+ +R
Sbjct: 218 NMTEYRPGTYIYMDR 232
>gi|226357231|ref|YP_002786971.1| diaminopimelate decarboxylase [Deinococcus deserti VCD115]
gi|226319221|gb|ACO47217.1| putative diaminopimelate decarboxylase (DAP decarboxylase)
(Meso-2,6-diaminoheptanedioate carboxy-lyase)
[Deinococcus deserti VCD115]
Length = 409
Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 14/117 (11%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQKSGIMPNQ 141
+V+ V L+ + R V ++VN G GI +
Sbjct: 106 AEVLH-VESRSELERLAWTARSRGRVAAVLLRVNLRVGDLPDTPLTMGGRPTPFGIDAAE 164
Query: 142 TKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDF 197
+ Q +L + G + + + H LL+ A + + + G+T D
Sbjct: 165 IPGCLAWLEQHPELQLRGFHFHLLSHQLDARAHLRLLAAYAEQVRAWQSRYGLTTDL 221
>gi|237731612|ref|ZP_04562093.1| alanine racemase [Citrobacter sp. 30_2]
gi|226907151|gb|EEH93069.1| alanine racemase [Citrobacter sp. 30_2]
Length = 408
Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 19/142 (13%)
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF--VIL 148
+ FD E + A LS ++ + + +++ +N+G + ++G+ +
Sbjct: 132 AADFDTEELIGNLDMAKRLSAIAQEKGKTIRIHLALNSGG-MSRNGLEVSTAAGLEEARA 190
Query: 149 CRQKYQLNVEGLMCIPPAMGNP--KPHFYLLS-EIARECKLTKLSMGMTRDFELAIASG- 204
L + G+M P K + + A+ K+T L D L +A+
Sbjct: 191 ISALPGLKIVGIMSHFPEEDAAVVKRDLARFNTQSAQVLKITGLKR---EDVTLHVANTF 247
Query: 205 AT---------SVRIGSGIFGE 217
AT VR+G +G+
Sbjct: 248 ATLTVPESWLDMVRVGGIFYGD 269
>gi|108801722|ref|YP_641919.1| hypothetical protein Mmcs_4759 [Mycobacterium sp. MCS]
gi|119870873|ref|YP_940825.1| hypothetical protein Mkms_4845 [Mycobacterium sp. KMS]
gi|108772141|gb|ABG10863.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119696962|gb|ABL94035.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length = 416
Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 3/79 (3%)
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCR 150
F ++ V + L+S + R L V ++V ++G
Sbjct: 145 PEFRMVCWVDSLRGVELMSAALADAGRPLDVCVEVGMAG--GRTGCRTTADVDAVARAVT 202
Query: 151 QKYQLNVEGLMCIPPAMGN 169
+L + G+ A G
Sbjct: 203 ASPRLRLVGVAGYEAACGQ 221
>gi|320536161|ref|ZP_08036211.1| alanine racemase [Treponema phagedenis F0421]
gi|320146997|gb|EFW38563.1| alanine racemase [Treponema phagedenis F0421]
Length = 379
Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 34/156 (21%)
Query: 91 VSLFDVIETV----------SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
+ + + I ++ E L+ E + V+++++TG + G P
Sbjct: 83 LPILEEIHSIIEYNIHPLVIDSEFI-HALNEEAARMKTVQAVHLKIDTGM--NRIGCKPE 139
Query: 141 QTKDFVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARECKLTKLSMG 192
Q L +EG+ P + K L ++ + G
Sbjct: 140 DAITLAAEIVQLPNLKLEGVCTHFSVADSVSPENIAYTKKQLALFTQTLDALRAK----G 195
Query: 193 MTRDFELAIASGA---------TSVRIGSGIFGERP 219
+ A SGA VR G ++G P
Sbjct: 196 IDPGIVHAANSGAVLQYPEAQFDMVRPGIIVYGYPP 231
>gi|291294605|ref|YP_003506003.1| alanine racemase [Meiothermus ruber DSM 1279]
gi|290469564|gb|ADD26983.1| alanine racemase [Meiothermus ruber DSM 1279]
Length = 365
Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 41/238 (17%), Positives = 81/238 (34%), Gaps = 57/238 (23%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + + + + + ++ V K A G V +E
Sbjct: 12 ALAHNYNLLRSR-----------AGNTQVIGVVK-------ANAYGHGAVEVG----KEL 49
Query: 62 K------------KKWIPLRKEWDV-QLRFIGSLQSNKVSEIVSLFDVIETVSREKTASL 108
+ LRK V ++ +GSL + E+V L D+I ++S ++A
Sbjct: 50 LRLGAWGLAVATTDEARELRKAGIVARILLMGSLHPQQAREVVEL-DLIPSISTLESAEA 108
Query: 109 LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG 168
L+ + + V+++ +TG + G P + + L V+G I
Sbjct: 109 LN----ALGKPVTVHLEFDTGM--GRVGFQPEEAPQVKEHLVRYENLLVQG---IYSHFA 159
Query: 169 NPKP----------HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ + HF + ++ L F G ++VR G G++G
Sbjct: 160 DAEEDVLWTKEQIAHFKQVQQVFGPGYFYHL-CNTAGTFNFG-EYGLSAVRPGIGLYG 215
>gi|124009568|ref|ZP_01694242.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
gi|123984807|gb|EAY24782.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
Length = 303
Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 18/157 (11%)
Query: 73 DVQLRFIGSLQSNKVSEIVSLFDVIETVSREK-TASLLSLEMIKQSRFLPVYIQVNTGYE 131
D+ +I + IV+ DV +++ E T LLS E +Q++ V I + G
Sbjct: 18 DITTVYIKPPAKRSIKSIVTYADV--SLNTEYFTIKLLSEEAQRQNKTHRVVIMLELG-- 73
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMC--------IPPAMGNPK-PHFYLLSEIAR 182
+ G+M + DF Q + V GL +P + + + E+
Sbjct: 74 DLREGVMREEIIDFYEKIFQLPNIKVVGLGTNLNCLHGVMPSEDKLIQLSLYKQIIELKF 133
Query: 183 ECKLTKLSMGMTRDFELAIAS----GATSVRIGSGIF 215
+ K+ +S G T L + G R+G +F
Sbjct: 134 KRKIPFISAGTTVTLPLLLHKQLPDGVNHFRLGEALF 170
>gi|126700435|ref|YP_001089332.1| putative amino acid racemase [Clostridium difficile 630]
gi|115251872|emb|CAJ69707.1| putative amino acid racemase [Clostridium difficile]
Length = 370
Score = 44.3 bits (104), Expect = 0.011, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
++G + N++ + S ++I + A S K + I V+ G + + G+
Sbjct: 85 YMGEVNINRIVTMASKINLICATDNIECAKAYSEAFSKSKIECKLLIIVDCG--LHRFGV 142
Query: 138 MPNQTKDFVILCRQKYQLNVEGL 160
P + + + + + G+
Sbjct: 143 EPEKVVELATEISKLENIKIVGI 165
>gi|157145451|ref|YP_001452770.1| alanine racemase [Citrobacter koseri ATCC BAA-895]
gi|157082656|gb|ABV12334.1| hypothetical protein CKO_01194 [Citrobacter koseri ATCC BAA-895]
Length = 356
Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 13/132 (9%)
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
L I + + K L+ + + L VY++VN+G + G +P + + R
Sbjct: 95 RLTTCIHSNWQLKV-----LQNARLNAPLDVYLKVNSGM--NRLGFLPERVQTVWQQLRA 147
Query: 152 KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI----ASGATS 207
+ LM +P+ +++IA + + ++ A +
Sbjct: 148 LPNVGEMTLMSHFADAEHPEGIDQAMTKIAHATEGLECRRSLSN--SAATLWHPEAHFDW 205
Query: 208 VRIGSGIFGERP 219
VR G ++G P
Sbjct: 206 VRPGIILYGASP 217
>gi|58580977|ref|YP_199993.1| diaminopimelate decarboxylase [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58425571|gb|AAW74608.1| diaminopimelate decarboxylase [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 426
Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 24/116 (20%)
Query: 87 VSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQ 133
+++ +L D + V L+ R +PV++++N G
Sbjct: 135 LAQAAALPDCTVH-VESLSELERLAAIAAHAGRCVPVFLRMNIAVPGAQSTRLTMGGHPS 193
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEG----LMCIPPAMGNPKPHFYLLSEIARECK 185
G+ P+ + L + L +EG LM + + L IA +
Sbjct: 194 PFGLDPDDLDAAMQLLQASPSLRLEGFHFHLMS------HQRDAAAQLHLIAAYLR 243
>gi|255101991|ref|ZP_05330968.1| putative amino acid racemase [Clostridium difficile QCD-63q42]
gi|255307859|ref|ZP_05352030.1| putative amino acid racemase [Clostridium difficile ATCC 43255]
Length = 370
Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
++G + N++ + S ++I + A S K + I V+ G + + G+
Sbjct: 85 YMGEVNINRIVTMASKINLICATDNIECAKAYSEAFSKSKIECKLLIIVDCG--LHRFGV 142
Query: 138 MPNQTKDFVILCRQKYQLNVEGL 160
P + + + + + G+
Sbjct: 143 EPEKVVELATEISKLENIKIVGI 165
>gi|149907666|ref|ZP_01896413.1| Predicted amino acid racemase [Moritella sp. PE36]
gi|149809336|gb|EDM69265.1| Predicted amino acid racemase [Moritella sp. PE36]
Length = 305
Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 15/122 (12%)
Query: 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC---- 162
LSL + + + I V G + G+MPN F+ + ++G+
Sbjct: 52 EQLSLVASQTNIIHGIIIMVELG--DLREGVMPNNLLAFIGNIINLPNIVIKGIGTNLAC 109
Query: 163 ---IPPAMGNPKPHFYLLSEIAR--ECKLTKLSMGMTRDFELAIASGA----TSVRIGSG 213
I P L E+ + +L +S G + A+ A ++RIG
Sbjct: 110 RYGISPDNDKMSQLSALADEVEQAFSIQLDIISGGNSASINWALNHEASSRINNLRIGEA 169
Query: 214 IF 215
IF
Sbjct: 170 IF 171
>gi|306835298|ref|ZP_07468326.1| alanine racemase [Corynebacterium accolens ATCC 49726]
gi|304568818|gb|EFM44355.1| alanine racemase [Corynebacterium accolens ATCC 49726]
Length = 365
Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 80/243 (32%), Gaps = 55/243 (22%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIFAEN 56
++ + +++ K+KI V L+ V K ++++ L G
Sbjct: 10 AIAHNVRLIKEKI----------GPDVKLMCVVKADAYGHGAERVVPVMLEAGADSIGVA 59
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE-TVSREKTASLLSLEMIK 115
L EA + + QS++V E L I+ V+ A L ++
Sbjct: 60 TLTEAVQLRRMGVDSPIAAWIW----QSDQVLEEA-LACGIQIAVNSPAQAQKL----VE 110
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP----- 170
+YI+V TG +SG+ + L R+ + V GLM +P
Sbjct: 111 AEIPAEIYIKVETGM--HRSGVDKADWDEVFALLREAPHITVLGLMSHFACADDPDNAHN 168
Query: 171 ---KPHFYLLSEIARECKLT-----------KLSMGMTRDFELAIASGATSVRIGSGIFG 216
+ F + A L LS + FE VR+G +G
Sbjct: 169 DAQEEEFRRALDAAHAAGLECPVNHLANSPATLSR-PSAHFE--------QVRVGIACYG 219
Query: 217 ERP 219
P
Sbjct: 220 LEP 222
>gi|118444310|ref|YP_877347.1| alanine racemase [Clostridium novyi NT]
gi|166919551|sp|A0PY95|ALR_CLONN RecName: Full=Alanine racemase
gi|118134766|gb|ABK61810.1| alanine racemase [Clostridium novyi NT]
Length = 387
Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 19/139 (13%)
Query: 95 DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKY 153
D+ +TV A LS K + ++I V+TG + G +PN+ V
Sbjct: 99 DIEQTVFSLDYAKELSKAAEKMHKVAKIHIAVDTGM--GRIGFLPNEQSIQDVKAISMLP 156
Query: 154 QLNVEGLMCIPPAMGNPKPH--------FYLLSEIARECKLTKLSMGMTR-----DFELA 200
+ ++G+ F E + + + ++ D
Sbjct: 157 NIKIKGMFSHFSTADEKNKEYSAYQLNQFNKFYEGLKRENVNIETRHISNSAAIMDLPET 216
Query: 201 IASGATSVRIGSGIFGERP 219
I G VR G ++G P
Sbjct: 217 IFEG---VRPGIILYGYYP 232
>gi|254976416|ref|ZP_05272888.1| putative amino acid racemase [Clostridium difficile QCD-66c26]
gi|255093801|ref|ZP_05323279.1| putative amino acid racemase [Clostridium difficile CIP 107932]
gi|255315553|ref|ZP_05357136.1| putative amino acid racemase [Clostridium difficile QCD-76w55]
gi|255518216|ref|ZP_05385892.1| putative amino acid racemase [Clostridium difficile QCD-97b34]
gi|255651332|ref|ZP_05398234.1| putative amino acid racemase [Clostridium difficile QCD-37x79]
gi|260684394|ref|YP_003215679.1| putative amino acid racemase [Clostridium difficile CD196]
gi|260688053|ref|YP_003219187.1| putative amino acid racemase [Clostridium difficile R20291]
gi|306521163|ref|ZP_07407510.1| putative amino acid racemase [Clostridium difficile QCD-32g58]
gi|260210557|emb|CBA65100.1| putative amino acid racemase [Clostridium difficile CD196]
gi|260214070|emb|CBE06245.1| putative amino acid racemase [Clostridium difficile R20291]
Length = 370
Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
++G + N++ + S ++I + A S K + I V+ G + + G+
Sbjct: 85 YMGEVNINRIVTMASKINLICATDNIECAKAYSEAFSKSKIECKLLIIVDCG--LHRFGV 142
Query: 138 MPNQTKDFVILCRQKYQLNVEGL 160
P + + + + + G+
Sbjct: 143 EPEKVVELATEISKLENIKIVGI 165
>gi|299068847|emb|CBJ40088.1| putative diaminopimelate decarboxylase protein (lysA) [Ralstonia
solanacearum CMR15]
Length = 413
Score = 44.3 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 29/132 (21%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------------TGY 130
+ ++I V E L + R V ++VN G
Sbjct: 102 ALERGVELIH-VESELQLRRLDAIACRMGRRARVLLRVNPNPLAADAGGKRPQGTLTMGG 160
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLS-------EIAR 182
+ + GI + D + L R + V GL + H L+ + R
Sbjct: 161 QPTQFGIEEDAVPDLIRLARTLPGVEVVGLHLHALSNNLDADSHLALMRHYLALALRLRR 220
Query: 183 ECK--LTKLSMG 192
E L L++G
Sbjct: 221 EHGLTLDTLNVG 232
>gi|330505234|ref|YP_004382103.1| alanine racemase domain-containing protein [Pseudomonas mendocina
NK-01]
gi|328919520|gb|AEB60351.1| alanine racemase domain-containing protein [Pseudomonas mendocina
NK-01]
Length = 420
Score = 44.3 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM-PNQTKDFVILCRQKYQLNVE 158
+ + + R L + ++++ G E + G P + Q L ++
Sbjct: 153 IDSRQRLQQYAELATALGRPLRIALEIDIGLE--RGGFATPQALAQAMQQLGQLPGLQLQ 210
Query: 159 GLMCIPPAMG 168
GLM +
Sbjct: 211 GLMGYDAHVA 220
>gi|325923438|ref|ZP_08185098.1| diaminopimelate decarboxylase [Xanthomonas gardneri ATCC 19865]
gi|325546083|gb|EGD17277.1| diaminopimelate decarboxylase [Xanthomonas gardneri ATCC 19865]
Length = 431
Score = 44.3 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 24/116 (20%)
Query: 87 VSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQ 133
+++ +L D + V L+ + R +PV++++N G +
Sbjct: 107 LAQAAALPDCTVH-VESLGELERLATIAAQAGRCVPVFLRMNIAVPGAQSTRLMMGGQPS 165
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEG----LMCIPPAMGNPKPHFYLLSEIARECK 185
G+ P+ + R L +EG LM + + L IA +
Sbjct: 166 PFGLDPDDLDAAIHRLRASPSLRLEGFHFHLMS------HQRDAGAQLHLIAAYLR 215
>gi|316934654|ref|YP_004109636.1| alanine racemase domain-containing protein [Rhodopseudomonas
palustris DX-1]
gi|315602368|gb|ADU44903.1| alanine racemase domain protein [Rhodopseudomonas palustris DX-1]
Length = 360
Score = 44.3 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 77/228 (33%), Gaps = 28/228 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMV-DSKKIRVALSCGQVIF-----AEN 56
+ + + + + ++A +A RP K ++ + G E
Sbjct: 25 VEHNIARIQA-LCDAAGVANRPHI--------KTHKSPLLAKMQIDAGARGITCQKLGE- 74
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
A+ + + IG + ++ + + + L +
Sbjct: 75 ----AEVMADAGIDDILISYNLIGEEKMARLGALHERAAMTVAADNAVVIAGLPAAAARA 130
Query: 117 SRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
R L V ++ +TG Q++G+ P + + L+ +G M P P+ +
Sbjct: 131 GRPLGVVVECDTGR--QRAGVETPAEAVALARMIAASEGLSFKGFMLYPTEDDWPRTQRF 188
Query: 176 LLSEIA--RECKLTKL--SMGMTRDFE-LAIASGATSVRIGSGIFGER 218
+A R L S G + + + L GAT R G+ I+ +R
Sbjct: 189 FDEALAGVRAHGLDAAMVSTGGSPNLKNLGQLKGATEHRPGTYIYNDR 236
>gi|255656805|ref|ZP_05402214.1| putative amino acid racemase [Clostridium difficile QCD-23m63]
gi|296452364|ref|ZP_06894066.1| serine racemase [Clostridium difficile NAP08]
gi|296877713|ref|ZP_06901741.1| serine racemase [Clostridium difficile NAP07]
gi|296258793|gb|EFH05686.1| serine racemase [Clostridium difficile NAP08]
gi|296431335|gb|EFH17154.1| serine racemase [Clostridium difficile NAP07]
Length = 370
Score = 44.3 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
++G + N++ + S ++I + A S K + I V+ G + + G+
Sbjct: 85 YMGEVNINRIVTMASKINLICATDNIECAKAYSEAFSKSKLECKLLIIVDCG--LHRFGV 142
Query: 138 MPNQTKDFVILCRQKYQLNVEGL 160
P + + + + + G+
Sbjct: 143 EPEKVVELATEISKLENIKIVGI 165
>gi|119899943|ref|YP_935156.1| LysA2 protein [Azoarcus sp. BH72]
gi|119672356|emb|CAL96270.1| LysA2 protein [Azoarcus sp. BH72]
Length = 424
Score = 44.3 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 13/86 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L+ + + P+ ++VN + K G+ + +
Sbjct: 134 VESAPELERLNEVAGELGQRAPIALRVNPDVDPKTHPYISTGLKSNKFGVAFGEALELYR 193
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKP 172
L + G+ C I + +P P
Sbjct: 194 RAATLPHLRISGIACHIGSQLLDPAP 219
>gi|91790607|ref|YP_551559.1| Orn/DAP/Arg decarboxylase 2 [Polaromonas sp. JS666]
gi|91699832|gb|ABE46661.1| Orn/DAP/Arg decarboxylase 2 [Polaromonas sp. JS666]
Length = 408
Score = 44.3 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 18/115 (15%)
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMIKQS 117
E + F G +++ + S + I V L+
Sbjct: 80 ELAWVREHFPSTPLI---FSGPGKTDAELRLALDSDVEAIH-VESLHELRRLAWLAEAAG 135
Query: 118 RFLPVYIQVNT------------GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
R PV ++VN G + GI +Q + R+ L + G
Sbjct: 136 RTAPVLLRVNLPLPGLAATTLMMGGKATPFGIAVDQLPACLASLREAPGLRLRGF 190
>gi|17548645|ref|NP_521985.1| diaminopimelate decarboxylase protein [Ralstonia solanacearum
GMI1000]
gi|17430893|emb|CAD17575.1| probable staphyloferrin b siderophore synthesis decarboxylase
protein [Ralstonia solanacearum GMI1000]
Length = 413
Score = 44.3 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 29/132 (21%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------------TGY 130
+ ++I V E L + R V ++VN G
Sbjct: 102 ALERGVELIH-VESELQLRRLDAIACRMGRRARVLLRVNPNPLSADAVGKRAQGTLTMGG 160
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLS-------EIAR 182
+ + GI + D + L R + V GL + H L+ + R
Sbjct: 161 QPTQFGIEEDAVPDLIRLARTLPGVEVVGLHLHALSNNLDADSHLALMRHYLSLALRLRR 220
Query: 183 ECK--LTKLSMG 192
E L L++G
Sbjct: 221 EHGLTLDTLNVG 232
>gi|157164932|ref|YP_001467250.1| putative GlnD family protein [Campylobacter concisus 13826]
gi|112801837|gb|EAT99181.1| metal-activated pyridoxal enzyme [Campylobacter concisus 13826]
Length = 368
Score = 44.3 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 24/136 (17%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVE 158
V L+ + + +++ G +SG++ + + ++ +
Sbjct: 108 VDNVGVLRLIDEVFGEAGEIARLLVEIEVG--ENRSGVIEEGDFRALMGAFKECKNVEFC 165
Query: 159 GLMC------IPPAMGNPKPHFY-------LLSEIARECKLT--KLSMG----MTRDFEL 199
G+ + F ++IARE +S+G + DFE
Sbjct: 166 GVFSHDGHSYKAKDKRECEQIFRVATDRTLKFADIAREFGYENFTVSIGSTPSLINDFE- 224
Query: 200 AIASGATSVRIGSGIF 215
I G T +R G+ IF
Sbjct: 225 -IPKGVTELRPGTYIF 239
>gi|310780443|ref|YP_003968775.1| diaminopimelate decarboxylase [Ilyobacter polytropus DSM 2926]
gi|309749766|gb|ADO84427.1| diaminopimelate decarboxylase [Ilyobacter polytropus DSM 2926]
Length = 433
Score = 44.3 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 22/111 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMP--NQTKDF 145
V L ++ + + V ++VN G E K G KD
Sbjct: 129 VDNRDELDKLERVCREKGKKINVLLRVNPGIEAHTHEYIQTSTYSSKFGESIFDENIKDI 188
Query: 146 VILCRQKYQLNVEGLMC-IPPAMGNPKPHFYLL-------SEIARECKLTK 188
+ + ++G C I + + KP F + ++ E L
Sbjct: 189 IKKFIAAEHVELKGFHCHIGSQIFDEKPFFAAMDTMLKFIKQMKDEAGLDT 239
>gi|320354045|ref|YP_004195384.1| alanine racemase [Desulfobulbus propionicus DSM 2032]
gi|320122547|gb|ADW18093.1| alanine racemase [Desulfobulbus propionicus DSM 2032]
Length = 374
Score = 44.3 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 16/124 (12%)
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM 167
LS Q R + V+ V + + G++P D V R L ++G+M P
Sbjct: 109 ELSRLAGLQRREIGVH--VKLDAGMGRQGVLPEDFVDLVRTVRGAPHLRLDGVMAHFPCS 166
Query: 168 GNPKPHFYLLSEIARECKLTKLSM------GM------TRDFELAIASGATSVRIGSGIF 215
P+ +++ R T S+ G + + VR G ++
Sbjct: 167 DEPQS--ANSAQVLRTFTATTASLAALTGGGCCLHLANSGGLFYVAGARLDMVRPGIALY 224
Query: 216 GERP 219
G P
Sbjct: 225 GYYP 228
>gi|294851220|ref|ZP_06791893.1| diaminopimelate decarboxylase [Brucella sp. NVSL 07-0026]
gi|294819809|gb|EFG36808.1| diaminopimelate decarboxylase [Brucella sp. NVSL 07-0026]
Length = 421
Score = 44.3 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E +LS + + PV +++N TG K GI ++ +
Sbjct: 124 VESEPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIARECKLT 187
LNV G+ M I + + +P F L++E+ +E +
Sbjct: 184 RAASLPGLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQAD 227
>gi|256112311|ref|ZP_05453232.1| diaminopimelate decarboxylase [Brucella melitensis bv. 3 str.
Ether]
gi|265993744|ref|ZP_06106301.1| diaminopimelate decarboxylase [Brucella melitensis bv. 3 str.
Ether]
gi|262764725|gb|EEZ10646.1| diaminopimelate decarboxylase [Brucella melitensis bv. 3 str.
Ether]
Length = 421
Score = 44.3 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E +LS + + PV +++N TG K GI ++ +
Sbjct: 124 VESEPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIARECKLT 187
LNV G+ M I + + +P F L++E+ +E +
Sbjct: 184 RAASLPGLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQAD 227
>gi|256059955|ref|ZP_05450139.1| diaminopimelate decarboxylase [Brucella neotomae 5K33]
gi|261323926|ref|ZP_05963123.1| diaminopimelate decarboxylase [Brucella neotomae 5K33]
gi|261299906|gb|EEY03403.1| diaminopimelate decarboxylase [Brucella neotomae 5K33]
Length = 421
Score = 44.3 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E +LS + + PV +++N TG K GI ++ +
Sbjct: 124 VESEPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIARECKLT 187
LNV G+ M I + + +P F L++E+ +E +
Sbjct: 184 RAASLPGLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQAD 227
>gi|256370385|ref|YP_003107896.1| diaminopimelate decarboxylase [Brucella microti CCM 4915]
gi|256000548|gb|ACU48947.1| diaminopimelate decarboxylase [Brucella microti CCM 4915]
Length = 421
Score = 44.3 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E +LS + + PV +++N TG K GI ++ +
Sbjct: 124 VESEPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIARECKLT 187
LNV G+ M I + + +P F L++E+ +E +
Sbjct: 184 RAASLPGLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQAD 227
>gi|170680265|ref|YP_001746805.1| putative D-serine ammonia-lyase [Escherichia coli SMS-3-5]
gi|170517983|gb|ACB16161.1| putative D-serine ammonia-lyase [Escherichia coli SMS-3-5]
Length = 406
Score = 44.3 bits (104), Expect = 0.014, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 35/118 (29%), Gaps = 10/118 (8%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
I LQ + D I + + A LS Q + L V I+ G + G
Sbjct: 114 LIAQLQRH-----YPTVDFISCIDSIENARALSAFFASQQQTLNVMIE--LGVPGGRCGC 166
Query: 138 -MPNQTKDFVILCRQKYQLNVEGLMCIPP--AMGNPKPHFYLLSEIARECKLTKLSMG 192
+ Q L + GL +P+P L A + S+
Sbjct: 167 RSRDAALTLAKQAAQLPGLRLRGLELYEGVLHGDDPQPQVEALLRDAAQLACDMASLV 224
>gi|312132077|ref|YP_003999417.1| alanine racemase domain protein [Leadbetterella byssophila DSM
17132]
gi|311908623|gb|ADQ19064.1| alanine racemase domain protein [Leadbetterella byssophila DSM
17132]
Length = 355
Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TK 143
K+ + + V + A + E+ + + VYI VN G ++GI P + K
Sbjct: 96 QKLKDQYPHTKMCLLVDCMEVAEEIQRELKE----VDVYIDVNVGM--NRTGIQPGEGLK 149
Query: 144 DFVILCRQKYQLNVEGL 160
+ + ++ + ++GL
Sbjct: 150 ELIAYVKKCSNMKLKGL 166
>gi|306843420|ref|ZP_07476021.1| diaminopimelate decarboxylase [Brucella sp. BO1]
gi|306276111|gb|EFM57811.1| diaminopimelate decarboxylase [Brucella sp. BO1]
Length = 421
Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E +LS + + PV +++N TG K GI ++ +
Sbjct: 124 VESEPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIARECKLT 187
LNV G+ M I + + +P F L++E+ +E +
Sbjct: 184 RAASLPGLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQAD 227
>gi|23502831|ref|NP_698958.1| diaminopimelate decarboxylase [Brucella suis 1330]
gi|62290831|ref|YP_222624.1| LysA, diaminopimelate decarboxylase [Brucella abortus bv. 1 str.
9-941]
gi|82700743|ref|YP_415317.1| diaminopimelate decarboxylase [Brucella melitensis biovar Abortus
2308]
gi|148560505|ref|YP_001259800.1| diaminopimelate decarboxylase [Brucella ovis ATCC 25840]
gi|161619901|ref|YP_001593788.1| diaminopimelate decarboxylase [Brucella canis ATCC 23365]
gi|189025050|ref|YP_001935818.1| diaminopimelate decarboxylase [Brucella abortus S19]
gi|225628182|ref|ZP_03786217.1| diaminopimelate decarboxylase [Brucella ceti str. Cudo]
gi|225853419|ref|YP_002733652.1| diaminopimelate decarboxylase [Brucella melitensis ATCC 23457]
gi|237816345|ref|ZP_04595338.1| diaminopimelate decarboxylase [Brucella abortus str. 2308 A]
gi|254690121|ref|ZP_05153375.1| diaminopimelate decarboxylase [Brucella abortus bv. 6 str. 870]
gi|254694611|ref|ZP_05156439.1| diaminopimelate decarboxylase [Brucella abortus bv. 3 str. Tulya]
gi|254696236|ref|ZP_05158064.1| diaminopimelate decarboxylase [Brucella abortus bv. 2 str. 86/8/59]
gi|254700621|ref|ZP_05162449.1| diaminopimelate decarboxylase [Brucella suis bv. 5 str. 513]
gi|254704991|ref|ZP_05166819.1| diaminopimelate decarboxylase [Brucella suis bv. 3 str. 686]
gi|254707493|ref|ZP_05169321.1| diaminopimelate decarboxylase [Brucella pinnipedialis M163/99/10]
gi|254708966|ref|ZP_05170777.1| diaminopimelate decarboxylase [Brucella pinnipedialis B2/94]
gi|254731154|ref|ZP_05189732.1| diaminopimelate decarboxylase [Brucella abortus bv. 4 str. 292]
gi|256030493|ref|ZP_05444107.1| diaminopimelate decarboxylase [Brucella pinnipedialis M292/94/1]
gi|256158479|ref|ZP_05456377.1| diaminopimelate decarboxylase [Brucella ceti M490/95/1]
gi|256253898|ref|ZP_05459434.1| diaminopimelate decarboxylase [Brucella ceti B1/94]
gi|256258375|ref|ZP_05463911.1| diaminopimelate decarboxylase [Brucella abortus bv. 9 str. C68]
gi|256263101|ref|ZP_05465633.1| diaminopimelate decarboxylase [Brucella melitensis bv. 2 str. 63/9]
gi|260169399|ref|ZP_05756210.1| diaminopimelate decarboxylase [Brucella sp. F5/99]
gi|260546098|ref|ZP_05821838.1| diaminopimelate decarboxylase [Brucella abortus NCTC 8038]
gi|260567535|ref|ZP_05838005.1| diaminopimelate decarboxylase [Brucella suis bv. 4 str. 40]
gi|260755660|ref|ZP_05868008.1| diaminopimelate decarboxylase [Brucella abortus bv. 6 str. 870]
gi|260758885|ref|ZP_05871233.1| diaminopimelate decarboxylase [Brucella abortus bv. 4 str. 292]
gi|260760609|ref|ZP_05872952.1| diaminopimelate decarboxylase [Brucella abortus bv. 2 str. 86/8/59]
gi|260884685|ref|ZP_05896299.1| diaminopimelate decarboxylase [Brucella abortus bv. 9 str. C68]
gi|261214935|ref|ZP_05929216.1| diaminopimelate decarboxylase [Brucella abortus bv. 3 str. Tulya]
gi|261221035|ref|ZP_05935316.1| diaminopimelate decarboxylase [Brucella ceti B1/94]
gi|261314977|ref|ZP_05954174.1| diaminopimelate decarboxylase [Brucella pinnipedialis M163/99/10]
gi|261316465|ref|ZP_05955662.1| diaminopimelate decarboxylase [Brucella pinnipedialis B2/94]
gi|261751130|ref|ZP_05994839.1| diaminopimelate decarboxylase [Brucella suis bv. 5 str. 513]
gi|261755692|ref|ZP_05999401.1| diaminopimelate decarboxylase [Brucella suis bv. 3 str. 686]
gi|261758922|ref|ZP_06002631.1| diaminopimelate decarboxylase [Brucella sp. F5/99]
gi|265987535|ref|ZP_06100092.1| diaminopimelate decarboxylase [Brucella pinnipedialis M292/94/1]
gi|265996995|ref|ZP_06109552.1| diaminopimelate decarboxylase [Brucella ceti M490/95/1]
gi|297247217|ref|ZP_06930935.1| diaminopimelate decarboxylase [Brucella abortus bv. 5 str. B3196]
gi|23348856|gb|AAN30873.1| diaminopimelate decarboxylase [Brucella suis 1330]
gi|62196963|gb|AAX75263.1| LysA, diaminopimelate decarboxylase [Brucella abortus bv. 1 str.
9-941]
gi|82616844|emb|CAJ11940.1| Orn/DAP/Arg decarboxylase, family 2:ATP/GTP-binding site motif A
(P-loop):Diaminopimelate decarboxylase [Brucella
melitensis biovar Abortus 2308]
gi|148371762|gb|ABQ61741.1| diaminopimelate decarboxylase [Brucella ovis ATCC 25840]
gi|161336712|gb|ABX63017.1| diaminopimelate decarboxylase [Brucella canis ATCC 23365]
gi|189020622|gb|ACD73344.1| diaminopimelate decarboxylase [Brucella abortus S19]
gi|225617007|gb|EEH14054.1| diaminopimelate decarboxylase [Brucella ceti str. Cudo]
gi|225641784|gb|ACO01698.1| diaminopimelate decarboxylase [Brucella melitensis ATCC 23457]
gi|237788412|gb|EEP62627.1| diaminopimelate decarboxylase [Brucella abortus str. 2308 A]
gi|260096205|gb|EEW80081.1| diaminopimelate decarboxylase [Brucella abortus NCTC 8038]
gi|260157053|gb|EEW92133.1| diaminopimelate decarboxylase [Brucella suis bv. 4 str. 40]
gi|260669203|gb|EEX56143.1| diaminopimelate decarboxylase [Brucella abortus bv. 4 str. 292]
gi|260671041|gb|EEX57862.1| diaminopimelate decarboxylase [Brucella abortus bv. 2 str. 86/8/59]
gi|260675768|gb|EEX62589.1| diaminopimelate decarboxylase [Brucella abortus bv. 6 str. 870]
gi|260874213|gb|EEX81282.1| diaminopimelate decarboxylase [Brucella abortus bv. 9 str. C68]
gi|260916542|gb|EEX83403.1| diaminopimelate decarboxylase [Brucella abortus bv. 3 str. Tulya]
gi|260919619|gb|EEX86272.1| diaminopimelate decarboxylase [Brucella ceti B1/94]
gi|261295688|gb|EEX99184.1| diaminopimelate decarboxylase [Brucella pinnipedialis B2/94]
gi|261304003|gb|EEY07500.1| diaminopimelate decarboxylase [Brucella pinnipedialis M163/99/10]
gi|261738906|gb|EEY26902.1| diaminopimelate decarboxylase [Brucella sp. F5/99]
gi|261740883|gb|EEY28809.1| diaminopimelate decarboxylase [Brucella suis bv. 5 str. 513]
gi|261745445|gb|EEY33371.1| diaminopimelate decarboxylase [Brucella suis bv. 3 str. 686]
gi|262551463|gb|EEZ07453.1| diaminopimelate decarboxylase [Brucella ceti M490/95/1]
gi|263093002|gb|EEZ17152.1| diaminopimelate decarboxylase [Brucella melitensis bv. 2 str. 63/9]
gi|264659732|gb|EEZ29993.1| diaminopimelate decarboxylase [Brucella pinnipedialis M292/94/1]
gi|297174386|gb|EFH33733.1| diaminopimelate decarboxylase [Brucella abortus bv. 5 str. B3196]
gi|326409982|gb|ADZ67047.1| diaminopimelate decarboxylase [Brucella melitensis M28]
gi|326539699|gb|ADZ87914.1| diaminopimelate decarboxylase [Brucella melitensis M5-90]
Length = 421
Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E +LS + + PV +++N TG K GI ++ +
Sbjct: 124 VESEPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIARECKLT 187
LNV G+ M I + + +P F L++E+ +E +
Sbjct: 184 RAASLPGLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQAD 227
>gi|306842881|ref|ZP_07475518.1| diaminopimelate decarboxylase [Brucella sp. BO2]
gi|306286968|gb|EFM58485.1| diaminopimelate decarboxylase [Brucella sp. BO2]
Length = 421
Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E +LS + + PV +++N TG K GI ++ +
Sbjct: 124 VESEPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIARECKLT 187
LNV G+ M I + + +P F L++E+ +E +
Sbjct: 184 RAASLPGLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQAD 227
>gi|256045584|ref|ZP_05448464.1| diaminopimelate decarboxylase [Brucella melitensis bv. 1 str.
Rev.1]
gi|260562895|ref|ZP_05833381.1| diaminopimelate decarboxylase [Brucella melitensis bv. 1 str. 16M]
gi|265992008|ref|ZP_06104565.1| diaminopimelate decarboxylase [Brucella melitensis bv. 1 str.
Rev.1]
gi|260152911|gb|EEW88003.1| diaminopimelate decarboxylase [Brucella melitensis bv. 1 str. 16M]
gi|263003074|gb|EEZ15367.1| diaminopimelate decarboxylase [Brucella melitensis bv. 1 str.
Rev.1]
Length = 421
Score = 43.9 bits (103), Expect = 0.014, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E +LS + + PV +++N TG K GI ++ +
Sbjct: 124 VESEPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIARECKLT 187
LNV G+ M I + + +P F L++E+ +E +
Sbjct: 184 RAASLPGLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQAD 227
>gi|319943626|ref|ZP_08017907.1| alanine racemase [Lautropia mirabilis ATCC 51599]
gi|319742859|gb|EFV95265.1| alanine racemase [Lautropia mirabilis ATCC 51599]
Length = 386
Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 37/248 (14%), Positives = 76/248 (30%), Gaps = 56/248 (22%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSV----SLVAVSKMVDSKKIRVALSCGQ----VIF 53
++ + L + +++++ RP V L AV K A G F
Sbjct: 27 AMAHNLALIRRQVQE-----NRPDGHVQADTRLWAVVK-------ADAYGHGLANALTGF 74
Query: 54 AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSLFDVIETVSREKTASL---- 108
AE + L + L+ + I+ L + + A+
Sbjct: 75 AE-------ADGMALLEFEAADW-----LRRHGWTKPILMLEGAFDATDVAQAAAQGLTL 122
Query: 109 -------LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161
L + VY+++NTG + + G+ P+ ++ + + G+M
Sbjct: 123 AIHQPRHLQWLAAHDGPPVDVYLKLNTG--LNRLGLKPDDVDAYLTQVLATPGVRLRGMM 180
Query: 162 CIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA----------TSVRIG 211
P L+ + + + + E +A+ A R G
Sbjct: 181 THFANADTPGGALQPLATFDAVARAVQARLPAGQTLEHCVANSAALFTLPQAYRAWARPG 240
Query: 212 SGIFGERP 219
++G P
Sbjct: 241 IALYGASP 248
>gi|254718034|ref|ZP_05179845.1| diaminopimelate decarboxylase [Brucella sp. 83/13]
gi|265982981|ref|ZP_06095716.1| diaminopimelate decarboxylase [Brucella sp. 83/13]
gi|306837594|ref|ZP_07470465.1| diaminopimelate decarboxylase [Brucella sp. NF 2653]
gi|264661573|gb|EEZ31834.1| diaminopimelate decarboxylase [Brucella sp. 83/13]
gi|306407301|gb|EFM63509.1| diaminopimelate decarboxylase [Brucella sp. NF 2653]
Length = 421
Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E +LS + + PV +++N TG K GI ++ +
Sbjct: 124 VESEPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIARECKLT 187
LNV G+ M I + + +P F L++E+ +E +
Sbjct: 184 RAASLPGLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQAD 227
>gi|163844005|ref|YP_001628409.1| diaminopimelate decarboxylase [Brucella suis ATCC 23445]
gi|163674728|gb|ABY38839.1| diaminopimelate decarboxylase [Brucella suis ATCC 23445]
Length = 421
Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E +LS + + PV +++N TG K GI ++ +
Sbjct: 124 VESEPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIARECKLT 187
LNV G+ M I + + +P F L++E+ +E +
Sbjct: 184 RAASLPGLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQAD 227
>gi|150018925|ref|YP_001311179.1| alanine racemase [Clostridium beijerinckii NCIMB 8052]
gi|149905390|gb|ABR36223.1| alanine racemase [Clostridium beijerinckii NCIMB 8052]
Length = 387
Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 20/129 (15%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQK 152
+D+ +TV A LS + ++ ++I ++TG + G +P + D +
Sbjct: 98 YDLEQTVYDLDYAKELSKTALSLNKKAKIHIAIDTGM--GRIGFLPTEKAIDAICKICSL 155
Query: 153 YQLNVEGLMCIPPAMGN-----PKPHFYLLSEIAR-------ECKLTKLS-----MGMTR 195
L V G+ F +++ + E + +S M M
Sbjct: 156 EGLEVIGIFTHFSTSDEKDKEYTNEQFEKFTDLLKKLSNLNIEIPIKHVSNSGAIMDMPE 215
Query: 196 DFELAIASG 204
+ A+ +G
Sbjct: 216 TYLDAVRAG 224
>gi|46117817|ref|XP_384835.1| hypothetical protein FG04659.1 [Gibberella zeae PH-1]
Length = 366
Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 26/153 (16%)
Query: 86 KVSEIVSLFDVIET----VSREKTASLLSLEMIKQS--RFLPVYIQVNTGYEIQKSGIMP 139
KV +V LF + V A+ ++ + + V I ++ G + ++G+ P
Sbjct: 97 KVRRLVELFKKHQDLRIVVDDADAATAINNALANSGSQDPINVLIDLDVG--LHRTGVKP 154
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPPA------MGNPKPH----FYLLSEIARECK---- 185
Q+ + G+ + K +L+E A+E K
Sbjct: 155 EGALPLARHIDTLKQMRLIGVQGYEGHLQHLHDFQDRKEQCLESMRILTETAQELKKEGF 214
Query: 186 -LTKLSMGMTR--DFELAIASGATSVRIGSGIF 215
+ ++ G T DF A G T ++ GS IF
Sbjct: 215 NIEVVTTGGTGTADF-CATVPGVTELQPGSFIF 246
>gi|311107165|ref|YP_003980018.1| alanine racemase [Achromobacter xylosoxidans A8]
gi|310761854|gb|ADP17303.1| alanine racemase, N-terminal domain protein 1 [Achromobacter
xylosoxidans A8]
Length = 385
Score = 43.9 bits (103), Expect = 0.015, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 20/134 (14%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR--QKYQLNV 157
V + A ++ + +P I+++ ++G+ P T + + R + +
Sbjct: 114 VDSLEAARAVAQRGREAGDAIPALIEIDCDG--HRAGVQPGNTAQLLAIARVLHEDGACL 171
Query: 158 EGLMC-------------IPPAMGNPKPHFYLLSEIARECKL--TKLSMGMTRDFELAIA 202
G+M I + ++ R+ L +S+G T A
Sbjct: 172 RGVMTHAGESYGCDSVEAIADMAEQERLAAVTCAQAIRQAGLPCPVVSVGSTPTAHFAHR 231
Query: 203 S-GATSVRIGSGIF 215
G T VR G +F
Sbjct: 232 LDGVTEVRAGVYVF 245
>gi|282855759|ref|ZP_06265065.1| alanine racemase domain protein [Pyramidobacter piscolens W5455]
gi|282586391|gb|EFB91653.1| alanine racemase domain protein [Pyramidobacter piscolens W5455]
Length = 369
Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 31/202 (15%), Positives = 65/202 (32%), Gaps = 22/202 (10%)
Query: 34 SKMVDSKKIRVA-LSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS 92
+K + + G A K+ EA+ + + +G + ++ +
Sbjct: 40 TKTHKMPAVARLQVEMGARGIAVAKVGEAEAMAADGLDDIFIANEIVGVQKWERIRALAQ 99
Query: 93 LFDVIE-TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCR 150
+ V +T + R V I++ G +SG++ + R
Sbjct: 100 RGVTVSFGVDSPETLPGIQKVFSGADRPAEVMIEIEVG--EGRSGVVEENDFAALLAAIR 157
Query: 151 QKYQLNVEGLMCIPPAMGNP--KPHFYLLSEIARE-------------CKLTKLSMGMTR 195
+ + +G+ + + ++ A+E +S G T
Sbjct: 158 RCPAVRFKGIFSHDGNSYSAKDREDLIRIAVGAQERTLRFARLAAAAGMPCETVSYGATP 217
Query: 196 DF--ELAIASGATSVRIGSGIF 215
F E+ I G T +R G+ IF
Sbjct: 218 TFMNEVPILGGITELRPGTFIF 239
>gi|239636176|ref|ZP_04677180.1| alanine racemase domain protein [Staphylococcus warneri L37603]
gi|239598192|gb|EEQ80685.1| alanine racemase domain protein [Staphylococcus warneri L37603]
Length = 359
Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 31/187 (16%), Positives = 66/187 (35%), Gaps = 22/187 (11%)
Query: 42 IRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFD-VIETV 100
++ + G FA+++ + L +D + S Q +++ ++ I+T
Sbjct: 43 VQKLIDLGITHFADSR----LENIRQLTD-FDCSFTILRSTQLSQLDNMIKNAQISIQT- 96
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
T L+ + + V + V ++ + G++ ++ + + GL
Sbjct: 97 -ELNTILELNRIAEQLNLKHQVILMV--DWKDGREGVLTYDVVKYIETILNLSHIQLIGL 153
Query: 161 ----MCIPPAMGNPKPHF---YLLSEIARECK--LTKLSMGMTRDFELAI--ASGA-TSV 208
MC F +S I RE + +S G + L + G +
Sbjct: 154 SFNFMCFKSGTPIEDDVFMINKFVSAIEREIGYRMKIVSGGNSSMLPLTMYNDLGKINEL 213
Query: 209 RIGSGIF 215
RIG +F
Sbjct: 214 RIGETLF 220
>gi|325924786|ref|ZP_08186222.1| diaminopimelate decarboxylase [Xanthomonas perforans 91-118]
gi|325544802|gb|EGD16149.1| diaminopimelate decarboxylase [Xanthomonas perforans 91-118]
Length = 398
Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 14/87 (16%)
Query: 87 VSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQ 133
+++ +L D + V L+ R +PV++++N G +
Sbjct: 107 LAQAAALPDCTVH-VESLSELERLAAIAAHAGRCVPVFLRMNIAVPGAQSTRLMMGGQPS 165
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGL 160
G+ P+ + + L +EG
Sbjct: 166 PFGLDPSDLDAAIRRVQANPSLRLEGF 192
>gi|254713605|ref|ZP_05175416.1| diaminopimelate decarboxylase [Brucella ceti M644/93/1]
gi|254716041|ref|ZP_05177852.1| diaminopimelate decarboxylase [Brucella ceti M13/05/1]
gi|261217809|ref|ZP_05932090.1| diaminopimelate decarboxylase [Brucella ceti M13/05/1]
gi|261321343|ref|ZP_05960540.1| diaminopimelate decarboxylase [Brucella ceti M644/93/1]
gi|260922898|gb|EEX89466.1| diaminopimelate decarboxylase [Brucella ceti M13/05/1]
gi|261294033|gb|EEX97529.1| diaminopimelate decarboxylase [Brucella ceti M644/93/1]
Length = 420
Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E +LS + + PV +++N TG K GI ++ +
Sbjct: 124 VESEPELKILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIARECKLT 187
LNV G+ M I + + +P F L++E+ +E +
Sbjct: 184 RAASLPGLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQAD 227
>gi|25027149|ref|NP_737203.1| alanine racemase [Corynebacterium efficiens YS-314]
gi|259506716|ref|ZP_05749618.1| D-alanine racemase [Corynebacterium efficiens YS-314]
gi|81846897|sp|Q8FS13|ALR_COREF RecName: Full=Alanine racemase
gi|23492430|dbj|BAC17403.1| alanine racemase [Corynebacterium efficiens YS-314]
gi|259165699|gb|EEW50253.1| D-alanine racemase [Corynebacterium efficiens YS-314]
Length = 367
Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 38/239 (15%), Positives = 76/239 (31%), Gaps = 45/239 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVALSC-GQVIFAEN 56
++ + ++ K ++ + L+AV K ++ ++ G F
Sbjct: 12 AIAHNTRLLKNRVGAA-----------KLMAVVKADGYNHGMDRVAPVMAANGADAFGVA 60
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ EA + I S + + + + + D+ V + A +L ++
Sbjct: 61 TIAEALALRATGITTPILCW--IWSPEQDWAAAVEAGIDL--AVISPRHARVL-VDAPPT 115
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI--------PPAMG 168
SR + V ++V+T + +SG+ L R + V GL P
Sbjct: 116 SRAIRVSVKVDTA--LHRSGVDEQDWDAVFTLLRDCGHIEVTGLFTHLSCADEPGNPETD 173
Query: 169 NPKPHFYLLSEIARECKLTKLS--------MGMTRDFELAIASGATSVRIGSGIFGERP 219
+ F + AR L D + VR G ++G P
Sbjct: 174 HQAETFRRAIDRARALGLEVPENHLCNSPATLTRPDLHM------DMVRPGVALYGLEP 226
>gi|148657962|ref|YP_001278167.1| alanine racemase domain-containing protein [Roseiflexus sp. RS-1]
gi|148570072|gb|ABQ92217.1| alanine racemase domain protein [Roseiflexus sp. RS-1]
Length = 349
Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 31/194 (15%), Positives = 62/194 (31%), Gaps = 18/194 (9%)
Query: 35 KMVDSKKI----RVALSCGQVI--FAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS 88
K +I A + G E A+ + + IG+ + +++
Sbjct: 41 KTHKIPQIARMQMAAGAVGITCQKLGE-----AEVMADAGIDDIFIPYNIIGAAKLERLT 95
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVI 147
+ + + L M L V ++ +TG + G+ P + + +
Sbjct: 96 ALARRVRLSVAADSVAVITGLGNAMAGTGLELTVLVECDTGM--GRCGVQTPAEAVELAL 153
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSM---GMTRDFELAIASG 204
L + L GLM P+ P + + R+ + + G +
Sbjct: 154 LITRTPGLRFGGLMTY-PSSPEIGPFMHEAVRLLRDRGIAVERVSGGGTAGMWRAHEHPQ 212
Query: 205 ATSVRIGSGIFGER 218
T R G I+G+R
Sbjct: 213 ITEYRAGMYIYGDR 226
>gi|283832821|ref|ZP_06352562.1| alanine racemase [Citrobacter youngae ATCC 29220]
gi|291071417|gb|EFE09526.1| alanine racemase [Citrobacter youngae ATCC 29220]
Length = 356
Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 13/132 (9%)
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
L + + + K +L+ + + L VY++VN+G + + G +P++ R
Sbjct: 95 RLTTCVHSNWQLK-----ALQNARLNAPLDVYLKVNSG--MNRLGFLPDRVSTVWQQLRA 147
Query: 152 KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI----ASGATS 207
+ LM +P ++ IA+ + + ++ A +
Sbjct: 148 MPNVGEMTLMSHFADAEHPNGIQEAMTRIAQATEGLECRRSLSN--SAATLWHPEAHFDW 205
Query: 208 VRIGSGIFGERP 219
VR G ++G P
Sbjct: 206 VRPGIILYGASP 217
>gi|256020725|ref|ZP_05434590.1| hypothetical protein ShiD9_17550 [Shigella sp. D9]
gi|332281924|ref|ZP_08394337.1| alanine racemase [Shigella sp. D9]
gi|332104276|gb|EGJ07622.1| alanine racemase [Shigella sp. D9]
Length = 250
Score = 43.9 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 14/119 (11%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRVQFVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAVGKVLPTPNLHTLIQARDQL 221
>gi|302337568|ref|YP_003802774.1| alanine racemase [Spirochaeta smaragdinae DSM 11293]
gi|301634753|gb|ADK80180.1| alanine racemase [Spirochaeta smaragdinae DSM 11293]
Length = 402
Score = 43.9 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 47/136 (34%), Gaps = 17/136 (12%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
+VS A ++ K + V++ V+TG + G P++ L +E
Sbjct: 108 SVSSLAYAEKVARVAEKAGKVGKVHLNVDTGM--GRLGCFPDELMKVAGYVHHSRWLALE 165
Query: 159 GLMCIPPAMGN-----PKPHFYLLSEIARECKLTK--------LSMGMTRDFELAIASGA 205
GL P+ P L S + RE + + G DF A +
Sbjct: 166 GLFSHFPSSDEGDLSVPTAQIELFSRLDRELEAAGIRPKWRHFANSGAVIDFPAASSF-- 223
Query: 206 TSVRIGSGIFGERPCQ 221
+R G FG P +
Sbjct: 224 DMIRPGVSSFGIYPSK 239
>gi|323486703|ref|ZP_08092024.1| alanine racemase [Clostridium symbiosum WAL-14163]
gi|323400084|gb|EGA92461.1| alanine racemase [Clostridium symbiosum WAL-14163]
Length = 375
Score = 43.9 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 6/133 (4%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
+G + N + V ++I V R + A+LLS + R V+I+++TG + + G+
Sbjct: 85 LGGVPVNNLPYAVQE-NLILPVFRTQDAALLSALAQENGRTARVHIKIDTG--LGRIGVE 141
Query: 139 PNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-EIARECKLTKLSMGMTRD 196
+ ++ + L +EG+ P F + E + G+
Sbjct: 142 KGEQLEELLDGILPLKGLEIEGVFTHFGEAEVTDPEFTKIQISRFEEALGQIRARGIQPR 201
Query: 197 FELAIASGATSVR 209
+ A + +T VR
Sbjct: 202 YIHATNTPST-VR 213
>gi|297172094|gb|ADI23076.1| diaminopimelate decarboxylase [uncultured gamma proteobacterium
HF0770_07M15]
Length = 432
Score = 43.9 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 22/127 (17%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V E ++ K + P+ I+VN + K GI +
Sbjct: 124 VESEAELERINRIAGKLKKIAPIAIRVNPNVDAKTHKKITTGTYENKFGIAIEKIPALYA 183
Query: 148 LCRQKYQLNVEGL-MCIP-------PAMGNPKPHFYLLSEIARECKLTKLSM--GMTRDF 197
+ + + G+ M I P + L +++ + + +S+ G+ +
Sbjct: 184 RGAKLKHIRLRGVQMHIGSQLTQVKPFADAVRKIAPLAAKLKAKHGIEFISIGGGLGIMY 243
Query: 198 ELAIASG 204
E A+ SG
Sbjct: 244 EDALVSG 250
>gi|17986368|ref|NP_539002.1| diaminopimelate decarboxylase [Brucella melitensis bv. 1 str. 16M]
gi|17981958|gb|AAL51266.1| diaminopimelate decarboxylase [Brucella melitensis bv. 1 str. 16M]
Length = 421
Score = 43.9 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E +LS + + PV +++N TG K GI ++ +
Sbjct: 124 VESEPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIARECKLT 187
LNV G+ M I + + +P F L++E+ +E +
Sbjct: 184 RAASLPGLNVVGIDMHIGSQIIDLEPFDNAFALMAELVKELQAD 227
>gi|160939251|ref|ZP_02086602.1| hypothetical protein CLOBOL_04145 [Clostridium bolteae ATCC
BAA-613]
gi|158438214|gb|EDP15974.1| hypothetical protein CLOBOL_04145 [Clostridium bolteae ATCC
BAA-613]
Length = 396
Score = 43.9 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 20/130 (15%)
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGL 160
R + A LS +K +++ V+TG + G+ P++ D + + +EG+
Sbjct: 105 RYEEAGKLSETAVKNGARANIHLAVDTGM--SRIGMTPDEASADEAARISRLPGICIEGM 162
Query: 161 MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT-------------- 206
FY ++ + + + M +R ++ I +
Sbjct: 163 FTHFARADEADKAFYE-AQYKKYREFCE--MLCSRGVDIPIRHCSNSAGIVEGLDSNGLD 219
Query: 207 SVRIGSGIFG 216
VR G I+G
Sbjct: 220 MVRAGISIYG 229
>gi|126663893|ref|ZP_01734888.1| amino acid racemase [Flavobacteria bacterium BAL38]
gi|126624157|gb|EAZ94850.1| amino acid racemase [Flavobacteria bacterium BAL38]
Length = 357
Score = 43.9 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 37/192 (19%), Positives = 66/192 (34%), Gaps = 29/192 (15%)
Query: 42 IRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV----- 96
++ L G ++++ K K L +VQ +I + +IV DV
Sbjct: 43 LKELLDLGVTEMHDSRISNLK-KIKKL--NPEVQTVYIKPPSKLNIKKIVEFADVSFNTE 99
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156
I T+ LLS E +Q + + I + G + G++ + F +
Sbjct: 100 IYTI------KLLSEEAKRQEKIHKIIIMIEMG--DLREGVLGEELISFYEQVFSLPNIE 151
Query: 157 VEG----LMCIPPAMGNPKP-----HFYLLSEIARECKLTKLSMGMTRDFELAIASGA-- 205
+ G L C+ M + L E K+ +S G + L + +
Sbjct: 152 IRGIGTNLNCLSGVMPTQDKLIQLSLYKQLIEAKFNVKIPWVSGGTSVAVPLLLKNARPM 211
Query: 206 --TSVRIGSGIF 215
RIG +F
Sbjct: 212 AVNHFRIGEALF 223
>gi|323164938|gb|EFZ50729.1| alanine racemase, N-terminal domain protein [Shigella sonnei 53G]
Length = 246
Score = 43.9 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 14/119 (11%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q ++V++ V + TV A +S +K R V ++V + +
Sbjct: 103 GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRVQFVLLKVYSDDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC 184
Q+SG + + + V ++ L++ GL P + + P P+ + L + +
Sbjct: 163 QESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLIQARDQL 221
>gi|314934244|ref|ZP_07841603.1| putative amino acid racemase [Staphylococcus caprae C87]
gi|313652174|gb|EFS15937.1| putative amino acid racemase [Staphylococcus caprae C87]
Length = 351
Score = 43.9 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 29/184 (15%), Positives = 62/184 (33%), Gaps = 30/184 (16%)
Query: 48 CGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTAS 107
G FAE+++ + + D+ + F + +I TV + +
Sbjct: 49 LGITHFAESRI-------DNIERLRDLNITF------TLLRPTTEFETMISTV-KLSIQT 94
Query: 108 LLS--LEMIKQSRFLPVYIQVNTGYE--IQKSGIMPNQTKDFVILCRQKYQLNVEGL--- 160
L ++ ++ + V Q+ + + G++ D++ + + GL
Sbjct: 95 ELETIKQLNVIAKRMNVKHQIMLMVDWKDGREGVLTYDVLDYIKEIMSMSHIQLVGLAFN 154
Query: 161 -MCIPPAMGNPKPHF---YLLSEIAREC--KLTKLSMGMTRDFELAI--ASGA-TSVRIG 211
MC F +S + +E K +S G + + G +RIG
Sbjct: 155 FMCFKSKAPEENDVFMINKFISAVEKEIGYKFKIISGGNSSMLPQTMYNDLGKINELRIG 214
Query: 212 SGIF 215
+F
Sbjct: 215 EALF 218
>gi|78356590|ref|YP_388039.1| alanine racemase [Desulfovibrio desulfuricans subsp. desulfuricans
str. G20]
gi|78218995|gb|ABB38344.1| alanine racemase [Desulfovibrio desulfuricans subsp. desulfuricans
str. G20]
Length = 388
Score = 43.9 bits (103), Expect = 0.018, Method: Composition-based stats.
Identities = 45/242 (18%), Positives = 79/242 (32%), Gaps = 41/242 (16%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIR-VALSCGQVIFAEN 56
+L + + + V ++AV K + + L G F
Sbjct: 18 ALRHNFSAVRSHVGK----------GVRIMAVVKADAYGHGAVAVAHELLRQGADAFGVA 67
Query: 57 KLQEAKKKWIPLRKEWDVQLRFI-GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
+L EA + LR+ Q I G K +++ + +I+TV + A L ++
Sbjct: 68 RLDEAVE----LRENGITQPVLIFGPTPPQKA-PLLARYGIIQTVHSDTYAEALQAALLA 122
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQ------TKDFVILCRQKYQLNVEGLMC--IPPAM 167
Q V + + + + G + + L+V G+
Sbjct: 123 QQPRRRVQVHIKVDTGMGRLGYIATGNGGDVPLGQVFAGFSSRTMLDVCGVFTHFAASDA 182
Query: 168 GNPKPHFYLLSEIARECKLTKLSMGMTRDF-ELAIASGATSV---------RIGSGIFGE 217
+P L+ E L++L GM A S AT V R G ++G
Sbjct: 183 ADPVTARRQLAVF--EQALSELPAGMRDRLCVHAANSAATMVMPGARFDMVRPGIILYGL 240
Query: 218 RP 219
RP
Sbjct: 241 RP 242
>gi|251771481|gb|EES52058.1| alanine racemase [Leptospirillum ferrodiazotrophum]
Length = 403
Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
+ L +I + + + S E L V++++++G + G +P++ + +
Sbjct: 108 LRLTPIIHHMDQVRALERFSPEAP----SLDVHLKIDSGM--GRLGFLPSEFPLVLDRLQ 161
Query: 151 QKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+ + +EGLM P + + + EI R+
Sbjct: 162 RMPSVKIEGLMTHFPVPED-REDTSICREIFRQ 193
>gi|332716389|ref|YP_004443855.1| Diaminopimelate decarboxylase [Agrobacterium sp. H13-3]
gi|325063074|gb|ADY66764.1| Diaminopimelate decarboxylase [Agrobacterium sp. H13-3]
Length = 422
Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 16/104 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
+ E +L+L +K + V ++N TG + K GI + +
Sbjct: 124 IESEPELEVLNLRAVKAGKRAHVSFRINPDVDARTHAKISTGKKENKFGISYERARAVYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGN---PKPHFYLLSEIARECKLT 187
+ V G+ M I + + F LL E+ +
Sbjct: 184 HAATLPGIEVTGIDMHIGSQITELQPFEDAFRLLRELVESLRAD 227
>gi|183981139|ref|YP_001849430.1| alanine racemase, Alr [Mycobacterium marinum M]
gi|183174465|gb|ACC39575.1| alanine racemase, Alr [Mycobacterium marinum M]
Length = 388
Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 36/244 (14%), Positives = 80/244 (32%), Gaps = 49/244 (20%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKI-RVALSCGQVIFAEN 56
++ + +++ +++ S ++AV K + + R AL+ G V
Sbjct: 22 AIAHNVRLLRER-----------AGSAQVMAVVKADGYGHGATAVARTALAAGAVELGVA 70
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE-TVSREKTASLLSLEMIK 115
+ EA + L + + +L ++ +S + + +
Sbjct: 71 SVDEALTLRADGITAPVLAW-----LHAPGMDFGPALAADVQIAISSIRQLDEVLDAARR 125
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK---YQLNVEGLMCIPPAMGNPKP 172
V ++++TG + ++G+ P + V RQ + + GLM P+
Sbjct: 126 TGTTATVTVKIDTG--LNRNGVAPALYPEMVTRLRQAVAEDAIRLRGLMTHMVHADAPEK 183
Query: 173 -----HFYLLSEIARECKLTKLSMGMTRDFELAIASGA--TS---------VRIGSGIFG 216
++ + FE+A S + T VR G ++G
Sbjct: 184 PINDIQSQRFKQMFDHAR------DQGVRFEVAHLSNSSATMARPDLTLDLVRPGIAVYG 237
Query: 217 ERPC 220
P
Sbjct: 238 LSPV 241
>gi|15896574|ref|NP_349923.1| alanine racemase [Clostridium acetobutylicum ATCC 824]
gi|20137413|sp|Q97DY9|ALR2_CLOAB RecName: Full=Alanine racemase 2
gi|15026412|gb|AAK81263.1|AE007830_4 Alanine racemase [Clostridium acetobutylicum ATCC 824]
gi|325510735|gb|ADZ22371.1| Alanine racemase [Clostridium acetobutylicum EA 2018]
Length = 395
Score = 43.5 bits (102), Expect = 0.019, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 22/132 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY-QLNVE 158
V E+ L + + +++++NTG + + G+ P F+ +KY + V+
Sbjct: 126 VDSEEIVEALDQSASQNDTIVKLHVKINTG--LNRYGVNPENAVKFIREIHEKYLHVQVD 183
Query: 159 GLMCIPPAMGNPKPHF-----YLLSEIARECKLTKL---------SMGMTRDFELAIASG 204
G+ + P F + I + + KL S G+ + A
Sbjct: 184 GVYT-HFQDPDYNPDFTHKQIECFNNIIFQLQKQKLRPRIIHAANSTGII-RYPEA---H 238
Query: 205 ATSVRIGSGIFG 216
VR G+ +FG
Sbjct: 239 YDMVRCGTLLFG 250
>gi|78048867|ref|YP_365042.1| putative diaminopimelate decarboxylase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78037297|emb|CAJ25042.1| putative diaminopimelate decarboxylase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 429
Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 14/87 (16%)
Query: 87 VSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQ 133
+++ +L D + V L+ R +PV++++N G +
Sbjct: 107 LAQAAALPDCTVH-VESLSELERLAAIAAHAGRCVPVFLRMNIAVPGAQSTRLMMGGQPS 165
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGL 160
G+ P+ V + L +EG
Sbjct: 166 PFGLDPSDLDAAVRRVQANPSLRLEGF 192
>gi|187477177|ref|YP_785201.1| pyridoxal phosphate binding aldolase [Bordetella avium 197N]
gi|115421763|emb|CAJ48274.1| putative pyridoxal phosphate binding aldolase [Bordetella avium
197N]
Length = 382
Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 22/135 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY--QLNV 157
V + A L+ +P I+++ ++G+ P Q + R + +
Sbjct: 113 VDSVEAAQALASRSRAAGAPIPALIEIDADG--HRAGVRPEQQALLCAIGRALHEGGAEL 170
Query: 158 EGLMCIPPAMGNPKPHFYLLSEIARE----------------CKLTKLSMGMTRDFELAI 201
G+M + P + ++A +S+G T A
Sbjct: 171 RGVMTHAGESYSS-PDVVAIRDMAERERSAAVRAAAVLREQGLPCPVVSVGSTPTAMFAE 229
Query: 202 -ASGATSVRIGSGIF 215
G T VR G +F
Sbjct: 230 NLEGVTEVRAGVYVF 244
>gi|242371844|ref|ZP_04817418.1| amino acid racemase [Staphylococcus epidermidis M23864:W1]
gi|242350351|gb|EES41952.1| amino acid racemase [Staphylococcus epidermidis M23864:W1]
Length = 353
Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 22/181 (12%)
Query: 48 CGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV-IETVSREKTA 106
G FAE++L I K+ DV + ++ +VS + I+T T
Sbjct: 49 LGITHFAESRLD-----NIERLKDLDVTFTLLRPTTESEFEAMVSKVKMSIQT--ELHTI 101
Query: 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG----LMC 162
L+ K + + + + ++ + G++ T DF+ + + G MC
Sbjct: 102 KKLNTIAKKLNVKHQIMLMI--DWKDGREGVLTYDTLDFIKEIMNLNHIQLVGVAFNFMC 159
Query: 163 IPPAMGNPKPHF---YLLSEIAREC--KLTKLSMGMTRDFELAI--ASGA-TSVRIGSGI 214
A F +S + +E K +S G + + G +RIG +
Sbjct: 160 FKSAAPEENDVFMINKFVSAVEKEMGYKFKIISGGNSSMLPQTMYNDLGKINELRIGEAL 219
Query: 215 F 215
F
Sbjct: 220 F 220
>gi|298693389|gb|ADI96611.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus ED133]
Length = 400
Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 16/115 (13%)
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSL-FDVIETVSREKTASLLSLEMIKQ 116
Q K + + + F G ++++ + VS I V L+ + +
Sbjct: 73 QGEIAKGLAFKPANHII--FGGPGKTDEELRYAVSEGVQRIH-VESMHELQRLNAILEDE 129
Query: 117 SRFLPVYIQVNT-----------GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ + ++VN + GI ++ D + ++++G
Sbjct: 130 DKTQHILLRVNLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALAMPNIHLDGF 184
>gi|291459573|ref|ZP_06598963.1| alanine racemase [Oribacterium sp. oral taxon 078 str. F0262]
gi|291417851|gb|EFE91570.1| alanine racemase [Oribacterium sp. oral taxon 078 str. F0262]
Length = 429
Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 27/146 (18%), Positives = 44/146 (30%), Gaps = 34/146 (23%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ--TKDFVILCRQKYQLN 156
V A LS + +++ V+TG + GI + + + + L
Sbjct: 136 AVFLLSQAKALSKAAGEAGCTALLHLAVDTGM--GRIGIASEEEGSAELALSIAALPNLK 193
Query: 157 VEGLMCIPPAMGNPKPHFYLL-SEIAREC--KLTK-----------------LSMGMTRD 196
VEG+ F L E R KL++ S+G D
Sbjct: 194 VEGIFTHFSTADETDKEFSFLQRERFRRFCEKLSERGLSIPIRHCANSAGIIASIGTDFD 253
Query: 197 FELAIASGATSVRIGSGIFGERPCQT 222
VR G ++G P +
Sbjct: 254 ----------MVRDGIALYGIYPSRA 269
>gi|283469362|emb|CAQ48573.1| pyridoxal-dependent decarboxylase decarboxylase [Staphylococcus
aureus subsp. aureus ST398]
Length = 400
Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 16/115 (13%)
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSL-FDVIETVSREKTASLLSLEMIKQ 116
Q K + + + F G ++++ + VS I V L+ + +
Sbjct: 73 QGEIAKGLAFKPANHII--FGGPGKTDEELRYAVSEGVQRIH-VESMHELQRLNAILEDE 129
Query: 117 SRFLPVYIQVNT-----------GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ + ++VN + GI ++ D + ++++G
Sbjct: 130 DKTQHILLRVNLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALAMPNIHLDGF 184
>gi|283767867|ref|ZP_06340782.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
H19]
gi|283461746|gb|EFC08830.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
H19]
Length = 400
Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 16/115 (13%)
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSL-FDVIETVSREKTASLLSLEMIKQ 116
Q K + + + F G ++++ + VS I V L+ + +
Sbjct: 73 QGEIAKGLAFKPANHII--FGGPGKTDEELRYAVSEGVQRIH-VESMHELQRLNAILEDE 129
Query: 117 SRFLPVYIQVNT-----------GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ + ++VN + GI ++ D + ++++G
Sbjct: 130 DKTQHILLRVNLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALAMPNIHLDGF 184
>gi|282915455|ref|ZP_06323227.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
D139]
gi|282320558|gb|EFB50896.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
D139]
Length = 400
Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 16/115 (13%)
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSL-FDVIETVSREKTASLLSLEMIKQ 116
Q K + + + F G ++++ + VS I V L+ + +
Sbjct: 73 QGEIAKGLAFKPANHII--FGGPGKTDEELRYAVSEGVQRIH-VESMHELQRLNAILEDE 129
Query: 117 SRFLPVYIQVNT-----------GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ + ++VN + GI ++ D + ++++G
Sbjct: 130 DKTQHILLRVNLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALAMPNIHLDGF 184
>gi|253730474|ref|ZP_04864639.1| diaminopimelate decarboxylase protein [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253725804|gb|EES94533.1| diaminopimelate decarboxylase protein [Staphylococcus aureus subsp.
aureus USA300_TCH959]
Length = 400
Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 16/115 (13%)
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSL-FDVIETVSREKTASLLSLEMIKQ 116
Q K + + + F G ++++ + VS I V L+ + +
Sbjct: 73 QGEIAKGLAFKPANHII--FGGPGKTDEELRYAVSEGVQRIH-VESMHELQRLNAILEDE 129
Query: 117 SRFLPVYIQVNT-----------GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ + ++VN + GI ++ D + ++++G
Sbjct: 130 DKTQHILLRVNLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALAMPNIHLDGF 184
>gi|21281825|ref|NP_644911.1| hypothetical protein MW0096 [Staphylococcus aureus subsp. aureus
MW2]
gi|49485000|ref|YP_042221.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus MSSA476]
gi|297209376|ref|ZP_06925774.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|300911376|ref|ZP_07128825.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
TCH70]
gi|21203260|dbj|BAB93961.1| putative diaminopimelate decarboxylase [Staphylococcus aureus
subsp. aureus MW2]
gi|49243443|emb|CAG41864.1| pyridoxal-dependent decarboxylase decarboxylase [Staphylococcus
aureus subsp. aureus MSSA476]
gi|296885837|gb|EFH24772.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|300887555|gb|EFK82751.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
TCH70]
Length = 400
Score = 43.5 bits (102), Expect = 0.020, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 16/115 (13%)
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSL-FDVIETVSREKTASLLSLEMIKQ 116
Q K + + + F G ++++ + VS I V L+ + +
Sbjct: 73 QGEIAKGLAFKPANHII--FGGPGKTDEELRYAVSEGVQRIH-VESMHELQRLNAILEDE 129
Query: 117 SRFLPVYIQVNT-----------GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ + ++VN + GI ++ D + ++++G
Sbjct: 130 DKTQHILLRVNLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALAMPNIHLDGF 184
>gi|325914562|ref|ZP_08176905.1| diaminopimelate decarboxylase [Xanthomonas vesicatoria ATCC 35937]
gi|325539213|gb|EGD10866.1| diaminopimelate decarboxylase [Xanthomonas vesicatoria ATCC 35937]
Length = 398
Score = 43.5 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 14/87 (16%)
Query: 87 VSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQ 133
+++ +L D + V + L+ + R +PV++++N G +
Sbjct: 107 LAQAAALPDCTVH-VESIRELQRLAAIAARAGRCVPVFLRMNIAVPGAQGTRLMMGGQPS 165
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGL 160
G+ P + L R L +EG
Sbjct: 166 PFGLDPQDLDAAMHLLRVSPSLRLEGF 192
>gi|323692158|ref|ZP_08106401.1| hypothetical protein HMPREF9475_01264 [Clostridium symbiosum
WAL-14673]
gi|323503732|gb|EGB19551.1| hypothetical protein HMPREF9475_01264 [Clostridium symbiosum
WAL-14673]
Length = 369
Score = 43.5 bits (102), Expect = 0.022, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 6/133 (4%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
+G + N + V ++I V R + A+LLS + R V+I+++TG + + G+
Sbjct: 85 LGGVPVNNLPYAVQE-NLILPVFRTQDAALLSALAQENGRTARVHIKIDTG--LGRIGVE 141
Query: 139 PNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-EIARECKLTKLSMGMTRD 196
+ ++ + L +EG+ P F + E + G+
Sbjct: 142 KGEQLEELLDGILPLKGLEIEGVFTHFGEAEVTDPEFTEIQISRFEEALGQIRARGIQPR 201
Query: 197 FELAIASGATSVR 209
+ A + +T VR
Sbjct: 202 YIHATNTPST-VR 213
>gi|296532599|ref|ZP_06895304.1| alanine racemase domain protein [Roseomonas cervicalis ATCC 49957]
gi|296267090|gb|EFH13010.1| alanine racemase domain protein [Roseomonas cervicalis ATCC 49957]
Length = 352
Score = 43.5 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 9/124 (7%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM-PNQTKDFVILCRQKYQLNVE 158
+ ++ + ++ + + ++ ++G ++G+M + + R L +
Sbjct: 107 LDNAQSLATVAEAARLSGAEIGILVEFDSG--TARTGVMTIEELLELARAARATPGLRFD 164
Query: 159 GLMCIPPAMGNPKPHF---YLLSEIARECKLTKLSMGMTRD-FELAIASGATSVRIGSGI 214
G+M P +G F L A + +S G T FE A+ T +R+G+ I
Sbjct: 165 GVMTYP--LGPKARAFLDAALPRLKAEGLEPAVISGGGTPKAFEAHAAAPITELRVGTYI 222
Query: 215 FGER 218
+ +R
Sbjct: 223 YNDR 226
>gi|315426064|dbj|BAJ47711.1| alanine racemase domain protein [Candidatus Caldiarchaeum
subterraneum]
Length = 366
Score = 43.5 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 33/160 (20%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
++ + V + S L + + VY+ V+ G ++G+ P +
Sbjct: 102 KLAEKVKLSVAVDDVENVSELGRFCRENGVEVGVYVDVDCGM--HRTGVPPEKAWLLAEK 159
Query: 149 CRQKYQLNVEGLMCIPPAMGNP--KPHFYLL-----------SEIARECKLT--KLSMG- 192
+ + + GLM G+P + + L +++ + + ++SMG
Sbjct: 160 VTRTEGVYLVGLMGYEGHAGSPTSREERHKLIEEAVKATLHAAKLMKNNGIEPGEVSMGS 219
Query: 193 -----MTRDFELAIASGATSVRIGSGIFG-----ERPCQT 222
++ +E G T ++ G +F ER T
Sbjct: 220 SATVRVSGRYE-----GVTELQPGMYVFNDWYLVEREAAT 254
>gi|126666600|ref|ZP_01737578.1| diaminopimelate decarboxylase [Marinobacter sp. ELB17]
gi|126628988|gb|EAZ99607.1| diaminopimelate decarboxylase [Marinobacter sp. ELB17]
Length = 416
Score = 43.5 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + L+ + PV ++VN + K GI
Sbjct: 124 VESDIELDRLNAIAGELGVKAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIEVAPAIYA 183
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L+V G L + P + L+ ++A + ++ L +G
Sbjct: 184 RAASLPHLDVRGVDCHIGSQLTTVAPFLDALDRVLALVDKLAEQGVEIKHLDLG 237
>gi|237748340|ref|ZP_04578820.1| amino acid racemase [Oxalobacter formigenes OXCC13]
gi|229379702|gb|EEO29793.1| amino acid racemase [Oxalobacter formigenes OXCC13]
Length = 357
Score = 43.5 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 15/123 (12%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP 165
LS E +Q + V I + G + G++ + +++ G+
Sbjct: 103 LEKLSAEASRQGKVHQVIIMIELG--ELREGVLRDDVLPIYEKTLTLPHIDIVGVGTNLS 160
Query: 166 AMGNPKPHFYLLSEIA--REC-------KLTKLSMGMTRDFEL----AIASGATSVRIGS 212
+ P + L+++ R+ + +S G + L + +G RIG
Sbjct: 161 CLSGILPDYDKLNQLCLYRDLLHAKFGKAIPYVSGGTSVTIPLLTDKVVPAGINHFRIGE 220
Query: 213 GIF 215
+F
Sbjct: 221 TLF 223
>gi|123441390|ref|YP_001005377.1| hypothetical protein YE1043 [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122088351|emb|CAL11142.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 389
Score = 43.5 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 79 IGSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE---- 131
IG L Q S ++EI+ + TV + A +S +Q P+ ++V +
Sbjct: 107 IGHLVQPPSGMLAEIIRQRPEVITVFSLEKALEISQTAHRQHIIQPLMLKVCQSGDLLYS 166
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171
Q++G N + R+ + + G+ P + +P+
Sbjct: 167 GQEAGFELNHLPAVIAALREMPGVRLIGITHFPCMVYDPQ 206
>gi|22294181|dbj|BAC08012.1| alanine racemase [Thermosynechococcus elongatus BP-1]
Length = 412
Score = 43.5 bits (102), Expect = 0.024, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 12/133 (9%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
T+S K A + S + L V++ ++TG + G FV ++ L ++
Sbjct: 142 TLSTPKQALIFSDYADRLREPLDVHLMIDTGM--SRLGCPWQDAVGFVQFVQRLPHLRIQ 199
Query: 159 GLMCIPPAMGNP-----KPHFYLLSEIARECKLTKLSMGMTRDFELA--IASGAT---SV 208
G+ + +P + ++ + L A +A+ ++ V
Sbjct: 200 GIYSHFASADDPDASLMRQQQAYFEQVWEQISALGLGPVRRHMANSAATLANRSSHYDMV 259
Query: 209 RIGSGIFGERPCQ 221
RIG ++G P
Sbjct: 260 RIGLSLYGVYPAS 272
>gi|315425297|dbj|BAJ46964.1| alanine racemase domain protein [Candidatus Caldiarchaeum
subterraneum]
Length = 360
Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 33/160 (20%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
++ + V + S L + + VY+ V+ G ++G+ P +
Sbjct: 96 KLAEKVKLSVAVDDVENVSELGRFCRENGVEVGVYVDVDCGM--HRTGVPPEKAWLLAEK 153
Query: 149 CRQKYQLNVEGLMCIPPAMGNP--KPHFYLL-----------SEIARECKLT--KLSMG- 192
+ + + GLM G+P + + L +++ + + ++SMG
Sbjct: 154 VTRTEGVYLVGLMGYEGHAGSPTSREERHKLIEEAVKATLHAAKLMKNNGIEPGEVSMGS 213
Query: 193 -----MTRDFELAIASGATSVRIGSGIFG-----ERPCQT 222
++ +E G T ++ G +F ER T
Sbjct: 214 SATVRVSGRYE-----GVTELQPGMYVFNDWYLVEREAAT 248
>gi|170289049|ref|YP_001739287.1| alanine racemase domain-containing protein [Thermotoga sp. RQ2]
gi|170176552|gb|ACB09604.1| alanine racemase domain protein [Thermotoga sp. RQ2]
Length = 353
Score = 43.1 bits (101), Expect = 0.025, Method: Composition-based stats.
Identities = 42/228 (18%), Positives = 79/228 (34%), Gaps = 34/228 (14%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKK---IRVALSCGQVIFAENKLQEAK 62
L+ ++ + +A R + +V V+K V G I E+++
Sbjct: 8 NLKEIEENAKKVVEMASR--RGIEIVGVTK-VTLGDPRFAETLRKAGIRILGESRI---- 60
Query: 63 KKWIPLRKEWDVQLRFI---GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + K+ ++ F+ + S V ++ FD I VS A + + R
Sbjct: 61 -KNVLRMKKAGIEGPFMLLRLPMMSELVEDV-RHFDYI-MVSDPDVAKKVDELSREIKRN 117
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN---PKPHFYL 176
+ + ++ G + G+ + V Q NV G+ G + F +
Sbjct: 118 VKIIYMIDVG--DLREGVWFEKA---VEEIAQCKGANVVGIGTNFGCYGGIIPTREKFEI 172
Query: 177 LSEIARECK------LTKLSMGMTRDFEL----AIASGATSVRIGSGI 214
L +I + + + +S G T I G +RIG I
Sbjct: 173 LLDIKEKLEKNYGFNIEIVSGGNTPALYALENDEIPEGINQLRIGEAI 220
>gi|293189600|ref|ZP_06608318.1| conserved hypothetical protein [Actinomyces odontolyticus F0309]
gi|292821441|gb|EFF80382.1| conserved hypothetical protein [Actinomyces odontolyticus F0309]
Length = 48
Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSC 48
MS+ + + +I+ + R DSV L K ++ R A +
Sbjct: 1 MSIPEAIATARDRIDRATSACGR-TDSVHLELAVKTRTPEECRAAAAA 47
>gi|161485772|ref|NP_681250.2| alanine racemase [Thermosynechococcus elongatus BP-1]
Length = 383
Score = 43.1 bits (101), Expect = 0.026, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 12/133 (9%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
T+S K A + S + L V++ ++TG + G FV ++ L ++
Sbjct: 113 TLSTPKQALIFSDYADRLREPLDVHLMIDTGM--SRLGCPWQDAVGFVQFVQRLPHLRIQ 170
Query: 159 GLMCIPPAMGNP-----KPHFYLLSEIARECKLTKLSMGMTRDFELA--IASGAT---SV 208
G+ + +P + ++ + L A +A+ ++ V
Sbjct: 171 GIYSHFASADDPDASLMRQQQAYFEQVWEQISALGLGPVRRHMANSAATLANRSSHYDMV 230
Query: 209 RIGSGIFGERPCQ 221
RIG ++G P
Sbjct: 231 RIGLSLYGVYPAS 243
>gi|33241130|ref|NP_876072.1| alanine racemase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|81835791|sp|Q7V9Z2|ALR_PROMA RecName: Full=Alanine racemase
gi|33238660|gb|AAQ00725.1| Alanine racemase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 386
Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 45/243 (18%), Positives = 87/243 (35%), Gaps = 43/243 (17%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVALSCG-QVIFAEN 56
++ + ++ + L+AV K S+ + A G
Sbjct: 25 AIKANTLAIRSLLDEQCL----------LMAVVKADGYGHGSETVAEAALAGGATNLGVA 74
Query: 57 KLQEAKKKWIPLRKEWDVQLRFI-GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
LQEA + LRK V + G+L + + + +D++ T+S + A L +
Sbjct: 75 TLQEALE----LRKAGIVCPILVLGNLINPEDLDACIHWDLMPTLSSAREALLCNQIAES 130
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL---MCIPPAMGN-PK 171
+ V+I+V+TG + G + + L L++ G+ + + N
Sbjct: 131 HDKEFCVHIKVDTGM--TRLGCDLRLASELIQLVDNLKNLSLRGIYSHLALADVEANGQA 188
Query: 172 PHFYLLSEIARECKLTK-LSMGM---TRDFE-LAIASGA--------TSVRIGSGIFGER 218
F ++ K LS M + LA ++G VR+G ++G
Sbjct: 189 NSFTS----KQKEKFETLLSSVMPRGKPLYRHLANSAGTLRDKGLHFDMVRVGLALYGYS 244
Query: 219 PCQ 221
P +
Sbjct: 245 PLK 247
>gi|238924324|ref|YP_002937840.1| alanine racemase [Eubacterium rectale ATCC 33656]
gi|238875999|gb|ACR75706.1| alanine racemase [Eubacterium rectale ATCC 33656]
Length = 376
Score = 43.1 bits (101), Expect = 0.027, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 23/134 (17%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKYQLNV 157
V +TA LS + +++ ++I+++TG + G ++ D + + + +
Sbjct: 103 AVCTYETAKELSRIAVAKNKTCKIHIKIDTGM--CRIGFQVTEESADIIAQIAKLPNIMI 160
Query: 158 EGLMCIPPAMGN--PKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT--------- 206
EG+ +P F R L + G+ E+ I +
Sbjct: 161 EGIFTHFARADELSKEPAFEQFDLFKRMIALVEA-RGV----EIPIKHCSNSAGIVEIPE 215
Query: 207 ----SVRIGSGIFG 216
VR G ++G
Sbjct: 216 CNMDMVRAGITLYG 229
>gi|206889591|ref|YP_002248188.1| alanine racemase [Thermodesulfovibrio yellowstonii DSM 11347]
gi|259710075|sp|B5YIM9|ALR_THEYD RecName: Full=Alanine racemase
gi|206741529|gb|ACI20586.1| alanine racemase [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 363
Score = 43.1 bits (101), Expect = 0.029, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 17/133 (12%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY 153
+++I + + A LS E ++ LPV+I+V TG + GI N + + Q
Sbjct: 96 YNLIPVIFDYRQAEFLSKEASRRGVILPVHIKVETGM--GRLGIYENPC-ETIKKIAQLD 152
Query: 154 QLNVEGLMCIPPAMGN---PKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATS--- 207
L ++G+M + + S+I ++GM F +A + G
Sbjct: 153 NLKIDGVMSHFSRAEDLEWTQEQMKKFSKIREFLH----NLGMKPLFHIANSQGLNYKEA 208
Query: 208 ----VRIGSGIFG 216
VR G ++G
Sbjct: 209 LFDAVRPGLMLYG 221
>gi|10952530|gb|AAG24954.1|AF242414_1 unknown [Paenibacillus alginolyticus]
Length = 226
Score = 43.1 bits (101), Expect = 0.029, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 86 KVSEIVSLFDVIETV---SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
K+ V L IE + A LL + L V ++++TG ++++G+
Sbjct: 91 KIERAVRLSQQIELIVGMDSLAGAQLLEETAARLGATLQVRLEIDTG--LRRTGVGFESA 148
Query: 143 KDFVILCRQKYQLNVEGLMCI 163
+ + L + G+
Sbjct: 149 LEVADEIARLPHLRLTGIYTF 169
>gi|83747080|ref|ZP_00944124.1| Ssd [Ralstonia solanacearum UW551]
gi|207739670|ref|YP_002258063.1| staphyloferrin b siderophore synthesis decarboxylase protein
[Ralstonia solanacearum IPO1609]
gi|83726210|gb|EAP73344.1| Ssd [Ralstonia solanacearum UW551]
gi|206593052|emb|CAQ59958.1| staphyloferrin b siderophore synthesis decarboxylase protein
[Ralstonia solanacearum IPO1609]
Length = 413
Score = 43.1 bits (101), Expect = 0.029, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 29/132 (21%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------------TGY 130
+ ++I V E L + R V ++VN G
Sbjct: 102 ALERGVELIH-VESELQLRRLDAVACRMGRRARVLLRVNPNPLSADSAGKRPQGTLTMGG 160
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGL--------MCIPPAMGNPKPHFYLLSEIAR 182
+ + GI + D + L R + V GL + + + + L + R
Sbjct: 161 QPTQFGIEEDAVPDLIRLARGLPGVEVVGLHLHALSNNLDADSHLALIRHYLALALRLRR 220
Query: 183 ECK--LTKLSMG 192
E L L++G
Sbjct: 221 EHGLTLDTLNVG 232
>gi|302331871|gb|ADL22064.1| pyridoxal-dependent decarboxylase decarboxylase [Staphylococcus
aureus subsp. aureus JKD6159]
Length = 400
Score = 43.1 bits (101), Expect = 0.029, Method: Composition-based stats.
Identities = 14/115 (12%), Positives = 39/115 (33%), Gaps = 16/115 (13%)
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSL-FDVIETVSREKTASLLSLEMIKQ 116
Q K + + + F G ++++ + VS I V L+ + +
Sbjct: 73 QGEIAKGLAFKPTNHII--FGGPGKTDEELRYAVSEGVQRIH-VESMHELQRLNAILEDE 129
Query: 117 SRFLPVYIQVNT-----------GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ + ++VN + GI ++ + + +++++G
Sbjct: 130 DKTQHILLRVNLAGPFPNATLHMAGRPTQFGISEDEVDEVIEAALAMPKIHLDGF 184
>gi|323440347|gb|EGA98060.1| diaminopimelate decarboxylase protein [Staphylococcus aureus O11]
gi|323443170|gb|EGB00789.1| diaminopimelate decarboxylase protein [Staphylococcus aureus O46]
Length = 400
Score = 43.1 bits (101), Expect = 0.029, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 16/115 (13%)
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSL-FDVIETVSREKTASLLSLEMIKQ 116
Q K + + + F G ++++ + VS I V L+ + +
Sbjct: 73 QGEIAKGLAFKPANHII--FGGPGKTDEELRYAVSEGVQRIH-VESMHELQRLNAILEDE 129
Query: 117 SRFLPVYIQVNT-----------GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ + ++VN + GI ++ D + ++++G
Sbjct: 130 DKTQHILLRVNLAGPFPNATLHMAGRPTQFGISEDEVDDVIEATLAMPNIHLDGF 184
>gi|119715651|ref|YP_922616.1| alanine racemase domain-containing protein [Nocardioides sp. JS614]
gi|119536312|gb|ABL80929.1| alanine racemase domain protein [Nocardioides sp. JS614]
Length = 386
Score = 43.1 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 30/134 (22%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ AS S + R + V I++++G ++G+ P Q + + L V G+
Sbjct: 133 DSVEVASGYSDLACRTGREIAVLIEIDSGMR--RAGVPPEQAGAVAVEVDRLPGLRVRGI 190
Query: 161 MC-------------IPPAMGNPKPHFYLLSEIARECKLT--KLSMG-------MTRDFE 198
+ I + E +T +S G ++ D
Sbjct: 191 LTHAGHSHAALDQRGIEEVARDEVRAMQQARETVERAGVTVEVVSAGSTITTPYLSSD-- 248
Query: 199 LAIASGATSVRIGS 212
G T VR G+
Sbjct: 249 ----DGITEVRPGT 258
>gi|160947411|ref|ZP_02094578.1| hypothetical protein PEPMIC_01345 [Parvimonas micra ATCC 33270]
gi|158446545|gb|EDP23540.1| hypothetical protein PEPMIC_01345 [Parvimonas micra ATCC 33270]
Length = 393
Score = 43.1 bits (101), Expect = 0.030, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 55/143 (38%), Gaps = 16/143 (11%)
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFV 146
I + D+ TV + L+ K + ++I+++TG + G + + KD++
Sbjct: 92 KLIKNNVDL--TVYNIEMIRELNEISAKCRKKCKIHIKIDTGM--NRLGFLIDDKLKDYL 147
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS-EIARECK--LTKLSMGMTRDFELAIAS 203
+ V+G+ F L E + K L + ++ + +A
Sbjct: 148 KEIYSMKHIIVKGMFSHLCVSDIDDFSFTKLQVERFEKVKHILEEENLKI-PMLHIANDG 206
Query: 204 GA-------TSVRIGSGIFGERP 219
GA VR+G GI+G P
Sbjct: 207 GALLHDYYYDMVRVGIGIYGHYP 229
>gi|228907651|ref|ZP_04071508.1| Alanine racemase [Bacillus thuringiensis IBL 200]
gi|228852143|gb|EEM96940.1| Alanine racemase [Bacillus thuringiensis IBL 200]
Length = 340
Score = 43.1 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 73/209 (34%), Gaps = 44/209 (21%)
Query: 33 VSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS 92
VSK A++ G A + ++ + + + +G + + +V
Sbjct: 16 VSK--------KAINSGVDYLA---VASLEEAIKLRKSDIQAPILMLGYTPPSAANHVV- 63
Query: 93 LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK 152
+D+ +++ + A LS + V+++V+TG + G+ + DF+ + +
Sbjct: 64 YWDLTQSIFDIEHAEALSKSGQILGKKAKVHVKVDTGM--GRLGLQAEEANDFIHIVSRM 121
Query: 153 YQLNVEGLMCIPPAMGNPKPHF---------YLLSEIARE----------CKLTKLSM-G 192
L +EG+ + LL E+ + + M
Sbjct: 122 DGLYLEGVYSHFATADEADKRYAEKQKNRWKRLLEELEKRKVSIPLFHIANSAATIEMPD 181
Query: 193 MTRDFELAIASGATSVRIGSGIFGERPCQ 221
MT D VRIG ++G P +
Sbjct: 182 MTYD----------MVRIGISMYGLYPSK 200
>gi|288573583|ref|ZP_06391940.1| alanine racemase domain protein [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288569324|gb|EFC90881.1| alanine racemase domain protein [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 353
Score = 42.7 bits (100), Expect = 0.032, Method: Composition-based stats.
Identities = 45/226 (19%), Positives = 79/226 (34%), Gaps = 34/226 (15%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSK-MVDSKKIRVA-LSCGQVIFAENKLQEA 61
KL+ K+ + + AVSK +I G A+++L E
Sbjct: 10 REKLKENTSKLAKECHDRG-----IKVAAVSKVYCGMPEIASVQAESGVDWIADSRL-EN 63
Query: 62 KKKWIPLR-KEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLEMIKQSR 118
K + + ++L I ++ E V L D+ + V LS + +
Sbjct: 64 LAKMRDIDIPKILLRLPMI-----SQARETVELADMSFVSEVDT---CRALSKAAVAMKK 115
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG----LMCIPPAMGNPKPHF 174
V + V+ G + G+ P++ D L ++G L C + +P+
Sbjct: 116 EHQVLLMVDVG--DLREGVWPDRAVDTAREIASMPGLILKGIGTNLSCYGAVLPSPENLG 173
Query: 175 YLLS---EIARECK--LTKLSMGMTRDFEL----AIASGATSVRIG 211
L+S I EC L +S G + L I +R+G
Sbjct: 174 QLVSVADSIESECGIHLDIVSGGNSSSIRLLLSGGIPERINMLRLG 219
>gi|291529405|emb|CBK94991.1| alanine racemase [Eubacterium rectale M104/1]
Length = 376
Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 23/134 (17%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKYQLNV 157
V +TA LS + +++ ++I+++TG + G ++ D + + + +
Sbjct: 103 AVCTYETAKELSRIAVAKNKTCKIHIKIDTGM--CRIGFQVTEESADIIAQIAKLPNIMI 160
Query: 158 EGLMCIPPAMGN--PKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT--------- 206
EG+ +P F R L + E+ I +
Sbjct: 161 EGIFTHFARADELSKEPAFEQFDLFKRMIALVEAREV-----EIPIKHCSNSAGIVEIPE 215
Query: 207 ----SVRIGSGIFG 216
VR G ++G
Sbjct: 216 CNMDMVRAGITLYG 229
>gi|291525106|emb|CBK90693.1| alanine racemase [Eubacterium rectale DSM 17629]
Length = 376
Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 23/134 (17%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKYQLNV 157
V +TA LS + +++ ++I+++TG + G ++ D + + + +
Sbjct: 103 AVCTYETAKELSRIAVAKNKTCKIHIKIDTGM--CRIGFQVTEESADIIAQIAKLPNIMI 160
Query: 158 EGLMCIPPAMGN--PKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT--------- 206
EG+ +P F R L + E+ I +
Sbjct: 161 EGIFTHFARADELSKEPAFEQFDLFKRMIALVEAREV-----EIPIKHCSNSAGIVEIPE 215
Query: 207 ----SVRIGSGIFG 216
VR G ++G
Sbjct: 216 CNMDMVRAGITLYG 229
>gi|157148963|ref|YP_001456282.1| hypothetical protein CKO_04801 [Citrobacter koseri ATCC BAA-895]
gi|157086168|gb|ABV15846.1| hypothetical protein CKO_04801 [Citrobacter koseri ATCC BAA-895]
Length = 387
Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 53/126 (42%), Gaps = 14/126 (11%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q S ++ E V + T+ + A +S +K R V +++ +
Sbjct: 103 GHLVQIPSRQIGEAVEQGTDVITLFSLEKAREVSAAAVKAGRVQAVMLKIYGEQDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIARECK 185
Q+SG + D V R+ L+V GL P + + P P+ + L + ++ +
Sbjct: 163 QESGFPLARLDDAVNDIRRLPGLHVTGLTHFPCLLWDDASGETRPTPNLHSLVKARQQLE 222
Query: 186 LTKLSM 191
++++
Sbjct: 223 EQEIAI 228
>gi|220932749|ref|YP_002509657.1| alanine racemase domain protein [Halothermothrix orenii H 168]
gi|219994059|gb|ACL70662.1| alanine racemase domain protein [Halothermothrix orenii H 168]
Length = 357
Score = 42.7 bits (100), Expect = 0.033, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 15/121 (12%)
Query: 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA 166
LS E IK +R + + V+ G + G++P +F +N++GL
Sbjct: 106 EALSREAIKVNRSHDIIVMVDVG--DLREGVLPEDISEFFGKIIDLPGINIKGLGTNVGC 163
Query: 167 MGNPKPHFY---LLSEIARE------CKLTKLSMGMTR-DFEL---AIASGATSVRIGSG 213
G P + LL E+ + L +S G + + L + SG ++R+G G
Sbjct: 164 YGGVLPTYKNTNLLIELKEKMEVKYGVHLPVISGGNSATTYLLDRNELPSGVNNLRVGEG 223
Query: 214 I 214
I
Sbjct: 224 I 224
>gi|307265382|ref|ZP_07546939.1| alanine racemase domain protein [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306919666|gb|EFN49883.1| alanine racemase domain protein [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 373
Score = 42.7 bits (100), Expect = 0.035, Method: Composition-based stats.
Identities = 10/78 (12%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
+ VI + + A+ + + + I +++G + + G++P + +
Sbjct: 98 LAQKAHVILSFDGVEAAAKVEETCNRIGLSMDYLIIIDSG--LHRFGVVPEKVLELAEKL 155
Query: 150 RQKYQLNVEGLMCIPPAM 167
+ L +G+ P
Sbjct: 156 KSFTHLKFKGIATHPGHT 173
>gi|238892925|ref|YP_002917659.1| hypothetical protein KP1_0750 [Klebsiella pneumoniae NTUH-K2044]
gi|238545241|dbj|BAH61592.1| hypothetical protein KP1_0750 [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 406
Score = 42.7 bits (100), Expect = 0.035, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 3/76 (3%)
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKD 144
++ D I V E LS Q + L V I+ G + G +
Sbjct: 117 QLKAHYRAVDFICCVDSEVNVRALSAFFADQGQTLDVLIE--LGVPGGRCGCRSVDDALA 174
Query: 145 FVILCRQKYQLNVEGL 160
L + GL
Sbjct: 175 LAQRVSDLPGLRLRGL 190
>gi|330007025|ref|ZP_08305857.1| hypothetical protein HMPREF9538_03546 [Klebsiella sp. MS 92-3]
gi|328535564|gb|EGF62019.1| hypothetical protein HMPREF9538_03546 [Klebsiella sp. MS 92-3]
Length = 406
Score = 42.7 bits (100), Expect = 0.035, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 3/76 (3%)
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKD 144
++ D I V E LS Q + L V I+ G + G +
Sbjct: 117 QLKAHYRAVDFICCVDSEVNVRALSAFFADQGQTLDVLIE--LGVPGGRCGCRSVDDALA 174
Query: 145 FVILCRQKYQLNVEGL 160
L + GL
Sbjct: 175 LAQRVSDLPGLRLRGL 190
>gi|315453697|ref|YP_004073967.1| alanine racemase [Helicobacter felis ATCC 49179]
gi|315132749|emb|CBY83377.1| alanine racemase [Helicobacter felis ATCC 49179]
Length = 378
Score = 42.7 bits (100), Expect = 0.037, Method: Composition-based stats.
Identities = 35/168 (20%), Positives = 58/168 (34%), Gaps = 13/168 (7%)
Query: 63 KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPV 122
+ + LR + I N +++ + ++ +T+ EK A S +K R L V
Sbjct: 67 DEALELRARFAQVPILILGFTPNHMAQELIQANITQTLFCEKQARYFSDAALKLGRKLKV 126
Query: 123 YIQVNTGYEIQKSGIMPNQTKDFVIL-CRQKYQLNVEGLMCIPPAMGN-----PKPHFYL 176
+I+V+TG + G P Q I Q L +EG+ +
Sbjct: 127 HIKVDTGM--SRLGFFPTQQSAIAIAKIAQLKGLELEGIFTHHSNADALYKNYAQEQATR 184
Query: 177 LSEIARECKLTKLSMGMTRDFELAIA-----SGATSVRIGSGIFGERP 219
E + + L A A G RIG ++G P
Sbjct: 185 FIEFLEQLRRMGLEFKYQHMANSACALSMPSFGMNMARIGLALYGLHP 232
>gi|146275923|ref|YP_001166083.1| alanine racemase domain-containing protein [Novosphingobium
aromaticivorans DSM 12444]
gi|145322614|gb|ABP64557.1| alanine racemase domain protein [Novosphingobium aromaticivorans
DSM 12444]
Length = 393
Score = 42.7 bits (100), Expect = 0.037, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 56/151 (37%), Gaps = 23/151 (15%)
Query: 86 KVSEIVSL----FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
K+++++ L D+ + + A ++ + +P I+++ +SG++P
Sbjct: 105 KLAKVIELRKRGVDLAVVLDTVELAQAVAAASRESGMAIPALIEIDCDG--HRSGVLPRD 162
Query: 142 TKDFVILCRQK-YQLNVEGLMCIPP-------------AMGNPKPHFYLLSEIARECKL- 186
++ + + + + G++ A + + I R+ L
Sbjct: 163 SERLLAIGKALVEGGELRGVLTHAGGSYAARGEEALRNAAEEERASVVNAAAILRDAGLP 222
Query: 187 -TKLSMGMTRDFELAIAS-GATSVRIGSGIF 215
+S+G T A G T VR G +F
Sbjct: 223 CPVVSVGSTPTAHHATDLTGVTEVRAGVFVF 253
>gi|220930291|ref|YP_002507200.1| alanine racemase [Clostridium cellulolyticum H10]
gi|220000619|gb|ACL77220.1| alanine racemase [Clostridium cellulolyticum H10]
Length = 389
Score = 42.7 bits (100), Expect = 0.037, Method: Composition-based stats.
Identities = 44/251 (17%), Positives = 89/251 (35%), Gaps = 62/251 (24%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFA----EN- 56
++ + ++ + + + + ++ V K A G + A EN
Sbjct: 16 NIAHNIREIR-------KITGKNAE---IMGVVK-------ADAYGHGVMEVAKTLLENG 58
Query: 57 --K--LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
+ + + R +V + +G + +EI+ DV ++V A LS E
Sbjct: 59 ASRFAVSMLDEAIQLRRAGIEVPILILGYTDPIRANEIIEN-DVTQSVFSHDLAQALSDE 117
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
++Q + + ++I+++TG + + G +P + K+ V + +EGL
Sbjct: 118 AVRQGKKVKIHIKIDTG--MSRIGFLPGYSAVKNVVD-ISTLPNIIIEGLFT-------- 166
Query: 171 KPHFYLLSEIARECKLTKLSMGMTRDFEL-------AIASGAT-------------SVRI 210
HF E R+ T+ M+ EL + A VR
Sbjct: 167 --HFATADEKNRDYTYTQFERFMSICCELQRIGIHIPVKHCANSAAVIEYPEMHLDMVRP 224
Query: 211 GSGIFGERPCQ 221
G ++G P
Sbjct: 225 GIILYGMYPSS 235
>gi|160941188|ref|ZP_02088525.1| hypothetical protein CLOBOL_06081 [Clostridium bolteae ATCC
BAA-613]
gi|158435749|gb|EDP13516.1| hypothetical protein CLOBOL_06081 [Clostridium bolteae ATCC
BAA-613]
Length = 392
Score = 42.7 bits (100), Expect = 0.037, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 84 SNKVSEIVSLF---DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
SN + E+ L+ +I T+ E+ A +S +PV+++++TG + G+
Sbjct: 89 SNTIEEVAELYIQYHLIPTILSEREAKAISDAASS---PVPVFVKIDTGR--GRLGVNAE 143
Query: 141 QTKDFVILCRQKYQLNVEGL 160
+ DF L VEG+
Sbjct: 144 EFPDFYRKITALPNLYVEGV 163
>gi|91791946|ref|YP_561597.1| Orn/DAP/Arg decarboxylase 2 [Shewanella denitrificans OS217]
gi|91713948|gb|ABE53874.1| Orn/DAP/Arg decarboxylase 2 [Shewanella denitrificans OS217]
Length = 405
Score = 42.7 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 41/139 (29%), Gaps = 24/139 (17%)
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+K + + + G + + + + E + L+ +Q++ +
Sbjct: 76 IEKVRAISQNVPIAFGGPGKTITELTRALTLNVQLYH-LESELQLARLNQLAKEQNQLVR 134
Query: 122 VYIQVN-----------TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
++VN + + GI + + + VEGL
Sbjct: 135 CLLRVNPYFDLPSATLQMAGQATQFGIDERELLALLPRLGDYPNIQVEGL---------- 184
Query: 171 KPHFYLLSEIARECKLTKL 189
HF+ LS K L
Sbjct: 185 --HFHCLSNNLDAVKHVTL 201
>gi|294849057|ref|ZP_06789801.1| siderophore staphylobactin biosynthesis protein SbnH
[Staphylococcus aureus A9754]
gi|294823949|gb|EFG40374.1| siderophore staphylobactin biosynthesis protein SbnH
[Staphylococcus aureus A9754]
Length = 400
Score = 42.7 bits (100), Expect = 0.038, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 39/115 (33%), Gaps = 16/115 (13%)
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSL-FDVIETVSREKTASLLSLEMIKQ 116
Q K + + + F G ++++ + VS I V L+ + +
Sbjct: 73 QGEIAKGLAFKPANHII--FGGPSKTDEELRYAVSEGVQRIH-VESMHELQRLNAILEDE 129
Query: 117 SRFLPVYIQVNT-----------GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ + ++VN + GI ++ D + +++++G
Sbjct: 130 DKTQHILLRVNLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALAMPKIHLDGF 184
>gi|85714753|ref|ZP_01045740.1| probable diaminopimelate decarboxylase protein [Nitrobacter sp.
Nb-311A]
gi|85698638|gb|EAQ36508.1| probable diaminopimelate decarboxylase protein [Nitrobacter sp.
Nb-311A]
Length = 392
Score = 42.7 bits (100), Expect = 0.039, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 12/76 (15%)
Query: 96 VIETVSREKTASLLSLEMIKQSRFLPVYIQVN-----------TGYEIQKSGIMPNQTKD 144
+I V E L ++++ + ++VN G + + GI Q
Sbjct: 109 LIH-VESEHQLRRLDWIARRRNQRADILLRVNPASVPQQATLRMGGQATQFGIEEAQIPA 167
Query: 145 FVILCRQKYQLNVEGL 160
+ L + + GL
Sbjct: 168 LIELALGLPGVRLRGL 183
>gi|325295168|ref|YP_004281682.1| Alanine racemase [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065616|gb|ADY73623.1| Alanine racemase [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 353
Score = 42.7 bits (100), Expect = 0.040, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 11/131 (8%)
Query: 98 ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNV 157
E V T + E +K + L + V + + G + N+ + + + V
Sbjct: 90 EAVDYRLTPVIFDFEGLKLVKELDIPFHVKIDTGMGRLGFLENEWNELL---SELKYSKV 146
Query: 158 EGLMC-IPPAMGN---PKPHFYLLSEIARECKL--TKLSMGMTRDFELAIASGA--TSVR 209
EG+M A + K F A E K ++ + + + I + T R
Sbjct: 147 EGIMSHFSSADEDLDFTKEQFKKFYSFASELKQLKPEIKIHIDNSAAIPIKFDSILTHCR 206
Query: 210 IGSGIFGERPC 220
+G ++G +P
Sbjct: 207 VGIALYGSKPY 217
>gi|77919828|ref|YP_357643.1| alanine racemase [Pelobacter carbinolicus DSM 2380]
gi|77545911|gb|ABA89473.1| alanine racemase [Pelobacter carbinolicus DSM 2380]
Length = 378
Score = 42.7 bits (100), Expect = 0.040, Method: Composition-based stats.
Identities = 36/197 (18%), Positives = 63/197 (31%), Gaps = 15/197 (7%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVALS-CGQVIFAENKLQEA 61
L+ K + LA P V +AV K + + +AL G +F ++E
Sbjct: 16 LEALKHNFYQAQRLAG-PGQGV--LAVVKADAYGHGAAHVAMALQGVGVEMFGVAIVEEG 72
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ L G L + ++ ++ T+ A L LP
Sbjct: 73 VALREAGVVCPILVL---GGLYPGQEENLLRY-GLVPTLFDMDVARRLDSCARAAGVVLP 128
Query: 122 VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEI 180
+++V+TG + G P+ + L ++GL + A EI
Sbjct: 129 YHMKVDTGM--SRVGFRPDDLPRVLEELGALSGLRMDGLFSHLAMADEPENTVNQKQLEI 186
Query: 181 ARECKLTKLSMGMTRDF 197
R C G +
Sbjct: 187 FRGCLDRVRQAGFAPRY 203
>gi|28899758|ref|NP_799363.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus RIMD
2210633]
gi|153838760|ref|ZP_01991427.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus AQ3810]
gi|260365174|ref|ZP_05777739.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus K5030]
gi|260878126|ref|ZP_05890481.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus AN-5034]
gi|260895817|ref|ZP_05904313.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus Peru-466]
gi|260900850|ref|ZP_05909245.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus AQ4037]
gi|28808010|dbj|BAC61247.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus RIMD
2210633]
gi|149747846|gb|EDM58730.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus AQ3810]
gi|308087170|gb|EFO36865.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus Peru-466]
gi|308092764|gb|EFO42459.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus AN-5034]
gi|308110594|gb|EFO48134.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus AQ4037]
gi|308111029|gb|EFO48569.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus K5030]
gi|328472415|gb|EGF43281.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus 10329]
Length = 417
Score = 42.7 bits (100), Expect = 0.041, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++ +
Sbjct: 125 VESEPELERLNKVAGELGVIAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPEVYQ 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
+ LNV+G L I P + L+ ++ A+ + L +G
Sbjct: 185 FAQSLPNLNVQGIDCHIGSQLTSIDPFIDATDRLLALIDDLKAQGINIRHLDVG 238
>gi|148826629|ref|YP_001291382.1| diaminopimelate decarboxylase [Haemophilus influenzae PittEE]
gi|148716789|gb|ABQ98999.1| diaminopimelate decarboxylase [Haemophilus influenzae PittEE]
Length = 450
Score = 42.3 bits (99), Expect = 0.042, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 24/117 (20%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKD 144
+E+VS K ++ + + P+ ++VN + K G+ N+ ++
Sbjct: 124 VESVSELKH---INQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEARE 180
Query: 145 FVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ + L L +G
Sbjct: 181 VYKLASTLPNIKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLG 237
>gi|328951278|ref|YP_004368613.1| Alanine racemase [Marinithermus hydrothermalis DSM 14884]
gi|328451602|gb|AEB12503.1| Alanine racemase [Marinithermus hydrothermalis DSM 14884]
Length = 364
Score = 42.3 bits (99), Expect = 0.042, Method: Composition-based stats.
Identities = 29/185 (15%), Positives = 61/185 (32%), Gaps = 27/185 (14%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIR-VALSCGQVIFAEN 56
+L + L+V + +++ + ++AV K + I G FA
Sbjct: 12 ALAHNLRVIRARLQ---------PGT-GIIAVIKADAYGHGAVPIAHELARLGVERFAVA 61
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
++E + + +GSL + + + +I T+S + A ++
Sbjct: 62 TVEEG---ARLRQARIQHPVHLLGSLHPEEAAPALEHA-LIPTLSTLEAARAVAAHRPGA 117
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPHFY 175
+ + V + + G+ + FV L VEG+ A +P
Sbjct: 118 T------VHVKADSGMGRVGVPLEALRRFVEEVEAM-GLEVEGVFTHFASADEDPAATRR 170
Query: 176 LLSEI 180
L
Sbjct: 171 QLEAF 175
>gi|92118935|ref|YP_578664.1| diaminopimelate decarboxylase [Nitrobacter hamburgensis X14]
gi|91801829|gb|ABE64204.1| diaminopimelate decarboxylase [Nitrobacter hamburgensis X14]
Length = 421
Score = 42.3 bits (99), Expect = 0.042, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 16/104 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E LLS + R + I+VN TG K GI + +
Sbjct: 124 VESEPELDLLSKLASEAGRTARISIRVNPDVDSGTHAKISTGRSENKFGIPIARARAVYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGN---PKPHFYLLSEIARECKLT 187
+ + V G+ M I + + + F LL++ +
Sbjct: 184 HAAKLPGIAVTGVDMHIGSQITDLGPMEAAFRLLADFVTTLRAD 227
>gi|304380085|ref|ZP_07362806.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|304341321|gb|EFM07239.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
Length = 333
Score = 42.3 bits (99), Expect = 0.043, Method: Composition-based stats.
Identities = 9/83 (10%), Positives = 25/83 (30%), Gaps = 12/83 (14%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT-----------GYEIQKSGI 137
+ I V L+ + + + + ++VN + GI
Sbjct: 36 AVSEGVQRIH-VESMHELQRLNAILEDEDKTQHILLRVNLAGPFPNATLHMAGRPTQFGI 94
Query: 138 MPNQTKDFVILCRQKYQLNVEGL 160
++ D + ++++G
Sbjct: 95 SEDEVDDVIEAALAMPNIHLDGF 117
>gi|283788361|ref|YP_003368226.1| hypothetical protein ROD_48391 [Citrobacter rodentium ICC168]
gi|282951815|emb|CBG91525.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
Length = 406
Score = 42.3 bits (99), Expect = 0.043, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 6/100 (6%)
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM-PNQTKD 144
++ D I V + L+ ++ + L V I+ G E + G +
Sbjct: 117 QLKAHYPAADFICCVDSPENVRELAAFFAQRQQTLDVMIE--LGVEGGRCGCRGADAALT 174
Query: 145 FVILCRQKYQLNVEGLMCIPP--AMGNPKPH-FYLLSEIA 181
Q L + GL NP+P LL E A
Sbjct: 175 LARQVSQFPSLRLRGLELYEGVLHGDNPQPQVEALLREAA 214
>gi|49482366|ref|YP_039590.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus MRSA252]
gi|221142240|ref|ZP_03566733.1| pyridoxal-dependent decarboxylase decarboxylase [Staphylococcus
aureus subsp. aureus str. JKD6009]
gi|257424263|ref|ZP_05600692.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257426939|ref|ZP_05603341.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257429577|ref|ZP_05605964.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus 68-397]
gi|257432224|ref|ZP_05608587.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus E1410]
gi|257435183|ref|ZP_05611234.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus M876]
gi|282902714|ref|ZP_06310607.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus C160]
gi|282907116|ref|ZP_06314964.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282912362|ref|ZP_06320158.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282912980|ref|ZP_06320772.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus M899]
gi|282921396|ref|ZP_06329114.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
C427]
gi|282922607|ref|ZP_06330297.1| siderophore staphylobactin biosynthesis protein SbnH
[Staphylococcus aureus subsp. aureus C101]
gi|283959571|ref|ZP_06377012.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus A017934/97]
gi|293498035|ref|ZP_06665889.1| siderophore staphylobactin biosynthesis protein SbnH
[Staphylococcus aureus subsp. aureus 58-424]
gi|293511624|ref|ZP_06670318.1| siderophore staphylobactin biosynthesis protein SbnH
[Staphylococcus aureus subsp. aureus M809]
gi|293550233|ref|ZP_06672905.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus M1015]
gi|295426669|ref|ZP_06819308.1| siderophore staphylobactin biosynthesis protein SbnH
[Staphylococcus aureus subsp. aureus EMRSA16]
gi|297589130|ref|ZP_06947771.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
MN8]
gi|49240495|emb|CAG39152.1| pyridoxal-dependent decarboxylase decarboxylase [Staphylococcus
aureus subsp. aureus MRSA252]
gi|257273281|gb|EEV05383.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257276570|gb|EEV08021.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257280058|gb|EEV10645.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus 68-397]
gi|257283103|gb|EEV13235.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus E1410]
gi|257285779|gb|EEV15895.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus M876]
gi|269939651|emb|CBI48019.1| pyridoxal-dependent decarboxylase decarboxylase [Staphylococcus
aureus subsp. aureus TW20]
gi|282314828|gb|EFB45214.1| siderophore staphylobactin biosynthesis protein SbnH
[Staphylococcus aureus subsp. aureus C101]
gi|282315811|gb|EFB46195.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
C427]
gi|282323080|gb|EFB53399.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus M899]
gi|282324058|gb|EFB54374.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282330015|gb|EFB59536.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282597173|gb|EFC02132.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus C160]
gi|283789163|gb|EFC27990.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus A017934/97]
gi|290919280|gb|EFD96356.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus M1015]
gi|291096966|gb|EFE27224.1| siderophore staphylobactin biosynthesis protein SbnH
[Staphylococcus aureus subsp. aureus 58-424]
gi|291465582|gb|EFF08114.1| siderophore staphylobactin biosynthesis protein SbnH
[Staphylococcus aureus subsp. aureus M809]
gi|295129121|gb|EFG58748.1| siderophore staphylobactin biosynthesis protein SbnH
[Staphylococcus aureus subsp. aureus EMRSA16]
gi|297577641|gb|EFH96354.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
MN8]
gi|302750005|gb|ADL64182.1| pyridoxal-dependent decarboxylase decarboxylase [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|312436765|gb|ADQ75836.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus TCH60]
gi|315194579|gb|EFU24968.1| pyridoxal-dependent decarboxylase decarboxylase [Staphylococcus
aureus subsp. aureus CGS00]
gi|329312822|gb|AEB87235.1| Pyridoxal-dependent decarboxylase decarboxylase [Staphylococcus
aureus subsp. aureus T0131]
Length = 400
Score = 42.3 bits (99), Expect = 0.043, Method: Composition-based stats.
Identities = 9/83 (10%), Positives = 25/83 (30%), Gaps = 12/83 (14%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT-----------GYEIQKSGI 137
+ I V L+ + + + + ++VN + GI
Sbjct: 103 AVSEGVQRIH-VESMHELQRLNAILEDEDKTQHILLRVNLAGPFPNATLHMAGRPTQFGI 161
Query: 138 MPNQTKDFVILCRQKYQLNVEGL 160
++ D + ++++G
Sbjct: 162 SEDEVDDVIEAALAMPNIHLDGF 184
>gi|148827915|ref|YP_001292668.1| diaminopimelate decarboxylase [Haemophilus influenzae PittGG]
gi|148719157|gb|ABR00285.1| diaminopimelate decarboxylase [Haemophilus influenzae PittGG]
Length = 450
Score = 42.3 bits (99), Expect = 0.045, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 24/117 (20%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKD 144
+E+VS K ++ + + P+ ++VN + K G+ N+ ++
Sbjct: 124 VESVSELKH---INQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEARE 180
Query: 145 FVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ + L L +G
Sbjct: 181 VYKLASTLPNIKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLG 237
>gi|224824431|ref|ZP_03697538.1| alanine racemase domain protein [Lutiella nitroferrum 2002]
gi|224602924|gb|EEG09100.1| alanine racemase domain protein [Lutiella nitroferrum 2002]
Length = 628
Score = 42.3 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 20/141 (14%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
++V D I S +T LS ++ V + ++ G + GI+P++T D+V
Sbjct: 89 QVVRHAD-ISLNSELQTLQALSRAAVQLGVVHDVVLMIDLG--DLREGILPHETMDYVEQ 145
Query: 149 CRQKYQLNVEGLMC-------IPPAMGNPKPHFYLLSEIARE--CKLTKLSMGMTRDFEL 199
+ + G+ I P + N YL EI R +L +S G F L
Sbjct: 146 ILALAGVRLIGVGTNLACVGGIQPTVDNLSNLAYLADEIRRRHAIELPIVSGG--NTFSL 203
Query: 200 AIAS------GATSVRIGSGI 214
+ G +R+G+ I
Sbjct: 204 PLLEQGQLPAGINHLRLGASI 224
>gi|90426344|ref|YP_534714.1| diaminopimelate decarboxylase [Rhodopseudomonas palustris BisB18]
gi|90108358|gb|ABD90395.1| diaminopimelate decarboxylase [Rhodopseudomonas palustris BisB18]
Length = 421
Score = 42.3 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 16/97 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E LLS + R + ++VN TG K GI ++ ++
Sbjct: 124 VESEPELELLSRIASEMGRTARISVRVNPDVDSGSHAKISTGKSENKFGIPISRAREVYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEI 180
+ L V G+ M I + + P F LL++
Sbjct: 184 RAAKLPGLKVTGVDMHIGSQITDLAPLEVAFRLLADF 220
>gi|323356878|ref|YP_004223274.1| diaminopimelate decarboxylase [Microbacterium testaceum StLB037]
gi|323273249|dbj|BAJ73394.1| diaminopimelate decarboxylase [Microbacterium testaceum StLB037]
Length = 476
Score = 42.3 bits (99), Expect = 0.046, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 12/73 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTG------------YEIQKSGIMPNQTKDFVI 147
+ L+ ++ V ++V TG +E QK G + V
Sbjct: 158 IDSPIEIERLAAIADRRGVVQSVLVRVRTGVHAETHAFLATAHEDQKFGFSLEGAAEAVA 217
Query: 148 LCRQKYQLNVEGL 160
R+ L GL
Sbjct: 218 RIRELPSLRFVGL 230
>gi|253733776|ref|ZP_04867941.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
TCH130]
gi|253728243|gb|EES96972.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
TCH130]
Length = 400
Score = 42.3 bits (99), Expect = 0.048, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 39/115 (33%), Gaps = 16/115 (13%)
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSL-FDVIETVSREKTASLLSLEMIKQ 116
Q K + + + F G ++++ + VS I V L+ + +
Sbjct: 73 QGEIAKGLAFKPANHII--FGGPGKTDEELRYAVSEGVQRIH-VESMHELQRLNAILEDE 129
Query: 117 SRFLPVYIQVNT-----------GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ + ++VN + GI ++ D + +++++G
Sbjct: 130 DKTQHILLRVNLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALAMPKIHLDGF 184
>gi|145640803|ref|ZP_01796385.1| diaminopimelate decarboxylase [Haemophilus influenzae R3021]
gi|145274317|gb|EDK14181.1| diaminopimelate decarboxylase [Haemophilus influenzae 22.4-21]
Length = 265
Score = 42.3 bits (99), Expect = 0.049, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 24/117 (20%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKD 144
+E+VS K ++ + + P+ ++VN + K G+ N+ ++
Sbjct: 124 VESVSELKH---INQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEARE 180
Query: 145 FVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ + L L +G
Sbjct: 181 VYKLASTLPNIKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLG 237
>gi|146308950|ref|YP_001189415.1| alanine racemase domain-containing protein [Pseudomonas mendocina
ymp]
gi|145577151|gb|ABP86683.1| alanine racemase domain protein [Pseudomonas mendocina ymp]
Length = 420
Score = 42.3 bits (99), Expect = 0.049, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 44/123 (35%), Gaps = 9/123 (7%)
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K +P+ + + G + ++ +I++ R + + L+ + + L
Sbjct: 120 LLGKPMPVHAALNFYRQLPGHIGFTPARQLT---WLIDSAERLRQYAELARAL---GQPL 173
Query: 121 PVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ ++++ G + G P + + QL ++GLM + + P
Sbjct: 174 RIALEIDIGM--ARGGFRDPQALGQALQHLQDPPQLQLQGLMGYDAHVAHAAPWTEQRRV 231
Query: 180 IAR 182
A
Sbjct: 232 FAD 234
>gi|153933907|ref|YP_001384263.1| alanine racemase domain-containing protein [Clostridium botulinum A
str. ATCC 19397]
gi|153935732|ref|YP_001387802.1| alanine racemase domain-containing protein [Clostridium botulinum A
str. Hall]
gi|152929951|gb|ABS35451.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
A str. ATCC 19397]
gi|152931646|gb|ABS37145.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
A str. Hall]
Length = 353
Score = 42.3 bits (99), Expect = 0.051, Method: Composition-based stats.
Identities = 44/207 (21%), Positives = 83/207 (40%), Gaps = 24/207 (11%)
Query: 24 PKDSVSLVAVSKMV-DSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLR-KEWDVQLRFIG 80
K + +VAV+K + KI A+ I A++++ E KK + + ++L I
Sbjct: 25 KKRGIKVVAVTKTFCGNPKIAKAIAEEKVDILADSRI-ENLKKLAHINLPKMLLRLPMI- 82
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
++V E+V D I VS T LS E IKQ++ + + ++ G ++++
Sbjct: 83 ----SQVEEVVKYAD-ISLVSDIITIRELSKEAIKQNKIHSIILMIDLG-DLREGIFNEE 136
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR---------ECKLTKLSM 191
+ V + + G+ G P + LS++ K+ +S
Sbjct: 137 EIYITVKEILNFKNVKLMGIGTNLSCYGGVIPTYKNLSQLVNIKKNIENKFNIKIEVISG 196
Query: 192 GMTRDFEL----AIASGATSVRIGSGI 214
G + L I +R+G+ I
Sbjct: 197 GNSGSISLFKDNKIPQEINQLRLGASI 223
>gi|124265522|ref|YP_001019526.1| low-specificity D-threonine aldolase [Methylibium petroleiphilum
PM1]
gi|124258297|gb|ABM93291.1| low-specificity D-threonine aldolase [Methylibium petroleiphilum
PM1]
Length = 372
Score = 42.3 bits (99), Expect = 0.051, Method: Composition-based stats.
Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 86 KVSEIVSLFDVIE---TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
K++ + +L ++ V L+ + R + VY++++ G + G+ +
Sbjct: 99 KLARLAALPSDVQLAIAVDSVVGIERLAAAIQASGRQIDVYVEIDAGQ--GRCGVPAAEA 156
Query: 143 KDFVILCRQKYQLNVEGL 160
L GL
Sbjct: 157 GALARQVVAHDGLRFAGL 174
>gi|55853671|gb|AAV67809.1| siderophore synthesis decarboxylase [Ralstonia solanacearum]
Length = 413
Score = 42.3 bits (99), Expect = 0.051, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 29/132 (21%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------------TGY 130
+ ++I V E L + R V ++VN G
Sbjct: 102 ALERGVELIH-VESELQLRRLDAVARRMGRRARVLLRVNPNPLSADSAGKRPQGTLTMGG 160
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLS-------EIAR 182
+ + GI + D + L R + V GL + H L+ + R
Sbjct: 161 QPTQFGIEEDAVPDLIRLARGLAGVEVVGLHLHALSNNLDADSHLALMRHYLALALRLRR 220
Query: 183 ECK--LTKLSMG 192
E L L++G
Sbjct: 221 EHGLTLDTLNVG 232
>gi|262052059|ref|ZP_06024269.1| hypothetical protein SA930_0163 [Staphylococcus aureus 930918-3]
gi|259160037|gb|EEW45071.1| hypothetical protein SA930_0163 [Staphylococcus aureus 930918-3]
Length = 400
Score = 42.3 bits (99), Expect = 0.052, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 39/115 (33%), Gaps = 16/115 (13%)
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSL-FDVIETVSREKTASLLSLEMIKQ 116
Q K + + + F G ++++ + VS I V L+ + +
Sbjct: 73 QGEIAKGLAFKPANHII--FGGPGKTDEELRYAVSEGVQRIH-VESMHELQRLNAILEDE 129
Query: 117 SRFLPVYIQVNT-----------GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ + ++VN + GI ++ D + +++++G
Sbjct: 130 DKTQHILLRVNLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALAMPKIHLDGF 184
>gi|57652470|ref|YP_185011.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus COL]
gi|87160623|ref|YP_492842.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88193897|ref|YP_498682.1| hypothetical protein SAOUHSC_00082 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|151220279|ref|YP_001331102.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161508391|ref|YP_001574050.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|258452269|ref|ZP_05700283.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus A5948]
gi|262049760|ref|ZP_06022625.1| hypothetical protein SAD30_1859 [Staphylococcus aureus D30]
gi|282923784|ref|ZP_06331461.1| diaminopimelate decarboxylase [Staphylococcus aureus A9765]
gi|284023133|ref|ZP_06377531.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus 132]
gi|32441994|gb|AAP82070.1| SbnH [Staphylococcus aureus]
gi|57286656|gb|AAW38750.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus COL]
gi|87126597|gb|ABD21111.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87201455|gb|ABD29265.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|150373079|dbj|BAF66339.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160367200|gb|ABX28171.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257860106|gb|EEV82940.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus A5948]
gi|259162150|gb|EEW46727.1| hypothetical protein SAD30_1859 [Staphylococcus aureus D30]
gi|282593026|gb|EFB98027.1| diaminopimelate decarboxylase [Staphylococcus aureus A9765]
gi|315196461|gb|EFU26811.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
CGS01]
gi|320139543|gb|EFW31414.1| pyridoxal-dependent decarboxylase, sheet domain protein
[Staphylococcus aureus subsp. aureus MRSA131]
gi|320142140|gb|EFW33959.1| pyridoxal-dependent decarboxylase, sheet domain protein
[Staphylococcus aureus subsp. aureus MRSA177]
gi|329731721|gb|EGG68081.1| Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein
[Staphylococcus aureus subsp. aureus 21189]
Length = 400
Score = 42.3 bits (99), Expect = 0.052, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 39/115 (33%), Gaps = 16/115 (13%)
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSL-FDVIETVSREKTASLLSLEMIKQ 116
Q K + + + F G ++++ + VS I V L+ + +
Sbjct: 73 QGEIAKGLAFKPANHII--FGGPGKTDEELRYAVSEGVQRIH-VESMHELQRLNAILEDE 129
Query: 117 SRFLPVYIQVNT-----------GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ + ++VN + GI ++ D + +++++G
Sbjct: 130 DKTQHILLRVNLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALAMPKIHLDGF 184
>gi|262045022|ref|ZP_06018064.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259037749|gb|EEW38978.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 406
Score = 42.3 bits (99), Expect = 0.053, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 3/76 (3%)
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKD 144
++ D I V E LS Q + L V I+ G + G +
Sbjct: 117 QLKAHYRAVDFICCVDSEVNVRALSTFFADQGQTLDVLIE--LGVPGGRCGCRSVDDALA 174
Query: 145 FVILCRQKYQLNVEGL 160
L + GL
Sbjct: 175 LAQRVSDLPGLRLRGL 190
>gi|221635562|ref|YP_002523438.1| alanine racemase [Thermomicrobium roseum DSM 5159]
gi|221158172|gb|ACM07290.1| alanine racemase [Thermomicrobium roseum DSM 5159]
Length = 433
Score = 42.3 bits (99), Expect = 0.054, Method: Composition-based stats.
Identities = 25/186 (13%), Positives = 51/186 (27%), Gaps = 30/186 (16%)
Query: 16 NSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQ------------VIFAENKLQEAKK 63
N+ L + V L+AV K A G +++E
Sbjct: 52 NARTLVRFLPPDVELLAVLK-------ANAYGHGLVPSALAALAGGARWLGVARIEEGL- 103
Query: 64 KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVY 123
+ + + +G ++ V+ D+ V + R V+
Sbjct: 104 --LLRQAGLTAPVIVLGPPNHARLRAAVA-ADLTLAVGSLADVEAVRSAASALGRPARVH 160
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-----KPHFYLLS 178
++V+TG + G P++ L+ EG+ P +
Sbjct: 161 LEVDTGM--HRFGATPDEAVALARGLASDPLLSFEGIYTHFATADAPDCRTLRRQMERFR 218
Query: 179 EIAREC 184
+
Sbjct: 219 AVRERL 224
>gi|152985290|ref|YP_001351336.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa PA7]
gi|150960448|gb|ABR82473.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa PA7]
Length = 415
Score = 42.3 bits (99), Expect = 0.054, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 34/138 (24%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + L + PV ++VN + K GI ++ +
Sbjct: 124 VESSEELERLQRVAAELGVKAPVSLRVNPDVDAQTHPYISTGLKENKFGIAIDEAEAIYA 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEI--------ARECKLTKLSMG------ 192
+ L V G+ C I + P L + AR + L +G
Sbjct: 184 RAAELDHLEVIGVDCHIGSQLTQLAPFLDALERLLGLVDRLAARGIAIRHLDLGGGLGVR 243
Query: 193 -------MTRDFELAIAS 203
+ D+ AI
Sbjct: 244 YRDEQPPLAGDYIRAIRE 261
>gi|323142966|ref|ZP_08077674.1| hypothetical protein HMPREF9444_00282 [Succinatimonas hippei YIT
12066]
gi|322417239|gb|EFY07865.1| hypothetical protein HMPREF9444_00282 [Succinatimonas hippei YIT
12066]
Length = 368
Score = 41.9 bits (98), Expect = 0.054, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ LLS E + + + +I VN G ++G+ + + + + GL
Sbjct: 113 DNLEQIKLLSKEAVCTNEIIHFFIDVNMGM--NRTGVPIEKLNLLADGIKNLKNIQLCGL 170
Query: 161 MCIPPAMGN 169
C +
Sbjct: 171 HCYDGNHND 179
>gi|254447342|ref|ZP_05060808.1| diaminopimelate decarboxylase [gamma proteobacterium HTCC5015]
gi|198262685|gb|EDY86964.1| diaminopimelate decarboxylase [gamma proteobacterium HTCC5015]
Length = 418
Score = 41.9 bits (98), Expect = 0.055, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L+ + + P+ ++VN + K G+ +Q
Sbjct: 129 VESHAELLRLNRVAEEMGKTAPISLRVNPDVDAQTHPYISTGLKENKFGVAVDQALAVYR 188
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
+ + G L I P + K L+ ++ A + ++ L +G
Sbjct: 189 EADALPNIAIHGLDCHIGSQLTTIDPFVDALKRVLALVDQLAAEDIEIHHLDLG 242
>gi|320451536|ref|YP_004203632.1| alanine racemase [Thermus scotoductus SA-01]
gi|320151705|gb|ADW23083.1| alanine racemase [Thermus scotoductus SA-01]
Length = 366
Score = 41.9 bits (98), Expect = 0.057, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 59/146 (40%), Gaps = 16/146 (10%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
+GSL + E++ L +++ T+S + A L+ +++V+TG + G
Sbjct: 86 LLGSLHPLEAEEVLRL-NLLPTLSTLEAAQALAGRARALGLTPRAHLKVDTGM--NRVGF 142
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNP------KPHFYLLSEIARECKLTKLS 190
+ KD ++ + VEG+ + A + + F + E E L
Sbjct: 143 PWEKAKDALLAVEAL-GIRVEGVYTHLATASEDEAFVEVQRSRFQRVREALGEGYFYHLE 201
Query: 191 MGMTRDFELAIASGATSVRIGSGIFG 216
+ L + G +VR+G ++G
Sbjct: 202 ----NSYGL-LLHGGENVRVGLALYG 222
>gi|193211960|ref|YP_001997913.1| alanine racemase [Chlorobaculum parvum NCIB 8327]
gi|193085437|gb|ACF10713.1| alanine racemase [Chlorobaculum parvum NCIB 8327]
Length = 384
Score = 41.9 bits (98), Expect = 0.057, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 5/117 (4%)
Query: 47 SCGQVIFAENKLQEAKK-KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKT 105
G F + EA + K + L F L + + ++ TV +T
Sbjct: 68 EEGIREFGVANIHEAIELKQSHRMQPESRILAFASPLAGHIEHYLEHDVEM--TVCDHET 125
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC 162
+ R L V Q + + G+ P + + L + L++ G+
Sbjct: 126 VRTAEAKAAASGRRLRV--QAKIDTGMGRLGVTPEEAHSLLELIDRCPNLDLVGIYT 180
>gi|163790693|ref|ZP_02185120.1| predicted amino acid racemase [Carnobacterium sp. AT7]
gi|159873994|gb|EDP68071.1| predicted amino acid racemase [Carnobacterium sp. AT7]
Length = 385
Score = 41.9 bits (98), Expect = 0.057, Method: Composition-based stats.
Identities = 10/79 (12%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI----QKSGIMPNQTKDFVILCRQKYQ 154
TV + +++ + + ++V + + Q G M + + L +
Sbjct: 125 TVYSLEKLQAINVLAKEIGIKQKILLRVVSEEDELYPGQYGGFMLEELPSLISLFNELKH 184
Query: 155 LNVEGLMCIPPAMGNPKPH 173
+ + GL P + + +
Sbjct: 185 IEISGLTSFPCFLYDAEKE 203
>gi|145637736|ref|ZP_01793388.1| diaminopimelate decarboxylase [Haemophilus influenzae PittHH]
gi|145269085|gb|EDK09036.1| diaminopimelate decarboxylase [Haemophilus influenzae PittHH]
Length = 415
Score = 41.9 bits (98), Expect = 0.058, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 42/117 (35%), Gaps = 24/117 (20%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKD 144
+E+VS K ++ + + P+ ++VN + K G+ ++ ++
Sbjct: 124 VESVSELKH---INQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVDEARE 180
Query: 145 FVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ + L L +G
Sbjct: 181 VYKLASTLPNIKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLG 237
>gi|193215478|ref|YP_001996677.1| alanine racemase [Chloroherpeton thalassium ATCC 35110]
gi|193088955|gb|ACF14230.1| alanine racemase [Chloroherpeton thalassium ATCC 35110]
Length = 387
Score = 41.9 bits (98), Expect = 0.058, Method: Composition-based stats.
Identities = 51/247 (20%), Positives = 88/247 (35%), Gaps = 48/247 (19%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVAL-SCGQVIFAEN 56
+L + + K +I S L+A+ K ++ K+ AL G F
Sbjct: 27 NLRHNARQIKAQIGQSR----------RLMAIVKANAYGHNAGKVAPALVQEGVSDFGVA 76
Query: 57 KLQEA--KKKW--IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
+ EA +K +E L F L+ + D+ TV+ +TA L
Sbjct: 77 NINEAIHLRKALQAAQAREDSQILAFASPLECQMPFYLQHEIDL--TVTNFETAKLAEAV 134
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC--------IP 164
+ L V+++++TG + GI P + LN++G+ +
Sbjct: 135 SKNHGKNLTVHLKIDTGM--GRLGIQPREGFALARYVEASPYLNLKGIYTHFSDSGEDLA 192
Query: 165 PAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA---------TSVRIGSGIF 215
+ + L+SE E K T L + A SGA VR G ++
Sbjct: 193 FTRNQLEIYKKLVSEFEHEAKRTVL--------KHAANSGAIISDNDTYLDMVRPGILLY 244
Query: 216 GERPCQT 222
G P ++
Sbjct: 245 GYTPAKS 251
>gi|145634864|ref|ZP_01790572.1| diaminopimelate decarboxylase [Haemophilus influenzae PittAA]
gi|145268030|gb|EDK08026.1| diaminopimelate decarboxylase [Haemophilus influenzae PittAA]
Length = 415
Score = 41.9 bits (98), Expect = 0.058, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 42/117 (35%), Gaps = 24/117 (20%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKD 144
+E+VS K ++ + + P+ ++VN + K G+ ++ ++
Sbjct: 124 VESVSELKH---INQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVDEARE 180
Query: 145 FVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ + L L +G
Sbjct: 181 VYKLASTLPNIKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLG 237
>gi|126738650|ref|ZP_01754355.1| hypothetical protein RSK20926_09297 [Roseobacter sp. SK209-2-6]
gi|126720449|gb|EBA17155.1| hypothetical protein RSK20926_09297 [Roseobacter sp. SK209-2-6]
Length = 388
Score = 41.9 bits (98), Expect = 0.058, Method: Composition-based stats.
Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ + A ++ LP+ ++++ G + + G + L ++G
Sbjct: 127 IDTLERAQQYDALARERGLVLPIAVELDVG--LHRGGFTTKTLPPAIEAISTLKGLRLQG 184
Query: 160 LMCIPPA 166
M P
Sbjct: 185 AMGYEPH 191
>gi|119384035|ref|YP_915091.1| Orn/DAP/Arg decarboxylase 2 [Paracoccus denitrificans PD1222]
gi|119373802|gb|ABL69395.1| Orn/DAP/Arg decarboxylase 2 [Paracoccus denitrificans PD1222]
Length = 414
Score = 41.9 bits (98), Expect = 0.058, Method: Composition-based stats.
Identities = 12/91 (13%), Positives = 22/91 (24%), Gaps = 17/91 (18%)
Query: 87 VSEIVSLFDVIET------VSREKTASLLSLEMIKQSRFLPVYIQVN-----------TG 129
L IE + + A L + R PV +++
Sbjct: 98 AKREAELRAAIEAGLGELVLESLREARLADAVAAEMGRVQPVLVRLAPARVPKGFGDQMA 157
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
G+ + + L + GL
Sbjct: 158 GRPSPFGVDVEDAAEILPQIAALPNLRIIGL 188
>gi|332289594|ref|YP_004420446.1| bifunctional aspartate kinase/diaminopimelate decarboxylase protein
[Gallibacterium anatis UMN179]
gi|330432490|gb|AEC17549.1| bifunctional aspartate kinase/diaminopimelate decarboxylase protein
[Gallibacterium anatis UMN179]
Length = 417
Score = 41.9 bits (98), Expect = 0.059, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 41/114 (35%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V E ++ K + P+ ++VN + K G+ + ++
Sbjct: 124 VESEAELLRINQVAEKLGKKAPISLRVNPDVDAKTHPYISTGLKKNKFGVSVERAREVYR 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + + G+ C + P + + LL ++ ++ +L L +G
Sbjct: 184 LAKTLPHIQIVGMDCHIGSQLTELQPFLDSADRLLVLLEQLRQDGIELQHLDLG 237
>gi|170742956|ref|YP_001771611.1| diaminopimelate decarboxylase [Methylobacterium sp. 4-46]
gi|168197230|gb|ACA19177.1| diaminopimelate decarboxylase [Methylobacterium sp. 4-46]
Length = 423
Score = 41.9 bits (98), Expect = 0.059, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 16/101 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E LS + + PV I+VN TG K GI ++ ++
Sbjct: 124 VESEPELEALSEVARARGQTAPVSIRVNPDVDARTHAKISTGKSENKFGIPISRAREVYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKPHF---YLLSEIAREC 184
L V G+ M I + + P+ LL+E+AR+
Sbjct: 184 RAAALPGLAVAGVDMHIGSQITDLAPYDNAASLLAELARDL 224
>gi|254482994|ref|ZP_05096229.1| Alanine racemase, N-terminal domain family [marine gamma
proteobacterium HTCC2148]
gi|214036679|gb|EEB77351.1| Alanine racemase, N-terminal domain family [marine gamma
proteobacterium HTCC2148]
Length = 419
Score = 41.9 bits (98), Expect = 0.060, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 10/107 (9%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVE 158
+ + + + L + I+++ G + + G+ + + + L + L
Sbjct: 152 LDTPERVKQYAALASELGEALSICIELDVG--LHRGGVSNDSDFLEMLTLLQDSEHLKFR 209
Query: 159 GLMCIPPAM----GNPKPHFYLLSEIARECKLTKLSMGM-TRDFELA 200
GLM P + GNP+ + + +A +L+ D+ +A
Sbjct: 210 GLMGYEPHIVKVPGNPETYRD--ASMAAYSHYLELARNTLAADWPVA 254
>gi|258424237|ref|ZP_05687118.1| orn/DAP/Arg decarboxylase 2 [Staphylococcus aureus A9635]
gi|257845503|gb|EEV69536.1| orn/DAP/Arg decarboxylase 2 [Staphylococcus aureus A9635]
Length = 400
Score = 41.9 bits (98), Expect = 0.060, Method: Composition-based stats.
Identities = 14/115 (12%), Positives = 38/115 (33%), Gaps = 16/115 (13%)
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSL-FDVIETVSREKTASLLSLEMIKQ 116
Q K + + + F G ++++ + VS I V L+ + +
Sbjct: 73 QGEIAKGLAFKPANHII--FGGPGKTDEELRYAVSEGVQRIH-VESMHELQRLNAILEDE 129
Query: 117 SRFLPVYIQVNTGY-----------EIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ + ++VN + G+ ++ D + ++++G
Sbjct: 130 DKTQHILLRVNLAGPFPNATLHMAGRPTQFGVSEDEVDDVIEAALAMSNIHLDGF 184
>gi|288960554|ref|YP_003450894.1| alanine racemase domain-containing protein [Azospirillum sp. B510]
gi|288912862|dbj|BAI74350.1| alanine racemase domain-containing protein [Azospirillum sp. B510]
Length = 352
Score = 41.9 bits (98), Expect = 0.061, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 40/129 (31%), Gaps = 13/129 (10%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNV 157
+ ++ + + + ++ ++G + G+ ++
Sbjct: 106 ALDNAVALDTVAAAATRAGVEIGILVEFDSG--DGRCGVQTADEVLTLARRAAGNGLTRF 163
Query: 158 EGLMCIPPAMGNPKPHFYLLSEIARECKL--TKLSM----GMTRDFELAIASGATSVRIG 211
GLM P P + + +S+ G EL G T +R+G
Sbjct: 164 RGLMTY-PRGPRTVPFIAEARSLLDGAGIAVETVSVGGTPGCWDTHELP---GVTELRVG 219
Query: 212 SGIFGERPC 220
+ I+ +R
Sbjct: 220 TYIYHDRAT 228
>gi|21232485|ref|NP_638402.1| diaminopimelate decarboxylase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66767431|ref|YP_242193.1| diaminopimelate decarboxylase [Xanthomonas campestris pv.
campestris str. 8004]
gi|188990536|ref|YP_001902546.1| Putative diaminopimelate decarboxylase [Xanthomonas campestris pv.
campestris str. B100]
gi|21114272|gb|AAM42326.1| diaminopimelate decarboxylase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66572763|gb|AAY48173.1| diaminopimelate decarboxylase [Xanthomonas campestris pv.
campestris str. 8004]
gi|167732296|emb|CAP50488.1| Putative diaminopimelate decarboxylase [Xanthomonas campestris pv.
campestris]
Length = 427
Score = 41.9 bits (98), Expect = 0.061, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 51/126 (40%), Gaps = 27/126 (21%)
Query: 80 GSLQSNKVSEIVSLFDV---IETVSREKTASLLSLEMIKQSRF-LPVYIQVNT------- 128
G L+S ++++ V L D +E++ + + ++ ++ + R +PV++++N
Sbjct: 101 GKLES-ELAQAVRLPDCTVHVESLGELQRLAAIARQIAQPDRRRIPVFLRMNIAVPGAQT 159
Query: 129 -----GYEIQKSGIMPNQTKDFVILCRQKYQLNVEG----LMCIPPAMGNPKPHFYLLSE 179
G + G+ P+ ++ R L + G LM + + L
Sbjct: 160 TRLMMGGQPSPFGLDPDDLDAALLQLRASPALELRGFHFHLMS------HQRDAAAQLHL 213
Query: 180 IARECK 185
IA +
Sbjct: 214 IAAYLR 219
>gi|329732404|gb|EGG68754.1| Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein
[Staphylococcus aureus subsp. aureus 21193]
Length = 400
Score = 41.9 bits (98), Expect = 0.061, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 16/115 (13%)
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSL-FDVIETVSREKTASLLSLEMIKQ 116
Q K + + + F G ++++ + VS I V L+ + +
Sbjct: 73 QGEIAKGLAFKPANHII--FGGPGKTDEELRYAVSEGVQRIH-VESMHELQRLNAILEDE 129
Query: 117 SRFLPVYIQVNT-----------GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ + ++VN + GI ++ D + ++++G
Sbjct: 130 DKTQHILLRVNLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALVMPNIHLDGF 184
>gi|145632076|ref|ZP_01787811.1| diaminopimelate decarboxylase [Haemophilus influenzae 3655]
gi|144986983|gb|EDJ93513.1| diaminopimelate decarboxylase [Haemophilus influenzae 3655]
Length = 415
Score = 41.9 bits (98), Expect = 0.061, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 42/117 (35%), Gaps = 24/117 (20%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKD 144
+E+VS K ++ + + P+ ++VN + K G+ ++ ++
Sbjct: 124 VESVSELKH---INQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVDEARE 180
Query: 145 FVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ + L L +G
Sbjct: 181 VYKLASTLPNIKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLG 237
>gi|15923113|ref|NP_370647.1| diaminopimelate decarboxylase protein [Staphylococcus aureus subsp.
aureus Mu50]
gi|15925827|ref|NP_373360.1| hypothetical protein SA0119 [Staphylococcus aureus subsp. aureus
N315]
gi|148266550|ref|YP_001245493.1| Orn/DAP/Arg decarboxylase 2 [Staphylococcus aureus subsp. aureus
JH9]
gi|150392588|ref|YP_001315263.1| Orn/DAP/Arg decarboxylase 2 [Staphylococcus aureus subsp. aureus
JH1]
gi|156978453|ref|YP_001440712.1| hypothetical protein SAHV_0122 [Staphylococcus aureus subsp. aureus
Mu3]
gi|253316262|ref|ZP_04839475.1| hypothetical protein SauraC_09001 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|255004921|ref|ZP_05143522.2| hypothetical protein SauraM_00590 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257794473|ref|ZP_05643452.1| orn/DAP/Arg decarboxylase [Staphylococcus aureus A9781]
gi|258407567|ref|ZP_05680703.1| orn/DAP/Arg decarboxylase [Staphylococcus aureus A9763]
gi|258419840|ref|ZP_05682802.1| orn/DAP/Arg decarboxylase 2 [Staphylococcus aureus A9719]
gi|258438645|ref|ZP_05689868.1| diaminopimelate decarboxylase [Staphylococcus aureus A9299]
gi|258443897|ref|ZP_05692235.1| diaminopimelate decarboxylase [Staphylococcus aureus A8115]
gi|258445097|ref|ZP_05693334.1| orn/DAP/Arg decarboxylase 2 [Staphylococcus aureus A6300]
gi|258447701|ref|ZP_05695840.1| orn/DAP/Arg decarboxylase 2 [Staphylococcus aureus A6224]
gi|258455675|ref|ZP_05703630.1| orn/DAP/Arg decarboxylase 2 [Staphylococcus aureus A5937]
gi|269201775|ref|YP_003281044.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus ED98]
gi|282894345|ref|ZP_06302575.1| siderophore staphylobactin biosynthesis protein SbnH
[Staphylococcus aureus A8117]
gi|282928375|ref|ZP_06335978.1| siderophore staphylobactin biosynthesis protein SbnH
[Staphylococcus aureus A10102]
gi|295405394|ref|ZP_06815204.1| siderophore staphylobactin biosynthesis protein SbnH
[Staphylococcus aureus A8819]
gi|296275942|ref|ZP_06858449.1| diaminopimelate decarboxylase [Staphylococcus aureus subsp. aureus
MR1]
gi|297244730|ref|ZP_06928610.1| siderophore staphylobactin biosynthesis protein SbnH
[Staphylococcus aureus A8796]
gi|13700039|dbj|BAB41338.1| putative diaminopimelate decarboxylase [Staphylococcus aureus
subsp. aureus N315]
gi|14245890|dbj|BAB56285.1| probable diaminopimelate decarboxylase protein [Staphylococcus
aureus subsp. aureus Mu50]
gi|147739619|gb|ABQ47917.1| Orn/DAP/Arg decarboxylase 2 [Staphylococcus aureus subsp. aureus
JH9]
gi|149945040|gb|ABR50976.1| Orn/DAP/Arg decarboxylase 2 [Staphylococcus aureus subsp. aureus
JH1]
gi|156720588|dbj|BAF77005.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
gi|257788445|gb|EEV26785.1| orn/DAP/Arg decarboxylase [Staphylococcus aureus A9781]
gi|257840792|gb|EEV65249.1| orn/DAP/Arg decarboxylase [Staphylococcus aureus A9763]
gi|257844122|gb|EEV68509.1| orn/DAP/Arg decarboxylase 2 [Staphylococcus aureus A9719]
gi|257848204|gb|EEV72196.1| diaminopimelate decarboxylase [Staphylococcus aureus A9299]
gi|257850781|gb|EEV74725.1| diaminopimelate decarboxylase [Staphylococcus aureus A8115]
gi|257856005|gb|EEV78924.1| orn/DAP/Arg decarboxylase 2 [Staphylococcus aureus A6300]
gi|257858983|gb|EEV81847.1| orn/DAP/Arg decarboxylase 2 [Staphylococcus aureus A6224]
gi|257861887|gb|EEV84660.1| orn/DAP/Arg decarboxylase 2 [Staphylococcus aureus A5937]
gi|262074065|gb|ACY10038.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus ED98]
gi|282589959|gb|EFB95042.1| siderophore staphylobactin biosynthesis protein SbnH
[Staphylococcus aureus A10102]
gi|282763390|gb|EFC03520.1| siderophore staphylobactin biosynthesis protein SbnH
[Staphylococcus aureus A8117]
gi|285815848|gb|ADC36335.1| Siderophore staphylobactin biosynthesis protein SbnH
[Staphylococcus aureus 04-02981]
gi|294969469|gb|EFG45488.1| siderophore staphylobactin biosynthesis protein SbnH
[Staphylococcus aureus A8819]
gi|297178247|gb|EFH37494.1| siderophore staphylobactin biosynthesis protein SbnH
[Staphylococcus aureus A8796]
gi|312828640|emb|CBX33482.1| pyridoxal-dependent decarboxylase, C-terminal sheet domain protein
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315129103|gb|EFT85099.1| hypothetical protein CGSSa03_13832 [Staphylococcus aureus subsp.
aureus CGS03]
gi|329725668|gb|EGG62147.1| Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein
[Staphylococcus aureus subsp. aureus 21172]
Length = 400
Score = 41.9 bits (98), Expect = 0.061, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 16/115 (13%)
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSL-FDVIETVSREKTASLLSLEMIKQ 116
Q K + + + F G ++++ + VS I V L+ + +
Sbjct: 73 QGEIAKGLAFKPANHII--FGGPGKTDEELRYAVSEGVQRIH-VESMHELQRLNAILEDE 129
Query: 117 SRFLPVYIQVNT-----------GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ + ++VN + GI ++ D + ++++G
Sbjct: 130 DKTQHILLRVNLAGPFPNATLHMAGRPTQFGISEDEVDDVIEAALVMPNIHLDGF 184
>gi|323487115|ref|ZP_08092423.1| hypothetical protein HMPREF9474_04174 [Clostridium symbiosum
WAL-14163]
gi|323694622|ref|ZP_08108788.1| alanine racemase [Clostridium symbiosum WAL-14673]
gi|323399616|gb|EGA92006.1| hypothetical protein HMPREF9474_04174 [Clostridium symbiosum
WAL-14163]
gi|323501390|gb|EGB17286.1| alanine racemase [Clostridium symbiosum WAL-14673]
Length = 393
Score = 41.9 bits (98), Expect = 0.062, Method: Composition-based stats.
Identities = 35/182 (19%), Positives = 61/182 (33%), Gaps = 22/182 (12%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIRVALS---CGQVIFAENKL 58
L + +E A A P + ++ V K + + A+ CG
Sbjct: 13 NLDNIIKNMETMA--AGLPSGT-GIIGVVKTDGYGHGAVPVAKAIDPFVCG-------YA 62
Query: 59 QEAKKKWIPLRKEWDVQLRFI-GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
A ++ I LRK + I GS E++ D+ + A LS +K+
Sbjct: 63 VAAVEEGIILRKHKITKPVLILGSTHERYFKELLDY-DIRPALYEYSKAEKLSKTAVKEG 121
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+ ++I ++TG + G P + V + +EGL F
Sbjct: 122 KTAKIHIALDTGM--SRIGFQPGEASVREVERIHTLPGIRIEGLFTHFSKADESDKDFTE 179
Query: 177 LS 178
L
Sbjct: 180 LQ 181
>gi|229844596|ref|ZP_04464735.1| diaminopimelate decarboxylase [Haemophilus influenzae 6P18H1]
gi|229812310|gb|EEP48000.1| diaminopimelate decarboxylase [Haemophilus influenzae 6P18H1]
Length = 415
Score = 41.9 bits (98), Expect = 0.063, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 42/117 (35%), Gaps = 24/117 (20%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKD 144
+E+VS K ++ + + P+ ++VN + K G+ ++ ++
Sbjct: 124 VESVSELKH---INQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVDEARE 180
Query: 145 FVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ + L L +G
Sbjct: 181 VYKLASTLPNIKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLG 237
>gi|312888040|ref|ZP_07747624.1| alanine racemase domain protein [Mucilaginibacter paludis DSM
18603]
gi|311299521|gb|EFQ76606.1| alanine racemase domain protein [Mucilaginibacter paludis DSM
18603]
Length = 367
Score = 41.9 bits (98), Expect = 0.064, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 50/153 (32%), Gaps = 31/153 (20%)
Query: 35 KMV-DSKKIRVALSCGQVIF-----AENKLQEAKKKWIPLRKEWDVQL----------RF 78
K S+ + + L G F AE + + L DV L RF
Sbjct: 47 KTHKSSQAVELCLEAGISKFKCATIAE-------AEMLALCNAPDVLLAYQPVGPKIDRF 99
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
I ++ +++ L V A ++ + + VYI +N G +SGI+
Sbjct: 100 IALIKHYTATQLACL------VDDYTVAERMNELALANQLTIQVYIDLNVGM--NRSGIV 151
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171
C + V+GL + +
Sbjct: 152 LQHALALYQRCAALPAIQVKGLHAYDGHIHDED 184
>gi|152973259|ref|YP_001338405.1| hypothetical protein KPN_04792 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150958108|gb|ABR80138.1| hypothetical protein KPN_04792 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 391
Score = 41.9 bits (98), Expect = 0.064, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 22/76 (28%), Gaps = 3/76 (3%)
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKD 144
++ D I V E LS Q + L V I+ G + G N
Sbjct: 102 QLKAHYRAVDFICCVDSEVNVRALSAFFADQGQTLDVLIE--LGVPSGRCGCRSVNDALA 159
Query: 145 FVILCRQKYQLNVEGL 160
L + GL
Sbjct: 160 LAQRVSDLPGLRLRGL 175
>gi|189347602|ref|YP_001944131.1| alanine racemase [Chlorobium limicola DSM 245]
gi|189341749|gb|ACD91152.1| alanine racemase [Chlorobium limicola DSM 245]
Length = 374
Score = 41.9 bits (98), Expect = 0.064, Method: Composition-based stats.
Identities = 33/191 (17%), Positives = 60/191 (31%), Gaps = 15/191 (7%)
Query: 37 VDSKKIRVALSC-GQVIFAENKLQEAKK-KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF 94
++ L G F +QEA + K+ L F L+ +
Sbjct: 47 HGVHRVAETLESVGVSDFGVANIQEAVALRTGGALKKPAAILAFSSPLEPQIDGYLQHDI 106
Query: 95 DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ 154
++ TV + + L V QV + + G+ P +T + + +
Sbjct: 107 EM--TVCSFDILRAAGEKAAAYGKKLAV--QVKVDTGMGRLGLQPAETMELLRNINRSPD 162
Query: 155 LNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA--------- 205
+ ++G+ P + E R S T + A +SGA
Sbjct: 163 IELKGIYTHFAEGSKPGGYTGRQLEEFRNLVTQYESESGTTICKHAASSGAILCRKDAWF 222
Query: 206 TSVRIGSGIFG 216
VR G ++G
Sbjct: 223 DMVRPGILLYG 233
>gi|159901911|gb|ABX10644.1| alanine racemase [uncultured planctomycete 3FN]
Length = 363
Score = 41.9 bits (98), Expect = 0.065, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 19/161 (11%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
+G+ + +V+ + DVI L+ + V ++V+ G + + G
Sbjct: 90 VGTPKWERVAALCRTTDVIIACDHFAQVEPLAAICRRNGVTCRVIVEVDIG--LNRVGTR 147
Query: 139 PN-QTKDFVILCRQKYQLNVEGLM-------CIPPAMGNPKPHFYLLSEIAR-------- 182
P T + L + G+M I ++ +
Sbjct: 148 PGVDTTELARSIHALDGLQLAGIMGYEGHLLTIADRDEKRTKIAEAMNVLVHCRDELLGA 207
Query: 183 ECKLTKLSMGMTRDFELAIA-SGATSVRIGSGIFGERPCQT 222
+ +S G T F++ G T ++ G GIF + QT
Sbjct: 208 DLPCEIVSAGGTGSFQITSDCEGITELQAGGGIFADPHYQT 248
>gi|187736490|ref|YP_001878602.1| alanine racemase [Akkermansia muciniphila ATCC BAA-835]
gi|187426542|gb|ACD05821.1| alanine racemase [Akkermansia muciniphila ATCC BAA-835]
Length = 368
Score = 41.9 bits (98), Expect = 0.065, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 16/131 (12%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+S + A+ + + LP+++ V+TG + G +P+Q ++ + + L++EG
Sbjct: 105 ISTMEEAAHYNSLARLYGKTLPIHLSVDTGM--GRGGFLPDQLEELLSRLGELDSLHLEG 162
Query: 160 LMCIPPAMGNPKP-------HFYLL-SEIARECKLTKLSMGMTR---DFELAIASGATSV 208
L P + F + + I + L + + D+E+
Sbjct: 163 LGAHLPCADEDREITLRQISRFEQMAARIREKLPLKYCHLANSAASLDYEIPSN---NMC 219
Query: 209 RIGSGIFGERP 219
R G ++G P
Sbjct: 220 RPGLVLYGFSP 230
>gi|109900371|ref|YP_663626.1| diaminopimelate decarboxylase [Pseudoalteromonas atlantica T6c]
gi|109702652|gb|ABG42572.1| diaminopimelate decarboxylase [Pseudoalteromonas atlantica T6c]
Length = 415
Score = 41.9 bits (98), Expect = 0.065, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V +S + +++ P+ I+VN + K GI Q +
Sbjct: 124 VESPAELERISQVAVAENKIAPISIRVNPDVDAKTHPYISTGLKANKFGIEREQAVEVYR 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L ++G+ C I P + L+ E+A L L +G
Sbjct: 184 HAASLPNLEIKGIDCHIGSQLTEIAPFVDALDKLLVLIDELAENGITLAHLDVG 237
>gi|302186112|ref|ZP_07262785.1| Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2
[Pseudomonas syringae pv. syringae 642]
Length = 402
Score = 41.9 bits (98), Expect = 0.066, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 13/93 (13%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------ 127
G L S+ S +++ + I + + L + R PV++++N
Sbjct: 99 GKLDSDLRSALLNKVEAIH-LESLNEIARLQQLAEQAGRVQPVFLRINPQLPAAQSSRLA 157
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
GI + + V L ++G
Sbjct: 158 MAGTATPFGIDEAELAEAVRRVDNASHLTLKGF 190
>gi|331681335|ref|ZP_08381972.1| alanine racemase, N- domain protein [Escherichia coli H299]
gi|331081556|gb|EGI52717.1| alanine racemase, N- domain protein [Escherichia coli H299]
Length = 406
Score = 41.9 bits (98), Expect = 0.068, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 34/118 (28%), Gaps = 10/118 (8%)
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI 137
I LQ + D I + + A LS Q + L V I+ + G
Sbjct: 114 LIAQLQRH-----YPTVDFICCIDSIENARALSAFFASQQQTLNVMIE--LCVPGGRCGC 166
Query: 138 -MPNQTKDFVILCRQKYQLNVEGLMCIPP--AMGNPKPHFYLLSEIARECKLTKLSMG 192
+ Q L + GL +P+P L A + S+
Sbjct: 167 RSRDAALTLAKQAAQLPGLRLRGLELYEGVLHGDDPQPQVEALLRDAAQLACDMASLV 224
>gi|293395403|ref|ZP_06639687.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
gi|291422087|gb|EFE95332.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
Length = 406
Score = 41.9 bits (98), Expect = 0.068, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 5/95 (5%)
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKD 144
++ + D I + A LS +Q++ L V +++ + G +
Sbjct: 117 RLKSHYAEVDFICCIDSLANARTLSAFFRQQNQVLDVLVELGVVG--GRCGCRSTDSALA 174
Query: 145 FVILCRQKYQLNVEGLMCIPP--AMGNPKPHFYLL 177
L + GL NP+P L
Sbjct: 175 LAAEIANLPGLRLRGLELYEGVLHGDNPQPQVEAL 209
>gi|126437709|ref|YP_001073400.1| hypothetical protein Mjls_5145 [Mycobacterium sp. JLS]
gi|126237509|gb|ABO00910.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length = 416
Score = 41.6 bits (97), Expect = 0.071, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 3/79 (3%)
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCR 150
F V+ V + L+S + R L V ++V ++G +
Sbjct: 145 PEFRVVCWVDSLRGVELMSAALADAVRPLDVCVEVGMAG--GRTGCRTTAEVDAVARAVT 202
Query: 151 QKYQLNVEGLMCIPPAMGN 169
+L + G+ A G
Sbjct: 203 ASPRLRLVGVAGYEAACGQ 221
>gi|288573304|ref|ZP_06391661.1| alanine racemase [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288569045|gb|EFC90602.1| alanine racemase [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 371
Score = 41.6 bits (97), Expect = 0.071, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP 165
A LS + V+++V++G + G +P + + + VEGL
Sbjct: 109 ARALSKAAESEGTPAYVHLKVDSGM--GRIGFLPEEVPAILDELISLPGVVVEGLFT-HF 165
Query: 166 AMGNPKPHFYLLSEIARECKLTKLSM 191
A + + Y S+ R L L+M
Sbjct: 166 ATADERRLDYTESQYRRY--LDVLAM 189
>gi|332285912|ref|YP_004417823.1| alanine racemase-like protein [Pusillimonas sp. T7-7]
gi|330429865|gb|AEC21199.1| alanine racemase-like protein [Pusillimonas sp. T7-7]
Length = 388
Score = 41.6 bits (97), Expect = 0.073, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 57/168 (33%), Gaps = 30/168 (17%)
Query: 76 LRFI---GSLQSNKVSEIVSLFD----VIETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
I + NK + +V L + + ++A L+ +Q+ +PV I+++T
Sbjct: 85 WHDILYAVGIAKNKFAHVVRLMQKGARLTVVLDNTESARALAQFCREQTLTIPVLIEIDT 144
Query: 129 GYEIQKSGIMPN-----QTKDFVILCRQKYQLNVEGLMC-------------IPPAMGNP 170
+SG+ P + D + + + G+M I
Sbjct: 145 DG--HRSGVPPEASLLLEIADLLGRSEAEGGAWLAGVMTHAGASYACTSADQIEAMAEQE 202
Query: 171 KPHFYLLSEIARECKL--TKLSMGMTRDFELA-IASGATSVRIGSGIF 215
+ ++ R +S+G T A G T VR G +F
Sbjct: 203 RAGAVHAAQRLRSAGFAAPVVSVGSTPTAHFARSLEGVTEVRAGVYVF 250
>gi|238019929|ref|ZP_04600355.1| hypothetical protein VEIDISOL_01805 [Veillonella dispar ATCC 17748]
gi|237863453|gb|EEP64743.1| hypothetical protein VEIDISOL_01805 [Veillonella dispar ATCC 17748]
Length = 370
Score = 41.6 bits (97), Expect = 0.073, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 12/137 (8%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
E+V+ + I V L + V + V+TG + GI P +F+
Sbjct: 90 ELVADTNSIPAVCESTDLEALDKVAENHDMIIRVAVAVDTGM--HRIGIKPEDAVEFIKR 147
Query: 149 CRQKYQLNVEGL---MCIPPAMGNPKPH--FYLLSEIARECKLTKLSMGMTRDFELAIAS 203
L V+G M A H ++ E + + D+ ++A+
Sbjct: 148 VESYENLEVDGFFSHMSNADAADQSHAHGQAQKFHKMVDEIRAFR----PDADYRFSLAN 203
Query: 204 GATSVRIGSGIF-GERP 219
A + + +F RP
Sbjct: 204 SAGLLSVKDSLFTDARP 220
>gi|269928458|ref|YP_003320779.1| diaminopimelate decarboxylase [Sphaerobacter thermophilus DSM
20745]
gi|269787815|gb|ACZ39957.1| diaminopimelate decarboxylase [Sphaerobacter thermophilus DSM
20745]
Length = 445
Score = 41.6 bits (97), Expect = 0.074, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 19/105 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN-----------TGYEIQKSGIMPNQTKDFVIL 148
V L+ + R + V +++N G + G+ + V L
Sbjct: 135 VESLGEIERLARVAEGEGRDVGVGLRINPAQPLIGSHMRMGGRPTQFGVDEADLERAVAL 194
Query: 149 CRQKYQLNVEGL--------MCIPPAMGNPKPHFYLLSEIARECK 185
K +L + GL + + + F L + +A
Sbjct: 195 VESKPRLRLRGLHVYTATQVFDADALVEHARNVFDLAARVADAAG 239
>gi|170757299|ref|YP_001779928.1| alanine racemase [Clostridium botulinum B1 str. Okra]
gi|169122511|gb|ACA46347.1| alanine racemase [Clostridium botulinum B1 str. Okra]
Length = 404
Score = 41.6 bits (97), Expect = 0.074, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 9/108 (8%)
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQT 142
N I+ D+ +VS K A LS + + + V I VN + + G +P +
Sbjct: 97 CNNAETIIKN-DLEVSVSSYKYAEQLSKKAQQLGK--DVKIHVNIDTGMGRLGFLPTEEN 153
Query: 143 KDFVILCRQKYQLNVEGLM----CIPPAMGN-PKPHFYLLSEIARECK 185
+ + + + EGL + + F + + +
Sbjct: 154 LEKIYQISKLPNIIFEGLFSHFSTVDEKNKDYTNEQFKKFLDFYYKLR 201
>gi|20807662|ref|NP_622833.1| alanine racemase [Thermoanaerobacter tengcongensis MB4]
gi|23813662|sp|Q8RAK6|ALR1_THETN RecName: Full=Alanine racemase 1
gi|20516208|gb|AAM24437.1| Alanine racemase [Thermoanaerobacter tengcongensis MB4]
Length = 388
Score = 41.6 bits (97), Expect = 0.074, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 86/244 (35%), Gaps = 48/244 (19%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKM----VDSKKIRVALS-CGQVIFA-- 54
++ + + K+ + +V ++AV K + + L G F
Sbjct: 17 AITHNFREIKKIVGK----------NVKIMAVIKGDAYGHGASYVAKFLEKEGVDYFGVA 66
Query: 55 --ENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
E EA + K + + Q + +IV D+ +TV K A L E
Sbjct: 67 TTE----EALELREKGIKTPILIFGYTPPTQ---LRQIVKH-DLTQTVYDIKYAKELEKE 118
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPK 171
+KQ++ V+I+++TG + I + + ++ L +EG+ A + +
Sbjct: 119 SLKQNKRAKVHIKIDTGL-GRIGYIDFDLAQKEILEMANMRGLILEGIYSHFAAASEDDR 177
Query: 172 ----PHFYLLSEIARECKLTKLSMGMTRDFELAIASGA----------TSVRIGSGIFGE 217
F + + +L + + IA+ A VR G +FG
Sbjct: 178 DYCKEQFDKFMNLISSLEKKRLKIPLKH-----IANAAAILNLNYSHLDMVRPGIILFGA 232
Query: 218 RPCQ 221
P +
Sbjct: 233 YPSK 236
>gi|332304598|ref|YP_004432449.1| diaminopimelate decarboxylase [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332171927|gb|AEE21181.1| diaminopimelate decarboxylase [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 415
Score = 41.6 bits (97), Expect = 0.074, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V +S + +++ P+ I+VN + K GI Q +
Sbjct: 124 VESPAELERISQVAVAENKIAPISIRVNPDVDAKTHPYISTGLKANKFGIEREQAVEVYR 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L ++G+ C I P + L+ E+A L L +G
Sbjct: 184 HAASLPNLEIKGIDCHIGSQLTEIAPFVDALDKLLVLIDELAENGITLAHLDVG 237
>gi|294339197|emb|CAZ87551.1| Diaminopimelate decarboxylase (DAP decarboxylase ) [Thiomonas sp.
3As]
Length = 430
Score = 41.6 bits (97), Expect = 0.074, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V + L+ + V ++VN + K GI +Q +
Sbjct: 137 VESPSELAALNRVAQAAGKVARVALRVNPDVDAGTHPYISTGLKTNKFGISQDQAAQLAL 196
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
Q Q+ + G+ C I + +P+ L ++
Sbjct: 197 QTAQLEQVQLVGIACHIGSQITTVEPYLDALDKVLD 232
>gi|227536022|ref|ZP_03966071.1| alanine racemase domain protein [Sphingobacterium spiritivorum ATCC
33300]
gi|227244135|gb|EEI94150.1| alanine racemase domain protein [Sphingobacterium spiritivorum ATCC
33300]
Length = 372
Score = 41.6 bits (97), Expect = 0.074, Method: Composition-based stats.
Identities = 32/198 (16%), Positives = 68/198 (34%), Gaps = 34/198 (17%)
Query: 18 AILAKRPKDSVS-LVA-----VSKMVD------SKKIRVALS-CGQVIFAENKLQEAKKK 64
A+ + R ++ L+A VSK+ +I G NK++ A
Sbjct: 20 ALYSDRISQNIKQLIAAVNGDVSKLRPHVKTHKLGEILELFKVYGI-----NKVKCATVS 74
Query: 65 WIPLRKEWDVQ-----LRFIGSLQSNKVSEIVSLFDVIE---TVSREKTASLLSLEMIKQ 116
L ++ + +G ++ N+ ++ + I V + + LS +
Sbjct: 75 EAELCAMHGIKNILLAYQPVGQVKQNRWLTLIKKYPEILFSTIVDNLEVTNELSKLGQSK 134
Query: 117 SRFLPVYIQVNTGYEIQKSGIM-PNQTKDFVILCRQKYQLNVEGLMCIPPA---MGNPKP 172
+ +Y+ +NTG ++G+ + D + + + GL N +
Sbjct: 135 NEIFSIYLDINTGM--NRTGVEFKSNWDDLLFQIHELPNIQHLGLHIYDGHLHGTENERT 192
Query: 173 HFY--LLSEIARECKLTK 188
HF S I + +
Sbjct: 193 HFASEAFSLIKEKLHTVE 210
>gi|124024027|ref|YP_001018334.1| alanine racemase [Prochlorococcus marinus str. MIT 9303]
gi|123964313|gb|ABM79069.1| putative Alanine racemase [Prochlorococcus marinus str. MIT 9303]
Length = 398
Score = 41.6 bits (97), Expect = 0.074, Method: Composition-based stats.
Identities = 43/230 (18%), Positives = 75/230 (32%), Gaps = 34/230 (14%)
Query: 14 IENSAILAKRPK-DSVSLVAVSK----MVDSKKI-RVALSCGQVIFAENKLQEAKKKWIP 67
+E + +R +S +L+AV K + + R AL G LQE +
Sbjct: 38 VEANCRSLRRHLCESCALMAVVKADGYGHGAVTVARAALQGGAKSLGVATLQEGIELRQA 97
Query: 68 LRKEWDVQLRFIGSL-QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ L G+L S + + ++ T+S + L R IQ+
Sbjct: 98 GHNAPVLVL---GNLTHSEDLKACLHW-QLMPTLSSMREVLLCQNLADGSGRQFR--IQL 151
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC------------IPPAMGNPKPHF 174
+ + G + V QL ++G+ + HF
Sbjct: 152 KIDTGMTRLGCELKEAPRLVEAIDHLNQLELKGIYSHLALADGDLQGEAAMVTDQQQQHF 211
Query: 175 -YLLSEIARECK--LTKL--SMGMTRDFELAIASGATSVRIGSGIFGERP 219
+L + + + L S G RD L VR+G ++G P
Sbjct: 212 EAVLRTLPEQHNGFMRHLANSAGTLRDRGL----HYDMVRVGLALYGHSP 257
>gi|110835189|ref|YP_694048.1| diaminopimelate decarboxylase [Alcanivorax borkumensis SK2]
gi|110648300|emb|CAL17776.1| diaminopimelate decarboxylase [Alcanivorax borkumensis SK2]
Length = 413
Score = 41.6 bits (97), Expect = 0.074, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 23/126 (18%)
Query: 90 IVSLFDVIET--VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKS 135
+L I V LL+L + R P+ I+VN + K
Sbjct: 112 AAALKANIHCFNVESAAELELLNLVAGELDREAPIAIRVNPDVDAQTHPYISTGLKDNKF 171
Query: 136 GIMPNQTKDFVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKL 186
G+ + + + + G+ C + P + LL+++ ++
Sbjct: 172 GVDITKAPALYQRAAELPHIKILGIDCHIGSQLTKLDPFEAALERVLKLLAQLQEHGIEI 231
Query: 187 TKLSMG 192
L +G
Sbjct: 232 HHLDLG 237
>gi|257469535|ref|ZP_05633627.1| Serine racemase [Fusobacterium ulcerans ATCC 49185]
gi|317063779|ref|ZP_07928264.1| serine racemase [Fusobacterium ulcerans ATCC 49185]
gi|313689455|gb|EFS26290.1| serine racemase [Fusobacterium ulcerans ATCC 49185]
Length = 369
Score = 41.6 bits (97), Expect = 0.076, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ + A +++ I + I V++G + + G+ ++ +F + L + G
Sbjct: 107 LDNLEAAKMINDMAIAAGVVVSYTIIVDSG--LHRFGLPVDKIVEFADKLKDMKGLKLRG 164
Query: 160 LMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRD--FELA-IASGAT 206
L P + + + IA EC+ + D +EL I SG+T
Sbjct: 165 LSTHPGHVYSATCENEVPKYIADECQTIAAAKKYMNDAGYELEYITSGST 214
>gi|118616650|ref|YP_904982.1| alanine racemase [Mycobacterium ulcerans Agy99]
gi|166969420|sp|A0PME2|ALR_MYCUA RecName: Full=Alanine racemase
gi|118568760|gb|ABL03511.1| alanine racemase, Alr [Mycobacterium ulcerans Agy99]
Length = 388
Score = 41.6 bits (97), Expect = 0.077, Method: Composition-based stats.
Identities = 39/240 (16%), Positives = 85/240 (35%), Gaps = 41/240 (17%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKI-RVALSCGQVIFAEN 56
++ + +++ +++ S ++AV K + + R AL+ G V
Sbjct: 22 AIAHNVRLLRER-----------AGSAQVMAVVKADGYGHGATAVARTALAAGAVELGVA 70
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE-TVSREKTASLLSLEMIK 115
+ EA + L + + +L ++ +S + +
Sbjct: 71 SVDEALTLRADGITAPVLAW-----LHAPGMDFGPALAADVQIAISSIRQLDEALDAARR 125
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK---YQLNVEGLMC-IPPAMGNPK 171
V ++++TG + ++G+ P + V RQ + + GLM + A K
Sbjct: 126 TGTTATVTVKIDTG--LNRNGVAPALYPEMVTRLRQAVAEDAIRLRGLMTHMVHADAPEK 183
Query: 172 PHFYLLSEIARECKLTKLSMGMTRDFELAIASGA--TS---------VRIGSGIFGERPC 220
P + S+ ++ + + FE+A S + T VR G ++G P
Sbjct: 184 PINDIQSQRFKQ--MLDHARDQGVRFEVAHLSNSSATMARPDLTLDLVRPGIAVYGLSPV 241
>gi|114778627|ref|ZP_01453443.1| probable diaminopimelate decarboxylase protein [Mariprofundus
ferrooxydans PV-1]
gi|114551092|gb|EAU53653.1| probable diaminopimelate decarboxylase protein [Mariprofundus
ferrooxydans PV-1]
Length = 386
Score = 41.6 bits (97), Expect = 0.077, Method: Composition-based stats.
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 12/82 (14%)
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ-----------KSGIM 138
+ I + A L + + + +++N ++I K GI
Sbjct: 96 VAHGIRTIH-IESLTEAHRLQAICTELGKNQDILLRINADFDIHEAQTTFSGGSKKFGID 154
Query: 139 PNQTKDFVILCRQKYQLNVEGL 160
+ DF+ L GL
Sbjct: 155 EEKLADFLPQILALDHLRFRGL 176
>gi|311109535|ref|YP_003982388.1| diaminopimelate decarboxylase [Achromobacter xylosoxidans A8]
gi|310764224|gb|ADP19673.1| diaminopimelate decarboxylase 2 [Achromobacter xylosoxidans A8]
Length = 430
Score = 41.6 bits (97), Expect = 0.078, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V E LS PV ++VN + K GI D
Sbjct: 137 VESEAELRRLSEVAHGMGLRAPVSLRVNPDVDAQTHPYISTGLKENKFGIAIESALDVYR 196
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
+ L++ G+ C I + + P+F L ++
Sbjct: 197 SAQSLPGLDIVGVDCHIGSQLTDISPYFDALEKLLD 232
>gi|237728700|ref|ZP_04559181.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226909322|gb|EEH95240.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 387
Score = 41.6 bits (97), Expect = 0.078, Method: Composition-based stats.
Identities = 34/162 (20%), Positives = 55/162 (33%), Gaps = 22/162 (13%)
Query: 80 GSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----I 132
G L Q S V++ V+ + T+ + A +S +K V ++V +
Sbjct: 103 GHLVQIPSRLVNDAVAQGTEVITLFSLEKAREVSAAAVKAGCEQNVMLKVYDKDDFLYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-------PKPHFYLLSEIAREC- 184
Q+SG D V R+ L + GL P + + P P+ + L R+
Sbjct: 163 QESGFPLMYLTDVVNEIRRLPGLRLSGLTHFPCLLWDENSAQTMPTPNLHTLVNARRQLA 222
Query: 185 -------KLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+L S L G T G + G P
Sbjct: 223 EAGIAIEQLNAPSASSCSSLPLLAEYGVTHAEPGHALTGTIP 264
>gi|187777116|ref|ZP_02993589.1| hypothetical protein CLOSPO_00661 [Clostridium sporogenes ATCC
15579]
gi|187774044|gb|EDU37846.1| hypothetical protein CLOSPO_00661 [Clostridium sporogenes ATCC
15579]
Length = 402
Score = 41.6 bits (97), Expect = 0.079, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 8/93 (8%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKYQLNV 157
+VS K A LS + + + V I VN + + G +P + + + + +
Sbjct: 111 SVSSYKYAEQLSKKAQQLGK--DVKIHVNIDTGMGRLGFLPTEENLEKIYQISKLPNIIF 168
Query: 158 EGLMCIPPAMGN-----PKPHFYLLSEIARECK 185
EGL F + + K
Sbjct: 169 EGLFSHFSTADEKNKDYTNEQFKKFLDFYYKLK 201
>gi|325833467|ref|ZP_08165916.1| alanine racemase [Eggerthella sp. HGA1]
gi|325485391|gb|EGC87860.1| alanine racemase [Eggerthella sp. HGA1]
Length = 467
Score = 41.6 bits (97), Expect = 0.080, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 33/234 (14%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKK-IRVALSCGQVIFAEN 56
++ + KQ+I+N V L+AV K + + + AL+ G
Sbjct: 103 AIRHNTSAVKQRIDN----------GVRLMAVVKADGYGHGAVRCAKTALNSGADYLGVA 152
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS-EIVSLFDVIETVSREKTASLLSLEMIK 115
+ EA + L + L Q + + ++ + V+ +V + A +
Sbjct: 153 TVNEAIELREALVNAPILVLS-----QPPETAIPLLLAYKVMPSVYTSEFAIQYAEAADA 207
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPHF 174
P ++ VNTG + G+ ++ +F+ L++ G A F
Sbjct: 208 YGVRAPYHLAVNTGM--NRIGVRHDEVVEFMGQVSFHRALDLVGTFTHFATADSAETLDF 265
Query: 175 YLLSEIARECKLTKLSMGMTRDFELAIASGA---------TSVRIGSGIFGERP 219
+ + E + G+ A S A VR+G ++G P
Sbjct: 266 QIQVKRFIEAVTALRTAGVNPGIVHAANSAAAIRYPDVQFDMVRLGIAMYGLHP 319
>gi|255535394|ref|YP_003095765.1| amino acid racemase [Flavobacteriaceae bacterium 3519-10]
gi|255341590|gb|ACU07703.1| amino acid racemase [Flavobacteriaceae bacterium 3519-10]
Length = 371
Score = 41.6 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 32/156 (20%), Positives = 53/156 (33%), Gaps = 26/156 (16%)
Query: 78 FIGSLQSNKVSEIVSLFDV-----IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
+I V +IV DV I+T+ + LS E ++Q + V + V G
Sbjct: 76 YIKPPAKRLVKDIVEFADVSFNTEIQTL------AALSDEAVRQDKVHRVVLMVEMG--E 127
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIAR---------E 183
+ GIM F + L V GL + P L + +
Sbjct: 128 LREGIMVQNMVRFYAQVSEMPNLEVVGLGTNLNCLNGILPDREKLIALKQCKEVLEEKFG 187
Query: 184 CKLTKLSMGMTRD----FELAIASGATSVRIGSGIF 215
++ +S G + F + G R+G +F
Sbjct: 188 HRIPFISGGSSVTVPLIFRGEVPPGINHFRVGETLF 223
>gi|229845773|ref|ZP_04465885.1| diaminopimelate decarboxylase [Haemophilus influenzae 7P49H1]
gi|229810777|gb|EEP46494.1| diaminopimelate decarboxylase [Haemophilus influenzae 7P49H1]
Length = 415
Score = 41.6 bits (97), Expect = 0.081, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 24/117 (20%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKD 144
+E+VS K ++ + + P+ ++VN + K G+ N+ ++
Sbjct: 124 VESVSELKH---INQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEARE 180
Query: 145 FVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ + L L +G
Sbjct: 181 VYKLASTLPNIKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLG 237
>gi|227818945|ref|YP_002822916.1| alanine racemase, catabolic [Sinorhizobium fredii NGR234]
gi|227337944|gb|ACP22163.1| alanine racemase, catabolic [Sinorhizobium fredii NGR234]
Length = 377
Score = 41.6 bits (97), Expect = 0.084, Method: Composition-based stats.
Identities = 39/199 (19%), Positives = 61/199 (30%), Gaps = 30/199 (15%)
Query: 33 VSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS 92
VSK + G F L EA K PL D + + LQ +
Sbjct: 62 VSK--------ALHAQGCRHFFVAHLPEAL-KLRPLLPN-DTHIFVLNGLQPG-AEITCT 110
Query: 93 LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK 152
DV+ ++ + S K R P +Q +TG + G+ P + +
Sbjct: 111 NADVVPVLNSLEQFRRWSFTAEKLGRVFPAVLQFDTGM--SRLGVPPQERTALAAELKGC 168
Query: 153 YQLNVEGLMCIPPAMGNPKP-----HFYLLSEIARE-CKLTKL---SMG--MTRDFELAI 201
L + +M + IA E L S G + D+ +
Sbjct: 169 GNLEILFIMSHVACADEADKKQNADQLAEMRVIAAEFAGLDVCFANSGGVFLGGDYHGVL 228
Query: 202 ASGATSVRIGSGIFGERPC 220
A R G ++G P
Sbjct: 229 A------RPGIALYGGAPT 241
>gi|91227530|ref|ZP_01261867.1| diaminopimelate decarboxylase [Vibrio alginolyticus 12G01]
gi|91188554|gb|EAS74846.1| diaminopimelate decarboxylase [Vibrio alginolyticus 12G01]
Length = 417
Score = 41.6 bits (97), Expect = 0.084, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++ D
Sbjct: 125 VESEPELERLNKVAGELGVIAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPDVYK 184
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
+ LNV+G+ C I P + L+ ++ A+ + L +G
Sbjct: 185 FAQSLPNLNVQGIDCHIGSQLTNIDPFIDATDRLLALIDDLKAQGINIRHLDVG 238
>gi|312115134|ref|YP_004012730.1| diaminopimelate decarboxylase [Rhodomicrobium vannielii ATCC 17100]
gi|311220263|gb|ADP71631.1| diaminopimelate decarboxylase [Rhodomicrobium vannielii ATCC 17100]
Length = 422
Score = 41.6 bits (97), Expect = 0.085, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 16/104 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E LS + R + ++N TG K G+ +
Sbjct: 124 VESEAELRALSQVASGRGRTARIAFRINPDVDAKTHAKISTGKSEHKFGVSWRDARALYA 183
Query: 148 LCRQKYQLNVEGL-MCIP---PAMGNPKPHFYLLSEIARECKLT 187
L R L+V G+ M I M + F L++ + + +
Sbjct: 184 LARDLPGLDVAGVHMHIGSQITHMEPFRDAFDLMANLVEDLRRD 227
>gi|145630464|ref|ZP_01786244.1| diaminopimelate decarboxylase [Haemophilus influenzae R3021]
gi|144983854|gb|EDJ91296.1| diaminopimelate decarboxylase [Haemophilus influenzae R3021]
Length = 415
Score = 41.6 bits (97), Expect = 0.085, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 24/117 (20%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKD 144
+E+VS K ++ + + P+ ++VN + K G+ N+ ++
Sbjct: 124 VESVSELKH---INQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEARE 180
Query: 145 FVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ + L L +G
Sbjct: 181 VYKLASTLPNIKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLG 237
>gi|82701675|ref|YP_411241.1| diaminopimelate decarboxylase [Nitrosospira multiformis ATCC 25196]
gi|82409740|gb|ABB73849.1| diaminopimelate decarboxylase [Nitrosospira multiformis ATCC 25196]
Length = 418
Score = 41.6 bits (97), Expect = 0.085, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V E L+ + + PV ++VN + K GI ++ +
Sbjct: 127 VESEAELHGLNRVAGEMGKVAPVSLRVNPDVDAKTHPYISTGLKENKFGIPFDEAEALYA 186
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
+ + V GL C + P + K LL + A+ ++ L +G
Sbjct: 187 SAQALGNVRVAGLDCHIGSQLTELAPFIETCKKMLGLLDRLEAQGLEIEHLDLG 240
>gi|68249326|ref|YP_248438.1| diaminopimelate decarboxylase [Haemophilus influenzae 86-028NP]
gi|68057525|gb|AAX87778.1| diaminopimelate decarboxylase [Haemophilus influenzae 86-028NP]
Length = 415
Score = 41.6 bits (97), Expect = 0.085, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 24/117 (20%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKD 144
+E+VS K ++ + + P+ ++VN + K G+ N+ ++
Sbjct: 124 VESVSELKH---INQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEARE 180
Query: 145 FVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ + L L +G
Sbjct: 181 VYKLASTLPNIKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLG 237
>gi|254230109|ref|ZP_04923505.1| diaminopimelate decarboxylase [Vibrio sp. Ex25]
gi|262392884|ref|YP_003284738.1| diaminopimelate decarboxylase [Vibrio sp. Ex25]
gi|151937354|gb|EDN56216.1| diaminopimelate decarboxylase [Vibrio sp. Ex25]
gi|262336478|gb|ACY50273.1| diaminopimelate decarboxylase [Vibrio sp. Ex25]
Length = 417
Score = 41.6 bits (97), Expect = 0.085, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++ D
Sbjct: 125 VESEPELERLNKVAGELGVIAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPDVYK 184
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
+ LNV+G+ C I P + L+ ++ A+ + L +G
Sbjct: 185 FAQSLPNLNVQGIDCHIGSQLTNIDPFIDATDRLLALIDDLKAQGINIRHLDVG 238
>gi|319775330|ref|YP_004137818.1| diaminopimelate decarboxylase, PLP-binding [Haemophilus influenzae
F3047]
gi|329122674|ref|ZP_08251252.1| diaminopimelate decarboxylase [Haemophilus aegyptius ATCC 11116]
gi|317449921|emb|CBY86133.1| diaminopimelate decarboxylase, PLP-binding [Haemophilus influenzae
F3047]
gi|327472548|gb|EGF17978.1| diaminopimelate decarboxylase [Haemophilus aegyptius ATCC 11116]
Length = 415
Score = 41.6 bits (97), Expect = 0.086, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 24/117 (20%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKD 144
+E+VS K ++ + + P+ ++VN + K G+ N+ ++
Sbjct: 124 VESVSELKH---INQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEARE 180
Query: 145 FVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ + L L +G
Sbjct: 181 VYKLASTLPNIKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLG 237
>gi|301169445|emb|CBW29045.1| diaminopimelate decarboxylase, PLP-binding [Haemophilus influenzae
10810]
Length = 415
Score = 41.6 bits (97), Expect = 0.086, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 24/117 (20%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKD 144
+E+VS K ++ + + P+ ++VN + K G+ N+ ++
Sbjct: 124 VESVSELKH---INQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEARE 180
Query: 145 FVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ + L L +G
Sbjct: 181 VYKLASTLPNIKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLG 237
>gi|260583176|ref|ZP_05850956.1| diaminopimelate decarboxylase [Haemophilus influenzae NT127]
gi|260093794|gb|EEW77702.1| diaminopimelate decarboxylase [Haemophilus influenzae NT127]
Length = 415
Score = 41.6 bits (97), Expect = 0.086, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 24/117 (20%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKD 144
+E+VS K ++ + + P+ ++VN + K G+ N+ ++
Sbjct: 124 VESVSELKH---INQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEARE 180
Query: 145 FVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ + L L +G
Sbjct: 181 VYKLASTLPNIKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLG 237
>gi|16272667|ref|NP_438885.1| diaminopimelate decarboxylase [Haemophilus influenzae Rd KW20]
gi|260579819|ref|ZP_05847649.1| diaminopimelate decarboxylase [Haemophilus influenzae RdAW]
gi|1169235|sp|P44316|DCDA_HAEIN RecName: Full=Diaminopimelate decarboxylase; Short=DAP
decarboxylase
gi|1573731|gb|AAC22385.1| diaminopimelate decarboxylase (lysA) [Haemophilus influenzae Rd
KW20]
gi|260093103|gb|EEW77036.1| diaminopimelate decarboxylase [Haemophilus influenzae RdAW]
Length = 415
Score = 41.6 bits (97), Expect = 0.086, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 24/117 (20%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKD 144
+E+VS K ++ + + P+ ++VN + K G+ N+ ++
Sbjct: 124 VESVSELKH---INQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEARE 180
Query: 145 FVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ + L L +G
Sbjct: 181 VYKLASTLPNIKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLG 237
>gi|125975179|ref|YP_001039089.1| alanine racemase [Clostridium thermocellum ATCC 27405]
gi|256003157|ref|ZP_05428149.1| alanine racemase [Clostridium thermocellum DSM 2360]
gi|281418399|ref|ZP_06249418.1| alanine racemase [Clostridium thermocellum JW20]
gi|125715404|gb|ABN53896.1| alanine racemase [Clostridium thermocellum ATCC 27405]
gi|255992848|gb|EEU02938.1| alanine racemase [Clostridium thermocellum DSM 2360]
gi|281407483|gb|EFB37742.1| alanine racemase [Clostridium thermocellum JW20]
gi|316939345|gb|ADU73379.1| alanine racemase [Clostridium thermocellum DSM 1313]
Length = 391
Score = 41.6 bits (97), Expect = 0.086, Method: Composition-based stats.
Identities = 40/231 (17%), Positives = 84/231 (36%), Gaps = 32/231 (13%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKI-RVALSCGQVIFAEN 56
++ + ++ ++ ++ V ++ V K +I R L G A +
Sbjct: 18 NIAHNVKEIRRIVDK----------KVEIMGVVKADAYGHGVMEIARTLLENGVTRLAVS 67
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
L EA + K + L + +++ ++ +++ DV +TV A LS +K
Sbjct: 68 MLDEAIQLRQNGIKVPILILSYTDPVRAEEI--VLN--DVTQTVFSHDLAEALSEAAVKH 123
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP--- 172
R + ++I+++TG + + G MP V+ + + +EGL +
Sbjct: 124 HRNVKIHIKIDTG--MTRVGFMPGYSAVKNVVQISKLPGIIIEGLFTHFASADEADKSYT 181
Query: 173 --HFYLLSEIARECKLTKLSMGMTRDFELAI-----ASGATSVRIGSGIFG 216
F I E + + + A VR G ++G
Sbjct: 182 YMQFERFMSIVGELNRIGVYIPVKHVCNSAALIEFPEMHLNMVRPGIALYG 232
>gi|332524336|ref|ZP_08400557.1| diaminopimelate decarboxylase [Rubrivivax benzoatilyticus JA2]
gi|332107666|gb|EGJ08890.1| diaminopimelate decarboxylase [Rubrivivax benzoatilyticus JA2]
Length = 424
Score = 41.6 bits (97), Expect = 0.087, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 13/104 (12%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L+ R PV ++VN + K GI ++
Sbjct: 130 VESLGELERLAEVAAAMGRRAPVSLRVNPDVDAGTHPYISTGLKDNKFGIPHDEALAVYR 189
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIARECKLTKLS 190
L V G+ C I + +P+ L + + +
Sbjct: 190 RAAALPSLQVVGIDCHIGSQITQLEPYLDALGRVLDLVEAVEAE 233
>gi|317490383|ref|ZP_07948867.1| alanine racemase [Eggerthella sp. 1_3_56FAA]
gi|316910518|gb|EFV32143.1| alanine racemase [Eggerthella sp. 1_3_56FAA]
Length = 467
Score = 41.6 bits (97), Expect = 0.089, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 33/234 (14%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKK-IRVALSCGQVIFAEN 56
++ + KQ+I+N V L+AV K + + + AL+ G
Sbjct: 103 AIRHNTSAVKQRIDN----------GVRLMAVVKADGYGHGAVRCAKTALNSGADYLGVA 152
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS-EIVSLFDVIETVSREKTASLLSLEMIK 115
+ EA + L + L Q + + ++ + V+ +V + A +
Sbjct: 153 TVNEAIELREALVNAPILVLS-----QPPETAIPLLLAYKVMPSVYTSEFAIQYAEAADA 207
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPHF 174
P ++ VNTG + G+ ++ +F+ L++ G A F
Sbjct: 208 YGVRAPYHLAVNTGM--NRIGVRHDEVVEFMGQVSFHRALDLVGTFTHFATADSAETLDF 265
Query: 175 YLLSEIARECKLTKLSMGMTRDFELAIASGA---------TSVRIGSGIFGERP 219
+ + E + G+ A S A VR+G ++G P
Sbjct: 266 QIQVKRFIEAVTALRTAGVNPGIVHAANSAAAIRYPDVQFDMVRLGIAMYGLHP 319
>gi|328541749|ref|YP_004301858.1| diaminopimelate decarboxylase [polymorphum gilvum SL003B-26A1]
gi|326411501|gb|ADZ68564.1| Diaminopimelate decarboxylase [Polymorphum gilvum SL003B-26A1]
Length = 424
Score = 41.6 bits (97), Expect = 0.090, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 16/102 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E LS ++ R V +++N TG K GI + +
Sbjct: 124 VESEPELVQLSRVATEKGRTARVSLRINPDVDARTHKKISTGKAENKFGIPWQRARALYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIARECK 185
+ + V GL M I + +P F L ++ R+ +
Sbjct: 184 EAGELPGIEVTGLDMHIGSQITELEPFDAAFARLGDLVRDLR 225
>gi|303231043|ref|ZP_07317785.1| alanine racemase [Veillonella atypica ACS-049-V-Sch6]
gi|302514307|gb|EFL56307.1| alanine racemase [Veillonella atypica ACS-049-V-Sch6]
Length = 370
Score = 41.6 bits (97), Expect = 0.090, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 12/137 (8%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
E+V+ + I V L+ + V + V+TG + GI P +F+
Sbjct: 90 ELVADTNSIPAVCESTDLEALNKVADNHDMIIRVAVAVDTGM--HRIGIKPENAVEFIKR 147
Query: 149 CRQKYQLNVEGL---MCIPPAMGNPKPH--FYLLSEIARECKLTKLSMGMTRDFELAIAS 203
L V+G M A H ++ E + + D+ ++A+
Sbjct: 148 IESYPNLAVDGFFSHMSNADAADQSHAHGQAQKFHKMVDEIRAFR----PDADYRFSLAN 203
Query: 204 GATSVRIGSGIF-GERP 219
A + + +F RP
Sbjct: 204 SAGLLSVKDSLFTDARP 220
>gi|91790640|ref|YP_551592.1| alanine racemase-like protein [Polaromonas sp. JS666]
gi|91699865|gb|ABE46694.1| alanine racemase-like protein [Polaromonas sp. JS666]
Length = 380
Score = 41.6 bits (97), Expect = 0.090, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 21/134 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN--QTKDFVILCRQKYQLNV 157
V + A L+ E I+ L V I+++ +SG+ P+ Q L V
Sbjct: 110 VDSVEMALQLNPERIQGDDRLDVLIEIDCDG--HRSGVQPDSPALLAIAQAL-QSQGLAV 166
Query: 158 EGLMCIP----------PAMGNPKPHFYLLSEIARECKL-----TKLSMGMTRDFELAIA 202
G+M + + + AR + +S+G T A
Sbjct: 167 GGVMTHAGDSYICRSTEAIVAMAEQERAGAVQAARRLRAAGHACPVVSVGSTPTALFAEN 226
Query: 203 S-GATSVRIGSGIF 215
G T VR G +F
Sbjct: 227 LDGVTEVRAGVFVF 240
>gi|313893858|ref|ZP_07827424.1| alanine racemase [Veillonella sp. oral taxon 158 str. F0412]
gi|313441422|gb|EFR59848.1| alanine racemase [Veillonella sp. oral taxon 158 str. F0412]
Length = 374
Score = 41.6 bits (97), Expect = 0.091, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 12/137 (8%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
E+V+ + I V L + + + V+TG + GI P +F+
Sbjct: 94 ELVADTNSIPAVCESTDLDALDKVADNHDMIIRIAVAVDTGM--HRIGIKPEDAVEFIKR 151
Query: 149 CRQKYQLNVEGL---MCIPPAMGNPKPHFYLLS--EIARECKLTKLSMGMTRDFELAIAS 203
L V+G M A H + + E K + D+ ++A+
Sbjct: 152 VESYENLEVDGFFSHMSNADAADQTHAHSQAMKFHRMVDEIKAFR----PNADYRFSLAN 207
Query: 204 GATSVRIGSGIF-GERP 219
A + + +F RP
Sbjct: 208 SAGLLSVKDSLFTDARP 224
>gi|330981825|gb|EGH79928.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. aptata str.
DSM 50252]
Length = 402
Score = 41.6 bits (97), Expect = 0.092, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------ 127
G L S+ S +++ + I + + L + R PV++++N
Sbjct: 99 GKLDSDLRSALLNKVEAIH-LESLNEIARLQQLAEQAGRVQPVFLRINPQLPAAQSSRLA 157
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
GI + V L ++G
Sbjct: 158 MAGTATPFGIDEADLAEAVRRVDNASHLMLKGF 190
>gi|290999531|ref|XP_002682333.1| predicted protein [Naegleria gruberi]
gi|284095960|gb|EFC49589.1| predicted protein [Naegleria gruberi]
Length = 284
Score = 41.2 bits (96), Expect = 0.092, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 19/140 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVE 158
V LL M +S+ L + ++ N G + G+ +Q D V + + LN +
Sbjct: 13 VDNCGVIELLDKLMDGESKKLNLVVEYNVGQ--NRCGVESQDQVLDLVKIINESRHLNFK 70
Query: 159 GLMCIPPAMGNPKPH-------------FYLLSEIARE--CKLTKLSMGMTRDFELAIAS 203
G+ C + + K + L + E K+ ++ G T FE + S
Sbjct: 71 GIQCYNGSNQHIKSYEERKLATQKVVEKTRSLVDFLEEKGIKVEYVTGGGTGTFEFEMNS 130
Query: 204 GA-TSVRIGSGIFGERPCQT 222
G T ++ GS +FG+ +
Sbjct: 131 GVFTEIQPGSWLFGDADYGS 150
>gi|33864030|ref|NP_895590.1| alanine racemase [Prochlorococcus marinus str. MIT 9313]
gi|33635614|emb|CAE21938.1| putative Alanine racemase [Prochlorococcus marinus str. MIT 9313]
Length = 398
Score = 41.2 bits (96), Expect = 0.093, Method: Composition-based stats.
Identities = 43/230 (18%), Positives = 74/230 (32%), Gaps = 34/230 (14%)
Query: 14 IENSAILAKRPK-DSVSLVAVSK----MVDSKKI-RVALSCGQVIFAENKLQEAKKKWIP 67
+E + +R +S +L+AV K + + R AL G LQE +
Sbjct: 38 VEANCRSLRRHLCESCALMAVVKADGYGHGALTVARAALQGGAKSLGVATLQEGIELRQA 97
Query: 68 LRKEWDVQLRFIGSL-QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
+ L G+L S + + ++ T+S + A L R IQ+
Sbjct: 98 GHNAPVLVL---GNLTHSEDLKACLHW-QLMPTLSSMREALLCQNLADGSGRQFR--IQL 151
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC------------IPPAMGNPKPHF 174
+ + G + V QL ++G+ + HF
Sbjct: 152 KIDTGMTRLGCELKEAPMLVEAIGHLNQLELKGIYSHLALADGDLQGKAAMVTDQQQQHF 211
Query: 175 Y-LLSEIARECKLTKL----SMGMTRDFELAIASGATSVRIGSGIFGERP 219
+L + + S G RD L VR+G ++G P
Sbjct: 212 ETVLRTLPEQHNGFTRHLANSAGTLRDRGL----HYDMVRVGLALYGHSP 257
>gi|218549113|ref|YP_002382904.1| alanine racemase [Escherichia fergusonii ATCC 35469]
gi|218356654|emb|CAQ89280.1| alanine racemase 2, PLP-binding [Escherichia fergusonii ATCC 35469]
gi|324113955|gb|EGC07929.1| alanine racemase [Escherichia fergusonii B253]
gi|325497535|gb|EGC95394.1| alanine racemase [Escherichia fergusonii ECD227]
Length = 356
Score = 41.2 bits (96), Expect = 0.095, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 23/138 (16%)
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
L + + + K +L+ + + L +Y++VN+G + G P + R
Sbjct: 95 RLTTSVHSNWQLK-----ALQNARLNAPLDIYVKVNSGM--NRLGFPPEKIPTVWQQLRG 147
Query: 152 KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT----- 206
+ LM +P+ L ++ + S GM LA ++ AT
Sbjct: 148 MSNVGEMTLMSHFADAEHPEGIVQALEKVEQ------ASEGMECRRSLANSA-ATLWHPQ 200
Query: 207 ----SVRIGSGIFGERPC 220
VR G ++G P
Sbjct: 201 AHFDWVRPGIILYGASPT 218
>gi|169608606|ref|XP_001797722.1| hypothetical protein SNOG_07385 [Phaeosphaeria nodorum SN15]
gi|160701681|gb|EAT84851.2| hypothetical protein SNOG_07385 [Phaeosphaeria nodorum SN15]
Length = 708
Score = 41.2 bits (96), Expect = 0.095, Method: Composition-based stats.
Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 37/159 (23%)
Query: 86 KVSEIVSLFDVIET----VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
KV + LF ++ V E A ++ E+ K + + ++ + ++GI P +
Sbjct: 436 KVKRLAELFKKHKSIRIVVDSEVGARAINDELKKSGVDGRIAVLIDLDVGLHRTGIQPGE 495
Query: 142 -TKDFVILCRQKYQLNVEGL-----------------------MCIPPAMGNPKPHFYLL 177
Q + + G+ M I + N L
Sbjct: 496 PALKLAACIAQLDHMALIGVQGYEGHLQHVHSFEERKAKCLESMQILTSTAN------AL 549
Query: 178 SEIARECKLTKLSMGMTRDFELAIAS-GATSVRIGSGIF 215
E ++ ++ G T E I+ G V+ GS IF
Sbjct: 550 RE--AGHQIDVVTTGGTGTAEFCISVPGVNEVQPGSFIF 586
>gi|153833762|ref|ZP_01986429.1| D-serine deaminase [Vibrio harveyi HY01]
gi|148869934|gb|EDL68897.1| D-serine deaminase [Vibrio harveyi HY01]
Length = 423
Score = 41.2 bits (96), Expect = 0.095, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 9/97 (9%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVE 158
V + L + L V I+ G E + G + L Q+ L ++
Sbjct: 147 VDSSRNVKALERAFAEHQLPLNVLIE--FGVEGGRCGCRNQQDVVELATLIHQQPHLTLK 204
Query: 159 GLMCI------PPAMGNPKPHFYLLSEIARECKLTKL 189
G+ A + + EIA + + KL
Sbjct: 205 GIEVYEGVIHGDNAEQDIRDFLNTTLEIAAQLQSDKL 241
>gi|330942902|gb|EGH45399.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. pisi str.
1704B]
Length = 402
Score = 41.2 bits (96), Expect = 0.096, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------ 127
G L S+ S +++ + I + + L + R PV++++N
Sbjct: 99 GKLDSDLRSALLNKVEAIH-LESLNEIARLQQLAEQAGRVQPVFLRINPQLPAAQSSRLA 157
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
GI + V L ++G
Sbjct: 158 MAGTATPFGIDEADLAEAVRRVDNASHLMLKGF 190
>gi|227502721|ref|ZP_03932770.1| alanine racemase [Corynebacterium accolens ATCC 49725]
gi|227076451|gb|EEI14414.1| alanine racemase [Corynebacterium accolens ATCC 49725]
Length = 365
Score = 41.2 bits (96), Expect = 0.098, Method: Composition-based stats.
Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 27/176 (15%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIFAEN 56
++ + +++ K+KI V L+ V K ++++ L G
Sbjct: 10 AIAHNVRLIKEKI----------GPDVKLMCVVKADAYGHGAERVVPVMLEAGADSIGVA 59
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE-TVSREKTASLLSLEMIK 115
L EA + + QS++V E L I+ V+ A L ++
Sbjct: 60 TLTEAVQLRRMGVDSPIAAWIW----QSDQVLEEA-LASGIQIAVNSPAQAQKL----VE 110
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171
+YI+V TG +SG+ + L R+ + V GLM +P
Sbjct: 111 AEIPAEIYIKVETGM--HRSGVDKADWDEVFALLREAPHITVLGLMSHFACADDPD 164
>gi|282910112|ref|ZP_06317920.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282326178|gb|EFB56483.1| pyridoxal-dependent decarboxylase [Staphylococcus aureus subsp.
aureus WW2703/97]
Length = 228
Score = 41.2 bits (96), Expect = 0.099, Method: Composition-based stats.
Identities = 9/83 (10%), Positives = 25/83 (30%), Gaps = 12/83 (14%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT-----------GYEIQKSGI 137
+ I V L+ + + + + ++VN + GI
Sbjct: 103 AVSEGVQRIH-VESMHELQRLNAILEDEDKTQHILLRVNLAGPFPNATLHMAGRPTQFGI 161
Query: 138 MPNQTKDFVILCRQKYQLNVEGL 160
++ D + ++++G
Sbjct: 162 SEDEVDDVIEAALAMPNIHLDGF 184
>gi|82749837|ref|YP_415578.1| diaminopimelate decarboxylase protein [Staphylococcus aureus RF122]
gi|82655368|emb|CAI79750.1| probable diaminopimelate decarboxylase protein [Staphylococcus
aureus RF122]
Length = 400
Score = 41.2 bits (96), Expect = 0.099, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 38/115 (33%), Gaps = 16/115 (13%)
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSL-FDVIETVSREKTASLLSLEMIKQ 116
Q K + + + F G ++++ + VS I V L+ + +
Sbjct: 73 QGEIAKGLAFKPANHII--FGGPGKTDEELRYAVSEGVQRIH-VESMHELQRLNAILEDE 129
Query: 117 SRFLPVYIQVNT-----------GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ + ++VN + GI + D + +++++G
Sbjct: 130 DKTQHILLRVNLAGPFPNATLHMAGRPTQFGISEDDVDDVIEAALAMPKIHLDGF 184
>gi|257792515|ref|YP_003183121.1| alanine racemase [Eggerthella lenta DSM 2243]
gi|257476412|gb|ACV56732.1| alanine racemase [Eggerthella lenta DSM 2243]
Length = 441
Score = 41.2 bits (96), Expect = 0.100, Method: Composition-based stats.
Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 33/234 (14%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKK-IRVALSCGQVIFAEN 56
++ + KQ+I+N V L+AV K + + + AL+ G
Sbjct: 77 AIRHNTSAVKQRIDN----------GVRLMAVVKADGYGHGAVRCAKTALNSGADYLGVA 126
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS-EIVSLFDVIETVSREKTASLLSLEMIK 115
+ EA + L + L Q + + ++ + V+ +V + A +
Sbjct: 127 TVNEAIELREALVNAPILVLS-----QPPETAIPLLLAYKVMPSVYTSEFAIQYAEAADA 181
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPHF 174
P ++ VNTG + G+ ++ +F+ L++ G A F
Sbjct: 182 YGVRAPYHLAVNTGM--NRIGVRHDEVVEFMGQVSFHRALDLVGTFTHFATADSAETLDF 239
Query: 175 YLLSEIARECKLTKLSMGMTRDFELAIASGA---------TSVRIGSGIFGERP 219
+ + E + G+ A S A VR+G ++G P
Sbjct: 240 QIQVKRFIEAVTALRTAGVNPGIVHAANSAAAIRYPDVQFDMVRLGIAMYGLHP 293
>gi|325271631|ref|ZP_08138133.1| diaminopimelate decarboxylase [Pseudomonas sp. TJI-51]
gi|324103235|gb|EGC00580.1| diaminopimelate decarboxylase [Pseudomonas sp. TJI-51]
Length = 415
Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 41/146 (28%), Gaps = 39/146 (26%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + + + PV ++VN + K GI + +
Sbjct: 124 VESTDELERLQVVAAEMGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEAIYV 183
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIAR-ECKLTKLSMG------ 192
Q L V G L I P + L+ +A L L +G
Sbjct: 184 RAAQLPNLEVVGVDCHIGSQLTTIDPFLDALDRLLVLVDRLAECGIHLRHLDLGGGVGVR 243
Query: 193 -------MTRDFELAIASGATSVRIG 211
+ D+ AI R+G
Sbjct: 244 YRDEQPPLVADYIKAIRE-----RVG 264
>gi|300696992|ref|YP_003747653.1| diaminopimelate decarboxylase protein (lysA) [Ralstonia
solanacearum CFBP2957]
gi|299073716|emb|CBJ53236.1| putative diaminopimelate decarboxylase protein (lysA) [Ralstonia
solanacearum CFBP2957]
Length = 413
Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 29/132 (21%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------------TGY 130
+ ++I V E L + R V ++VN G
Sbjct: 102 ALERGIELIH-VESELQLRRLDAVACRMGRCARVLLRVNPNPLSADSAGKRPQGTLTMGG 160
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLS-------EIAR 182
+ + GI + D + L R + V GL + H L+ + R
Sbjct: 161 QPTQFGIEEDAVPDLIRLARGLAGVEVVGLHLHALSNNLDADSHLALMRHYLALALRLRR 220
Query: 183 ECK--LTKLSMG 192
E L L++G
Sbjct: 221 EHGLTLDTLNVG 232
>gi|294625584|ref|ZP_06704209.1| diaminopimelate decarboxylase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292600104|gb|EFF44216.1| diaminopimelate decarboxylase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 398
Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 24/117 (20%)
Query: 87 VSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQ 133
+++ +L D + V L+ R +PV++++N G +
Sbjct: 107 LAQAAALPDCTVH-VESLSELERLAEVAAHAGRCVPVFLRMNIAVPGAQSTRLMMGGQPS 165
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEG----LMCIPPAMGNPKPHFYLLSEIARECKL 186
G+ P + + L + G LM + + L IA ++
Sbjct: 166 PFGLDPCDLHAAMQRLQASPSLRLTGFHFHLMS------HQRDATAQLHLIAAYLRI 216
>gi|144899443|emb|CAM76307.1| Diaminopimelate decarboxylase [Magnetospirillum gryphiswaldense
MSR-1]
Length = 421
Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 13/100 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E LS + +P+ ++VN TG + K GI + +
Sbjct: 126 VESEPELEALSKIAAARGIRMPIALRVNPDVDAGTHAKITTGKKENKFGIEWTRAHEVYN 185
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIARECKL 186
R + V G+ C I + + +P + +
Sbjct: 186 KARALPGIEVVGIACHIGSQLTDVEPFRQAFLRVRDLVAM 225
>gi|170747958|ref|YP_001754218.1| alanine racemase domain-containing protein [Methylobacterium
radiotolerans JCM 2831]
gi|170654480|gb|ACB23535.1| alanine racemase domain protein [Methylobacterium radiotolerans JCM
2831]
Length = 373
Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 10/133 (7%)
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKD 144
+++ + + V+ V LS +K L ++++ G + G+ P +
Sbjct: 104 RLAALATRARVLVCVDDLGNVDDLSAAAVKYGVTLECLVEIDVG--AGRCGVAPGEPAVA 161
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM--TRDFELAIA 202
L+ GL + + + + I TK ++ + + AI
Sbjct: 162 IAQKIAAAPGLSFAGLQAYQGKAQHVRDYGERKALIQTAIDETKRTVDLLKGVGLDCAIV 221
Query: 203 SGATSVRIGSGIF 215
+GA G+G F
Sbjct: 222 AGA-----GTGSF 229
>gi|145638478|ref|ZP_01794088.1| diaminopimelate decarboxylase [Haemophilus influenzae PittII]
gi|145272807|gb|EDK12714.1| diaminopimelate decarboxylase [Haemophilus influenzae PittII]
gi|309751609|gb|ADO81593.1| Diaminopimelate decarboxylase [Haemophilus influenzae R2866]
gi|309973776|gb|ADO96977.1| Diaminopimelate decarboxylase [Haemophilus influenzae R2846]
Length = 415
Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 24/117 (20%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKD 144
+E+VS K ++ + + P+ ++VN + K G+ N+ ++
Sbjct: 124 VESVSELKH---INQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEARE 180
Query: 145 FVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ + L L +G
Sbjct: 181 VYKLASTLPNIKITGMDCHIGSQLTELQPFLDAADRLIVLMEQLKEDGITLKHLDLG 237
>gi|82703234|ref|YP_412800.1| alanine racemase [Nitrosospira multiformis ATCC 25196]
gi|123544120|sp|Q2Y763|ALR_NITMU RecName: Full=Alanine racemase
gi|82411299|gb|ABB75408.1| alanine racemase [Nitrosospira multiformis ATCC 25196]
Length = 357
Score = 41.2 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 19/120 (15%)
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
LE +++ L V++++N+G + G P + + + + LM P
Sbjct: 109 LEAVRRRATLDVFLKLNSGM--NRLGFTPTEFPAALEHLKANPAVRQITLMTHFACADEP 166
Query: 171 KPHFYLLSEIARECKLTKLSMGMTRDF-------ELAI----ASGATSVRIGSGIFGERP 219
+ IA + + L+ G + AI + A VR G ++G P
Sbjct: 167 DRN----DSIAAQLQCFNLAAG--GRYMPRSLANSAAILRFPEAHADWVRPGIMLYGSSP 220
>gi|170758199|ref|YP_001785612.1| alanine racemase [Clostridium botulinum A3 str. Loch Maree]
gi|169405188|gb|ACA53599.1| alanine racemase [Clostridium botulinum A3 str. Loch Maree]
Length = 404
Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 9/108 (8%)
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQT 142
N I+ D+ +VS K A LS + + + V I VN + + G +P +
Sbjct: 97 CNNAETIIKN-DLEVSVSSYKYAEQLSKKAQQLGK--DVKIHVNIDTGMGRLGFLPTEEN 153
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGN-----PKPHFYLLSEIARECK 185
+ + + + EGL F + + +
Sbjct: 154 LEKIYQISKLPNIIFEGLFSHFSTADEKNKDYTNEQFKKFLDFYYKLR 201
>gi|303229989|ref|ZP_07316763.1| alanine racemase [Veillonella atypica ACS-134-V-Col7a]
gi|302515355|gb|EFL57323.1| alanine racemase [Veillonella atypica ACS-134-V-Col7a]
Length = 370
Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 12/137 (8%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
E+V+ + I V L+ + V + V+TG + GI P +F+
Sbjct: 90 ELVADTNSIPAVCESTDLEALNKVADNHDMIIRVAVAVDTGM--HRIGIKPEDAVEFIKR 147
Query: 149 CRQKYQLNVEGL---MCIPPAMGNPKPH--FYLLSEIARECKLTKLSMGMTRDFELAIAS 203
L V+G M A H + E + + D+ ++A+
Sbjct: 148 VESYPNLAVDGFFSHMSNADAADQSHAHGQAQKFHTMVDEIRAFR----PDADYRFSLAN 203
Query: 204 GATSVRIGSGIF-GERP 219
A + + +F RP
Sbjct: 204 SAGLLSVKDSLFTDARP 220
>gi|294506479|ref|YP_003570537.1| Alanine racemase [Salinibacter ruber M8]
gi|294342806|emb|CBH23584.1| Alanine racemase [Salinibacter ruber M8]
Length = 465
Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 7/136 (5%)
Query: 43 RVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR 102
R A G + +L E + L Q + +E +D+ TV
Sbjct: 112 RAAYEAGIRHYGVARLPEGVHLREAGHGGRILVLGAPAPTQLPRYAE----YDLDLTVPS 167
Query: 103 EKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC 162
A+ + ++ L V++ V+TG + G+ P+ + + + GL
Sbjct: 168 ADIAAAVVRHASPEA-PLRVHVTVDTGM--GRLGLAPDDVPAVMTRLADAPGVRLAGLWT 224
Query: 163 IPPAMGNPKPHFYLLS 178
P F
Sbjct: 225 HFATADAPGSSFAQTQ 240
>gi|120553431|ref|YP_957782.1| diaminopimelate decarboxylase [Marinobacter aquaeolei VT8]
gi|120323280|gb|ABM17595.1| diaminopimelate decarboxylase [Marinobacter aquaeolei VT8]
Length = 416
Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + L+ + P+ ++VN + K GI +
Sbjct: 124 VESDTELDRLNKVAGELGVKAPISLRVNPDVDAGTHPYISTGLKENKFGIDIAEAPAVYA 183
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L++ G L + P + L+ +A + ++ L MG
Sbjct: 184 RAASLPNLDIHGVDCHIGSQLTSVSPFLDALGRVLSLIDTLAEQGIRIRHLDMG 237
>gi|330973820|gb|EGH73886.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. aceris str.
M302273PT]
Length = 402
Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------ 127
G L S+ S +++ + I + + L + R PV++++N
Sbjct: 99 GKLDSDLRSALLNKVEAIH-LESLNEIARLQQLAEQAGRVQPVFLRINPQLPAAQSSRLA 157
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
GI + V L ++G
Sbjct: 158 MAGTATPFGIDEADLAEAVRRVDNASHLTLKGF 190
>gi|150389494|ref|YP_001319543.1| alanine racemase domain-containing protein [Alkaliphilus
metalliredigens QYMF]
gi|149949356|gb|ABR47884.1| alanine racemase domain protein [Alkaliphilus metalliredigens QYMF]
Length = 367
Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG + ++ + +V ++ + A +L+ + I + I +++G +++ GI
Sbjct: 86 IGEGKLKRLVALTEKAEVFCSIDSLEVAEILNEKAITEGIVFQCIILIDSG--LKRLGIA 143
Query: 139 PNQTKDFVILCRQKYQLNVEGL 160
P++ K F + + + G+
Sbjct: 144 PHEVKKFYNSLARLQGIKIVGV 165
>gi|152977874|ref|YP_001343503.1| diaminopimelate decarboxylase [Actinobacillus succinogenes 130Z]
gi|150839597|gb|ABR73568.1| diaminopimelate decarboxylase [Actinobacillus succinogenes 130Z]
Length = 415
Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 39/114 (34%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V ++ K + P+ ++VN + K G+ +Q ++
Sbjct: 124 VESIPELYRINEVAGKLGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVDQAREVYR 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
+ + V G+ C + P + L+ ++ ++ +L L +G
Sbjct: 184 RAAELPHIAVTGMDCHIGSQLTELQPFLDAADRLVVLMEQLKQDGVQLKHLDLG 237
>gi|269959886|ref|ZP_06174263.1| Predicted amino acid aldolase or racemase [Vibrio harveyi 1DA3]
gi|269835185|gb|EEZ89267.1| Predicted amino acid aldolase or racemase [Vibrio harveyi 1DA3]
Length = 423
Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 9/97 (9%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVE 158
V + L + L V I+ G E + G + L Q+ L ++
Sbjct: 147 VDSSRNVKALERAFAEHQLPLNVLIE--FGVEGGRCGCRNQQDVVELATLIHQQPHLTLK 204
Query: 159 GLMCI------PPAMGNPKPHFYLLSEIARECKLTKL 189
G+ A + + EIA + + KL
Sbjct: 205 GIEVYEGVIHGDNAEQDIRDFLNTTLEIAAQLQNDKL 241
>gi|319784209|ref|YP_004143685.1| alanine racemase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317170097|gb|ADV13635.1| alanine racemase domain protein [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 353
Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 10/127 (7%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNV 157
T +T L+ LPV ++ +TG + G+ ++ + L
Sbjct: 108 TADSMETLEGLAATFTDAGHRLPVLVECDTGM--GRCGVQSADEAVALARQIDRAGGLAF 165
Query: 158 EGLMCIPPAMGNPKPHFYLLSEIARECKLTKL------SMGMTRDFELAIASGATSVRIG 211
GLM P A + L++ + + L S G + + S T R G
Sbjct: 166 GGLMTYPAAGKAAEAE-AWLADAKQALAASGLACERISSGGTPDMWRSSDTSVVTEYRPG 224
Query: 212 SGIFGER 218
+ I+ +R
Sbjct: 225 TYIYLDR 231
>gi|225019949|ref|ZP_03709141.1| hypothetical protein CLOSTMETH_03903 [Clostridium methylpentosum
DSM 5476]
gi|224947313|gb|EEG28522.1| hypothetical protein CLOSTMETH_03903 [Clostridium methylpentosum
DSM 5476]
Length = 432
Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 24/117 (20%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPN--QTKDF 145
V L+ +Q + + ++V G + K G + +
Sbjct: 131 VDNLNELERLNALAAEQGKRPNILLRVKPGIDAHTHSFIRTGQIDSKFGFAIETGEALEA 190
Query: 146 VILCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARE--CKLTKLSMG 192
+N+ G + I P + + ++ + +E +LT L++G
Sbjct: 191 AKEASAMEHVNLVGAHCHIGSQIFDIDPFVLAAEVMMGYIAAVKKETGVELTDLNLG 247
>gi|114330425|ref|YP_746647.1| diaminopimelate decarboxylase [Nitrosomonas eutropha C91]
gi|114307439|gb|ABI58682.1| diaminopimelate decarboxylase [Nitrosomonas eutropha C91]
Length = 417
Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V E L+ + + PV ++VN + K GI + +
Sbjct: 127 VESEMELIALNEIAGQMGKIAPVSLRVNPDVDANTHPYISTGMKENKFGIPAAEAERIYA 186
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
+ +Q + V GL C I P + LL+ + A + L +G
Sbjct: 187 IAQQLPYIRVSGLDCHIGSQLTEIAPFIEAAHKMLDLLARLQATGISIEHLDLG 240
>gi|332654849|ref|ZP_08420591.1| putative alanine racemase [Ruminococcaceae bacterium D16]
gi|332516192|gb|EGJ45800.1| putative alanine racemase [Ruminococcaceae bacterium D16]
Length = 355
Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 36/198 (18%), Positives = 66/198 (33%), Gaps = 43/198 (21%)
Query: 43 RVALSCGQVIFAENKLQEAK---------KKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL 93
R+ G F N ++EA+ ++ + LR D ++ ++V L
Sbjct: 45 RLLRDAGVTRFGVNSVEEAQLLRESGFETEEILMLRSTVD----------REELEQLVDL 94
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY 153
V+ TVS T L+ +S +IQV+TG G + ++ + ++ R
Sbjct: 95 -SVVCTVSSVDTGLALNAVAENRSTVAEAHIQVDTGLGF--GGFLISEPEKILLAYRSLP 151
Query: 154 QLNVEG----LMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA---- 205
+ + G L + ++ G A+G+
Sbjct: 152 NVALSGIYTQLHAVTGKSQEVDGQLKQFQQVLEAIHQAGFETGTVH------AAGSFALM 205
Query: 206 -------TSVRIGSGIFG 216
+VR GS I G
Sbjct: 206 HFDDARLDAVRAGSAILG 223
>gi|302392187|ref|YP_003828007.1| ribulose-phosphate 3-epimerase [Acetohalobium arabaticum DSM 5501]
gi|302204264|gb|ADL12942.1| ribulose-phosphate 3-epimerase [Acetohalobium arabaticum DSM 5501]
Length = 215
Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 10/101 (9%)
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---KPHFYLLSEIARE 183
N + K+G+ N L +L++ LM + P G + ++ + +
Sbjct: 100 NIKEQEVKAGVALNPATPLTALDHILPELDLVLLMTVNPGFGGQKFIEDMLPKINRLRKR 159
Query: 184 CKLTKLSMGMTRD-------FELAIASGATSVRIGSGIFGE 217
+ L + + D + + +GA + GS IFG
Sbjct: 160 IEQNNLDIDIQVDGGIKPYNVDRVVEAGANVIVAGSAIFGS 200
>gi|148378278|ref|YP_001252819.1| alanine racemase [Clostridium botulinum A str. ATCC 3502]
gi|153930927|ref|YP_001382679.1| alanine racemase [Clostridium botulinum A str. ATCC 19397]
gi|153935439|ref|YP_001386230.1| alanine racemase [Clostridium botulinum A str. Hall]
gi|148287762|emb|CAL81828.1| alanine racemase [Clostridium botulinum A str. ATCC 3502]
gi|152926971|gb|ABS32471.1| alanine racemase [Clostridium botulinum A str. ATCC 19397]
gi|152931353|gb|ABS36852.1| alanine racemase [Clostridium botulinum A str. Hall]
Length = 404
Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 9/108 (8%)
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQT 142
N I+ D+ +VS K A LS + + + V I VN + + G +P +
Sbjct: 97 CNNAETIIKN-DLEVSVSSYKYAEQLSKKAQQLGK--DVKIHVNIDTGMGRLGFLPTEEN 153
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGN-----PKPHFYLLSEIARECK 185
+ + + + EGL F + + +
Sbjct: 154 LEKIYQISKLPNIIFEGLFSHFSTADEKNKEYTNEQFKKFLDFYYKLR 201
>gi|66045821|ref|YP_235662.1| Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2
[Pseudomonas syringae pv. syringae B728a]
gi|63256528|gb|AAY37624.1| Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2
[Pseudomonas syringae pv. syringae B728a]
Length = 402
Score = 41.2 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------ 127
G L S+ S +++ + I + + L + R PV++++N
Sbjct: 99 GKLDSDLRSALLNKVEAIH-LESLNEIARLQQLAEQAGRVQPVFLRINPQLPAAQSSRLA 157
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
GI + V L ++G
Sbjct: 158 MAGTATPFGIDEADLAEAVRRVDNASHLTLKGF 190
>gi|300724984|ref|YP_003714309.1| putative alanine racemase [Xenorhabdus nematophila ATCC 19061]
gi|297631526|emb|CBJ92233.1| putative alanine racemase [Xenorhabdus nematophila ATCC 19061]
Length = 410
Score = 41.2 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 58/136 (42%), Gaps = 15/136 (11%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM--PNQTKDFVILCRQ 151
+D+ E + A ++ K + + V++ +NTG + ++G+ Q K + Q
Sbjct: 134 YDMEEIIGDLAHAKTVADLAKKHGKEIRVHLALNTGL-MSRNGLEMKTEQGKQEALKMTQ 192
Query: 152 KYQLNVEGLM---------CIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFE-LAI 201
L + G+M I ++ N L + A K ++++ + F ++I
Sbjct: 193 LPNLKLVGIMSHHALTDLDAIRDSIKNFNEQTAWLIK-AANLKRDEITLHASSSFASVSI 251
Query: 202 -ASGATSVRIGSGIFG 216
+ VR+GS ++G
Sbjct: 252 PEAQFDMVRVGSALYG 267
>gi|218674907|ref|ZP_03524576.1| alanine racemase protein [Rhizobium etli GR56]
Length = 338
Score = 41.2 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 30/192 (15%), Positives = 64/192 (33%), Gaps = 21/192 (10%)
Query: 39 SKKIRV-ALSCGQVIFAENKL-Q--EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS-- 92
++++ G F + Q EA + L + + + LQ
Sbjct: 20 AERVAQTLYDQGCRHF---FVAQFVEAVRLRPALAESAQIF--VLNGLQPGNEVACAESG 74
Query: 93 LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK 152
+ V+ ++++ + S + + R LP +Q +TG + G + + R
Sbjct: 75 IVPVLNSLAQWRQWSATARRL---KRCLPAVLQFDTGM--SRLGFPWEERAELAAALRDG 129
Query: 153 YQLNVEGLMCIPPAMGNPK-----PHFYLLSEIARECKLTKLSMGMTRDFELAIASGATS 207
+ + +M + + F ++ IA E +S + L A
Sbjct: 130 ANVEILFIMSHLACADDLESSQNGEQFAEMARIADEFPGFDISFANSGGVFLGDAYHGVL 189
Query: 208 VRIGSGIFGERP 219
R G ++G P
Sbjct: 190 ARPGIALYGGAP 201
>gi|184200309|ref|YP_001854516.1| alanine racemase [Kocuria rhizophila DC2201]
gi|183580539|dbj|BAG29010.1| alanine racemase [Kocuria rhizophila DC2201]
Length = 645
Score = 41.2 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 38/206 (18%), Positives = 74/206 (35%), Gaps = 26/206 (12%)
Query: 7 LQVFKQKIENSAILA-KRPKDSVSLVAVSK----MVDSKKI-RVALSCGQVIFAENKLQE 60
L + + LA R +L+AV K + ++ R AL G + + E
Sbjct: 21 LAAVRHNVGRLLELARGR-----TLIAVVKANAYGHGAPQVARAALEAGAHMLGTAHVSE 75
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIETVSREKTASLLSLEMIKQSRF 119
A + L + ++ DV VS + ++L+ + R
Sbjct: 76 ALALRAEGITAPVLAW-----LHTPSTDFAAAVREDVRLGVSGGELDAVLA-AAREAGRP 129
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ---LNVEGLMCIPPAMGNP-KPHFY 175
V++++++G + ++G P Q V R+ L+VEG+ P +P
Sbjct: 130 AVVHLKLDSG--LGRNGATPEQWPALVRRVREAEGEGLLSVEGIFTHLAVADEPARPETA 187
Query: 176 -LLSEIARECKLTKLSMGMTRDFELA 200
L+ + + T G++ A
Sbjct: 188 EQLATLTTAVR-TAREAGLSPTMVHA 212
>gi|330955127|gb|EGH55387.1| diaminopimelate decarboxylase [Pseudomonas syringae Cit 7]
Length = 402
Score = 41.2 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------ 127
G L S+ S +++ + I + + L + R PV++++N
Sbjct: 99 GKLDSDLRSALLNKVEAIH-LESLNEIARLQQLAEQAGRVQPVFLRINPQLPAAQSSRLA 157
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
GI + V L ++G
Sbjct: 158 MAGTATPFGIDEADLAEAVRRVDNASHLTLKGF 190
>gi|87124994|ref|ZP_01080841.1| putative Alanine racemase [Synechococcus sp. RS9917]
gi|86167314|gb|EAQ68574.1| putative Alanine racemase [Synechococcus sp. RS9917]
Length = 390
Score = 41.2 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 44/212 (20%), Positives = 75/212 (35%), Gaps = 33/212 (15%)
Query: 30 LVAVSK----MVDSKKI-RVALSCGQVIFAENKLQEAKK-KWIPLRKEWDVQLRFIGSL- 82
L+AV K + + R AL+ G LQE + + LR+ V +G+L
Sbjct: 49 LMAVVKADGYGHGAVTVARAALAGGATQLGVATLQEGIELRQAGLREPVLV----MGNLT 104
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
Q++ + + ++ T+S + A L R V Q+ + + G +
Sbjct: 105 QADDLRRCLHW-QLMPTLSGMREALLCQNLASDSGRRFDV--QLKLDTGMTRLGCDWQEA 161
Query: 143 KDFVILCRQKYQLNVEG------LMCIPPAMGNPK-------PHFYLLSEIARECKLTKL 189
V +Q ++ +EG L P + L + + L
Sbjct: 162 PRLVDAIQQLDRIRLEGIYSHLALADGDPNGDGERVTQQQHQRFREALRLLPEGDAVHHL 221
Query: 190 --SMGMTRDFELAIASGATSVRIGSGIFGERP 219
S G RD EL VR+G ++G P
Sbjct: 222 ANSAGTLRDPEL----HHDLVRVGLALYGHSP 249
>gi|187920497|ref|YP_001889529.1| alanine racemase domain-containing protein [Burkholderia
phytofirmans PsJN]
gi|187718935|gb|ACD20158.1| alanine racemase domain protein [Burkholderia phytofirmans PsJN]
Length = 355
Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 19/129 (14%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF-VILCRQKYQLNVE 158
V AS ++ + V+I+V+T +SGI P Q V + V
Sbjct: 83 VDNPTAASAIAAFGDQHGETFEVWIEVDTDG--HRSGITPEQDTLLEVGRILHDNGVEVG 140
Query: 159 GLMC-------------IPPAMGNPKPHFYLLSEIARECKL--TKLSMGMTRDFELAIA- 202
G+M + + ++ RE + +S+G T A
Sbjct: 141 GVMTHAGSSYELDTPEALAALAEQERAGCVRAAQRLREAGIACPAVSVGSTPTALAATQL 200
Query: 203 SGATSVRIG 211
G T VR G
Sbjct: 201 EGVTEVRAG 209
>gi|296135146|ref|YP_003642388.1| diaminopimelate decarboxylase [Thiomonas intermedia K12]
gi|295795268|gb|ADG30058.1| diaminopimelate decarboxylase [Thiomonas intermedia K12]
Length = 430
Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V + L+ + V ++VN + K GI +Q +
Sbjct: 137 VESPSELAALNRVAQAAGKVARVALRVNPDVDAGTHPYISTGLKTNKFGISQDQAAQLAL 196
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
Q Q+ + G+ C I + +P+ L ++
Sbjct: 197 QTAQFEQVQLVGIACHIGSQITTVEPYLDALDKVLD 232
>gi|13476878|ref|NP_108447.1| metal-activated pyridoxal enzyme [Mesorhizobium loti MAFF303099]
gi|14027639|dbj|BAB53908.1| metal-activated pyridoxal enzyme [Mesorhizobium loti MAFF303099]
Length = 352
Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 12/148 (8%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI- 137
+G + ++ + + T +T L+ L V ++ +TG + + G+
Sbjct: 87 LGRAKLQRLKTLHGRVTLSVTSDSMETLEGLAATFTDAGHPLQVLVECDTG--MGRCGVQ 144
Query: 138 MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKL-----SMG 192
+Q L + L GLM P A + L+ + + L S G
Sbjct: 145 TADQAVALARLIDKAGGLTFGGLMTYPAAGRAAEAE-AWLANAKQALAASGLACERISSG 203
Query: 193 MTRDFELAIASGA--TSVRIGSGIFGER 218
T D + + T R G+ I+ +R
Sbjct: 204 GTPDMWRS-GEDSVVTEYRPGTYIYLDR 230
>gi|187735226|ref|YP_001877338.1| diaminopimelate decarboxylase [Akkermansia muciniphila ATCC
BAA-835]
gi|187425278|gb|ACD04557.1| diaminopimelate decarboxylase [Akkermansia muciniphila ATCC
BAA-835]
Length = 429
Score = 40.8 bits (95), Expect = 0.12, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 14/96 (14%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E ++ PV ++VN TG K G+ + +
Sbjct: 124 VESEAELRAINAIAASMGVKAPVAVRVNPNVEAGTHKYITTGKAENKFGVDFERIESLYE 183
Query: 148 -LCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIA 181
R+ L+++GL M I + KP + ++A
Sbjct: 184 MAARELPNLHLKGLQMHIGSQLTQAKPFLEAVRKVA 219
>gi|240167811|ref|ZP_04746470.1| alanine racemase [Mycobacterium kansasii ATCC 12478]
Length = 392
Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 52/144 (36%), Gaps = 33/144 (22%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK---YQL 155
VS + L + + R V ++V+TG + ++G+ P + + RQ + +
Sbjct: 109 AVSSTRQLDELLDAVARTGRTATVSVKVDTG--LNRNGVPPALYPEMLARLRQAAAEHAI 166
Query: 156 NVEGLMC--------IPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA-- 205
+ GLM P F + ARE +T FE+A S +
Sbjct: 167 RLRGLMSHLVYADAPQQPINDIQAQRFRDMLSYAREEGVT---------FEVAHLSNSSA 217
Query: 206 TS---------VRIGSGIFGERPC 220
T VR G ++G P
Sbjct: 218 TMARPDLTLDLVRPGIAVYGLSPV 241
>gi|89899781|ref|YP_522252.1| alanine racemase-like protein [Rhodoferax ferrireducens T118]
gi|89344518|gb|ABD68721.1| alanine racemase-like [Rhodoferax ferrireducens T118]
Length = 379
Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 21/134 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY--QLNV 157
+ +T LL+ R V I++++ +SG+ P+ + V + + V
Sbjct: 110 LDSMETTRLLAERARATRRHFDVLIEIDSDG--HRSGVTPD-ASELVEIGLFLESAGIPV 166
Query: 158 EGLMC-------------IPPAMGNPKPHFYLLSEIARECKL--TKLSMGMTRDFELAIA 202
+G++ I + L ++ R + +SMG T A
Sbjct: 167 KGVLTHAGSSYDCASIEAIRAMAEQERAAVVLAAQRLRAAGIACPVVSMGSTPTALFAEH 226
Query: 203 -SGATSVRIGSGIF 215
G T VR G +F
Sbjct: 227 LEGVTEVRAGVFVF 240
>gi|116053426|ref|YP_793751.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa UCBPP-PA14]
gi|254238026|ref|ZP_04931349.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa C3719]
gi|296392135|ref|ZP_06881610.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa PAb1]
gi|313106693|ref|ZP_07792911.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa 39016]
gi|115588647|gb|ABJ14662.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa UCBPP-PA14]
gi|126169957|gb|EAZ55468.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa C3719]
gi|310879413|gb|EFQ38007.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa 39016]
Length = 415
Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 39/138 (28%), Gaps = 34/138 (24%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + L + PV ++VN + K GI ++ +
Sbjct: 124 VESGEELERLQRVAAELGVKAPVSLRVNPDVDAQTHPYISTGLKENKFGIAIDEAEAVYA 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIA--------RECKLTKLSMG------ 192
+ L V G+ C I + +P L + + + L +G
Sbjct: 184 RAAELDHLEVIGVDCHIGSQLTQLEPFLDALERLLGLVDRLAGKGIGIRHLDLGGGLGVR 243
Query: 193 -------MTRDFELAIAS 203
+ D+ AI
Sbjct: 244 YRDEQPPLAGDYIRAIRE 261
>gi|209885817|ref|YP_002289674.1| metal-activated pyridoxal enzyme [Oligotropha carboxidovorans OM5]
gi|209874013|gb|ACI93809.1| metal-activated pyridoxal enzyme [Oligotropha carboxidovorans OM5]
Length = 366
Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
IG+ ++ +++E V V ++L+ + L + ++++ G + + G+
Sbjct: 97 IGADKARRLAEAARTAKVAVCVDHADQVAVLAKAADEAGVTLDILVEIDVG--MGRCGVP 154
Query: 139 PNQ-TKDFVILCRQKYQLNVEGL 160
+ + L GL
Sbjct: 155 STESAVALAREVAKHKGLRFTGL 177
>gi|107104378|ref|ZP_01368296.1| hypothetical protein PaerPA_01005454 [Pseudomonas aeruginosa PACS2]
gi|218894380|ref|YP_002443250.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa LESB58]
gi|254243836|ref|ZP_04937158.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa 2192]
gi|126197214|gb|EAZ61277.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa 2192]
gi|218774609|emb|CAW30426.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa LESB58]
Length = 415
Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 39/138 (28%), Gaps = 34/138 (24%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + L + PV ++VN + K GI ++ +
Sbjct: 124 VESGEELERLQRVAAELGVKAPVSLRVNPDVDAQTHPYISTGLKENKFGIAIDEAEAVYA 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIA--------RECKLTKLSMG------ 192
+ L V G+ C I + +P L + + + L +G
Sbjct: 184 RAAELDHLEVIGVDCHIGSQLTQLEPFLDALERLLGLVDRLAGKGIGIRHLDLGGGLGVR 243
Query: 193 -------MTRDFELAIAS 203
+ D+ AI
Sbjct: 244 YRDEQPPLAGDYIRAIRE 261
>gi|157370985|ref|YP_001478974.1| alanine racemase [Serratia proteamaculans 568]
gi|157322749|gb|ABV41846.1| alanine racemase [Serratia proteamaculans 568]
Length = 357
Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 8/134 (5%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
++ + + +V + + ++ K S L VY++VN+G + G P + +
Sbjct: 89 ALLDRYRLTTSVHSDWQLAAIAE--AKLSAPLDVYLKVNSGM--NRLGFAPERLHAVWMK 144
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTR---DFELAIASGA 205
++ + LM P+ ++ I R K L + G+
Sbjct: 145 AQEIGNIASLTLMSHFATADGPQGVEAQMASIERAAKGITLPRCLANSAATLWHPQTHGS 204
Query: 206 TSVRIGSGIFGERP 219
VR G ++G P
Sbjct: 205 -WVRPGIVLYGASP 217
>gi|207722229|ref|YP_002252665.1| siderophore synthesis decarboxylase protein [Ralstonia solanacearum
MolK2]
gi|207728412|ref|YP_002256806.1| siderophore synthesis decarboxylase 'partial sequence n terminus)
protein [Ralstonia solanacearum MolK2]
gi|206587405|emb|CAQ17987.1| putative siderophore synthesis decarboxylase protein [Ralstonia
solanacearum MolK2]
gi|206591658|emb|CAQ57270.1| probable siderophore synthesis decarboxylase 'partial sequence n
terminus) protein [Ralstonia solanacearum MolK2]
Length = 364
Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 43/139 (30%), Gaps = 33/139 (23%)
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN-------------- 127
LQ + ++I V E L + R V ++VN
Sbjct: 99 LQC----ALERGVELIH-VESELQLRRLDAVACRMGRRARVLLRVNPNPLSADSAGKRPQ 153
Query: 128 ----TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL--------MCIPPAMGNPKPHFY 175
G + + GI + D + L R + V GL + + + +
Sbjct: 154 GTLTMGGQPTQFGIEEDAVPDLIRLARGLAGVKVVGLHLHALSNNLDADSHLALVRHYLA 213
Query: 176 LLSEIARECK--LTKLSMG 192
L + RE L L++G
Sbjct: 214 LALRLRREHGLTLDTLNVG 232
>gi|56461656|ref|YP_156937.1| diaminopimelate decarboxylase [Idiomarina loihiensis L2TR]
gi|56180666|gb|AAV83388.1| Diaminopimelate decarboxylase [Idiomarina loihiensis L2TR]
Length = 420
Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V E + + PV ++VN + K GI + K +
Sbjct: 124 VESEAELERIQDIAAAMDKQAPVSLRVNPDVDAKTHPYIATGMKANKFGISMSLAKPVFL 183
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
+N+ G +M P + + F L+SE+ ++ +LT L +G
Sbjct: 184 KAHSLPNINLIGADCHIGSQIMTAEPFLDAAQRMFNLVSELEKDGVQLTHLDLG 237
>gi|91976729|ref|YP_569388.1| alanine racemase-like [Rhodopseudomonas palustris BisB5]
gi|91683185|gb|ABE39487.1| alanine racemase-like [Rhodopseudomonas palustris BisB5]
Length = 360
Score = 40.8 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 80/228 (35%), Gaps = 28/228 (12%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMV-DSKKIRVALSCGQV-----IFAEN 56
+ + + + ++A +A RP K ++ ++ G E
Sbjct: 25 VERNIARVQA-LCDAAGVANRPHI--------KTHKSPLLAQMQIAAGARGITCQKIGE- 74
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
A+ + + IG + ++ + + +++ E + L +
Sbjct: 75 ----AEVMADAGIDDILISYNLIGEEKMARLGALHARAEMVVAADNEVVIAGLPAAAARA 130
Query: 117 SRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
R L V ++ +TG ++G+ P + L +G M P G P+ +
Sbjct: 131 GRPLGVVVECDTGR--ARAGVETPAEAIALARSIAASDGLIFKGFMLYPTETGWPQAQRF 188
Query: 176 LLSEIA--RECKLTKL--SMGMTRDFE-LAIASGATSVRIGSGIFGER 218
+A R L S G + + + L +GAT R G+ ++ +R
Sbjct: 189 FDEALAGIRAHGLDAAMVSTGGSPNLKNLGQLAGATEHRPGTYVYNDR 236
>gi|255946227|ref|XP_002563881.1| Pc20g14030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588616|emb|CAP86732.1| Pc20g14030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 367
Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVE 158
V E A+ + + P+ + ++ + ++G++P + L +
Sbjct: 115 VDSEAGATAIDKALAAAGIDEPISVLIDLDVGLHRTGVLPGDPAMTLARHVQGLKHLKLI 174
Query: 159 GL 160
GL
Sbjct: 175 GL 176
>gi|49088246|gb|AAT51548.1| PA5277 [synthetic construct]
Length = 416
Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 39/138 (28%), Gaps = 34/138 (24%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + L + PV ++VN + K GI ++ +
Sbjct: 124 VESGEELERLQRVAAELGVKAPVSLRVNPDVDAQTHPYISTGLKENKFGIAIDEAEAVYA 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIA--------RECKLTKLSMG------ 192
+ L V G+ C I + +P L + + + L +G
Sbjct: 184 RAAELDHLEVIGVDCHIGSQLTQLEPFLDALERLLGLVDRLAGKGIGIRHLDLGGGLGVR 243
Query: 193 -------MTRDFELAIAS 203
+ D+ AI
Sbjct: 244 YRDEQPPLAGDYIRAIRE 261
>gi|15600470|ref|NP_253964.1| diaminopimelate decarboxylase [Pseudomonas aeruginosa PAO1]
gi|12230897|sp|P19572|DCDA_PSEAE RecName: Full=Diaminopimelate decarboxylase; Short=DAP
decarboxylase
gi|9951590|gb|AAG08662.1|AE004940_6 diaminopimelate decarboxylase [Pseudomonas aeruginosa PAO1]
Length = 415
Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 39/138 (28%), Gaps = 34/138 (24%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + L + PV ++VN + K GI ++ +
Sbjct: 124 VESGEELERLQRVAAELGVKAPVSLRVNPDVDAQTHPYISTGLKENKFGIAIDEAEAVYA 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIA--------RECKLTKLSMG------ 192
+ L V G+ C I + +P L + + + L +G
Sbjct: 184 RAAELDHLEVIGVDCHIGSQLTQLEPFLDALERLLGLVDRLAGKGIGIRHLDLGGGLGVR 243
Query: 193 -------MTRDFELAIAS 203
+ D+ AI
Sbjct: 244 YRDEQPPLAGDYIRAIRE 261
>gi|300693403|ref|YP_003749376.1| diaminopimelate decarboxylase protein (lysa) [Ralstonia
solanacearum PSI07]
gi|299075440|emb|CBJ34735.1| putative diaminopimelate decarboxylase protein (lysA) [Ralstonia
solanacearum PSI07]
Length = 413
Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 22/132 (16%), Positives = 38/132 (28%), Gaps = 29/132 (21%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------------TGY 130
+ ++I E L + R V ++VN G
Sbjct: 102 ALERGVELIHA-ESELQLRRLDAIARRMGRRARVLLRVNPNPLSADAAGRRPEGTLTMGG 160
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP-PAMGNPKPHFYLLS-------EIAR 182
+ + GI + + L R + V GL + H L+ + R
Sbjct: 161 QPTQFGIEEDAVPGLIRLARTLPGVEVVGLHLHALSNNLDADSHLALMRHYLSLALRLHR 220
Query: 183 ECK--LTKLSMG 192
E L L++G
Sbjct: 221 EHGLTLDTLNVG 232
>gi|294793102|ref|ZP_06758248.1| alanine racemase [Veillonella sp. 6_1_27]
gi|294794860|ref|ZP_06759995.1| alanine racemase [Veillonella sp. 3_1_44]
gi|294454222|gb|EFG22596.1| alanine racemase [Veillonella sp. 3_1_44]
gi|294456047|gb|EFG24411.1| alanine racemase [Veillonella sp. 6_1_27]
Length = 374
Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 7/103 (6%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
E+V+ + I V L+ + V + V+TG + GI P +F+
Sbjct: 94 ELVADTNSIPAVCESTDLESLNKVADNHDMIIRVAVAVDTGM--HRIGIKPEDAIEFIKR 151
Query: 149 CRQKYQLNVEGL---MCIPPAMGNPKPHF--YLLSEIARECKL 186
L ++G M A H + E +
Sbjct: 152 IESYENLEIDGFFSHMSNADAADQSHAHSQTQKFHRMVDEIRA 194
>gi|269797315|ref|YP_003311215.1| alanine racemase [Veillonella parvula DSM 2008]
gi|269093944|gb|ACZ23935.1| alanine racemase [Veillonella parvula DSM 2008]
Length = 370
Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 7/103 (6%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
E+V+ + I V L+ + V + V+TG + GI P +F+
Sbjct: 90 ELVADTNSIPAVCESTDLESLNKVADNHDMIIRVAVAVDTGM--HRIGIKPEDAIEFIKR 147
Query: 149 CRQKYQLNVEGL---MCIPPAMGNPKPHF--YLLSEIARECKL 186
L ++G M A H + E +
Sbjct: 148 IESYENLEIDGFFSHMSNADAADQSHAHSQTQKFHRMVDEIRA 190
>gi|226227158|ref|YP_002761264.1| diaminopimelate decarboxylase [Gemmatimonas aurantiaca T-27]
gi|226090349|dbj|BAH38794.1| diaminopimelate decarboxylase [Gemmatimonas aurantiaca T-27]
Length = 423
Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 14/92 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN-------------TGYEIQKSGIMPNQTKDFV 146
V E + ++ P+ I+VN TG + QK GI + V
Sbjct: 126 VESEAELVTIDAVAARKGVVAPIAIRVNPEVTVETPHAYIRTGEKGQKFGIPRDDITRLV 185
Query: 147 ILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLL 177
L R+ + + GL M + +GN P L
Sbjct: 186 SLIRELPHIALRGLGMHLGSQIGNADPLRDAL 217
>gi|167948474|ref|ZP_02535548.1| diaminopimelate decarboxylase [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 334
Score = 40.8 bits (95), Expect = 0.14, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 8/123 (6%)
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY---EI-QKSG 136
Q + +V+ + + L + R +PV I++N E + G
Sbjct: 26 HKQREILERVVAEGARVH-IDNLDEMYTLEAIAAEVGRTIPVTIRLNFDTGYTEPWSRFG 84
Query: 137 IMPN--QTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIARECKLTKLSMGM 193
Q D L + GL I + + + + + + + + G
Sbjct: 85 FNIETGQALDAARRIGNSPHLRLRGLHSHIGTFILDTRAYEAQVRIMCAFMETAESETGC 144
Query: 194 TRD 196
D
Sbjct: 145 EID 147
>gi|331019663|gb|EGH99719.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. lachrymans
str. M302278PT]
Length = 402
Score = 40.8 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------ 127
G L S+ S +++ + + + L + R PV+I++N
Sbjct: 99 GKLDSDLRSALLNKVEAVH-LESLNEIQRLQHLAEEAGRVQPVFIRINPQLPAAQSSKLA 157
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
GI + V L L ++G
Sbjct: 158 MAGTATPFGIDEADLAEAVRLVDSATHLTLKGF 190
>gi|24375791|ref|NP_719834.1| diaminopimelate decarboxylase [Shewanella oneidensis MR-1]
gi|24350739|gb|AAN57278.1|AE015863_7 diaminopimelate decarboxylase [Shewanella oneidensis MR-1]
Length = 414
Score = 40.8 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 13/94 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L+L + + PV ++VN + K GI ++ +
Sbjct: 124 VESSAELEQLNLVAGRLGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMDEAEAVFA 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEI 180
L V+G+ C I + +P + +
Sbjct: 184 RAHALPHLQVKGVDCHIGSQLTEIQPFLDAMDRM 217
>gi|312880319|ref|ZP_07740119.1| alanine racemase [Aminomonas paucivorans DSM 12260]
gi|310783610|gb|EFQ24008.1| alanine racemase [Aminomonas paucivorans DSM 12260]
Length = 372
Score = 40.8 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 20/139 (14%)
Query: 95 DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ 154
DV TV+ A +LS E +Q R +++V+TG + G +P + +
Sbjct: 97 DVAATVADLSFAQVLSREATRQGRPARFHLKVDTGM--GRIGFLPQELPSLLPELLALGN 154
Query: 155 LNVEGLMCIPPAMGNPK-----PHFYLLSEIARECKLTKLSMGMTRDFELAIASGATS-- 207
L+ EG+ + F ++ E + G+ A S A
Sbjct: 155 LDFEGVFTHFATADEERLDYTWTQFRRFGDVLEELR----DRGVGVRLRHACNSAALMRC 210
Query: 208 -------VRIGSGIFGERP 219
VR G ++G RP
Sbjct: 211 PEMHLDAVRPGVILYGLRP 229
>gi|291513977|emb|CBK63187.1| diaminopimelate decarboxylase [Alistipes shahii WAL 8301]
Length = 387
Score = 40.8 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 15/75 (20%)
Query: 98 ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDF 145
E++ + LS E + + +++N + K GI + +
Sbjct: 113 ESIQELELVDALSAEA---GKVTDIALRINPDIDPKTNHCIDTGQADSKFGISYEEVLEH 169
Query: 146 VILCRQKYQLNVEGL 160
R +N+ GL
Sbjct: 170 AAEIRSLKNVNIIGL 184
>gi|284162042|ref|YP_003400665.1| diaminopimelate decarboxylase [Archaeoglobus profundus DSM 5631]
gi|284012039|gb|ADB57992.1| diaminopimelate decarboxylase [Archaeoglobus profundus DSM 5631]
Length = 419
Score = 40.8 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 23/122 (18%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFV 146
+V + K+ + + + +VN + K GI + +
Sbjct: 118 SVDSLDELYTIQKIAEKKGKIVEIAFRVNPDIDPKTHPKIATGLKTSKFGIPWDIALEAY 177
Query: 147 ILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIAR---ECKLTKLSMGMTR 195
+ + G+ C I P + F L EI + E + + G+
Sbjct: 178 KKAVELPNVKPVGIHCHIGSQIKEIDPFVEALNRLFDLAVEIEKLGVEIRFLDIGGGLAI 237
Query: 196 DF 197
D+
Sbjct: 238 DY 239
>gi|157377262|ref|YP_001475862.1| diaminopimelate decarboxylase [Shewanella sediminis HAW-EB3]
gi|157319636|gb|ABV38734.1| diaminopimelate decarboxylase [Shewanella sediminis HAW-EB3]
Length = 414
Score = 40.8 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 20/104 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L+L ++ + PV ++VN + K GI ++ +
Sbjct: 124 VESAAELEQLNLVAVQLGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMDEAEAIFA 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE 183
L V+G+ C I P + L+ +A +
Sbjct: 184 RANSLPGLEVKGVDCHIGSQLTEIQPFLDAMDRMLALIDRLAEQ 227
>gi|326800274|ref|YP_004318093.1| alanine racemase domain protein [Sphingobacterium sp. 21]
gi|326551038|gb|ADZ79423.1| alanine racemase domain protein [Sphingobacterium sp. 21]
Length = 374
Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 49/169 (28%), Gaps = 35/169 (20%)
Query: 35 KM-VDSKKIRVALSCGQVIF--------------AENKLQEAKKKWIPLRKEWDVQLRFI 79
K + I++ G F +Q+ + P+ + RFI
Sbjct: 51 KTSKSADAIQLLQLAGINKFKCATIAEAELLGDCG---VQDVLLAYQPVGPNIN---RFI 104
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
++ + + AS L+ +S L +Y +N G ++GI
Sbjct: 105 ALVKR------FPNTSFACLIDQFDIASQLNQVAFAESFNLNIYFDINVGM--NRTGIKT 156
Query: 140 NQTKDFVILCRQKYQLNVEGLMCI------PPAMGNPKPHFYLLSEIAR 182
++ C L + GL C +EI +
Sbjct: 157 DKVSALAEQCSSLSNLILLGLHCYDGHIHEASLEARQNQCHRYFTEIEQ 205
>gi|313156978|gb|EFR56410.1| diaminopimelate decarboxylase [Alistipes sp. HGB5]
Length = 386
Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 8/73 (10%), Positives = 22/73 (30%), Gaps = 12/73 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
+ L+ + + V +++N + K GI + +
Sbjct: 112 CESIEELELVDRLAGEAGKKTDVALRINPDIDPKTNHCIDTGQADSKFGISYEEVLEHAK 171
Query: 148 LCRQKYQLNVEGL 160
+ +N+ G+
Sbjct: 172 EIKSLKHINIVGI 184
>gi|145219513|ref|YP_001130222.1| diaminopimelate decarboxylase [Prosthecochloris vibrioformis DSM
265]
gi|145205677|gb|ABP36720.1| diaminopimelate decarboxylase [Chlorobium phaeovibrioides DSM 265]
Length = 422
Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V + ++ V ++VN TG +K GI +
Sbjct: 127 VESLSELRAIDRIAGEEGVVASVALRVNPNVTAETHPYITTGDSKEKFGIDEAELPGIFS 186
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIAR 182
L + + + GL M I + + + + L+++
Sbjct: 187 LLGSLHNVRLIGLDMHIGSQIFDTEFYVAALTKLLD 222
>gi|254517892|ref|ZP_05129948.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
gi|226911641|gb|EEH96842.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
Length = 387
Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 14/134 (10%)
Query: 64 KWIPLRKEWDVQLRFIGSL-QSNKV---SEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + + +++ +G L Q K + S D I TV + A ++ + +
Sbjct: 87 KEAEVMIDNGIKIGHVGHLVQIPKALIEKVVKSRPDYI-TVYSIEKAKEINEVCERLNIK 145
Query: 120 LPVYIQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ ++V + Q G N+ K + LN+ G+ P + + +
Sbjct: 146 QNIMLRVLGENDNLYSGQYGGFKLNELKSIGSELVKLKNLNLAGVTSFPCFLFDEES--- 202
Query: 176 LLSEIARECKLTKL 189
+EI R + +
Sbjct: 203 --NEIKRTNNIDTI 214
>gi|148270325|ref|YP_001244785.1| alanine racemase domain-containing protein [Thermotoga petrophila
RKU-1]
gi|147735869|gb|ABQ47209.1| alanine racemase domain protein [Thermotoga petrophila RKU-1]
Length = 353
Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 43/231 (18%), Positives = 79/231 (34%), Gaps = 40/231 (17%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKK---IRVALSCGQVIFAENKLQEAK 62
L+ ++ + +A R + +V V+K V G I E+++
Sbjct: 8 NLKEIEENAKKVVEMASR--RGIEIVGVTK-VTLGDPRFAETLRKAGIKILGESRI---- 60
Query: 63 KKWIPLRKEWDVQLRFI---GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
K + K+ ++ F+ + S V ++ FD I VS A + + R
Sbjct: 61 -KNVLRMKKAGIEGPFMLLRLPMMSELVEDV-RHFDYI-MVSDPDVAKKVDELSREIKRN 117
Query: 120 LPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG------NPKPH 173
+ + ++ G + G+ + V Q NV G I G +
Sbjct: 118 VKIIYMIDVG--DLREGVWFEKA---VEEIAQCKGTNVVG---IGANFGCYGGIIPTREK 169
Query: 174 FYLLSEIARECK------LTKLSMGMTRDFEL----AIASGATSVRIGSGI 214
F +L +I + + + +S G T I G +RIG I
Sbjct: 170 FEILLDIKEKLEKNHGFNIEIVSGGNTPALYALENDEIPEGINQLRIGEAI 220
>gi|318042533|ref|ZP_07974489.1| alanine racemase [Synechococcus sp. CB0101]
Length = 396
Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 31/179 (17%), Positives = 61/179 (34%), Gaps = 24/179 (13%)
Query: 58 LQEAKK-KWIPLRKEWDVQLRFIGSL-QSNKVSEIVSLFDVIETVSREKTASLLSLEMIK 115
LQE + + LR+ V +G+L Q ++ + ++ T+S + A L
Sbjct: 81 LQEGVELRQAGLRQPVLV----LGNLTQPEELRACLHW-QLMPTLSGMREALLCQNLAAG 135
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP----K 171
R + V Q+ + + G + + + + GL P
Sbjct: 136 SGRPMAV--QLKLDTGMARLGAPWQEGRRIAEAISALEAVQLAGLYSHLADADAPGTVLD 193
Query: 172 PHFYLLSEIAREC--KLTKLSMGMTRDFELAIASGA--------TSVRIGSGIFGERPC 220
P E + + + + LA ++G VR+G ++G+RP
Sbjct: 194 PLTRQQQERFEQVLTGVQEAGLACGSR-HLANSAGTLRTAQLHYDMVRVGLALYGQRPA 251
>gi|229591485|ref|YP_002873604.1| putative metal-activated pyridoxal enzyme [Pseudomonas fluorescens
SBW25]
gi|229363351|emb|CAY50481.1| putative metal-activated pyridoxal enzyme [Pseudomonas fluorescens
SBW25]
Length = 378
Score = 40.4 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 43/132 (32%), Gaps = 19/132 (14%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVEG 159
A L + L V+I+++ +SG+ + V +++ G
Sbjct: 110 DSVAGAQALVAFAQQHDERLDVWIEIDCDG--HRSGLAAEDEALLDVARILSDGGMHLRG 167
Query: 160 LMCIPPAMGN----------PKPHFYLLSEIARECKLTKL-----SMGMTRDFELAIAS- 203
+M + + L A+ + T L S+G T A+
Sbjct: 168 VMTHAGSSYELDTPEALQVLAEQERALCVRAAQRIRATGLACPDVSIGSTPTALSALNLD 227
Query: 204 GATSVRIGSGIF 215
G T VR G +F
Sbjct: 228 GVTEVRAGVYVF 239
>gi|330958646|gb|EGH58906.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 402
Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------ 127
G L S+ S +++ + + + L + R PV+I++N
Sbjct: 99 GKLDSDLRSALLNKVEAVH-LESLNEIQRLQHLAEEAGRVQPVFIRINPQLPAAQSSKLA 157
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
GI D V L L ++G
Sbjct: 158 MAGTATPFGIDEADLADAVRLVDSATHLTLKGF 190
>gi|223939745|ref|ZP_03631617.1| diaminopimelate decarboxylase [bacterium Ellin514]
gi|223891616|gb|EEF58105.1| diaminopimelate decarboxylase [bacterium Ellin514]
Length = 432
Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 20/113 (17%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V E ++ + + P+ ++VN + K GI +
Sbjct: 124 VESEPELQRINRIAGRLKKIAPIAVRVNPNVDAHTHAKITTGTYDNKFGIAIENIEGVYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSE-------IARECKLTKLSMG 192
+ + + GL M I + + +P + + + ++ L S+G
Sbjct: 184 RASKLKNIKLRGLQMHIGSQLTSVEPFEQAVKKVSPLVERLKKKHGLEFFSIG 236
>gi|156972658|ref|YP_001443565.1| diaminopimelate decarboxylase [Vibrio harveyi ATCC BAA-1116]
gi|156524252|gb|ABU69338.1| hypothetical protein VIBHAR_00310 [Vibrio harveyi ATCC BAA-1116]
Length = 417
Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++
Sbjct: 125 VESEPELERLNKVAGELGVVAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPAVYK 184
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
+ LNV+G+ C I P + L+ ++ A+ + L +G
Sbjct: 185 FAQSLPNLNVQGIDCHIGSQLTEIEPFIDATDRLLALIDDLKAQGINIRHLDVG 238
>gi|38637786|ref|NP_942760.1| putative diaminopimelate decarboxylase [Ralstonia eutropha H16]
gi|32527124|gb|AAP85874.1| putative diaminopimelate decarboxylase [Ralstonia eutropha H16]
Length = 416
Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 32/119 (26%), Gaps = 27/119 (22%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQ 141
+ + V L+ + PV ++VN E GI +Q
Sbjct: 122 VEALH-VESLHELERLAWLARARGVTAPVLLRVNLAIEGLQATTLMMGGKPTPFGIAGDQ 180
Query: 142 TKDFVILCRQKYQLNVEG----LMCIPPAMGNPKPHFYLL-------SEIARECKLTKL 189
+ R ++ + G LM + H LL E L L
Sbjct: 181 LPACLAWLRAHPEIRLRGFHFHLMS---HQLDAAAHLRLLDAYLQQVRRWRAEYGLDTL 236
>gi|148273758|ref|YP_001223319.1| putative alanine racemase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147831688|emb|CAN02657.1| putative alanine racemase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 385
Score = 40.4 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 51/133 (38%), Gaps = 18/133 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK---YQLN 156
++ + ++ + R V+++V+TG + ++G+ P + V + +++
Sbjct: 111 LNSLRQVREVAEAARRVGRTAEVHLKVDTG--LGRNGVTPAEWPAVVAEVQALVAEGRIH 168
Query: 157 VEGLMCIPPAMG--NPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA--------T 206
+ G+ G + + + L G+ LA +GA
Sbjct: 169 LGGVFSHLANAGREEDRAQVRAFHQSVDVVRAAGLEPGIRH---LAATAGALRVPEARLD 225
Query: 207 SVRIGSGIFGERP 219
VR+G GI+G P
Sbjct: 226 MVRLGIGIYGISP 238
>gi|325981463|ref|YP_004293865.1| alanine racemase [Nitrosomonas sp. AL212]
gi|325530982|gb|ADZ25703.1| alanine racemase [Nitrosomonas sp. AL212]
Length = 360
Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Query: 116 QSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
++ + ++I+VNTG + G+ P Q + + LM + +P
Sbjct: 113 KNHKMDIFIKVNTGM--NRLGLSPKQLPQVIKELTNDQHVKNITLMTHFASADDPSEKAS 170
Query: 176 LLSEIARECKLTK-LSMGMTRDFELAI----ASGATSVRIGSGIFGERP 219
+L ++ +T+ + + AI + + VR G ++G P
Sbjct: 171 VLRQLQCFETITETYNYPCSLANSAAIVNYPETHSDWVRPGIMLYGASP 219
>gi|78187207|ref|YP_375250.1| diaminopimelate decarboxylase [Chlorobium luteolum DSM 273]
gi|78167109|gb|ABB24207.1| diaminopimelate decarboxylase [Chlorobium luteolum DSM 273]
Length = 416
Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVIL 148
+ ++ PV +++N TG +K GI + + L
Sbjct: 128 ESLSELRAIDAIAAERGLTAPVALRINPNVTAETHPYITTGDSKEKFGIDEAELPEVFSL 187
Query: 149 CRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIAR 182
+ + + GL M I + +P+ + ++++
Sbjct: 188 LGELQHVRLVGLDMHIGSQIFDPEFYVAAITKLLD 222
>gi|262273212|ref|ZP_06051028.1| diaminopimelate decarboxylase [Grimontia hollisae CIP 101886]
gi|262222790|gb|EEY74099.1| diaminopimelate decarboxylase [Grimontia hollisae CIP 101886]
Length = 417
Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V E L+ + + PV +++N + K GI ++ ++
Sbjct: 125 VESEAELDRLNQIAGELGKKAPVSLRINPDVDAKTHPYISTGLKENKFGIAFDRAREVYH 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L+V G L + P + + L+ ++ ++ +T L +G
Sbjct: 185 YANSLPHLDVHGIDCHIGSQLTDLAPFIESTDRLLGLIDDLRQDGIHITHLDVG 238
>gi|92115227|ref|YP_575155.1| diaminopimelate decarboxylase [Chromohalobacter salexigens DSM
3043]
gi|91798317|gb|ABE60456.1| diaminopimelate decarboxylase [Chromohalobacter salexigens DSM
3043]
Length = 418
Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L+ + + V ++VN + K GI ++
Sbjct: 124 VESLPELERLNQVAGECGQVARVSLRVNPDVDAKTHPYISTGLKANKFGIAVDEAFAVYQ 183
Query: 148 LCRQKYQLNVEGLMC 162
+ L + GL C
Sbjct: 184 RAAELPNLEIVGLDC 198
>gi|269961537|ref|ZP_06175900.1| diaminopimelate decarboxylase [Vibrio harveyi 1DA3]
gi|269833766|gb|EEZ87862.1| diaminopimelate decarboxylase [Vibrio harveyi 1DA3]
Length = 417
Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++
Sbjct: 125 VESEPELERLNKVAGELGVVAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPAVYK 184
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
+ LNV+G+ C I P + L+ ++ A+ + L +G
Sbjct: 185 FAQSLPNLNVQGIDCHIGSQLTEIEPFIDATDRLLALIDDLKAQGINIRHLDVG 238
>gi|269140449|ref|YP_003297150.1| putative diaminopimelate decarboxylase [Edwardsiella tarda EIB202]
gi|267986110|gb|ACY85939.1| putative diaminopimelate decarboxylase [Edwardsiella tarda EIB202]
gi|304560241|gb|ADM42905.1| Diaminopimelate decarboxylase [Edwardsiella tarda FL6-60]
Length = 465
Score = 40.4 bits (94), Expect = 0.18, Method: Composition-based stats.
Identities = 29/184 (15%), Positives = 61/184 (33%), Gaps = 27/184 (14%)
Query: 33 VSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLRKEWDVQLR-----FIGSLQS-N 85
SK + A+ G EA ++ +RK +V R F G ++
Sbjct: 78 ASKTCSVMGVLQAIRDAGICA-------EANSQY-EVRKCLEVGFRGDQIVFNGVVKKPE 129
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------TGYEI-----QK 134
+ ++ + V + + + V ++V T E+ K
Sbjct: 130 DLEYAIANDLYLINVDSLYELDHIDAISRRLKKTANVCVRVEPNVPSATHAELVTAFHAK 189
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM 193
SG+ Q ++ +++ GL M + + +P + E + + +G+
Sbjct: 190 SGLDLEQAEETCRRILAMPYVHLRGLHMHVGDQVPEAEPFAKATRVLVDESRRLEQVLGI 249
Query: 194 TRDF 197
T D
Sbjct: 250 TFDL 253
>gi|282849282|ref|ZP_06258667.1| alanine racemase [Veillonella parvula ATCC 17745]
gi|282580986|gb|EFB86384.1| alanine racemase [Veillonella parvula ATCC 17745]
Length = 370
Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 5/88 (5%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
E+V+ + I V L + V + V+TG + GI P +F+
Sbjct: 90 ELVADTNSIPAVCESTDLEALDKVADNHDMIIRVAVAVDTGM--HRIGIKPEDAIEFIKR 147
Query: 149 CRQKYQLNVEGL---MCIPPAMGNPKPH 173
L ++G M A H
Sbjct: 148 IESYENLEIDGFFSHMSNADAADQSHAH 175
>gi|325284111|ref|YP_004256652.1| alanine racemase domain-containing protein [Deinococcus
proteolyticus MRP]
gi|324315920|gb|ADY27035.1| alanine racemase domain protein [Deinococcus proteolyticus MRP]
Length = 371
Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 18/130 (13%)
Query: 103 EKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG--- 159
+T +S E ++Q R V I + G + G+M F V G
Sbjct: 100 LETLQRISEEAVRQGRVHKVIIMIEMG--DLREGVMREDLDAFYAQVFGLPGTEVIGIGT 157
Query: 160 -LMCIPPAMGNPKP-----HFYLLSEIARECKLTKLSMGMTRDFELAIASGA-----TSV 208
L C+ M + + + E+ K+ +S G T L + G
Sbjct: 158 NLNCLNGVMPSEDKLIQLGLYRSILELKYGVKIPWVSAGTTVTIPL-LRMGQLPASVNHF 216
Query: 209 RIGSGI-FGE 217
R+G + FG
Sbjct: 217 RVGEALYFGA 226
>gi|88705498|ref|ZP_01103208.1| Diaminopimelate decarboxylase [Congregibacter litoralis KT71]
gi|88700011|gb|EAQ97120.1| Diaminopimelate decarboxylase [Congregibacter litoralis KT71]
Length = 414
Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 13/94 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E +L + PV ++VN TG K G+ + +
Sbjct: 123 VESEAELEVLQEVAAALGKRAPVSVRVNPDVDAGTHPYISTGLRENKFGVATDVAMKLLR 182
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEI 180
+ ++V GL C I + + P L ++
Sbjct: 183 HGKTLPNIDVIGLDCHIGSQLTDMAPLLESLRQL 216
>gi|224438031|ref|ZP_03658970.1| alanine racemase [Helicobacter cinaedi CCUG 18818]
gi|313144476|ref|ZP_07806669.1| alanine racemase [Helicobacter cinaedi CCUG 18818]
gi|313129507|gb|EFR47124.1| alanine racemase [Helicobacter cinaedi CCUG 18818]
Length = 348
Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 44/235 (18%), Positives = 76/235 (32%), Gaps = 49/235 (20%)
Query: 4 GNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQV-IFAENK 57
+ L + I + K +V + AV K + +A G +F +N
Sbjct: 12 KHNLNLIHSHINSH------NKSNVEIAAVLKDNAYGHGLKEMATIAAEYGIKSVFVKNY 65
Query: 58 LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
EA + + + F G Q + I VI +
Sbjct: 66 -NEAIQIYKFFPQVTA----FYGMPQGDFAKNIA---FVIHD----------EKHISALP 107
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLL 177
+ V ++VN G ++GI P++ + F+ QK L + G+ + F+
Sbjct: 108 QGTKVELKVNVGM--NRNGIEPSELESFIQAILQKK-LELIGVFSHNGYGDDLDSVFFHT 164
Query: 178 SEIARECKLTKL--------------SMGMTRDFELAIASGAT--SVRIGSGIFG 216
+ K L S+ + +A G T VRIG G +G
Sbjct: 165 QSNFAKLKQEVLHLSQKYGFAPPRFHSLSTSGAIRVASEGGITDDLVRIGIGAYG 219
>gi|218199879|gb|EEC82306.1| hypothetical protein OsI_26565 [Oryza sativa Indica Group]
Length = 466
Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 53/172 (30%), Gaps = 20/172 (11%)
Query: 46 LSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR--FIGSLQSNKVSEIVSLFDVIETVS-- 101
G + ENK+ + + K ++ +G K+ + I +S
Sbjct: 122 AHAGVSLVGENKV---LQMSSTVPKASNIFWHDCAVGQADRQKLLKQKGCVVWITGLSGS 178
Query: 102 -REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKS-GIMPNQTKDFVILCRQKYQLNV-E 158
+ A L E+ + + V N + + K G + + + +L
Sbjct: 179 GKSTLACTLDRELHTRGKLSYVLDGDNLRHGLNKDLGFKAEDRAENIRRVGEVAKLFADA 238
Query: 159 GLMCIPPAMGNPKPHFYLLSEIARECKLTKL----------SMGMTRDFELA 200
GL+CI + + + + ++ S ++LA
Sbjct: 239 GLVCIASFISPYRRDRESCRALLSDGSFIEVFLNMPLELCESRDPKGLYKLA 290
>gi|325290796|ref|YP_004266977.1| alanine racemase [Syntrophobotulus glycolicus DSM 8271]
gi|324966197|gb|ADY56976.1| alanine racemase [Syntrophobotulus glycolicus DSM 8271]
Length = 376
Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 57/161 (35%), Gaps = 12/161 (7%)
Query: 40 KKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIET 99
+ +R G F + ++ K +V + IG ++ IV+ +I
Sbjct: 46 EIVRTLKEEGVRRFG---VAILEEALQIREKFPEVTVMLIGPTMPDQAERIVAE-GIIPE 101
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
V R + A SLE K+ ++I+V+TG + G + ++ + Q + +EG
Sbjct: 102 VFRLEQAEAFSLEAEKKGIPAILHIKVDTGM--GRIGFQEDALENILK-IAQLPGIEIEG 158
Query: 160 LMCIPPAMGNPKPHFY-----LLSEIARECKLTKLSMGMTR 195
+ F + K L++ M
Sbjct: 159 IYTHLATADEIDLGFAFTQLKRFDGLYESLKTAGLNIPMRH 199
>gi|251793705|ref|YP_003008435.1| diaminopimelate decarboxylase [Aggregatibacter aphrophilus NJ8700]
gi|247535102|gb|ACS98348.1| diaminopimelate decarboxylase [Aggregatibacter aphrophilus NJ8700]
Length = 416
Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V E ++ + + P+ ++VN + K G+ Q ++
Sbjct: 124 VESEAELLRINEVARRLGKTAPISLRVNPDVDAHTHPYISTGLKENKFGVSVEQAREVYK 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ ++ L L +G
Sbjct: 184 LAATLPNIEIVGMDCHIGSQLTELQPFLDAVDRLIVLMEQLKQDGIALKHLDLG 237
>gi|110597832|ref|ZP_01386115.1| alanine racemase [Chlorobium ferrooxidans DSM 13031]
gi|110340557|gb|EAT59040.1| alanine racemase [Chlorobium ferrooxidans DSM 13031]
Length = 383
Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 38/206 (18%), Positives = 68/206 (33%), Gaps = 35/206 (16%)
Query: 37 VDSKKIRVALSC-GQVIFAENKLQEAKK-KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF 94
+ K+ AL G F + EA + K K L F L S+ +
Sbjct: 56 HNVHKVSAALETIGITDFGVANIHEAIELKTGGALKNPASILAFSSPLTSHIECFLQHDI 115
Query: 95 DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ 154
D+ T+ +T ++ L V ++V+TG + G P+ + +
Sbjct: 116 DM--TLCDSETLQAAEEIAAAHNKTLSVQLKVDTGM--GRLGTHPSMAMELLRCMENAEH 171
Query: 155 LNVEGLMCIPPAMGNPKPHFY-LLSEIARECKLTKLSMGMTRDFELAI-----ASGAT-- 206
L ++G+ +P L+E R +T ++E A+ A
Sbjct: 172 LQLKGIYTHFADSSSPGGFTAQQLAEFKR----------LTSEYEHAVSRTVCKHAANSG 221
Query: 207 -----------SVRIGSGIFGERPCQ 221
VR G ++G P +
Sbjct: 222 AILTAPGSWLDMVRPGILLYGYHPAK 247
>gi|83643199|ref|YP_431634.1| diaminopimelate decarboxylase [Hahella chejuensis KCTC 2396]
gi|83631242|gb|ABC27209.1| diaminopimelate decarboxylase [Hahella chejuensis KCTC 2396]
Length = 423
Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 22/154 (14%)
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRF 119
E ++ K + +G L+ + V L +
Sbjct: 85 EMERVLAAGGKPERIVFSGVGKLEHEMRRALEVGVHCFN-VESAPELERLQQVAADMGKK 143
Query: 120 LPVYIQVNTGYEIQ------------KSGIMPNQTKDFVILCRQKYQLNVEGLMC----- 162
P+ I+VN + Q K G+ ++ + L+V G+ C
Sbjct: 144 APISIRVNPDVDPQTHPYISTGLKENKFGVSIDEALELYHSAAVSPHLDVIGIDCHIGSQ 203
Query: 163 ---IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
I P + + ++ + E +L L +G
Sbjct: 204 LTQISPFLDALERVLNIIETLRNEGIRLKHLDLG 237
>gi|95930765|ref|ZP_01313498.1| alanine racemase [Desulfuromonas acetoxidans DSM 684]
gi|95133245|gb|EAT14911.1| alanine racemase [Desulfuromonas acetoxidans DSM 684]
Length = 371
Score = 40.4 bits (94), Expect = 0.19, Method: Composition-based stats.
Identities = 29/212 (13%), Positives = 67/212 (31%), Gaps = 33/212 (15%)
Query: 29 SLVAVSKM-------VDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGS 81
++AV K V + G +F ++E + + +G
Sbjct: 32 RMLAVVKADAYGHGAVPVARTLE--EAGADLFGVAIVEEGLELRAAGITRPIL---MLGG 86
Query: 82 LQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ 141
+ ++ D+ V + L + + ++++++G + G+ Q
Sbjct: 87 PWPGQEPVVIEH-DLHVAVFEIEQLQRLEHAARQAGKSCFCHLKIDSGM--GRLGVRDEQ 143
Query: 142 TKDFVILCRQKYQLNVEGLMCI--------PPAMGNPKPHF-YLLSEIARECKLTKL--- 189
+ + L + G+M P + HF L+++ + +
Sbjct: 144 LDEVLRFFLASEALQLVGIMTHFALADCPDHPLTAQQQAHFKRALAKVRDAGLIPEYIHS 203
Query: 190 --SMGMTRDFELAIASGATSVRIGSGIFGERP 219
S D + G VR G ++G +P
Sbjct: 204 SNSAATFSD----VNGGCNLVRPGIALYGGQP 231
>gi|163741227|ref|ZP_02148619.1| hypothetical protein RG210_17245 [Phaeobacter gallaeciensis 2.10]
gi|161385580|gb|EDQ09957.1| hypothetical protein RG210_17245 [Phaeobacter gallaeciensis 2.10]
Length = 828
Score = 40.4 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 11/72 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN-----------TGYEIQKSGIMPNQTKDFVIL 148
V + + +Q R + ++VN + GI ++ D +
Sbjct: 117 VESAHELTQIDALARQQGRVQNIALRVNPDFHAGGAKLNMSGRPTQFGIDQSELPDVLKQ 176
Query: 149 CRQKYQLNVEGL 160
L + GL
Sbjct: 177 AESCAHLRLCGL 188
>gi|54303507|ref|YP_133500.1| amino acid racemase [Photobacterium profundum SS9]
gi|46916937|emb|CAG23700.1| hypothetical amino acid racemase [Photobacterium profundum SS9]
Length = 361
Score = 40.4 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 41/198 (20%), Positives = 75/198 (37%), Gaps = 24/198 (12%)
Query: 38 DSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVI 97
+ RV LS G + ++++ E + R + I S ++V IV+ D+
Sbjct: 44 SPEIARVLLSAGVNMIGDSRI-ENIETMR--RAGVAAPMILIRSPMLSQVDRIVTHADL- 99
Query: 98 ETVSR-EKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156
+++ S LS R V + V G + GIMP +D V + +
Sbjct: 100 -SLNTELDVISKLSSAAKAAGRKHGVVLMVELG--DLREGIMPADLEDTVRQVLRLPNIA 156
Query: 157 VEGLMCIPPAMGNPKPHFYLLSEIAR---------ECKLTKLSMGMTRDFELAIASGA-- 205
+ G+ P +SE++ L +S G + + + A+ GA
Sbjct: 157 LRGIGANLACHSGVSPDTRNMSELSALVDSIEAVFGLTLDIVSGGNSANLDWALG-GADA 215
Query: 206 ---TSVRIG-SGIFGERP 219
++R+G S + G P
Sbjct: 216 GRINNLRLGESVLLGCEP 233
>gi|329113263|ref|ZP_08242046.1| Alanine racemase, catabolic [Acetobacter pomorum DM001]
gi|326697404|gb|EGE49062.1| Alanine racemase, catabolic [Acetobacter pomorum DM001]
Length = 381
Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 15/129 (11%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
++ + ++L K + L V IQ++TG + G+ + L+V
Sbjct: 119 LNSLEQIAVLRELAAKIDKPLDVAIQLDTGM--SRFGLSEADIHKLAVSPELLEGLSVSL 176
Query: 160 LMCIPPAMGNPKP-----HFYLLSEIARECKLTKLSMGMTRDFELAIASGA----TSVRI 210
+M PK AR LS+ + I G+ VR
Sbjct: 177 VMSHLACADTPKNPANTMQRERFEAYARMLPKATLSLSASS----GIFLGSQFQFDLVRP 232
Query: 211 GSGIFGERP 219
G+ ++G P
Sbjct: 233 GAALYGVAP 241
>gi|87311059|ref|ZP_01093183.1| hypothetical protein DSM3645_18606 [Blastopirellula marina DSM
3645]
gi|87286150|gb|EAQ78060.1| hypothetical protein DSM3645_18606 [Blastopirellula marina DSM
3645]
Length = 371
Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 26/139 (18%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM-PNQTKDFVILCRQKYQ-LN 156
V S L+ + + + + VN G + ++G+ P + Q L
Sbjct: 112 AVDSAYGVSALAAAAQEAGSTIGILVDVNVG--MNRTGVSTPVEALQLAQQIAQSENSLR 169
Query: 157 VEGLMCIP-----PAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA------ 205
++G+ P PA +P + + +A L + S G++ + ++ G+
Sbjct: 170 LDGIFFYPGHIWRPADEQAEPLRQVDAILAEVITLWE-SHGLSANI---VSGGSTPTAYQ 225
Query: 206 -------TSVRIGSGIFGE 217
T +R G+ IF +
Sbjct: 226 SHLLPSQTEIRPGTNIFND 244
>gi|262172884|ref|ZP_06040562.1| diaminopimelate decarboxylase [Vibrio mimicus MB-451]
gi|261893960|gb|EEY39946.1| diaminopimelate decarboxylase [Vibrio mimicus MB-451]
Length = 417
Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E+ L+ + P+ +++N TG K GI ++ +
Sbjct: 125 VESERELHRLNKVAAELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAEVYR 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
L L+V G L + P + L+ + A + L +G
Sbjct: 185 LAHSLPHLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVG 238
>gi|170724853|ref|YP_001758879.1| diaminopimelate decarboxylase [Shewanella woodyi ATCC 51908]
gi|169810200|gb|ACA84784.1| diaminopimelate decarboxylase [Shewanella woodyi ATCC 51908]
Length = 414
Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 13/94 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L+L +K + PV ++VN + K GI + +
Sbjct: 124 VESAAELEQLNLVALKLGKIAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMDDAEAIFA 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEI 180
L V+G+ C I + KP + I
Sbjct: 184 RAHALPGLQVKGVDCHIGSQLTEIKPFLDAMDRI 217
>gi|288941801|ref|YP_003444041.1| diaminopimelate decarboxylase [Allochromatium vinosum DSM 180]
gi|288897173|gb|ADC63009.1| diaminopimelate decarboxylase [Allochromatium vinosum DSM 180]
Length = 423
Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ------------KSGIMPNQTKDFVI 147
V E + + + PV ++VN + Q K GI + +
Sbjct: 124 VESESELTRIDRIAGELGVRAPVSLRVNPDVDPQTHHYISTGLKENKFGIDIQEAESVYA 183
Query: 148 LCRQKYQLNVEGLMC 162
L L V G+ C
Sbjct: 184 LAAAMPNLKVVGIDC 198
>gi|163859235|ref|YP_001633533.1| hypothetical protein Bpet4914 [Bordetella petrii DSM 12804]
gi|163262963|emb|CAP45266.1| lysA [Bordetella petrii]
Length = 430
Score = 40.0 bits (93), Expect = 0.21, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + LS + V ++VN + K GI D
Sbjct: 137 VESQAELQCLSDVAQSMGQRARVSLRVNPDVDAQTHPYISTGLKENKFGIAIESALDAYR 196
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
L + G+ C I + + P+F L ++
Sbjct: 197 TAAALPGLEIVGVDCHIGSQLTDISPYFDALEKLLD 232
>gi|209693748|ref|YP_002261676.1| diaminopimelate decarboxylase [Aliivibrio salmonicida LFI1238]
gi|208007699|emb|CAQ77810.1| diaminopimelate decarboxylase [Aliivibrio salmonicida LFI1238]
Length = 417
Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++ +
Sbjct: 125 VESEPELERLNAVAEEMGVIAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPEVYK 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
+ LN++G L I P + L+ ++ A+ + L +G
Sbjct: 185 FAQTLPNLNIQGIDCHIGSQLTDITPFIDATDRLLALIDDLKAQGVNIRHLDVG 238
>gi|90581046|ref|ZP_01236846.1| putative diaminopimelate decarboxylase [Vibrio angustum S14]
gi|90437742|gb|EAS62933.1| putative diaminopimelate decarboxylase [Vibrio angustum S14]
Length = 416
Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI+ ++ +
Sbjct: 125 VESEPELERLNAVAEELGVTAPISLRINPDVDAKTHPYISTGLRDNKFGIVFDRAVEVYR 184
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
L L V G+ C I P + L+ E+ A + L +G
Sbjct: 185 LAHSLPHLQVVGMDCHIGSQLTDISPFIDATDRLLALVDELKAEGIHIQHLDLG 238
>gi|224824693|ref|ZP_03697800.1| diaminopimelate decarboxylase [Lutiella nitroferrum 2002]
gi|224603186|gb|EEG09362.1| diaminopimelate decarboxylase [Lutiella nitroferrum 2002]
Length = 413
Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECK 185
NTG E K GI Q D + + R+ + L + GL M I + + L ++
Sbjct: 149 NTGGENSKHGIWHEQLPDALQVIRE-HGLTLVGLHMHIGSGVD-----YGHLQQVCG--A 200
Query: 186 LTKLSMGMTRDFELAIASG 204
+ +L GM D E AI++G
Sbjct: 201 MVELVAGMGHDLE-AISAG 218
>gi|168229736|ref|ZP_02654794.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|194470577|ref|ZP_03076561.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194456941|gb|EDX45780.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|205335840|gb|EDZ22604.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
Length = 465
Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 27/184 (14%)
Query: 33 VSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLRKEWDVQLR-----FIGSLQSNK 86
SK + A+ G EA ++ +RK ++ R F G ++
Sbjct: 78 ASKTCSVMGVLKAIRDAGICA-------EANSQY-EVRKCLEIGFRGDQIVFNGVVKKPA 129
Query: 87 -VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------TGYEI-----QK 134
+ ++ + V + K + V ++V T E+ K
Sbjct: 130 DLEYAIANDLYLINVDSLYELEHIDAISRKLKKVANVCVRVEPNVPSATHAELVTAFHAK 189
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM 193
SG+ Q ++ +++ GL M + + +P + E + + +G+
Sbjct: 190 SGLDLEQAEETCRRILAMPYVHLRGLHMHVGDQVPESEPFAKATKVLVDESRRLEEVLGI 249
Query: 194 TRDF 197
D
Sbjct: 250 KFDL 253
>gi|16765687|ref|NP_461302.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|167993048|ref|ZP_02574143.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|16420903|gb|AAL21261.1| putative diaminopimelate decarboxylase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|205328829|gb|EDZ15593.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|261247566|emb|CBG25393.1| putative amino acid decarboxylase [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267994461|gb|ACY89346.1| putative diaminopimelate decarboxylase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301158918|emb|CBW18431.1| putative amino acid decarboxylase [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312913351|dbj|BAJ37325.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321222938|gb|EFX48009.1| Diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|323130692|gb|ADX18122.1| putative diaminopimelate decarboxylase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|332989293|gb|AEF08276.1| putative diaminopimelate decarboxylase [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 465
Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 27/184 (14%)
Query: 33 VSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLRKEWDVQLR-----FIGSLQSNK 86
SK + A+ G EA ++ +RK ++ R F G ++
Sbjct: 78 ASKTCSVMGVLKAIRDAGICA-------EANSQY-EVRKCLEIGFRGDQIVFNGVVKKPA 129
Query: 87 -VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------TGYEI-----QK 134
+ ++ + V + K + V ++V T E+ K
Sbjct: 130 DLEYAIANDLYLINVDSLYELEHIDAISRKLKKVANVCVRVEPNVPSATHAELVTAFHAK 189
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM 193
SG+ Q ++ +++ GL M + + +P + E + + +G+
Sbjct: 190 SGLDLEQAEETCRRILAMPYVHLRGLHMHVGDQVPESEPFAKATKVLVDESRRLEEVLGI 249
Query: 194 TRDF 197
D
Sbjct: 250 KFDL 253
>gi|330444897|ref|ZP_08308552.1| diaminopimelate decarboxylase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328489207|dbj|GAA03049.1| diaminopimelate decarboxylase [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 416
Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+L + P+ +++N TG K GI + +
Sbjct: 125 VESEPELERLNLVAEQLGVIAPISLRINPDVDAKTHPYISTGLRDNKFGIAFERAVEVYR 184
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
L L V G+ C I P + L+ E+ A + L +G
Sbjct: 185 LAHSLPHLKVVGMDCHIGSQLTEITPFIDATDRLLALVDELKAEGIAIEHLDLG 238
>gi|322806269|emb|CBZ03837.1| putative cytoplasmic protein [Clostridium botulinum H04402 065]
Length = 353
Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 11/160 (6%)
Query: 24 PKDSVSLVAVSKMV-DSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLR-KEWDVQLRFIG 80
K + +VAV+K + KI A+ I A++++ E KK + + + ++L I
Sbjct: 25 KKRGIKVVAVTKTFCGNPKIAKAIAEEKVDILADSRI-ENLKKLVHISLPKMLLRLPMI- 82
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
++V E+V D I VS T LS E IKQ++ + + ++ G ++++
Sbjct: 83 ----SQVEEVVKYTD-ISLVSDIITIRELSREAIKQNKIHSIILMIDLG-DLREGIFNEE 136
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ V + + G+ G P + LS++
Sbjct: 137 EIYIAVKEILNFKNVKLMGIGTNLSCYGGVIPTYENLSQL 176
>gi|73763191|gb|AAZ83975.1| alanine racemase [Pseudomonas putida]
Length = 409
Score = 40.0 bits (93), Expect = 0.22, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 53/142 (37%), Gaps = 14/142 (9%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT--KDFVILCRQ 151
+D+ E V + A L + + L +++ +N+ + ++G+ + +
Sbjct: 135 YDMEELVGSAEFARQLDAIAERHGKTLRIHMALNSSG-MSRNGVEMTTWSGRGEALQITD 193
Query: 152 KYQLNVEGLMC--IPPAMGNPKPHFYLLSE----IARECKLT--KLSMGMTRDF--ELAI 201
+ L + LM + + +E + + KL KL++ F
Sbjct: 194 QKHLQLVALMTHFAVEDKDDVRKGLAAFNEQTDWLIKHAKLDRSKLTLHAANSFATLEVP 253
Query: 202 ASGATSVRIGSGIFGER-PCQT 222
+ VR G +FG+ P +T
Sbjct: 254 EAHLDMVRTGGALFGDTVPTRT 275
>gi|323140360|ref|ZP_08075291.1| alanine racemase [Phascolarctobacterium sp. YIT 12067]
gi|322415164|gb|EFY05952.1| alanine racemase [Phascolarctobacterium sp. YIT 12067]
Length = 372
Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats.
Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 24/230 (10%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKI-RVALSCGQVIFAENKLQE 60
L ++ + A + L AV K + ++ + A G FA LQE
Sbjct: 12 NLDAVAHNVQMA--KANLKPTT-KLCAVVKADAYGHGAVRVAQEAARNGADFFAVALLQE 68
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K E + +GS+ +V+EI +D+ V E+ L+ +K
Sbjct: 69 GV-KLREAGIETPIL--VLGSM-LPEVAEICVRYDISHAVFDEERLYALNAAALKLHTKA 124
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSE 179
++I+++TG + G+ F L + +EG+ A + K + E
Sbjct: 125 KIHIKIDTGM--HRIGVHVRDAGRFAKLAASLPGIYIEGVFSHFATADADDKQYAAYQFE 182
Query: 180 IARE-CKLTKLSMGMTRDFELAIASGAT--------SVRIGSGIFGERPC 220
+E +L + +A ++ T VR G ++G P
Sbjct: 183 RFQEALRLIEAEGVHIPIRHIANSAALTELQEYQLDMVRQGITLYGLHPA 232
>gi|30249905|ref|NP_841975.1| Orn/DAP/Arg decarboxylase family protein [Nitrosomonas europaea
ATCC 19718]
gi|30180942|emb|CAD85868.1| Orn/DAP/Arg decarboxylases family 2 [Nitrosomonas europaea ATCC
19718]
Length = 417
Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 20/102 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V E +L+ + + PV ++VN + K GI +
Sbjct: 127 VESEMELMVLNEIAGQMGKIAPVSLRVNPDVDANTHPYISTGMKENKFGIPAAEAGRIYS 186
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIA 181
L Q + V GL C I P + LL+ +
Sbjct: 187 LAHQLPHIQVSGLDCHIGSQLTEIAPFIEAADKMLDLLARLQ 228
>gi|331268600|ref|YP_004395092.1| alanine racemase [Clostridium botulinum BKT015925]
gi|329125150|gb|AEB75095.1| alanine racemase [Clostridium botulinum BKT015925]
Length = 387
Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 95 DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKY 153
D+ +TV + A LS K + + ++I V+TG + G +PN ++ V
Sbjct: 99 DIEQTVFSLEYAKQLSGVAEKMHKKIKIHIAVDTGM--GRIGFLPNKESVQDVKKISNLP 156
Query: 154 QLNVEGLMCIPPAMGNPKPHF-----YLLSEIARECK 185
+ ++G+ + +E E K
Sbjct: 157 NVEIKGIFTHFSTADESNKEYTYYQLKKFNEFYDELK 193
>gi|148238739|ref|YP_001224126.1| alanine racemase [Synechococcus sp. WH 7803]
gi|147847278|emb|CAK22829.1| Alanine racemase [Synechococcus sp. WH 7803]
Length = 393
Score = 40.0 bits (93), Expect = 0.23, Method: Composition-based stats.
Identities = 39/209 (18%), Positives = 71/209 (33%), Gaps = 27/209 (12%)
Query: 30 LVAVSK----MVDSKKI-RVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSL-Q 83
L+AV K ++ + R A+ G LQE + R ++ + +G+L Q
Sbjct: 52 LMAVVKADGYGHGAETVARAAICGGATSLGVATLQEGIE---LRRAGLELPVLVLGNLIQ 108
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
+ + ++ T+S + A L R V Q+ + + G
Sbjct: 109 VEDLRACLHW-QLMPTLSSMREALLCQNLASGSGRRFAV--QLKLDTGMTRLGCDWQDGS 165
Query: 144 DFVILCRQKYQLNVEGL-----MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFE 198
+Q QL + G+ + G+ + L E S + F
Sbjct: 166 RLTQAIQQLDQLILRGVYSHLALADGGPSGDAERITRLQQERFEAVTRAHRSDNLQ--FH 223
Query: 199 LAIASGA--------TSVRIGSGIFGERP 219
LA ++G VR+G ++G P
Sbjct: 224 LANSAGTLRDRSLHHDQVRVGLALYGHAP 252
>gi|315635221|ref|ZP_07890498.1| diaminopimelate decarboxylase [Aggregatibacter segnis ATCC 33393]
gi|315475967|gb|EFU66722.1| diaminopimelate decarboxylase [Aggregatibacter segnis ATCC 33393]
Length = 416
Score = 40.0 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V E ++ + + P+ ++VN + K G+ Q ++
Sbjct: 124 VESEAELLRINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVEQAREVYK 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ ++ L L +G
Sbjct: 184 LAATLPNIKIVGMDCHIGSQLTELQPFLDAVDRLIVLMEQLNQDGIHLKHLDLG 237
>gi|89074449|ref|ZP_01160926.1| putative diaminopimelate decarboxylase [Photobacterium sp. SKA34]
gi|89049737|gb|EAR55287.1| putative diaminopimelate decarboxylase [Photobacterium sp. SKA34]
Length = 416
Score = 40.0 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI+ ++ +
Sbjct: 125 VESEPELERLNAVAEELGVTAPISLRINPDVDAKTHPYISTGLRDNKFGIVFDRAVEVYR 184
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
L L V G+ C I P + L+ E+ A + L +G
Sbjct: 185 LAHSLPHLQVVGMDCHIGSQLTDITPFIDATDRLLALVDELKAEGIHIQHLDLG 238
>gi|146298434|ref|YP_001193025.1| alanine racemase domain-containing protein [Flavobacterium
johnsoniae UW101]
gi|146152852|gb|ABQ03706.1| alanine racemase domain protein [Flavobacterium johnsoniae UW101]
Length = 371
Score = 40.0 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVE 158
V ++A L+ + + L VY+ +NTG ++G + + + L+ E
Sbjct: 117 VDNLESAKALNETAKENNLKLNVYLDLNTGM--NRTGFSISQDWTALIDKIVKLKNLHFE 174
Query: 159 GLMCIPPAM-GNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASG 204
G+ + G + + S E K ++G +EL I +G
Sbjct: 175 GIHIYDGHLKGTVEERTHTASNSFSEIKEKAEAIGEKLGYELKIVAG 221
>gi|192360548|ref|YP_001983745.1| diaminopimelate decarboxylase [Cellvibrio japonicus Ueda107]
gi|190686713|gb|ACE84391.1| diaminopimelate decarboxylase [Cellvibrio japonicus Ueda107]
Length = 415
Score = 40.0 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V E LL+ + + V ++VN + K GI +
Sbjct: 124 VESEAELELLAQVAADKGKVANVSLRVNPDVDANTHPYISTGLKENKFGIAIERAPAVYA 183
Query: 148 LCRQKYQLNVEGLMC 162
Q L ++GL C
Sbjct: 184 RAAQLPSLAIKGLDC 198
>gi|168465929|ref|ZP_02699799.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|195631146|gb|EDX49706.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
Length = 465
Score = 40.0 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 27/184 (14%)
Query: 33 VSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLRKEWDVQLR-----FIGSLQSNK 86
SK + A+ G EA ++ +RK ++ R F G ++
Sbjct: 78 ASKTCSVMGVLKAIRDAGICA-------EANSQY-EVRKCLEIGFRGDQIVFNGVVKKPA 129
Query: 87 -VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------TGYEI-----QK 134
+ ++ + V + K + V ++V T E+ K
Sbjct: 130 DLEYAIANDLYLINVDSLYELEHIDAISRKLKKVANVCVRVEPNVPSATHAELVTAFHAK 189
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM 193
SG+ Q ++ +++ GL M + + +P + E + + +G+
Sbjct: 190 SGLDLEQAEETCRRILAMPYVHLRGLHMHVGDQVPESEPFAKATKVLVDESRRLEEVLGI 249
Query: 194 TRDF 197
D
Sbjct: 250 KFDL 253
>gi|16761285|ref|NP_456902.1| amino acid decarboxylase [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29141019|ref|NP_804361.1| amino acid decarboxylase [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56412743|ref|YP_149818.1| amino acid decarboxylase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|168242485|ref|ZP_02667417.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168817903|ref|ZP_02829903.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|194445823|ref|YP_002041624.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194447678|ref|YP_002046416.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|197247933|ref|YP_002147321.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197361677|ref|YP_002141313.1| amino acid decarboxylase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|204929227|ref|ZP_03220370.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|213161327|ref|ZP_03347037.1| putative amino acid decarboxylase [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213426984|ref|ZP_03359734.1| putative amino acid decarboxylase [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213621623|ref|ZP_03374406.1| putative amino acid decarboxylase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213852682|ref|ZP_03382214.1| putative amino acid decarboxylase [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|238912361|ref|ZP_04656198.1| putative amino acid decarboxylase [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|289827480|ref|ZP_06546092.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|25512762|pir||AF0801 probable amino acid decarboxylase STY2590 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16503584|emb|CAD07592.1| putative amino acid decarboxylase [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29136644|gb|AAO68210.1| putative amino acid decarboxylase [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56127000|gb|AAV76506.1| putative amino acid decarboxylase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|194404486|gb|ACF64708.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194405982|gb|ACF66201.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|197093153|emb|CAR58597.1| putative amino acid decarboxylase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197211636|gb|ACH49033.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|204321771|gb|EDZ06970.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205338587|gb|EDZ25351.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205344959|gb|EDZ31723.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|320086795|emb|CBY96567.1| putative amino acid decarboxylase [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|322617105|gb|EFY14011.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322617589|gb|EFY14488.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322624781|gb|EFY21610.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322630331|gb|EFY27101.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322634511|gb|EFY31244.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322639222|gb|EFY35914.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322640085|gb|EFY36752.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322645695|gb|EFY42219.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322652059|gb|EFY48422.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322656231|gb|EFY52528.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322659383|gb|EFY55630.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322665843|gb|EFY62026.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322669918|gb|EFY66059.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322673903|gb|EFY70000.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322678662|gb|EFY74718.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322683543|gb|EFY79557.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322687618|gb|EFY83588.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323193547|gb|EFZ78752.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323198454|gb|EFZ83556.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323204566|gb|EFZ89569.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323208496|gb|EFZ93435.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323213633|gb|EFZ98422.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323218331|gb|EGA03041.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323222914|gb|EGA07263.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323224511|gb|EGA08793.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323232326|gb|EGA16429.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323235640|gb|EGA19724.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323241200|gb|EGA25236.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323244942|gb|EGA28944.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323250061|gb|EGA33955.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323253845|gb|EGA37670.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323254982|gb|EGA38773.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323259831|gb|EGA43463.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323264148|gb|EGA47655.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323270846|gb|EGA54284.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
Length = 465
Score = 40.0 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 27/184 (14%)
Query: 33 VSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLRKEWDVQLR-----FIGSLQSNK 86
SK + A+ G EA ++ +RK ++ R F G ++
Sbjct: 78 ASKTCSVMGVLKAIRDAGICA-------EANSQY-EVRKCLEIGFRGDQIVFNGVVKKPA 129
Query: 87 -VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------TGYEI-----QK 134
+ ++ + V + K + V ++V T E+ K
Sbjct: 130 DLEYAIANDLYLINVDSLYELEHIDAISRKLKKVANVCVRVEPNVPSATHAELVTAFHAK 189
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM 193
SG+ Q ++ +++ GL M + + +P + E + + +G+
Sbjct: 190 SGLDLEQAEETCRRILAMPYVHLRGLHMHVGDQVPESEPFAKATKVLVDESRRLEEVLGI 249
Query: 194 TRDF 197
D
Sbjct: 250 KFDL 253
>gi|330879043|gb|EGH13192.1| diaminopimelate decarboxylase [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 402
Score = 40.0 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------ 127
G L S+ S +++ + + + L + R PV+I++N
Sbjct: 99 GKLDSDLRSALLNKVEAVH-LESLNEIQRLQHLAEQTGRVQPVFIRINPQLPAAQSSKLA 157
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
GI + V L L ++G
Sbjct: 158 MAGTATPFGIDEADLAEAVRLVDSATHLTLKGF 190
>gi|291617494|ref|YP_003520236.1| Hypothetical Protein PANA_1941 [Pantoea ananatis LMG 20103]
gi|291152524|gb|ADD77108.1| Hypothetical Protein PANA_1941 [Pantoea ananatis LMG 20103]
Length = 388
Score = 40.0 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 45/130 (34%), Gaps = 21/130 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ--TKDFVILCRQKYQLNV 157
+ A +S ++ V+I+++ + GI P+ + Q + + V
Sbjct: 120 LDSMAQAQAISDYALQHQVTFSVFIEIDCDG--HRGGIRPDDGTLAEIAGHLHQ-HGMVV 176
Query: 158 EGLMCIPPAMGNPKPHFYLLSEIARECKL---------------TKLSMGMTRDFELAIA 202
EG+M + + + +EC+ +S+G T A
Sbjct: 177 EGVMTHAGESYHCRTPQDIQRAAQQECQAAITAAQHIRAAGIPCPVVSVGSTPTAHAATD 236
Query: 203 -SGATSVRIG 211
SG T VR G
Sbjct: 237 LSGVTEVRAG 246
>gi|200386842|ref|ZP_03213454.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|199603940|gb|EDZ02485.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
Length = 465
Score = 40.0 bits (93), Expect = 0.24, Method: Composition-based stats.
Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 27/184 (14%)
Query: 33 VSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLRKEWDVQLR-----FIGSLQSNK 86
SK + A+ G EA ++ +RK ++ R F G ++
Sbjct: 78 ASKTCSVMGVLKAIRDAGICA-------EANSQY-EVRKCLEIGFRGDQIVFNGVVKKPA 129
Query: 87 -VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------TGYEI-----QK 134
+ ++ + V + K + V ++V T E+ K
Sbjct: 130 DLEYAIANDLYLINVDSLYELEHIDAISRKLKKVANVCVRVEPNVPSATHAELVTAFHAK 189
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM 193
SG+ Q ++ +++ GL M + + +P + E + + +G+
Sbjct: 190 SGLDLEQAEETCRRILAMPYVHLRGLHMHVGDQVPESEPFAKATKVLVDESRRLEEVLGI 249
Query: 194 TRDF 197
D
Sbjct: 250 KFDL 253
>gi|167549634|ref|ZP_02343393.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205325203|gb|EDZ13042.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
Length = 465
Score = 40.0 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 27/184 (14%)
Query: 33 VSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLRKEWDVQLR-----FIGSLQSNK 86
SK + A+ G EA ++ +RK ++ R F G ++
Sbjct: 78 ASKTCSVMGVLKAIRDAGICA-------EANSQY-EVRKCLEIGFRGDQIVFNGVVKKPA 129
Query: 87 -VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------TGYEI-----QK 134
+ ++ + V + K + V ++V T E+ K
Sbjct: 130 DLEYAIANDLYLINVDSLYELEHIDAISRKLKKVANVCVRVEPNVPSATHAELVTAFHAK 189
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM 193
SG+ Q ++ +++ GL M + + +P + E + + +G+
Sbjct: 190 SGLDLEQAEETCRRILAMPYVHLRGLHMHVGDQVPESEPFAKATKVLVDESRRLEEVLGI 249
Query: 194 TRDF 197
D
Sbjct: 250 KFDL 253
>gi|161612905|ref|YP_001586870.1| hypothetical protein SPAB_00611 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|198242305|ref|YP_002216433.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|207857778|ref|YP_002244429.1| amino acid decarboxylase [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|161362269|gb|ABX66037.1| hypothetical protein SPAB_00611 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197936821|gb|ACH74154.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|206709581|emb|CAR33926.1| putative amino acid decarboxylase [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
Length = 465
Score = 40.0 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 27/184 (14%)
Query: 33 VSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLRKEWDVQLR-----FIGSLQSNK 86
SK + A+ G EA ++ +RK ++ R F G ++
Sbjct: 78 ASKTCSVMGVLKAIRDAGICA-------EANSQY-EVRKCLEIGFRGDQIVFNGVVKKPA 129
Query: 87 -VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------TGYEI-----QK 134
+ ++ + V + K + V ++V T E+ K
Sbjct: 130 DLEYAIANDLYLINVDSLYELEHIDAISRKLKKVANVCVRVEPNVPSATHAELVTAFHAK 189
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM 193
SG+ Q ++ +++ GL M + + +P + E + + +G+
Sbjct: 190 SGLDLEQAEETCRRILAMPYVHLRGLHMHVGDQVPESEPFAKATKVLVDESRRLEEVLGI 249
Query: 194 TRDF 197
D
Sbjct: 250 KFDL 253
>gi|168261617|ref|ZP_02683590.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|197265590|ref|ZP_03165664.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197243845|gb|EDY26465.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|205349442|gb|EDZ36073.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
Length = 465
Score = 40.0 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 27/184 (14%)
Query: 33 VSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLRKEWDVQLR-----FIGSLQSNK 86
SK + A+ G EA ++ +RK ++ R F G ++
Sbjct: 78 ASKTCSVMGVLKAIRDAGICA-------EANSQY-EVRKCLEIGFRGDQIVFNGVVKKPA 129
Query: 87 -VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------TGYEI-----QK 134
+ ++ + V + K + V ++V T E+ K
Sbjct: 130 DLEYAIANDLYLINVDSLYELEHIDAISRKLKKVANVCVRVEPNVPSATHAELVTAFHAK 189
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM 193
SG+ Q ++ +++ GL M + + +P + E + + +G+
Sbjct: 190 SGLDLEQAEETCRRILAMPYVHLRGLHMHVGDQVPESEPFAKATKVLVDESRRLEEVLGI 249
Query: 194 TRDF 197
D
Sbjct: 250 KFDL 253
>gi|157364143|ref|YP_001470910.1| alanine racemase domain-containing protein [Thermotoga lettingae
TMO]
gi|157314747|gb|ABV33846.1| alanine racemase domain protein [Thermotoga lettingae TMO]
Length = 356
Score = 40.0 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 43/209 (20%), Positives = 77/209 (36%), Gaps = 26/209 (12%)
Query: 24 PKDSVSLVAVSKMV--DSKKIRVALSCGQVIFAENKLQEAKK--KWIPLRKEWDVQLRFI 79
K +V L+ V+K+ D + + + G I E++++ K+ K R +++ I
Sbjct: 23 SKHNVELIGVTKVSLGDPQVAQCIRNAGVNIIGESRVENIKRMVKSGINRPFMMLRIPAI 82
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP 139
L+ EIV L D I VS KT + + + + V+ G + G+
Sbjct: 83 SQLE-----EIVDLCDYI-LVSELKTVEAIEEICKNAGKSVNLIYMVDVG--DLREGVWY 134
Query: 140 NQT-KDFVILCRQKYQLNVEGLMC-------IPPAMGNPKPHFYLLSEIAR--ECKLTKL 189
Q ++ + + G+ I P N Y+ +I + L +
Sbjct: 135 KQAEEEICKAVKICKTSRIIGVGTNLGCYGGILPTNENMAKLVYIRDKIEQRTNTHLPIV 194
Query: 190 SMGMTRDFELA----IASGATSVRIGSGI 214
S G T L + G R+G I
Sbjct: 195 SGGNTAALRLLEHSDLPEGVNQYRVGEAI 223
>gi|323495294|ref|ZP_08100375.1| diaminopimelate decarboxylase [Vibrio brasiliensis LMG 20546]
gi|323310471|gb|EGA63654.1| diaminopimelate decarboxylase [Vibrio brasiliensis LMG 20546]
Length = 417
Score = 40.0 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 13/86 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + + P+ +++N TG K GI +
Sbjct: 125 VESEPELERLNKVAGELGKKAPISLRINPDVDANTHPYISTGLRDNKFGIAFERAPAVYK 184
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKP 172
+ L+V G+ C I + + +P
Sbjct: 185 FAQSLEHLDVRGIDCHIGSQLTDIEP 210
>gi|326624185|gb|EGE30530.1| putative amino acid decarboxylase [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
Length = 460
Score = 40.0 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 27/184 (14%)
Query: 33 VSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLRKEWDVQLR-----FIGSLQSNK 86
SK + A+ G EA ++ +RK ++ R F G ++
Sbjct: 73 ASKTCSVMGVLKAIRDAGICA-------EANSQY-EVRKCLEIGFRGDQIVFNGVVKKPA 124
Query: 87 -VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------TGYEI-----QK 134
+ ++ + V + K + V ++V T E+ K
Sbjct: 125 DLEYAIANDLYLINVDSLYELEHIDAISRKLKKVANVCVRVEPNVPSATHAELVTAFHAK 184
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM 193
SG+ Q ++ +++ GL M + + +P + E + + +G+
Sbjct: 185 SGLDLEQAEETCRRILAMPYVHLRGLHMHVGDQVPESEPFAKATKVLVDESRRLEEVLGI 244
Query: 194 TRDF 197
D
Sbjct: 245 KFDL 248
>gi|270635225|ref|ZP_06222074.1| diaminopimelate decarboxylase [Haemophilus influenzae HK1212]
gi|270317426|gb|EFA28931.1| diaminopimelate decarboxylase [Haemophilus influenzae HK1212]
Length = 217
Score = 40.0 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 24/117 (20%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKD 144
+E+VS K ++ + + P+ ++VN + K G+ N+ +
Sbjct: 13 VESVSELKH---INQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEARK 69
Query: 145 FVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ + L L +G
Sbjct: 70 VYNLASTLPNIKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLG 126
>gi|205353474|ref|YP_002227275.1| amino acid decarboxylase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205273255|emb|CAR38219.1| putative amino acid decarboxylase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|326628567|gb|EGE34910.1| putative amino acid decarboxylase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 465
Score = 40.0 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 27/184 (14%)
Query: 33 VSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLRKEWDVQLR-----FIGSLQSNK 86
SK + A+ G EA ++ +RK ++ R F G ++
Sbjct: 78 ASKTCSVMGVLKAIRDAGICA-------EANSQY-EVRKCLEIGFRGDQIVFNGVVKKPA 129
Query: 87 -VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------TGYEI-----QK 134
+ ++ + V + K + V ++V T E+ K
Sbjct: 130 DLEYAIANDLYLINVDSLYELEHIDAISRKLKKVANVCVRVEPNVPSATHAELVTAFHAK 189
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM 193
SG+ Q ++ +++ GL M + + +P + E + + +G+
Sbjct: 190 SGLDLEQAEETCRRILAMPYVHLRGLHMHVGDQVPESEPFAKATKVLVDESRRLEEVLGI 249
Query: 194 TRDF 197
D
Sbjct: 250 KFDL 253
>gi|161502495|ref|YP_001569607.1| hypothetical protein SARI_00539 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160863842|gb|ABX20465.1| hypothetical protein SARI_00539 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 465
Score = 40.0 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 27/184 (14%)
Query: 33 VSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLRKEWDVQLR-----FIGSLQSNK 86
SK + A+ G EA ++ +RK ++ R F G ++
Sbjct: 78 ASKTCSVMGVLKAIRDAGICA-------EANSQY-EVRKCLEIGFRGDQIVFNGVVKKPA 129
Query: 87 -VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------TGYEI-----QK 134
+ ++ + V + K + V ++V T E+ K
Sbjct: 130 DLEYAIANDLYLINVDSLYELEHIDAISRKLKKVANVCVRVEPNVPSATHAELVTAFHAK 189
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM 193
SG+ Q ++ +++ GL M + + +P + E + + +G+
Sbjct: 190 SGLDLEQAEETCRRILAMPYVHLRGLHMHVGDQVPESEPFAKATKVLVDESRRLEEVLGI 249
Query: 194 TRDF 197
D
Sbjct: 250 KFDL 253
>gi|62180932|ref|YP_217349.1| putative diaminopimelate decarboxylase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|62128565|gb|AAX66268.1| putative diaminopimelate decarboxylase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|322715411|gb|EFZ06982.1| putative diaminopimelate decarboxylase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 465
Score = 40.0 bits (93), Expect = 0.26, Method: Composition-based stats.
Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 27/184 (14%)
Query: 33 VSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLRKEWDVQLR-----FIGSLQSNK 86
SK + A+ G EA ++ +RK ++ R F G ++
Sbjct: 78 ASKTCSVMGVLKAIRDAGICA-------EANSQY-EVRKCLEIGFRGDQIVFNGVVKKPA 129
Query: 87 -VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------TGYEI-----QK 134
+ ++ + V + K + V ++V T E+ K
Sbjct: 130 DLEYAIANDLYLINVDSLYELEHIDAISRKLKKVANVCVRVEPNVPSATHAELVTAFHAK 189
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM 193
SG+ Q ++ +++ GL M + + +P + E + + +G+
Sbjct: 190 SGLDLEQAEETCRRILAMPYVHLRGLHMHVGDQVPESEPFAKATKVLVDESRRLEEVLGI 249
Query: 194 TRDF 197
D
Sbjct: 250 KFDL 253
>gi|229015244|ref|ZP_04172279.1| Alanine racemase [Bacillus mycoides DSM 2048]
gi|228746046|gb|EEL96014.1| Alanine racemase [Bacillus mycoides DSM 2048]
Length = 340
Score = 40.0 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 33/155 (21%)
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFV 146
+ +V +D+ +++ + A LS + V+++V+TG + G+ + DF+
Sbjct: 59 ANHVV-YWDLTQSIFDIEHAEALSTSGQILGKKAKVHVKVDTGM--GRLGLQAEEASDFI 115
Query: 147 ILCRQKYQLNVEGLMCIPPAMGNPKPHF---------YLLSEIARE----------CKLT 187
+ + L +EG+ + LL E+ +
Sbjct: 116 HIVSRMDGLYLEGVYSHFATADEADKRYAEKQKNRWKRLLEELEKRKVSIPLFHIANSAA 175
Query: 188 KLSM-GMTRDFELAIASGATSVRIGSGIFGERPCQ 221
+ M MT D VRIG ++G P +
Sbjct: 176 TIEMPDMTYD----------MVRIGISMYGLYPSK 200
>gi|284041650|ref|YP_003391990.1| alanine racemase domain protein [Conexibacter woesei DSM 14684]
gi|283945871|gb|ADB48615.1| alanine racemase domain protein [Conexibacter woesei DSM 14684]
Length = 372
Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 46/138 (33%), Gaps = 20/138 (14%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN--QTKDFVILCRQKYQLN 156
V +TA+ +S + + V ++V+TG + G+ P + L
Sbjct: 112 AVDAVETATGISDAVAAAGVEVGVRVEVDTGM--HRLGLEPASAALVELARAVAALPGLR 169
Query: 157 VEGLMCIPPAMGNPKPHFYLLSEIARECKL---------------TKLSMGMTRDFELAI 201
EG+M L A C+ +SMG T A
Sbjct: 170 FEGVMTHEGQAYQAASEAELERAAADACEAMVASAAAIRAAGVDCPVVSMGSTATARFAA 229
Query: 202 AS-GATSVRIGSGIFGER 218
G T +R G+ +F +R
Sbjct: 230 GHPGVTEIRPGTYVFNDR 247
>gi|291612946|ref|YP_003523103.1| diaminopimelate decarboxylase [Sideroxydans lithotrophicus ES-1]
gi|291583058|gb|ADE10716.1| diaminopimelate decarboxylase [Sideroxydans lithotrophicus ES-1]
Length = 433
Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L+ + PV ++VN + K G+ + +
Sbjct: 125 VESAPELDRLNALAGSMGKVAPVSLRVNPDVDAKTHPYISTGLKQNKFGVAYTEALELYR 184
Query: 148 LCRQKYQLNVEGLMC 162
L V G+ C
Sbjct: 185 KAAAMPNLRVTGMDC 199
>gi|70724836|ref|YP_257046.1| LysA protein [Sodalis glossinidius]
gi|85060454|ref|YP_456155.1| achromobactin biosynthetic and transport gene lysA [Sodalis
glossinidius str. 'morsitans']
gi|68696955|emb|CAI59315.1| LysA protein [Sodalis glossinidius]
gi|68697041|emb|CAI59488.1| LysA protein [Sodalis glossinidius]
gi|84780974|dbj|BAE75750.1| achromobactin biosynthetic and transport gene lysA [Sodalis
glossinidius str. 'morsitans']
Length = 401
Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 35/132 (26%), Gaps = 24/132 (18%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKD 144
I V L +Q R V I++N GI
Sbjct: 116 IH-VESLNEIDRLQRLAREQGRVQTVLIRINPQLPAQISSRLAMAGTATPFGIDEADLAV 174
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE--IARECKLTKLSMGMTRDFELAIA 202
V L ++G + + L E + R + LS A
Sbjct: 175 AVHRVDNADHLVLQGFHVHAMSHQQSEQRHRQLMEYYLQRWPQWKALS---------AQQ 225
Query: 203 SGATSVRIGSGI 214
G T + +G GI
Sbjct: 226 EGITHLNVGGGI 237
>gi|289627600|ref|ZP_06460554.1| hypothetical protein PsyrpaN_21127 [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289648756|ref|ZP_06480099.1| hypothetical protein Psyrpa2_13540 [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330869725|gb|EGH04434.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 402
Score = 39.6 bits (92), Expect = 0.27, Method: Composition-based stats.
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------ 127
G L S+ S +++ + I + + L + R PV++++N
Sbjct: 99 GKLDSDLRSALLNKVEAIH-LESLNEIARLQHLAEETGRVQPVFLRINPQLPAAQSSKLA 157
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
GI + + L ++G
Sbjct: 158 MAGTATPFGIDETDLAEAIRRVDSASHLTLKGF 190
>gi|224826258|ref|ZP_03699360.1| alanine racemase [Lutiella nitroferrum 2002]
gi|224601359|gb|EEG07540.1| alanine racemase [Lutiella nitroferrum 2002]
Length = 379
Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 13/112 (11%)
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-------IPPAM 167
+++R + V+++VNTG + G P + V + V GLM + +
Sbjct: 111 QKARPVTVWVKVNTGM--NRFGFTPERALAVVRQLQATPFCRVAGLMTHFACADQLGTPL 168
Query: 168 GNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
P F ++ L + A GA R+G ++ P
Sbjct: 169 DEPWRRFL---QVVEATGLPYTAANSAALLREARTHGA-VARVGGLLYNNNP 216
>gi|198284522|ref|YP_002220843.1| alanine racemase [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218666734|ref|YP_002427188.1| alanine racemase [Acidithiobacillus ferrooxidans ATCC 23270]
gi|254802357|sp|B7J911|ALR_ACIF2 RecName: Full=Alanine racemase
gi|254802358|sp|B5EP95|ALR_ACIF5 RecName: Full=Alanine racemase
gi|198249043|gb|ACH84636.1| alanine racemase [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218518947|gb|ACK79533.1| alanine racemase [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 364
Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 23/178 (12%)
Query: 2 SLGNKLQVFKQ-----KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAEN 56
+L + + V ++ +I +A+ A V+L A G FA
Sbjct: 13 ALRHNVAVVREHAPRARI-MAAVKANAYGHGVTLCA-----PV-----LAEAGVDAFAVA 61
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
L+EA+ L E + L G +++VS ++ + ++ L
Sbjct: 62 SLEEAEA-LHALGLERPICL-LGGPFDADEVSVAAERAYLL-VIHEQRQLQWLETRAADA 118
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
+ L ++I+V+TG + G P + ++ + V GLM P F
Sbjct: 119 A--LRLFIKVDTGM--HRLGFAPERLPALFAALQRHPRWEVLGLMSHLARSDTPDDPF 172
>gi|330967131|gb|EGH67391.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 402
Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------ 127
G L S+ S +++ + + + L + R PV+I++N
Sbjct: 99 GKLDSDLRSALLNKVEAVH-LESLNEIQRLQHLAEQTGRVQPVFIRINPQLPAAQSSKLA 157
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
GI + V L L ++G
Sbjct: 158 MAGTATPFGIDEADLAEAVRLVDSATHLTLKGF 190
>gi|71734209|ref|YP_274941.1| hypothetical protein PSPPH_2752 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71554762|gb|AAZ33973.1| LysA [Pseudomonas syringae pv. phaseolicola 1448A]
gi|320324164|gb|EFW80244.1| hypothetical protein PsgB076_13342 [Pseudomonas syringae pv.
glycinea str. B076]
gi|320328441|gb|EFW84443.1| hypothetical protein PsgRace4_18243 [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330885703|gb|EGH19852.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 402
Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------ 127
G L S+ S +++ + I + + L + R PV++++N
Sbjct: 99 GKLDSDLRSALLNKVEAIH-LESLNEIARLQHLAEETGRVQPVFLRINPQLPAAQSSKLA 157
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
GI + + L ++G
Sbjct: 158 MAGTATPFGIDETDLAEAIRRVDSASHLTLKGF 190
>gi|149376983|ref|ZP_01894737.1| diaminopimelate decarboxylase [Marinobacter algicola DG893]
gi|149358760|gb|EDM47230.1| diaminopimelate decarboxylase [Marinobacter algicola DG893]
Length = 416
Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + L+ + PV ++VN + K GI +
Sbjct: 124 VESDTELDRLNEVAGELGVRAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIAEAPAVYE 183
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIA-RECKLTKLSMG 192
L+++G L + P + L+ +A + + L MG
Sbjct: 184 RAAAMANLDIQGVDCHIGSQLTSVSPFLDALDRVLELIDTLAKKNINIRHLDMG 237
>gi|15603289|ref|NP_246363.1| hypothetical protein PM1424 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12721800|gb|AAK03508.1| LysA [Pasteurella multocida subsp. multocida str. Pm70]
Length = 416
Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 39/114 (34%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V ++ + + P+ ++VN + K GI + ++
Sbjct: 124 VESVAELYRINQVAGEMGKTAPISLRVNPDVDARTHPYISTGLKENKFGISVAEARNVYQ 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L Q + + G+ C + P + L+ ++ ++ +L L +G
Sbjct: 184 LANQLPHIQITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKQDGIQLKHLDLG 237
>gi|213966939|ref|ZP_03395089.1| Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2
[Pseudomonas syringae pv. tomato T1]
gi|301385124|ref|ZP_07233542.1| Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2
[Pseudomonas syringae pv. tomato Max13]
gi|302059679|ref|ZP_07251220.1| Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2
[Pseudomonas syringae pv. tomato K40]
gi|302131930|ref|ZP_07257920.1| Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2
[Pseudomonas syringae pv. tomato NCPPB 1108]
gi|213928261|gb|EEB61806.1| Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2
[Pseudomonas syringae pv. tomato T1]
Length = 402
Score = 39.6 bits (92), Expect = 0.28, Method: Composition-based stats.
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------ 127
G L S+ S +++ + + + L + R PV+I++N
Sbjct: 99 GKLDSDLRSALLNKVEAVH-LESLNEIQRLQHLAEQTGRVQPVFIRINPQLPAAQSSKLA 157
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
GI + V L L ++G
Sbjct: 158 MAGTATPFGIDEADLAEAVRLVDSATHLTLKGF 190
>gi|114569759|ref|YP_756439.1| alanine racemase [Maricaulis maris MCS10]
gi|114340221|gb|ABI65501.1| alanine racemase [Maricaulis maris MCS10]
Length = 366
Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 32/192 (16%), Positives = 62/192 (32%), Gaps = 23/192 (11%)
Query: 39 SKKIRVALSCGQVIFAENKL---QEAKKKWIPLRKEWDVQLRFIG--SLQSNKVSEIVSL 93
++ + G F + EA++ L F G + ++ ++ SL
Sbjct: 54 AQVVPALADAGCRCF---YVAHTSEAREAREALAGRPADIFVFNGFWPSELAELRQL-SL 109
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY 153
F VI + + + L+ LP I +TG + G+ +T+ + +
Sbjct: 110 FPVINDLQQLEDLRALA-------PDLPCAIHFDTGM--SRLGLDAAETEALLADPARID 160
Query: 154 QLNVEGLMCIPPAMGNP-----KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSV 208
L+V +M +P + I S+ + L A +
Sbjct: 161 ALDVRQIMSHLACSDDPDHPLNEQQRQRFERIRHALPGIPASLSNSTGTLLGQAYHFDML 220
Query: 209 RIGSGIFGERPC 220
R G +F P
Sbjct: 221 RPGLALFSGMPA 232
>gi|225174429|ref|ZP_03728428.1| alanine racemase [Dethiobacter alkaliphilus AHT 1]
gi|225170214|gb|EEG79009.1| alanine racemase [Dethiobacter alkaliphilus AHT 1]
Length = 379
Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 44/235 (18%), Positives = 87/235 (37%), Gaps = 32/235 (13%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
++G+ ++ FKQ + L+A+ K + + R A++ G
Sbjct: 17 AIGHNIRQFKQHV----------SSQTRLMAIVKADGYGHGAVEVAREAVAAGVSFLGVG 66
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
++EA + LR+ I + + +++ TV + A + ++
Sbjct: 67 MVEEALE----LRENGIDTPILILGFTPKAYAPYLCQYNLTPTVFTPEEADAFAEAALRA 122
Query: 117 SRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF- 174
L V+++V+TG + G P F+ L++ GL A +P +
Sbjct: 123 GNDLAVHVKVDTGM--GRVGCFPCEDADGFISHVASLPGLSLTGLYTHFAAADDPDATYT 180
Query: 175 -----YLLSEIAR-ECKLTKLSMGMTRDFELAIASGAT---SVRIGSGIFGERPC 220
L IAR E + + + + AI+ T VR+G ++G P
Sbjct: 181 RWQLERFLKLIARLEARGIHIPVKHAANSAGAISHPETHLDMVRLGISVYGLYPA 235
>gi|104784267|ref|YP_610765.1| diaminopimelate decarboxylase [Pseudomonas entomophila L48]
gi|95113254|emb|CAK17982.1| diaminopimelate decarboxylase [Pseudomonas entomophila L48]
Length = 415
Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 13/94 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + + + PV ++VN + K GI + +
Sbjct: 124 VESSDELERLQVVAAEMGKTAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEAIYV 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEI 180
Q L+V G+ C I + +P L +
Sbjct: 184 RAAQLPNLDVVGVDCHIGSQLTTVEPFLDALDRL 217
>gi|329962467|ref|ZP_08300467.1| alanine racemase [Bacteroides fluxus YIT 12057]
gi|328530023|gb|EGF56911.1| alanine racemase [Bacteroides fluxus YIT 12057]
Length = 834
Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 40/135 (29%), Gaps = 18/135 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
V L E K+ I V + + G P + + + +
Sbjct: 570 VYSFHLLEALIKEAEKEGIT-NFPIHVKVDTGMHRLGFAPEDMPRLIERLKGQNAVIPRS 628
Query: 160 LMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIAS------------GA-- 205
+ +G+ P F + + K SM + F I GA
Sbjct: 629 VFS--HFVGSDAPQFDAFTR-QQIVNFEKASMELQNAFPHKILRHICNSAGIERFPGAQF 685
Query: 206 TSVRIGSGIFGERPC 220
VR+G G++G P
Sbjct: 686 DMVRLGIGLYGVNPV 700
>gi|254508819|ref|ZP_05120930.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus 16]
gi|219548276|gb|EED25290.1| diaminopimelate decarboxylase [Vibrio parahaemolyticus 16]
Length = 417
Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++
Sbjct: 125 VESEPELERLNKVAGQLGVKAPISLRINPDVDANTHPYISTGLRDNKFGIAFDRAPAVYQ 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L+V+G L I P + L+ ++ + + L +G
Sbjct: 185 FAASLENLDVKGIDCHIGSQLTDIEPFIDATDRLLALIDDLKEQGIDIKHLDVG 238
>gi|148547263|ref|YP_001267365.1| alanine racemase [Pseudomonas putida F1]
gi|148511321|gb|ABQ78181.1| alanine racemase [Pseudomonas putida F1]
Length = 409
Score = 39.6 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 27/163 (16%), Positives = 60/163 (36%), Gaps = 19/163 (11%)
Query: 78 FIGSLQSNKVSEIVSL-----FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
F G L +++ + L +D+ E V + A + + L +++ +N+ +
Sbjct: 114 FTGQLVRVRLASLSELEDGLQYDMEELVGSAEFARQADAIAARHGKTLRIHMALNSSG-M 172
Query: 133 QKSGIMPNQT--KDFVILCRQKYQLNVEGLMC--IPPAMGNPKPHFYLLSE----IAREC 184
++G+ + + + L + LM + + +E + +
Sbjct: 173 SRNGVEMATWSGRGEALQITDQKHLKLVALMTHFAVEDKDDVRKGLAAFNEQTDWLIKHA 232
Query: 185 KLT--KLSMGMTRDF--ELAIASGATSVRIGSGIFGER-PCQT 222
KL KL++ F + VR G +FG+ P +T
Sbjct: 233 KLDRSKLTLHAANSFATLEVPEARLDMVRTGGALFGDTVPART 275
>gi|169628346|ref|YP_001701995.1| hypothetical protein MAB_1253c [Mycobacterium abscessus ATCC 19977]
gi|169240313|emb|CAM61341.1| Conserved hypothetical protein (alanine racemase?) [Mycobacterium
abscessus]
Length = 360
Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
++ ++ ++ S + V A L+ + + V I+V++G+ ++G+ P+Q
Sbjct: 98 KARRLRQVASRAALRVAVDSAAGAQQLAEHLGDL--PITVVIEVDSGH--HRTGVAPDQA 153
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNP 170
R LNV G+ P P
Sbjct: 154 GPVAAAARSA-GLNVVGIFTFPGHGYTP 180
>gi|253582195|ref|ZP_04859418.1| serine racemase [Fusobacterium varium ATCC 27725]
gi|251835734|gb|EES64272.1| serine racemase [Fusobacterium varium ATCC 27725]
Length = 369
Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ + A +++ + + I V++G + + G+ N+ +F + L + G
Sbjct: 107 IDNLEAAKMINDMAVAADTVVSYTIIVDSG--LHRFGLPVNKIVEFADKLKTMKGLKLRG 164
Query: 160 LMCIPPAMGNPKPHFYLLSEIARECK-LTKLSMGMTR-DFELA-IASGAT 206
+ P + + + + ECK L M +EL I SG+T
Sbjct: 165 ISTHPGHVYSATCENEVHKYVIDECKTLDTAKKYMNDAGYELEYITSGST 214
>gi|168185661|ref|ZP_02620296.1| alanine racemase [Clostridium botulinum C str. Eklund]
gi|169296525|gb|EDS78658.1| alanine racemase [Clostridium botulinum C str. Eklund]
Length = 387
Score = 39.6 bits (92), Expect = 0.30, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 19/139 (13%)
Query: 95 DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKY 153
D+ +TV A LS K + ++I V+TG + G +P ++ V
Sbjct: 99 DIEQTVFSLDYAKELSKAAEKMHKIAKIHIAVDTGM--GRIGFLPNEESIQDVKKISMLP 156
Query: 154 QLNVEGLMCIPPAMGNPKPH--------FYLLSEIARECKLTKLSMGMTR-----DFELA 200
+ ++G+ F E ++ + + ++ D
Sbjct: 157 NIKIKGIFSHFSTADEENKEYSSYQLNQFNKFYEGLKKENVNIETRHISNSAAIMDLPET 216
Query: 201 IASGATSVRIGSGIFGERP 219
G VR G ++G P
Sbjct: 217 KFEG---VRPGIILYGYYP 232
>gi|293602585|ref|ZP_06685029.1| diaminopimelate decarboxylase [Achromobacter piechaudii ATCC 43553]
gi|292819012|gb|EFF78049.1| diaminopimelate decarboxylase [Achromobacter piechaudii ATCC 43553]
Length = 429
Score = 39.6 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E LS + PV ++VN TG + K GI +
Sbjct: 137 VESEGELRRLSDVAQEMGMRAPVSLRVNPDVNAQTHPYISTGLKENKFGIAIESALGVYL 196
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
+ + + G+ C I + + P+F L ++
Sbjct: 197 TAQALPGVEIVGVDCHIGSQLTDISPYFDALEKLLD 232
>gi|217969261|ref|YP_002354495.1| diaminopimelate decarboxylase [Thauera sp. MZ1T]
gi|217506588|gb|ACK53599.1| diaminopimelate decarboxylase [Thauera sp. MZ1T]
Length = 423
Score = 39.6 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 26/104 (25%), Gaps = 16/104 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L + PV ++VN + K G+
Sbjct: 133 VESAAELEHLDAVAGELGVRAPVSLRVNPDVDPKTHPYISTGLKGNKFGVAFADAPAIYR 192
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKP---HFYLLSEIARECKLT 187
L++ G+ C I + + P L ++
Sbjct: 193 RAAALPNLHITGVACHIGSQLLDRAPIAEAAQKLRDLVEHLAAD 236
>gi|94310055|ref|YP_583265.1| Orn/DAP/Arg decarboxylase 2 [Cupriavidus metallidurans CH34]
gi|93353907|gb|ABF07996.1| diaminopimelate decarboxylase (DAP decarboxylase) [Cupriavidus
metallidurans CH34]
Length = 397
Score = 39.6 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 12/76 (15%)
Query: 96 VIETVSREKTASLLSLEMIKQSRFLPVYIQVN-----------TGYEIQKSGIMPNQTKD 144
+I V S L +Q R V ++ N G + GI D
Sbjct: 111 LIH-VESTLQLSRLDAVARRQGRCADVLLRANPAYGLPGATLQMGGGATQFGIDEALLPD 169
Query: 145 FVILCRQKYQLNVEGL 160
+ R + V GL
Sbjct: 170 VLAQSRTMPNVRVVGL 185
>gi|301155478|emb|CBW14944.1| diaminopimelate decarboxylase, PLP-binding [Haemophilus
parainfluenzae T3T1]
Length = 416
Score = 39.6 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 14/114 (12%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V ++ + + P+ ++VN + K G+ ++ ++
Sbjct: 124 VESVAELHHINQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVDEAREVYK 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ + L L +G
Sbjct: 184 LAATLPHVRITGMDCHIGSQLTELQPFLDATDRLIRLIEQLQEDGITLKHLDLG 237
>gi|317133108|ref|YP_004092422.1| alanine racemase [Ethanoligenens harbinense YUAN-3]
gi|315471087|gb|ADU27691.1| alanine racemase [Ethanoligenens harbinense YUAN-3]
Length = 364
Score = 39.6 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 43/219 (19%), Positives = 81/219 (36%), Gaps = 27/219 (12%)
Query: 17 SAILAKRPKDSVSLVAVSKMV-----DSKKIRVALS-CGQVIFAENKLQEAKKKWIPLRK 70
+ + A R +V ++ V K D + R+ +FA ++L+EAK+ L
Sbjct: 13 ANLEAMRKHTNVPVIPVLKGNAYGLGDVEVARLLREKADVHLFAVSRLEEAKRLKEALPD 72
Query: 71 EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY 130
E ++ + + K +E + + TV +A LL+ K V+++ +TG
Sbjct: 73 E---EIFLLSPYGTEKEAEEIVRLGLTATVGSYGSAVLLNGLSEKAGTRCRVHLKFDTG- 128
Query: 131 EIQKSGIMPNQTKDFVILCRQKYQLNVEGLM-----CIPPAMGNPKPHFYLLSEIARECK 185
+ +SG +P + + V + L + G + L K
Sbjct: 129 -LGRSGFLPEEAEKAVQAAKYLKNLEIAGCFSHFSNSFGKDEKGVRTQLDRLQHCVAALK 187
Query: 186 LTKLSMGMTRDFELAIASGATS--------VRIGSGIFG 216
+ GM +A ++ A VR GS + G
Sbjct: 188 NAGVEPGM---LHIAASNAAILYPSARLDAVRCGSALLG 223
>gi|313902556|ref|ZP_07835956.1| alanine racemase [Thermaerobacter subterraneus DSM 13965]
gi|313467122|gb|EFR62636.1| alanine racemase [Thermaerobacter subterraneus DSM 13965]
Length = 511
Score = 39.6 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 99 TVSREKTASLLSLEMIKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156
TV T LS + R L V+++V+ G + + G+ P Q V +
Sbjct: 147 TVHDAATLHALSQRAVALGVGRPLAVHLEVDMG--LGRGGLAPGQVAPLVAGAASLPGVR 204
Query: 157 VEGLMC 162
+EGL
Sbjct: 205 IEGLYT 210
>gi|186895776|ref|YP_001872888.1| alanine racemase [Yersinia pseudotuberculosis PB1/+]
gi|186698802|gb|ACC89431.1| alanine racemase [Yersinia pseudotuberculosis PB1/+]
Length = 409
Score = 39.6 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 54/142 (38%), Gaps = 15/142 (10%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQ 151
+DV E + + A L+ + L +++ +N+ + ++G+ ++ +
Sbjct: 136 YDVEELIGDKTVAEQLNNIAKLNGKVLRIHLALNSAG-MSRNGLEVSKARGLNDAKTIAG 194
Query: 152 KYQLNVEGLMCIPPAMG--NPKPHFYLLSEIARE------CKLTKLSMGMTRDFE-LAIA 202
L + G+M P K + A++ K K+ + + F LA+
Sbjct: 195 LKNLTIVGIMSHYPVEDASEIKADLARFQQQAKDVIAVTGLKREKIKLHVANTFATLAVP 254
Query: 203 SGA--TSVRIGSGIFGERPCQT 222
+ VR+G +G+ T
Sbjct: 255 D-SWLDMVRVGGVFYGDTIAST 275
>gi|327393933|dbj|BAK11355.1| hypothetical protein PAJ_1275 [Pantoea ananatis AJ13355]
Length = 388
Score = 39.6 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 21/130 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ--TKDFVILCRQKYQLNV 157
+ A +S ++ V+I+++ + GI P + Q + + V
Sbjct: 120 LDSMAQAQAISDYALQHQVTFSVFIEIDCDG--HRGGIRPEDETLAEIAGHLHQ-HGMVV 176
Query: 158 EGLMCIPPAMGNPKPHFYLLSEIARECKL---------------TKLSMGMTRDFELAIA 202
EG+M + + + +EC+ +S+G T A
Sbjct: 177 EGVMTHAGESYHCRTPQDIQRAAQQECQAVITAAQHIRAAGIPCPVVSVGSTPTAHAATD 236
Query: 203 S-GATSVRIG 211
G T VR G
Sbjct: 237 LTGVTEVRAG 246
>gi|323500161|ref|ZP_08105106.1| diaminopimelate decarboxylase [Vibrio sinaloensis DSM 21326]
gi|323314790|gb|EGA67856.1| diaminopimelate decarboxylase [Vibrio sinaloensis DSM 21326]
Length = 417
Score = 39.6 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++
Sbjct: 125 VESEPELERLNKVAGQLGVKAPISLRINPDVDANTHPYISTGLRDNKFGIAFDRAPAVYQ 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
L+++G L I P + L+ ++ A+ ++ L +G
Sbjct: 185 FASSLENLDIKGIDCHIGSQLTDIEPFIDATDRLLALIDDLKAQGIQIEHLDVG 238
>gi|222084502|ref|YP_002543031.1| amino acid processing protein [Agrobacterium radiobacter K84]
gi|221721950|gb|ACM25106.1| amino acid processing protein [Agrobacterium radiobacter K84]
Length = 367
Score = 39.6 bits (92), Expect = 0.32, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 8/113 (7%)
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPA--MG 168
+ L V ++ +TG + G+ P K L GLM P
Sbjct: 133 AWFATRKPLTVLVECDTGG--GRCGVQTPEAAATLARHIAGKPGLVFGGLMNYPKPNSAA 190
Query: 169 NPKPHFYLLSEIARECKLT--KLSMGMTRD-FELAIASGATSVRIGSGIFGER 218
+ + + + + +S G + F+ + AT R G+ I+ +R
Sbjct: 191 DTQTFLAETISLLKRNGIECPIVSNGGSPSLFDAHLVPAATEHRAGTYIYNDR 243
>gi|330892496|gb|EGH25157.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. mori str.
301020]
Length = 375
Score = 39.6 bits (92), Expect = 0.33, Method: Composition-based stats.
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------ 127
G L S+ S +++ + I + + L + R PV++++N
Sbjct: 99 GKLDSDLRSALLNKVEAIH-LESLNEIARLQHLAEETGRVQPVFLRINPQLPAAQSSKLA 157
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
GI + + L ++G
Sbjct: 158 MAGSATPFGIDETDLAEAIRRVDSASHLTLKGF 190
>gi|289644267|ref|ZP_06476354.1| Orn/DAP/Arg decarboxylase 2 [Frankia symbiont of Datisca glomerata]
gi|289505915|gb|EFD26927.1| Orn/DAP/Arg decarboxylase 2 [Frankia symbiont of Datisca glomerata]
Length = 562
Score = 39.6 bits (92), Expect = 0.33, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 11/72 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN-----------TGYEIQKSGIMPNQTKDFVIL 148
V L+ + R +PV ++VN G E GI D + +
Sbjct: 202 VESPGELRRLNHVAGRAGRQIPVTLRVNPSRVALAGSLRMGGEASAFGIPEADVPDVLAI 261
Query: 149 CRQKYQLNVEGL 160
R ++V G
Sbjct: 262 ARSLPWVDVAGF 273
>gi|213027179|ref|ZP_03341626.1| putative amino acid decarboxylase [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 365
Score = 39.6 bits (92), Expect = 0.33, Method: Composition-based stats.
Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 27/184 (14%)
Query: 33 VSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLRKEWDVQLR-----FIGSLQSNK 86
SK + A+ G EA ++ +RK ++ R F G ++
Sbjct: 29 ASKTCSVMGVLKAIRDAGICA-------EANSQY-EVRKCLEIGFRGDQIVFNGVVKKPA 80
Query: 87 -VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------TGYEI-----QK 134
+ ++ + V + K + V ++V T E+ K
Sbjct: 81 DLEYAIANDLYLINVDSLYELEHIDAISRKLKKVANVCVRVEPNVPSATHAELVTAFHAK 140
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM 193
SG+ Q ++ +++ GL M + + +P + E + + +G+
Sbjct: 141 SGLDLEQAEETCRRILAMPYVHLRGLHMHVGDQVPESEPFAKATKVLVDESRRLEEVLGI 200
Query: 194 TRDF 197
D
Sbjct: 201 KFDL 204
>gi|108807830|ref|YP_651746.1| alanine racemase [Yersinia pestis Antiqua]
gi|167401740|ref|ZP_02307231.1| alanine racemase [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|108779743|gb|ABG13801.1| putative alanine racemase [Yersinia pestis Antiqua]
gi|167048845|gb|EDR60253.1| alanine racemase [Yersinia pestis biovar Antiqua str. UG05-0454]
Length = 409
Score = 39.6 bits (92), Expect = 0.33, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 54/142 (38%), Gaps = 15/142 (10%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQ 151
+DV E + + A L+ + L +++ +N+ + ++G+ ++ +
Sbjct: 136 YDVEELIGDKTVAEQLNNIAKLNGKVLRIHLALNSAG-MSRNGLEVSKARGLNDAKTIAG 194
Query: 152 KYQLNVEGLMCIPPAMG--NPKPHFYLLSEIARE------CKLTKLSMGMTRDFE-LAIA 202
L + G+M P K + A++ K K+ + + F LA+
Sbjct: 195 LKNLTIVGIMSHYPVEDASEIKADLARFQQQAKDVIAVTGLKREKIKLHVANTFATLAVP 254
Query: 203 SGA--TSVRIGSGIFGERPCQT 222
+ VR+G +G+ T
Sbjct: 255 D-SWLDMVRVGGVFYGDTIAST 275
>gi|22125742|ref|NP_669165.1| alanine racemase [Yersinia pestis KIM 10]
gi|108812106|ref|YP_647873.1| alanine racemase [Yersinia pestis Nepal516]
gi|145599043|ref|YP_001163119.1| alanine racemase [Yersinia pestis Pestoides F]
gi|149366357|ref|ZP_01888391.1| putative alanine racemase [Yersinia pestis CA88-4125]
gi|153950742|ref|YP_001400629.1| alanine racemase [Yersinia pseudotuberculosis IP 31758]
gi|165925439|ref|ZP_02221271.1| alanine racemase [Yersinia pestis biovar Orientalis str. F1991016]
gi|165938444|ref|ZP_02227001.1| alanine racemase [Yersinia pestis biovar Orientalis str. IP275]
gi|166008560|ref|ZP_02229458.1| alanine racemase [Yersinia pestis biovar Antiqua str. E1979001]
gi|166210808|ref|ZP_02236843.1| alanine racemase [Yersinia pestis biovar Antiqua str. B42003004]
gi|167422631|ref|ZP_02314384.1| alanine racemase [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167426368|ref|ZP_02318121.1| alanine racemase [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|167468736|ref|ZP_02333440.1| alanine racemase [Yersinia pestis FV-1]
gi|218928815|ref|YP_002346690.1| alanine racemase [Yersinia pestis CO92]
gi|229841680|ref|ZP_04461838.1| putative alanine racemase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229843797|ref|ZP_04463940.1| putative alanine racemase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229894540|ref|ZP_04509722.1| putative alanine racemase [Yersinia pestis Pestoides A]
gi|229902427|ref|ZP_04517546.1| putative alanine racemase [Yersinia pestis Nepal516]
gi|270490394|ref|ZP_06207468.1| alanine racemase [Yersinia pestis KIM D27]
gi|294504124|ref|YP_003568186.1| alanine racemase [Yersinia pestis Z176003]
gi|21958663|gb|AAM85416.1|AE013788_2 putative alanine racemase [Yersinia pestis KIM 10]
gi|108775754|gb|ABG18273.1| alanine racemase [Yersinia pestis Nepal516]
gi|115347426|emb|CAL20330.1| putative alanine racemase [Yersinia pestis CO92]
gi|145210739|gb|ABP40146.1| alanine racemase [Yersinia pestis Pestoides F]
gi|149290731|gb|EDM40806.1| putative alanine racemase [Yersinia pestis CA88-4125]
gi|152962237|gb|ABS49698.1| alanine racemase [Yersinia pseudotuberculosis IP 31758]
gi|165913559|gb|EDR32179.1| alanine racemase [Yersinia pestis biovar Orientalis str. IP275]
gi|165922548|gb|EDR39699.1| alanine racemase [Yersinia pestis biovar Orientalis str. F1991016]
gi|165992942|gb|EDR45243.1| alanine racemase [Yersinia pestis biovar Antiqua str. E1979001]
gi|166207988|gb|EDR52468.1| alanine racemase [Yersinia pestis biovar Antiqua str. B42003004]
gi|166958478|gb|EDR55499.1| alanine racemase [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167054723|gb|EDR64527.1| alanine racemase [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|229680473|gb|EEO76570.1| putative alanine racemase [Yersinia pestis Nepal516]
gi|229689405|gb|EEO81468.1| putative alanine racemase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229694143|gb|EEO84191.1| putative alanine racemase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229703559|gb|EEO90576.1| putative alanine racemase [Yersinia pestis Pestoides A]
gi|262362240|gb|ACY58961.1| alanine racemase [Yersinia pestis D106004]
gi|262366174|gb|ACY62731.1| alanine racemase [Yersinia pestis D182038]
gi|270338898|gb|EFA49675.1| alanine racemase [Yersinia pestis KIM D27]
gi|294354583|gb|ADE64924.1| alanine racemase [Yersinia pestis Z176003]
gi|320014832|gb|ADV98403.1| putative alanine racemase [Yersinia pestis biovar Medievalis str.
Harbin 35]
Length = 409
Score = 39.6 bits (92), Expect = 0.33, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 54/142 (38%), Gaps = 15/142 (10%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQ 151
+DV E + + A L+ + L +++ +N+ + ++G+ ++ +
Sbjct: 136 YDVEELIGDKTVAEQLNNIAKLNGKVLRIHLALNSAG-MSRNGLEVSKARGLNDAKTIAG 194
Query: 152 KYQLNVEGLMCIPPAMG--NPKPHFYLLSEIARE------CKLTKLSMGMTRDFE-LAIA 202
L + G+M P K + A++ K K+ + + F LA+
Sbjct: 195 LKNLTIVGIMSHYPVEDASEIKADLARFQQQAKDVIAVTGLKREKIKLHVANTFATLAVP 254
Query: 203 SGA--TSVRIGSGIFGERPCQT 222
+ VR+G +G+ T
Sbjct: 255 D-SWLDMVRVGGVFYGDTIAST 275
>gi|20137378|sp|Q8ZFL4|ALR2_YERPE RecName: Full=Alanine racemase 2
Length = 394
Score = 39.6 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 54/142 (38%), Gaps = 15/142 (10%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQ 151
+DV E + + A L+ + L +++ +N+ + ++G+ ++ +
Sbjct: 121 YDVEELIGDKTVAEQLNNIAKLNGKVLRIHLALNSAG-MSRNGLEVSKARGLNDAKTIAG 179
Query: 152 KYQLNVEGLMCIPPAMG--NPKPHFYLLSEIARE------CKLTKLSMGMTRDFE-LAIA 202
L + G+M P K + A++ K K+ + + F LA+
Sbjct: 180 LKNLTIVGIMSHYPVEDASEIKADLARFQQQAKDVIAVTGLKREKIKLHVANTFATLAVP 239
Query: 203 SGA--TSVRIGSGIFGERPCQT 222
+ VR+G +G+ T
Sbjct: 240 D-SWLDMVRVGGVFYGDTIAST 260
>gi|51596715|ref|YP_070906.1| alanine racemase [Yersinia pseudotuberculosis IP 32953]
gi|51589997|emb|CAH21630.1| putative alanine racemase [Yersinia pseudotuberculosis IP 32953]
Length = 409
Score = 39.6 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 54/142 (38%), Gaps = 15/142 (10%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQ 151
+DV E + + A L+ + L +++ +N+ + ++G+ ++ +
Sbjct: 136 YDVEELIGDKTVAEQLNNIAKLNGKVLRIHLALNSAG-MSRNGLEVSKARGLNDAKTIAG 194
Query: 152 KYQLNVEGLMCIPPAMG--NPKPHFYLLSEIARE------CKLTKLSMGMTRDFE-LAIA 202
L + G+M P K + A++ K K+ + + F LA+
Sbjct: 195 LKNLTIVGIMSHYPVEDASEIKADLARFQQQAKDVIAVTGLKREKIKLHVANTFATLAVP 254
Query: 203 SGA--TSVRIGSGIFGERPCQT 222
+ VR+G +G+ T
Sbjct: 255 D-SWLDMVRVGGVFYGDTIAST 275
>gi|148550336|ref|YP_001270438.1| diaminopimelate decarboxylase [Pseudomonas putida F1]
gi|148514394|gb|ABQ81254.1| diaminopimelate decarboxylase [Pseudomonas putida F1]
Length = 415
Score = 39.6 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 13/94 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + + + PV ++VN + K GI + +
Sbjct: 124 VESTDELERLQVVAAEMGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEAIYV 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEI 180
Q L V G+ C I + +P L +
Sbjct: 184 RAAQLPNLEVVGVDCHIGSQLTTVEPFLDALDRL 217
>gi|313501204|gb|ADR62570.1| LysA_2 [Pseudomonas putida BIRD-1]
Length = 415
Score = 39.6 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 13/94 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + + + PV ++VN + K GI + +
Sbjct: 124 VESTDELERLQVVAAEMGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEAIYV 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEI 180
Q L V G+ C I + +P L +
Sbjct: 184 RAAQLPNLEVVGVDCHIGSQLTTVEPFLDALDRL 217
>gi|289663320|ref|ZP_06484901.1| diaminopimelate decarboxylase [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 429
Score = 39.6 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 24/116 (20%)
Query: 87 VSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQ 133
+++ +L D + V L+ R + V++++N G
Sbjct: 107 LAQAAALPDCTVH-VESLSELERLAAIAAHAGRCVSVFLRMNIAVPGAQSTRLMMGGHPS 165
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEG----LMCIPPAMGNPKPHFYLLSEIARECK 185
G+ P + L + L +EG LM + + L IA +
Sbjct: 166 PFGLDPCDLDTAMQLLQASPSLRLEGFHFHLMS------HQRDAAAQLHLIAAYLR 215
>gi|240947851|ref|ZP_04752291.1| Diaminopimelate decarboxylase [Actinobacillus minor NM305]
gi|240297813|gb|EER48249.1| Diaminopimelate decarboxylase [Actinobacillus minor NM305]
Length = 416
Score = 39.6 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V ++ + + P+ ++VN + K G+ Q ++
Sbjct: 124 VESISELHRINEVAGQLGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVQQAREVYR 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ + +L L +G
Sbjct: 184 LASHLPNVKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGIRLHHLDLG 237
>gi|167036274|ref|YP_001671505.1| diaminopimelate decarboxylase [Pseudomonas putida GB-1]
gi|166862762|gb|ABZ01170.1| diaminopimelate decarboxylase [Pseudomonas putida GB-1]
Length = 415
Score = 39.6 bits (92), Expect = 0.35, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 13/94 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + + + PV ++VN + K GI + +
Sbjct: 124 VESTDELERLQVVAAEMGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEAIYV 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEI 180
Q L V G+ C I + +P L +
Sbjct: 184 RAAQLPNLEVVGVDCHIGSQLTTVEPFLDALDRL 217
>gi|59713092|ref|YP_205868.1| diaminopimelate decarboxylase, PLP-binding [Vibrio fischeri ES114]
gi|59481193|gb|AAW86980.1| diaminopimelate decarboxylase, PLP-binding [Vibrio fischeri ES114]
Length = 417
Score = 39.2 bits (91), Expect = 0.35, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI + +
Sbjct: 125 VESEPELERLNAVAAEMGVIAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDHAPEVYK 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
+ L+V+G L I P + L+ ++ A+ + L +G
Sbjct: 185 FAQSLPNLDVQGIDCHIGSQLTDIEPFIDATDRLLALIDDLKAQGVNIRHLDVG 238
>gi|326424273|ref|NP_762625.2| putative amino acid racemase [Vibrio vulnificus CMCP6]
gi|319999659|gb|AAO07615.2| Predicted amino acid racemase [Vibrio vulnificus CMCP6]
Length = 360
Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats.
Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 18/144 (12%)
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
+ +++V D I + + LS + + V I V G + G+MP++ F
Sbjct: 86 QTAKVVEYCD-ISLNTEIQVIQQLSRVAKQVNSKHGVIIMVELG--DLREGVMPSRLIGF 142
Query: 146 VILCRQKYQLNVEG----LMCIPPAMGNPKPHFYLLSEIARECK------LTKLSMGMTR 195
+ + ++G L C + K LLS++A + L +S G +
Sbjct: 143 ISEIISLPNIIIKGIGANLTCRYGITPDDKK-MRLLSDLADGIEAVFGINLEIISGGNSS 201
Query: 196 DFELAIAS-GAT---SVRIGSGIF 215
+A G T ++R+G IF
Sbjct: 202 SINWVLAHQGRTRINNLRLGEAIF 225
>gi|317401723|gb|EFV82343.1| metal-activated pyridoxal enzyme [Achromobacter xylosoxidans C54]
Length = 379
Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats.
Identities = 14/105 (13%), Positives = 34/105 (32%), Gaps = 3/105 (2%)
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
K+ EA + + +G + ++++ + V + +S M
Sbjct: 82 KVSEAVPFVAAGITDIHISNEVVGPAKLRLLAQLARAAKLSVCVDNAANLARISQAMAAA 141
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGL 160
+ V ++V+ G + G+ + R + GL
Sbjct: 142 GAEIDVLVEVDVGQ--GRCGVSDDATVLALAQQARDLPGVTFVGL 184
>gi|26991903|ref|NP_747328.1| diaminopimelate decarboxylase [Pseudomonas putida KT2440]
gi|24987026|gb|AAN70792.1|AE016723_4 diaminopimelate decarboxylase [Pseudomonas putida KT2440]
Length = 415
Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 13/94 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + + + PV ++VN + K GI + +
Sbjct: 124 VESTDELERLQVVAAEMGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEAIYV 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEI 180
Q L V G+ C I + +P L +
Sbjct: 184 RAAQLPNLEVVGVDCHIGSQLTTVEPFLDALDRL 217
>gi|269118994|ref|YP_003307171.1| alanine racemase domain protein [Sebaldella termitidis ATCC 33386]
gi|268612872|gb|ACZ07240.1| alanine racemase domain protein [Sebaldella termitidis ATCC 33386]
Length = 387
Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 7/114 (6%)
Query: 64 KWIPLRKEWDVQLRFIGSL-Q--SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + + +++L G L Q S + +++ I TV + A +S E K
Sbjct: 87 KETEVLMKNNLKLGNTGHLVQIPSKMIGKVLKYGTEIMTVYSFEKACEISEEAEKLGIIQ 146
Query: 121 PVYI----QVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
+ + ++ Y Q++G+ +D + + GL P + N
Sbjct: 147 DIMFRILDEKSSIYPGQEAGVDLCDLEDITKKILTLKNVRINGLTSFPCFLYNE 200
>gi|167854915|ref|ZP_02477691.1| diaminopimelate decarboxylase [Haemophilus parasuis 29755]
gi|167853982|gb|EDS25220.1| diaminopimelate decarboxylase [Haemophilus parasuis 29755]
Length = 419
Score = 39.2 bits (91), Expect = 0.36, Method: Composition-based stats.
Identities = 13/114 (11%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V ++ + + P+ ++VN + K G+ + ++
Sbjct: 124 VESVSELKRINEVAGQLGKIAPISLRVNPDVDAKTHPYISTGLKENKFGVSVKEAREVYR 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
+ + G+ C + P + L+ ++ ++ +L L +G
Sbjct: 184 FATTLPHVKITGMDCHIGSQLTELQPFLDATDRVIVLMEQLKQDGIELHHLDLG 237
>gi|194337539|ref|YP_002019333.1| alanine racemase [Pelodictyon phaeoclathratiforme BU-1]
gi|194310016|gb|ACF44716.1| alanine racemase [Pelodictyon phaeoclathratiforme BU-1]
Length = 365
Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats.
Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 37/195 (18%)
Query: 49 GQVIFAENKLQEAKK-KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETV-----SR 102
G F + EA + K K+ L F L S+ + F + +
Sbjct: 52 GVRDFGVANIHEAIELKTGGALKKPANILAFSSPLPSH-----IPFF-LHHDIEMTLCDS 105
Query: 103 EKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC 162
S +++ + V ++V+TG + G P + + L ++G+
Sbjct: 106 LTLQSA-EEIAAAENKTIAVQLKVDTGM--GRLGTPPAVAMELLRQIDHSPHLELKGIYT 162
Query: 163 IPPAMGNPK------PHFYLLSEIARECKLTKLSMGMTRDFELAIASGA---------TS 207
+ F L+ + + A SGA
Sbjct: 163 HFADSSTAEGTTKQLDAFKTLTAEYEHASSKTV-------CKHAANSGAILSAPESWLDM 215
Query: 208 VRIGSGIFGERPCQT 222
VR G ++G P +
Sbjct: 216 VRPGILLYGYHPTKN 230
>gi|157960206|ref|YP_001500240.1| diaminopimelate decarboxylase [Shewanella pealeana ATCC 700345]
gi|157845206|gb|ABV85705.1| diaminopimelate decarboxylase [Shewanella pealeana ATCC 700345]
Length = 414
Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L+L ++ + PV +++N + K GI + +
Sbjct: 124 VESAAELEQLNLVALRLGKVAPVSLRINPDVDAGTHPYISTGLKENKFGIAMEEAEAIFA 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
+ L V+G+ C I P + L+ +A + ++ +G
Sbjct: 184 RANELPGLAVKGVDCHIGSQLTEIKPFLDAMDRMLALIDRLAEQGIEIKHFDVG 237
>gi|257456069|ref|ZP_05621272.1| alanine racemase [Treponema vincentii ATCC 35580]
gi|257446527|gb|EEV21567.1| alanine racemase [Treponema vincentii ATCC 35580]
Length = 375
Score = 39.2 bits (91), Expect = 0.37, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 103 EKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC 162
E+ + L+ Q + + V+++++TG + G P++ + L ++G+
Sbjct: 104 EEFINELNRAADAQKKTVAVHLKIDTGM--SRIGCKPSEAVKLATQIVRAKHLRLQGVAT 161
Query: 163 ---IPPAMGNPKPHF 174
+ + F
Sbjct: 162 HFAVADSDSESDRAF 176
>gi|167033190|ref|YP_001668421.1| alanine racemase [Pseudomonas putida GB-1]
gi|166859678|gb|ABY98085.1| alanine racemase [Pseudomonas putida GB-1]
Length = 409
Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 58/157 (36%), Gaps = 18/157 (11%)
Query: 78 FIGSLQSNKVSEIVSL-----FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
F G L +++ + L +D+ E V + A + + + L +++ +N+ +
Sbjct: 114 FTGQLVRVRLASLSELEDALQYDMEELVGSAEFARQVDAIAARHGKTLRIHMALNSSG-M 172
Query: 133 QKSGIMPNQT--KDFVILCRQKYQLNVEGLMC--IPPAMGNPKPHFYLLSE----IAREC 184
++G+ + + + L + LM + + +E + +
Sbjct: 173 SRNGVEMGSWSGRGEALQITDQKHLELVALMTHFAVEDKDDVRKGLAAFNEQTDWLIKHA 232
Query: 185 KLT--KLSMGMTRDF--ELAIASGATSVRIGSGIFGE 217
KL KL++ F + VR G +FG+
Sbjct: 233 KLDRSKLTLHAANSFATLEVPEARLDMVRTGGALFGD 269
>gi|150391836|ref|YP_001321885.1| alanine racemase [Alkaliphilus metalliredigens QYMF]
gi|149951698|gb|ABR50226.1| alanine racemase [Alkaliphilus metalliredigens QYMF]
Length = 391
Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 56/147 (38%), Gaps = 29/147 (19%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVI 147
+++ ++VI+T+ + A L+ +Q + + ++++++TG + G +Q T + +
Sbjct: 97 QVILDYNVIQTIYTYEQAKALAKIGKEQKKSMTIHLKIDTGM--SRLGFNCSQKTIEEIK 154
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKP-----HFYLLSEIARECKLTKLSMGMTRDFELAIA 202
+ +NVEG+ F E+ E K +++ I
Sbjct: 155 QIIELEYINVEGIYTHFAVADEKNKDYTKFQFNCFMELTEELK--------KEGYQIPIR 206
Query: 203 SGAT-------------SVRIGSGIFG 216
+ VR G ++G
Sbjct: 207 HVSNSAAIIDLPDMNLDMVRAGIMLYG 233
>gi|323135718|ref|ZP_08070801.1| diaminopimelate decarboxylase [Methylocystis sp. ATCC 49242]
gi|322398809|gb|EFY01328.1| diaminopimelate decarboxylase [Methylocystis sp. ATCC 49242]
Length = 421
Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 16/104 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E +S + + V ++VN TG K G+ + ++
Sbjct: 124 VESEPELEAISRVATRMGKVARVSLRVNPDVDARTHKKISTGKAENKFGVPLSHAREVYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIARECKLT 187
+ +++ G M I + + +P F LL+E+ + +
Sbjct: 184 RAAKFRGVDITGADMHIGSQLTDLEPFDEAFSLLAELVVDLRAD 227
>gi|288931191|ref|YP_003435251.1| diaminopimelate decarboxylase [Ferroglobus placidus DSM 10642]
gi|288893439|gb|ADC64976.1| diaminopimelate decarboxylase [Ferroglobus placidus DSM 10642]
Length = 419
Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 21/109 (19%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFV 146
+V +S + + + +VN + K GI Q +
Sbjct: 118 SVDSVDELYTISEIASEMGEEVEIAFRVNPDIDPKTHPKIATGLKKSKFGIPAEQVVETY 177
Query: 147 ILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARECKLT 187
L + + G+ C I P + F L+E E +
Sbjct: 178 RLALELPNVVPIGIHCHIGSQITEISPFVEAVNKIFD-LAERVEELGID 225
>gi|160899796|ref|YP_001565378.1| alanine racemase domain-containing protein [Delftia acidovorans
SPH-1]
gi|160365380|gb|ABX36993.1| alanine racemase domain protein [Delftia acidovorans SPH-1]
Length = 380
Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
+G + ++ + + V LS M + + V ++V+ G + G+
Sbjct: 105 VGPAKHALLARLARSARMAVCVDNAANLVQLSEAMSQAGVEIDVLVEVDVGQ--GRCGVT 162
Query: 139 -PNQTKDFVILCRQKYQLNVEGL 160
P +N GL
Sbjct: 163 GPEAVLALARQAHDLPGVNFAGL 185
>gi|38233177|ref|NP_938944.1| alanine racemase [Corynebacterium diphtheriae NCTC 13129]
gi|38199436|emb|CAE49080.1| Putative alanine racemase [Corynebacterium diphtheriae]
Length = 382
Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 43/132 (32%), Gaps = 18/132 (13%)
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161
L E +++ V + V E+ +SGI + L Q+NV G+
Sbjct: 102 SMDHVRALIAEAMRRPAGTRVRVTVKIDTELHRSGIDEANWTEAFELLHACPQVNVTGVF 161
Query: 162 C-IPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA-------------TS 207
+ A + +E+ R +S G +L + A
Sbjct: 162 SHLACADDLESDYTDHQAEVFRRA----ISAGRNVGLDLPVNHLAASPATLTRPDLHFDM 217
Query: 208 VRIGSGIFGERP 219
VR G ++G P
Sbjct: 218 VRPGLALYGHEP 229
>gi|86148171|ref|ZP_01066469.1| diaminopimelate decarboxylase [Vibrio sp. MED222]
gi|218710945|ref|YP_002418566.1| diaminopimelate decarboxylase [Vibrio splendidus LGP32]
gi|85834018|gb|EAQ52178.1| diaminopimelate decarboxylase [Vibrio sp. MED222]
gi|218323964|emb|CAV20326.1| Diaminopimelate decarboxylase [Vibrio splendidus LGP32]
Length = 417
Score = 39.2 bits (91), Expect = 0.38, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++
Sbjct: 125 VESEPELERLNKVAGELGVKAPISLRINPDVDANTHPYISTGLRDNKFGIAFDRAPAVYA 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
+ L++ G L I P + L+ ++ A + + L +G
Sbjct: 185 FAKTLDNLSIHGIDCHIGSQLTDIEPFIDATDRLLALIDQLRANDINIKHLDVG 238
>gi|189219090|ref|YP_001939731.1| diaminopimelate decarboxylase [Methylacidiphilum infernorum V4]
gi|189185948|gb|ACD83133.1| Diaminopimelate decarboxylase [Methylacidiphilum infernorum V4]
Length = 428
Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats.
Identities = 26/174 (14%), Positives = 45/174 (25%), Gaps = 60/174 (34%)
Query: 20 LAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFI 79
A + V K +I AL G F
Sbjct: 91 RAGADPQKCTFAGVGKTQ--SEIEEALQAGIYSF-------------------------- 122
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------ 127
V E+ + K+S PV ++N
Sbjct: 123 -------------------IVESEEELLEIDKIAAKRSTKAPVAFRLNPDVSALTHAKIT 163
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEI 180
TG ++ K GI + D C + ++ G+ M I + + P + ++
Sbjct: 164 TGTDLNKFGISLDLIDDVFEKCSRLENIHCRGVQMHIGSQIQSIDPFLEAIQKV 217
>gi|84393560|ref|ZP_00992314.1| diaminopimelate decarboxylase [Vibrio splendidus 12B01]
gi|84375839|gb|EAP92732.1| diaminopimelate decarboxylase [Vibrio splendidus 12B01]
Length = 417
Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++
Sbjct: 125 VESEPELERLNKVAGELGVKAPISLRINPDVDANTHPYISTGLRDNKFGIAFDRAPAVYA 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
+ L++ G L I P + L+ ++ A + + L +G
Sbjct: 185 FAKTLDNLSIHGIDCHIGSQLTDIEPFIDATDRLLALIDQLRANDINIKHLDVG 238
>gi|308174124|ref|YP_003920829.1| diaminopimelate decarboxylase [Bacillus amyloliquefaciens DSM 7]
gi|307606988|emb|CBI43359.1| diaminopimelate decarboxylase [Bacillus amyloliquefaciens DSM 7]
Length = 439
Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 52/178 (29%), Gaps = 57/178 (32%)
Query: 32 AVSKMVDSKKIRVALSCGQVIF-AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
AVS + +I F NK +E L+ D IG + +
Sbjct: 95 AVSAGFPADRI---------HFHGNNKSRE------ELQMALD---HQIGCI-------V 129
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ------------VNTGYEIQKSGIM 138
V F I SLL+ K R + V ++ + TG E K G
Sbjct: 130 VDNFHEI---------SLLAELCRKSGRAMDVLLRITPGVEAHTHDYITTGQEDSKFGFD 180
Query: 139 P--NQTKDFVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARECKL 186
Q + + Q + + G+ C + + F L+E
Sbjct: 181 LHNGQIEKAIEQVLQSDHIRLLGVHCHIGSQIFDTAGFVLAAEKIFAKLNEWRESFGF 238
>gi|160935372|ref|ZP_02082754.1| hypothetical protein CLOBOL_00267 [Clostridium bolteae ATCC
BAA-613]
gi|158441730|gb|EDP19430.1| hypothetical protein CLOBOL_00267 [Clostridium bolteae ATCC
BAA-613]
Length = 371
Score = 39.2 bits (91), Expect = 0.39, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ SLL+ Q + VN G ++GI N DF C + L+V+GL
Sbjct: 117 DDLEQVSLLNSAAGSQETIVNFLADVNMG--TNRTGISINTLPDFYRNCCKLPWLSVQGL 174
Query: 161 MCIPPAMGNPK 171
C G +
Sbjct: 175 HCYDGNNGIAE 185
>gi|229496686|ref|ZP_04390400.1| Mur ligase domain protein/alanine racemase [Porphyromonas
endodontalis ATCC 35406]
gi|229316583|gb|EEN82502.1| Mur ligase domain protein/alanine racemase [Porphyromonas
endodontalis ATCC 35406]
Length = 827
Score = 39.2 bits (91), Expect = 0.40, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 100 VSREKTASLLSLEMIKQS-RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
V K L+ ++ KQ + V+I+V+TG + G P++ + Q + L
Sbjct: 561 VFSWKLLRALANKIDKQGFDNIGVHIEVDTGM--HRLGFRPDEIPELARFFAQSHLLRAR 618
Query: 159 GLMC------IPPAMGNPKPHFYLLSEIARE 183
+ +P + + A +
Sbjct: 619 SIFTHLAAADMPEEDAFTRNQLEVFRTTADQ 649
>gi|328552744|gb|AEB23236.1| diaminopimelate decarboxylase [Bacillus amyloliquefaciens TA208]
gi|328912458|gb|AEB64054.1| diaminopimelate decarboxylase [Bacillus amyloliquefaciens LL3]
Length = 439
Score = 39.2 bits (91), Expect = 0.40, Method: Composition-based stats.
Identities = 33/178 (18%), Positives = 52/178 (29%), Gaps = 57/178 (32%)
Query: 32 AVSKMVDSKKIRVALSCGQVIF-AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
AVS + +I F NK +E L+ D IG + +
Sbjct: 95 AVSAGFPADRI---------HFHGNNKSRE------ELQMALD---HQIGCI-------V 129
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ------------VNTGYEIQKSGIM 138
V F I SLL+ K R + V ++ + TG E K G
Sbjct: 130 VDNFHEI---------SLLAELCRKSGRAMDVLLRITPGVEAHTHDYITTGQEDSKFGFD 180
Query: 139 P--NQTKDFVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARECKL 186
Q + + Q + + G+ C + + F L+E
Sbjct: 181 LHNGQIEKAIEQVLQSDHIRLLGVHCHIGSQIFDTAGFVLAAEKIFAKLNEWRESFGF 238
>gi|254823094|ref|ZP_05228095.1| alanine racemase [Mycobacterium intracellulare ATCC 13950]
Length = 391
Score = 39.2 bits (91), Expect = 0.40, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 19/137 (13%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR---QKYQL 155
VS E+ L + + R V ++V+TG + ++G+ P + R + +
Sbjct: 112 AVSSERQLDELLDAVRRTGRTATVTVKVDTG--LNRNGVPPEHYPSMLTALRRAVAENAI 169
Query: 156 NVEGLMC-IPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT-------- 206
+ GLM + A P L ++ E + + +E A S ++
Sbjct: 170 VLRGLMSHMVYADQPANPVNDLQAQRFTE--MLAQARDQGVRYEAAHLSNSSATMSRPDL 227
Query: 207 ---SVRIGSGIFGERPC 220
VR G ++G P
Sbjct: 228 AFDMVRPGIAVYGLSPV 244
>gi|33151309|ref|NP_872662.1| diaminopimelate decarboxylase [Haemophilus ducreyi 35000HP]
gi|33147529|gb|AAP95051.1| diaminopimelate decarboxylase [Haemophilus ducreyi 35000HP]
Length = 417
Score = 39.2 bits (91), Expect = 0.40, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V ++ + + + ++VN + K GI Q +
Sbjct: 124 VESVAELHRINQIAGELGKIATISLRVNPDVDAGTHPYISTGLKENKFGISVQQARAVYQ 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + V GL C + P + LL ++ R+ +L+ L +G
Sbjct: 184 LASRLPHIQVVGLDCHIGSQLTELQPFLDAADRLIVLLEQLYRDGIRLSHLDLG 237
>gi|15639668|ref|NP_219118.1| alanine racemase (alr) [Treponema pallidum subsp. pallidum str.
Nichols]
gi|3322978|gb|AAC65644.1| alanine racemase (alr) [Treponema pallidum subsp. pallidum str.
Nichols]
Length = 357
Score = 39.2 bits (91), Expect = 0.40, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 9/146 (6%)
Query: 40 KKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIE 98
+ ALSCG FA +QEA + + + L + EI SL +
Sbjct: 23 DVAQAALSCGVHSFAVACVQEASQLRAAGVRAPILC------LSTPTAEEISSLIEHRVH 76
Query: 99 TVSREKTASLLSLEMIKQSRFLP--VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156
TV E+ L ++QS + V + + G P++ V + L+
Sbjct: 77 TVISERAHIALIARALRQSADTGATCGVHVKIDTGMGRIGCAPDEACALVQMVCATPGLH 136
Query: 157 VEGLMCIPPAMGNPKPHFYLLSEIAR 182
+EG+ + + +E+ R
Sbjct: 137 LEGVCTHFSVADSVRAEDLQYTEMQR 162
>gi|238022778|ref|ZP_04603204.1| hypothetical protein GCWU000324_02689 [Kingella oralis ATCC 51147]
gi|237865981|gb|EEP67117.1| hypothetical protein GCWU000324_02689 [Kingella oralis ATCC 51147]
Length = 410
Score = 39.2 bits (91), Expect = 0.41, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 11/114 (9%)
Query: 115 KQSRFLPVYIQVNTGYEIQKS-GIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG--NPK 171
K+ + L +++ +N G + + K + + LN+ G+M P + K
Sbjct: 158 KRGKKLNIHLALNAGGMDRNGLALDTESGKADALAIAKLPHLNIVGIMTHFPVEDVADVK 217
Query: 172 PHFYLLSE----IARECKLT--KLSMGMTRDF-ELAIASGA-TSVRIGSGIFGE 217
E + + KL KL++ F +++ G VR G+ ++GE
Sbjct: 218 KGVQRFDEQSKWLIQAAKLDRSKLTLHTANSFTTVSVPEGRFDMVRPGALLYGE 271
>gi|311693138|gb|ADP96011.1| diaminopimelate decarboxylase [marine bacterium HP15]
Length = 416
Score = 39.2 bits (91), Expect = 0.41, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + L+ + P+ ++VN + K GI +
Sbjct: 124 VESDTELDRLNAVAGELGVKAPISLRVNPDVDAGTHPYISTGLKENKFGIDIAEASQVYA 183
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L+V+G L + P + L+ +A + + L MG
Sbjct: 184 RAAGMPNLDVKGVDCHIGSQLTSVSPFLDALDRVLALIDSLADQGIHIHHLDMG 237
>gi|309779212|ref|ZP_07673975.1| alanine racemase, N- domain protein [Ralstonia sp. 5_7_47FAA]
gi|308922016|gb|EFP67650.1| alanine racemase, N- domain protein [Ralstonia sp. 5_7_47FAA]
Length = 382
Score = 39.2 bits (91), Expect = 0.42, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 47/135 (34%), Gaps = 23/135 (17%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ--LNV 157
V + A + V+I+V+T +SGI P Q + + R ++V
Sbjct: 112 VDNAEAAHAVVDYARAHGERCEVWIEVDTDG--HRSGITPEQ-DALLEVGRILKNGGIDV 168
Query: 158 EGLMCIPPA-------------MGNPKPHFYLLSEIARECKLT--KLSMGMTRDFELAIA 202
G+M + + ++ RE + +S+G T LA
Sbjct: 169 SGVMTHAGSSYDLNDRAALAALAEQERAGCVRAAQRLREAGVPCAAVSVGSTPT-ALATE 227
Query: 203 S--GATSVRIGSGIF 215
G T VR G +F
Sbjct: 228 HLEGVTEVRAGVYVF 242
>gi|197336405|ref|YP_002157271.1| diaminopimelate decarboxylase [Vibrio fischeri MJ11]
gi|197317895|gb|ACH67342.1| diaminopimelate decarboxylase [Vibrio fischeri MJ11]
Length = 417
Score = 39.2 bits (91), Expect = 0.42, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++ +
Sbjct: 125 VESEPELERLNAVAAEMGVIAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPEVYK 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
+ L+V+G L I P + L+ ++ A+ + L +G
Sbjct: 185 FAQSLPNLDVQGIDCHIGSQLTDIEPFIDATDRLLALIDDLKAQGVNIRHLDVG 238
>gi|168237385|ref|ZP_02662443.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194735492|ref|YP_002115431.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|194710994|gb|ACF90215.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197289617|gb|EDY28980.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
Length = 465
Score = 39.2 bits (91), Expect = 0.42, Method: Composition-based stats.
Identities = 27/184 (14%), Positives = 60/184 (32%), Gaps = 27/184 (14%)
Query: 33 VSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLRKEWDVQLR-----FIGSLQSNK 86
SK + A+ G EA ++ +RK ++ R F G ++
Sbjct: 78 ASKTCSVMGVLKAIRDAGICA-------EANSQY-EVRKCLEIGFRGDQIVFNGVVKKPA 129
Query: 87 -VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------TGYEI-----QK 134
+ ++ + V + + + V ++V T E+ K
Sbjct: 130 DLEYAIANDLYLINVDSLYELEHIDAISRRLKKVANVCVRVEPNVPSATHAELVTAFHAK 189
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM 193
SG+ Q ++ +++ GL M + + +P + E + + +G+
Sbjct: 190 SGLDLEQAEETCRRILAMPYVHLRGLHMHVGDQVPESEPFAKATKVLVDESRRLEEVLGI 249
Query: 194 TRDF 197
D
Sbjct: 250 KFDL 253
>gi|16331712|ref|NP_442440.1| alanine racemase [Synechocystis sp. PCC 6803]
gi|1001266|dbj|BAA10510.1| alanine racemase [Synechocystis sp. PCC 6803]
Length = 400
Score = 39.2 bits (91), Expect = 0.42, Method: Composition-based stats.
Identities = 45/253 (17%), Positives = 87/253 (34%), Gaps = 55/253 (21%)
Query: 6 KLQV-FKQK----IENSAILAKRPKDSVS-----------LVAVSK----MVDSKKIRV- 44
+L +Q+ I+ +A+ +V L+AV K + ++
Sbjct: 25 RLAELIRQRAWVEIDQAAL-----VHNVRQFRQYVGPKTNLMAVVKADAYGHGAVRVAQT 79
Query: 45 ALSCG-----QVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIET 99
AL G E + +G + S + E ++ + + T
Sbjct: 80 ALQAGADWLAIATLGEG--------IELREAGITAPILLLGGINSPEEIEAIAHWRLQPT 131
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ + A L + ++K + LPV+++++TG + G Q +FV L + QL +
Sbjct: 132 LCSPEQAQLFNDILLKLGKVLPVHLKLDTGM--TRLGTPWPQAANFVGLVQSLPQLRLAS 189
Query: 160 LMCIPPAMGNPK--------PHFYLLSEIARECKLTKLSMGMTRDFELAIASGA----TS 207
L +P F R+ +L + + A G
Sbjct: 190 LYSHLATADDPNTATMLQQQERFAKAIASLRQARLPIPKLHLAN--SAATLHGQAWHYDM 247
Query: 208 VRIGSGIFGERPC 220
VR+G G++G P
Sbjct: 248 VRVGLGLYGLYPA 260
>gi|300309533|ref|YP_003773625.1| diaminopimelate decarboxylase [Herbaspirillum seropedicae SmR1]
gi|300072318|gb|ADJ61717.1| diaminopimelate decarboxylase protein [Herbaspirillum seropedicae
SmR1]
Length = 430
Score = 39.2 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 25/136 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V + L+ + + ++VN TG + K G+ +
Sbjct: 132 VESIPEVARLNEVAGALGKRARISLRVNPNVDAKTHPYISTGLKENKFGVAYEDALNCYR 191
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIARECKLTKLS------------MGMT 194
+ V G+ C I + + P L +I + +G+
Sbjct: 192 AAAALPHIEVVGIDCHIGSQLLDDSPLLEALDKIIDMVDALEAEGIPIHHLDIGGGIGIR 251
Query: 195 RDFELAIASGATSVRI 210
D E +A G R+
Sbjct: 252 YDDEQPVAIGDYLARV 267
>gi|289674139|ref|ZP_06495029.1| Orn/DAP/Arg decarboxylase 2:Orn/DAP/Arg decarboxylase 2
[Pseudomonas syringae pv. syringae FF5]
Length = 243
Score = 39.2 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 13/93 (13%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------ 127
G L S+ S ++ + I + + L + R PV++++N
Sbjct: 99 GKLDSDLRSALLHKVEAIH-LESLNEIARLQQLAEQAGRVQPVFLRINPQLPAAQSSRLA 157
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
GI + V L ++G
Sbjct: 158 MAGTATPFGIDEADLAEAVRRVDNASHLTLKGF 190
>gi|256831867|ref|YP_003160594.1| alanine racemase [Jonesia denitrificans DSM 20603]
gi|256685398|gb|ACV08291.1| alanine racemase [Jonesia denitrificans DSM 20603]
Length = 410
Score = 39.2 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 30/180 (16%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSK-------MVDSKKIRVALSCGQVIFAENKLQ 59
L Q + A +++AV K +V + R AL G
Sbjct: 20 LAAISQNVSTLATRLGDNGSHAAIMAVVKANAYGHGLVPAA--RAALHGGATWLGVAHAH 77
Query: 60 EAKKKWIPLRKEWDVQL-RFIGSLQSNKVSEIVSLFDVIE-----TVSREKTASLLSLEM 113
EA + + G V D+I +V+ A +
Sbjct: 78 EALALRQAGITDRILTWLHAPG----------VPYRDLIAADIDVSVAAPWAAQEVISAA 127
Query: 114 IKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC---RQKYQLNVEGLMCIPPAMGNP 170
R V+++V+TG + ++G+ P + + L + G+ P
Sbjct: 128 QAAGRPARVHLKVDTG--LGRNGVTPADLPFLLATLIDAQHAGHLTLVGVWSHLAFADEP 185
>gi|168179710|ref|ZP_02614374.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
NCTC 2916]
gi|182669204|gb|EDT81180.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
NCTC 2916]
Length = 353
Score = 39.2 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 11/160 (6%)
Query: 24 PKDSVSLVAVSKMV-DSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLR-KEWDVQLRFIG 80
K + +VAV+K + KI A+ I A++++ E KK + + + ++L I
Sbjct: 25 KKRGIKVVAVTKTFCGNPKIAKAIAEEKVDILADSRI-ENLKKLVHINLPKMLLRLPMI- 82
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
++V E+V D I VS T LS E IKQ++ + + ++ G ++++
Sbjct: 83 ----SQVEEVVKYTD-ISLVSDIITIRELSREAIKQNKIHSIILMIDLG-DLREGIFNEE 136
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ V + + G+ G P + LS++
Sbjct: 137 EIYITVKEILNFKNVKLMGIGTNLSCYGGVIPTYENLSQL 176
>gi|295110109|emb|CBL24062.1| alanine racemase [Ruminococcus obeum A2-162]
Length = 388
Score = 39.2 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 32/196 (16%), Positives = 72/196 (36%), Gaps = 31/196 (15%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVALSCGQVIFAENK 57
++ + + K+ I + +VAV K ++ I + + I+
Sbjct: 15 AIAHNFEEMKKNIA----------EGTKIVAVIKADGYGHGAEAIARLIEDYEYIWG--Y 62
Query: 58 LQEAKKKWIPLRKEW-DVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
++ + LR D + +G + E+++ + TV + A+ LS E ++Q
Sbjct: 63 ATATPEEALQLRDAGIDKPILILGIVFEEYYKELIAHEVRM-TVCEYEMAAALSEEAVRQ 121
Query: 117 SRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
R V+I + + + G ++ + + + +EG+ HF
Sbjct: 122 GR--QVHIHIGLDTGMSRIGFADVPESVETIKKIAALPNVEIEGMFT----------HFA 169
Query: 176 LLSEIARECKLTKLSM 191
E R +T+L+
Sbjct: 170 RADETDRSPAITQLNR 185
>gi|219871605|ref|YP_002475980.1| diaminopimelate decarboxylase [Haemophilus parasuis SH0165]
gi|219691809|gb|ACL33032.1| diaminopimelate decarboxylase [Haemophilus parasuis SH0165]
Length = 419
Score = 39.2 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 13/114 (11%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V ++ + + P+ ++VN + K G+ + ++
Sbjct: 124 VESVSELKRINEVAGQLGKIAPISLRVNPDVDAKTHPYISTGLKENKFGVSVKEAREVYR 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
+ + G+ C + P + L+ ++ ++ +L L +G
Sbjct: 184 FATTLPHVKITGMDCHIGSQLTELQPFLDATDRVIVLMEQLKQDGIELHHLDLG 237
>gi|325281902|ref|YP_004254444.1| Alanine racemase [Odoribacter splanchnicus DSM 20712]
gi|324313711|gb|ADY34264.1| Alanine racemase [Odoribacter splanchnicus DSM 20712]
Length = 825
Score = 39.2 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 102 REKTASLLSLEMIKQS-RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ + K PV++++NTG +SG+ P + K ++ + +
Sbjct: 564 SLELLEAFDRVLTKHGIEKYPVHLKLNTGM--NRSGLDPEDLPALLKFFETKRKVIIRSM 621
Query: 161 MCIPPAMGNPKPHFYLLSEIARECKLTK 188
+ Y L +I R ++TK
Sbjct: 622 FSHLAGSDEARHDEYTLFQINRFIEMTK 649
>gi|220923057|ref|YP_002498359.1| alanine racemase domain-containing protein [Methylobacterium
nodulans ORS 2060]
gi|219947664|gb|ACL58056.1| alanine racemase domain protein [Methylobacterium nodulans ORS
2060]
Length = 393
Score = 39.2 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY--QLNV 157
+ + A ++ S LPV I+V+ +SG+ P + + R +++
Sbjct: 123 LDSLEQAEAVADHSSSSSDPLPVLIEVDADG--HRSGVAPGDADTLLAIGRLLLAGGVSL 180
Query: 158 EGL 160
G+
Sbjct: 181 RGV 183
>gi|115472931|ref|NP_001060064.1| Os07g0573100 [Oryza sativa Japonica Group]
gi|34393551|dbj|BAC83149.1| putative adenosine-5'-phosphosulfate kinase [Oryza sativa Japonica
Group]
gi|113611600|dbj|BAF21978.1| Os07g0573100 [Oryza sativa Japonica Group]
gi|222637317|gb|EEE67449.1| hypothetical protein OsJ_24824 [Oryza sativa Japonica Group]
Length = 345
Score = 39.2 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 53/172 (30%), Gaps = 20/172 (11%)
Query: 46 LSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR--FIGSLQSNKVSEIVSLFDVIETVS-- 101
G + ENK+ + + K ++ +G K+ + I +S
Sbjct: 123 AHAGVSLVGENKV---LQMSSIVPKASNIFWHDCAVGQADRQKLLKQKGCVVWITGLSGS 179
Query: 102 -REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKS-GIMPNQTKDFVILCRQKYQLNV-E 158
+ A L E+ + + V N + + K G + + + +L
Sbjct: 180 GKSTLACTLDRELHTRGKLSYVLDGDNLRHGLNKDLGFKAEDRAENIRRVGEVAKLFADA 239
Query: 159 GLMCIPPAMGNPKPHFYLLSEIARECKLTKL----------SMGMTRDFELA 200
GL+CI + + + + ++ S ++LA
Sbjct: 240 GLVCIASFISPYRRDRESCRALLSDGSFIEVFLNMPLELCESRDPKGLYKLA 291
>gi|30249388|ref|NP_841458.1| alanine racemase [Nitrosomonas europaea ATCC 19718]
gi|81838719|sp|Q82UR4|ALR_NITEU RecName: Full=Alanine racemase
gi|30138751|emb|CAD85328.1| Alanine racemase [Nitrosomonas europaea ATCC 19718]
Length = 362
Score = 39.2 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 40/234 (17%), Positives = 85/234 (36%), Gaps = 40/234 (17%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L + L V ++ + + ++AV K A G + A + +A
Sbjct: 13 ALRHNLAVVRRHVHQA-----------RIMAVVK-------ADAYGHGLLRVA--RALDA 52
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV--IETVSREKTASLLSLE------- 112
+ L E +QLR G Q + + F + IE ++ + ++++
Sbjct: 53 VDGFAVLELEAAIQLREAGFSQL--ILLLEGFFSIEEIEAINHYRLSTVIHCHEQLSMLL 110
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
K++ +++++NTG + + G P + + RQ + LM +
Sbjct: 111 AHKKTGKPDIFLKINTG--MNRLGFRPEEGNSVLNRLRQWHTDISITLMTHFACADDLLE 168
Query: 173 HFYLLSEIARECKLTKLSMGMTRDFE---LAI----ASGATSVRIGSGIFGERP 219
++ ++ +L + G AI + A VR G ++G P
Sbjct: 169 ADHVDQQLGSFARLEEKREGCIPRTLANSAAILRYPGTHADWVRPGIILYGASP 222
>gi|296119282|ref|ZP_06837850.1| alanine racemase [Corynebacterium ammoniagenes DSM 20306]
gi|295967674|gb|EFG80931.1| alanine racemase [Corynebacterium ammoniagenes DSM 20306]
Length = 366
Score = 39.2 bits (91), Expect = 0.44, Method: Composition-based stats.
Identities = 39/208 (18%), Positives = 58/208 (27%), Gaps = 39/208 (18%)
Query: 1 MSLGN---KLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVI 52
MSL + L + L V L+ V K +K+ L G +
Sbjct: 1 MSLLSTRINLDAISHNVHKLKELVG---PDVRLMCVVKADAYGHGVEKVAPVMLKAGADV 57
Query: 53 FAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIET-----VSREKTAS 107
+ EA V Q L D + + V + A
Sbjct: 58 LGCATVDEAVALRSMGIDAPLVAW-MWEPEQ--------DLSDALSSNIVIGVPSLQHAQ 108
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---- 163
+L + + V I+V TG ++G+ Q + L + V GLM
Sbjct: 109 VL----VDIEVPVKVAIKVETGM--HRNGVDRAQWAEVFALLNDAPHIEVTGLMSHLACA 162
Query: 164 ----PPAMGNPKPHFYLLSEIARECKLT 187
P F ARE L
Sbjct: 163 DEPDNPHTDVQAEEFRAAIAQAREAGLE 190
>gi|52550218|gb|AAU84067.1| diaminopimelate decarboxylase [uncultured archaeon GZfos36D8]
Length = 425
Score = 39.2 bits (91), Expect = 0.44, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 12/76 (15%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFV 146
+V LS + R + + I+VN TG + K GI +
Sbjct: 121 SVDSVDELRALSAVANELGREVEIAIRVNPDVSPDVHAKIATGLKESKFGIPFHDVIPVC 180
Query: 147 ILCRQKYQLNVEGLMC 162
+ + + GL C
Sbjct: 181 EEAEKLPNVLLAGLHC 196
>gi|52548561|gb|AAU82410.1| diaminopimelate decarboxylase [uncultured archaeon GZfos17C7]
Length = 425
Score = 39.2 bits (91), Expect = 0.44, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 12/76 (15%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFV 146
+V LS + R + + I+VN TG + K GI +
Sbjct: 121 SVDSVDELRALSAVANELGREVEIAIRVNPDVSPDVHAKIATGLKESKFGIPFHDVIPVC 180
Query: 147 ILCRQKYQLNVEGLMC 162
+ + + GL C
Sbjct: 181 EEAEKLPNVLLAGLHC 196
>gi|52549770|gb|AAU83619.1| diaminopimelate decarboxylase [uncultured archaeon GZfos32E4]
Length = 425
Score = 39.2 bits (91), Expect = 0.44, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 12/76 (15%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFV 146
+V LS + R + + I+VN TG + K GI +
Sbjct: 121 SVDSVDELRALSAVANELGREVEIAIRVNPDVSPDVHAKIATGLKESKFGIPFHDVIPVC 180
Query: 147 ILCRQKYQLNVEGLMC 162
+ + + GL C
Sbjct: 181 EEAEKLPNVLLAGLHC 196
>gi|297528776|ref|YP_003670051.1| Orn/DAP/Arg decarboxylase 2 [Geobacillus sp. C56-T3]
gi|297252028|gb|ADI25474.1| Orn/DAP/Arg decarboxylase 2 [Geobacillus sp. C56-T3]
Length = 401
Score = 39.2 bits (91), Expect = 0.44, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 50/164 (30%), Gaps = 24/164 (14%)
Query: 13 KIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIF-----AENKLQEAKKKWIP 67
++ +++ A P SV L K ++I ++ F E +K
Sbjct: 33 RVHTASLSASLPP-SVRLFYAVKANADERILKTVAPYVTGFEVASGGE------LQKVRR 85
Query: 68 LRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
L + V G + I +I V L+ ++ + V ++VN
Sbjct: 86 LFADSPVIFGGPGKTDEELTAAIEERVALIH-VESVWELQRLNWIAARRQTTVRVLLRVN 144
Query: 128 T-----------GYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ + GI + + ++++G
Sbjct: 145 LRQAASGATLHMAGKPTQFGIDEQHIAEAIHTALTLPSIDLQGF 188
>gi|330837455|ref|YP_004412096.1| alanine racemase domain-containing protein [Spirochaeta coccoides
DSM 17374]
gi|329749358|gb|AEC02714.1| alanine racemase domain protein [Spirochaeta coccoides DSM 17374]
Length = 387
Score = 39.2 bits (91), Expect = 0.44, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 79 IGSL-QSNKVS--EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE---- 131
+G L Q+ K + +I+S I T+ + A + V ++V +
Sbjct: 102 VGHLVQTPKATLPKILSARPEIMTIYSLEKAQEIEHICSHLHMEQQVMLRVMDNGDICLP 161
Query: 132 IQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
Q G + V R+ +++ G+ P + + K
Sbjct: 162 GQTGGFSLASLPEVVSSLRKLPHVHIAGVTAFPCFLYDEKR 202
>gi|289667147|ref|ZP_06488222.1| diaminopimelate decarboxylase [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 429
Score = 39.2 bits (91), Expect = 0.44, Method: Composition-based stats.
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 23/105 (21%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQKSGIMPNQTKD 144
+ V L+ R + V++++N G G+ P
Sbjct: 118 VH-VESLSELERLAAIAAHAGRCVSVFLRMNIAVPGAQSTRLMMGGHPSPFGLDPCDLDT 176
Query: 145 FVILCRQKYQLNVEG----LMCIPPAMGNPKPHFYLLSEIARECK 185
+ L + L +EG LM + + L IA +
Sbjct: 177 AMQLLQASPSLRLEGFHFHLMS------HQRDAAAQLHLIAAYLR 215
>gi|226939228|ref|YP_002794299.1| hypothetical protein LHK_00295 [Laribacter hongkongensis HLHK9]
gi|226714152|gb|ACO73290.1| alanine racemase domain-containing protein [Laribacter
hongkongensis HLHK9]
Length = 356
Score = 39.2 bits (91), Expect = 0.45, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 11/106 (10%)
Query: 89 EIVSLFDVIETVSREKT-ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI 147
++V D+ +++ E LS + R V + ++ ++++ + T
Sbjct: 89 DVVRYADL--SLNSEPHTVRALSAAAVALGRTHGVIV-MHDLGDLREGCFSADDTVALAR 145
Query: 148 LCRQKYQLNVEGLMC-------IPPAMGNPKPHFYLLSEIARECKL 186
L + L +EGL + P N + L I RE +
Sbjct: 146 LVTELPGLELEGLGTNLACYGGVEPTTENQQQLVDLARRIERELGV 191
>gi|113869390|ref|YP_727879.1| diaminopimelate decarboxylase [Ralstonia eutropha H16]
gi|113528166|emb|CAJ94511.1| diaminopimelate decarboxylase [Ralstonia eutropha H16]
Length = 419
Score = 39.2 bits (91), Expect = 0.45, Method: Composition-based stats.
Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 13/102 (12%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L+ + + V +++N + K GI
Sbjct: 125 VESIPELDRLNEVAGRVGKRARVSLRINPDVDAKTHPYISTGLKGNKFGIAFEDVLPTYR 184
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIARECKLTK 188
L V G+ C I + +P+ L ++ + +
Sbjct: 185 AAAALPHLEVTGIDCHIGSQITEVEPYLEALDKVLDVVEALE 226
>gi|313892618|ref|ZP_07826205.1| alanine racemase [Dialister microaerophilus UPII 345-E]
gi|313119015|gb|EFR42220.1| alanine racemase [Dialister microaerophilus UPII 345-E]
Length = 365
Score = 39.2 bits (91), Expect = 0.45, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 4/94 (4%)
Query: 95 DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ 154
D+I + + ++ + V + V+TG + GI ++ +F+ ++
Sbjct: 96 DMIMPIDDTVDLKTMEAVAAVSNKEVKVMLTVDTGM--NRLGIHLDKIPEFLKKLKRYPH 153
Query: 155 LNVEGLMCIPPAMGNPKPHF--YLLSEIARECKL 186
L + G F L E + +L
Sbjct: 154 LKLHGTFTHMATADEKDKTFAIAQLKEFEKALEL 187
>gi|83816434|ref|YP_444716.1| alanine racemase [Salinibacter ruber DSM 13855]
gi|83757828|gb|ABC45941.1| alanine racemase [Salinibacter ruber DSM 13855]
Length = 450
Score = 38.9 bits (90), Expect = 0.46, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 7/136 (5%)
Query: 43 RVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSR 102
+ A G + +L E + L Q + +E +D+ TVS
Sbjct: 102 QAAYEAGIRHYGVARLPEGVHLREAGHGGRILVLGAPAPTQLPRYAE----YDLDLTVSS 157
Query: 103 EKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC 162
A+ + ++ L V++ V+TG + G+ P+ + + + GL
Sbjct: 158 ADVAAAVVRHASPEA-PLRVHVTVDTGM--GRLGLAPDDVPAVMTRLADASGVRLAGLWT 214
Query: 163 IPPAMGNPKPHFYLLS 178
P F
Sbjct: 215 HFATADAPGSSFAQTQ 230
>gi|306846133|ref|ZP_07478695.1| alanine racemase [Brucella sp. BO1]
gi|306273384|gb|EFM55245.1| alanine racemase [Brucella sp. BO1]
Length = 399
Score = 38.9 bits (90), Expect = 0.46, Method: Composition-based stats.
Identities = 33/240 (13%), Positives = 70/240 (29%), Gaps = 50/240 (20%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + +I + AV K + + ++ A G F
Sbjct: 27 ALRHNYSAIATRIAPTRTA-----------AVVKADAYGLGASRVAPAFYEAGCRDFFVA 75
Query: 54 --AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
E + + D L + LQ + ++ ++ + +
Sbjct: 76 HLGE-------AVALKPFLKPDATLYVLNGLQPGTEAACARE-GILPVLNSLEQVENWAA 127
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI-------- 163
+ + LP +Q +TG + G+ + + +++++ I
Sbjct: 128 LATRLGKKLPALLQFDTGM--SRLGLSAKEFDRLLENVALLSRIDIK--FAISHLANGDE 183
Query: 164 PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT----SVRIGSGIFGERP 219
P N + + + +AR KL F G T R G ++G P
Sbjct: 184 PGNAANARQLAKMTALLARLPKLPAALANSGGTFL-----GKTYYFDLARPGIALYGIDP 238
>gi|330869029|gb|EGH03738.1| alanine racemase domain-containing protein [Pseudomonas syringae
pv. aesculi str. 0893_23]
Length = 378
Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 21/133 (15%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVE 158
A + + V+I+++ +SG+ + V + R +++
Sbjct: 110 DSVVAAQAIVAFGQQHDEHFDVWIEIDCDG--HRSGLTVDD-PALVDVARTLVEGGMHLR 166
Query: 159 GLMCIP-------------PAMGNPKPHFYLLSEIARECKLT--KLSMGMTRDFELAIA- 202
G+M + +E R+ L ++S+G T A +
Sbjct: 167 GVMTHAGSSYDLDTPEALQALAEQERRLCVSAAERIRQAGLPCAEVSIGSTPTALSAQSL 226
Query: 203 SGATSVRIGSGIF 215
G T VR G IF
Sbjct: 227 QGVTEVRAGVYIF 239
>gi|329121169|ref|ZP_08249797.1| alanine racemase [Dialister micraerophilus DSM 19965]
gi|327470251|gb|EGF15712.1| alanine racemase [Dialister micraerophilus DSM 19965]
Length = 365
Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 4/94 (4%)
Query: 95 DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ 154
D+I + + ++ + V + V+TG + GI ++ +F+ ++
Sbjct: 96 DMIMPIDDTVDLKTMEAVAAVSNKEVKVMLTVDTGM--NRLGIHLDKIPEFLKKLKRYPH 153
Query: 155 LNVEGLMCIPPAMGNPKPHF--YLLSEIARECKL 186
L + G F L E + +L
Sbjct: 154 LKLHGTFTHMATADEKDKTFAIAQLKEFEKALEL 187
>gi|296119501|ref|ZP_06838059.1| diaminopimelate decarboxylase [Corynebacterium ammoniagenes DSM
20306]
gi|295967384|gb|EFG80651.1| diaminopimelate decarboxylase [Corynebacterium ammoniagenes DSM
20306]
Length = 445
Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 14/94 (14%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQV------------NTGYEIQKSGIMPN--QTKDF 145
+ + LL L K PV I+V T +E QK GI + +
Sbjct: 136 IDSAQELELLDLIAAKAQHVQPVLIRVTPGVDAHTHEFIATSHEDQKFGISLATGEAFEA 195
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
V C + L + GL C + F L +E
Sbjct: 196 VKACLRAENLTLVGLHCHVGSQVFDAEGFKLAAE 229
>gi|289646519|ref|ZP_06477862.1| alanine racemase domain-containing protein [Pseudomonas syringae
pv. aesculi str. 2250]
Length = 378
Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 44/133 (33%), Gaps = 21/133 (15%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVE 158
A + + V+I+++ +SG+ + V + R +++
Sbjct: 110 DSVVAAQAIVAFGQQHDEHFDVWIEIDCDG--HRSGLTVDD-PALVDVARTLVEGGMHLR 166
Query: 159 GLMCIP-------------PAMGNPKPHFYLLSEIARECKLT--KLSMGMTRDFELAIA- 202
G+M + +E R+ L ++S+G T A +
Sbjct: 167 GVMTHAGSSYDLDTPEALQALAEQERRLCVSAAERIRQAGLPCAEVSIGSTPTALSAQSL 226
Query: 203 SGATSVRIGSGIF 215
G T VR G IF
Sbjct: 227 QGVTEVRAGVYIF 239
>gi|317492318|ref|ZP_07950747.1| alanine racemase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316919657|gb|EFV40987.1| alanine racemase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 356
Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 13/134 (9%)
Query: 97 IETVSREKTASLLSLE-------MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
++ + R + + + E + S + +Y++VNTG + G MP Q
Sbjct: 88 LQLIDRYRLTTTIHNESQLQILGRARLSAPVDIYLKVNTGM--HRLGFMPEQLMAIYHSA 145
Query: 150 RQKYQLNVEGLMCIPPAMGN---PKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT 206
R ++ LM N + + A + + A
Sbjct: 146 RALPNVDHITLMTHFANADNHLGVESPLAAFNAAAVDISAPRCLANSAATLWHQPTH-AD 204
Query: 207 SVRIGSGIFGERPC 220
VR G ++G P
Sbjct: 205 WVRPGIVLYGASPT 218
>gi|291087150|ref|ZP_06345528.2| alanine racemase [Clostridium sp. M62/1]
gi|291075783|gb|EFE13147.1| alanine racemase [Clostridium sp. M62/1]
Length = 414
Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 8/88 (9%)
Query: 103 EKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKYQLNVEGLM 161
E+TA S + V++ V+ G + G+ P ++ + + L +EGL
Sbjct: 115 EETAEAFSKLAGEAGIRGSVHLAVDAGM--SRIGLKPSEESLEMIDRISSLPGLFIEGLF 172
Query: 162 CIPPAMGNP-----KPHFYLLSEIAREC 184
P K F A +
Sbjct: 173 THFPRADEEDKAVTKRQFEDFRNFAAQV 200
>gi|26990430|ref|NP_745855.1| alanine racemase [Pseudomonas putida KT2440]
gi|24985399|gb|AAN69319.1|AE016569_3 alanine racemase, putative [Pseudomonas putida KT2440]
Length = 409
Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 60/163 (36%), Gaps = 19/163 (11%)
Query: 78 FIGSLQSNKVSEIVSL-----FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
F G L +++ + L +D+ E V + A + + L +++ +N+ +
Sbjct: 114 FTGQLVRVRLASLSELEDGLQYDMEELVGSAEFARQADAIAARHGKTLRIHMALNSSG-M 172
Query: 133 QKSGIMPNQT--KDFVILCRQKYQLNVEGLMC--IPPAMGNPKPHFYLLSE----IAREC 184
++G+ + + + L + LM + + +E + +
Sbjct: 173 SRNGVEMATWSGRGEALQITDQKHLKLVALMTHFAVEDKDDVRKGLAAFNEQTDWLIKHA 232
Query: 185 KLT--KLSMGMTRDF--ELAIASGATSVRIGSGIFGER-PCQT 222
+L KL++ F + VR G +FG+ P +T
Sbjct: 233 RLDRSKLTLHAANSFATLEVPEARLDMVRTGGALFGDTVPART 275
>gi|189025906|ref|YP_001933678.1| alanine racemase [Treponema pallidum subsp. pallidum SS14]
gi|20141182|sp|Q56346|ALR_TREPA RecName: Full=Alanine racemase
gi|226711066|sp|B2S3S0|ALR_TREPS RecName: Full=Alanine racemase
gi|189018481|gb|ACD71099.1| alanine racemase [Treponema pallidum subsp. pallidum SS14]
gi|291060047|gb|ADD72782.1| alanine racemase [Treponema pallidum subsp. pallidum str. Chicago]
Length = 377
Score = 38.9 bits (90), Expect = 0.47, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 9/146 (6%)
Query: 40 KKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIE 98
+ ALSCG FA +QEA + + + L + EI SL +
Sbjct: 43 DVAQAALSCGVHSFAVACVQEASQLRAAGVRAPILC------LSTPTAEEISSLIEHRVH 96
Query: 99 TVSREKTASLLSLEMIKQSRFLP--VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156
TV E+ L ++QS + V + + G P++ V + L+
Sbjct: 97 TVISERAHIALIARALRQSADTGATCGVHVKIDTGMGRIGCAPDEACALVQMVCATPGLH 156
Query: 157 VEGLMCIPPAMGNPKPHFYLLSEIAR 182
+EG+ + + +E+ R
Sbjct: 157 LEGVCTHFSVADSVRAEDLQYTEMQR 182
>gi|213582677|ref|ZP_03364503.1| putative amino acid decarboxylase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 351
Score = 38.9 bits (90), Expect = 0.48, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 13/121 (10%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN-----------TGYEIQKSGI 137
I + +I V + K + V ++V KSG+
Sbjct: 134 AIANDLYLIN-VDSLYELEHIDAISRKLKKVANVCVRVEPNVPSATHAELVTAFHAKSGL 192
Query: 138 MPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRD 196
Q ++ +++ GL M + + +P + E + + +G+ D
Sbjct: 193 DLEQAEETCRRILAMPYVHLRGLHMHVGDQVPESEPFAKATKVLVDESRRLEEVLGIKFD 252
Query: 197 F 197
Sbjct: 253 L 253
>gi|149278670|ref|ZP_01884806.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Pedobacter
sp. BAL39]
gi|149230665|gb|EDM36048.1| D-threonine aldolase, metal-activated pyridoxal enzyme [Pedobacter
sp. BAL39]
Length = 371
Score = 38.9 bits (90), Expect = 0.48, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 89 EIVSLFDVIE---TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQTKD 144
++ F V +A + + I+ + L VYI +NTG ++G D
Sbjct: 103 ALIEKFPETHFSCLVDHLASAEHIGEQAIQCGKTLTVYIDLNTGM--NRTGYPYRADLPD 160
Query: 145 FVILCRQKYQLNVEGL 160
F L GL
Sbjct: 161 FYRAIAAIPGLVPVGL 176
>gi|94312207|ref|YP_585417.1| diaminopimelate decarboxylase [Cupriavidus metallidurans CH34]
gi|93356059|gb|ABF10148.1| diaminopimelate decarboxylase (DAP decarboxylase) [Cupriavidus
metallidurans CH34]
Length = 419
Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats.
Identities = 12/104 (11%), Positives = 28/104 (26%), Gaps = 13/104 (12%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L+ + + V +++N + K G+
Sbjct: 125 VESIPELDRLNAVAGRLGKRARVSLRINPDVDAKTHPYISTGLKANKFGVAFEDVLPTYR 184
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIARECKLTKLS 190
+ V G+ C I + P+ L ++ + +
Sbjct: 185 AAAALPNIEVTGIDCHIGSQITEVAPYLEALDKVLDVVEALEAE 228
>gi|325263860|ref|ZP_08130593.1| alanine racemase [Clostridium sp. D5]
gi|324030898|gb|EGB92180.1| alanine racemase [Clostridium sp. D5]
Length = 387
Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 63/177 (35%), Gaps = 41/177 (23%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAE-----N 56
++ ++ KQ+I A ++AV K G V AE N
Sbjct: 15 AIAYNMEQMKQRIGEGA----------QIIAVIK-------MDGYGHGAVPIAEMFEENN 57
Query: 57 KL--------QEAKKKWIPLRKEWDVQLRFIGSLQSNK--VSEIVSLFDVIETVSREKTA 106
+ +EA K+ + L I Q + +++I + + ET A
Sbjct: 58 YIWGYATASLEEAIALRKEGIKKPILVLGCIFPEQYEEMILNDIRATVYMKET------A 111
Query: 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVEGLMC 162
+S R + ++I+V+TG + G +P+ + + + +EG+
Sbjct: 112 EGISKAAAALGRKVRIHIKVDTGM--GRLGFLPDTDSVKAIREISSLPNIELEGMFT 166
>gi|20141177|sp|P54918|ALR_SYNY3 RecName: Full=Alanine racemase
Length = 372
Score = 38.9 bits (90), Expect = 0.49, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 16/134 (11%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
T+ + A L + ++K + LPV+++++TG + G Q +FV L + QL +
Sbjct: 103 TLCSPEQAQLFNDILLKLGKVLPVHLKLDTGM--TRLGTPWPQAANFVGLVQSLPQLRLA 160
Query: 159 GLMCIPPAMGNPK--------PHFYLLSEIARECKLTKLSMGMTRDFELAIASGA----T 206
L +P F R+ +L + + A G
Sbjct: 161 SLYSHLATADDPNTATMLQQQERFAKAIASLRQARLPIPKLHLAN--SAATLHGQAWHYD 218
Query: 207 SVRIGSGIFGERPC 220
VR+G G++G P
Sbjct: 219 MVRVGLGLYGLYPA 232
>gi|261210168|ref|ZP_05924465.1| diaminopimelate decarboxylase [Vibrio sp. RC341]
gi|260840708|gb|EEX67257.1| diaminopimelate decarboxylase [Vibrio sp. RC341]
Length = 417
Score = 38.9 bits (90), Expect = 0.50, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++ +
Sbjct: 125 VESEPELHRLNKVAAELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAEVYR 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
L L+V G L + P + L+ + A+ + L +G
Sbjct: 185 LAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAQGIHIRHLDVG 238
>gi|239832571|ref|ZP_04680900.1| alanine racemase [Ochrobactrum intermedium LMG 3301]
gi|239824838|gb|EEQ96406.1| alanine racemase [Ochrobactrum intermedium LMG 3301]
Length = 380
Score = 38.9 bits (90), Expect = 0.50, Method: Composition-based stats.
Identities = 27/194 (13%), Positives = 66/194 (34%), Gaps = 40/194 (20%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + + I + AV K + + ++ A G F
Sbjct: 27 ALRHNYSAIARHIAPTRAA-----------AVVKADAYGLGASRVAPAFYDAGCRDFFVA 75
Query: 54 --AENKLQEAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVS--LFDVIETVSREKTAS 107
E I L+ + D L + LQ + + V+ ++ + +
Sbjct: 76 HLGE---------AIALKPFLQPDATLYVLNGLQPGTEAACARDGILPVLNSLEQIENWG 126
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM 167
L +Q R LP +Q++TG + + G+ ++ + + ++++ ++ +
Sbjct: 127 AL---AARQGRKLPALLQLDTG--MSRLGLSASEFERLLENFALLDNIDIKFVISHLASG 181
Query: 168 GNPKPHFYLLSEIA 181
P+ ++A
Sbjct: 182 DEPENA-ANARQLA 194
>gi|332529506|ref|ZP_08405464.1| diaminopimelate decarboxylase [Hylemonella gracilis ATCC 19624]
gi|332041026|gb|EGI77394.1| diaminopimelate decarboxylase [Hylemonella gracilis ATCC 19624]
Length = 440
Score = 38.9 bits (90), Expect = 0.50, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 13/103 (12%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V E +L+ + PV I+VN + K GI +
Sbjct: 144 VESEAELDVLNEVATALGKVAPVSIRVNPDVDAKTHPYISTGLKGNKFGIAHERAVAVYQ 203
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIARECKLTKL 189
+ L V G+ C I + +P+ L + + +
Sbjct: 204 HAARLPGLKVVGIDCHIGSQITEERPYLDALERVLDLVEAIEA 246
>gi|168185009|ref|ZP_02619673.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
Bf]
gi|237795433|ref|YP_002862985.1| alanine racemase, N-terminal domain-containing protein [Clostridium
botulinum Ba4 str. 657]
gi|182671931|gb|EDT83892.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
Bf]
gi|229263648|gb|ACQ54681.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
Ba4 str. 657]
Length = 353
Score = 38.9 bits (90), Expect = 0.51, Method: Composition-based stats.
Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 11/160 (6%)
Query: 24 PKDSVSLVAVSKMV-DSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLR-KEWDVQLRFIG 80
K + +VAV+K + KI A+ I A++++ E KK + + + ++L I
Sbjct: 25 KKRGIKVVAVTKTFCGNPKIAKAIAEEEVDILADSRI-ENLKKLVHINLPKMLLRLPMI- 82
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
++V E+V D I VS T LS E IKQ++ + + ++ G ++++
Sbjct: 83 ----SQVEEVVKYAD-ISLVSDIITIRELSKEAIKQNKIHSIILMIDLG-DLREGIFNEE 136
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ V + + G+ G P + LS++
Sbjct: 137 EIYITVKEILDFKSIKLMGIGTNLSCYGGVIPTYENLSQL 176
>gi|148978773|ref|ZP_01815153.1| diaminopimelate decarboxylase [Vibrionales bacterium SWAT-3]
gi|145962194|gb|EDK27478.1| diaminopimelate decarboxylase [Vibrionales bacterium SWAT-3]
Length = 417
Score = 38.9 bits (90), Expect = 0.51, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++
Sbjct: 125 VESEPELERLNKVAGELGVKAPISLRINPDVDANTHPYISTGLRDNKFGIAFDRAPAVYA 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
+ L++ G L I P + L+ ++ A + L +G
Sbjct: 185 FAQTLENLSIHGIDCHIGSQLTDIEPFIDATDRLLALIDQLRADGINIKHLDVG 238
>gi|260888171|ref|ZP_05899434.1| alanine racemase [Selenomonas sputigena ATCC 35185]
gi|260862200|gb|EEX76700.1| alanine racemase [Selenomonas sputigena ATCC 35185]
Length = 385
Score = 38.9 bits (90), Expect = 0.51, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY 153
DV +TV+ A +S E + Q + +++ ++TG + G +
Sbjct: 110 LDVTQTVANLALAKAISAEALAQEKTAKLHLAIDTGM--GRIGCTSEEASALARDIAVLP 167
Query: 154 QLNVEG 159
+ +EG
Sbjct: 168 NIELEG 173
>gi|332286107|ref|YP_004418018.1| diaminopimelate decarboxylase [Pusillimonas sp. T7-7]
gi|330430060|gb|AEC21394.1| diaminopimelate decarboxylase [Pusillimonas sp. T7-7]
Length = 420
Score = 38.9 bits (90), Expect = 0.52, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 13/94 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V E + L+ + PV ++VN + K GI + +
Sbjct: 127 VESEAELTRLAQVAQDMGKVAPVSLRVNPDVDAQTHPYISTGLKENKFGIAIEKAIEVYQ 186
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEI 180
L++ G+ C I + P+ L ++
Sbjct: 187 RAATLPSLSIVGVDCHIGSQITEVSPYLDALDKL 220
>gi|27364546|ref|NP_760074.1| diaminopimelate decarboxylase [Vibrio vulnificus CMCP6]
gi|320154948|ref|YP_004187327.1| diaminopimelate decarboxylase [Vibrio vulnificus MO6-24/O]
gi|27360665|gb|AAO09601.1| diaminopimelate decarboxylase [Vibrio vulnificus CMCP6]
gi|319930260|gb|ADV85124.1| diaminopimelate decarboxylase [Vibrio vulnificus MO6-24/O]
Length = 417
Score = 38.9 bits (90), Expect = 0.52, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++
Sbjct: 125 VESEPELERLNRVAGELGVKAPISLRINPDVDAQTHPYISTGLRDNKFGIAFDRAPAVYQ 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
+ LNV+G L I P + L+ ++ + + L +G
Sbjct: 185 FAQSLANLNVQGIDCHIGSQLTAIEPFIDATDRLLALIDDLKEQGINIRHLDVG 238
>gi|330840033|ref|YP_004414613.1| Alanine racemase [Selenomonas sputigena ATCC 35185]
gi|329747797|gb|AEC01154.1| Alanine racemase [Selenomonas sputigena ATCC 35185]
Length = 372
Score = 38.9 bits (90), Expect = 0.53, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY 153
DV +TV+ A +S E + Q + +++ ++TG + G +
Sbjct: 97 LDVTQTVANLALAKAISAEALAQEKTAKLHLAIDTGM--GRIGCTSEEASALARDIAVLP 154
Query: 154 QLNVEG 159
+ +EG
Sbjct: 155 NIELEG 160
>gi|296535458|ref|ZP_06897648.1| possible dihydrodipicolinate synthase [Roseomonas cervicalis ATCC
49957]
gi|296264217|gb|EFH10652.1| possible dihydrodipicolinate synthase [Roseomonas cervicalis ATCC
49957]
Length = 296
Score = 38.9 bits (90), Expect = 0.53, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
+VSRE+ A+++ + +R +PV + G T++ V L R+ + +
Sbjct: 55 SVSREERAAIVETVLRAAARRVPVLV-----------GTGAEDTREAVALSREAESMGAQ 103
Query: 159 GLMCIPPAMGNPKPH--FYLLSEIARECKLTKL 189
G+M IPP P F I + +
Sbjct: 104 GVMVIPPFYSVPTEDELFAHYRAIGEAIGIPVM 136
>gi|21243907|ref|NP_643489.1| diaminopimelate decarboxylase [Xanthomonas axonopodis pv. citri
str. 306]
gi|21109513|gb|AAM38025.1| diaminopimelate decarboxylase [Xanthomonas axonopodis pv. citri
str. 306]
Length = 398
Score = 38.9 bits (90), Expect = 0.53, Method: Composition-based stats.
Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 14/87 (16%)
Query: 87 VSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQ 133
+++ +L D + V L+ R +PV++++N G +
Sbjct: 107 LAQAAALPDCTVH-VESLSELERLAEVASHAGRCVPVFLRMNIAVPGAQSTRLMMGGQPS 165
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGL 160
G+ P + + L + G
Sbjct: 166 PFGLDPCDLHAAMQRLQASPSLRLAGF 192
>gi|269128052|ref|YP_003301422.1| alanine racemase domain-containing protein [Thermomonospora curvata
DSM 43183]
gi|268313010|gb|ACY99384.1| alanine racemase domain protein [Thermomonospora curvata DSM 43183]
Length = 397
Score = 38.9 bits (90), Expect = 0.53, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 14/85 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI----------MPNQTKDFVILC 149
V + L+ + L V I ++ GY + + P Q +
Sbjct: 116 VDCAEHLELIGQAAARAKAPLRVCIDIDAGYRLLGGRVRIGALRSPIHDPAQAAELARRI 175
Query: 150 RQKYQLNVEGLMC----IPPAMGNP 170
+ L++ GLM I P
Sbjct: 176 ERNPALHLAGLMAYESQIAGVGDAP 200
>gi|37678270|ref|NP_932879.1| diaminopimelate decarboxylase [Vibrio vulnificus YJ016]
gi|37197009|dbj|BAC92850.1| diaminopimelate decarboxylase [Vibrio vulnificus YJ016]
Length = 417
Score = 38.9 bits (90), Expect = 0.53, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++
Sbjct: 125 VESEPELERLNRVAGELGVKAPISLRINPDVDAQTHPYISTGLRDNKFGIAFDRAPAVYQ 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
+ LNV+G L I P + L+ ++ + + L +G
Sbjct: 185 FAQSLANLNVQGIDCHIGSQLTAIEPFIDATDRLLALIDDLKEQGINIRHLDVG 238
>gi|213420478|ref|ZP_03353544.1| putative diaminopimelate decarboxylase [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 275
Score = 38.9 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 13/121 (10%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN-----------TGYEIQKSGI 137
I + +I V + K + V ++V KSG+
Sbjct: 134 AIANDLYLIN-VDSLYELEHIDAISRKLKKVANVCVRVEPNVPSATHAELVTAFHAKSGL 192
Query: 138 MPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRD 196
Q ++ +++ GL M + + +P + E + + +G+ D
Sbjct: 193 DLEQAEETCRRILAMPYVHLRGLHMHVGDQVPESEPFAKATKVLVDESRRLEEVLGIKFD 252
Query: 197 F 197
Sbjct: 253 L 253
>gi|171060084|ref|YP_001792433.1| diaminopimelate decarboxylase [Leptothrix cholodnii SP-6]
gi|170777529|gb|ACB35668.1| diaminopimelate decarboxylase [Leptothrix cholodnii SP-6]
Length = 422
Score = 38.9 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 13/103 (12%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V E +LLS ++ PV ++VN + K GI Q
Sbjct: 129 VESESELALLSQVAVELGVRAPVSLRVNPDVDAGTHPYISTGLKGNKFGIAHEQALAVYR 188
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIARECKLTKL 189
Q + V G+ C I + P L I + +
Sbjct: 189 HAAQLPGIAVRGIDCHIGSQLTEVAPFLDALDRILDLVEAIEA 231
>gi|157368794|ref|YP_001476783.1| hypothetical protein Spro_0549 [Serratia proteamaculans 568]
gi|157320558|gb|ABV39655.1| conserved hypothetical protein [Serratia proteamaculans 568]
Length = 413
Score = 38.9 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVE 158
+ A L+ ++ + L V ++ G + G Q + L ++
Sbjct: 135 IDSLSNAQTLAAFFSQRGQTLDVLLE--LGVPGGRCGCRSVAQAERLAQEIAALPGLRLQ 192
Query: 159 GL 160
G+
Sbjct: 193 GI 194
>gi|330901748|gb|EGH33167.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 209
Score = 38.9 bits (90), Expect = 0.55, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------ 127
G L S+ S +++ + I + + L + R PV++++N
Sbjct: 99 GKLDSDLRSALLNKVEAIH-LESLNEIARLQQLAEQAGRVQPVFLRINPQLPAAQSSRLA 157
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
GI + V L ++G
Sbjct: 158 MAGTATPFGIDEADLAEAVRRVDNASHLTLKGF 190
>gi|330501238|ref|YP_004378107.1| diaminopimelate decarboxylase [Pseudomonas mendocina NK-01]
gi|328915524|gb|AEB56355.1| diaminopimelate decarboxylase [Pseudomonas mendocina NK-01]
Length = 415
Score = 38.9 bits (90), Expect = 0.56, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + PV ++VN + K GI Q +
Sbjct: 124 VESSVELERLQKVAAELGVKAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIEQAEAVYA 183
Query: 148 LCRQKYQLNVEGLMC 162
+ L+V G+ C
Sbjct: 184 RAAELPNLDVIGVDC 198
>gi|134095890|ref|YP_001100965.1| metal-activated pyridoxal protein [Herminiimonas arsenicoxydans]
gi|133739793|emb|CAL62844.1| putative amino acid aldolase/racemase [Herminiimonas
arsenicoxydans]
Length = 380
Score = 38.9 bits (90), Expect = 0.56, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 86 KVSEIVSLFDVIET---VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ- 141
KV+ V L +I+ V + + V +V+ G+ + G+ N+
Sbjct: 106 KVAMAVELAGLIQLSICVDHVAQVDAIGKAASAAGVTIIVMPEVDVGH--GRCGVDSNEA 163
Query: 142 TKDFVILCRQKYQLNVEGL 160
+ L GL
Sbjct: 164 LAALIDRIAAYPGLQFGGL 182
>gi|187930324|ref|YP_001900811.1| diaminopimelate decarboxylase [Ralstonia pickettii 12J]
gi|187727214|gb|ACD28379.1| diaminopimelate decarboxylase [Ralstonia pickettii 12J]
Length = 423
Score = 38.9 bits (90), Expect = 0.56, Method: Composition-based stats.
Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L+ + PV +++N + K G+ ++
Sbjct: 129 VESIPELHRLNDVAASMGKVAPVSLRINPDVDAKTHPYISTGLKGNKFGVAFDEVLPTYR 188
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
L+V G+ C I + P+ L ++
Sbjct: 189 AAAAMPNLHVVGIDCHIGSQITEVSPYLDALDKVLD 224
>gi|91790642|ref|YP_551594.1| D-3-hydroxyaspartate aldolase [Polaromonas sp. JS666]
gi|91699867|gb|ABE46696.1| D-3-hydroxyaspartate aldolase [Polaromonas sp. JS666]
Length = 371
Score = 38.9 bits (90), Expect = 0.56, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 7/108 (6%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
+G ++ + E+ + V L+ S L VY++V+ G + G+
Sbjct: 96 VGPVKIRHLMELARTAHLGVLVDHASQVPALAAAAQAHSVTLDVYVEVDVG--AHRCGVA 153
Query: 139 P-NQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
P + L L GL C P H E A+
Sbjct: 154 PGAEAAQLARLVVASPPLRFAGLQCYHG----PAQHLRTPRERAQAIG 197
>gi|119357521|ref|YP_912165.1| diaminopimelate decarboxylase [Chlorobium phaeobacteroides DSM 266]
gi|119354870|gb|ABL65741.1| diaminopimelate decarboxylase [Chlorobium phaeobacteroides DSM 266]
Length = 435
Score = 38.9 bits (90), Expect = 0.57, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 13/84 (15%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVIL 148
+++ + V I++N TG +K GI + ++L
Sbjct: 146 ESLSELAVIDRIAAESGNVALVAIRINPNVTAETHPYITTGDSKEKFGIDEGELDAVLML 205
Query: 149 CRQKYQLNVEGL-MCIPPAMGNPK 171
+ + + GL M I + +P+
Sbjct: 206 LSELKHVRLAGLDMHIGSQIFDPE 229
>gi|319897770|ref|YP_004135967.1| diaminopimelate decarboxylase, plp-binding [Haemophilus influenzae
F3031]
gi|317433276|emb|CBY81651.1| diaminopimelate decarboxylase, PLP-binding [Haemophilus influenzae
F3031]
Length = 415
Score = 38.9 bits (90), Expect = 0.58, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 24/117 (20%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKD 144
+E+VS K ++ + + P+ ++VN + K G+ N+ +
Sbjct: 124 VESVSELKH---INQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEARK 180
Query: 145 FVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ + L L +G
Sbjct: 181 VYNLASTLPNIKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGITLKHLDLG 237
>gi|298487275|ref|ZP_07005324.1| pyridoxal-dependent decarboxylase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298158299|gb|EFH99370.1| pyridoxal-dependent decarboxylase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 402
Score = 38.9 bits (90), Expect = 0.58, Method: Composition-based stats.
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------ 127
G L S+ S +++ + I + + L + R PV++++N
Sbjct: 99 GKLDSDLRSALLNKVEAIH-LESLNEIARLQHLAEETGRVQPVFLRINPQLPAAQSSKLA 157
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
GI + + L ++G
Sbjct: 158 MAGTATPFGIDETDLAEAIRRLDGASHLTLKGF 190
>gi|182419267|ref|ZP_02950520.1| alanine racemase [Clostridium butyricum 5521]
gi|237667853|ref|ZP_04527837.1| alanine racemase [Clostridium butyricum E4 str. BoNT E BL5262]
gi|182376907|gb|EDT74478.1| alanine racemase [Clostridium butyricum 5521]
gi|237656201|gb|EEP53757.1| alanine racemase [Clostridium butyricum E4 str. BoNT E BL5262]
Length = 388
Score = 38.9 bits (90), Expect = 0.58, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 24/132 (18%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ--TKDFVILCRQ 151
+D+ +TV + A LS + ++ ++I ++TG + + G MPN+ K+ +C
Sbjct: 98 YDIEQTVYSLEYAQNLSKTALSLNKKAKIHIALDTG--MGRIGFMPNETSLKEVSEICS- 154
Query: 152 KYQLNVEGLMCIPPAMGNPKPHF------------YLLSEIARECKLTKLS-----MGMT 194
L+V G+ + + LS++ L +S M M
Sbjct: 155 LPGLDVIGMFTHFSTADEENKDYTLEQFDKYMNFLHELSKLNISIPLKHVSNSGAIMDMP 214
Query: 195 RDFE--LAIASG 204
F+ A+ +G
Sbjct: 215 ETFKDLDAVRAG 226
>gi|218779264|ref|YP_002430582.1| Orn/DAP/Arg decarboxylase 2 [Desulfatibacillum alkenivorans AK-01]
gi|218760648|gb|ACL03114.1| Orn/DAP/Arg decarboxylase 2 [Desulfatibacillum alkenivorans AK-01]
Length = 441
Score = 38.9 bits (90), Expect = 0.59, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 16/132 (12%)
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIE-------TVSREKTASLLSLEMI 114
++ + L E + F G +++K LF +E + L+ +
Sbjct: 119 VERALALGAEDVI---FSGPGKTDK-----ELFLAVENSGRVKVLMDSLGEMDRLNRLAM 170
Query: 115 KQSRFLPVYIQVNTGYEI-QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPH 173
+ + + V +++ +K G+ ++ L ++GL +P
Sbjct: 171 QAGKRVRVGLRITPPSSPWKKFGVALANLGAAWKKAQECPGLEIQGLQFHTSWNLDPSQQ 230
Query: 174 FYLLSEIARECK 185
++ I RE
Sbjct: 231 VRTIAAIGREIG 242
>gi|242240545|ref|YP_002988726.1| Orn/DAP/Arg decarboxylase 2 [Dickeya dadantii Ech703]
gi|242132602|gb|ACS86904.1| Orn/DAP/Arg decarboxylase 2 [Dickeya dadantii Ech703]
Length = 392
Score = 38.5 bits (89), Expect = 0.60, Method: Composition-based stats.
Identities = 11/118 (9%), Positives = 35/118 (29%), Gaps = 21/118 (17%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQKSG 136
+ D + V L + + + + +++N G + G
Sbjct: 105 AVAQRIDALH-VESLNELQRLEQCAERLATPVNIMLRMNIPLEGVTGTRLMMGGKPTPFG 163
Query: 137 IMPNQTKDFVILCRQKYQLNVEG----LMC----IPPAMGNPKPHFYLLSEIARECKL 186
+ + + + L ++G LM + + + + + + R+ +
Sbjct: 164 LDVAELPAAIARIKASRGLKLQGFHFHLMSHQLEVATHLSLMRRYLDTVHQWQRQFDI 221
>gi|294666035|ref|ZP_06731296.1| diaminopimelate decarboxylase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292604175|gb|EFF47565.1| diaminopimelate decarboxylase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 398
Score = 38.5 bits (89), Expect = 0.60, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 24/117 (20%)
Query: 87 VSEIVSLFDV-IETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQ 133
+++ +L D + V L R +PV++++N G +
Sbjct: 107 LAQAAALPDCTVH-VESLSELERLVEVAAHAGRCVPVFLRMNIAVPGAQSTRLMMGGQPS 165
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEG----LMCIPPAMGNPKPHFYLLSEIARECKL 186
G+ P + + L + G LM + + L IA ++
Sbjct: 166 PFGLDPCDLHAAMQRLQASPSLRLTGFHFHLMS------HQRDATAQLHLIAAYLRI 216
>gi|257484348|ref|ZP_05638389.1| hypothetical protein PsyrptA_13912 [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|331008402|gb|EGH88458.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tabaci ATCC
11528]
Length = 402
Score = 38.5 bits (89), Expect = 0.61, Method: Composition-based stats.
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 13/93 (13%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------ 127
G L S+ S +++ + I + + L + R PV++++N
Sbjct: 99 GKLDSDLRSALLNKVEAIH-LESLNEIARLQHLAEETGRMQPVFLRINPQLPAAQSSKLA 157
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
GI + + L ++G
Sbjct: 158 MAGTATPFGIDETDLAEAIRRVDSASHLTLKGF 190
>gi|170079084|ref|YP_001735722.1| alanine racemase [Synechococcus sp. PCC 7002]
gi|169886753|gb|ACB00467.1| alanine racemase [Synechococcus sp. PCC 7002]
Length = 399
Score = 38.5 bits (89), Expect = 0.61, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 52/145 (35%), Gaps = 18/145 (12%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
E ++ +D+ T+ ++ + + + + LPV+++++TG + G + FV
Sbjct: 120 EAIAHWDLQPTLCNLSQVTIFNEALARLGKTLPVHLKIDTGM--SRLGTRWEEALPFVAA 177
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKP--------HFYLLSEIARECKLTKLSMGMTRDFELA 200
Q LN+ + +P P F + + ++ A
Sbjct: 178 VHQAPHLNIASIYSHFATADDPDPTTMDQQHQRFQAAIAKLEQQGIPIPKRHISN---SA 234
Query: 201 IASGA-----TSVRIGSGIFGERPC 220
+ VR+G I+G P
Sbjct: 235 ATLHSRDLHYDLVRLGLSIYGVYPA 259
>gi|85711583|ref|ZP_01042641.1| Diaminopimelate decarboxylase [Idiomarina baltica OS145]
gi|85694735|gb|EAQ32675.1| Diaminopimelate decarboxylase [Idiomarina baltica OS145]
Length = 417
Score = 38.5 bits (89), Expect = 0.61, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 32/114 (28%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V + PV ++VN + K GI N
Sbjct: 123 VESAAELERIEQVARALKTRAPVSLRVNPDVDAKTHPYISTGLKANKFGIAINDAMAVFR 182
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
+ + G +M P + K F LL + E +L+ L +G
Sbjct: 183 RAHTLNHIELLGADCHIGSQIMSDAPFLDAAKRMFKLLERLQEEAIELSHLDLG 236
>gi|309782874|ref|ZP_07677594.1| diaminopimelate decarboxylase [Ralstonia sp. 5_7_47FAA]
gi|308918298|gb|EFP63975.1| diaminopimelate decarboxylase [Ralstonia sp. 5_7_47FAA]
Length = 419
Score = 38.5 bits (89), Expect = 0.62, Method: Composition-based stats.
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L+ + PV +++N + K G+ ++
Sbjct: 125 VESIPELHRLNDVAASMGKVAPVSLRINPDVDAKTHPYISTGLKGNKFGVAFDEVLPTYR 184
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
L V G+ C I + P+ L ++
Sbjct: 185 AAAAMPNLRVVGIDCHIGSQITEVSPYLDALDKVLD 220
>gi|241664492|ref|YP_002982852.1| diaminopimelate decarboxylase [Ralstonia pickettii 12D]
gi|240866519|gb|ACS64180.1| diaminopimelate decarboxylase [Ralstonia pickettii 12D]
Length = 423
Score = 38.5 bits (89), Expect = 0.62, Method: Composition-based stats.
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L+ + PV +++N + K G+ ++
Sbjct: 129 VESIPELHRLNDVAASMGKVAPVSLRINPDVDAKTHPYISTGLKGNKFGVAFDEVLPTYR 188
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
L V G+ C I + P+ L ++
Sbjct: 189 AAAAMPNLRVVGIDCHIGSQITEVSPYLDALDKVLD 224
>gi|312891392|ref|ZP_07750909.1| diaminopimelate decarboxylase [Mucilaginibacter paludis DSM 18603]
gi|311296086|gb|EFQ73238.1| diaminopimelate decarboxylase [Mucilaginibacter paludis DSM 18603]
Length = 428
Score = 38.5 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 15/76 (19%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKD 144
IE+V + + L+ +++ V I++N TG E K G+ +
Sbjct: 117 IESVQELQIINDLAKA---KNKTASVAIRINPNVDAHTHHFITTGLEENKFGVNIWELPA 173
Query: 145 FVILCRQKYQLNVEGL 160
+ L G+
Sbjct: 174 VAEALAKCPHLKFLGI 189
>gi|241667406|ref|ZP_04754984.1| alanine racemase [Francisella philomiragia subsp. philomiragia ATCC
25015]
gi|254875955|ref|ZP_05248665.1| predicted protein [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|254841976|gb|EET20390.1| predicted protein [Francisella philomiragia subsp. philomiragia
ATCC 25015]
Length = 427
Score = 38.5 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 54/151 (35%), Gaps = 20/151 (13%)
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL--PVYIQVNTGYEIQKSGIMPN 140
+S + I + +D+ E + + A ++S + S L V I+V+ E +
Sbjct: 127 KSELIQAINNGWDIEEIIGSYEQAKIISDTAQQMSEILGKKVIIKVSINIETAMGRMAFR 186
Query: 141 QTKDFVILCRQKYQLNVEGLMC-IPPAMGNP-------KPHFYLLSEIARECKLTK---- 188
+ +D + + + V G+M + K EI + L +
Sbjct: 187 KVED-IKKAMKLPNIKVVGVMTHFAKDYESESVAEPATKQQLAKFDEIVSQLDLPEGTIQ 245
Query: 189 --LSMGMTRDFELAIASGATSVRIGSGIFGE 217
+ G + A VR GS I+GE
Sbjct: 246 HVANSGAAAKYPWA---RRDMVRAGSLIYGE 273
>gi|85542701|gb|ABC71322.1| alanine racemase [Acetobacter aceti]
Length = 368
Score = 38.5 bits (89), Expect = 0.63, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 7/125 (5%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
++ K ++L K + L V IQ++TG + G+ + L+V
Sbjct: 106 LNSLKQVAVLRDLAAKMDKPLDVAIQLDTGM--SRFGLSEADIHKLMATPELLEGLSVSL 163
Query: 160 LMCIPPAMGNPKP-----HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+M P+ AR LS+ + L VR G+ +
Sbjct: 164 VMSHLACADTPENAANAMQRERFENYARMLPKAALSLSASSGIFLGQPFHFDLVRPGAAL 223
Query: 215 FGERP 219
+G P
Sbjct: 224 YGVAP 228
>gi|299135496|ref|ZP_07028685.1| alanine racemase domain protein [Afipia sp. 1NLS2]
gi|298589751|gb|EFI49957.1| alanine racemase domain protein [Afipia sp. 1NLS2]
Length = 366
Score = 38.5 bits (89), Expect = 0.64, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI- 137
IG ++ +++++ V V +L+ + V I+++ G + + G+
Sbjct: 97 IGVEKAKRLAQVARTAKVGVCVDHVDQVKVLADAAREADITFDVLIEIDVG--MGRCGVT 154
Query: 138 MPNQTKDFVILCRQKYQLNVEGL 160
+ + L+ GL
Sbjct: 155 SAAEAVALAKDVAKHKNLHFSGL 177
>gi|206603531|gb|EDZ40011.1| Diaminopimelate decarboxylase [Leptospirillum sp. Group II '5-way
CG']
Length = 414
Score = 38.5 bits (89), Expect = 0.64, Method: Composition-based stats.
Identities = 30/188 (15%), Positives = 47/188 (25%), Gaps = 71/188 (37%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
A A P D + V K ++R A+ G ++F N
Sbjct: 89 ARRAGIPSDRIVFAGVGKT--EGEMREAIDAGILMF--N--------------------- 123
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI----- 132
V LS + PV ++VN +
Sbjct: 124 ----------------------VESSMELDRLSRVASSMGKVAPVALRVNPDVDPKTHPY 161
Query: 133 -------QKSGIMPNQTKDFVILCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLL 177
K GI +Q + + + + G L I P + F +
Sbjct: 162 ISTGMKKSKFGIPVDQALEEYRRAARLPGIRIVGIHQHIGSQLTEISPF----RDAFDRM 217
Query: 178 SEIARECK 185
AR K
Sbjct: 218 VAFARLLK 225
>gi|117918847|ref|YP_868039.1| diaminopimelate decarboxylase [Shewanella sp. ANA-3]
gi|117611179|gb|ABK46633.1| diaminopimelate decarboxylase [Shewanella sp. ANA-3]
Length = 414
Score = 38.5 bits (89), Expect = 0.64, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 20/104 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L+ + + PV ++VN + K GI ++ +
Sbjct: 124 VESSAELEQLNDVAGRLGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMDEAEVVFA 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE 183
L V+G+ C I P + L+ +A +
Sbjct: 184 RAHALPHLQVKGVDCHIGSQLTEIQPFLDAMDRMLALIDRLADQ 227
>gi|293390767|ref|ZP_06635101.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290951301|gb|EFE01420.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 416
Score = 38.5 bits (89), Expect = 0.65, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V E ++ + P+ ++VN + K G+ Q ++
Sbjct: 124 VESEAELLRINQVAGDIGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVEQAREVYK 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ ++ +L L +G
Sbjct: 184 LATTLPNIEIVGMDCHIGSQLTELQPFLDAADRLIMLMEQLKQDSIQLKHLDLG 237
>gi|117923575|ref|YP_864192.1| alanine racemase [Magnetococcus sp. MC-1]
gi|117607331|gb|ABK42786.1| alanine racemase [Magnetococcus sp. MC-1]
Length = 396
Score = 38.5 bits (89), Expect = 0.65, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 21/126 (16%)
Query: 109 LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL---MCIPP 165
L+ + P+ + + + + G P + +L + GL M
Sbjct: 123 LNALWQAAKCYGPISVHIKIDSGMARLGYHPEHVPSLLDQLAHMPELKLAGLVSHMACAD 182
Query: 166 AMGNP--KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT----------SVRIGSG 213
+P LS I + + +L++A+ AT VR G
Sbjct: 183 DRHSPITNAQLATLSPILEHPLVKQTQA------QLSLANSATILGHPNAHYQWVRPGIM 236
Query: 214 IFGERP 219
I+G P
Sbjct: 237 IYGASP 242
>gi|269103729|ref|ZP_06156426.1| diaminopimelate decarboxylase [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163627|gb|EEZ42123.1| diaminopimelate decarboxylase [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 417
Score = 38.5 bits (89), Expect = 0.67, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 34/104 (32%), Gaps = 20/104 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI + D
Sbjct: 125 VESEPELERLNQVAAELGVIAPISLRINPDVDAKTHPYISTGLRDNKFGITFERALDVYR 184
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE 183
L + LNV G+ C I P + L+ +A E
Sbjct: 185 LAHRLPNLNVVGMDCHIGSQLTEITPFIDAVDRLLSLIDTLADE 228
>gi|237809856|ref|YP_002894296.1| diaminopimelate decarboxylase [Tolumonas auensis DSM 9187]
gi|237502117|gb|ACQ94710.1| diaminopimelate decarboxylase [Tolumonas auensis DSM 9187]
Length = 416
Score = 38.5 bits (89), Expect = 0.67, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V E L+ + + I++N + K GI + +
Sbjct: 125 VESEPELERLNQVAGSMGKVARISIRINPDIDAGTHPYISTGLKQNKFGIPIERAPEVYR 184
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
L + G+ C I P + L+ E+ A K+ L +G
Sbjct: 185 YAASLPNLQITGVDCHIGSQLTEISPFLEAVDKLLALIDELSAAGIKIHHLDVG 238
>gi|148977324|ref|ZP_01813938.1| putative diaminopimelate decarboxylase protein [Vibrionales
bacterium SWAT-3]
gi|145963437|gb|EDK28701.1| putative diaminopimelate decarboxylase protein [Vibrionales
bacterium SWAT-3]
Length = 400
Score = 38.5 bits (89), Expect = 0.67, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 38/116 (32%), Gaps = 21/116 (18%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQKSGIMPNQ 141
D I V + K +R +++++N G + G +
Sbjct: 116 VDAIH-VESITELQRIGALTQKLNRSASIFLRMNIDIGDITLSKLAMGGKPTPFGFDEAE 174
Query: 142 TKDFVILCRQKYQLNVEG----LMC----IPPAMGNPKPHFYLLSEIARECKLTKL 189
+ ++ R + ++G LM + + + +F ++ + + L L
Sbjct: 175 LDNAIMHLRDFPLIELKGFHFHLMSHQLDVSRHLALVQRYFQVVKQWKEQYSLEDL 230
>gi|317494190|ref|ZP_07952606.1| diaminopimelate decarboxylase [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316917963|gb|EFV39306.1| diaminopimelate decarboxylase [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 465
Score = 38.5 bits (89), Expect = 0.68, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 12/110 (10%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------TGYEI-----QKSGIMPNQTKDFVIL 148
V + + + V ++V T E+ KSG+ Q ++
Sbjct: 144 VDSLYELDHIDEISRRLKKTANVCVRVEPNVPSATHAELVTAFHAKSGLDLEQAEETCRR 203
Query: 149 CRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDF 197
Q + + GL M + + +P + E + + +G+ D
Sbjct: 204 ILQMPYVKLRGLHMHVGDQVPESEPFAKATKVLVDESRRLEEVLGIKFDL 253
>gi|254430331|ref|ZP_05044034.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Cyanobium sp. PCC 7001]
gi|197624784|gb|EDY37343.1| UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
[Cyanobium sp. PCC 7001]
Length = 829
Score = 38.5 bits (89), Expect = 0.68, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 42/132 (31%), Gaps = 19/132 (14%)
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161
A L + L V++++ TG + G+ P + L R + V G+M
Sbjct: 558 SLPFAQALVRTLQSMGAHLEVHLEIETGM--GRLGVAPEEALAAARLLRDSGVVTVTGVM 615
Query: 162 C------IPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA--------TS 207
P A + + +G A SGA
Sbjct: 616 THLAGADDPAADDETRAQLERFDAVMARL---HQELGTPLLVHAAATSGAVRFPQSRYGM 672
Query: 208 VRIGSGIFGERP 219
VR+G G+FG P
Sbjct: 673 VRLGLGLFGLHP 684
>gi|72162824|ref|YP_290481.1| diaminopimelate decarboxylase [Thermobifida fusca YX]
gi|71916556|gb|AAZ56458.1| diaminopimelate decarboxylase [Thermobifida fusca YX]
Length = 461
Score = 38.5 bits (89), Expect = 0.68, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 22/102 (21%)
Query: 79 IGSLQSNKVSEIVSLFDVIE------TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE- 131
IG + N L +E + L ++ R V I+V TG E
Sbjct: 133 IG-MHGNN-KSAAELARAVEVGVGRIIIDSFDEIDRLERIAAERGRVPEVLIRVTTGVEA 190
Query: 132 -----------IQKSGIMPN--QTKDFVILCRQKYQLNVEGL 160
QK G+ + + V L + GL
Sbjct: 191 HTHEFVATAHDDQKFGLSLSNGAAAEAVRRLLTSPHLRLVGL 232
>gi|149191481|ref|ZP_01869730.1| diaminopimelate decarboxylase [Vibrio shilonii AK1]
gi|148834669|gb|EDL51657.1| diaminopimelate decarboxylase [Vibrio shilonii AK1]
Length = 417
Score = 38.5 bits (89), Expect = 0.70, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++
Sbjct: 125 VESEPELERLNQVAGEMGVVAPISLRINPDVDANTHPYISTGLRDNKFGIAFDRAPAVYK 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
+ L V G L I P + L+ ++ A + L +G
Sbjct: 185 FAQSLPNLAVHGIDCHIGSQLTDIEPFIDATDRLLALIDQLRADGVNIKHLDVG 238
>gi|311277684|ref|YP_003939915.1| alanine racemase domain-containing protein [Enterobacter cloacae
SCF1]
gi|308746879|gb|ADO46631.1| alanine racemase domain protein [Enterobacter cloacae SCF1]
Length = 387
Score = 38.5 bits (89), Expect = 0.71, Method: Composition-based stats.
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQ 154
T+ + A +S ++ V ++V + Q+SG + V +
Sbjct: 125 TLFSLEKAHEVSRAAVRAGVTQSVMLKVYGEQDFLYPGQESGFALSDLAAAVEALQVMPG 184
Query: 155 LNVEGL 160
+ + GL
Sbjct: 185 IQLVGL 190
>gi|282860859|ref|ZP_06269925.1| alanine racemase [Streptomyces sp. ACTE]
gi|282564595|gb|EFB70131.1| alanine racemase [Streptomyces sp. ACTE]
Length = 384
Score = 38.5 bits (89), Expect = 0.71, Method: Composition-based stats.
Identities = 34/179 (18%), Positives = 55/179 (30%), Gaps = 32/179 (17%)
Query: 1 MSLGNKLQVFKQKIENSAILAK----RPKDS-VSLVAVSK----MVDS-KKIRVALSCGQ 50
M+ L+ + +I+ +A+ A R + S L+AV K + R AL G
Sbjct: 1 MNETASLRA-RAEIDLAALRANVRVLRARASGAQLMAVVKSDAYGHGALPCARAALEAGA 59
Query: 51 VIFAENKLQEAKKKWIPLRKEWDVQLRFI-GSLQSNKVSEIVSLFDVIE-----TVSREK 104
QEA + + G + IE +VS
Sbjct: 60 TWLGTATPQEALALREAGVGGRVMCWLWTPGG----------PWREAIEADIDVSVSGMW 109
Query: 105 TASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ---LNVEGL 160
+ R V Q+ + ++G P + V R + L V GL
Sbjct: 110 ALREVVEAATAAGRPARV--QLKADTGLGRNGCQPADWPELVSAARGAEEAGTLRVTGL 166
>gi|299133317|ref|ZP_07026512.1| alanine racemase [Afipia sp. 1NLS2]
gi|298593454|gb|EFI53654.1| alanine racemase [Afipia sp. 1NLS2]
Length = 383
Score = 38.5 bits (89), Expect = 0.72, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 63/189 (33%), Gaps = 24/189 (12%)
Query: 43 RVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFI-GSLQSNKVSEIVSLFDVIETVS 101
R + G F L E L + + FI L E + ++ ++
Sbjct: 54 RALFAEGCRHFFVAHLDEGLALRPYLPRSAAI---FILNGLPRGAERECAA-AGLVPVLN 109
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161
+ A + + + LP +QV++G + G+ + F + +++ +M
Sbjct: 110 SPEQAGAWAGCARTRGQRLPAVLQVDSGM--NRLGLTAGEAARFAETPARSGVVDLRYIM 167
Query: 162 CIPPAMGNPKPH--------FYLLSEIARECKLTKL-SMGM--TRDFELAIASGATSVRI 210
P F L+ + + + S G+ D+ + VR
Sbjct: 168 SHLACADTPAHEANAMQLATFRQLAGLFPDVPRSLANSSGIFLGPDYHF------SLVRP 221
Query: 211 GSGIFGERP 219
GS ++G P
Sbjct: 222 GSALYGVNP 230
>gi|194290982|ref|YP_002006889.1| diaminopimelate decarboxylase protein [Cupriavidus taiwanensis LMG
19424]
gi|193224817|emb|CAQ70828.1| DIAMINOPIMELATE DECARBOXYLASE PROTEIN [Cupriavidus taiwanensis LMG
19424]
Length = 419
Score = 38.5 bits (89), Expect = 0.72, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 13/104 (12%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L+ + + V +++N + K GI
Sbjct: 125 VESIPELDRLNEVAGRVGKRARVSLRINPDVDARTHPYISTGLKGNKFGIAFEDVLPTYR 184
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIARECKLTKLS 190
L V G+ C I + +P+ L ++ + +
Sbjct: 185 AAAALPHLAVTGIDCHIGSQITEVEPYLEALDKVLDVVEALERE 228
>gi|110799046|ref|YP_695763.1| alanine racemase family protein [Clostridium perfringens ATCC
13124]
gi|182626219|ref|ZP_02953977.1| alanine racemase family protein [Clostridium perfringens D str.
JGS1721]
gi|110673693|gb|ABG82680.1| alanine racemase family protein [Clostridium perfringens ATCC
13124]
gi|177908483|gb|EDT71016.1| alanine racemase family protein [Clostridium perfringens D str.
JGS1721]
Length = 350
Score = 38.5 bits (89), Expect = 0.72, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 95 DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKY 153
++I T+ E+ + L E K+ V+I V+TG + GI PN+ F+ + +
Sbjct: 93 NLILTLDNEEILNELDKETKKR-----VHIYVDTGM--NRMGIKPNKLDSFIERIKNEFP 145
Query: 154 QLNVEGLMCIPPAMGNPKPHFYLLSEI 180
L ++G+ + N K Y L +I
Sbjct: 146 NLEIDGIYT---HLHNAKDVNYTLKQI 169
>gi|312880008|ref|ZP_07739808.1| alanine racemase domain protein [Aminomonas paucivorans DSM 12260]
gi|310783299|gb|EFQ23697.1| alanine racemase domain protein [Aminomonas paucivorans DSM 12260]
Length = 354
Score = 38.5 bits (89), Expect = 0.73, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 17/125 (13%)
Query: 104 KTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG---- 159
+T L + R + V+ G + G++P + + C + VEG
Sbjct: 103 ETLEALEELCRSRGRTFRAVVMVDVG--DLREGVLPEELESLGRRCAALRHVVVEGLGTN 160
Query: 160 LMCIPPAMGNPKPHFYLL--SEIARECKLTKL---SMGMTRDFELAIASGA-----TSVR 209
L C + P+ LL +E RE + S G T +L + G +R
Sbjct: 161 LGCFGGILATPENLTELLQGAERFREASGLEAPLVSGGATLSLKL-LEEGTLPRGINHLR 219
Query: 210 IGSGI 214
+G +
Sbjct: 220 VGEAL 224
>gi|297185095|gb|ADI21204.1| hypothetical protein [uncultured gamma proteobacterium EB750_07C09]
Length = 56
Score = 38.5 bits (89), Expect = 0.73, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 140 NQTKDFVILCRQKYQLNVEGLMCIPP---AMGNPKPHFYLLS---EIARE 183
+ + +L + GLMCIP + + F L E RE
Sbjct: 6 DNLLELSQAIIDLPKLTLRGLMCIPAIYHEYEDQRKPFAKLRYXNEFFRE 55
>gi|239624944|ref|ZP_04667975.1| D-threonine aldolase [Clostridiales bacterium 1_7_47_FAA]
gi|239521330|gb|EEQ61196.1| D-threonine aldolase [Clostridiales bacterium 1_7_47FAA]
Length = 374
Score = 38.5 bits (89), Expect = 0.73, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 4/82 (4%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
E L + V + VN G + ++G+ T+ F + C +++ GL
Sbjct: 116 DNEDQIRALGQLCSEAGLRANVLVDVNLGMD--RTGVPVKDTEAFFMDCALMDGVSMMGL 173
Query: 161 MCIPPAMGNPKPHFYLLSEIAR 182
C + F + A
Sbjct: 174 HCYDGHR--TEHDFTQRKKEAD 193
>gi|311103295|ref|YP_003976148.1| metal-activated pyridoxal enzyme [Achromobacter xylosoxidans A8]
gi|310757984|gb|ADP13433.1| metal-activated pyridoxal enzyme [Achromobacter xylosoxidans A8]
Length = 379
Score = 38.5 bits (89), Expect = 0.73, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVE 158
V + + LS M++ + V ++V+ G + G+ + R LN
Sbjct: 125 VDNAQNLAQLSAAMVQAGAEIDVLVEVDVGQ--GRCGVSDDATVLALAQQARALPGLNFA 182
Query: 159 GL 160
GL
Sbjct: 183 GL 184
>gi|260774852|ref|ZP_05883754.1| diaminopimelate decarboxylase [Vibrio coralliilyticus ATCC BAA-450]
gi|260609277|gb|EEX35432.1| diaminopimelate decarboxylase [Vibrio coralliilyticus ATCC BAA-450]
Length = 417
Score = 38.5 bits (89), Expect = 0.73, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++
Sbjct: 125 VESEPELERLNKVAGELGVKAPISLRINPDVDANTHPYISTGLRDNKFGIAFDRAPAVYQ 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
+ L ++G L I P + L+ ++ A+ + L +G
Sbjct: 185 FAQGLKNLTIKGIDCHIGSQLTDIEPFIDATDRLLALIDDLKAQGINIEHLDVG 238
>gi|168210753|ref|ZP_02636378.1| alanine racemase family protein [Clostridium perfringens B str.
ATCC 3626]
gi|170711187|gb|EDT23369.1| alanine racemase family protein [Clostridium perfringens B str.
ATCC 3626]
Length = 350
Score = 38.5 bits (89), Expect = 0.73, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 95 DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKY 153
++I T+ E+ + L E K+ V+I V+TG + GI PN+ F+ + +
Sbjct: 93 NLILTLDNEEILNELDKETKKR-----VHIYVDTGM--NRMGIKPNKLDSFIERIKNEFP 145
Query: 154 QLNVEGLMCIPPAMGNPKPHFYLLSEI 180
L ++G+ + N K Y L +I
Sbjct: 146 NLEIDGIYT---HLHNAKDVNYTLKQI 169
>gi|114049121|ref|YP_739671.1| diaminopimelate decarboxylase [Shewanella sp. MR-7]
gi|113890563|gb|ABI44614.1| diaminopimelate decarboxylase [Shewanella sp. MR-7]
Length = 414
Score = 38.5 bits (89), Expect = 0.73, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 20/104 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L+ + + PV ++VN + K GI ++ +
Sbjct: 124 VESSAELEQLNQVAGRLGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMDEAEVVFA 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE 183
L V+G+ C I P + L+ +A +
Sbjct: 184 RAHALPHLQVKGVDCHIGSQLTEIQPFLDAMDRMLALIDRLAEQ 227
>gi|127511256|ref|YP_001092453.1| diaminopimelate decarboxylase [Shewanella loihica PV-4]
gi|126636551|gb|ABO22194.1| diaminopimelate decarboxylase [Shewanella loihica PV-4]
Length = 414
Score = 38.5 bits (89), Expect = 0.75, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L+L ++ + PV ++VN + K GI + + +
Sbjct: 124 VESAAELEQLNLVALRLGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMEEAEAIFL 183
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
+ L V+G L + P + L+ +A + K+ L +G
Sbjct: 184 RANELPGLAVKGADCHIGSQLTELQPFLDAMDRMLALIDRLAEQGVKIAHLDVG 237
>gi|193077032|gb|ABO11785.2| alanine racemase [Acinetobacter baumannii ATCC 17978]
Length = 430
Score = 38.5 bits (89), Expect = 0.76, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 15/142 (10%)
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI--MPNQTKDFVIL 148
++ E + A+ +S + + + +N+G + ++G+ Q K+ +
Sbjct: 135 AHALNIEELLGNYDQATRISKWAEANNTTVHYSLALNSGG-MDRNGLEMSTAQGKEQAVA 193
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE---------CKLTKLSMGMTRDFEL 199
+ L ++G+M A+ + K L++ + +L++ F
Sbjct: 194 ITKLPNLKIDGIMT-HYAVEDEKYVRERLAQFNEQTAWLIKKAKLNRKELTLHTANSFAT 252
Query: 200 AIASGAT--SVRIGSGIFGERP 219
+ VR G+ I+G+ P
Sbjct: 253 VNVPESHLDMVRAGAIIYGDFP 274
>gi|188996497|ref|YP_001930748.1| diaminopimelate decarboxylase [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931564|gb|ACD66194.1| diaminopimelate decarboxylase [Sulfurihydrogenibium sp. YO3AOP1]
Length = 419
Score = 38.5 bits (89), Expect = 0.76, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V +++ KQ + V I+VN + K GI +Q D
Sbjct: 128 VESFMELDVINEIAGKQEKKANVSIRVNPNVDPKTHPYISTGLKKSKFGIDIDQALDAYK 187
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
+ LNV G +M I + L+ ++ +E +L + MG
Sbjct: 188 KAAKLENLNVVGVHCHIGSQIMDISVFREAAEKVVDLVFKLKKEGIELKFIDMG 241
>gi|126176184|ref|YP_001052333.1| diaminopimelate decarboxylase [Shewanella baltica OS155]
gi|160877194|ref|YP_001556510.1| diaminopimelate decarboxylase [Shewanella baltica OS195]
gi|125999389|gb|ABN63464.1| diaminopimelate decarboxylase [Shewanella baltica OS155]
gi|160862716|gb|ABX51250.1| diaminopimelate decarboxylase [Shewanella baltica OS195]
gi|315269398|gb|ADT96251.1| diaminopimelate decarboxylase [Shewanella baltica OS678]
Length = 414
Score = 38.5 bits (89), Expect = 0.76, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 20/104 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V LL+L + + PV +++N + K GI ++ +
Sbjct: 124 VESSAELELLNLVAGRLGKVAPVSLRINPDVDAGTHPYISTGLKENKFGIAMDEAEIVFA 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE 183
L V+G+ C I P + L+ +A +
Sbjct: 184 RAHALPHLKVKGVDCHIGSQLTEIKPFLDAMDRMLALIDRLAEQ 227
>gi|254690758|ref|ZP_05154012.1| Alr, alanine racemase [Brucella abortus bv. 6 str. 870]
gi|256255941|ref|ZP_05461477.1| Alr, alanine racemase [Brucella abortus bv. 9 str. C68]
gi|260756329|ref|ZP_05868677.1| alanine racemase [Brucella abortus bv. 6 str. 870]
gi|260882153|ref|ZP_05893767.1| alanine racemase [Brucella abortus bv. 9 str. C68]
gi|297249298|ref|ZP_06932999.1| alanine racemase [Brucella abortus bv. 5 str. B3196]
gi|260676437|gb|EEX63258.1| alanine racemase [Brucella abortus bv. 6 str. 870]
gi|260871681|gb|EEX78750.1| alanine racemase [Brucella abortus bv. 9 str. C68]
gi|297173167|gb|EFH32531.1| alanine racemase [Brucella abortus bv. 5 str. B3196]
Length = 399
Score = 38.5 bits (89), Expect = 0.77, Method: Composition-based stats.
Identities = 33/240 (13%), Positives = 71/240 (29%), Gaps = 50/240 (20%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + +I + AV K + + ++ A G F
Sbjct: 27 ALRHNYSAIATRIAPTRTA-----------AVVKADAYGLGASRVAPAFYEAGCRDFFVA 75
Query: 54 --AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
E + + D L + LQ + ++ ++ + +
Sbjct: 76 HLGE-------AVALKPFLKPDATLYVLNGLQPGTEAACARE-GILPVLNSLEQVENWAA 127
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI-------- 163
+ + LP +Q +TG + G+ + + +++++ I
Sbjct: 128 LATRLGKKLPALLQFDTGM--SRLGLSAKEFDRLLENVTLLSRIDIK--FAISHLANGDE 183
Query: 164 PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT----SVRIGSGIFGERP 219
P N + +++ +AR KL F G T R G ++G P
Sbjct: 184 PGNAVNARQLAKMMALLARLPKLPAALANSGGTFL-----GKTYYFDLARPGIALYGIDP 238
>gi|289207307|ref|YP_003459373.1| diaminopimelate decarboxylase [Thioalkalivibrio sp. K90mix]
gi|288942938|gb|ADC70637.1| diaminopimelate decarboxylase [Thioalkalivibrio sp. K90mix]
Length = 434
Score = 38.1 bits (88), Expect = 0.78, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 33/114 (28%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V L + PV I+VN TG K G+ +
Sbjct: 124 VESAPELERLESIAAEMGVTAPVSIRVNPDVDAETHPYIATGLRENKFGVAIEEAPALYA 183
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
R L G L I P K L+ ++A + +L + +G
Sbjct: 184 RVRDSQHLEATGVDFHIGSQLTRIDPFTDALKRVLTLVDQLAADGIELEHIDVG 237
>gi|222099835|ref|YP_002534403.1| Alanine racemase domain protein [Thermotoga neapolitana DSM 4359]
gi|221572226|gb|ACM23038.1| Alanine racemase domain protein [Thermotoga neapolitana DSM 4359]
Length = 375
Score = 38.1 bits (88), Expect = 0.78, Method: Composition-based stats.
Identities = 42/227 (18%), Positives = 82/227 (36%), Gaps = 32/227 (14%)
Query: 6 KLQVFKQKIENSAILAKRPKDSVSLVAVSK-MVDSKKIRVAL-SCGQVIFAENKLQEAKK 63
L+ ++ +A+ K + +V V+K + + AL G I E++L
Sbjct: 30 NLKEIEENARKVVQMAE--KRGIEIVGVTKVTLGDPRFAEALKRAGIKILGESRL----- 82
Query: 64 KWIPLRKEWDVQLRFI---GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
K + K+ ++ F+ + S V ++ FD I VS K A ++ + R +
Sbjct: 83 KNVLRMKKAGIEGPFMLLRLPMMSELVEDV-KHFDYI-MVSDPKVARMVEELSKETGRNV 140
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-------IPPAMGNPKPH 173
+ ++ G + G+ + V Q ++ G+ I P +
Sbjct: 141 KIIYMIDVG--DLREGVWYEKA---VEEISQCNPSSISGIGTNFGCYGGIIPTKEKFEML 195
Query: 174 FYLLSEIARECKLT--KLSMGMTRDFEL----AIASGATSVRIGSGI 214
+ ++ +E +S G T I G +RIG I
Sbjct: 196 LSIKEKLEKEHGFNIEIVSGGNTPTLLALESGEIPEGVNQLRIGEAI 242
>gi|124516709|gb|EAY58217.1| Diaminopimelate decarboxylase [Leptospirillum rubarum]
Length = 414
Score = 38.1 bits (88), Expect = 0.78, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 30/106 (28%), Gaps = 24/106 (22%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V LS + PV ++VN + K GI +Q +
Sbjct: 124 VESSMELDRLSRVASSMGKVAPVALRVNPDVDPKTHPYISTGMKKSKFGIPVDQALEEYR 183
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARECK 185
+ + + G L I P + F + AR K
Sbjct: 184 RAARLPGIRIVGIHQHIGSQLTEISPF----RDAFDRMVAFARLLK 225
>gi|163845038|ref|YP_001622693.1| alanine racemase [Brucella suis ATCC 23445]
gi|189027530|sp|A9WVT5|ALR_BRUSI RecName: Full=Alanine racemase
gi|163675761|gb|ABY39871.1| alanine racemase [Brucella suis ATCC 23445]
Length = 396
Score = 38.1 bits (88), Expect = 0.79, Method: Composition-based stats.
Identities = 35/242 (14%), Positives = 73/242 (30%), Gaps = 54/242 (22%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + +I + AV K + + ++ A G F
Sbjct: 24 ALRHNYSAIATRIAPTRTA-----------AVVKADAYGLGASRVAPAFYEAGCRDFFVA 72
Query: 54 --AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS--LFDVIETVSREKTASLL 109
E + + D L + LQ + + V+ ++ + + + L
Sbjct: 73 HLGE-------AVALKPFLKPDATLYVLNGLQPGTQAACAREGILPVLNSLEQVENWAAL 125
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI------ 163
+ + LP +Q +TG + G+ + + +++++ I
Sbjct: 126 ---ATRLGKKLPALLQFDTGM--SRLGLSAKEFDRLLENVTLLSRIDIK--FAISHLANG 178
Query: 164 --PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT----SVRIGSGIFGE 217
P N + + + +AR KL F G T R G ++G
Sbjct: 179 DEPGNAANARQLAKMTALLARLPKLPAALANSGGTFL-----GKTYYFDLARPGIALYGI 233
Query: 218 RP 219
P
Sbjct: 234 DP 235
>gi|108757300|ref|YP_634066.1| diaminopimelate decarboxylase [Myxococcus xanthus DK 1622]
gi|108461180|gb|ABF86365.1| diaminopimelate decarboxylase [Myxococcus xanthus DK 1622]
Length = 413
Score = 38.1 bits (88), Expect = 0.80, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 13/95 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V + L + R P ++VN + K G+ +
Sbjct: 124 VESAEELEALDAVGRRLGRRAPFALRVNPDVDARTHRYISTGLKTSKFGVPFEEAVALYA 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIA 181
++ L GL C I + P LS++A
Sbjct: 184 RAKKMKGLLAAGLDCHIGSQLTQTAPIRAALSKVA 218
>gi|325579300|ref|ZP_08149256.1| diaminopimelate decarboxylase [Haemophilus parainfluenzae ATCC
33392]
gi|325159535|gb|EGC71669.1| diaminopimelate decarboxylase [Haemophilus parainfluenzae ATCC
33392]
Length = 416
Score = 38.1 bits (88), Expect = 0.80, Method: Composition-based stats.
Identities = 14/114 (12%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V ++ + + P+ ++VN + K G+ ++ ++
Sbjct: 124 VESVAELHHINQIAGEMGKVAPISLRVNPDVDAHTHPYISTGLKENKFGVSVDEAREVYK 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ + L L +G
Sbjct: 184 LATTLPHVKITGMDCHIGSQLTELQPFLDATDRLIRLIEQLKEDGITLKHLDLG 237
>gi|237797381|ref|ZP_04585842.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331020231|gb|EGI00288.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 402
Score = 38.1 bits (88), Expect = 0.81, Method: Composition-based stats.
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 13/93 (13%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------ 127
G L S+ S +++ + + + L + R PV+I++N
Sbjct: 99 GKLDSDLRSALLNKVEAVH-LESLNEIQRLQHLAEETGRVQPVFIRINPHLPAEQSSKLA 157
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
GI V L L ++G
Sbjct: 158 MAGTATPFGIDEADLTQAVSLVDSASHLTLKGF 190
>gi|146305308|ref|YP_001185773.1| diaminopimelate decarboxylase [Pseudomonas mendocina ymp]
gi|145573509|gb|ABP83041.1| diaminopimelate decarboxylase [Pseudomonas mendocina ymp]
Length = 415
Score = 38.1 bits (88), Expect = 0.81, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + PV ++VN + K GI Q +
Sbjct: 124 VESSVELERLQKVAAELGLKAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIEQAEAVYA 183
Query: 148 LCRQKYQLNVEGLMC 162
+ L V G+ C
Sbjct: 184 RAAELPNLEVVGVDC 198
>gi|328957818|ref|YP_004375204.1| hypothetical protein CAR_c15290 [Carnobacterium sp. 17-4]
gi|328674142|gb|AEB30188.1| conserved hypothetical protein [Carnobacterium sp. 17-4]
Length = 385
Score = 38.1 bits (88), Expect = 0.82, Method: Composition-based stats.
Identities = 9/79 (11%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI----QKSGIMPNQTKDFVILCRQKYQ 154
TV + ++ + + ++V + + Q G + + L ++
Sbjct: 125 TVYSLEKLQAINGLAKEIGIKQKILLRVVSDEDELYPGQYGGFTLKELPSLISLFKELKY 184
Query: 155 LNVEGLMCIPPAMGNPKPH 173
+ + G+ P + N +
Sbjct: 185 IEISGVTSFPCFLYNAEKE 203
>gi|261320388|ref|ZP_05959585.1| alanine racemase [Brucella ceti M644/93/1]
gi|261293078|gb|EEX96574.1| alanine racemase [Brucella ceti M644/93/1]
Length = 396
Score = 38.1 bits (88), Expect = 0.82, Method: Composition-based stats.
Identities = 35/242 (14%), Positives = 73/242 (30%), Gaps = 54/242 (22%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + +I + AV K + + ++ A G F
Sbjct: 24 ALRHNYSAIATRIAPTRTA-----------AVVKADAYGLGASRVAPAFYEAGCRDFFVA 72
Query: 54 --AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS--LFDVIETVSREKTASLL 109
E + + D L + LQ + + V+ ++ + + + L
Sbjct: 73 HLGE-------AVALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAAL 125
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI------ 163
+ + LP +Q +TG + G+ + + +++++ I
Sbjct: 126 ---ATRLGKKLPALLQFDTGM--SRLGLSAKEFDRLLENVTLLSRIDIK--FAISHLANG 178
Query: 164 --PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT----SVRIGSGIFGE 217
P N + + + +AR KL F G T R G ++G
Sbjct: 179 DEPGNAANARQLAKMTALLARLPKLPAALANSGGTFL-----GKTYYFDLARPGIALYGI 233
Query: 218 RP 219
P
Sbjct: 234 DP 235
>gi|260430565|ref|ZP_05784538.1| metal-activated pyridoxal enzyme [Citreicella sp. SE45]
gi|260418594|gb|EEX11851.1| metal-activated pyridoxal enzyme [Citreicella sp. SE45]
Length = 387
Score = 38.1 bits (88), Expect = 0.82, Method: Composition-based stats.
Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVE 158
V + LS + L +++++ G + G+ + + L
Sbjct: 130 VDDLANVAELSEAAQRHGTTLECFVEIDCG--AGRCGVTTAEAVVEIAQAIDAAEGLRFT 187
Query: 159 GL 160
G+
Sbjct: 188 GI 189
>gi|111225759|ref|YP_716553.1| putative diaminopimelate decarboxylase protein [Frankia alni
ACN14a]
gi|111153291|emb|CAJ65043.1| putative diaminopimelate decarboxylase protein [Frankia alni
ACN14a]
Length = 476
Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 11/72 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN-----------TGYEIQKSGIMPNQTKDFVIL 148
V L + R + V ++VN G G+ ++ + L
Sbjct: 184 VESPGELRRLEAVAARFGRRVTVAVRVNPARVALAGSLQMGGRPSAFGVPESEVPAVLDL 243
Query: 149 CRQKYQLNVEGL 160
R+ L+V G
Sbjct: 244 ARRLPHLDVAGF 255
>gi|170761414|ref|YP_001787394.1| alanine racemase domain-containing protein [Clostridium botulinum
A3 str. Loch Maree]
gi|169408403|gb|ACA56814.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
A3 str. Loch Maree]
Length = 353
Score = 38.1 bits (88), Expect = 0.84, Method: Composition-based stats.
Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 11/160 (6%)
Query: 24 PKDSVSLVAVSKMV-DSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLR-KEWDVQLRFIG 80
K + +VAV+K + KI A+ I A++++ E KK + + + ++L I
Sbjct: 25 KKRGIKVVAVTKTFCGNPKIAKAIAEEKVDILADSRI-ENLKKLVHINLPKMLLRLPMI- 82
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
++V E+V D I VS T LS E IKQ++ + + ++ G ++++
Sbjct: 83 ----SQVEEVVKYAD-ISLVSDIITIRELSKETIKQNKIHSIILMIDLG-DLREGIFNEE 136
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ V + + G+ G P + LS++
Sbjct: 137 EIYITVEEILNFKSVKLMGIGTNLSCYGGVIPTYKNLSQL 176
>gi|326388436|ref|ZP_08210032.1| alanine racemase [Novosphingobium nitrogenifigens DSM 19370]
gi|326207168|gb|EGD57989.1| alanine racemase [Novosphingobium nitrogenifigens DSM 19370]
Length = 372
Score = 38.1 bits (88), Expect = 0.85, Method: Composition-based stats.
Identities = 31/180 (17%), Positives = 62/180 (34%), Gaps = 33/180 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDS-----VSLVAVSKMVDSKKIRVALSCGQVIF--- 53
+L ++ +Q++ + +A K +LVA R + G F
Sbjct: 13 ALAANYRLIRQQVSPA-QVAGVVKADGYGLGAALVA----------RTLIDEGCRHFCVA 61
Query: 54 --AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVS-EIVSLFDVIETVSREKTASLLS 110
E A +R E DV G L ++ + V+ ++ + + S
Sbjct: 62 LLGE-----AAALVPHVRGEADV-FVLNGLLPGDEAECATLGAIPVLNSLDQIEL---WS 112
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
+ + R LP +Q +TG + G+ P + + ++V L+ +P
Sbjct: 113 AQARARGRKLPAMLQFDTGM--SRMGLSPEEIDRLLATPDVLDPIDVRFLISHLACADDP 170
>gi|254501211|ref|ZP_05113362.1| diaminopimelate decarboxylase [Labrenzia alexandrii DFL-11]
gi|222437282|gb|EEE43961.1| diaminopimelate decarboxylase [Labrenzia alexandrii DFL-11]
Length = 424
Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 16/102 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E LS K + V +++N TG K GI + ++
Sbjct: 124 VESEPELHQLSRVATKIGKTARVSMRINPDVDAKTHAKIATGKAENKFGIPWQRAREVYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIARECK 185
L V G+ M I + +P F L E+ + +
Sbjct: 184 TAASLPGLKVTGIDMHIGSQITELEPFDSAFARLGELITDLR 225
>gi|126641403|ref|YP_001084387.1| alanine racemase [Acinetobacter baumannii ATCC 17978]
Length = 409
Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 15/142 (10%)
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI--MPNQTKDFVIL 148
++ E + A+ +S + + + +N+G + ++G+ Q K+ +
Sbjct: 114 AHALNIEELLGNYDQATRISKWAEANNTTVHYSLALNSGG-MDRNGLEMSTAQGKEQAVA 172
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE---------CKLTKLSMGMTRDFEL 199
+ L ++G+M A+ + K L++ + +L++ F
Sbjct: 173 ITKLPNLKIDGIMT-HYAVEDEKYVRERLAQFNEQTAWLIKKAKLNRKELTLHTANSFAT 231
Query: 200 AIASGAT--SVRIGSGIFGERP 219
+ VR G+ I+G+ P
Sbjct: 232 VNVPESHLDMVRAGAIIYGDFP 253
>gi|152997590|ref|YP_001342425.1| diaminopimelate decarboxylase [Marinomonas sp. MWYL1]
gi|150838514|gb|ABR72490.1| diaminopimelate decarboxylase [Marinomonas sp. MWYL1]
Length = 417
Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 31/101 (30%), Gaps = 16/101 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V E L + + PV ++VN + K GI
Sbjct: 124 VESEAELYRLDKVAGEMGKLAPVSLRVNPDVDAKTHPYISTGLKENKFGIDIKDAVRIYK 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPH---FYLLSEIAREC 184
+ + LNV G+ C I + KP F L + E
Sbjct: 184 IAHELPNLNVMGVDCHIGSQLTELKPFLDTFDRLIGLVDEL 224
>gi|116493948|ref|YP_805682.1| amino acid racemase [Lactobacillus casei ATCC 334]
gi|116104098|gb|ABJ69240.1| Predicted amino acid racemase [Lactobacillus casei ATCC 334]
Length = 390
Score = 38.1 bits (88), Expect = 0.86, Method: Composition-based stats.
Identities = 12/110 (10%), Positives = 31/110 (28%), Gaps = 13/110 (11%)
Query: 77 RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI---- 132
F+ L + T+ + L+ + V ++V +
Sbjct: 111 HFLTRLLKYGTKYV--------TMYSLENTQALNEAAKEVGIKQKVLLKVVGNGDDIYPG 162
Query: 133 QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP-KPHFYLLSEIA 181
Q G + + + + + G+ P + N + F + +
Sbjct: 163 QTGGFTLAELDKQLKQLKTLSNIALVGITTFPAILYNESQEDFAATANVK 212
>gi|239813248|ref|YP_002942158.1| alanine racemase [Variovorax paradoxus S110]
gi|259710076|sp|C5CX88|ALR_VARPS RecName: Full=Alanine racemase
gi|239799825|gb|ACS16892.1| alanine racemase [Variovorax paradoxus S110]
Length = 366
Score = 38.1 bits (88), Expect = 0.87, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 7/134 (5%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
E+ S D+ TV ++ +L+ K + V++++N+G + G P +
Sbjct: 89 ELCSRLDLWHTVHCDEQIDMLA--AHKTLKPQRVFLKMNSGM--NRLGFAPERFGSAWTR 144
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--LTKLSMGMT-RDFELAIASGA 205
Q++ LM + + L R L + S+ + A +
Sbjct: 145 LNALPQVDEISLMTHFSDADGARGIAHQLEVFERATHDLLGERSIANSAATLRHARQTRG 204
Query: 206 TSVRIGSGIFGERP 219
VR G ++G P
Sbjct: 205 DWVRPGIVLYGSAP 218
>gi|269964928|ref|ZP_06179098.1| Diaminopimelate decarboxylase [Vibrio alginolyticus 40B]
gi|269830404|gb|EEZ84628.1| Diaminopimelate decarboxylase [Vibrio alginolyticus 40B]
Length = 222
Score = 38.1 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 12/73 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++ D
Sbjct: 125 VESEPELERLNKVAGELGVIAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPDVYK 184
Query: 148 LCRQKYQLNVEGL 160
+ LNV+G+
Sbjct: 185 FAQSLPNLNVQGI 197
>gi|254712683|ref|ZP_05174494.1| Alr, alanine racemase [Brucella ceti M644/93/1]
gi|254715753|ref|ZP_05177564.1| Alr, alanine racemase [Brucella ceti M13/05/1]
gi|261217513|ref|ZP_05931794.1| alanine racemase [Brucella ceti M13/05/1]
gi|260922602|gb|EEX89170.1| alanine racemase [Brucella ceti M13/05/1]
Length = 399
Score = 38.1 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 35/242 (14%), Positives = 73/242 (30%), Gaps = 54/242 (22%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + +I + AV K + + ++ A G F
Sbjct: 27 ALRHNYSAIATRIAPTRTA-----------AVVKADAYGLGASRVAPAFYEAGCRDFFVA 75
Query: 54 --AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS--LFDVIETVSREKTASLL 109
E + + D L + LQ + + V+ ++ + + + L
Sbjct: 76 HLGE-------AVALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAAL 128
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI------ 163
+ + LP +Q +TG + G+ + + +++++ I
Sbjct: 129 ---ATRLGKKLPALLQFDTGM--SRLGLSAKEFDRLLENVTLLSRIDIK--FAISHLANG 181
Query: 164 --PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT----SVRIGSGIFGE 217
P N + + + +AR KL F G T R G ++G
Sbjct: 182 DEPGNAANARQLAKMTALLARLPKLPAALANSGGTFL-----GKTYYFDLARPGIALYGI 236
Query: 218 RP 219
P
Sbjct: 237 DP 238
>gi|148557977|ref|YP_001257844.1| alanine racemase [Brucella ovis ATCC 25840]
gi|166919547|sp|A5VVI9|ALR_BRUO2 RecName: Full=Alanine racemase
gi|148369262|gb|ABQ62134.1| alanine racemase [Brucella ovis ATCC 25840]
Length = 396
Score = 38.1 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 35/242 (14%), Positives = 73/242 (30%), Gaps = 54/242 (22%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + +I + AV K + + ++ A G F
Sbjct: 24 ALRHNYSAIATRIAPTRTA-----------AVVKADAYGLGASRVAPAFYEAGCRDFFVA 72
Query: 54 --AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS--LFDVIETVSREKTASLL 109
E + + D L + LQ + + V+ ++ + + + L
Sbjct: 73 HLGE-------AVALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAAL 125
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI------ 163
+ + LP +Q +TG + G+ + + +++++ I
Sbjct: 126 ---ATRLGKKLPALLQFDTGM--SRLGLSAKEFDRLLENVTLLSRIDIK--FAISHLANG 178
Query: 164 --PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT----SVRIGSGIFGE 217
P N + + + +AR KL F G T R G ++G
Sbjct: 179 DEPGNAANARQLAKMTALLARLPKLPAALANSGGTFL-----GKTYYFDLARPGIALYGI 233
Query: 218 RP 219
P
Sbjct: 234 DP 235
>gi|229492390|ref|ZP_04386197.1| dibenzothiophene desulfurization enzyme A [Rhodococcus erythropolis
SK121]
gi|229320799|gb|EEN86613.1| dibenzothiophene desulfurization enzyme A [Rhodococcus erythropolis
SK121]
Length = 434
Score = 38.1 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAV 33
L L+ ++ I A A R DSV LVA
Sbjct: 241 LEEDLRAKRKAIRGYAEEAGRDPDSVRLVAA 271
>gi|163803627|ref|ZP_02197492.1| diaminopimelate decarboxylase [Vibrio sp. AND4]
gi|159172575|gb|EDP57435.1| diaminopimelate decarboxylase [Vibrio sp. AND4]
Length = 417
Score = 38.1 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 13/86 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++
Sbjct: 125 VESEPELERLNKVAGELGVVAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPAVYQ 184
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKP 172
+ LNV+G+ C I + +P
Sbjct: 185 FAQSLPNLNVQGIDCHIGSQLTEIEP 210
>gi|121610311|ref|YP_998118.1| alanine racemase domain-containing protein [Verminephrobacter
eiseniae EF01-2]
gi|121554951|gb|ABM59100.1| D-3-hydroxyaspartate aldolase [Verminephrobacter eiseniae EF01-2]
Length = 372
Score = 38.1 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 24/111 (21%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKYQLNVEG 159
+ S + L ++++ G + G++P + L G
Sbjct: 117 DALEQVDAASKAAQEFDVELGALVEIDLGMR--RCGVVPGDAAAALAKYIEAAPGLKFLG 174
Query: 160 LMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRI 210
L + + + D E AI + AT+VR+
Sbjct: 175 LQAYQGKAQHVREY---------------------ADREKAIEAAATAVRL 204
>gi|23500650|ref|NP_700090.1| alanine racemase [Brucella suis 1330]
gi|161620975|ref|YP_001594861.1| alanine racemase [Brucella canis ATCC 23365]
gi|31076598|sp|Q8FVC1|ALR_BRUSU RecName: Full=Alanine racemase
gi|189027529|sp|A9MCK3|ALR_BRUC2 RecName: Full=Alanine racemase
gi|23464295|gb|AAN34095.1| alanine racemase [Brucella suis 1330]
gi|161337786|gb|ABX64090.1| alanine racemase [Brucella canis ATCC 23365]
Length = 396
Score = 38.1 bits (88), Expect = 0.89, Method: Composition-based stats.
Identities = 35/242 (14%), Positives = 73/242 (30%), Gaps = 54/242 (22%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + +I + AV K + + ++ A G F
Sbjct: 24 ALRHNYSAIATRIAPTRTA-----------AVVKADAYGLGASRVAPAFYEAGCRDFFVA 72
Query: 54 --AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS--LFDVIETVSREKTASLL 109
E + + D L + LQ + + V+ ++ + + + L
Sbjct: 73 HLGE-------AVALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAAL 125
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI------ 163
+ + LP +Q +TG + G+ + + +++++ I
Sbjct: 126 ---ATRLGKKLPALLQFDTGM--SRLGLSAKEFDRLLENVTLLSRIDIK--FAISHLANG 178
Query: 164 --PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT----SVRIGSGIFGE 217
P N + + + +AR KL F G T R G ++G
Sbjct: 179 DEPGNAANARQLAKMTALLARLPKLPAALANSGGTFL-----GKTYYFDLARPGIALYGI 233
Query: 218 RP 219
P
Sbjct: 234 DP 235
>gi|303242638|ref|ZP_07329113.1| alanine racemase [Acetivibrio cellulolyticus CD2]
gi|302589846|gb|EFL59619.1| alanine racemase [Acetivibrio cellulolyticus CD2]
Length = 389
Score = 38.1 bits (88), Expect = 0.90, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 21/140 (15%)
Query: 95 DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKY 153
DV +TV A LS ++ + + ++I++++G + G MP V+ +
Sbjct: 100 DVTQTVFSHDLAEALSEAAVRLDKNIKIHIKIDSGM--TRVGFMPGYSAVKNVVKISKLP 157
Query: 154 QLNVEGLMC-IPPAMGNPKPH----FYLLSEIARECK-------LTKL--SMGMTRDFEL 199
++ +EGL + + + F I E + + S G+ F
Sbjct: 158 KIIIEGLFTHFASSDEIDRSYTYMQFERFMSIVSELNRIGIYIPVKHVCNSAGVIE-FP- 215
Query: 200 AIASGATSVRIGSGIFGERP 219
VR G ++G P
Sbjct: 216 --EMHLNMVRPGIALYGMYP 233
>gi|227536835|ref|ZP_03966884.1| diaminopimelate decarboxylase [Sphingobacterium spiritivorum ATCC
33300]
gi|227243262|gb|EEI93277.1| diaminopimelate decarboxylase [Sphingobacterium spiritivorum ATCC
33300]
Length = 355
Score = 38.1 bits (88), Expect = 0.90, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V + +++ + + V +++N TG + K GI ++ +
Sbjct: 81 VESIEEMEVINALAGETGQIANVSLRINPNVDAQTHHYITTGLDENKFGIPNSELEKSAA 140
Query: 148 LCRQKYQLNVEGL 160
+ R+ LN+ GL
Sbjct: 141 ILRESKHLNLVGL 153
>gi|170016583|ref|YP_001727502.1| alanine racemase [Leuconostoc citreum KM20]
gi|169803440|gb|ACA82058.1| Alanine racemase [Leuconostoc citreum KM20]
Length = 376
Score = 38.1 bits (88), Expect = 0.90, Method: Composition-based stats.
Identities = 39/236 (16%), Positives = 74/236 (31%), Gaps = 41/236 (17%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIR-VALSCGQVIF-----AEN 56
L ++ ++ A L+AV K + + G F E
Sbjct: 19 LGAIQENAQSIMAHAGAK----RLIAVVKADGYGHGATPVANALYEIGVRDFAVATIGE- 73
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV--SLFDVIETVSREKTASLLSLEMI 114
K D ++ +G V +V L IE++ A L+ I
Sbjct: 74 -----GIKLRQELAYQDYRIVLLGVQDIAHVDVMVKYRLSPAIESIDWLSVA----LQAI 124
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTK-DFVILCRQKYQLNVEGLMCIPPAMGNPKPH 173
+ L V + V+TG + G + + +L + G+ +
Sbjct: 125 PEGATLDVELAVDTGM--GRMGAHSKEAVYSVYRYIKNNDKLELGGVFTHFATADDSNIG 182
Query: 174 FYLLSEIARECKLTKLSMGMTRDFELAIASGATS----------VRIGSGIFGERP 219
+Y + A+ + G+ R + SG+ +R+GS ++G P
Sbjct: 183 YY--KQQAQRFNDWVTAAGIPRQYWHLANSGSALWHTQEIDTRTIRVGSVLYGYNP 236
>gi|313498322|gb|ADR59688.1| Alr [Pseudomonas putida BIRD-1]
Length = 380
Score = 38.1 bits (88), Expect = 0.91, Method: Composition-based stats.
Identities = 25/157 (15%), Positives = 57/157 (36%), Gaps = 18/157 (11%)
Query: 78 FIGSLQSNKVSEIVSL-----FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
F G L +++ + L +D+ E V + A + + L +++ +N+ +
Sbjct: 85 FTGQLVRVRLASLSELEDGLQYDMEELVGSAEFARQADAIAARHGKTLRIHMALNSSG-M 143
Query: 133 QKSGIMPNQT--KDFVILCRQKYQLNVEGLMC--IPPAMGNPKPHFYLLSE----IAREC 184
++G+ + + + L + LM + + +E + +
Sbjct: 144 SRNGVEMATWSGRGEALQITDQKHLKLVALMTHFAVEDKDDVRKGLAAFNEQTDWLIKHA 203
Query: 185 KLT--KLSMGMTRDF--ELAIASGATSVRIGSGIFGE 217
KL KL++ F + VR G +FG+
Sbjct: 204 KLDRSKLTLHAANSFATLEVPEARLDMVRTGGALFGD 240
>gi|113968735|ref|YP_732528.1| diaminopimelate decarboxylase [Shewanella sp. MR-4]
gi|113883419|gb|ABI37471.1| diaminopimelate decarboxylase [Shewanella sp. MR-4]
Length = 414
Score = 38.1 bits (88), Expect = 0.92, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 20/104 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L+ + + PV ++VN + K GI ++ +
Sbjct: 124 VESSAELEQLNQVAGRLGKIAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMDEAEVVFA 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE 183
L V+G+ C I P + L+ +A +
Sbjct: 184 RAHALPHLQVKGVDCHIGSQLTEIQPFLDAMDRMLALIDRLAEQ 227
>gi|169630818|ref|YP_001704467.1| alanine racemase [Mycobacterium abscessus ATCC 19977]
gi|169242785|emb|CAM63813.1| Alanine racemase [Mycobacterium abscessus]
Length = 405
Score = 38.1 bits (88), Expect = 0.92, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 22/148 (14%)
Query: 91 VSLFDVIET-----VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN---QT 142
+ VS L R I+V+TG + ++G+
Sbjct: 105 ADYAAALHADVEVAVSSLGQLGELLAAARSTGRQAITSIKVDTG--LNRNGVPAGYTRDL 162
Query: 143 KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIA 202
+ + + + + + G+M P H + +I R + +L+ G +ELA
Sbjct: 163 FEALAKAQAEESIRLRGIMSHFAYADQPG-HPTVDMQIGRFNEALELARGFGLRYELAHL 221
Query: 203 SGA-----------TSVRIGSGIFGERP 219
S + VR G ++G P
Sbjct: 222 SNSAATLTRPDARYDMVRPGIAVYGINP 249
>gi|300773320|ref|ZP_07083189.1| diaminopimelate decarboxylase [Sphingobacterium spiritivorum ATCC
33861]
gi|300759491|gb|EFK56318.1| diaminopimelate decarboxylase [Sphingobacterium spiritivorum ATCC
33861]
Length = 386
Score = 38.1 bits (88), Expect = 0.93, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V + +++ + + V +++N TG + K GI ++ +
Sbjct: 112 VESIEEMEVINALAGETGQIANVSLRINPNVDAQTHHYITTGLDENKFGIPNSELEKSAA 171
Query: 148 LCRQKYQLNVEGL 160
+ R+ LN+ GL
Sbjct: 172 ILRESKHLNLVGL 184
>gi|170024003|ref|YP_001720508.1| alanine racemase [Yersinia pseudotuberculosis YPIII]
gi|169750537|gb|ACA68055.1| alanine racemase [Yersinia pseudotuberculosis YPIII]
Length = 409
Score = 38.1 bits (88), Expect = 0.95, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 54/142 (38%), Gaps = 15/142 (10%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF--VILCRQ 151
+DV E + + A L+ + L +++ +N+ + ++G+ ++ +
Sbjct: 136 YDVEELIGDKTVAEQLNNIAKLNGKVLRIHLALNSAG-MSRNGLEVSKARGLNDAKTIVG 194
Query: 152 KYQLNVEGLMCIPPAMG--NPKPHFYLLSEIARE------CKLTKLSMGMTRDFE-LAIA 202
L + G+M P K + A++ K K+ + + F LA+
Sbjct: 195 LKNLTIVGIMSHYPVEDASEIKADLARFQQQAKDVIAVTGLKREKIKLHVANTFATLAVP 254
Query: 203 SGA--TSVRIGSGIFGERPCQT 222
+ VR+G +G+ T
Sbjct: 255 D-SWLDMVRVGGVFYGDTIAST 275
>gi|269139319|ref|YP_003296020.1| putative diaminopimelate decarboxylase [Edwardsiella tarda EIB202]
gi|267984980|gb|ACY84809.1| putative diaminopimelate decarboxylase [Edwardsiella tarda EIB202]
gi|304559225|gb|ADM41889.1| Vibrioferrin decarboxylase protein PvsE [Edwardsiella tarda FL6-60]
Length = 390
Score = 38.1 bits (88), Expect = 0.96, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 13/79 (16%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNT------------GYEIQKSGIMPNQ 141
D + V L+ ++ + LP+ +++N G + G+ P
Sbjct: 109 VDALH-VESLGELRRLAALAERRRQTLPLLLRMNIPLPGGAETPLMMGGKPTPFGLDPAD 167
Query: 142 TKDFVILCRQKYQLNVEGL 160
+ L L + G
Sbjct: 168 LAPALRLIGDARWLRLRGF 186
>gi|261250031|ref|ZP_05942608.1| diaminopimelate decarboxylase [Vibrio orientalis CIP 102891]
gi|260939535|gb|EEX95520.1| diaminopimelate decarboxylase [Vibrio orientalis CIP 102891]
Length = 417
Score = 38.1 bits (88), Expect = 0.96, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++
Sbjct: 125 VESEPELERLNKVAGELGVKAPISLRINPDVDANTHPYISTGLRDNKFGIAFDRAPAVYK 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
+ L+V G L I P + L+ ++ A+ + L +G
Sbjct: 185 FAQSLDNLDVRGIDCHIGSQLTDIEPFIDATDRLLALIDDLKAQGVTIEHLDVG 238
>gi|260167680|ref|ZP_05754491.1| Alr, alanine racemase [Brucella sp. F5/99]
gi|261757116|ref|ZP_06000825.1| alanine racemase [Brucella sp. F5/99]
gi|261737100|gb|EEY25096.1| alanine racemase [Brucella sp. F5/99]
Length = 399
Score = 38.1 bits (88), Expect = 0.96, Method: Composition-based stats.
Identities = 33/240 (13%), Positives = 70/240 (29%), Gaps = 50/240 (20%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + +I + AV K + + ++ A G F
Sbjct: 27 ALRHNYSAIATRIAPTRTA-----------AVVKADAYGLGASRVAPAFYEAGCRDFFVA 75
Query: 54 --AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
E + + D L + LQ + ++ ++ + +
Sbjct: 76 HLGE-------AVALKPFLKPDATLYVLNGLQPGTEAACARE-GILPVLNSLEQVENWAA 127
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI-------- 163
+ + LP +Q +TG + G+ + + +++++ I
Sbjct: 128 LATRLGKKLPALLQFDTGM--SRLGLSAKEFDRLLENVTLLSRIDIK--FAISHLANGDE 183
Query: 164 PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT----SVRIGSGIFGERP 219
P N + + + +AR KL F G T R G ++G P
Sbjct: 184 PGNAANARQLAKMTALLARLPKLPAALANSGGTFL-----GKTYYFDLARPGIALYGIDP 238
>gi|225629379|ref|ZP_03787412.1| alanine racemase [Brucella ceti str. Cudo]
gi|254705613|ref|ZP_05167441.1| Alr, alanine racemase [Brucella pinnipedialis M163/99/10]
gi|256029226|ref|ZP_05442840.1| Alr, alanine racemase [Brucella pinnipedialis M292/94/1]
gi|261313023|ref|ZP_05952220.1| alanine racemase [Brucella pinnipedialis M163/99/10]
gi|265986214|ref|ZP_06098771.1| alanine racemase [Brucella pinnipedialis M292/94/1]
gi|225615875|gb|EEH12924.1| alanine racemase [Brucella ceti str. Cudo]
gi|261302049|gb|EEY05546.1| alanine racemase [Brucella pinnipedialis M163/99/10]
gi|264658411|gb|EEZ28672.1| alanine racemase [Brucella pinnipedialis M292/94/1]
Length = 399
Score = 38.1 bits (88), Expect = 0.96, Method: Composition-based stats.
Identities = 33/240 (13%), Positives = 70/240 (29%), Gaps = 50/240 (20%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + +I + AV K + + ++ A G F
Sbjct: 27 ALRHNYSAIATRIAPTRTA-----------AVVKADAYGLGASRVAPAFYEAGCRDFFVA 75
Query: 54 --AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
E + + D L + LQ + ++ ++ + +
Sbjct: 76 HLGE-------AVALKPFLKPDATLYVLNGLQPGTEAACARE-GILPVLNSLEQVENWAA 127
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI-------- 163
+ + LP +Q +TG + G+ + + +++++ I
Sbjct: 128 LATRLGKKLPALLQFDTGM--SRLGLSAKEFDRLLENVTLLSRIDIK--FAISHLANGDE 183
Query: 164 PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT----SVRIGSGIFGERP 219
P N + + + +AR KL F G T R G ++G P
Sbjct: 184 PGNAANARQLAKMTALLARLPKLPAALANSGGTFL-----GKTYYFDLARPGIALYGIDP 238
>gi|169245594|gb|ACA50843.1| LysA [Agrobacterium tumefaciens]
gi|169245604|gb|ACA50848.1| LysA [Agrobacterium tumefaciens]
gi|169245616|gb|ACA50854.1| LysA [Agrobacterium tumefaciens]
gi|169245620|gb|ACA50856.1| LysA [Agrobacterium tumefaciens]
gi|169245624|gb|ACA50858.1| LysA [Agrobacterium tumefaciens]
Length = 180
Score = 38.1 bits (88), Expect = 0.96, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGN---PKPHFYLLSEIA 181
++TG + K GI + + + V G+ M I + + F LL E+
Sbjct: 17 ISTGKKENKFGISYERARAVYAHAATLPGIEVTGIDMHIGSQITELQPFEDAFRLLRELV 76
Query: 182 RECKLT 187
+
Sbjct: 77 ESLRAD 82
>gi|87303422|ref|ZP_01086210.1| diaminopimelate decarboxylase [Synechococcus sp. WH 5701]
gi|87282070|gb|EAQ74032.1| diaminopimelate decarboxylase [Synechococcus sp. WH 5701]
Length = 474
Score = 38.1 bits (88), Expect = 0.96, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 12/73 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + L+ R +P+ ++ G E K G P+Q + +
Sbjct: 167 VDNDHDLERLAEIAPAAGRVVPLMLRFTPGIECHTHEYIRTGHLDSKFGFDPDQLESVLQ 226
Query: 148 LCRQKYQLNVEGL 160
+ GL
Sbjct: 227 RLAGCSWARLTGL 239
>gi|300785911|ref|YP_003766202.1| diaminopimelate decarboxylase [Amycolatopsis mediterranei U32]
gi|299795425|gb|ADJ45800.1| diaminopimelate decarboxylase [Amycolatopsis mediterranei U32]
Length = 431
Score = 38.1 bits (88), Expect = 0.97, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 22/111 (19%)
Query: 96 VIETVSREKTASLLSLEMIKQSRFLPVYIQVN-----------TGYEIQKSGIMPNQTKD 144
V E+ K L+ E ++R V ++VN G + ++ GI Q
Sbjct: 116 VCESFGELKILDELARERGIEAR---VALRVNPSFAVKGSGLTMGGKPRQFGIDEEQLLA 172
Query: 145 FVILCRQKYQLNVEGL---MCI-----PPAMGNPKPHFYLLSEIARECKLT 187
L + L + G+ M P + N + F L ++R
Sbjct: 173 ATDLVDRHPNLRLMGVQVYMGTRILDEEPIVENTRRIFELAERVSRRLGFP 223
>gi|297787806|pdb|3N2B|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
gi|297787807|pdb|3N2B|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
gi|297787808|pdb|3N2B|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae.
gi|297787809|pdb|3N2B|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of
Diaminopimelate Decarboxylase (Lysa) From Vibrio
Cholerae
Length = 441
Score = 38.1 bits (88), Expect = 0.97, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++
Sbjct: 149 VESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVYR 208
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
L L+V G L + P + L+ + A + L +G
Sbjct: 209 LAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVG 262
>gi|296445377|ref|ZP_06887335.1| diaminopimelate decarboxylase [Methylosinus trichosporium OB3b]
gi|296257138|gb|EFH04207.1| diaminopimelate decarboxylase [Methylosinus trichosporium OB3b]
Length = 422
Score = 38.1 bits (88), Expect = 0.97, Method: Composition-based stats.
Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 63/186 (33%)
Query: 18 AILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLR 77
A A P ++ V K +++I +A+ G F N
Sbjct: 89 ARAAGVPASKITFSGVGKT--AQEIALAIDEGIFCF--N--------------------- 123
Query: 78 FIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------ 131
V E ++ + R + ++VN +
Sbjct: 124 ----------------------VESEPELEAIAAIAAAKGRRAHISLRVNPDVDAKTHAK 161
Query: 132 ------IQKSGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIA 181
K G+ ++ +D + L++ G+ M I + + +P F LL+E+
Sbjct: 162 ISTGLAENKFGVPLSRARDIYAQAARLPGLDIVGVDMHIGSQITDLRPFDAAFSLLAELV 221
Query: 182 RECKLT 187
+
Sbjct: 222 VGLRAD 227
>gi|260424611|ref|ZP_05732650.2| alanine racemase [Dialister invisus DSM 15470]
gi|260402530|gb|EEW96077.1| alanine racemase [Dialister invisus DSM 15470]
Length = 361
Score = 38.1 bits (88), Expect = 0.97, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 44/139 (31%), Gaps = 18/139 (12%)
Query: 96 VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL 155
+I V L + + + V + ++TG + G F+ ++ L
Sbjct: 91 LILPVDDTTNLEALEIAASTLKKMVEVMLPIDTGM--NRIGTHAKDLSAFLEKLKRYPHL 148
Query: 156 NVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA---------- 205
++ GL A + K ++A + M L I++ +
Sbjct: 149 HIHGLFT-HLATADAKNKSKTYKQLAE---FEEALSAMPSLENLVISAASSAGVVDIPES 204
Query: 206 --TSVRIGSGIFGERPCQT 222
VR G +G P T
Sbjct: 205 WYNLVRPGIIQYGPSPSNT 223
>gi|254703242|ref|ZP_05165070.1| Alr, alanine racemase [Brucella suis bv. 3 str. 686]
gi|260567824|ref|ZP_05838293.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|261753873|ref|ZP_05997582.1| alanine racemase [Brucella suis bv. 3 str. 686]
gi|260154489|gb|EEW89570.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
gi|261743626|gb|EEY31552.1| alanine racemase [Brucella suis bv. 3 str. 686]
Length = 399
Score = 38.1 bits (88), Expect = 0.97, Method: Composition-based stats.
Identities = 33/240 (13%), Positives = 70/240 (29%), Gaps = 50/240 (20%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + +I + AV K + + ++ A G F
Sbjct: 27 ALRHNYSAIATRIAPTRTA-----------AVVKADAYGLGASRVAPAFYEAGCRDFFVA 75
Query: 54 --AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
E + + D L + LQ + ++ ++ + +
Sbjct: 76 HLGE-------AVALKPFLKPDATLYVLNGLQPGTEAACARE-GILPVLNSLEQVENWAA 127
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI-------- 163
+ + LP +Q +TG + G+ + + +++++ I
Sbjct: 128 LATRLGKKLPALLQFDTGM--SRLGLSAKEFDRLLENVTLLSRIDIK--FAISHLANGDE 183
Query: 164 PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT----SVRIGSGIFGERP 219
P N + + + +AR KL F G T R G ++G P
Sbjct: 184 PGNAANARQLAKMTALLARLPKLPAALANSGGTFL-----GKTYYFDLARPGIALYGIDP 238
>gi|88604175|ref|YP_504353.1| diaminopimelate decarboxylase [Methanospirillum hungatei JF-1]
gi|88189637|gb|ABD42634.1| diaminopimelate decarboxylase [Methanospirillum hungatei JF-1]
Length = 430
Score = 38.1 bits (88), Expect = 0.98, Method: Composition-based stats.
Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 14/95 (14%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFV 146
++ + L + + + V +VN ++ K GI + D
Sbjct: 127 SLDSLDELAQLDRIAGEAGKVVEVSFRVNPAIDVPTHPKIATGLATSKFGIPAAEITDAY 186
Query: 147 ILCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEI 180
+ G+ C I + + +P F +++
Sbjct: 187 AAALACKNVVPVGIHCHIGSQILDVEP-FAKEAQV 220
>gi|262395354|ref|YP_003287207.1| alanine racemase [Vibrio sp. Ex25]
gi|262338948|gb|ACY52742.1| alanine racemase [Vibrio sp. Ex25]
Length = 409
Score = 38.1 bits (88), Expect = 0.98, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 59/161 (36%), Gaps = 20/161 (12%)
Query: 78 FIGSLQSNKVSEIVSLFDVI-----ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
F G L + ++I + I E + + A LS K + + V++ +N G +
Sbjct: 115 FKGQLMRVRSADIGEIEAAIDLNIEELIGTAEQAKALSKLAEKADKEIKVHLALNDGG-M 173
Query: 133 QKSGIMPN--QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLS 190
++G+ K + Q+ +N+ G+M P N LS
Sbjct: 174 GRNGVDMTTKAGKKEALEIAQQDGVNIVGIMTHFPNY-NADEVRQKLSSFKDSSAWLIKE 232
Query: 191 MGMT-RDFELAIASGAT----------SVRIGSGIFGERPC 220
G+ D L +A+ T VR G ++G+ P
Sbjct: 233 AGLKREDILLHVANSYTALNVSEAQLDMVRPGGVLYGDLPT 273
>gi|162455533|ref|YP_001617900.1| hypothetical protein sce7251 [Sorangium cellulosum 'So ce 56']
gi|226711060|sp|A9ESU7|ALR_SORC5 RecName: Full=Alanine racemase
gi|161166115|emb|CAN97420.1| alr [Sorangium cellulosum 'So ce 56']
Length = 379
Score = 38.1 bits (88), Expect = 0.99, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 21/123 (17%)
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI-----PPA 166
+ ++ R V+++V+TG + G ++ + + + ++ ++GLM
Sbjct: 120 RLEQRGRV-GVHLKVDTGM--GRLGAASSEIEAVLATLAKHPEVKLDGLMTHLACADADD 176
Query: 167 MGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA---------TSVRIGSGIFGE 217
+G L EI + K S G+T A S A VR G +FG
Sbjct: 177 LGVTIEQMRLFGEIEQRAK----SFGLTPRVRHASNSAAMLRLPAALLDIVRPGVALFGI 232
Query: 218 RPC 220
PC
Sbjct: 233 SPC 235
>gi|1373382|gb|AAB17466.1| alanine racemase [Treponema pallidum]
Length = 178
Score = 38.1 bits (88), Expect = 0.99, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 9/146 (6%)
Query: 40 KKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-DVIE 98
+ ALSCG FA +QEA + + + L + EI SL +
Sbjct: 23 DVAQAALSCGVHSFAVACVQEASQLRAAGVRAPILC------LSTPTAEEISSLIEHRVH 76
Query: 99 TVSREKTASLLSLEMIKQSRFLP--VYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156
TV E+ L ++QS + V + + G P++ V + L+
Sbjct: 77 TVISERAHIALIARALRQSADTGATCGVHVKIDTGMGRIGCAPDEACALVQMVCATPGLH 136
Query: 157 VEGLMCIPPAMGNPKPHFYLLSEIAR 182
+EG+ + + +E+ R
Sbjct: 137 LEGVCTHFSVADSVRAEDLQYTEMQR 162
>gi|304412536|ref|ZP_07394142.1| diaminopimelate decarboxylase [Shewanella baltica OS183]
gi|307307195|ref|ZP_07586933.1| diaminopimelate decarboxylase [Shewanella baltica BA175]
gi|304349178|gb|EFM13590.1| diaminopimelate decarboxylase [Shewanella baltica OS183]
gi|306910434|gb|EFN40865.1| diaminopimelate decarboxylase [Shewanella baltica BA175]
Length = 414
Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 20/104 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L+L + + PV +++N + K GI ++ +
Sbjct: 124 VESSAELEQLNLVAGRLGKVAPVSLRINPDVDAGTHPYISTGLKENKFGIAMDEAEIVFA 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE 183
LNV+G+ C I P + L+ +A +
Sbjct: 184 RAHALPHLNVKGVDCHIGSQLTEIKPFLDAMDRMLALIDRLAEQ 227
>gi|170719432|ref|YP_001747120.1| diaminopimelate decarboxylase [Pseudomonas putida W619]
gi|169757435|gb|ACA70751.1| diaminopimelate decarboxylase [Pseudomonas putida W619]
Length = 415
Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + + + PV ++VN + K GI + +
Sbjct: 124 VESTDELERLQVVAAEMGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAIADAEAIYV 183
Query: 148 LCRQKYQLNVEGLMC 162
Q L V G+ C
Sbjct: 184 RAAQLPNLEVVGVDC 198
>gi|158321297|ref|YP_001513804.1| alanine racemase [Alkaliphilus oremlandii OhILAs]
gi|158141496|gb|ABW19808.1| alanine racemase [Alkaliphilus oremlandii OhILAs]
Length = 390
Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 45/138 (32%), Gaps = 29/138 (21%)
Query: 98 ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKYQLN 156
+TV A S ++++ + ++++++TG + G P + + L
Sbjct: 105 QTVYSYDQALEFSNAAKQKNQKMTLHLKIDTGM--SRLGFQPNEEAIHDIKKIFNLPNLT 162
Query: 157 VEGLMCIPPAMGNPKP-----HFYLLSEIARECKLTKLSMGMTRDFELAIASGAT----- 206
+EG+ A + F+ + ++ + + I +
Sbjct: 163 IEGIFTHFAAADDRDKAYTYQQFHTFMDFVKKLE--------QEGCPIPIKHVSNSAAIM 214
Query: 207 --------SVRIGSGIFG 216
VR G ++G
Sbjct: 215 DLPEMNLDMVRPGIILYG 232
>gi|317405225|gb|EFV85564.1| pyridoxal phosphate binding aldolase [Achromobacter xylosoxidans
C54]
Length = 382
Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 19/133 (14%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN-VE 158
V + A ++ +++ +P I+++ ++G+ P Q + + R + +
Sbjct: 112 VDSVEAAQAVAARALEEGAAIPALIEIDCDG--HRAGVQPGQAGQLLEIARTLHAAGCLR 169
Query: 159 GLMC-------------IPPAMGNPKPHFYLLSEIARECKL--TKLSMGMTRDFELAI-A 202
G+M I + +E R L +S+G T A
Sbjct: 170 GVMTHAGESYGCRSVEAIADMAEQERLAAVGCAETIRAAGLPCPVVSVGSTPTAHFARNL 229
Query: 203 SGATSVRIGSGIF 215
G T VR G +F
Sbjct: 230 EGVTEVRAGVYVF 242
>gi|256157422|ref|ZP_05455340.1| Alr, alanine racemase [Brucella ceti M490/95/1]
gi|256253600|ref|ZP_05459136.1| Alr, alanine racemase [Brucella ceti B1/94]
gi|261220737|ref|ZP_05935018.1| alanine racemase [Brucella ceti B1/94]
gi|265995910|ref|ZP_06108467.1| alanine racemase [Brucella ceti M490/95/1]
gi|260919321|gb|EEX85974.1| alanine racemase [Brucella ceti B1/94]
gi|262550207|gb|EEZ06368.1| alanine racemase [Brucella ceti M490/95/1]
Length = 399
Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 33/240 (13%), Positives = 70/240 (29%), Gaps = 50/240 (20%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + +I + AV K + + ++ A G F
Sbjct: 27 ALRHNYSAIATRIAPTRTA-----------AVVKADAYGLGASRVAPAFYEAGCRDFFVA 75
Query: 54 --AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
E + + D L + LQ + ++ ++ + +
Sbjct: 76 HLGE-------AVALKPFLKPDATLYVLNGLQPGTEAACARE-GILPVLNSLEQVENWAA 127
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI-------- 163
+ + LP +Q +TG + G+ + + +++++ I
Sbjct: 128 LATRLGKKLPALLQFDTGM--SRLGLSAKEFDRLLENVTLLSRIDIK--FAISHLANGDE 183
Query: 164 PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT----SVRIGSGIFGERP 219
P N + + + +AR KL F G T R G ++G P
Sbjct: 184 PGNAANARQLAKMTALLARLPKLPAALANSGGTFL-----GKTYYFDLARPGIALYGIDP 238
>gi|220919297|ref|YP_002494601.1| diaminopimelate decarboxylase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219957151|gb|ACL67535.1| diaminopimelate decarboxylase [Anaeromyxobacter dehalogenans 2CP-1]
Length = 427
Score = 38.1 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 16/100 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V + +S+ + PV ++VN + K G+ ++ +
Sbjct: 124 VESAPELARISIVARRMGLRAPVALRVNPDVDPKTHPYISTGLSENKFGVSVDEARRLYA 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIARECKL 186
L Q L V G+ C I + +P L IAR L
Sbjct: 184 LAAQDPALEVRGVACHIGSQITTVRPF---LDAIARVLSL 220
>gi|114326793|ref|YP_743950.1| diaminopimelate decarboxylase [Granulibacter bethesdensis CGDNIH1]
gi|114314967|gb|ABI61027.1| diaminopimelate decarboxylase [Granulibacter bethesdensis CGDNIH1]
Length = 448
Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 24/95 (25%), Gaps = 13/95 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + +LS R + ++VN + K GI
Sbjct: 149 VESAEELEMLSAIACGMGRTARIALRVNPDVDAGTHPKITTGLADNKFGIQAGDVPALYA 208
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIA 181
+ GL M I + P +A
Sbjct: 209 RAASLPGIEPVGLAMHIGSQINVMTPFLAAFRRMA 243
>gi|307130373|ref|YP_003882389.1| diaminopimelate decarboxylase [Dickeya dadantii 3937]
gi|306527902|gb|ADM97832.1| Diaminopimelate decarboxylase [Dickeya dadantii 3937]
Length = 411
Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 21/79 (26%), Gaps = 13/79 (16%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQ 141
+ + V + L + PV+I+VN G+
Sbjct: 113 VEAVH-VESRHEIARLQQRARQHGVVQPVFIRVNPELASSLTSKLAMAGTPTPFGMDEAD 171
Query: 142 TKDFVILCRQKYQLNVEGL 160
D V L ++G
Sbjct: 172 LADAVRDVDNASHLQLKGF 190
>gi|320006754|gb|ADW01604.1| diaminopimelate decarboxylase [Streptomyces flavogriseus ATCC
33331]
Length = 449
Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 15/96 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMP--NQTKDF 145
+ L+ + + R V I++N TG E K G+
Sbjct: 130 IDCLDEIDLIDRQAREHGRVQDVDIRLNLGIDIHTDPKYTTGDEASKFGLPVRRGDAASA 189
Query: 146 VILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEI 180
V + L + GL + + + K H L+E+
Sbjct: 190 VARVLTRDHLRLRGLHFHLGAQVLDTKYHRQALNEV 225
>gi|16118733|gb|AAL14568.1|AF416740_3 LysA [Erwinia chrysanthemi]
Length = 411
Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 21/79 (26%), Gaps = 13/79 (16%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQ 141
+ + V + L + PV+I+VN G+
Sbjct: 113 VEAVH-VESRHEIARLQQRARQHGVVQPVFIRVNPELASSLTSKLAMAGTPTPFGMDEAD 171
Query: 142 TKDFVILCRQKYQLNVEGL 160
D V L ++G
Sbjct: 172 LADAVRDVDNASHLQLKGF 190
>gi|56962451|ref|YP_174177.1| hypothetical protein ABC0677 [Bacillus clausii KSM-K16]
gi|56908689|dbj|BAD63216.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 386
Score = 37.7 bits (87), Expect = 1.0, Method: Composition-based stats.
Identities = 9/70 (12%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE----IQKSGIMPNQTKDFVILCRQKYQ 154
T+ + A L+ ++ V ++V + + Q G + + +
Sbjct: 126 TLFSLERAKQLNEAAVQAGVVQDVIVRVISKGDCVFPGQYGGFLLEELPAAIKELTALTG 185
Query: 155 LNVEGLMCIP 164
+ + G+ P
Sbjct: 186 IRLIGVTSFP 195
>gi|222081869|ref|YP_002541234.1| alanine racemase [Agrobacterium radiobacter K84]
gi|221726548|gb|ACM29637.1| alanine racemase [Agrobacterium radiobacter K84]
Length = 377
Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 48/156 (30%), Gaps = 21/156 (13%)
Query: 39 SKKIRVA-LSCGQVIF-----AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS 92
+ ++ A G F E +K P E D ++ + LQ
Sbjct: 59 ADRVAPALYHSGCRDFFVAQFGE------AEKLRP-HLEADARIYVLNGLQPGAEGTCAQ 111
Query: 93 LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK 152
V+ ++ + + Q+R LP +Q +TG + GI P F
Sbjct: 112 T-GVVPVLNSMEQYKRWRSTALAQNRVLPAALQFDTGM--TRLGIPPEDRAAFAAELTHT 168
Query: 153 YQLNVEGLMCIPPAMGNPK-----PHFYLLSEIARE 183
+ + +M + + +IA E
Sbjct: 169 DVVEIRFIMSHLASADETDNGQNAQQLAEMRKIAAE 204
>gi|118468264|ref|YP_890316.1| D-amino acid deaminase [Mycobacterium smegmatis str. MC2 155]
gi|118169551|gb|ABK70447.1| D-amino acid deaminase [Mycobacterium smegmatis str. MC2 155]
Length = 412
Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQK 152
+++V+ + + +L R L V ++V G + ++G +
Sbjct: 151 VCWVDSVAGAELMTA-ALRRSGARRRLDVCVEV--GMDGGRTGCRTTAEVDAVARAVVDS 207
Query: 153 YQLNVEGLMCIPPAMGN 169
+L + G+ A G
Sbjct: 208 PRLRLVGVSGYEAATGQ 224
>gi|121997989|ref|YP_001002776.1| diaminopimelate decarboxylase [Halorhodospira halophila SL1]
gi|121589394|gb|ABM61974.1| diaminopimelate decarboxylase [Halorhodospira halophila SL1]
Length = 418
Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V ++ ++ PV ++VN K GI + + +
Sbjct: 126 VESAAELERIASVAATENTPAPVALRVNPDVNPETHPYIATGLAQSKFGIALEEAEALYL 185
Query: 148 LCRQKYQLNVEGLMC 162
+L V G+ C
Sbjct: 186 QAANDPRLEVRGIAC 200
>gi|120600508|ref|YP_965082.1| diaminopimelate decarboxylase [Shewanella sp. W3-18-1]
gi|120560601|gb|ABM26528.1| diaminopimelate decarboxylase [Shewanella sp. W3-18-1]
Length = 414
Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 20/104 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L+L + + PV +++N + K GI ++ +
Sbjct: 124 VESSAELEQLNLVAGRLGKVAPVSLRINPDVDAGTHPYISTGLKENKFGIAMDEAEIVFA 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE 183
L V+G+ C I P + L+ +A +
Sbjct: 184 RAHALPHLKVKGVDCHIGSQLTEIQPFLDAMDRMLALIDRLAEQ 227
>gi|167625818|ref|YP_001676112.1| diaminopimelate decarboxylase [Shewanella halifaxensis HAW-EB4]
gi|167355840|gb|ABZ78453.1| diaminopimelate decarboxylase [Shewanella halifaxensis HAW-EB4]
Length = 414
Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L+L ++ + PV ++VN + K GI +
Sbjct: 124 VESAAELEQLNLVALRLGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAMEGAEAIFT 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
+ L V+G+ C I P + L+ +A + ++ +G
Sbjct: 184 RANELPGLEVKGVDCHIGSQLTEIKPFLDAMDRMLALIDRLAEQGIEIKHFDVG 237
>gi|168217469|ref|ZP_02643094.1| alanine racemase family protein [Clostridium perfringens NCTC 8239]
gi|182380489|gb|EDT77968.1| alanine racemase family protein [Clostridium perfringens NCTC 8239]
Length = 350
Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 95 DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKY 153
++I T+ E+ + L E K+ V+I V+TG + GI PN+ F+ + +
Sbjct: 93 NLILTLDNEEILNELDKETKKR-----VHIYVDTGM--NRMGIKPNKLDSFIERVKNEFP 145
Query: 154 QLNVEGLMCIPPAMGNPKPHFYLLSEI 180
L ++G+ + N K Y L +I
Sbjct: 146 NLEIDGIYT---HLHNAKDVNYTLKQI 169
>gi|18310043|ref|NP_561977.1| alanine racemase [Clostridium perfringens str. 13]
gi|18144722|dbj|BAB80767.1| probable alanine racemase [Clostridium perfringens str. 13]
Length = 350
Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 11/87 (12%)
Query: 95 DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKY 153
++I T+ E+ + L E K+ V+I V+TG + GI PN+ F+ + +
Sbjct: 93 NLILTLDNEEILNELDKETKKR-----VHIYVDTGM--NRMGIKPNKLDSFIERVKNEFP 145
Query: 154 QLNVEGLMCIPPAMGNPKPHFYLLSEI 180
L ++G+ + N K Y L +I
Sbjct: 146 NLEIDGIYT---HLHNAKDVNYTLKQI 169
>gi|306841349|ref|ZP_07474058.1| alanine racemase [Brucella sp. BO2]
gi|306288652|gb|EFM59988.1| alanine racemase [Brucella sp. BO2]
Length = 399
Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 34/242 (14%), Positives = 72/242 (29%), Gaps = 54/242 (22%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + +I + AV K + + ++ A G F
Sbjct: 27 ALRHNYSAIATRIAPTRTA-----------AVVKADAYGLGASRVAPAFYEAGCRDFFVA 75
Query: 54 --AENKLQEAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLL 109
E + L+ + D L + LQ + ++ ++ +
Sbjct: 76 HLGE---------AMALKPFLKPDATLYVLNGLQPGTEAACARE-GILPVLNSLEQVENW 125
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI------ 163
+ + + LP +Q +TG + G+ + + +++++ I
Sbjct: 126 AALATRLGKKLPALLQFDTGM--SRLGLSAKEFDRLLENVTLLSRIDIK--FAISHLANG 181
Query: 164 --PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT----SVRIGSGIFGE 217
P N + + + +AR KL F G T R G ++G
Sbjct: 182 DEPGNAANARQLAKMTALLARLPKLPAALANSGGTFL-----GKTYYFDLARPGIALYGI 236
Query: 218 RP 219
P
Sbjct: 237 DP 238
>gi|260767552|ref|ZP_05876488.1| diaminopimelate decarboxylase [Vibrio furnissii CIP 102972]
gi|260617452|gb|EEX42635.1| diaminopimelate decarboxylase [Vibrio furnissii CIP 102972]
Length = 417
Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++ D
Sbjct: 125 VESESELERLNQVAGEMGVKAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPDVYR 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
L ++ +++ G L I P + L+ + A + L +G
Sbjct: 185 LAQRLDHISIHGIDCHIGSQLTAIEPFIDATDRLLALIDNLKAEGIHIKHLDVG 238
>gi|146294666|ref|YP_001185090.1| diaminopimelate decarboxylase [Shewanella putrefaciens CN-32]
gi|145566356|gb|ABP77291.1| diaminopimelate decarboxylase [Shewanella putrefaciens CN-32]
gi|319427902|gb|ADV55976.1| diaminopimelate decarboxylase [Shewanella putrefaciens 200]
Length = 414
Score = 37.7 bits (87), Expect = 1.1, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 20/104 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L+L + + PV +++N + K GI ++ +
Sbjct: 124 VESSAELEQLNLVAGRLGKVAPVSLRINPDVDAGTHPYISTGLKENKFGIAMDEAEIVFA 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE 183
L V+G+ C I P + L+ +A +
Sbjct: 184 RAHALPHLKVKGVDCHIGSQLTEIQPFLDAMDRMLALIDRLAEQ 227
>gi|15640156|ref|NP_229783.1| diaminopimelate decarboxylase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121587729|ref|ZP_01677490.1| diaminopimelate decarboxylase [Vibrio cholerae 2740-80]
gi|121728316|ref|ZP_01681347.1| diaminopimelate decarboxylase [Vibrio cholerae V52]
gi|147674363|ref|YP_001218294.1| diaminopimelate decarboxylase [Vibrio cholerae O395]
gi|153214838|ref|ZP_01949646.1| diaminopimelate decarboxylase [Vibrio cholerae 1587]
gi|153803072|ref|ZP_01957658.1| diaminopimelate decarboxylase [Vibrio cholerae MZO-3]
gi|153818954|ref|ZP_01971621.1| diaminopimelate decarboxylase [Vibrio cholerae NCTC 8457]
gi|153822335|ref|ZP_01975002.1| diaminopimelate decarboxylase [Vibrio cholerae B33]
gi|153826290|ref|ZP_01978957.1| diaminopimelate decarboxylase [Vibrio cholerae MZO-2]
gi|153830026|ref|ZP_01982693.1| diaminopimelate decarboxylase [Vibrio cholerae 623-39]
gi|227080361|ref|YP_002808912.1| diaminopimelate decarboxylase [Vibrio cholerae M66-2]
gi|229508403|ref|ZP_04397907.1| diaminopimelate decarboxylase [Vibrio cholerae BX 330286]
gi|229508916|ref|ZP_04398406.1| diaminopimelate decarboxylase [Vibrio cholerae B33]
gi|229515840|ref|ZP_04405298.1| diaminopimelate decarboxylase [Vibrio cholerae TMA 21]
gi|229517030|ref|ZP_04406476.1| diaminopimelate decarboxylase [Vibrio cholerae RC9]
gi|229520083|ref|ZP_04409511.1| diaminopimelate decarboxylase [Vibrio cholerae TM 11079-80]
gi|229525021|ref|ZP_04414426.1| diaminopimelate decarboxylase [Vibrio cholerae bv. albensis VL426]
gi|229527133|ref|ZP_04416527.1| diaminopimelate decarboxylase [Vibrio cholerae 12129(1)]
gi|229606676|ref|YP_002877324.1| diaminopimelate decarboxylase [Vibrio cholerae MJ-1236]
gi|254291934|ref|ZP_04962715.1| diaminopimelate decarboxylase [Vibrio cholerae AM-19226]
gi|254851509|ref|ZP_05240859.1| diaminopimelate decarboxylase [Vibrio cholerae MO10]
gi|255743922|ref|ZP_05417877.1| diaminopimelate decarboxylase [Vibrio cholera CIRS 101]
gi|262151161|ref|ZP_06028300.1| diaminopimelate decarboxylase [Vibrio cholerae INDRE 91/1]
gi|262167030|ref|ZP_06034747.1| diaminopimelate decarboxylase [Vibrio cholerae RC27]
gi|297581834|ref|ZP_06943755.1| diaminopimelate decarboxylase [Vibrio cholerae RC385]
gi|298501107|ref|ZP_07010907.1| diaminopimelate decarboxylase [Vibrio cholerae MAK 757]
gi|13124077|sp|Q9KVL7|DCDA_VIBCH RecName: Full=Diaminopimelate decarboxylase; Short=DAP
decarboxylase
gi|9654525|gb|AAF93302.1| diaminopimelate decarboxylase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121548028|gb|EAX58106.1| diaminopimelate decarboxylase [Vibrio cholerae 2740-80]
gi|121629446|gb|EAX61875.1| diaminopimelate decarboxylase [Vibrio cholerae V52]
gi|124115081|gb|EAY33901.1| diaminopimelate decarboxylase [Vibrio cholerae 1587]
gi|124121391|gb|EAY40134.1| diaminopimelate decarboxylase [Vibrio cholerae MZO-3]
gi|126510516|gb|EAZ73110.1| diaminopimelate decarboxylase [Vibrio cholerae NCTC 8457]
gi|126520161|gb|EAZ77384.1| diaminopimelate decarboxylase [Vibrio cholerae B33]
gi|146316246|gb|ABQ20785.1| diaminopimelate decarboxylase [Vibrio cholerae O395]
gi|148874511|gb|EDL72646.1| diaminopimelate decarboxylase [Vibrio cholerae 623-39]
gi|149739958|gb|EDM54137.1| diaminopimelate decarboxylase [Vibrio cholerae MZO-2]
gi|150422144|gb|EDN14110.1| diaminopimelate decarboxylase [Vibrio cholerae AM-19226]
gi|227008249|gb|ACP04461.1| diaminopimelate decarboxylase [Vibrio cholerae M66-2]
gi|227011873|gb|ACP08083.1| diaminopimelate decarboxylase [Vibrio cholerae O395]
gi|229335364|gb|EEO00847.1| diaminopimelate decarboxylase [Vibrio cholerae 12129(1)]
gi|229338602|gb|EEO03619.1| diaminopimelate decarboxylase [Vibrio cholerae bv. albensis VL426]
gi|229342871|gb|EEO07861.1| diaminopimelate decarboxylase [Vibrio cholerae TM 11079-80]
gi|229346093|gb|EEO11065.1| diaminopimelate decarboxylase [Vibrio cholerae RC9]
gi|229347103|gb|EEO12064.1| diaminopimelate decarboxylase [Vibrio cholerae TMA 21]
gi|229354033|gb|EEO18966.1| diaminopimelate decarboxylase [Vibrio cholerae B33]
gi|229354676|gb|EEO19598.1| diaminopimelate decarboxylase [Vibrio cholerae BX 330286]
gi|229369331|gb|ACQ59754.1| diaminopimelate decarboxylase [Vibrio cholerae MJ-1236]
gi|254847214|gb|EET25628.1| diaminopimelate decarboxylase [Vibrio cholerae MO10]
gi|255738405|gb|EET93795.1| diaminopimelate decarboxylase [Vibrio cholera CIRS 101]
gi|262024548|gb|EEY43232.1| diaminopimelate decarboxylase [Vibrio cholerae RC27]
gi|262031055|gb|EEY49680.1| diaminopimelate decarboxylase [Vibrio cholerae INDRE 91/1]
gi|297533928|gb|EFH72768.1| diaminopimelate decarboxylase [Vibrio cholerae RC385]
gi|297540141|gb|EFH76202.1| diaminopimelate decarboxylase [Vibrio cholerae MAK 757]
Length = 417
Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++
Sbjct: 125 VESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVYR 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
L L+V G L + P + L+ + A + L +G
Sbjct: 185 LAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVG 238
>gi|289805606|ref|ZP_06536235.1| diaminopimelate decarboxylase [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 198
Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 13/121 (10%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN-----------TGYEIQKSGI 137
I + +I V + K + V ++V KSG+
Sbjct: 78 AIANDLYLIN-VDSLYELEHIDAISRKLKKVANVCVRVEPNVPSATHAELVTAFHAKSGL 136
Query: 138 MPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRD 196
Q ++ +++ GL M + + +P + E + + +G+ D
Sbjct: 137 DLEQAEETCRRILAMPYVHLRGLHMHVGDQVPESEPFAKATKVLVDESRRLEEVLGIKFD 196
Query: 197 F 197
Sbjct: 197 L 197
>gi|315178745|gb|ADT85659.1| diaminopimelate decarboxylase [Vibrio furnissii NCTC 11218]
Length = 417
Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++ D
Sbjct: 125 VESESELERLNQVAGEMGVKAPISLRINPDVDAKTHPYISTGLRDNKFGIAFDRAPDVYR 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
L ++ +++ G L I P + L+ + A + L +G
Sbjct: 185 LAQRLDHISIHGIDCHIGSQLTAIEPFIDATDRLLALIDNLKAEGIHIKHLDVG 238
>gi|258543551|ref|YP_003188984.1| alanine racemase [Acetobacter pasteurianus IFO 3283-01]
gi|256634629|dbj|BAI00605.1| alanine racemase [Acetobacter pasteurianus IFO 3283-01]
gi|256637685|dbj|BAI03654.1| alanine racemase [Acetobacter pasteurianus IFO 3283-03]
gi|256640739|dbj|BAI06701.1| alanine racemase [Acetobacter pasteurianus IFO 3283-07]
gi|256643794|dbj|BAI09749.1| alanine racemase [Acetobacter pasteurianus IFO 3283-22]
gi|256646849|dbj|BAI12797.1| alanine racemase [Acetobacter pasteurianus IFO 3283-26]
gi|256649902|dbj|BAI15843.1| alanine racemase [Acetobacter pasteurianus IFO 3283-32]
gi|256652892|dbj|BAI18826.1| alanine racemase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655946|dbj|BAI21873.1| alanine racemase [Acetobacter pasteurianus IFO 3283-12]
Length = 381
Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 7/125 (5%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
++ + ++L K + L V IQ++TG + + G+ V L V
Sbjct: 119 LNSLEQVAVLRDLAAKMDKPLDVAIQLDTG--MSRFGLSEADIHKLVASPELLKGLFVSL 176
Query: 160 LMCIPPAMGNPKP-----HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGI 214
+M P+ AR LS+ + L VR G+ +
Sbjct: 177 VMSHLACADTPQNPANTMQRERFEAYARILPQAALSLSASSGIFLGPQFHFDLVRPGAAL 236
Query: 215 FGERP 219
+G P
Sbjct: 237 YGVAP 241
>gi|213964601|ref|ZP_03392801.1| diaminopimelate decarboxylase [Corynebacterium amycolatum SK46]
gi|213952794|gb|EEB64176.1| diaminopimelate decarboxylase [Corynebacterium amycolatum SK46]
Length = 472
Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 25/95 (26%), Gaps = 20/95 (21%)
Query: 88 SEIVSLFDVIET------VSREKTASLLSLEMIKQSRFLPVYIQVN------------TG 129
L D I + LS + V ++V T
Sbjct: 140 KSTAELRDAISAGVGKIVLDSRSELRRLSQVAAEAGVVQDVLVRVKPGVEAHTHEFIATA 199
Query: 130 YEIQKSGIMPN--QTKDFVILCRQKYQLNVEGLMC 162
+E QK G + L + L + GL C
Sbjct: 200 HEDQKFGFSLASGSALEASSLVEEDENLRLVGLHC 234
>gi|167534547|ref|XP_001748949.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772629|gb|EDQ86279.1| predicted protein [Monosiga brevicollis MX1]
Length = 498
Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ--TKDFVILCRQKYQLNV 157
V ++ + + L ++I+VN G + GI + + + L
Sbjct: 211 VDDMSNLREVAEQCRLAAVRLGIWIEVNVGQ--NRCGIDHDSPVLLELARFIDEHPDLTF 268
Query: 158 EGLMCIPPAMGNPKPH 173
GL C A+ + + H
Sbjct: 269 RGLQCYQGALQHVRAH 284
>gi|160901955|ref|YP_001567536.1| diaminopimelate decarboxylase [Petrotoga mobilis SJ95]
gi|160359599|gb|ABX31213.1| diaminopimelate decarboxylase [Petrotoga mobilis SJ95]
Length = 430
Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 42/117 (35%), Gaps = 17/117 (14%)
Query: 101 SREKTASLLSLEMIKQSR---------FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
+ +S + K+++ + ++TG + K G+ + + +
Sbjct: 129 DEFRNIERISKRLRKKAKIYFRVIPNITPDTHKYISTGQKDSKFGMSFDDMLKLIKSIKN 188
Query: 152 KYQLNVEGLMC-IPPAMGNPKPH-------FYLLSEIARECKLTKLSMGMTRDFELA 200
L ++G+ I + +P+ F LL++I E + + F +A
Sbjct: 189 SENLEIKGIHAHIGSQINEAEPYVELVKTFFDLLNKIREETGAVLPEIDIGGGFGVA 245
>gi|90578686|ref|ZP_01234496.1| predicted amino acid aldolase or racemase [Vibrio angustum S14]
gi|90439519|gb|EAS64700.1| predicted amino acid aldolase or racemase [Vibrio angustum S14]
Length = 423
Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVE 158
V ++ L + L + I+ G E + G + Q LN++
Sbjct: 147 VDSKRNVEALEDFFASHEQKLNILIE--MGVEGGRCGCRTEQEIMALAQHIHQSPHLNLK 204
Query: 159 GL 160
G+
Sbjct: 205 GI 206
>gi|269928988|ref|YP_003321309.1| alanine racemase [Sphaerobacter thermophilus DSM 20745]
gi|269788345|gb|ACZ40487.1| alanine racemase [Sphaerobacter thermophilus DSM 20745]
Length = 408
Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
V + L + LPV+++V+TG + G+ P + ++ ++ VE
Sbjct: 112 AVGSATGLNRLLDALGDDLPPLPVHLKVDTGM--HRFGVEPEGVVELARALAREPRVRVE 169
Query: 159 GLMC 162
G+
Sbjct: 170 GVFT 173
>gi|207744536|ref|YP_002260928.1| diaminopimelate decarboxylase protein [Ralstonia solanacearum
IPO1609]
gi|206595942|emb|CAQ62869.1| diaminopimelate decarboxylase protein [Ralstonia solanacearum
IPO1609]
Length = 407
Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 20/75 (26%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L+ + PV ++VN + K G+ +
Sbjct: 113 VESIPELHRLNEVAGSLGKTAPVSLRVNPDVDAKTHPYISTGLKGNKFGVAFEEVLPTYR 172
Query: 148 LCRQKYQLNVEGLMC 162
L V G+ C
Sbjct: 173 AAAAMPNLRVVGIDC 187
>gi|254226601|ref|ZP_04920182.1| diaminopimelate decarboxylase [Vibrio cholerae V51]
gi|125620873|gb|EAZ49226.1| diaminopimelate decarboxylase [Vibrio cholerae V51]
Length = 417
Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++
Sbjct: 125 VESEPELQRLNKVAGELGVKAPISLRINPDVDAQTHPYISTGLRDNKFGITFDRAAQVYR 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
L L+V G L + P + L+ + A + L +G
Sbjct: 185 LAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVG 238
>gi|254360888|ref|ZP_04977034.1| diaminopimelate decarboxylase [Mannheimia haemolytica PHL213]
gi|261493013|ref|ZP_05989555.1| diaminopimelate decarboxylase [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|153092367|gb|EDN73430.1| diaminopimelate decarboxylase [Mannheimia haemolytica PHL213]
gi|261311357|gb|EEY12518.1| diaminopimelate decarboxylase [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 416
Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 24/117 (20%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKD 144
IE+VS ++ + + P+ ++VN + K G+ Q ++
Sbjct: 124 IESVSELH---RINQVAGELGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVTQARE 180
Query: 145 FVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + + G+ C + P + L+ ++ + +L L +G
Sbjct: 181 VYRLAKTLPNVKITGMDCHIGSQLTELQPFLDATDRLIILMEQLREDGIELHHLDLG 237
>gi|115372602|ref|ZP_01459909.1| diaminopimelate decarboxylase [Stigmatella aurantiaca DW4/3-1]
gi|115370323|gb|EAU69251.1| diaminopimelate decarboxylase [Stigmatella aurantiaca DW4/3-1]
Length = 457
Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 14/116 (12%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------ 132
+G Q + + + V + L + R P ++VN +
Sbjct: 148 VGKTQEEMARALAAGILLFN-VESAEELEALDAVGRQAGRRAPFGLRVNPDVDARTHRYI 206
Query: 133 ------QKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIA 181
K G+ + R+ + G+ C I + P LS++A
Sbjct: 207 STGLKTSKFGVPFEEAVALYARARKMKGVRALGVDCHIGSQLTRTAPVKAALSKVA 262
>gi|149180769|ref|ZP_01859272.1| Serine racemase [Bacillus sp. SG-1]
gi|148851559|gb|EDL65706.1| Serine racemase [Bacillus sp. SG-1]
Length = 365
Score = 37.7 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 57/152 (37%), Gaps = 23/152 (15%)
Query: 85 NKVSEIVSL----FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
K+ +++L + +V + L E+ L V+I+VN+G + + G+ P
Sbjct: 90 QKIKRLIALLEQDVKLKISVDNPVQLTHLQNELEHTPFTLEVWIKVNSG--LNRCGVEPG 147
Query: 141 -QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLS----------EIARECK---- 185
+L + G++ + + E A EC+
Sbjct: 148 KDAVALAKNIMGCTKLKLGGILTHAGHSYAASSYAEIERIGNLEGKTVVESAEECEKAGI 207
Query: 186 -LTKLSMGMTRDFELAIAS-GATSVRIGSGIF 215
+ S+G T ++++ G T +R G+ +F
Sbjct: 208 PIPVRSVGSTPTYKISGNVPGITEIRPGNAVF 239
>gi|296159586|ref|ZP_06842410.1| diaminopimelate decarboxylase [Burkholderia sp. Ch1-1]
gi|295890294|gb|EFG70088.1| diaminopimelate decarboxylase [Burkholderia sp. Ch1-1]
Length = 420
Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L+ + + PV ++VN + K G+ +
Sbjct: 126 VESIPELDRLNAVAAEMGKKAPVSLRVNPDVDAKTHPYISTGLKSNKFGVAFEDARATYQ 185
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L V G+ C + P + L+ +I ++ K+ + +G
Sbjct: 186 AAAGMANLEVVGIDCHIGSQITEVAPYLDAVDKVLELVEQIEQDGLKIRHIDVG 239
>gi|91776793|ref|YP_546549.1| diaminopimelate decarboxylase [Methylobacillus flagellatus KT]
gi|91710780|gb|ABE50708.1| diaminopimelate decarboxylase [Methylobacillus flagellatus KT]
Length = 445
Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V L+ + + PV ++VN TG + K G+ +
Sbjct: 153 VESASELDRLNDVAGRLGKTAPVSLRVNPNVDAKTHPYISTGLKNNKFGVAYEDAFNLYQ 212
Query: 148 LCRQKYQLNVEGLMC 162
+ V G+ C
Sbjct: 213 HAASLPNIAVHGVDC 227
>gi|17547698|ref|NP_521100.1| diaminopimelate decarboxylase [Ralstonia solanacearum GMI1000]
gi|17430003|emb|CAD16688.1| probable diaminopimelate decarboxylase protein [Ralstonia
solanacearum GMI1000]
Length = 451
Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L+ + PV ++VN + K G+ ++
Sbjct: 157 VESIPELHRLNEVAGSLGKTAPVSLRVNPDVDAKTHPYISTGLKGNKFGVAFDEVLPTYR 216
Query: 148 LCRQKYQLNVEGLMC 162
L V G+ C
Sbjct: 217 AAAAMPNLRVVGIDC 231
>gi|319791988|ref|YP_004153628.1| alanine racemase domain protein [Variovorax paradoxus EPS]
gi|315594451|gb|ADU35517.1| alanine racemase domain protein [Variovorax paradoxus EPS]
Length = 441
Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 40/126 (31%), Gaps = 20/126 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVE 158
V +L+ + + +P + + G E ++G + R ++ +
Sbjct: 157 VDSLAQLALIEDWAKRHTASVPFEVMIEIGVEGARTGCRTHEEAVTLATRLRASEKVKLV 216
Query: 159 GLMCI---------PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVR 209
G+ P + IAR C KL E+ +++G
Sbjct: 217 GIETYEGQGATGVSEPDTAYANTLMDRVEAIARHCDTQKL----FETDEVLVSAG----- 267
Query: 210 IGSGIF 215
GS IF
Sbjct: 268 -GSAIF 272
>gi|293602765|ref|ZP_06685205.1| threonine aldolase [Achromobacter piechaudii ATCC 43553]
gi|292818781|gb|EFF77822.1| threonine aldolase [Achromobacter piechaudii ATCC 43553]
Length = 379
Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 44/129 (34%), Gaps = 4/129 (3%)
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
K+ EA + + +G + + ++ + + V + LS M +
Sbjct: 82 KVSEALPFVAAGIHDIHISNEVVGPAKLALLGQLARVAKMSVCVDNAHNLAQLSQAMTQA 141
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
+ V ++V+ G + G+ + R + GL ++ + +
Sbjct: 142 GAQIDVLVEVDVGQ--GRCGVSDDALVLALAQQARDLPGVQFVGLQAYHGSVQHART-RE 198
Query: 176 LLSEIAREC 184
++I ++
Sbjct: 199 ERAQICKQA 207
>gi|261495167|ref|ZP_05991630.1| diaminopimelate decarboxylase [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261309143|gb|EEY10383.1| diaminopimelate decarboxylase [Mannheimia haemolytica serotype A2
str. OVINE]
Length = 416
Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 24/117 (20%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKD 144
IE+VS ++ + + P+ ++VN + K G+ Q ++
Sbjct: 124 IESVSELH---RINQVAGELGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVTQARE 180
Query: 145 FVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + + G+ C + P + L+ ++ + +L L +G
Sbjct: 181 VYRLAKTLPNVKITGMDCHIGSQLTELQPFLDATDRLIILMEQLREDGIELHHLDLG 237
>gi|207721858|ref|YP_002252296.1| diaminopimelate decarboxylase protein [Ralstonia solanacearum
MolK2]
gi|206587025|emb|CAQ17609.1| diaminopimelate decarboxylase protein [Ralstonia solanacearum
MolK2]
Length = 407
Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 20/75 (26%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L+ + PV ++VN + K G+ +
Sbjct: 113 VESIPELHRLNEVAGSLGKTAPVSLRVNPDVDAKTHPYISTGLKGNKFGVAFEEVLPTYR 172
Query: 148 LCRQKYQLNVEGLMC 162
L V G+ C
Sbjct: 173 AAAAMPNLRVVGIDC 187
>gi|83748189|ref|ZP_00945216.1| Diaminopimelate decarboxylase [Ralstonia solanacearum UW551]
gi|83725157|gb|EAP72308.1| Diaminopimelate decarboxylase [Ralstonia solanacearum UW551]
Length = 419
Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 20/75 (26%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L+ + PV ++VN + K G+ +
Sbjct: 125 VESIPELHRLNEVAGSLGKTAPVSLRVNPDVDAKTHPYISTGLKGNKFGVAFEEVLPTYR 184
Query: 148 LCRQKYQLNVEGLMC 162
L V G+ C
Sbjct: 185 AAAAMPNLRVVGIDC 199
>gi|171910232|ref|ZP_02925702.1| diaminopimelate decarboxylase [Verrucomicrobium spinosum DSM 4136]
Length = 433
Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 21/113 (18%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVIL 148
E ++ + PV ++VN TG K G+ ++ D
Sbjct: 125 ESEAELRQINEVAGTLGKKAPVALRVNPNVDAKTHKYISTGKSENKFGVDFDRILDAYAA 184
Query: 149 CR-QKYQLNVEGL-M-------CIPPAMGNPKPHFYLLSEIARECKLTKLSMG 192
+ L++ GL M I P + K L+ ++ + S+G
Sbjct: 185 IATECEHLDIRGLQMHIGSQLTSIDPFVEAAKKVAPLVEKLKERHHIKFFSIG 237
>gi|120405303|ref|YP_955132.1| diaminopimelate decarboxylase [Mycobacterium vanbaalenii PYR-1]
gi|119958121|gb|ABM15126.1| diaminopimelate decarboxylase [Mycobacterium vanbaalenii PYR-1]
Length = 476
Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 27/99 (27%), Gaps = 21/99 (21%)
Query: 82 LQSNKVSEIVSLFDVIET------VSREKTASLLSLEMIKQSRFLPVYIQV--------- 126
L N + L +E V L + V I+V
Sbjct: 138 LHGNN-KSVAELTAAVEAGIEHVVVDSMTEIDRLDKIAGEAGVVQDVLIRVTVGVEAHTH 196
Query: 127 ---NTGYEIQKSGIMPN--QTKDFVILCRQKYQLNVEGL 160
+T +E QK G+ V + L + GL
Sbjct: 197 EFISTAHEDQKFGLSLASGAAMTAVRRVFETDHLRLVGL 235
>gi|222107141|ref|YP_002547932.1| hypothetical protein Avi_6243 [Agrobacterium vitis S4]
gi|221738320|gb|ACM39216.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 366
Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 40/126 (31%), Gaps = 13/126 (10%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEG 159
T LS + + L V ++ +TG + G+ P L G
Sbjct: 122 DSIVTVEGLSNYFADR-KPLTVLVECDTGG--GRCGVQTPADAVGLAQAISASKGLRFGG 178
Query: 160 LMCIP-PAMGNPKPHFYLLSEIAREC-----KLTKLSMGMTRDFELA-IASGATSVRIGS 212
+M P F ++I +S G T A + AT R G+
Sbjct: 179 IMTYPKAHTEQVVESF--FAQILTSLTTLGIACPIVSNGGTPSLFSAHLVPSATEHRAGT 236
Query: 213 GIFGER 218
I+ +R
Sbjct: 237 YIYSDR 242
>gi|153002477|ref|YP_001368158.1| diaminopimelate decarboxylase [Shewanella baltica OS185]
gi|151367095|gb|ABS10095.1| diaminopimelate decarboxylase [Shewanella baltica OS185]
Length = 414
Score = 37.7 bits (87), Expect = 1.3, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 20/104 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L+L + + PV +++N + K GI ++ +
Sbjct: 124 VESSAELEQLNLVAGRLGKVAPVSLRINPDVDAGTHPYISTGLKENKFGIAMDEAEIVFA 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE 183
L V+G+ C I P + L+ +A +
Sbjct: 184 RAHALPHLKVKGVDCHIGSQLTEIKPFLDAMDRMLALIDRLAEQ 227
>gi|293608485|ref|ZP_06690788.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292829058|gb|EFF87420.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 430
Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 62/170 (36%), Gaps = 25/170 (14%)
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K K LR D + I + Q+ + E++ +D A+ +S + +
Sbjct: 118 KGKITRLRTATDSE---IINAQALNIEELLGNYD---------QAARMSKWAEANNTTVH 165
Query: 122 VYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ +N+G + M K+ + + L ++G+M A+ + K L++
Sbjct: 166 YSLALNSGGMDRNGLEMATALGKEQAVAITKLPHLKIDGIMT-HYAVEDEKFVRERLAQF 224
Query: 181 ARE---------CKLTKLSMGMTRDFELAIASGAT--SVRIGSGIFGERP 219
+ +L++ F + VR G+ I+G+ P
Sbjct: 225 NEQTAWLIKKAKLNRKELTLHTANSFATVNVPESHLDMVRAGAIIYGDFP 274
>gi|115401094|ref|XP_001216135.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114190076|gb|EAU31776.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 367
Score = 37.3 bits (86), Expect = 1.3, Method: Composition-based stats.
Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVE 158
V E AS ++ + + P+ ++ + ++G+ P + L +
Sbjct: 115 VDSEVAASAINDALARSGIDEPIATLIDLDVGLHRTGVKPGEPALALARHVGGLKHLKLI 174
Query: 159 GL 160
G+
Sbjct: 175 GV 176
>gi|308051401|ref|YP_003914967.1| diaminopimelate decarboxylase [Ferrimonas balearica DSM 9799]
gi|307633591|gb|ADN77893.1| diaminopimelate decarboxylase [Ferrimonas balearica DSM 9799]
Length = 414
Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 28/184 (15%), Positives = 43/184 (23%), Gaps = 67/184 (36%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
I A V V K + ++R AL G F N
Sbjct: 90 IQAGGDPGKVVFSGVGKT--ADEMRQALQAGIYCF--N---------------------- 123
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------- 131
V E L+ PV +++N +
Sbjct: 124 ---------------------VESEAELERLNEVAGAMGLKAPVSLRINPDVDAGTHPYI 162
Query: 132 -----IQKSGIMPNQTKDFVILCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLS 178
K GI + + L V+G L +PP + L+
Sbjct: 163 STGLKENKFGIAMARAEQVFQRAASLPNLQVKGADCHIGSQLTTLPPFIDALDRLLALVD 222
Query: 179 EIAR 182
+A
Sbjct: 223 RLAE 226
>gi|260590851|ref|ZP_05856309.1| diaminopimelate decarboxylase [Prevotella veroralis F0319]
gi|260537202|gb|EEX19819.1| diaminopimelate decarboxylase [Prevotella veroralis F0319]
Length = 385
Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 12/73 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E+ +++ K+ + V +++N TG K GI +
Sbjct: 113 VESEEELEIINKLAQKRGKIASVCLRINPEVGAHTHANITTGLAENKFGIALRYVPSIIS 172
Query: 148 LCRQKYQLNVEGL 160
+ +N+ GL
Sbjct: 173 AALEITHINLIGL 185
>gi|217975044|ref|YP_002359795.1| diaminopimelate decarboxylase [Shewanella baltica OS223]
gi|217500179|gb|ACK48372.1| diaminopimelate decarboxylase [Shewanella baltica OS223]
Length = 414
Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 20/104 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L+L + + PV +++N + K GI ++ +
Sbjct: 124 VESSAELEQLNLVAGRLGKVAPVSLRINPDVDAGTHPYISTGLKENKFGIAMDEAEIVFA 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE 183
L V+G+ C I P + L+ +A +
Sbjct: 184 RAHALPHLKVKGVDCHIGSQLTEIKPFLDAMDRMLALIDRLAEQ 227
>gi|332798070|ref|YP_004459569.1| alanine racemase domain-containing protein [Tepidanaerobacter sp.
Re1]
gi|332695805|gb|AEE90262.1| alanine racemase domain protein [Tepidanaerobacter sp. Re1]
Length = 371
Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
S K + I+ + A +L+ + I +++G + + GI+P +
Sbjct: 98 SKKCNFIIR-------IDNYDGAKMLNDAAEAAGVKVNYTIIIDSG--LHRFGILPEKVL 148
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPH 173
DF + LN G+ P + +
Sbjct: 149 DFANSLKDFKALNFLGISTHPGHVYSASKQ 178
>gi|260598252|ref|YP_003210823.1| alanine racemase [Cronobacter turicensis z3032]
gi|260217429|emb|CBA31526.1| Alanine racemase, catabolic [Cronobacter turicensis z3032]
Length = 356
Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 11/131 (8%)
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
L + + + K +L K + L VY+++N+G + G P + +
Sbjct: 95 RLTTSVHSNWQLK-----ALAGAKLNAPLDVYLKINSGM--NRLGFTPERVHSIWQQLKA 147
Query: 152 KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI---ASGATSV 208
+ LM P + I + + ++ A+ + V
Sbjct: 148 IANVGQITLMAHFADADRPDGIDAAMVRIEQAAEGIDAPRSLSNS-AAALWHPQAHFDWV 206
Query: 209 RIGSGIFGERP 219
R G ++G P
Sbjct: 207 RPGIVLYGASP 217
>gi|238025969|ref|YP_002910200.1| Diaminopimelate decarboxylase [Burkholderia glumae BGR1]
gi|237875163|gb|ACR27496.1| Diaminopimelate decarboxylase [Burkholderia glumae BGR1]
Length = 423
Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L+ + PV ++VN + K G+ +
Sbjct: 126 VESVPELDRLNAVAGSLGKRAPVSLRVNPDVDPKTHPYISTGLKANKFGVAFADARATYR 185
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
L V G+ C I + P+ L ++
Sbjct: 186 AADALPNLQVAGIDCHIGSQITELSPYLDALDKVLD 221
>gi|16332032|ref|NP_442760.1| diaminopimelate decarboxylase [Synechocystis sp. PCC 6803]
gi|2499348|sp|Q55484|DCDA_SYNY3 RecName: Full=Diaminopimelate decarboxylase; Short=DAP
decarboxylase
gi|1001344|dbj|BAA10831.1| diaminopimelate decarboxylase [Synechocystis sp. PCC 6803]
Length = 469
Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 12/73 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQ------------VNTGYEIQKSGIMPNQTKDFVI 147
V L+ + + ++ + TG+ K G PNQ +
Sbjct: 164 VDNWLELETLTKLAADSGAPVKIMLRLTPGIECHTHEYIKTGHLDSKFGFDPNQLEAVFT 223
Query: 148 LCRQKYQLNVEGL 160
Q+ L+ GL
Sbjct: 224 YIAQQPSLHCLGL 236
>gi|21674193|ref|NP_662258.1| diaminopimelate decarboxylase [Chlorobium tepidum TLS]
gi|21647356|gb|AAM72600.1| diaminopimelate decarboxylase [Chlorobium tepidum TLS]
Length = 416
Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 19/118 (16%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVIL 148
++ + V +++N TG +K GI + L
Sbjct: 128 ESISELKAINSVAEHLGKVAQVGVRINPNVTAETHPYITTGDSKEKFGIDEAGLGEVFEL 187
Query: 149 CRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEI------ARECKLTKLSMGMTRDFEL 199
+ L + GL M I + +P+ + ++ AR + + F +
Sbjct: 188 FKTLPNLELHGLDMHIGSQIFDPEYYVAATQKLLEVLESARHLGFDIKWLDLGGGFPV 245
>gi|239623709|ref|ZP_04666740.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239521740|gb|EEQ61606.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 396
Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 16/124 (12%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVEGLMCIP 164
A LS + +++ V+TG + G+ P+ ++ D V + +EG+
Sbjct: 109 AQKLSAVAAAMGKKANIHLAVDTGM--NRIGMKPDQESADMVYRINMLEGIRIEGMFTHF 166
Query: 165 PAMGNPKPHFYLLSEIARECKLTKL--SMG-------MTRDFELAIASGAT---SVRIGS 212
Y L + + ++ S G + + + GA VR G
Sbjct: 167 ARADEADKTTYGL-QFGKYNDFVEMLGSRGITIPIRHCSNSAGIVESLGANGLDMVRAGI 225
Query: 213 GIFG 216
I+G
Sbjct: 226 SIYG 229
>gi|56751260|ref|YP_171961.1| diaminopimelate decarboxylase [Synechococcus elongatus PCC 6301]
gi|81299073|ref|YP_399281.1| diaminopimelate decarboxylase [Synechococcus elongatus PCC 7942]
gi|56686219|dbj|BAD79441.1| diaminopimelate decarboxylase [Synechococcus elongatus PCC 6301]
gi|81167954|gb|ABB56294.1| diaminopimelate decarboxylase [Synechococcus elongatus PCC 7942]
Length = 464
Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 12/73 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQ------------VNTGYEIQKSGIMPNQTKDFVI 147
V + L +Q R + V I+ + TG+ K G P+Q +
Sbjct: 159 VDNWQELRNLEAIAAEQQREVRVMIRFTPGIECHTHEYIRTGHLDSKFGFDPDQLDALLA 218
Query: 148 LCRQKYQLNVEGL 160
+ L GL
Sbjct: 219 ALVDQPYLRCIGL 231
>gi|261867422|ref|YP_003255344.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261412754|gb|ACX82125.1| diaminopimelate decarboxylase [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 416
Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
+ E ++ + P+ ++VN + K G+ Q ++
Sbjct: 124 IESEAELLRINQVAGDIGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVEQAREVYK 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + G+ C + P + L+ ++ ++ +L L +G
Sbjct: 184 LATTLPNIEIVGMDCHIGSQLTELQPFLDAADRLIMLMEQLKQDSIQLKHLDLG 237
>gi|169335517|ref|ZP_02862710.1| hypothetical protein ANASTE_01931 [Anaerofustis stercorihominis DSM
17244]
gi|169258255|gb|EDS72221.1| hypothetical protein ANASTE_01931 [Anaerofustis stercorihominis DSM
17244]
Length = 300
Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 175 YLLSEIARECKLTKLSMGMTRDFELA---IASGATSVRIGSGIF 215
++ ++A+E ++ LS G ++ A I +G+T V +GS IF
Sbjct: 225 RMVHQVAKEIEIPILSYGGVSNYMDALEFIMAGSTLVGVGSAIF 268
>gi|330892010|gb|EGH24671.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. mori str.
301020]
Length = 415
Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + P+ ++VN + K GI +D I
Sbjct: 124 VESTDELERLQEVAAELDVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYI 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
Q L V G+ C I + +P L+ +
Sbjct: 184 RASQLPNLEVIGVDCHIGSQLTTLEPFIDALARLLD 219
>gi|254282311|ref|ZP_04957279.1| diaminopimelate decarboxylase [gamma proteobacterium NOR51-B]
gi|219678514|gb|EED34863.1| diaminopimelate decarboxylase [gamma proteobacterium NOR51-B]
Length = 417
Score = 37.3 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 28/182 (15%), Positives = 44/182 (24%), Gaps = 67/182 (36%)
Query: 19 ILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRF 78
I A V V K + IR AL G F N
Sbjct: 89 IAAGGDPSKVVFSGVGK--SCEGIRQALDAGIRCF--N---------------------- 122
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------- 131
V E ++L+ + + PV ++VN +
Sbjct: 123 ---------------------VESEAELNVLNEIAAECGKVAPVSLRVNPDVDANTHPYI 161
Query: 132 -----IQKSGIMPNQTKDFVILCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLS 178
K G+ + KD + G L+ I P + L+
Sbjct: 162 STGLKENKFGVDIERAKDLYEQAAAMSFIEPVGVDCHIGSQLLSITPFIDAVDRLLALVD 221
Query: 179 EI 180
+
Sbjct: 222 AL 223
>gi|254720214|ref|ZP_05182025.1| Alr, alanine racemase [Brucella sp. 83/13]
gi|265985224|ref|ZP_06097959.1| alanine racemase [Brucella sp. 83/13]
gi|306838644|ref|ZP_07471480.1| alanine racemase [Brucella sp. NF 2653]
gi|264663816|gb|EEZ34077.1| alanine racemase [Brucella sp. 83/13]
gi|306406287|gb|EFM62530.1| alanine racemase [Brucella sp. NF 2653]
Length = 399
Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 33/240 (13%), Positives = 70/240 (29%), Gaps = 50/240 (20%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + +I + AV K + + ++ A G F
Sbjct: 27 ALRHNYSAIATRIAPTRTA-----------AVVKADAYGLGASRVAPAFYEAGCRDFFVA 75
Query: 54 --AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
E + + D L + LQ + ++ ++ + +
Sbjct: 76 HLGE-------AVALKPFLKPDATLYVLNGLQPGTEAACARE-GILPVLNSLEQVENWAA 127
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI-------- 163
+ + LP +Q +TG + G+ + + +++++ I
Sbjct: 128 LATRLGKKLPALLQFDTGM--SRLGLSAKEFDRLLENVTILSRIDIK--FAISHLANGDE 183
Query: 164 PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT----SVRIGSGIFGERP 219
P N + + + +AR KL F G T R G ++G P
Sbjct: 184 PGNAANARQLAKMTALLARLPKLPAALANSGGTFL-----GKTYYFDLARPGIALYGIDP 238
>gi|224583151|ref|YP_002636949.1| amino acid decarboxylase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224467678|gb|ACN45508.1| putative amino acid decarboxylase [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
Length = 465
Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 27/184 (14%)
Query: 33 VSKMVDSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLRKEWDVQLR-----FIGSLQSNK 86
SK + A+ G EA ++ +RK ++ R F G ++
Sbjct: 78 ASKTCSVMGVLKAIRDAGICA-------EANSQY-EVRKCLEIGFRGDQIVFNGVVKKPA 129
Query: 87 -VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------TGYEI-----QK 134
+ ++ + V + K + V ++V T E+ K
Sbjct: 130 DLEYAIANDLYLINVDSLYELEHIDAISRKLKKVANVCVRVEPNVPSATHAELVTAFHAK 189
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM 193
SG+ Q ++ +++ GL M + + +P + E + + +G+
Sbjct: 190 SGLDLEQAEETCRRILAMTYVHLRGLHMHVGDQVPESEPFAKATKVLVDESRRLEEVLGI 249
Query: 194 TRDF 197
D
Sbjct: 250 KFDL 253
>gi|294102372|ref|YP_003554230.1| alanine racemase [Aminobacterium colombiense DSM 12261]
gi|293617352|gb|ADE57506.1| alanine racemase [Aminobacterium colombiense DSM 12261]
Length = 372
Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP 165
A ++S E + Q + + + + + G +P Q + + + +EGL
Sbjct: 109 AQMMSREAVNQGKTA--LLHLKIDTGMGRIGFLPEQIPGIIDDILKLPGIKIEGLFT-HF 165
Query: 166 AMGNPKPHFYLLSEIARECKL 186
A + K Y + AR K+
Sbjct: 166 ATADEKRLDYTNQQFARYMKV 186
>gi|87121333|ref|ZP_01077223.1| diaminopimelate decarboxylase [Marinomonas sp. MED121]
gi|86163490|gb|EAQ64765.1| diaminopimelate decarboxylase [Marinomonas sp. MED121]
Length = 418
Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%)
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVILCRQKYQL 155
L+ K + PV ++VN + K GI N + + L
Sbjct: 132 RLNEVAEKLGKKAPVSLRVNPDVDAKTHPYISTGLKENKFGIDINDAVRIYTIAHELPYL 191
Query: 156 NVEGLMC-IPPAMGNPKP---HFYLLSEIARECKL 186
+V G+ C I + P F L ++ E L
Sbjct: 192 DVMGVDCHIGSQLTELTPFIDAFDRLLKLIDELAL 226
>gi|330994277|ref|ZP_08318205.1| Diaminopimelate decarboxylase [Gluconacetobacter sp. SXCC-1]
gi|329758744|gb|EGG75260.1| Diaminopimelate decarboxylase [Gluconacetobacter sp. SXCC-1]
Length = 460
Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 16/106 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V + LLS + PV +++N + K GI N+ D
Sbjct: 152 VESAEELELLSTVAQAEGLEAPVALRINPDVDAGTHAKITTGLATNKFGIPYNRAVDLYA 211
Query: 148 LCRQKYQLNVEGL-MCIPPA---MGNPKPHFYLLSEIARECKLTKL 189
+ GL M I M + + L+++ R + L
Sbjct: 212 HAATLPGIRPVGLAMHIGSQIVRMQPYRTAYARLADLVRAIRARGL 257
>gi|223042044|ref|ZP_03612221.1| diaminopimelate decarboxylase [Actinobacillus minor 202]
gi|223017161|gb|EEF15596.1| diaminopimelate decarboxylase [Actinobacillus minor 202]
Length = 416
Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 12/104 (11%), Positives = 33/104 (31%), Gaps = 20/104 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V ++ + + P+ ++VN + K G+ Q ++
Sbjct: 124 VESISELHRINEVAGQLGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVQQAREVYR 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE 183
L + + + G+ C + P + L+ ++ +
Sbjct: 184 LASRLPNVKITGMDCHIGSQLTELQPFLDATDRLIILMEQLKED 227
>gi|153008776|ref|YP_001369991.1| alanine racemase [Ochrobactrum anthropi ATCC 49188]
gi|151560664|gb|ABS14162.1| alanine racemase [Ochrobactrum anthropi ATCC 49188]
Length = 380
Score = 37.3 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 28/194 (14%), Positives = 67/194 (34%), Gaps = 40/194 (20%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + + I + AV K + + ++ A G F
Sbjct: 27 ALRHNYSAIARHIAPTRAA-----------AVVKADAYGLGASRVAPAFYDAGCRDFFVA 75
Query: 54 --AENKLQEAKKKWIPLRK--EWDVQLRFIGSLQSNKVSEIVS--LFDVIETVSREKTAS 107
E I L+ + D L + LQ + V+ ++ + + +
Sbjct: 76 HLGE---------AIALKPFIQPDATLYVLNGLQPGTEEACAREGILPVLNSLEQIENWA 126
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAM 167
L +Q + LP +Q++TG + + G+ P + + F+ ++++ ++ +
Sbjct: 127 AL---ATRQGKKLPALLQLDTG--MSRLGLSPKEFERFLENATLLDAIDIKFVISHLASG 181
Query: 168 GNPKPHFYLLSEIA 181
P+ ++A
Sbjct: 182 DEPENA-ANARQLA 194
>gi|254472752|ref|ZP_05086151.1| alanine racemase domain protein [Pseudovibrio sp. JE062]
gi|211958216|gb|EEA93417.1| alanine racemase domain protein [Pseudovibrio sp. JE062]
Length = 383
Score = 37.3 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEG 159
+ LS +K L V ++++ G + G+ + L+ G
Sbjct: 129 DNLPNIAALSEAAVKHGTELEVLVELDCGG--SRCGVADSAAVLELATEIINAPNLHFAG 186
Query: 160 L 160
+
Sbjct: 187 I 187
>gi|163851214|ref|YP_001639257.1| diaminopimelate decarboxylase [Methylobacterium extorquens PA1]
gi|163662819|gb|ABY30186.1| diaminopimelate decarboxylase [Methylobacterium extorquens PA1]
Length = 422
Score = 37.3 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 16/101 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E + LS + + R PV I+VN TG K GI ++ +
Sbjct: 124 VESEPELAALSEVAVARGRKAPVSIRVNPDVDALTHAKISTGKSDNKFGIPISRARAVYA 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHF---YLLSEIAREC 184
+ L + G+ I + + P LL E+AR+
Sbjct: 184 GAARLPGLEIVGVDAHIGSQITDLTPFDNAARLLCELARDL 224
>gi|169245596|gb|ACA50844.1| LysA [Agrobacterium tumefaciens]
gi|169245598|gb|ACA50845.1| LysA [Agrobacterium tumefaciens]
gi|169245602|gb|ACA50847.1| LysA [Agrobacterium tumefaciens]
gi|169245610|gb|ACA50851.1| LysA [Agrobacterium tumefaciens]
gi|169245612|gb|ACA50852.1| LysA [Agrobacterium tumefaciens]
gi|169245626|gb|ACA50859.1| LysA [Agrobacterium tumefaciens]
gi|169245628|gb|ACA50860.1| LysA [Agrobacterium tumefaciens]
gi|169245630|gb|ACA50861.1| LysA [Agrobacterium tumefaciens]
Length = 180
Score = 37.3 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIA 181
++TG + K GI + + + V G+ M I + +P F LL E+
Sbjct: 17 ISTGKKENKFGISYERARAVYAHAATLPGIEVTGIDMHIGSQITELQPFEDAFRLLRELV 76
Query: 182 RECKLT 187
+
Sbjct: 77 ESLRTD 82
>gi|330878524|gb|EGH12673.1| diaminopimelate decarboxylase [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 412
Score = 37.3 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECK 185
NTG E K GI +D + L R Y+L++ GL M I + + L ++
Sbjct: 150 NTGGENSKHGIWHTHLQDALKLVRH-YRLHLVGLHMHIGSGVD-----YQHLQQVC--ST 201
Query: 186 LTKLSMGMTRDFELAIASG 204
+ +L + M D E AI++G
Sbjct: 202 MAELVVEMDHDIE-AISAG 219
>gi|325121779|gb|ADY81302.1| alanine racemase [Acinetobacter calcoaceticus PHEA-2]
Length = 430
Score = 37.3 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 29/171 (16%), Positives = 66/171 (38%), Gaps = 27/171 (15%)
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
K K LR D + I + Q+ + E++ +D A+ +S + +
Sbjct: 118 KGKITRLRTATDSE---IINAQALNIEELLGNYD---------QAARMSKWAEANNTTVH 165
Query: 122 VYIQVNTGYEIQKSGIMPNQT--KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ +N+G + ++G+ + K+ + + L ++G+M A+ + K L++
Sbjct: 166 YSLALNSGG-MDRNGLEMSTALGKEQAVAITKLPHLKIDGIMT-HYAVEDEKFVRERLAQ 223
Query: 180 IARE---------CKLTKLSMGMTRDFELAIASGAT--SVRIGSGIFGERP 219
+ +L++ F + VR G+ I+G+ P
Sbjct: 224 FNEQTAWLIKKAKLNRKELTLHTANSFATVNVPESHLDMVRAGAIIYGDFP 274
>gi|240138367|ref|YP_002962839.1| diaminopimelate decarboxylase [Methylobacterium extorquens AM1]
gi|240008336|gb|ACS39562.1| diaminopimelate decarboxylase [Methylobacterium extorquens AM1]
Length = 422
Score = 37.3 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 16/101 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E + LS + + R PV I+VN TG K GI ++ +
Sbjct: 124 VESEPELAALSEVAVARGRKAPVSIRVNPDVDALTHAKISTGKSDNKFGIPISRARAVYA 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHF---YLLSEIAREC 184
+ L + G+ I + + P LL E+AR+
Sbjct: 184 GAARLPGLEIVGVDAHIGSQITDLTPFDNAARLLCELARDL 224
>gi|110635369|ref|YP_675577.1| diaminopimelate decarboxylase [Mesorhizobium sp. BNC1]
gi|110286353|gb|ABG64412.1| diaminopimelate decarboxylase [Chelativorans sp. BNC1]
Length = 421
Score = 37.3 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 32/104 (30%), Gaps = 16/104 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V LLS PV +++N TG K GI +
Sbjct: 124 VESLPELELLSARARAIGVKAPVSLRINPDVDAKTHKKISTGKSENKFGIPWKDARAAYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIARECKLT 187
L V G+ M I + +P F LL+E+ +
Sbjct: 184 RAASLPGLEVTGIDMHIGSQITELQPFDQAFALLTELTETLRAD 227
>gi|226946776|ref|YP_002801849.1| diaminopimelate decarboxylase [Azotobacter vinelandii DJ]
gi|226721703|gb|ACO80874.1| diaminopimelate decarboxylase [Azotobacter vinelandii DJ]
Length = 415
Score = 37.3 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + L + PV ++VN + K GI Q ++
Sbjct: 124 VESDVELERLQEVAAELGVKAPVSLRVNPDVDAQTHPYISTGLKENKFGIDIEQAEEVYA 183
Query: 148 LCRQKYQLNVEGLMC 162
+ L V G+ C
Sbjct: 184 RAAELPNLEVLGIDC 198
>gi|170751205|ref|YP_001757465.1| alanine racemase [Methylobacterium radiotolerans JCM 2831]
gi|170657727|gb|ACB26782.1| alanine racemase [Methylobacterium radiotolerans JCM 2831]
Length = 377
Score = 37.3 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 7/104 (6%)
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK-----PHFY 175
P +QV+TG + G P++ + L++ +M G P
Sbjct: 138 PAILQVDTGM--ARFGFAPDEVGALLDRPDALAGLDLRLVMSHLACAGEPDSPVNAAQLS 195
Query: 176 LLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + R S+ + L VR G+ ++G P
Sbjct: 196 VFRAVRRRLPAVPASLAASSGIFLGPDFHFDLVRPGAALYGIAP 239
>gi|13473409|ref|NP_104976.1| alanine racemase [Mesorhizobium loti MAFF303099]
gi|20137427|sp|Q98F05|ALR2_RHILO RecName: Full=Alanine racemase, catabolic
gi|14024158|dbj|BAB50762.1| alanine racemase [Mesorhizobium loti MAFF303099]
Length = 381
Score = 37.3 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 25/130 (19%)
Query: 106 ASLLSLEMI--KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI 163
A L + R LP IQV++G + G+ P + + ++++ +M
Sbjct: 126 AQLKAWRAAVHDAGRRLPAAIQVDSGM--SRLGMAPAEVEALAGDSSAFDGIDIKYVMSH 183
Query: 164 --------PPAMGNPKPHFYLLSEIARECKLTKLS-----MGMTRDFELAIASGATSVRI 210
PA + F L + + + +G + +LA R
Sbjct: 184 LACADEPRHPANEQQRLAFERLRAMLPRAPASLANSSGIFLGPSYHHDLA--------RP 235
Query: 211 GSGIFGERPC 220
G+ ++G P
Sbjct: 236 GAALYGINPT 245
>gi|254560913|ref|YP_003068008.1| diaminopimelate decarboxylase [Methylobacterium extorquens DM4]
gi|254268191|emb|CAX24106.1| diaminopimelate decarboxylase [Methylobacterium extorquens DM4]
Length = 422
Score = 37.3 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 16/101 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E + LS + + R PV I+VN TG K GI ++ +
Sbjct: 124 VESEPELAALSEVAVARGRKAPVSIRVNPDVDALTHAKISTGKSDNKFGIPISRARAVYA 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHF---YLLSEIAREC 184
+ L + G+ I + + P LL E+AR+
Sbjct: 184 GAARLPGLEIVGVDAHIGSQITDLTPFDNAARLLCELARDL 224
>gi|114561631|ref|YP_749144.1| diaminopimelate decarboxylase [Shewanella frigidimarina NCIMB 400]
gi|114332924|gb|ABI70306.1| diaminopimelate decarboxylase [Shewanella frigidimarina NCIMB 400]
Length = 414
Score = 37.3 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 13/94 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L+ + + PV +++N + K GI + +
Sbjct: 124 VESSAELEQLNEVASRLGKVAPVSLRINPDVDAGTHPYISTGLKENKFGIAMEEAEVVFA 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEI 180
+ L+V+G+ C I + KP + +
Sbjct: 184 RAAELAHLHVKGVDCHIGSQLTEIKPFLDAMDRM 217
>gi|308178610|ref|YP_003918016.1| alanine racemase-like protein [Arthrobacter arilaitensis Re117]
gi|307746073|emb|CBT77045.1| alanine racemase-like protein [Arthrobacter arilaitensis Re117]
Length = 366
Score = 37.3 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ ++ + ++ + + I++++G+ +SG+ P + R + V G+
Sbjct: 111 DSVEAVEQMAKMLGEKVSKVKLIIEIDSGH--HRSGVSPQGAVEIAEAARAV-GMRVHGV 167
Query: 161 MCIPPAMGNPKPHFYLLSE----------IARECK--LTKLSMGMTRDFELAIASGATSV 208
P P+ L++ + R+ + ++S G T EL+ + T V
Sbjct: 168 FTFPGHSYAPEGIDAALNDEHKALAEAACLLRDAGHTIKRISGGSTPTAELSDNAVLTEV 227
Query: 209 RIGSGIFGE 217
R G +FG+
Sbjct: 228 RPGVYVFGD 236
>gi|257056970|ref|YP_003134802.1| diaminopimelate decarboxylase [Saccharomonospora viridis DSM 43017]
gi|256586842|gb|ACU97975.1| diaminopimelate decarboxylase [Saccharomonospora viridis DSM 43017]
Length = 479
Score = 37.3 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 33/126 (26%), Gaps = 28/126 (22%)
Query: 88 SEIVSLFDVIET------VSREKTASLLSLEMIKQSRFLPVYIQV------------NTG 129
+ L +E + + L+ + V ++V T
Sbjct: 144 KSLAELEAAVEAGVGLVVLDSYYEIARLAEIAQRHGVVQQVLVRVTVGVEAHTHEFIATA 203
Query: 130 YEIQKSGIMPN--QTKDFVILCRQKYQLNVEGL--------MCIPPAMGNPKPHFYLLSE 179
+E QK G + V L + GL + LL+E
Sbjct: 204 HEDQKFGFSLASGDAAEAVRRVLNSPSLKLVGLHSHIGSQIFDTDGFEVAARRVVGLLAE 263
Query: 180 IARECK 185
+ +E
Sbjct: 264 LRKEHG 269
>gi|77359070|ref|YP_338645.1| diaminopimelate decarboxylase [Pseudoalteromonas haloplanktis
TAC125]
gi|76873981|emb|CAI85202.1| putative diaminopimelate decarboxylase [Pseudoalteromonas
haloplanktis TAC125]
Length = 417
Score = 37.3 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 13/94 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V +S + + P+ I+VN + K GI
Sbjct: 124 VESVSELERISEVACELNLAAPISIRVNPDIDAKTHPYISTGLKENKFGIDIQTAVSVYQ 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEI 180
LN+ G+ C I + +P L ++
Sbjct: 184 HAASLPGLNIIGVDCHIGSQLTETRPFLEALDKL 217
>gi|296165533|ref|ZP_06848062.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295899111|gb|EFG78588.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 390
Score = 37.3 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVA 32
M + + Q+I + R + +VA
Sbjct: 214 MLTPDAVADAVQRIRTACERIGRDPAEIRIVA 245
>gi|300702820|ref|YP_003744421.1| diaminopimelate decarboxylase [Ralstonia solanacearum CFBP2957]
gi|299070482|emb|CBJ41777.1| Diaminopimelate decarboxylase [Ralstonia solanacearum CFBP2957]
Length = 419
Score = 37.3 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 20/75 (26%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L+ + PV ++VN + K GI +
Sbjct: 125 VESIPELHRLNEVAGSLGKTAPVSLRVNPDVDAKTHPYISTGLKGNKFGIAFEEVLPTYR 184
Query: 148 LCRQKYQLNVEGLMC 162
L V G+ C
Sbjct: 185 AAAAMPNLRVVGIDC 199
>gi|299065455|emb|CBJ36624.1| Diaminopimelate decarboxylase [Ralstonia solanacearum CMR15]
Length = 419
Score = 37.3 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 20/75 (26%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L+ + PV ++VN + K GI +
Sbjct: 125 VESIPELHRLNEVAGSLGKTAPVSLRVNPDVDAKTHPYISTGLKGNKFGIAFEEVLPTYR 184
Query: 148 LCRQKYQLNVEGLMC 162
L V G+ C
Sbjct: 185 AAAAMPNLRVVGIDC 199
>gi|187479845|ref|YP_787870.1| low-specificity D-threonine aldolase [Bordetella avium 197N]
gi|115424432|emb|CAJ50985.1| low-specificity D-threonine aldolase [Bordetella avium 197N]
Length = 337
Score = 37.3 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 3/75 (4%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKDFVILCRQKYQLNVE 158
V L+ + + + V ++V+ G + G+ + L
Sbjct: 83 VDNMSNLHALAAAVAQVGARITVLVEVDVGQ--GRCGVTDDHDVLALARAAEAMQGLRFG 140
Query: 159 GLMCIPPAMGNPKPH 173
GL AM + + H
Sbjct: 141 GLQAYHGAMQHVRSH 155
>gi|291277443|ref|YP_003517215.1| alanine racemase [Helicobacter mustelae 12198]
gi|290964637|emb|CBG40491.1| alanine racemase [Helicobacter mustelae 12198]
Length = 342
Score = 37.3 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 13/98 (13%)
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
+L VI + + P +++ + ++GI P + + + Q
Sbjct: 88 NLHPVIHSNQNLDLLAS------------PCSVELKINIGMNRNGIAPRELESMITKILQ 135
Query: 152 KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKL 189
K L + G+ + F +I +E K L
Sbjct: 136 KD-LGLFGVFAHNGYGDDLMEDFQNGQQIFQEIKEQTL 172
>gi|206603563|gb|EDZ40043.1| Alanine racemase [Leptospirillum sp. Group II '5-way CG']
Length = 406
Score = 37.3 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 66/188 (35%), Gaps = 35/188 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
+L N L+ + ++ S+ ++ V K A G + A+N ++
Sbjct: 29 ALSNNLEWIRSRL----------PSSIEILPVVK-------ADAYGHGMLPVAKNFVEMG 71
Query: 62 KKKWIPLRKEWDVQLR---------FIGSLQSNKVSEIVS--LFDVIETVSREKTASLLS 110
+ E V+LR +G + +++ E +S L VI + A L+
Sbjct: 72 VPALGVMGLEEGVRLRKAEISAKVIVMGGILPSELEECISCGLTPVIHNCELLEAALDLA 131
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
R + V+I + + + G +P + + +EG+M P N
Sbjct: 132 -------RKMEVHIHLKFDVGMGRLGFLPEDISWVCDKIEMEPSIRIEGVMSHFPEGENI 184
Query: 171 KPHFYLLS 178
++
Sbjct: 185 SETSRQIA 192
>gi|20137517|sp|Q9KSE5|ALR2_VIBCH RecName: Full=Alanine racemase 2
Length = 392
Score = 37.3 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 13/127 (10%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIP 164
A L+ + + L V+I +N G + M + K + + L+V G+M
Sbjct: 131 ALDLAELAKQSGKTLKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHF 190
Query: 165 PAMGNPKPHFYLLSEIAR---------ECKLTKLSMGMTRDFEL--AIASGATSVRIGSG 213
P N L++ K ++++ + + + VR G
Sbjct: 191 PNY-NADEVRAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGV 249
Query: 214 IFGERPC 220
+FG+ P
Sbjct: 250 LFGDLPT 256
>gi|121586566|ref|ZP_01676352.1| alanine racemase, putative [Vibrio cholerae 2740-80]
gi|121726850|ref|ZP_01680062.1| alanine racemase, putative [Vibrio cholerae V52]
gi|147673980|ref|YP_001216876.1| alanine racemase [Vibrio cholerae O395]
gi|153819283|ref|ZP_01971950.1| alanine racemase, putative [Vibrio cholerae NCTC 8457]
gi|153822911|ref|ZP_01975578.1| alanine racemase, putative [Vibrio cholerae B33]
gi|227081483|ref|YP_002810034.1| alanine racemase, putative [Vibrio cholerae M66-2]
gi|229505102|ref|ZP_04394612.1| alanine racemase [Vibrio cholerae BX 330286]
gi|229511228|ref|ZP_04400707.1| alanine racemase [Vibrio cholerae B33]
gi|229518346|ref|ZP_04407790.1| alanine racemase [Vibrio cholerae RC9]
gi|229608106|ref|YP_002878754.1| alanine racemase [Vibrio cholerae MJ-1236]
gi|254848434|ref|ZP_05237784.1| alanine racemase [Vibrio cholerae MO10]
gi|298498598|ref|ZP_07008405.1| alanine racemase [Vibrio cholerae MAK 757]
gi|9655801|gb|AAF94470.1| alanine racemase, putative [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121549245|gb|EAX59277.1| alanine racemase, putative [Vibrio cholerae 2740-80]
gi|121630754|gb|EAX63139.1| alanine racemase, putative [Vibrio cholerae V52]
gi|126510186|gb|EAZ72780.1| alanine racemase, putative [Vibrio cholerae NCTC 8457]
gi|126519563|gb|EAZ76786.1| alanine racemase, putative [Vibrio cholerae B33]
gi|146315863|gb|ABQ20402.1| putative alanine racemase [Vibrio cholerae O395]
gi|227009371|gb|ACP05583.1| alanine racemase, putative [Vibrio cholerae M66-2]
gi|227013229|gb|ACP09439.1| alanine racemase, putative [Vibrio cholerae O395]
gi|229345061|gb|EEO10035.1| alanine racemase [Vibrio cholerae RC9]
gi|229351193|gb|EEO16134.1| alanine racemase [Vibrio cholerae B33]
gi|229357325|gb|EEO22242.1| alanine racemase [Vibrio cholerae BX 330286]
gi|229370761|gb|ACQ61184.1| alanine racemase [Vibrio cholerae MJ-1236]
gi|254844139|gb|EET22553.1| alanine racemase [Vibrio cholerae MO10]
gi|297542931|gb|EFH78981.1| alanine racemase [Vibrio cholerae MAK 757]
Length = 428
Score = 37.3 bits (86), Expect = 1.7, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 13/127 (10%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIP 164
A L+ + + L V+I +N G + M + K + + L+V G+M
Sbjct: 167 ALDLAELAKQSGKTLKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHF 226
Query: 165 PAMGNPKPHFYLLSEIAR---------ECKLTKLSMGMTRDFEL--AIASGATSVRIGSG 213
P N L++ K ++++ + + + VR G
Sbjct: 227 PNY-NADEVRAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGV 285
Query: 214 IFGERPC 220
+FG+ P
Sbjct: 286 LFGDLPT 292
>gi|291166386|gb|EFE28432.1| alanine racemase [Filifactor alocis ATCC 35896]
Length = 388
Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 19/125 (15%), Positives = 46/125 (36%), Gaps = 13/125 (10%)
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPA 166
L+ +K + V+I++++G + G + N + + L+ +G+
Sbjct: 112 ALNNIALKHQKVANVHIKIDSGM--SRIGFLCNDMAIRDIKQLSRLDGLHFKGIFTHFAR 169
Query: 167 MGN-----PKPHFYLLSEIARECKLTKLSMGMTRDFELAI-----ASGATSVRIGSGIFG 216
+ FY+ S++ + + ++ + A VR+G +FG
Sbjct: 170 ADERDKFHTQKQFYVFSKLIQSLEKQNITFDIRHCCNTAATICYPEYHLDMVRLGIALFG 229
Query: 217 ERPCQ 221
P +
Sbjct: 230 YYPSK 234
>gi|188580974|ref|YP_001924419.1| diaminopimelate decarboxylase [Methylobacterium populi BJ001]
gi|179344472|gb|ACB79884.1| diaminopimelate decarboxylase [Methylobacterium populi BJ001]
Length = 422
Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 16/101 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E + LS + R PV I+VN TG K GI ++ +
Sbjct: 124 VESEPELAALSEVAASRGRKAPVSIRVNPDVDALTHAKISTGKSDNKFGIPISRARAVYA 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHF---YLLSEIAREC 184
+ L + G+ I + + P LL E+AR+
Sbjct: 184 GAARLPGLEIVGVDAHIGSQITDLTPFDNAARLLCELARDL 224
>gi|154245684|ref|YP_001416642.1| diaminopimelate decarboxylase [Xanthobacter autotrophicus Py2]
gi|154159769|gb|ABS66985.1| diaminopimelate decarboxylase [Xanthobacter autotrophicus Py2]
Length = 422
Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 16/101 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E + LS PV I+VN TG K GI ++ ++
Sbjct: 124 VESEPELAALSEVATAMGVSAPVSIRVNPDVDAKTHKKISTGKSATKFGIPISRAREVYD 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKPHF---YLLSEIAREC 184
+ L + G+ M I + + P LL+E+AR+
Sbjct: 184 YAARLPGLAITGVDMHIGSQITDMAPFDNAVTLLAELARDL 224
>gi|161582006|ref|NP_230956.2| alanine racemase [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|255745708|ref|ZP_05419656.1| alanine racemase [Vibrio cholera CIRS 101]
gi|262159017|ref|ZP_06030129.1| alanine racemase [Vibrio cholerae INDRE 91/1]
gi|262169374|ref|ZP_06037066.1| alanine racemase [Vibrio cholerae RC27]
gi|255736783|gb|EET92180.1| alanine racemase [Vibrio cholera CIRS 101]
gi|262022187|gb|EEY40896.1| alanine racemase [Vibrio cholerae RC27]
gi|262029202|gb|EEY47854.1| alanine racemase [Vibrio cholerae INDRE 91/1]
Length = 407
Score = 36.9 bits (85), Expect = 1.7, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 13/127 (10%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIP 164
A L+ + + L V+I +N G + M + K + + L+V G+M
Sbjct: 146 ALDLAELAKQSGKTLKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHF 205
Query: 165 PAMGNPKPHFYLLSEIAR---------ECKLTKLSMGMTRDFEL--AIASGATSVRIGSG 213
P N L++ K ++++ + + + VR G
Sbjct: 206 PNY-NADEVRAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGV 264
Query: 214 IFGERPC 220
+FG+ P
Sbjct: 265 LFGDLPT 271
>gi|311279308|ref|YP_003941539.1| alanine racemase [Enterobacter cloacae SCF1]
gi|308748503|gb|ADO48255.1| alanine racemase [Enterobacter cloacae SCF1]
Length = 356
Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 13/127 (10%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156
+ + + K +L+ + L VY++VN+G + G P + R +
Sbjct: 100 VHSNWQIK-----ALQNARLHAPLDVYVKVNSGM--NRLGFTPQRLHTAWQQLRALPNVG 152
Query: 157 VEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI----ASGATSVRIGS 212
LM P + +I + + ++ A + VR G
Sbjct: 153 DMTLMSHFADAEKPDGIREAMVQIEQAAEGLGCPRSLSN--SAATLWHPEAHFDWVRPGI 210
Query: 213 GIFGERP 219
++G P
Sbjct: 211 VLYGASP 217
>gi|290475457|ref|YP_003468345.1| alanine racemase 2, PLP-binding, catabolic [Xenorhabdus bovienii
SS-2004]
gi|289174778|emb|CBJ81579.1| alanine racemase 2, PLP-binding, catabolic [Xenorhabdus bovienii
SS-2004]
Length = 355
Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 18/129 (13%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156
+ + + K + + + +Y+++N+G + G P + V + +
Sbjct: 100 VHSYWQLKAIEE-----ARLNNPIDIYLKINSGM--NRLGFTPEEYSQVVSMANCIKNIK 152
Query: 157 VEGLMCIPPAMGNP---KPHFYLLSEIARECKLTKLSMGMTRD---FELAIASGATSVRI 210
LM N F ++ + K+ L + G VR
Sbjct: 153 SVTLMTHFANSDNEIGIDEQFAVVECL----KMDLLPRCLANSGAVLWHPKTHG-DWVRP 207
Query: 211 GSGIFGERP 219
G ++G P
Sbjct: 208 GIILYGASP 216
>gi|33151809|ref|NP_873162.1| alanine racemase [Haemophilus ducreyi 35000HP]
gi|71152228|sp|Q7VNC9|ALR_HAEDU RecName: Full=Alanine racemase
gi|33148030|gb|AAP95551.1| alanine racemase [Haemophilus ducreyi 35000HP]
Length = 374
Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 30/136 (22%)
Query: 87 VSEIVSLFD-VIETVSREKTASLLSLEMIKQSR------------FLPVYIQVNTGYEIQ 133
+ + FD VI + + + ++ E + + + ++++++TG
Sbjct: 89 LKTLSRGFDTVIHCLEQLELLEQVAKEWQIEQQKRFWQRKTKIYFPINIWLKIDTGM--H 146
Query: 134 KSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGM 193
+ GI P Q F + + M HF E+ +C T+ +
Sbjct: 147 RLGIHPEQVDLFYARLKSCPLVATISFMS----------HFSRADEL--DCGYTEQQIAT 194
Query: 194 TRDFELAIASGATSVR 209
FE+A + R
Sbjct: 195 ---FEMATEQYSAHSR 207
>gi|225850923|ref|YP_002731157.1| diaminopimelate decarboxylase [Persephonella marina EX-H1]
gi|225645958|gb|ACO04144.1| diaminopimelate decarboxylase [Persephonella marina EX-H1]
Length = 426
Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V E +L K ++ + + I+VN + K GI ++ +
Sbjct: 129 VESEMEIDVLDELAEKLNKTVRISIRVNPDVDPKTHPYISTGLRKSKFGIDIDEALNVYR 188
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
+K ++V G +M I P + + L+ + +E +L +G
Sbjct: 189 KAVKKKNIDVIGIHCHIGSQIMEISPYVEAVEKTAELVFRLKKEGIELQHFDIG 242
>gi|225026346|ref|ZP_03715538.1| hypothetical protein EUBHAL_00588 [Eubacterium hallii DSM 3353]
gi|224956356|gb|EEG37565.1| hypothetical protein EUBHAL_00588 [Eubacterium hallii DSM 3353]
Length = 390
Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 11/99 (11%)
Query: 98 ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLN 156
+T+ TA +S +K + ++I ++TG + G+ P++ V + +
Sbjct: 117 QTIYCYDTAKAMSEAAVKAEKTARIHIALDTGM--TRIGLSPDEKGLAIVKQIAELPNIK 174
Query: 157 VEGL--------MCIPPAMGNPKPHFYLLSEIARECKLT 187
+EGL M + + ++ E +
Sbjct: 175 IEGLFTHLSCADMTDKAYTESQMERYDHFVQLLDEAGIE 213
>gi|166030547|ref|ZP_02233376.1| hypothetical protein DORFOR_00208 [Dorea formicigenerans ATCC
27755]
gi|166029709|gb|EDR48466.1| hypothetical protein DORFOR_00208 [Dorea formicigenerans ATCC
27755]
Length = 408
Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156
+ T+ K LL + +++ + I+V +G + GI + D V +
Sbjct: 108 VYTIESRKHLELLEMCAKEENITIHALIRVTSG---NQFGIDEEEVFDIVSKKDYYPHVR 164
Query: 157 VEGLMCIPPAMGNPKPHFYLLSEIARECKL 186
+EG+ C S+I +E
Sbjct: 165 IEGIQCYSGTQK------KKFSKIEKELHW 188
>gi|169245600|gb|ACA50846.1| LysA [Agrobacterium tumefaciens]
gi|169245618|gb|ACA50855.1| LysA [Agrobacterium tumefaciens]
gi|169245632|gb|ACA50862.1| LysA [Agrobacterium tumefaciens]
Length = 180
Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIA 181
++TG + K GI + + + V G+ M I + +P F LL E+
Sbjct: 17 ISTGKKENKFGISYERARAVYAHAATLPGIEVTGIDMHIGSQITELQPFEDAFRLLRELV 76
Query: 182 RECKLT 187
+
Sbjct: 77 EALRTD 82
>gi|310823824|ref|YP_003956182.1| diaminopimelate decarboxylase [Stigmatella aurantiaca DW4/3-1]
gi|309396896|gb|ADO74355.1| Diaminopimelate decarboxylase [Stigmatella aurantiaca DW4/3-1]
Length = 413
Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 14/116 (12%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------ 132
+G Q + + + V + L + R P ++VN +
Sbjct: 104 VGKTQEEMARALAAGILLFN-VESAEELEALDAVGRQAGRRAPFGLRVNPDVDARTHRYI 162
Query: 133 ------QKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIA 181
K G+ + R+ + G+ C I + P LS++A
Sbjct: 163 STGLKTSKFGVPFEEAVALYARARKMKGVRALGVDCHIGSQLTRTAPVKAALSKVA 218
>gi|110803655|ref|YP_698455.1| alanine racemase [Clostridium perfringens SM101]
gi|110684156|gb|ABG87526.1| putative alanine racemase [Clostridium perfringens SM101]
Length = 350
Score = 36.9 bits (85), Expect = 1.8, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 95 DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKY 153
++I T+ E+ + L E K+ V+I V+TG + GI PN+ F+ + +
Sbjct: 93 NLILTLDNEEILNELDKETKKR-----VHIYVDTGM--NRMGIKPNKLDSFIERVKNEFP 145
Query: 154 QLNVEGLMC 162
L ++G+
Sbjct: 146 NLEIDGIYT 154
>gi|254700123|ref|ZP_05161951.1| Alr, alanine racemase [Brucella suis bv. 5 str. 513]
gi|261750615|ref|ZP_05994324.1| alanine racemase [Brucella suis bv. 5 str. 513]
gi|261740368|gb|EEY28294.1| alanine racemase [Brucella suis bv. 5 str. 513]
Length = 399
Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 33/240 (13%), Positives = 70/240 (29%), Gaps = 50/240 (20%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + +I + AV K + + ++ A G F
Sbjct: 27 ALRHNYSAIATRIAPTRTA-----------AVVKADAYGLGASRVAPAFYEAGCRDFFVA 75
Query: 54 --AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
E + + D L + LQ + ++ ++ + +
Sbjct: 76 HLGE-------AVALKPFLKPDATLYVLNGLQPGTEAAYARE-GILPVLNSLEQVENWAA 127
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI-------- 163
+ + LP +Q +TG + G+ + + +++++ I
Sbjct: 128 LATRLGKKLPALLQFDTGM--SRLGLSAKEFDRLLENVTLLSRIDIK--FAISHLANGDE 183
Query: 164 PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT----SVRIGSGIFGERP 219
P N + + + +AR KL F G T R G ++G P
Sbjct: 184 PGNAANARQLAKMTALLARLPKLPAALANSGGTFL-----GKTYYFDLARPGIALYGIDP 238
>gi|83269232|ref|YP_418523.1| alanine racemase [Brucella melitensis biovar Abortus 2308]
gi|20531982|sp|Q8YD03|ALR_BRUME RecName: Full=Alanine racemase
gi|123545437|sp|Q2YIU9|ALR_BRUA2 RecName: Full=Alanine racemase
gi|82939506|emb|CAJ12478.1| Alanine racemase:Protein of unknown function
UPF0001:ATP/GTP-binding site motif A (P-loop) [Brucella
melitensis biovar Abortus 2308]
Length = 396
Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 53/169 (31%), Gaps = 35/169 (20%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + +I + AV K + + ++ A G F
Sbjct: 24 ALRHNYSAIATRIAPTRTA-----------AVVKADAYGLGASRVAPAFYEAGCRDFFVA 72
Query: 54 --AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS--LFDVIETVSREKTASLL 109
E + + D L + LQ + + V+ ++ + + + L
Sbjct: 73 HLGE-------AVALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAAL 125
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
+ + LP +Q +TG + G+ + + +++++
Sbjct: 126 ---ATRLGKKLPALLQFDTGM--SRLGLSAKEFDRLLENVTLLSRIDIK 169
>gi|89092607|ref|ZP_01165560.1| alanine racemase [Oceanospirillum sp. MED92]
gi|89083119|gb|EAR62338.1| alanine racemase [Oceanospirillum sp. MED92]
Length = 358
Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 55/138 (39%), Gaps = 23/138 (16%)
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
+L+ + ++++ + K + +++++++G + G+ P+ ++
Sbjct: 96 NLWCAVHSLAQIDIIA-----AAKIDTPIKIWLKMDSGM--HRLGVAPDDYQEAYQRLND 148
Query: 152 KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL-TKLSMGMTRDFELAIASGATSV-- 208
Q+ LM + P L+ A + L K++ G+ D LA ++G T
Sbjct: 149 LTQVKEVVLMTHFSSADEPD-----LAVTAEQIALFDKVTQGIEADVSLANSAG-TMAYP 202
Query: 209 -------RIGSGIFGERP 219
R G ++G P
Sbjct: 203 EARRSWQRPGIMLYGATP 220
>gi|225686682|ref|YP_002734654.1| alanine racemase [Brucella melitensis ATCC 23457]
gi|225642787|gb|ACO02700.1| alanine racemase [Brucella melitensis ATCC 23457]
Length = 396
Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 53/169 (31%), Gaps = 35/169 (20%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + +I + AV K + + ++ A G F
Sbjct: 24 ALRHNYSAIATRIAPTRTA-----------AVVKADAYGLGASRVAPAFYEAGCRDFFVA 72
Query: 54 --AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS--LFDVIETVSREKTASLL 109
E + + D L + LQ + + V+ ++ + + + L
Sbjct: 73 HLGE-------AVALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAAL 125
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
+ + LP +Q +TG + G+ + + +++++
Sbjct: 126 ---ATRLGKKLPALLQFDTGM--SRLGLSAKEFDRLLENVTLLSRIDIK 169
>gi|260655042|ref|ZP_05860530.1| diaminopimelate decarboxylase [Jonquetella anthropi E3_33 E1]
gi|260630153|gb|EEX48347.1| diaminopimelate decarboxylase [Jonquetella anthropi E3_33 E1]
Length = 452
Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 21/118 (17%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V LL + + ++V+ T + K G P Q V
Sbjct: 150 VDSADELELLGRLAKNEKTPPKILLRVSPGIAAGAHHAIQTATDDCKFGFSPAQLVHAVK 209
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFY-------LLSEIARECKLTKLSMGMTRDF 197
+ + GL + + +P F LL+ + C M + F
Sbjct: 210 RAADLP-VVLAGLHVHLGSQIDRLEPFFEGVQTMVDLLASLKNACGFEADEMDLGGGF 266
>gi|163736245|ref|ZP_02143664.1| Orn/DAP/Arg decarboxylase 2 [Phaeobacter gallaeciensis BS107]
gi|161390115|gb|EDQ14465.1| Orn/DAP/Arg decarboxylase 2 [Phaeobacter gallaeciensis BS107]
Length = 828
Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 11/72 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN-----------TGYEIQKSGIMPNQTKDFVIL 148
V + + +Q R + ++VN + GI ++ D +
Sbjct: 117 VESAYELTQIDALARQQGRVQNIALRVNPDFHAGGAKLNMSGRPTQFGIDQSELPDVLKQ 176
Query: 149 CRQKYQLNVEGL 160
QL + GL
Sbjct: 177 AEGCAQLRLCGL 188
>gi|149182358|ref|ZP_01860835.1| hypothetical protein BSG1_12916 [Bacillus sp. SG-1]
gi|148849900|gb|EDL64073.1| hypothetical protein BSG1_12916 [Bacillus sp. SG-1]
Length = 275
Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 4/101 (3%)
Query: 95 DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ 154
D I +R + + + + + T E + P +
Sbjct: 117 DFIHLQTRSPLVKRDIDLFKQFGDKIRISMTIETDKEEVRKAFSPA-APPIPARMAALKE 175
Query: 155 LNVEGLMC---IPPAMGNPKPHFYLLSEIARECKLTKLSMG 192
+ G+M I P + + L +IA+ + MG
Sbjct: 176 ITEAGIMTQATIAPLLPCSREFPSKLKQIAKRITIDDFWMG 216
>gi|311104417|ref|YP_003977270.1| D-serine deaminase 1 [Achromobacter xylosoxidans A8]
gi|310759106|gb|ADP14555.1| D-serine deaminase 1 [Achromobacter xylosoxidans A8]
Length = 423
Score = 36.9 bits (85), Expect = 1.9, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 3/95 (3%)
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCR 150
F V A+ L +Q LPV I+ G + ++G+ Q + V
Sbjct: 137 PAFTFFCIVDSPTNAAQLGAYFGEQGLILPVLIE--LGPQGGRTGVRDDAQLQALVEEIG 194
Query: 151 QKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK 185
+ L + G+ + L +
Sbjct: 195 KWPGLALAGIEVYEGVLQEENAIRAFLRRATDSLR 229
>gi|297818370|ref|XP_002877068.1| rock-N-rollers [Arabidopsis lyrata subsp. lyrata]
gi|297322906|gb|EFH53327.1| rock-N-rollers [Arabidopsis lyrata subsp. lyrata]
Length = 1131
Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 4 GNKLQVFKQKIE----NSAILAKRPKDSVSLVAVSKMVD-SKKIRVALS---CGQVIFAE 55
G L+ +I+ N + + P SV L+AVS + + + L G F E
Sbjct: 175 GAALEAIVSRIKILSSNHELRSS-PLASVRLLAVSATIPNIEDLAEWLKVPTAGIKRFGE 233
>gi|312795814|ref|YP_004028736.1| Diaminopimelate decarboxylase [Burkholderia rhizoxinica HKI 454]
gi|312167589|emb|CBW74592.1| Diaminopimelate decarboxylase (EC 4.1.1.20) [Burkholderia
rhizoxinica HKI 454]
Length = 420
Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 25/194 (12%), Positives = 49/194 (25%), Gaps = 68/194 (35%)
Query: 20 LAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFI 79
A V V K + +R+AL G F N
Sbjct: 92 AAGGKPHDVVFSGVGKN--AADMRMALEAGVRCF--N----------------------- 124
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE-------- 131
V + L+ + R P+ ++VN +
Sbjct: 125 --------------------VESLAELARLNQIAGESGRIAPISLRVNPDVDAKTHPYIS 164
Query: 132 ----IQKSGIMPNQTKDFVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSE 179
K G+ + + + + G+ C I P + L+++
Sbjct: 165 TGLKANKFGVAFDDARAAYRTALGMKHVRIAGIDCHIGSQITEISPYLDAIDKVLELVAQ 224
Query: 180 I-ARECKLTKLSMG 192
+ A + + +G
Sbjct: 225 VEADGAPIDHIDVG 238
>gi|256015684|ref|YP_003105693.1| alanine racemase [Brucella microti CCM 4915]
gi|255998344|gb|ACU50031.1| alanine racemase [Brucella microti CCM 4915]
Length = 396
Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 53/169 (31%), Gaps = 35/169 (20%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + +I + AV K + + ++ A G F
Sbjct: 24 ALRHNYSAIATRIAPTRTA-----------AVVKADAYGLGASRVAPAFYEAGCRDFFVA 72
Query: 54 --AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS--LFDVIETVSREKTASLL 109
E + + D L + LQ + + V+ ++ + + + L
Sbjct: 73 HLGE-------AVALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAAL 125
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
+ + LP +Q +TG + G+ + + +++++
Sbjct: 126 ---ATRLGKKLPALLQFDTGM--SRLGLSAKEFDRLLENVTLLSRIDIK 169
>gi|220921674|ref|YP_002496975.1| diaminopimelate decarboxylase [Methylobacterium nodulans ORS 2060]
gi|219946280|gb|ACL56672.1| diaminopimelate decarboxylase [Methylobacterium nodulans ORS 2060]
Length = 430
Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 13/86 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E + LS R PV I+VN TG K GI ++ ++
Sbjct: 124 VESEPELAALSEVAQGLGRDAPVSIRVNPDVDARTHAKISTGKSENKFGIPISRAREVYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP 172
L + G+ M I + + P
Sbjct: 184 RAATLPGLRLAGVDMHIGSQITDLAP 209
>gi|17988719|ref|NP_541352.1| alanine racemase, catabolic [Brucella melitensis bv. 1 str. 16M]
gi|62317251|ref|YP_223104.1| alanine racemase [Brucella abortus bv. 1 str. 9-941]
gi|189022512|ref|YP_001932253.1| Alr, alanine racemase [Brucella abortus S19]
gi|237816811|ref|ZP_04595803.1| alanine racemase [Brucella abortus str. 2308 A]
gi|254695937|ref|ZP_05157765.1| Alr, alanine racemase [Brucella abortus bv. 3 str. Tulya]
gi|254698537|ref|ZP_05160365.1| Alr, alanine racemase [Brucella abortus bv. 2 str. 86/8/59]
gi|254731984|ref|ZP_05190562.1| Alr, alanine racemase [Brucella abortus bv. 4 str. 292]
gi|256043789|ref|ZP_05446711.1| Alr, alanine racemase [Brucella melitensis bv. 1 str. Rev.1]
gi|256111166|ref|ZP_05452202.1| Alr, alanine racemase [Brucella melitensis bv. 3 str. Ether]
gi|260544489|ref|ZP_05820310.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260564974|ref|ZP_05835459.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|260759757|ref|ZP_05872105.1| alanine racemase [Brucella abortus bv. 4 str. 292]
gi|260762996|ref|ZP_05875328.1| alanine racemase [Brucella abortus bv. 2 str. 86/8/59]
gi|261216365|ref|ZP_05930646.1| alanine racemase [Brucella abortus bv. 3 str. Tulya]
gi|265990216|ref|ZP_06102773.1| alanine racemase [Brucella melitensis bv. 1 str. Rev.1]
gi|265992677|ref|ZP_06105234.1| alanine racemase [Brucella melitensis bv. 3 str. Ether]
gi|17984530|gb|AAL53616.1| alanine racemase, catabolic [Brucella melitensis bv. 1 str. 16M]
gi|62197444|gb|AAX75743.1| Alr, alanine racemase [Brucella abortus bv. 1 str. 9-941]
gi|189021086|gb|ACD73807.1| Alr, alanine racemase [Brucella abortus S19]
gi|237787624|gb|EEP61840.1| alanine racemase [Brucella abortus str. 2308 A]
gi|260097760|gb|EEW81634.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
gi|260152617|gb|EEW87710.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
gi|260670075|gb|EEX57015.1| alanine racemase [Brucella abortus bv. 4 str. 292]
gi|260673417|gb|EEX60238.1| alanine racemase [Brucella abortus bv. 2 str. 86/8/59]
gi|260917972|gb|EEX84833.1| alanine racemase [Brucella abortus bv. 3 str. Tulya]
gi|262763547|gb|EEZ09579.1| alanine racemase [Brucella melitensis bv. 3 str. Ether]
gi|263000885|gb|EEZ13575.1| alanine racemase [Brucella melitensis bv. 1 str. Rev.1]
Length = 399
Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 53/169 (31%), Gaps = 35/169 (20%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + +I + AV K + + ++ A G F
Sbjct: 27 ALRHNYSAIATRIAPTRTA-----------AVVKADAYGLGASRVAPAFYEAGCRDFFVA 75
Query: 54 --AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS--LFDVIETVSREKTASLL 109
E + + D L + LQ + + V+ ++ + + + L
Sbjct: 76 HLGE-------AVALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAAL 128
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
+ + LP +Q +TG + G+ + + +++++
Sbjct: 129 ---ATRLGKKLPALLQFDTGM--SRLGLSAKEFDRLLENVTLLSRIDIK 172
>gi|325266603|ref|ZP_08133280.1| diaminopimelate decarboxylase [Kingella denitrificans ATCC 33394]
gi|324982046|gb|EGC17681.1| diaminopimelate decarboxylase [Kingella denitrificans ATCC 33394]
Length = 407
Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 20/102 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V ++ + + PV +++N + K GI +
Sbjct: 115 VESLPELDRINAVAQRLGKTAPVSLRINPDVDAKTHPYISTGLKANKFGIAMADAEQAYR 174
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIA 181
+ L + G LM + P + + L +A
Sbjct: 175 HAGSLHHLRIVGIDCHIGSQLMDLSPLIEACERLLQLTDRLA 216
>gi|261856756|ref|YP_003264039.1| diaminopimelate decarboxylase [Halothiobacillus neapolitanus c2]
gi|261837225|gb|ACX96992.1| diaminopimelate decarboxylase [Halothiobacillus neapolitanus c2]
Length = 430
Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V E + +S P+ ++VN + K G+ Q
Sbjct: 130 VESEAELARISEVAAGLGVVAPISLRVNPDVDAKTHPYISTGLKDNKFGVPIEQAPALYR 189
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
+ L G+ C + P + LL + +L L +G
Sbjct: 190 HIARDANLKAVGIDCHIGSQITDVSPFADAARRVLALLDTLVLEGIELAHLDLG 243
>gi|225022820|ref|ZP_03712012.1| hypothetical protein CORMATOL_02865 [Corynebacterium matruchotii
ATCC 33806]
gi|224944427|gb|EEG25636.1| hypothetical protein CORMATOL_02865 [Corynebacterium matruchotii
ATCC 33806]
Length = 452
Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 21/77 (27%), Gaps = 14/77 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDF-- 145
+ + L + R V I+V T +E QK G
Sbjct: 142 LDSHQEIEDLHAIATELGRTQDVLIRVKPGIDAHTHEFISTAHEDQKFGFSLASGSALKA 201
Query: 146 VILCRQKYQLNVEGLMC 162
+ L + GL C
Sbjct: 202 ARRVVELPNLRLIGLHC 218
>gi|256262185|ref|ZP_05464717.1| alanine racemase [Brucella melitensis bv. 2 str. 63/9]
gi|263091881|gb|EEZ16203.1| alanine racemase [Brucella melitensis bv. 2 str. 63/9]
gi|326411074|gb|ADZ68138.1| Alr, alanine racemase [Brucella melitensis M28]
gi|326554365|gb|ADZ89004.1| Alr, alanine racemase [Brucella melitensis M5-90]
Length = 399
Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 53/169 (31%), Gaps = 35/169 (20%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + +I + AV K + + ++ A G F
Sbjct: 27 ALRHNYSAIATRIAPTRTA-----------AVVKADAYGLGASRVAPAFYEAGCRDFFVA 75
Query: 54 --AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS--LFDVIETVSREKTASLL 109
E + + D L + LQ + + V+ ++ + + + L
Sbjct: 76 HLGE-------AVALKPFLKPDATLYVLNGLQPGTEAACAREGILPVLNSLEQVENWAAL 128
Query: 110 SLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
+ + LP +Q +TG + G+ + + +++++
Sbjct: 129 ---ATRLGKKLPALLQFDTGM--SRLGLSAKEFDRLLENVTLLSRIDIK 172
>gi|108798118|ref|YP_638315.1| alanine racemase [Mycobacterium sp. MCS]
gi|119867214|ref|YP_937166.1| alanine racemase [Mycobacterium sp. KMS]
gi|126433776|ref|YP_001069467.1| alanine racemase [Mycobacterium sp. JLS]
gi|108768537|gb|ABG07259.1| alanine racemase [Mycobacterium sp. MCS]
gi|119693303|gb|ABL90376.1| alanine racemase [Mycobacterium sp. KMS]
gi|126233576|gb|ABN96976.1| alanine racemase [Mycobacterium sp. JLS]
Length = 383
Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 25/113 (22%)
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQK---YQLNVEGLMCIPPAMGNP-----KPHFYLL 177
V + ++G+ P + + + + V G+M P L
Sbjct: 132 VKADTGLSRNGVSPAEYPALLQRLAKAQAEDAVRVRGIMSHLACGDEPDNPTNDRQAQRL 191
Query: 178 SEIARECKLTKLSMGMTRDFELAIASGA-----------TSVRIGSGIFGERP 219
+++ R+ FE+A + VR G ++G+ P
Sbjct: 192 TDMRRQA------ADAGVTFEVAHLCNSPAAMTRPDLAFDMVRPGIAVYGQTP 238
>gi|70733296|ref|YP_263070.1| diaminopimelate decarboxylase [Pseudomonas fluorescens Pf-5]
gi|68347595|gb|AAY95201.1| diaminopimelate decarboxylase [Pseudomonas fluorescens Pf-5]
Length = 415
Score = 36.9 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + L L + PV ++VN + K GI +D I
Sbjct: 124 VESAEELERLQLVAAELGVRAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIATAEDVYI 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
Q L + G+ C I + +P L +
Sbjct: 184 RAAQLPNLEIVGVDCHIGSQLTTLEPFIDALDRLLD 219
>gi|226939283|ref|YP_002794354.1| DadB [Laribacter hongkongensis HLHK9]
gi|254802367|sp|C1DBE8|ALR_LARHH RecName: Full=Alanine racemase
gi|226714207|gb|ACO73345.1| DadB [Laribacter hongkongensis HLHK9]
Length = 359
Score = 36.9 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 6/104 (5%)
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNP--KPHFY 175
L V +++NTG + G P++ + + + + GLM A G+P
Sbjct: 118 PLEVMLKLNTGM--NRLGFRPDEAPRAAAWLQARNDIRLAGLMTHFATADGDPGIAAQLS 175
Query: 176 LLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
E+ L AS VR G ++G P
Sbjct: 176 RFDEVNASLGLPSCVANSAALMRHP-ASRRQYVRPGIMLYGASP 218
>gi|163852839|ref|YP_001640882.1| Orn/DAP/Arg decarboxylase 2 [Methylobacterium extorquens PA1]
gi|163664444|gb|ABY31811.1| Orn/DAP/Arg decarboxylase 2 [Methylobacterium extorquens PA1]
Length = 431
Score = 36.9 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 12/83 (14%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVN-----------TGYEIQKSGIMPNQTKDF 145
I +RE+ ++ + + V ++VN G + G +
Sbjct: 136 IHLENREEIV-RVAAAAERHGVHVRVALRVNPGATAQGGAMRMGGKPSPFGFDEEDIEAA 194
Query: 146 VILCRQKYQLNVEGLMCIPPAMG 168
+ + +L + GL G
Sbjct: 195 IDTVEAEPRLRLIGLHLFAGTQG 217
>gi|226949300|ref|YP_002804391.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
A2 str. Kyoto]
gi|226842782|gb|ACO85448.1| alanine racemase, N-terminal domain protein [Clostridium botulinum
A2 str. Kyoto]
Length = 353
Score = 36.9 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 11/160 (6%)
Query: 24 PKDSVSLVAVSKMV-DSKKIRVAL-SCGQVIFAENKLQEAKKKWIPLR-KEWDVQLRFIG 80
K + +VAV+K + KI A+ I A++++ E KK + + + ++L +
Sbjct: 25 KKRGIKVVAVTKTFCGNPKIAKAIAEEEVDILADSRI-ENLKKLVHINLPKMLLRLPMV- 82
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
++V E+V D I VS T LS E IKQ++ + + ++ G ++++
Sbjct: 83 ----SQVEEVVKYAD-ISLVSDIITIRELSKEAIKQNKIHSIILMIDLG-DLREGIFNEE 136
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
+ V + + G+ G P + LS++
Sbjct: 137 EIYITVKEILDFKSIKLMGIGTNLSCYGGVIPTYENLSQL 176
>gi|149926604|ref|ZP_01914864.1| diaminopimelate decarboxylase [Limnobacter sp. MED105]
gi|149824533|gb|EDM83749.1| diaminopimelate decarboxylase [Limnobacter sp. MED105]
Length = 435
Score = 36.9 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 13/91 (14%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V E ++L K R V ++VN + K G+ N K
Sbjct: 138 VESEAEMERVALVAEKLQRKANVSLRVNPDVDAKTHPYISTGLKENKFGVSMNAAKRVYQ 197
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLL 177
LNV G+ C I + + P+F L
Sbjct: 198 FANAHPWLNVHGIDCHIGSQLTDASPYFDAL 228
>gi|242244000|ref|ZP_04798443.1| amino acid racemase [Staphylococcus epidermidis W23144]
gi|242232633|gb|EES34945.1| amino acid racemase [Staphylococcus epidermidis W23144]
Length = 353
Score = 36.9 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 27/180 (15%), Positives = 59/180 (32%), Gaps = 22/180 (12%)
Query: 48 CGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV-IETVSREKTA 106
G FAE++ L K+ + + + +++S ++ I+T T
Sbjct: 49 LGITHFAESR----LDNIEQL-KDLGITFTLLRPTVKADLEKMISRVEMSIQT--ELTTI 101
Query: 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL----MC 162
L+ + + V ++ + G++ +V + + + GL MC
Sbjct: 102 KKLNTLAKSLDIKHQIMLMV--DWKDGREGVLTYDVVRYVQEILKLSHIQLVGLAFNFMC 159
Query: 163 I---PPAMGNPK--PHFYLLSEIARECKLTKLSMGMTRDFELAIASG---ATSVRIGSGI 214
P + + F E K +S G + + + +RIG +
Sbjct: 160 FKSEAPNEKDVRMINKFIHDVESETHFKFRIISGGNSSMLPQTLYNHLDKINDLRIGEAL 219
>gi|237741584|ref|ZP_04572065.1| serine racemase [Fusobacterium sp. 4_1_13]
gi|229429232|gb|EEO39444.1| serine racemase [Fusobacterium sp. 4_1_13]
Length = 369
Score = 36.9 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 39/118 (33%), Gaps = 17/118 (14%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ + A ++ ++ + I V++G + + G+ F ++ L + G
Sbjct: 107 LDSLEAAIKINKIAETENIIINYTIIVDSG--LHRFGVSLKNLLAFAEKLKKLKYLKLRG 164
Query: 160 L-------------MCIPPAMGNPKPHFYLLSEIARECK--LTKLSMGMTRDFELAIA 202
+ I + + E+ + L ++ G T FE A+
Sbjct: 165 ISSHPGHVYSSTCEADIHQYVLDECETLRKAKELLEKEGYYLKYITSGSTPTFEEAVK 222
>gi|188582859|ref|YP_001926304.1| Orn/DAP/Arg decarboxylase 2 [Methylobacterium populi BJ001]
gi|179346357|gb|ACB81769.1| Orn/DAP/Arg decarboxylase 2 [Methylobacterium populi BJ001]
Length = 429
Score = 36.9 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 11/92 (11%), Positives = 27/92 (29%), Gaps = 12/92 (13%)
Query: 88 SEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN-----------TGYEIQKSG 136
+ I +RE+ ++ + + V +++N G + G
Sbjct: 125 RVVAGNIGEIHLENREEMV-RVAAAAERHGVTVRVALRINPGATAQGGAMRMGGKPSPFG 183
Query: 137 IMPNQTKDFVILCRQKYQLNVEGLMCIPPAMG 168
+ + + +L + GL G
Sbjct: 184 FDEEEMETAIDAVEAMPRLRLVGLHLFAGTQG 215
>gi|83591736|ref|YP_425488.1| diaminopimelate decarboxylase [Rhodospirillum rubrum ATCC 11170]
gi|83574650|gb|ABC21201.1| diaminopimelate decarboxylase [Rhodospirillum rubrum ATCC 11170]
Length = 425
Score = 36.9 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 30/104 (28%), Gaps = 16/104 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E LS + PV +++N TG + K GI
Sbjct: 124 VESEPELEALSEVAQALGKTAPVALRINPDVAAATHDKIATGRKENKFGIDWTVAPAIFA 183
Query: 148 LCRQKYQLNVEGLMC-IPP---AMGNPKPHFYLLSEIARECKLT 187
+ V+G+ I + + F L E+ +
Sbjct: 184 KAAGLPGIAVKGVAVHIGSQILDLDPFRRAFERLRELVLALRAD 227
>gi|88797197|ref|ZP_01112787.1| LysA [Reinekea sp. MED297]
gi|88780066|gb|EAR11251.1| LysA [Reinekea sp. MED297]
Length = 416
Score = 36.9 bits (85), Expect = 2.1, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V + L+ P+ ++VN + K G+ + F
Sbjct: 124 VESQAELERLNSVAGDMGIQAPISLRVNPDVDAKTHPYISTGLKQNKFGVDHRLARAFYQ 183
Query: 148 LCRQKYQLNVEGLMC-IP-------PAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
+ + V G+ C I P LL E+ ++ L + MG
Sbjct: 184 RANELQHIRVIGMDCHIGSQLLEAKPFEDAVDRLLTLLDELKQDGIALEHIDMG 237
>gi|331694412|ref|YP_004330651.1| alanine racemase domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326949101|gb|AEA22798.1| alanine racemase domain protein [Pseudonocardia dioxanivorans
CB1190]
Length = 374
Score = 36.9 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF 145
++ + D+ V + A L L + V +++++G +SG+ P + +
Sbjct: 112 RLRALAQRVDLRVGVDSPEAARHLGLALAGTGA--SVLVEIDSGMR--RSGVAPERAPEV 167
Query: 146 VILCRQKYQLNVEGLMCIP 164
+ L V G+ P
Sbjct: 168 ARAADRA-GLRVAGVFTFP 185
>gi|229515688|ref|ZP_04405147.1| alanine racemase [Vibrio cholerae TMA 21]
gi|229347457|gb|EEO12417.1| alanine racemase [Vibrio cholerae TMA 21]
Length = 428
Score = 36.9 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 13/127 (10%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIP 164
A L+ + + + V+I +N G + M + K + + L+V G+M
Sbjct: 167 ALDLAELAKQSGKTIKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHF 226
Query: 165 PAMGNPKPHFYLLSEIAR---------ECKLTKLSMGMTRDFEL--AIASGATSVRIGSG 213
P N L++ K ++++ + + + VR G
Sbjct: 227 PNY-NADEVRAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGV 285
Query: 214 IFGERPC 220
+FG+ P
Sbjct: 286 LFGDLPT 292
>gi|229521424|ref|ZP_04410843.1| alanine racemase [Vibrio cholerae TM 11079-80]
gi|229341522|gb|EEO06525.1| alanine racemase [Vibrio cholerae TM 11079-80]
Length = 428
Score = 36.9 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 13/127 (10%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIP 164
A L+ + + + V+I +N G + M + K + + L+V G+M
Sbjct: 167 ALDLAELAKQSGKTIKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHF 226
Query: 165 PAMGNPKPHFYLLSEIAR---------ECKLTKLSMGMTRDFEL--AIASGATSVRIGSG 213
P N L++ K ++++ + + + VR G
Sbjct: 227 PNY-NADEVRAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGV 285
Query: 214 IFGERPC 220
+FG+ P
Sbjct: 286 LFGDLPT 292
>gi|229525903|ref|ZP_04415308.1| alanine racemase [Vibrio cholerae bv. albensis VL426]
gi|229339484|gb|EEO04501.1| alanine racemase [Vibrio cholerae bv. albensis VL426]
Length = 428
Score = 36.9 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 13/127 (10%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIP 164
A L+ + + + V+I +N G + M + K + + L+V G+M
Sbjct: 167 ALDLAELAKQSGKTIKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHF 226
Query: 165 PAMGNPKPHFYLLSEIAR---------ECKLTKLSMGMTRDFEL--AIASGATSVRIGSG 213
P N L++ K ++++ + + + VR G
Sbjct: 227 PNY-NADEVRAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGV 285
Query: 214 IFGERPC 220
+FG+ P
Sbjct: 286 LFGDLPT 292
>gi|153827222|ref|ZP_01979889.1| alanine racemase, putative [Vibrio cholerae MZO-2]
gi|149738872|gb|EDM53204.1| alanine racemase, putative [Vibrio cholerae MZO-2]
Length = 428
Score = 36.9 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 13/127 (10%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIP 164
A L+ + + + V+I +N G + M + K + + L+V G+M
Sbjct: 167 ALDLAELAKQSGKTIKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHF 226
Query: 165 PAMGNPKPHFYLLSEIAR---------ECKLTKLSMGMTRDFEL--AIASGATSVRIGSG 213
P N L++ K ++++ + + + VR G
Sbjct: 227 PNY-NADEVRAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGV 285
Query: 214 IFGERPC 220
+FG+ P
Sbjct: 286 LFGDLPT 292
>gi|153873428|ref|ZP_02002015.1| diaminopimelate decarboxylase [Beggiatoa sp. PS]
gi|152070106|gb|EDN67985.1| diaminopimelate decarboxylase [Beggiatoa sp. PS]
Length = 414
Score = 36.9 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V E L+ + PV ++VN + K GI N D
Sbjct: 124 VESEAELLRLNQVAGDMGKMAPVSLRVNPDVDAKTHPYISTGLKENKFGIDINSAIDVYK 183
Query: 148 LCRQKYQLNVEGLMC 162
+ L + G+ C
Sbjct: 184 KAKALPHLQIIGIDC 198
>gi|229529606|ref|ZP_04418996.1| alanine racemase [Vibrio cholerae 12129(1)]
gi|229333380|gb|EEN98866.1| alanine racemase [Vibrio cholerae 12129(1)]
Length = 428
Score = 36.9 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 13/127 (10%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIP 164
A L+ + + + V+I +N G + M + K + + L+V G+M
Sbjct: 167 ALDLAELAKQSGKTIKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHF 226
Query: 165 PAMGNPKPHFYLLSEIAR---------ECKLTKLSMGMTRDFEL--AIASGATSVRIGSG 213
P N L++ K ++++ + + + VR G
Sbjct: 227 PNY-NADEVRAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGV 285
Query: 214 IFGERPC 220
+FG+ P
Sbjct: 286 LFGDLPT 292
>gi|148553730|ref|YP_001261312.1| alanine racemase [Sphingomonas wittichii RW1]
gi|148498920|gb|ABQ67174.1| alanine racemase [Sphingomonas wittichii RW1]
Length = 378
Score = 36.9 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 33/193 (17%), Positives = 62/193 (32%), Gaps = 23/193 (11%)
Query: 39 SKKIRVAL-SCGQVIFAENKLQEAKKKWIPLRKEWD-VQLRFIGSLQSNKVSEIVSL--F 94
+ ++ AL G F + + D V++ + LQ + L
Sbjct: 48 AARVAAALRDAGCRRF---FVAHLVEAARLREAIGDGVEIGVLNGLQPGAETACAELGAV 104
Query: 95 DVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ 154
V+ + + + S LP IQ +TG + G+ P + + + +
Sbjct: 105 PVLNALDQI---ERWAALARASSARLPCMIQFDTGM--SRLGLAPGEVRALIDRPERLDG 159
Query: 155 LNVEGLMCIPPAMGNPK--------PHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT 206
L++ +M P+ F AR + S+ + L A
Sbjct: 160 LDIRLIMSHLACADEPERASNQHQAQAFDAF--CARFPGIP-RSLDNSGGALLPRAHHYD 216
Query: 207 SVRIGSGIFGERP 219
VR G ++G P
Sbjct: 217 VVRAGIALYGGAP 229
>gi|68536824|ref|YP_251529.1| hypothetical protein jk1734 [Corynebacterium jeikeium K411]
gi|260579183|ref|ZP_05847073.1| D-alanine racemase [Corynebacterium jeikeium ATCC 43734]
gi|68264423|emb|CAI37911.1| alr [Corynebacterium jeikeium K411]
gi|258602669|gb|EEW15956.1| D-alanine racemase [Corynebacterium jeikeium ATCC 43734]
Length = 572
Score = 36.9 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 35/197 (17%), Positives = 67/197 (34%), Gaps = 48/197 (24%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIFAEN 56
++ + ++VF++ +A A ++AV K + A L G
Sbjct: 17 AIAHNVRVFRE----AAAPAG-------VLAVVKADAYNHGVDVVAPAMLDAGVEQLG-- 63
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLF-----DVIE--------TVSRE 103
L + ++ G +S + I + D+ E V
Sbjct: 64 --------VATLGEALHLREILAGLGESYASAPITAWMWTPGEDLAEVFAADINVGVPSL 115
Query: 104 KTASLLSLEMIKQSR------FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK-YQLN 156
A L + K R + V + V+TG + +SG+ P + ++ V L K +
Sbjct: 116 AHARSLVDQAEKTQREAQVSAPVRVTLMVDTG--LSRSGVSPAEWRETVELLASKTELVE 173
Query: 157 VEGLMCIPPAMGNPKPH 173
V +M + +PK
Sbjct: 174 VTAVMTHMASADDPKSE 190
>gi|322513198|ref|ZP_08066326.1| diaminopimelate decarboxylase [Actinobacillus ureae ATCC 25976]
gi|322121029|gb|EFX92862.1| diaminopimelate decarboxylase [Actinobacillus ureae ATCC 25976]
Length = 416
Score = 36.9 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 40/114 (35%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
+ ++ + + P+ ++VN + K G+ NQ ++ +
Sbjct: 124 IESIAELHRINEVAGQLGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNQAREVYL 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + + G+ C + P + L+ ++ + +L L +G
Sbjct: 184 LAKSLPNVKITGMDCHIGSQLTELQPFLDATDRLIVLMDQLKEDGIELHHLDLG 237
>gi|193213915|ref|YP_001995114.1| diaminopimelate decarboxylase [Chloroherpeton thalassium ATCC
35110]
gi|193087392|gb|ACF12667.1| diaminopimelate decarboxylase [Chloroherpeton thalassium ATCC
35110]
Length = 417
Score = 36.9 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 19/111 (17%)
Query: 108 LLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVILCRQKYQL 155
L++ K + PV I+VN TG +K GI ++ L ++ L
Sbjct: 135 LINEIAKKNNLVAPVGIRVNPNVLAETHPYITTGDSEEKFGIDETLAEETFSLIKRLENL 194
Query: 156 NVEGL-MCIPPAMGNPKPHFYLL------SEIARECKLTKLSMGMTRDFEL 199
N+ GL M I + + P++ IA + + F +
Sbjct: 195 NLIGLDMHIGSQIFDTLPYYEATLKLLGVKNIAESMGFEIEHIDIGGGFPV 245
>gi|254286591|ref|ZP_04961547.1| alanine racemase, putative [Vibrio cholerae AM-19226]
gi|150423349|gb|EDN15294.1| alanine racemase, putative [Vibrio cholerae AM-19226]
Length = 428
Score = 36.9 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 13/127 (10%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIP 164
A L+ + + + V+I +N G + M + K + + L+V G+M
Sbjct: 167 ALDLAELAKQSGKTIKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHF 226
Query: 165 PAMGNPKPHFYLLSEIAR---------ECKLTKLSMGMTRDFEL--AIASGATSVRIGSG 213
P N L++ K ++++ + + + VR G
Sbjct: 227 PNY-NADEVRAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGV 285
Query: 214 IFGERPC 220
+FG+ P
Sbjct: 286 LFGDLPT 292
>gi|153830040|ref|ZP_01982707.1| putative alanine racemase [Vibrio cholerae 623-39]
gi|148874480|gb|EDL72615.1| putative alanine racemase [Vibrio cholerae 623-39]
Length = 428
Score = 36.9 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 13/127 (10%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIP 164
A L+ + + + V+I +N G + M + K + + L+V G+M
Sbjct: 167 ALDLAELAKQSGKTIKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHF 226
Query: 165 PAMGNPKPHFYLLSEIAR---------ECKLTKLSMGMTRDFEL--AIASGATSVRIGSG 213
P N L++ K ++++ + + + VR G
Sbjct: 227 PNY-NADEVRAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGV 285
Query: 214 IFGERPC 220
+FG+ P
Sbjct: 286 LFGDLPT 292
>gi|153802661|ref|ZP_01957247.1| alanine racemase, putative [Vibrio cholerae MZO-3]
gi|124121789|gb|EAY40532.1| alanine racemase, putative [Vibrio cholerae MZO-3]
Length = 428
Score = 36.9 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 13/127 (10%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIP 164
A L+ + + + V+I +N G + M + K + + L+V G+M
Sbjct: 167 ALDLAELAKQSGKTIKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHF 226
Query: 165 PAMGNPKPHFYLLSEIAR---------ECKLTKLSMGMTRDFEL--AIASGATSVRIGSG 213
P N L++ K ++++ + + + VR G
Sbjct: 227 PNY-NADEVRAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGV 285
Query: 214 IFGERPC 220
+FG+ P
Sbjct: 286 LFGDLPT 292
>gi|153216974|ref|ZP_01950738.1| alanine racemase, putative [Vibrio cholerae 1587]
gi|124114006|gb|EAY32826.1| alanine racemase, putative [Vibrio cholerae 1587]
Length = 428
Score = 36.9 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 13/127 (10%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIP 164
A L+ + + + V+I +N G + M + K + + L+V G+M
Sbjct: 167 ALDLAELAKQSGKTIKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHF 226
Query: 165 PAMGNPKPHFYLLSEIAR---------ECKLTKLSMGMTRDFEL--AIASGATSVRIGSG 213
P N L++ K ++++ + + + VR G
Sbjct: 227 PNY-NADEVRAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGV 285
Query: 214 IFGERPC 220
+FG+ P
Sbjct: 286 LFGDLPT 292
>gi|121704136|ref|XP_001270332.1| tRNA-splicing endonuclease, putative [Aspergillus clavatus NRRL 1]
gi|119398476|gb|EAW08906.1| tRNA-splicing endonuclease, putative [Aspergillus clavatus NRRL 1]
Length = 2137
Score = 36.9 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 55 ENKLQEAKKKWIPLRKEWDVQL---RFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
EN E +K+ + EWD++ ++ + K+ I + + R S+
Sbjct: 111 ENYDDEDIEKFARMLDEWDIKRITKHL--AVATAKLKSIAPQEIGLHVLDRASLLSIFET 168
Query: 112 EMIKQSRFLPVYIQVNTGY 130
+ +Q +
Sbjct: 169 LSCEAMLRNNALLQEHFDE 187
>gi|261322850|ref|ZP_05962047.1| alanine racemase [Brucella neotomae 5K33]
gi|261298830|gb|EEY02327.1| alanine racemase [Brucella neotomae 5K33]
Length = 314
Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 33/240 (13%), Positives = 71/240 (29%), Gaps = 50/240 (20%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + +I + AV K + + ++ A G F
Sbjct: 27 ALRHNYSAIATRIAPTRTA-----------AVVKADAYGLGASRVAPAFYEAGCRDFFVA 75
Query: 54 --AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
E + + D L + LQ + ++ ++ + +
Sbjct: 76 HLGE-------AVALKPFLKPDATLYVLNGLQPGTEAACARE-GILPVLNSLEQVENWAA 127
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI-------- 163
+ + LP +Q +TG + + G+ + + +++++ I
Sbjct: 128 LATRLGKKLPALLQFDTG--MSRLGLSAKEFDRLLENVTLLSRIDIK--FAISHLANGDE 183
Query: 164 PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT----SVRIGSGIFGERP 219
P N + + + +AR KL F G T R G ++G P
Sbjct: 184 PGNAANARQLAKMTALLARLPKLPAALANSGGTFL-----GKTYYFDLARPGIALYGIDP 238
>gi|240112021|ref|ZP_04726511.1| hypothetical protein NgonM_00270 [Neisseria gonorrhoeae MS11]
gi|254492827|ref|ZP_05105998.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae 1291]
gi|268598074|ref|ZP_06132241.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae MS11]
gi|226511867|gb|EEH61212.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae 1291]
gi|268582205|gb|EEZ46881.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae MS11]
Length = 406
Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 12/74 (16%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVIL 148
+ + + PV ++VN + K GI +
Sbjct: 117 ESIPEIDRIQKIAARLGKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRH 176
Query: 149 CRQKYQLNVEGLMC 162
Q+ L + G+ C
Sbjct: 177 AAQQPNLKIIGIDC 190
>gi|213970713|ref|ZP_03398838.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tomato T1]
gi|301382601|ref|ZP_07231019.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tomato
Max13]
gi|302059222|ref|ZP_07250763.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tomato K40]
gi|302133620|ref|ZP_07259610.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213924547|gb|EEB58117.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tomato T1]
Length = 412
Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECK 185
NTG E K GI +D + L R Y+L++ GL M I + + L ++
Sbjct: 150 NTGGENSKHGIWHTHLQDALTLVR-YYRLHLVGLHMHIGSGVD-----YQHLQQVC--ST 201
Query: 186 LTKLSMGMTRDFELAIASG 204
+ +L + M D E AI++G
Sbjct: 202 MAELVVEMDHDIE-AISAG 219
>gi|159474868|ref|XP_001695545.1| hypothetical protein CHLREDRAFT_175110 [Chlamydomonas reinhardtii]
gi|158275556|gb|EDP01332.1| predicted protein [Chlamydomonas reinhardtii]
Length = 390
Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVEG 159
RE L+ + L V +++N G + + G+ ++ + G
Sbjct: 149 EREDNLRQLNAAAAARGTHLDVLVELNVGQD--RCGVNSADEVVQLARAAAGLDNVRFAG 206
Query: 160 L 160
+
Sbjct: 207 I 207
>gi|190150854|ref|YP_001969379.1| diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|307264204|ref|ZP_07545795.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189915985|gb|ACE62237.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|306870450|gb|EFN02203.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 416
Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 14/114 (12%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
+ ++ + + P+ ++VN + K G+ Q ++
Sbjct: 124 IESIAELHRINEVAGQLGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVTQAREVYR 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + + G+ C + P + L+ ++ + +L L +G
Sbjct: 184 LAKSLPNVKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGIELHHLDLG 237
>gi|110597928|ref|ZP_01386210.1| diaminopimelate decarboxylase [Chlorobium ferrooxidans DSM 13031]
gi|110340505|gb|EAT58991.1| diaminopimelate decarboxylase [Chlorobium ferrooxidans DSM 13031]
Length = 409
Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 13/95 (13%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVIL 148
++ + V I++N TG +K GI + L
Sbjct: 120 ESLSELRAINRIAGELELIANVAIRINPNVTAETHPYITTGDSKEKFGIDEAELPAVFAL 179
Query: 149 CRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIAR 182
Q L + GL M I + +P+ + +++
Sbjct: 180 LPQLRNLCLLGLDMHIGSQIFDPEYYVAATTKLLD 214
>gi|110632757|ref|YP_672965.1| alanine racemase [Mesorhizobium sp. BNC1]
gi|110283741|gb|ABG61800.1| alanine racemase [Chelativorans sp. BNC1]
Length = 385
Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 40/123 (32%), Gaps = 13/123 (10%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPP 165
+ +PV +Q++TG + G+ P+ +++E +M
Sbjct: 112 LQAWRKHAATKRGPIPVALQLDTGM--SRLGLSPSDVSGIAADTTLLRGIHIELVMSHLA 169
Query: 166 AMGNP--------KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGE 217
P + F L + + + + + F + +R G+ ++G
Sbjct: 170 CADEPGHSANESQRSRFQRLRRMLPQAPASIANS--SGTFLGKGFHFS-MIRPGAALYGI 226
Query: 218 RPC 220
P
Sbjct: 227 NPT 229
>gi|329928943|ref|ZP_08282753.1| alanine racemase [Paenibacillus sp. HGF5]
gi|328937195|gb|EGG33622.1| alanine racemase [Paenibacillus sp. HGF5]
Length = 395
Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 13/139 (9%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVI 147
EI +DV T+ + + +K + L V+I++++G + G++P F+
Sbjct: 94 EIAYEYDVTITLFSSEVLQAIKALPVKPEKPLKVHIKIDSGM--GRLGLLPGEDAISFIE 151
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKP-----HFYLLSEIARECKLTKLSMGMTRDFELAIA 202
Q+ VEG+ + +A + + + A A
Sbjct: 152 EAFSLPQVVVEGMFTHFARADEENKDYTLGQYRRFQGVADALRDKDYHIPIIHTGNSAAA 211
Query: 203 SGA-----TSVRIGSGIFG 216
VR+G G++G
Sbjct: 212 IDTPELSYNMVRVGIGLYG 230
>gi|282163529|ref|YP_003355914.1| diaminopimelate decarboxylase [Methanocella paludicola SANAE]
gi|282155843|dbj|BAI60931.1| diaminopimelate decarboxylase [Methanocella paludicola SANAE]
Length = 426
Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 61/177 (34%), Gaps = 31/177 (17%)
Query: 39 SKKIRVALSCGQVIF--AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSN-KVSEIVSLFD 95
++I G F E L L ++ F G+ +++ +++ V
Sbjct: 70 VQRILAQEGAGADAFSDGEIYL-------ARLAGIPAQKILFTGNSKTDAELAYAVEAGV 122
Query: 96 VIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTK 143
++ ++ LS + + V +VN TG +I K GI +
Sbjct: 123 MV-SIDSHDELISLSHIAKAHGKTMNVAFRVNPEISGDTHPKLATGLKISKFGIPRQEIV 181
Query: 144 DFVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARECKLTKLSMG 192
D + +N G+ C + P + L+++I++ L + +G
Sbjct: 182 DTYKEASKLPGINPVGIHCHIGSQILEVSPYVETVNRMMDLVAQISKFVDLEFVDIG 238
>gi|297578895|ref|ZP_06940823.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|297536489|gb|EFH75322.1| conserved hypothetical protein [Vibrio cholerae RC385]
Length = 428
Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 13/127 (10%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIP 164
A L+ + + + V+I +N G + M + K + + L+V G+M
Sbjct: 167 ALDLAELAKQSGKTIKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHF 226
Query: 165 PAMGNPKPHFYLLSEIAR---------ECKLTKLSMGMTRDFEL--AIASGATSVRIGSG 213
P N L++ K ++++ + + + VR G
Sbjct: 227 PNY-NADEVRAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGV 285
Query: 214 IFGERPC 220
+FG+ P
Sbjct: 286 LFGDLPT 292
>gi|91224603|ref|ZP_01259864.1| alanine racemase [Vibrio alginolyticus 12G01]
gi|91190491|gb|EAS76759.1| alanine racemase [Vibrio alginolyticus 12G01]
Length = 409
Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 32/160 (20%), Positives = 57/160 (35%), Gaps = 18/160 (11%)
Query: 78 FIGSLQSNKVSEIVSLFDVI-----ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI 132
F G L + ++I + VI E + + A LS K + + V++ +N G
Sbjct: 115 FKGQLMRVRSADIGEIEAVIDLNVEELIGTAEQAKALSKLAEKAGKEIKVHLALNDGGMG 174
Query: 133 QKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSM 191
+ M + K + Q+ +N+ G+M P N L+
Sbjct: 175 RNGVDMTTEAGKKEALEIAQQAGVNIVGIMTHFPNY-NADDVRQKLASFKDSSAWLIKEA 233
Query: 192 GMTRD---FELAIASGA--------TSVRIGSGIFGERPC 220
+ RD +A + A VR G ++G+ P
Sbjct: 234 NLKRDNILLHVANSYTALNVPEAQLDMVRPGGVLYGDLPT 273
>gi|54310576|ref|YP_131596.1| putative diaminopimelate decarboxylase [Photobacterium profundum
SS9]
gi|46915019|emb|CAG21794.1| putative diaminopimelate decarboxylase [Photobacterium profundum
SS9]
Length = 416
Score = 36.5 bits (84), Expect = 2.3, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 20/104 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI + +
Sbjct: 125 VESEPELERLNQVASELGLVAPISLRINPDVDAQTHPYISTGLRDNKFGIFFERAVEVYR 184
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE 183
L LNV G+ C I P + L+ + E
Sbjct: 185 LAHSLPNLNVVGMDCHIGSQLTNIDPFIDATDRLLALIDTLKAE 228
>gi|310815136|ref|YP_003963100.1| alanine racemase domain protein [Ketogulonicigenium vulgare Y25]
gi|308753871|gb|ADO41800.1| alanine racemase domain protein [Ketogulonicigenium vulgare Y25]
Length = 373
Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 20/108 (18%)
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFY 175
L V ++++ G + G+ P Q D + L+ GL + +F
Sbjct: 141 GVTLDVLVEIDCGS--HRCGVQPGQPAVDLALAIDAAPNLHFAGL----------QSYFG 188
Query: 176 LLSEIARECK---LTKLSMGMTRDFELAI-ASGATSVRI---GSGIFG 216
I + ++S+ +T D AI A+G T R+ G+G +G
Sbjct: 189 RAQHIYDAAERRAALEVSLKLTADTRDAIRAAGLTCDRVTGAGTGTYG 236
>gi|239994458|ref|ZP_04714982.1| putative diaminopimelate decarboxylase [Alteromonas macleodii ATCC
27126]
Length = 245
Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V E ++ + P+ +++N + K GI +
Sbjct: 124 VESEPELHRINQVAGEMGTKAPISLRINPDVDAKTHPYISTGLKANKFGIARERALATYE 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIA-RECKLTKLSMG 192
L LNV G+ C I P + + L+ E+A R + L +G
Sbjct: 184 LAASLPHLNVVGMDCHIGSQLTEIGPFVDALERLLLLIDELAERNIIIEHLDVG 237
>gi|146280906|ref|YP_001171059.1| diaminopimelate decarboxylase [Pseudomonas stutzeri A1501]
gi|145569111|gb|ABP78217.1| diaminopimelate decarboxylase [Pseudomonas stutzeri A1501]
gi|327479175|gb|AEA82485.1| diaminopimelate decarboxylase [Pseudomonas stutzeri DSM 4166]
Length = 415
Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + PV ++VN + K GI + +
Sbjct: 124 VESTDELERLQQVAAELGMKAPVSLRVNPDVDAGTHPYISTGLKENKFGIDIDNAEAVYA 183
Query: 148 LCRQKYQLNVEGLMC 162
+ L V G+ C
Sbjct: 184 RAAELPNLEVVGVDC 198
>gi|73542823|ref|YP_297343.1| diaminopimelate decarboxylase [Ralstonia eutropha JMP134]
gi|72120236|gb|AAZ62499.1| diaminopimelate decarboxylase [Ralstonia eutropha JMP134]
Length = 419
Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 13/104 (12%), Positives = 28/104 (26%), Gaps = 13/104 (12%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L+ + + V +++N + K GI
Sbjct: 125 VESIPELDRLNAVAGQIGKRARVSLRINPDVDAKTHPYISTGLKGNKFGIAFEDVLPTYR 184
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIARECKLTKLS 190
+ V G+ C I + P+ L ++ + +
Sbjct: 185 AAAALPNIEVTGIDCHIGSQITEVAPYLEALDKVLDVVEALERE 228
>gi|59802399|ref|YP_209111.1| hypothetical protein NGO2098 [Neisseria gonorrhoeae FA 1090]
gi|239998049|ref|ZP_04717973.1| hypothetical protein Ngon3_00993 [Neisseria gonorrhoeae 35/02]
gi|240079813|ref|ZP_04724356.1| hypothetical protein NgonF_00641 [Neisseria gonorrhoeae FA19]
gi|240114768|ref|ZP_04728830.1| hypothetical protein NgonPID1_00673 [Neisseria gonorrhoeae PID18]
gi|240116968|ref|ZP_04731030.1| hypothetical protein NgonPID_00658 [Neisseria gonorrhoeae PID1]
gi|240122606|ref|ZP_04735562.1| hypothetical protein NgonP_01441 [Neisseria gonorrhoeae PID332]
gi|240124794|ref|ZP_04737680.1| hypothetical protein NgonSK_00970 [Neisseria gonorrhoeae SK-92-679]
gi|240127312|ref|ZP_04739973.1| hypothetical protein NgonS_01425 [Neisseria gonorrhoeae SK-93-1035]
gi|260441419|ref|ZP_05795235.1| hypothetical protein NgonDG_10117 [Neisseria gonorrhoeae DGI2]
gi|268593898|ref|ZP_06128065.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae 35/02]
gi|268595955|ref|ZP_06130122.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae FA19]
gi|268600416|ref|ZP_06134583.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae PID18]
gi|268602648|ref|ZP_06136815.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae PID1]
gi|268681197|ref|ZP_06148059.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae PID332]
gi|268683367|ref|ZP_06150229.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae SK-92-679]
gi|268685676|ref|ZP_06152538.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae SK-93-1035]
gi|291044781|ref|ZP_06570490.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae DGI2]
gi|293397871|ref|ZP_06642077.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae F62]
gi|59719294|gb|AAW90699.1| putative diaminopimelate decarboxylase [Neisseria gonorrhoeae FA
1090]
gi|268547287|gb|EEZ42705.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae 35/02]
gi|268549743|gb|EEZ44762.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae FA19]
gi|268584547|gb|EEZ49223.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae PID18]
gi|268586779|gb|EEZ51455.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae PID1]
gi|268621481|gb|EEZ53881.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae PID332]
gi|268623651|gb|EEZ56051.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae SK-92-679]
gi|268625960|gb|EEZ58360.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae SK-93-1035]
gi|291011675|gb|EFE03671.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae DGI2]
gi|291611817|gb|EFF40886.1| diaminopimelate decarboxylase [Neisseria gonorrhoeae F62]
gi|317165492|gb|ADV09033.1| hypothetical protein NGTW08_2082 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 406
Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 12/74 (16%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVIL 148
+ + + PV ++VN + K GI +
Sbjct: 117 ESIPEIDRIQKIAARLGKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRH 176
Query: 149 CRQKYQLNVEGLMC 162
Q+ L + G+ C
Sbjct: 177 AAQQPNLKIIGIDC 190
>gi|254562604|ref|YP_003069699.1| ornithine/diaminopimelate PLP-dependent decarboxylase
[Methylobacterium extorquens DM4]
gi|254269882|emb|CAX25860.1| putative ornithine/diaminopimelate PLP-dependent decarboxylase
[Methylobacterium extorquens DM4]
Length = 429
Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 12/83 (14%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVN-----------TGYEIQKSGIMPNQTKDF 145
I +RE+ ++ + + V +++N G + G +
Sbjct: 134 IHLENREEIV-RVAAAAERHGVRVRVALRINPGATAQGGAMRMGGKPSPFGFDEEDIEAA 192
Query: 146 VILCRQKYQLNVEGLMCIPPAMG 168
+ + +L + GL G
Sbjct: 193 IDIVEAAPRLRLVGLHLFAGTQG 215
>gi|254226880|ref|ZP_04920449.1| alanine racemase [Vibrio cholerae V51]
gi|125620597|gb|EAZ48962.1| alanine racemase [Vibrio cholerae V51]
Length = 411
Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 13/127 (10%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIP 164
A L+ + + + V+I +N G + M + K + + L+V G+M
Sbjct: 153 ALDLAELAKQSGKTIKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHF 212
Query: 165 PAMGNPKPHFYLLSEIAR---------ECKLTKLSMGMTRDFEL--AIASGATSVRIGSG 213
P N L++ K ++++ + + + VR G
Sbjct: 213 PNY-NADEVRAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGV 271
Query: 214 IFGERPC 220
+FG+ P
Sbjct: 272 LFGDLPT 278
>gi|37523387|ref|NP_926764.1| alanine racemase [Gloeobacter violaceus PCC 7421]
gi|35214391|dbj|BAC91759.1| alanine racemase [Gloeobacter violaceus PCC 7421]
Length = 381
Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 73/234 (31%), Gaps = 33/234 (14%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
+L + +Q +Q++ + ++AV K + R AL G
Sbjct: 18 ALRHNVQQIRQRLRSHC----------RVMAVVKADAYGHGALSAGRAALEAGAACLG-- 65
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
+ ++ + +G + + V + + T+ + + + +
Sbjct: 66 -VATLEEGAQLRESGLGCPIVVLGPIHTGAEVAAVEHWRLEPTLCTPRQVLVCAEHLSA- 123
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK----- 171
PV+++++TG + G +FV L + +L V + P
Sbjct: 124 --PHPVHLKIDTGM--TRLGAPWQDAVEFVRLAYRLPRLQVASVYSHLATADEPDSAALG 179
Query: 172 PHFYLLSEIARECKLTKLSMGMTRDFELAIASGA-----TSVRIGSGIFGERPC 220
+ E + + A A G VR+G ++G P
Sbjct: 180 EQHRRFERVLGELEAAGVRPECVHLANSAAALGDPGLHYDLVRVGVALYGLYPA 233
>gi|268315648|ref|YP_003289367.1| alanine racemase domain-containing protein [Rhodothermus marinus
DSM 4252]
gi|262333182|gb|ACY46979.1| alanine racemase domain protein [Rhodothermus marinus DSM 4252]
Length = 396
Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 20/123 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF---VILCRQKYQLN 156
+ + S + R V ++V+TG+ ++G+ + + L ++ L
Sbjct: 108 LDTPEAIRAASDFFAARGRQAEVLLEVDTGF--GRTGVRWDDARRLVDCARLIQESPGLR 165
Query: 157 VEGLMCI-------PPAMGNPKPHFYLLSE------IARECKLTKLSMGMTRDFELAIAS 203
+ GL+ P +P ++ +A L + + FEL++
Sbjct: 166 LIGLLTHAGQAYHGPGPDESPADALRRVAAEERDRLLAAAVTLQQAGLAHPERFELSV-- 223
Query: 204 GAT 206
G+T
Sbjct: 224 GST 226
>gi|71905849|ref|YP_283436.1| diaminopimelate decarboxylase [Dechloromonas aromatica RCB]
gi|71845470|gb|AAZ44966.1| diaminopimelate decarboxylase [Dechloromonas aromatica RCB]
Length = 420
Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 13/94 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L+ + + P+ ++VN + K G+ + D
Sbjct: 128 VESAAELERLNEVASQCGKKAPISLRVNPNVDPKTHPYISTGLKGAKFGVAYDNALDLYR 187
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEI 180
+ V G+ C I + +P P L I
Sbjct: 188 RAAALPSIEVTGIDCHIGSQLLDPSPFVEALDRI 221
>gi|145225510|ref|YP_001136188.1| alanine racemase [Mycobacterium gilvum PYR-GCK]
gi|145217996|gb|ABP47400.1| alanine racemase [Mycobacterium gilvum PYR-GCK]
Length = 383
Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 27/140 (19%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY---QL 155
+S + L + + R V ++ +TG + ++G+ P V + +
Sbjct: 107 ALSSRRQLDDLLRAVARTGRTATVTVKADTG--LSRNGVSPADHPGLVSALARAQTDGAV 164
Query: 156 NVEGLMCIPPAMGNPKPHF-----YLLSEIARECKLTKLSMGMTRDFELAIASGA----- 205
V GLM P F L+E+A E + S G+ +++ +
Sbjct: 165 TVHGLMSHLAHGDVPDHPFNDEQARRLTEMASEAR----SAGVA--YDVVHLCNSPAALT 218
Query: 206 ------TSVRIGSGIFGERP 219
VR G ++G+ P
Sbjct: 219 RPDLAFDMVRPGIAVYGQTP 238
>gi|315445863|ref|YP_004078742.1| alanine racemase [Mycobacterium sp. Spyr1]
gi|315264166|gb|ADU00908.1| alanine racemase [Mycobacterium sp. Spyr1]
Length = 375
Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 27/140 (19%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY---QL 155
+S + L + + R V ++ +TG + ++G+ P V + +
Sbjct: 99 ALSSRRQLDDLLRAVARTGRTATVTVKADTG--LSRNGVSPADHPGLVSALARAQTDGAV 156
Query: 156 NVEGLMCIPPAMGNPKPHF-----YLLSEIARECKLTKLSMGMTRDFELAIASGA----- 205
V GLM P F L+E+A E + S G+ +++ +
Sbjct: 157 TVHGLMSHLAHGDVPDHPFNDEQARRLTEMASEAR----SAGVA--YDVVHLCNSPAALT 210
Query: 206 ------TSVRIGSGIFGERP 219
VR G ++G+ P
Sbjct: 211 RPDLAFDMVRPGIAVYGQTP 230
>gi|256784121|ref|ZP_05522552.1| oxidoreductase [Streptomyces lividans TK24]
gi|289768001|ref|ZP_06527379.1| oxidoreductase [Streptomyces lividans TK24]
gi|289698200|gb|EFD65629.1| oxidoreductase [Streptomyces lividans TK24]
Length = 340
Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 14 IENSAILAKRPKDSVSL-VAVSKMVDSKKIRVALSCG---QVIFA---ENKLQEAKKKWI 66
+ ++A A R V++ VA V + AL+ F N + + K+
Sbjct: 187 VRDAAEAAGRDPSEVTVCVAAPAYVTADDSPEALAHAREQCRWFGGMVGNHVADLVAKYG 246
Query: 67 P 67
Sbjct: 247 A 247
>gi|194334745|ref|YP_002016605.1| alanine racemase [Prosthecochloris aestuarii DSM 271]
gi|194312563|gb|ACF46958.1| alanine racemase [Prosthecochloris aestuarii DSM 271]
Length = 386
Score = 36.5 bits (84), Expect = 2.4, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 21/120 (17%)
Query: 117 SRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYL 176
+R L V+++V+TG + G+ P + + + + L +EG+
Sbjct: 139 NRLLNVHVKVDTGM--GRLGLPPEKAMELLSSIEENDHLQLEGVYTHFAQSTISDDFTRR 196
Query: 177 LSEIARECKLTKLSMGMTRDF-----ELAIASGA---------TSVRIGSGIFGERPCQT 222
++ R ++ F + A SGA VR G ++G P T
Sbjct: 197 QTDCFRHL-CSEFE----HRFRRSVIKHAAGSGAIICQKNAHLDMVRPGIMLYGYPPDST 251
>gi|194100049|ref|YP_002003189.1| LysA [Neisseria gonorrhoeae NCCP11945]
gi|193935339|gb|ACF31163.1| LysA [Neisseria gonorrhoeae NCCP11945]
Length = 406
Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 12/74 (16%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVIL 148
+ + + PV ++VN + K GI +
Sbjct: 117 ESIPEIDRIQKIAARLGKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRH 176
Query: 149 CRQKYQLNVEGLMC 162
Q+ L + G+ C
Sbjct: 177 AAQQPNLKIIGIDC 190
>gi|218530082|ref|YP_002420898.1| diaminopimelate decarboxylase [Methylobacterium chloromethanicum
CM4]
gi|218522385|gb|ACK82970.1| diaminopimelate decarboxylase [Methylobacterium chloromethanicum
CM4]
Length = 422
Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 16/101 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E + LS + + R PV I+VN TG K GI ++ +
Sbjct: 124 VESEPELAALSEVAVARGRKAPVSIRVNPDVDALTHAKISTGKSDNKFGIPISRARAVYA 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGN---PKPHFYLLSEIAREC 184
+ L + G+ I + + LL E+AR+
Sbjct: 184 GAARLPGLEIVGVDAHIGSQITDLIPFDNAARLLCELARDL 224
>gi|305682083|ref|ZP_07404887.1| diaminopimelate decarboxylase [Corynebacterium matruchotii ATCC
14266]
gi|305658556|gb|EFM48059.1| diaminopimelate decarboxylase [Corynebacterium matruchotii ATCC
14266]
Length = 452
Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 14/77 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDF-- 145
+ + L+ + + V I+V T +E QK G
Sbjct: 142 LDSHQEIEDLNTIAAELGQTQDVLIRVKPGIDAHTHEFISTAHEDQKFGFSLASGSALKA 201
Query: 146 VILCRQKYQLNVEGLMC 162
+ L + GL C
Sbjct: 202 ARRVVELPNLRLIGLHC 218
>gi|218441140|ref|YP_002379469.1| DNA polymerase I [Cyanothece sp. PCC 7424]
gi|218173868|gb|ACK72601.1| DNA polymerase I [Cyanothece sp. PCC 7424]
Length = 966
Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 83 QSN-KVSEIVSLFDVIETVSREKTASLLSLEMIK-QSRFLPVYIQVNTGYEIQKSGIMPN 140
Q+N KV + D+ + V +K S+L LE ++ Y +VN QK G+ PN
Sbjct: 132 QANYKVKIVTGDRDLFQLVDAQKKISVLYLEKNAFKASSPNGYTEVNPAEVEQKLGVKPN 191
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMG 168
Q D+ LC K ++ G++ I
Sbjct: 192 QVVDYKALCGDKSD-SIPGILGIGEKTA 218
>gi|90414245|ref|ZP_01222225.1| putative diaminopimelate decarboxylase [Photobacterium profundum
3TCK]
gi|90324692|gb|EAS41233.1| putative diaminopimelate decarboxylase [Photobacterium profundum
3TCK]
Length = 416
Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 20/104 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI + +
Sbjct: 125 VESEPELERLNQVASELGVIAPISLRINPDVDAQTHPYISTGLRDNKFGIFFERAVEVYR 184
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE 183
L LNV G+ C I P + L+ + E
Sbjct: 185 LAHSLPNLNVVGMDCHIGSQLTNIDPFIDATDRLLALIDTLKAE 228
>gi|27468687|ref|NP_765324.1| hypothetical protein SE1769 [Staphylococcus epidermidis ATCC 12228]
gi|57867700|ref|YP_189342.1| hypothetical protein SERP1778 [Staphylococcus epidermidis RP62A]
gi|251812100|ref|ZP_04826573.1| amino acid racemase [Staphylococcus epidermidis BCM-HMP0060]
gi|282875395|ref|ZP_06284268.1| alanine racemase, N-terminal domain protein [Staphylococcus
epidermidis SK135]
gi|293368486|ref|ZP_06615110.1| amino acid racemase [Staphylococcus epidermidis M23864:W2(grey)]
gi|27316235|gb|AAO05410.1|AE016750_15 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57638358|gb|AAW55146.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A]
gi|251804434|gb|EES57091.1| amino acid racemase [Staphylococcus epidermidis BCM-HMP0060]
gi|281296160|gb|EFA88681.1| alanine racemase, N-terminal domain protein [Staphylococcus
epidermidis SK135]
gi|291317444|gb|EFE57866.1| amino acid racemase [Staphylococcus epidermidis M23864:W2(grey)]
gi|329731271|gb|EGG67641.1| alanine racemase, N-terminal domain protein [Staphylococcus
epidermidis VCU144]
gi|329736454|gb|EGG72722.1| alanine racemase, N-terminal domain protein [Staphylococcus
epidermidis VCU028]
gi|329737053|gb|EGG73308.1| alanine racemase, N-terminal domain protein [Staphylococcus
epidermidis VCU045]
Length = 353
Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 28/180 (15%), Positives = 60/180 (33%), Gaps = 22/180 (12%)
Query: 48 CGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV-IETVSREKTA 106
G FAE++ L K+ D+ + + +++S ++ I+T T
Sbjct: 49 LGITHFAESR----LDNIEQL-KDLDITFTLLRPTVEADLEKMISRVEMSIQT--ELTTI 101
Query: 107 SLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL----MC 162
L+ + + V ++ + G++ +V + + + GL MC
Sbjct: 102 KKLNTLAKSLDIKHQIMLMV--DWKDGREGVLTYDVVRYVQEVLRLSHIQLVGLAFNFMC 159
Query: 163 I---PPAMGNPK--PHFYLLSEIARECKLTKLSMGMTRDFELAIASG---ATSVRIGSGI 214
P + + F E K +S G + + + +RIG +
Sbjct: 160 FKSEAPNEKDVRMINKFIHNVENETHFKFRIISGGNSSMLPQTLYNHLDKINDLRIGEAL 219
>gi|315181783|gb|ADT88696.1| alanine racemase [Vibrio furnissii NCTC 11218]
Length = 409
Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 13/142 (9%)
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILC 149
+V E + + A LS K + V++ +N G + M K +
Sbjct: 133 AMHLNVEELIGSAEQAKALSALAKKAGHDIKVHLALNDGGMGRNGIDMTTDAGKKESLQI 192
Query: 150 RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMT-RDFELAIASGAT-- 206
+ + G+M P+ + L+ + D L +A+ T
Sbjct: 193 AAAKGVRIVGIMTHFPSY-DADEVRQKLASFNTHSAWLIKEAKLNREDILLHVANSFTAL 251
Query: 207 --------SVRIGSGIFGERPC 220
VR G ++G++P
Sbjct: 252 NVPEAQLDMVRPGGVLYGDQPT 273
>gi|240013231|ref|ZP_04720144.1| hypothetical protein NgonD_01030 [Neisseria gonorrhoeae DGI18]
gi|240015677|ref|ZP_04722217.1| hypothetical protein NgonFA_00668 [Neisseria gonorrhoeae FA6140]
gi|240120302|ref|ZP_04733264.1| hypothetical protein NgonPI_00705 [Neisseria gonorrhoeae PID24-1]
Length = 406
Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 12/74 (16%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVIL 148
+ + + PV ++VN + K GI +
Sbjct: 117 ESIPEIDRIQKIAARLGKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRH 176
Query: 149 CRQKYQLNVEGLMC 162
Q+ L + G+ C
Sbjct: 177 AAQQPNLKIIGIDC 190
>gi|209522716|ref|ZP_03271274.1| alanine racemase [Arthrospira maxima CS-328]
gi|209496765|gb|EDZ97062.1| alanine racemase [Arthrospira maxima CS-328]
Length = 399
Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
+G++ ++ + ++ + + T+ A L S + R LPV Q+N + + G
Sbjct: 103 LGAVHTSDEIKAIAHWGLQPTLCTPTQALLFSETLQSIKRSLPV--QLNIDTGMSRLGTW 160
Query: 139 PNQTKDFVILCRQKYQLNVEGL 160
Q +FV L R L + G+
Sbjct: 161 WEQALEFVQLVRGLPNLEISGI 182
>gi|261409040|ref|YP_003245281.1| alanine racemase [Paenibacillus sp. Y412MC10]
gi|261285503|gb|ACX67474.1| alanine racemase [Paenibacillus sp. Y412MC10]
Length = 395
Score = 36.5 bits (84), Expect = 2.5, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 13/129 (10%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKYQLNV 157
T+ + + +K + L V+I++++G + G++P F+ Q+ V
Sbjct: 104 TLFSSEVLQAIKALPVKPEKPLKVHIKIDSGM--GRLGLLPGEDAISFIEEAFSLPQVVV 161
Query: 158 EGLMCIPPAMGNPKP-----HFYLLSEIARECKLTKLSMGMTRDFELAIASGA-----TS 207
EG+ + +A + + + A A
Sbjct: 162 EGMFTHFARADEENKDYTLGQYRRFQGVADALRDKDYHIPIIHTGNSAAAIDTPELSYNM 221
Query: 208 VRIGSGIFG 216
VR+G G++G
Sbjct: 222 VRVGIGLYG 230
>gi|260769245|ref|ZP_05878178.1| alanine racemase [Vibrio furnissii CIP 102972]
gi|260614583|gb|EEX39769.1| alanine racemase [Vibrio furnissii CIP 102972]
Length = 409
Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 13/142 (9%)
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILC 149
+V E + + A LS K + V++ +N G + M K +
Sbjct: 133 AMHLNVEELIGSAEQAKALSALAKKAGHDIKVHLALNDGGMGRNGIDMTTDAGKKESLQI 192
Query: 150 RQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMT-RDFELAIASGAT-- 206
+ + G+M P+ + L+ + D L +A+ T
Sbjct: 193 AAAKGVRIVGIMTHFPSY-DADEVRQKLASFNTHSAWLIKEAKLNREDILLHVANSFTAL 251
Query: 207 --------SVRIGSGIFGERPC 220
VR G ++G++P
Sbjct: 252 NVPEAQLDMVRPGGVLYGDQPT 273
>gi|197124574|ref|YP_002136525.1| diaminopimelate decarboxylase [Anaeromyxobacter sp. K]
gi|196174423|gb|ACG75396.1| diaminopimelate decarboxylase [Anaeromyxobacter sp. K]
Length = 427
Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 16/100 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V + +S+ + PV ++VN + K G+ ++ +
Sbjct: 124 VESAPELARVSIVARRMGLRAPVALRVNPDVDPKTHPYISTGLSENKFGVSVDEARRLYA 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIARECKL 186
L Q L V G+ C I + +P L IAR L
Sbjct: 184 LAAQDPALEVRGVACHIGSQITTVRPF---LDAIARVLSL 220
>gi|229002622|ref|ZP_04160659.1| Alanine racemase domain protein [Bacillus mycoides Rock3-17]
gi|229008034|ref|ZP_04165588.1| Alanine racemase domain protein [Bacillus mycoides Rock1-4]
gi|228753216|gb|EEM02700.1| Alanine racemase domain protein [Bacillus mycoides Rock1-4]
gi|228758502|gb|EEM07643.1| Alanine racemase domain protein [Bacillus mycoides Rock3-17]
Length = 361
Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 41/177 (23%)
Query: 1 MSLGNKLQVFKQK---IENSAILAKRPKDSVSLVAVSKMVDS--KKIRVALSCGQVIFAE 55
M + L K I+ A +VS V+K V + + I + G FA+
Sbjct: 1 MKI--NLSKLKHNAIMIKRLCEHA-----NVSCFPVTKGVSAATEVIEILKEAGFTKFAD 53
Query: 56 NKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIV----SLFDVIETVSREKTA----- 106
++LQ L I + N V ++ +L +V ETV +
Sbjct: 54 SRLQ---------------HLHKIRKMMGNSVELLLIRTPALSEVEETVLTADISLNSEL 98
Query: 107 ---SLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
L K + V + ++ G + G++P Q + + + G+
Sbjct: 99 CVIEALGRAATKYGKIHRVILMIDLG--DLREGMLPQQMVEVSQRVVGIQGIELVGI 153
>gi|329890871|ref|ZP_08269214.1| diaminopimelate decarboxylase [Brevundimonas diminuta ATCC 11568]
gi|328846172|gb|EGF95736.1| diaminopimelate decarboxylase [Brevundimonas diminuta ATCC 11568]
Length = 424
Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 126 VNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKP---HFYLLSEIA 181
+ TG K G+ + + GL C I + + P F +L ++
Sbjct: 167 ITTGGAGDKFGVPVEEAMALYARASASPHVTPVGLACHIGSQITDLAPLEAAFRVLRQMT 226
Query: 182 RECKLTKLSM 191
+ + S+
Sbjct: 227 EDLRAQGHSI 236
>gi|226360613|ref|YP_002778391.1| diaminopimelate decarboxylase [Rhodococcus opacus B4]
gi|226239098|dbj|BAH49446.1| diaminopimelate decarboxylase [Rhodococcus opacus B4]
Length = 473
Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 24/93 (25%), Gaps = 20/93 (21%)
Query: 88 SEIVSLFDVIET------VSREKTASLLSLEMIKQSRFLPVYIQV------------NTG 129
+ L + + L + V I+V +T
Sbjct: 143 KSVAELNAAVSAGVGHIVLDSATEIDRLDKVAAEAGVVQDVLIRVTVGVEAHTHEFISTA 202
Query: 130 YEIQKSGIMPN--QTKDFVILCRQKYQLNVEGL 160
+E QK G + D V L + GL
Sbjct: 203 HEDQKFGFSLAGGKAIDAVRRVFAADNLRLVGL 235
>gi|126733774|ref|ZP_01749521.1| threonine aldolase [Roseobacter sp. CCS2]
gi|126716640|gb|EBA13504.1| threonine aldolase [Roseobacter sp. CCS2]
Length = 387
Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 36/116 (31%), Gaps = 9/116 (7%)
Query: 83 QSNKVSEIVSL----FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
Q K+ + L I V + LS +K + ++++ G + G+
Sbjct: 109 QPEKIDRLARLPKLGARAICCVDDIDNVADLSAAAMKHGTQIECLVEIDVG--AGRCGVQ 166
Query: 139 PNQ-TKDFVILCRQKYQLNVEGLMCIPPAMG--NPKPHFYLLSEIARECKLTKLSM 191
Q D L G+ AM + ++IA + L M
Sbjct: 167 YGQPVVDLAKAIDAADGLKYAGIQAYQGAMQHLDSYEERQSKTQIAIDQVAETLEM 222
>gi|32265965|ref|NP_859997.1| alanine racemase [Helicobacter hepaticus ATCC 51449]
gi|32262014|gb|AAP77063.1| alanine racemase [Helicobacter hepaticus ATCC 51449]
Length = 413
Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 98 ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP--NQTKDFVILCRQKYQL 155
E + A + + LP++I++N+G + ++GI ++ K+ + L
Sbjct: 134 EVLGNLDQAKKVDSLAKTIGKKLPIHIKLNSGG-MDRNGIDLSTDKGKESAVKLATLPHL 192
Query: 156 NVEGLMCIPPAMGNPK 171
++GLM P K
Sbjct: 193 KIKGLMTHFPYDDTSK 208
>gi|323465202|gb|ADX77355.1| pyridoxal-dependent decarboxylase [Staphylococcus pseudintermedius
ED99]
Length = 400
Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 9/75 (12%), Positives = 26/75 (34%), Gaps = 12/75 (16%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY-----------EIQKSGIMPNQTKDF 145
I V L+ + +++ + + ++VN + + GI +
Sbjct: 110 IH-VESLYELERLNALLKQENATMSILLRVNLAGPFPAATLHMAGQPTQFGIDETEVDTV 168
Query: 146 VILCRQKYQLNVEGL 160
+ + ++ +EG
Sbjct: 169 IATAQNMPRIQLEGF 183
>gi|319891631|ref|YP_004148506.1| Siderophore staphylobactin biosynthesis protein SbnH
[Staphylococcus pseudintermedius HKU10-03]
gi|317161327|gb|ADV04870.1| Siderophore staphylobactin biosynthesis protein SbnH
[Staphylococcus pseudintermedius HKU10-03]
Length = 400
Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 9/75 (12%), Positives = 26/75 (34%), Gaps = 12/75 (16%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGY-----------EIQKSGIMPNQTKDF 145
I V L+ + +++ + + ++VN + + GI +
Sbjct: 110 IH-VESLYELERLNALLKQENATMSILLRVNLAGPFPAATLHMAGQPTQFGIDETEVDTV 168
Query: 146 VILCRQKYQLNVEGL 160
+ + ++ +EG
Sbjct: 169 IATAQNMPRIQLEGF 183
>gi|260771626|ref|ZP_05880546.1| diaminopimelate decarboxylase [Vibrio metschnikovii CIP 69.14]
gi|260613403|gb|EEX38602.1| diaminopimelate decarboxylase [Vibrio metschnikovii CIP 69.14]
Length = 358
Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E LL+ + PV +++N TG K GI + +
Sbjct: 66 VESEPELLLLNQVAGELGVTAPVSLRINPDVDAHTHPYISTGLRDNKFGIAFERAPEVYR 125
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
L +NV G L + P + L+ ++ A + L +G
Sbjct: 126 LANSLEHINVRGIDCHIGSQLTALEPFIDATDRLLALIDQLHAEGIAIAHLDVG 179
>gi|21224723|ref|NP_630502.1| oxidoreductase [Streptomyces coelicolor A3(2)]
gi|3127837|emb|CAA18903.1| putative oxidoreductase [Streptomyces coelicolor A3(2)]
Length = 340
Score = 36.5 bits (84), Expect = 2.6, Method: Composition-based stats.
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 14 IENSAILAKRPKDSVSL-VAVSKMVDSKKIRVALSCG---QVIFA---ENKLQEAKKKWI 66
+ ++A A R V++ VA V + AL+ F N + + K+
Sbjct: 187 VRDAAEAAGRDPSEVTVCVAAPAYVTADDSPEALAHAREQCRWFGGMVGNHVADLVAKYG 246
Query: 67 P 67
Sbjct: 247 A 247
>gi|302344277|ref|YP_003808806.1| alanine racemase [Desulfarculus baarsii DSM 2075]
gi|301640890|gb|ADK86212.1| alanine racemase [Desulfarculus baarsii DSM 2075]
Length = 381
Score = 36.5 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 42/130 (32%), Gaps = 15/130 (11%)
Query: 103 EKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC 162
+T + LS +++V+TG + G+ P + + R L V GL
Sbjct: 110 LETMAALSDVATGLGLRAQCHLKVDTGM--GRLGVRPEDALELLRAARALRGLEVRGLTS 167
Query: 163 IPPAMGNPKPHFY----------LLSEIARECKLTKLSMGMTR---DFELAIASGATSVR 209
G+ L + A L S+ + D A VR
Sbjct: 168 HLATGGSADRAMADEQAAVFGQLLAAARAEGFDLPDSSLCNSGGAMDPPAAAPGPPHVVR 227
Query: 210 IGSGIFGERP 219
+G ++G P
Sbjct: 228 LGIALYGGLP 237
>gi|156317064|ref|XP_001618032.1| hypothetical protein NEMVEDRAFT_v1g8610 [Nematostella vectensis]
gi|156197064|gb|EDO25932.1| predicted protein [Nematostella vectensis]
Length = 184
Score = 36.5 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 20/103 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V E ++ + + + +VN + K GI + K
Sbjct: 68 VESEAELERVNQVAGECGKTAEISFRVNPDVDAGTHPYISTGLKENKFGIAIAEAKRIYQ 127
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIAR 182
++V G+ C + P M + L+ E+A
Sbjct: 128 HAASLPHIHVVGMDCHIGSQLTELAPFMDALERLLGLIDELAE 170
>gi|159043441|ref|YP_001532235.1| alanine racemase domain-containing protein [Dinoroseobacter shibae
DFL 12]
gi|157911201|gb|ABV92634.1| alanine racemase domain protein [Dinoroseobacter shibae DFL 12]
Length = 387
Score = 36.5 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 3/66 (4%)
Query: 96 VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQ 154
I V + + LS K + ++++ G + G+ +
Sbjct: 126 AICCVDDIENVADLSAAATKHGTQIECLVEIDCG--AGRCGVTTTPAVVEIAKAIDAAPG 183
Query: 155 LNVEGL 160
L GL
Sbjct: 184 LKFSGL 189
>gi|164688224|ref|ZP_02212252.1| hypothetical protein CLOBAR_01869 [Clostridium bartlettii DSM
16795]
gi|164602637|gb|EDQ96102.1| hypothetical protein CLOBAR_01869 [Clostridium bartlettii DSM
16795]
Length = 387
Score = 36.5 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 19/135 (14%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ--TKDFVILCRQKYQLN 156
TV + A +++ + K + ++I+++TG + G + + D + L ++ LN
Sbjct: 108 TVYSYEMAKIINQKAGKLGKKASIHIKIDTGM--SRLGFLTDDNSINDILKL-KELINLN 164
Query: 157 VEGLMC-IPPAMGNPKPHFYLLSEIAREC--KLTKLSMGMTRDFEL-----AI----ASG 204
++G+ A K YL E ++ L K ++ + F+ AI G
Sbjct: 165 IDGIYTHFATADETDKKETYLQLERYKKVIDVLEKANIDIQ--FKHVSNTAAIIDLKELG 222
Query: 205 ATSVRIGSGIFGERP 219
VR+G G++G P
Sbjct: 223 FNMVRLGIGLYGHYP 237
>gi|269925950|ref|YP_003322573.1| diaminopimelate decarboxylase [Thermobaculum terrenum ATCC BAA-798]
gi|269789610|gb|ACZ41751.1| diaminopimelate decarboxylase [Thermobaculum terrenum ATCC BAA-798]
Length = 418
Score = 36.5 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 13/97 (13%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFV 146
++ E+ +S +R + I+VN TG K G+ +
Sbjct: 125 SIESEQELRKISELAQSLNRVANISIRVNPNIDPHTHEKITTGLRSNKFGVPIEEALRVY 184
Query: 147 ILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIAR 182
L + + G+ M I + N P + I
Sbjct: 185 QLACTLPAIRIVGIGMHIGSQLVNLDPVIQAANTILD 221
>gi|195381439|ref|XP_002049456.1| GJ20738 [Drosophila virilis]
gi|194144253|gb|EDW60649.1| GJ20738 [Drosophila virilis]
Length = 1695
Score = 36.5 bits (84), Expect = 2.7, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 12/136 (8%)
Query: 57 KLQEAK------KKW-IPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIET-VSREKTASL 108
+QE + +K LR + +R + LQ+ K +V + + A L
Sbjct: 1246 YMQEERRFEVKHQKQLEELRATRESAIRELEQLQNEKRKALVEHEHAKLSEIDERLKAEL 1305
Query: 109 LS--LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPA 166
+++ + + L V I ++ G++ N+ +F L + L + G+ A
Sbjct: 1306 RDWREQLVPRKQRLNVLISAAIDEHERRHGLVANR-GEFENLEVELP-LRLRGIFNERSA 1363
Query: 167 MGNPKPHFYLLSEIAR 182
P+ F + ++ R
Sbjct: 1364 RLLPRNTFIDVQQLPR 1379
>gi|183221706|ref|YP_001839702.1| fused transcript cleavage factor/unknown domain fusion protein
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
gi|189911782|ref|YP_001963337.1| transcript cleavage factor/unknown domain fusion protein
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167776458|gb|ABZ94759.1| greA transcription elongation factor-related protein [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Ames)']
gi|167780128|gb|ABZ98426.1| Transcriptional elongation factor, GreA/GreB family [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 921
Score = 36.5 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 17/79 (21%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
V VSK + A EN+L EAK+K F +S +
Sbjct: 36 VPVSKFKIFDDVIDAYKA------ENRLAEAKQKIED---------HFKEHPESISAKYM 80
Query: 91 VSLFDVIETVSREKTASLL 109
+ + +E A+L+
Sbjct: 81 LMIISFME--DSMGDANLV 97
>gi|194336708|ref|YP_002018502.1| diaminopimelate decarboxylase [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309185|gb|ACF43885.1| diaminopimelate decarboxylase [Pelodictyon phaeoclathratiforme
BU-1]
Length = 417
Score = 36.5 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 19/118 (16%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVIL 148
+ + V I++N TG +K GI + L
Sbjct: 128 ESLSELRAIDRIAGELGLTASVAIRINPNVTAETHPYITTGDSKEKFGIDEAELSTVFSL 187
Query: 149 CRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEI------ARECKLTKLSMGMTRDFEL 199
+ + + GL M I + +P+ + ++ +RE + + F +
Sbjct: 188 LSRLPNIKLVGLDMHIGSQIFDPEYYVAATVKLLAIFKASRELGFAIEFLDIGGGFPV 245
>gi|319779475|ref|YP_004130388.1| Alanine racemase, catabolic [Taylorella equigenitalis MCE9]
gi|317109499|gb|ADU92245.1| Alanine racemase, catabolic [Taylorella equigenitalis MCE9]
Length = 393
Score = 36.5 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 17/131 (12%)
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG-- 159
+E+ + + + K + + ++I+ NTG + G P++ + + + G
Sbjct: 118 KERLSEMAKESIAKDLKKINLFIKFNTGM--NRLGFKPSEAHEIYDQIKTLKSTGLIGTV 175
Query: 160 --LMCIPPAMGNPKP--------HFY--LLSEIARECKLTKLSMGMTRDF-ELAIASGAT 206
+M A + F L R+ ++ + F ELA SG
Sbjct: 176 GTMMHFANADSDDHEVQVHTIVDDFKKNCLEFEGRKVPVSICNSAACMRFPELASISGTN 235
Query: 207 SVRIGSGIFGE 217
+R G ++G
Sbjct: 236 WIRPGCVLYGS 246
>gi|15893897|ref|NP_347246.1| diaminopimelate decarboxilase, lisA [Clostridium acetobutylicum
ATCC 824]
gi|15023479|gb|AAK78586.1|AE007576_2 Diaminopimelate decarboxilase, lisA [Clostridium acetobutylicum
ATCC 824]
gi|325508024|gb|ADZ19660.1| Diaminopimelate decarboxilase, lisA [Clostridium acetobutylicum EA
2018]
Length = 431
Score = 36.5 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 37/135 (27%), Gaps = 31/135 (22%)
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV------------NTGYEI 132
N + F IE V + K + V++++ TG
Sbjct: 123 NVGRFVADNFYEIEKV---------NEIAKKMGKVQKVFLRITPGIEAHTHEYIKTGQID 173
Query: 133 QKSGIMPN--QTKDFVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIAR 182
K G + V + + GL C I P + + + EI +
Sbjct: 174 SKFGFTLSNGDALKAVKEVLNFQNVELSGLHCHIGSQIFDIAPYLEETRVMLAFIKEIQK 233
Query: 183 ECKLTKLSMGMTRDF 197
E + + F
Sbjct: 234 ETNYEIKELDLGGGF 248
>gi|300087798|ref|YP_003758320.1| diaminopimelate decarboxylase [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527531|gb|ADJ25999.1| diaminopimelate decarboxylase [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 437
Score = 36.5 bits (84), Expect = 2.8, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 39/120 (32%), Gaps = 20/120 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V + S L ++ + +++N G + K G+ + +D +
Sbjct: 136 VDNQSDISRLEAIASEKKDRPAILVRINPGIDPHTHAKISTGNIDSKFGMGLEEARDVID 195
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFEL 199
+ L+++G + I P + +S++ + + + + +
Sbjct: 196 HIIKSDVLDLKGFHYHIGSQIFEIQPFLDALTTALAFISDLMTDLDYATRELDIGGGYAI 255
>gi|192360177|ref|YP_001981190.1| alanine racemase [Cellvibrio japonicus Ueda107]
gi|190686342|gb|ACE84020.1| alanine racemase [Cellvibrio japonicus Ueda107]
Length = 379
Score = 36.5 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 22/134 (16%)
Query: 102 REKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLM 161
+ + LP ++V+TG + G+ + + F C +++ L
Sbjct: 117 SLADVQRWNAYAKNCCKRLPCILKVDTGM--TRMGMSIEELEAF---CEAHASIHIAPLF 171
Query: 162 CI--------PPAMGNPKPH--FYLLSEIARECKLTKLSMGMTRDFELAIASGATS---- 207
+ P N + F +IA + + ++ + I GA
Sbjct: 172 LMSHLACADTPSHPANQRQLQLFKQALDIA-QVRFPEIKASLAN--SAGILLGADWHFDL 228
Query: 208 VRIGSGIFGERPCQ 221
VR G+ ++G P
Sbjct: 229 VRPGAALYGINPVS 242
>gi|329296350|ref|ZP_08253686.1| alanine racemase [Plautia stali symbiont]
Length = 356
Score = 36.5 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 8/133 (6%)
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
++ + + +V L+ + S + VY+++N+G + G P Q +
Sbjct: 90 LIDRYRLTTSVHSNWQIQALAK--AQLSAPVDVYLKINSGM--NRLGFRPEQAQAAWHKL 145
Query: 150 RQKYQLNVEGLMCIPPAMGNPK---PHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT 206
R + LM NP+ + + A S+ + +
Sbjct: 146 RALPSVGEMTLMAHFADAENPQGLVEPMQRVEQAAEGLNCP-RSLANSATTLWHPQAHFD 204
Query: 207 SVRIGSGIFGERP 219
VR G ++G P
Sbjct: 205 WVRPGIILYGASP 217
>gi|303250943|ref|ZP_07337133.1| diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302650215|gb|EFL80381.1| diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 416
Score = 36.5 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 14/114 (12%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
+ ++ + + P+ ++VN + K G+ Q ++
Sbjct: 124 IESIAELHRINEVAGQLGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVTQAREVYR 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + + G+ C + P + L+ ++ + +L L +G
Sbjct: 184 LAKTLPNVKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGIELHHLDLG 237
>gi|71065945|ref|YP_264672.1| D-3-hydroxyaspartate aldolase [Psychrobacter arcticus 273-4]
gi|71038930|gb|AAZ19238.1| D-3-hydroxyaspartate aldolase [Psychrobacter arcticus 273-4]
Length = 383
Score = 36.5 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVE 158
V + LS K L YI+++ G + G+ + + L
Sbjct: 126 VDDIDNVAELSAAATKAGTELNCYIEIDCG--AGRCGVTTTEAVVEIAKAIDAAENLKFT 183
Query: 159 GL 160
G+
Sbjct: 184 GI 185
>gi|77361749|ref|YP_341324.1| arginine decarboxylase [Pseudoalteromonas haloplanktis TAC125]
gi|76876660|emb|CAI87882.1| arginine decarboxylase, PLP-binding, biosynthetic
[Pseudoalteromonas haloplanktis TAC125]
Length = 626
Score = 36.5 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 8/116 (6%)
Query: 74 VQLRFIGSLQSNKVSEIVSLFD----VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
++L IG +KV +V ++E + + + + + + Q NTG
Sbjct: 153 LRLACIGQAMGHKVKIVVEKLSELTTLLEEIDNLGIEPAIGIRI-RLNSVGKGKWQ-NTG 210
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGL--MCIPPAMGNPKPHFYLLSEIARE 183
E K G+ Q V + ++ +L++ + I + N + L E AR
Sbjct: 211 GEKGKFGLTAGQVLSAVEVLKKHNKLHLMQMVHFHIGSQIANIRDIHRALRECARH 266
>gi|148261853|ref|YP_001235980.1| alanine racemase [Acidiphilium cryptum JF-5]
gi|226711024|sp|A5G2H9|ALR_ACICJ RecName: Full=Alanine racemase
gi|146403534|gb|ABQ32061.1| alanine racemase [Acidiphilium cryptum JF-5]
Length = 357
Score = 36.5 bits (84), Expect = 2.9, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 34/117 (29%), Gaps = 7/117 (5%)
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
+ P ++ + + + G+ ++ + L + +M A P
Sbjct: 109 RGAAGDDKAPPSFL--HLDTGMNRLGLDRDEAAHLIAHPTLLDGLGLTHVMTHLVAAEEP 166
Query: 171 KP-----HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ A + S+ + L G+ R G ++G P T
Sbjct: 167 DASANAAQRERFAAFAARFPWLRTSLANSSGLFLGPGFGSDLARPGYALYGGNPTPT 223
>gi|328954155|ref|YP_004371489.1| diaminopimelate decarboxylase [Desulfobacca acetoxidans DSM 11109]
gi|328454479|gb|AEB10308.1| diaminopimelate decarboxylase [Desulfobacca acetoxidans DSM 11109]
Length = 420
Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 12/88 (13%), Positives = 33/88 (37%), Gaps = 12/88 (13%)
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ------------K 134
+ + ++ + + +L+ + R + ++VN + Q K
Sbjct: 111 IRYALEQGILMFNIESPQELQVLNQAAGQMGRRARIALRVNPDVDPQTHPYISTGLKQNK 170
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMC 162
GI +++ ++ +Q L + G+ C
Sbjct: 171 FGIDIDRSVAEYLIAKQLPHLEIVGVAC 198
>gi|307250800|ref|ZP_07532729.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306857159|gb|EFM89286.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 416
Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 14/114 (12%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
+ ++ + + P+ ++VN + K G+ Q ++
Sbjct: 124 IESIAELHRINEVAGQLGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVTQAREVYR 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + + G+ C + P + L+ ++ + +L L +G
Sbjct: 184 LAKTLPNVKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGIELHHLDLG 237
>gi|219850725|ref|YP_002465157.1| diaminopimelate decarboxylase [Methanosphaerula palustris E1-9c]
gi|219544984|gb|ACL15434.1| diaminopimelate decarboxylase [Methanosphaerula palustris E1-9c]
Length = 429
Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 23/119 (19%)
Query: 88 SEIVSLFDVIE-----TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI---------- 132
++ L +E +V L + + + +VN E+
Sbjct: 111 KTLMDLALAVELGIRVSVDSLDELHQLDAVAAEAGKVAEIAFRVNPALEVPTHPKIATGL 170
Query: 133 --QKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSE----IAREC 184
K GI Q + G+ C I + + P F +E IARE
Sbjct: 171 ASSKFGIPHQQIPAAYAEALACSNIKPVGIHCHIGSQILDVTP-FAKAAEVMVRIAREI 228
>gi|206561434|ref|YP_002232199.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
gi|198037476|emb|CAR53412.1| LysR family regulatory protein [Burkholderia cenocepacia J2315]
Length = 312
Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 161 MCIPPAMGNPKPHFYLLSEIAREC----KLTKLSMGMTRDFELAIASGATSVRIG 211
I P F L+ R+ KL L MG D+E A+A G V IG
Sbjct: 100 FTIAMPDYLAPPFFADLARRFRQHAPNAKLVTLPMGTDYDYEKALAEGQVDVVIG 154
>gi|46143532|ref|ZP_00204500.1| COG0019: Diaminopimelate decarboxylase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208989|ref|YP_001054214.1| diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae L20]
gi|126097781|gb|ABN74609.1| diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
Length = 416
Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 14/114 (12%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
+ ++ + + P+ ++VN + K G+ Q ++
Sbjct: 124 IESIAELHRINEVAGQLGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVTQAREVYR 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + + G+ C + P + L+ ++ + +L L +G
Sbjct: 184 LAKTLPNVKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGIELHHLDLG 237
>gi|307262007|ref|ZP_07543662.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306868290|gb|EFN00112.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 416
Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 14/114 (12%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
+ ++ + + P+ ++VN + K G+ Q ++
Sbjct: 124 IESIAELHRINEVAGQSGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVTQAREVYR 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + + G+ C + P + L+ ++ + +L L +G
Sbjct: 184 LAKTLPNVKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGIELHHLDLG 237
>gi|229489294|ref|ZP_04383158.1| arginase family protein [Rhodococcus erythropolis SK121]
gi|229323787|gb|EEN89544.1| arginase family protein [Rhodococcus erythropolis SK121]
Length = 597
Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 31/145 (21%), Positives = 54/145 (37%), Gaps = 20/145 (13%)
Query: 85 NKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKD 144
N++ + + D I S T + L + + + ++ G + GI+P + D
Sbjct: 85 NEIDDTIRYAD-ISLNSELTTIAALGRAARTRGVVHDIVLMIDLG--DLREGILPAEALD 141
Query: 145 FVILCRQKYQLNVEG----LMC---IPPAMGNPKPHFYLLSEIARE--CKLTKLSMGMTR 195
V + + G L C I P + N YL EI + +L +S G
Sbjct: 142 VVAEILPIEGIRLIGIGANLACVGGIQPTVDNLSNLVYLADEITKRFSIELPIVSGG--N 199
Query: 196 DFELAIA------SGATSVRIGSGI 214
F L + G +R+G+ I
Sbjct: 200 TFSLPLLETGTMPEGINHLRLGASI 224
>gi|227505268|ref|ZP_03935317.1| alanine racemase [Corynebacterium striatum ATCC 6940]
gi|227198167|gb|EEI78215.1| alanine racemase [Corynebacterium striatum ATCC 6940]
Length = 363
Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 30/180 (16%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIFAEN 56
++ + + + K+K+ + L+ V K K++ + G F
Sbjct: 10 AIAHNVSLLKEKVAPA-----------QLMCVVKADAYGHGVKEVAPVMAAAGADAFGVA 58
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV-IE-TVSREKTASLLSLEMI 114
L EA + + + + E+ I V A L +
Sbjct: 59 TLDEAVELRRSGIDQPIAAWIW------DSTDEVAEALACRIHIGVPSLTHARCL----V 108
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
+ VYI+V TG + +SG+ + + L R Q+ V GLM P F
Sbjct: 109 ETEVAAKVYIKVETG--LHRSGVDESDWDEVFALFRDAPQIEVLGLMSHFACADEPDNPF 166
>gi|126653403|ref|ZP_01725504.1| hypothetical protein BB14905_11025 [Bacillus sp. B14905]
gi|126589840|gb|EAZ83972.1| hypothetical protein BB14905_11025 [Bacillus sp. B14905]
Length = 391
Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 8/72 (11%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------IQK--SGIMPNQTKDFVILCRQ 151
V R++ LL+ + +P+ I +N + K S F+ +
Sbjct: 114 VDRQEHIQLLAKLGNEMGVRVPICIDINVSNDFKLLYFGTKRSSLYSLEMLTPFLQAIKN 173
Query: 152 KYQLNVEGLMCI 163
+ V G M
Sbjct: 174 NPSIEVVGAMGY 185
>gi|93005807|ref|YP_580244.1| alanine racemase-like [Psychrobacter cryohalolentis K5]
gi|92393485|gb|ABE74760.1| D-3-hydroxyaspartate aldolase [Psychrobacter cryohalolentis K5]
Length = 384
Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVE 158
V + LS K L YI+++ G + G+ + + L
Sbjct: 127 VDDVDNVAELSAAATKAGTELNCYIEIDCG--AGRCGVTTTEAVVEIAKAIDAAENLKFT 184
Query: 159 GL 160
G+
Sbjct: 185 GI 186
>gi|254472266|ref|ZP_05085666.1| diaminopimelate decarboxylase [Pseudovibrio sp. JE062]
gi|211958549|gb|EEA93749.1| diaminopimelate decarboxylase [Pseudovibrio sp. JE062]
Length = 423
Score = 36.2 bits (83), Expect = 3.0, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 13/94 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V E LS + + P+ +++N + K GI ++ +
Sbjct: 124 VESEPELKRLSEVASEMGKTAPISLRINPDVDAKTHAKISTGLAANKFGIAWDRARAVYN 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEI 180
Q L V G+ M I + P L +
Sbjct: 184 EAAQLPGLKVTGMDMHIGSQITELGPFDDALERL 217
>gi|307257594|ref|ZP_07539354.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306863897|gb|EFM95820.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
Length = 416
Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 14/114 (12%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
+ ++ + + P+ ++VN + K G+ Q ++
Sbjct: 124 IESIAELHRINEVAGQLGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVTQAREVYR 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + + G+ C + P + L+ ++ + +L L +G
Sbjct: 184 LAKTLPNVKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGIELHHLDLG 237
>gi|165976954|ref|YP_001652547.1| diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|303253397|ref|ZP_07339540.1| diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307246442|ref|ZP_07528515.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307248567|ref|ZP_07530582.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307255425|ref|ZP_07537232.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307259877|ref|ZP_07541591.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|165877055|gb|ABY70103.1| diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|302647742|gb|EFL77955.1| diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306852646|gb|EFM84878.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306854917|gb|EFM87105.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306861609|gb|EFM93596.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306866047|gb|EFM97921.1| Diaminopimelate decarboxylase [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 416
Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 14/114 (12%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
+ ++ + + P+ ++VN + K G+ Q ++
Sbjct: 124 IESIAELHRINEVAGQLGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVTQAREVYR 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L + + + G+ C + P + L+ ++ + +L L +G
Sbjct: 184 LAKTLPNVKITGMDCHIGSQLTELQPFLDATDRLIVLMEQLKEDGIELHHLDLG 237
>gi|114328882|ref|YP_746039.1| alanine racemase [Granulibacter bethesdensis CGDNIH1]
gi|114317056|gb|ABI63116.1| alanine racemase [Granulibacter bethesdensis CGDNIH1]
Length = 360
Score = 36.2 bits (83), Expect = 3.1, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 44/141 (31%), Gaps = 29/141 (20%)
Query: 96 VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL 155
+I + E ++ + LP ++ V+TG I + G+ P + +
Sbjct: 95 LIPALGSLAEIEAWRQEATRREQALPAFLHVDTG--INRLGLDPQERDRLAERPELLDGI 152
Query: 156 NVEGLMC------IPPAMGNP--KPHFYLL--------SEIARECKLTKLSMGMTRDFEL 199
+ +M IP N + F IA + + DF
Sbjct: 153 TLRAIMTHLISAEIPDHDSNTLQRQRFAAACSRLPPAPRSIANSSGIF-----LGPDFA- 206
Query: 200 AIASGATSVRIGSGIFGERPC 220
+ R G+ ++G P
Sbjct: 207 -----SDIARPGAALYGINPV 222
>gi|307720266|ref|YP_003891406.1| Alanine racemase [Sulfurimonas autotrophica DSM 16294]
gi|306978359|gb|ADN08394.1| Alanine racemase [Sulfurimonas autotrophica DSM 16294]
Length = 339
Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 60/153 (39%), Gaps = 28/153 (18%)
Query: 87 VSEIVSLFDVIETV-SREKTASL-----LS--LEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
EI +LF+ I + K AS ++ ++ K ++ V ++V+TG ++GIM
Sbjct: 64 AKEIENLFEYILVLADTPKEASQKIRYTINDIRQIQKFAKNTKVELKVDTGM--CRNGIM 121
Query: 139 PNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMT---- 194
++ ++ ILC Q L +E + + +F L +E + K S +
Sbjct: 122 MDELEEAFILCAQ-QGLQLEAVFTHHSSADEDNRYFDLQNENFKRVKQD--SQVLAKKYS 178
Query: 195 ------RDFELAIASGAT-----SVRIGSGIFG 216
F A + R+G +G
Sbjct: 179 FIPLRFHSFNSAALFRSNDFDEDMARVGIAAYG 211
>gi|121635635|ref|YP_975880.1| diaminopimelate decarboxylase [Neisseria meningitidis FAM18]
gi|120867341|emb|CAM11112.1| diaminopimelate decarboxylase [Neisseria meningitidis FAM18]
gi|325131386|gb|EGC54095.1| diaminopimelate decarboxylase [Neisseria meningitidis M6190]
gi|325137467|gb|EGC60053.1| diaminopimelate decarboxylase [Neisseria meningitidis ES14902]
gi|325204928|gb|ADZ00382.1| diaminopimelate decarboxylase [Neisseria meningitidis M01-240355]
Length = 414
Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 12/74 (16%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVIL 148
+ + + PV ++VN + K GI +
Sbjct: 117 ESIPEIDRIQKVAARLGKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRH 176
Query: 149 CRQKYQLNVEGLMC 162
Q+ L + G+ C
Sbjct: 177 AAQQPNLKIIGIDC 190
>gi|262183853|ref|ZP_06043274.1| alanine racemase [Corynebacterium aurimucosum ATCC 700975]
Length = 367
Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 28/131 (21%)
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---- 163
+ +I ++ V TG +SG+ + ++ L + V GLM
Sbjct: 104 AHAQALIAAETPTEAFVMVETGM--HRSGVDKHVWEETFRLLADAPHITVLGLMSHFACA 161
Query: 164 ----PPAMGNPKPHFYLLSEIAR----ECKLTKLSMG------MTRDFELAIASGATSVR 209
P + + F +AR EC L L+ + FE VR
Sbjct: 162 DEPEHPHNDHQESEFRQALALAREVGLECPLNHLANSPAALTRPSARFE--------QVR 213
Query: 210 IGSGIFGERPC 220
+G ++G P
Sbjct: 214 VGLALYGLEPV 224
>gi|262190944|ref|ZP_06049158.1| alanine racemase [Vibrio cholerae CT 5369-93]
gi|262033181|gb|EEY51705.1| alanine racemase [Vibrio cholerae CT 5369-93]
Length = 407
Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 13/124 (10%)
Query: 109 LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIPPAM 167
L+ + + + V+I +N G + M + K + + L+V G+M P
Sbjct: 149 LAELAKQSGKTIKVHIALNDGGMGRNGIDMTTEAGKKEAVSIATQPSLSVVGIMTHFPNY 208
Query: 168 GNPKPHFYLLSEIAR---------ECKLTKLSMGMTRDFEL--AIASGATSVRIGSGIFG 216
N L++ K ++++ + + + VR G +FG
Sbjct: 209 -NADEVRAKLAQFKESSTWLMQQANLKREEITLHVANSYTALNVPEAQLDMVRPGGVLFG 267
Query: 217 ERPC 220
+ P
Sbjct: 268 DLPT 271
>gi|269926050|ref|YP_003322673.1| alanine racemase [Thermobaculum terrenum ATCC BAA-798]
gi|269789710|gb|ACZ41851.1| alanine racemase [Thermobaculum terrenum ATCC BAA-798]
Length = 376
Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 12/162 (7%)
Query: 29 SLVAVSKM----VDSKKI-RVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQ 83
++AV K +I + L G ++ E + D + +G
Sbjct: 37 KVIAVVKGDAYGHGIIEISKTVLDAGAWGLGVARVSEGL---LLRSSGIDAPIIVLGYSS 93
Query: 84 SNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK 143
++ + V+ I +VS EK + + R ++++V+TG + G+
Sbjct: 94 EQEIKQAVASDLAI-SVSTEKMLDWILATAREVGRIPRIHLEVDTGMR--RLGVKFEDAA 150
Query: 144 DFVILCRQKYQLNVEGLMCIPPAMGNPKPH-FYLLSEIAREC 184
V + +EG+ + +P+ F + ++
Sbjct: 151 QIVHYIHGTNSVYLEGIFTHFASADDPEGFLFKRQLSMFQDL 192
>gi|218531665|ref|YP_002422481.1| Orn/DAP/Arg decarboxylase 2 [Methylobacterium chloromethanicum CM4]
gi|218523968|gb|ACK84553.1| Orn/DAP/Arg decarboxylase 2 [Methylobacterium chloromethanicum CM4]
Length = 428
Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 11/83 (13%), Positives = 25/83 (30%), Gaps = 12/83 (14%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVN-----------TGYEIQKSGIMPNQTKDF 145
I +RE+ ++ + + V +++N G + G +
Sbjct: 134 IHLENREEIV-RVAAAAERHGVRVRVALRINPGATAQGGAMRMGGKPSPFGFDEEDIEAA 192
Query: 146 VILCRQKYQLNVEGLMCIPPAMG 168
+ +L + GL G
Sbjct: 193 IDTVEAAPRLRLVGLHLFAGTQG 215
>gi|76163143|gb|ABA40893.1| SJCHGC08867 protein [Schistosoma japonicum]
Length = 60
Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 96 VIETVSREKTASLLSLEMI-KQSRFLPVYIQVNTGYE 131
++ET+ A +L L + IQVNT E
Sbjct: 1 MVETLDSISHAEILDSLWALNHQMPLKIMIQVNTSGE 37
>gi|32267015|ref|NP_861047.1| alanine racemase [Helicobacter hepaticus ATCC 51449]
gi|32263067|gb|AAP78113.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 344
Score = 36.2 bits (83), Expect = 3.2, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 19/112 (16%)
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEI 180
V ++VN G ++GI ++ +FV L + LN+ G+ + F E
Sbjct: 107 NVELKVNAGM--NRNGIQASEISEFVELILHR-GLNLIGVFSHNGYGDDIDEEFERTQER 163
Query: 181 ARECKLTKLSMGMTRDFEL----------AIASGATS------VRIGSGIFG 216
K + F L AI + VRIG +G
Sbjct: 164 FALIKQEIKELAQKYGFPLPRFHSLSSSGAIREAMNNNINDDLVRIGIAAYG 215
>gi|288962767|ref|YP_003453061.1| alanine racemase [Azospirillum sp. B510]
gi|288915033|dbj|BAI76517.1| alanine racemase [Azospirillum sp. B510]
Length = 375
Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 27/242 (11%), Positives = 62/242 (25%), Gaps = 49/242 (20%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKK--------IRVALSCGQVIF 53
++ + ++ + AV K + + + G F
Sbjct: 22 AVVANWAQLRDRVAPAECS-----------AVVK---ADAYGLGVARVVPALAAAGCRTF 67
Query: 54 AENKL----QEAKKKWIPLRK-EWDVQLRFIGSLQSN-----KVSEIVSLFDVIETVSRE 103
+ +EA L Q+ +G + + I+ + + + ++
Sbjct: 68 ----VVAQFEEALAVRRALEPVAPQAQVFSLGGMPPGCEGEFLANRILPVLNHLSGIASW 123
Query: 104 KTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC- 162
+ + LP V+ + + G+ P++ D ++V M
Sbjct: 124 R------AFAASRGEVLPAV--VHIDTGMNRLGLGPDELDDLAAHPEWLEGIDVRYWMTH 175
Query: 163 --IPPAMGNP--KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGER 218
NP + K S + R G ++G
Sbjct: 176 LACAEDFDNPMNGEQLDRFRDALARLPKAKASFANSSGIFHGKDYHFDLARPGCALYGVN 235
Query: 219 PC 220
P
Sbjct: 236 PT 237
>gi|227820182|ref|YP_002824153.1| metal-activated pyridoxal enzyme [Sinorhizobium fredii NGR234]
gi|227339181|gb|ACP23400.1| metal-activated pyridoxal enzyme [Sinorhizobium fredii NGR234]
Length = 387
Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 3/82 (3%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVE 158
V + LS K L +++++ G + G+ + L
Sbjct: 130 VDDLANVAELSAATQKHGATLECFVEIDCG--AGRCGVTSISAVVALADAVNGAPGLTFA 187
Query: 159 GLMCIPPAMGNPKPHFYLLSEI 180
G+ AM + + +++
Sbjct: 188 GIQAYQGAMQHIDKYEDRKAKL 209
>gi|258405606|ref|YP_003198348.1| alanine racemase [Desulfohalobium retbaense DSM 5692]
gi|257797833|gb|ACV68770.1| alanine racemase [Desulfohalobium retbaense DSM 5692]
Length = 390
Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 18/167 (10%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIFAENKLQEA 61
L+ I ++AV K + ++ A L G ++ E
Sbjct: 12 LEAIAHNISEIRNAVGFGP---QIMAVVKANAYGHGAVEVAQASLRAGASWLGVARVAEG 68
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLP 121
+ + L G+ SE+++ D+ +TVS A L+ Q + L
Sbjct: 69 IELREAGIAAPILVL---GTSPPECASELLAW-DLRQTVSGLDDARALARHARNQDKTLQ 124
Query: 122 VYIQVNTGYE------IQKSGIMPNQTKDFVILCRQKYQLNVEGLMC 162
V+++V+TG + G + + V+ +Q + +EG+
Sbjct: 125 VHLKVDTGMGRLGLLAGPELGGDFDAAGEEVVAIQQLSGIALEGIFT 171
>gi|161869233|ref|YP_001598399.1| diaminopimelate decarboxylase [Neisseria meningitidis 053442]
gi|161594786|gb|ABX72446.1| diaminopimelate decarboxylase [Neisseria meningitidis 053442]
gi|325127395|gb|EGC50328.1| diaminopimelate decarboxylase [Neisseria meningitidis N1568]
gi|325143686|gb|EGC66005.1| diaminopimelate decarboxylase [Neisseria meningitidis M01-240013]
Length = 414
Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 12/74 (16%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVIL 148
+ + + PV ++VN + K GI +
Sbjct: 117 ESIPEIDRIQKVAARLGKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRH 176
Query: 149 CRQKYQLNVEGLMC 162
Q+ L + G+ C
Sbjct: 177 AAQQPNLKIIGIDC 190
>gi|28867441|ref|NP_790060.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|28850675|gb|AAO53755.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tomato str.
DC3000]
Length = 412
Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECK 185
NTG E K GI +D + L Y+L++ GL M I + + L ++
Sbjct: 150 NTGGENSKHGIWHTHLQDALTLV-HYYRLHLVGLHMHIGSGVD-----YQHLQQVC--ST 201
Query: 186 LTKLSMGMTRDFELAIASG 204
+ +L + M D E AI++G
Sbjct: 202 MAELVVEMDHDIE-AISAG 219
>gi|319409711|emb|CBY90016.1| diaminopimelate decarboxylase (DAP decarboxylase) [Neisseria
meningitidis WUE 2594]
Length = 414
Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 12/74 (16%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVIL 148
+ + + PV ++VN + K GI +
Sbjct: 117 ESIPEIDRIQKVAARLGKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRH 176
Query: 149 CRQKYQLNVEGLMC 162
Q+ L + G+ C
Sbjct: 177 AAQQPNLKIIGIDC 190
>gi|227832290|ref|YP_002833997.1| Alanine racemase [Corynebacterium aurimucosum ATCC 700975]
gi|227453306|gb|ACP32059.1| Alanine racemase [Corynebacterium aurimucosum ATCC 700975]
Length = 365
Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 28/131 (21%)
Query: 108 LLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCI---- 163
+ +I ++ V TG +SG+ + ++ L + V GLM
Sbjct: 102 AHAQALIAAETPTEAFVMVETGM--HRSGVDKHVWEETFRLLADAPHITVLGLMSHFACA 159
Query: 164 ----PPAMGNPKPHFYLLSEIAR----ECKLTKLSMG------MTRDFELAIASGATSVR 209
P + + F +AR EC L L+ + FE VR
Sbjct: 160 DEPEHPHNDHQESEFRQALALAREVGLECPLNHLANSPAALTRPSARFE--------QVR 211
Query: 210 IGSGIFGERPC 220
+G ++G P
Sbjct: 212 VGLALYGLEPV 222
>gi|159464022|ref|XP_001690241.1| diaminopimelate decarboxylase [Chlamydomonas reinhardtii]
gi|158284229|gb|EDP09979.1| diaminopimelate decarboxylase [Chlamydomonas reinhardtii]
Length = 473
Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 12/73 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
+ E ++ K + + V +++N + K GI + K F+
Sbjct: 181 IDSEFDLENIAAAARKTGKKVSVLLRINPDVDPQVHSYVSTGLASSKFGIRNSHIKWFLD 240
Query: 148 LCRQKYQLNVEGL 160
R++ L + G+
Sbjct: 241 EIRKEPLLELVGV 253
>gi|255101739|ref|ZP_05330716.1| ribulose-phosphate 3-epimerase [Clostridium difficile QCD-63q42]
Length = 223
Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 12/102 (11%)
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL 186
N K+G++ N + L++ LM + P G +L +I +E K
Sbjct: 103 NIKSHGIKAGVVLNPATPVDTIKHVLPDLDMVLLMSVNPGFGGQSFIPCVLDKI-KELKA 161
Query: 187 TKLSMGMTRDFEL-----------AIASGATSVRIGSGIFGE 217
S G+ D E+ + +GA + GS IFG
Sbjct: 162 IIDSQGLNIDIEVDGGISPKNVAEVVQAGANIIVAGSAIFGS 203
>gi|126737976|ref|ZP_01753706.1| hypothetical protein RSK20926_20082 [Roseobacter sp. SK209-2-6]
gi|126721369|gb|EBA18073.1| hypothetical protein RSK20926_20082 [Roseobacter sp. SK209-2-6]
Length = 382
Score = 36.2 bits (83), Expect = 3.3, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 23/131 (17%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNV 157
+ + A ++ K + +P I+V+ +SG P + + + +
Sbjct: 112 LDSPEQAKAVASASRKHGQAIPALIEVDCDG--HRSGTAPG-APELIEIGHILEGGGACL 168
Query: 158 EGLMCIPPAMGNP--KPHFYLLSEIARE-------------CKLTKLSMGMTRDFELAIA 202
G++ + +E R +S+G T AI
Sbjct: 169 RGVLTHAGESYAVCGRAAHAKCAEAERRAAVRAVEVLSQAGLPCPVVSIGSTPT-AHAIE 227
Query: 203 --SGATSVRIG 211
G T +R G
Sbjct: 228 KAEGITEIRAG 238
>gi|331017932|gb|EGH97988.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. lachrymans
str. M302278PT]
Length = 412
Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECK 185
NTG E K GI +D + L Y+L++ GL M I + + L ++
Sbjct: 150 NTGGENSKHGIWHTHLQDALTLV-HYYRLHLVGLHMHIGSGVD-----YQHLQQVC--ST 201
Query: 186 LTKLSMGMTRDFELAIASG 204
+ +L + M D E AI++G
Sbjct: 202 MAELVVEMDHDIE-AISAG 219
>gi|330984813|gb|EGH82916.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. lachrymans
str. M301315]
Length = 415
Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + P+ ++VN + K GI +D I
Sbjct: 124 VESTDELERLQEVAAELDVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYI 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
Q L V G+ C I + +P L +
Sbjct: 184 RASQLPNLEVIGVDCHIGSQLTTLEPFIDALDRLLD 219
>gi|319792881|ref|YP_004154521.1| alanine racemase domain protein [Variovorax paradoxus EPS]
gi|315595344|gb|ADU36410.1| alanine racemase domain protein [Variovorax paradoxus EPS]
Length = 379
Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 19/132 (14%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF-VILCRQKYQLNVEG 159
+A ++ V I+V+T +SGI P+ V +++ G
Sbjct: 111 DGVASARAIAEFGRANGEAFDVLIEVDTDG--HRSGIRPDDDVLLEVAHVLHGGGMHLAG 168
Query: 160 LMCIPPAM-------------GNPKPHFYLLSEIARECKL--TKLSMGMTRDFELAIAS- 203
+M + + ++ R+ L +S+G T +A
Sbjct: 169 VMTHAGSSYDLDTPEALRAMAEQERAGCVRAAQRLRDAGLPCPIVSVGSTPTALMAERLD 228
Query: 204 GATSVRIGSGIF 215
G T VR G +F
Sbjct: 229 GVTEVRAGVYVF 240
>gi|302537962|ref|ZP_07290304.1| ABC transporter ATP-binding component [Streptomyces sp. C]
gi|302446857|gb|EFL18673.1| ABC transporter ATP-binding component [Streptomyces sp. C]
Length = 260
Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 31 VAVSKMVDSKKIRVALSCGQVIF---AENKLQEAKKKW 65
+A +K D I AL+ G F +EN+++E ++K
Sbjct: 176 IAAAKDHDVLMIDEALATGDRSFQVRSENRIRELREKA 213
>gi|158426283|ref|YP_001527575.1| diaminopimelate decarboxylase [Azorhizobium caulinodans ORS 571]
gi|158333172|dbj|BAF90657.1| diaminopimelate decarboxylase [Azorhizobium caulinodans ORS 571]
Length = 420
Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 16/101 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E S LS R + I++N TG K GI ++ +
Sbjct: 124 VESEPELSALSQVATAMGRTANISIRINPDVDAKTHAKISTGKSENKFGIPISRARTVYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGN---PKPHFYLLSEIAREC 184
L V G+ M I + + + L++E+AR+
Sbjct: 184 EAATLPGLKVAGIDMHIGSQITDLGPFENATLLMAELARDL 224
>gi|71738109|ref|YP_277093.1| diaminopimelate decarboxylase [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257482608|ref|ZP_05636649.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tabaci ATCC
11528]
gi|289624630|ref|ZP_06457584.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
gi|289651144|ref|ZP_06482487.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. aesculi
str. 2250]
gi|71558662|gb|AAZ37873.1| diaminopimelate decarboxylase [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320326562|gb|EFW82613.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. glycinea
str. B076]
gi|320331372|gb|EFW87313.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330870014|gb|EGH04723.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330881320|gb|EGH15469.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. glycinea
str. race 4]
gi|331012751|gb|EGH92807.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tabaci ATCC
11528]
Length = 415
Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + P+ ++VN + K GI +D I
Sbjct: 124 VESTDELERLQEVAAELDVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYI 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
Q L V G+ C I + +P L +
Sbjct: 184 RASQLPNLEVIGVDCHIGSQLTTLEPFIDALDRLLD 219
>gi|68536438|ref|YP_251143.1| hypothetical protein jk1353 [Corynebacterium jeikeium K411]
gi|68264037|emb|CAI37525.1| lysA [Corynebacterium jeikeium K411]
Length = 470
Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 14/94 (14%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQV------------NTGYEIQKSGIMPN--QTKDF 145
V + LS + + V ++V T +E QK G
Sbjct: 158 VDSLQEIEALSTVAGELGKSQDVLVRVTPGVHVDTHEFIATSHEDQKFGFSLASGAAHRA 217
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ C + + GL C + F L +E
Sbjct: 218 AMACHTADGVRLRGLHCHVGSQVFEASGFALAAE 251
>gi|332826772|gb|EGJ99589.1| diaminopimelate decarboxylase [Dysgonomonas gadei ATCC BAA-286]
Length = 385
Score = 36.2 bits (83), Expect = 3.4, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 29/99 (29%), Gaps = 12/99 (12%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V +++ K+ + V +++N TG K G +
Sbjct: 113 VESLPELEVINELASKKGKLAQVALRINPNVDAHTHEYITTGLNENKFGFAMAHLDAVIE 172
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL 186
+ + + G+ + F L E E ++
Sbjct: 173 KLKSLKAIKLIGIHFHIGSQIEEAETFEPLCERVNELQV 211
>gi|116249082|ref|YP_764923.1| putative alanine racemase [Rhizobium leguminosarum bv. viciae 3841]
gi|109940037|sp|Q9RAE7|ALR2_RHIL3 RecName: Full=Alanine racemase, catabolic
gi|115253732|emb|CAK12125.1| putative alanine racemase [Rhizobium leguminosarum bv. viciae 3841]
Length = 377
Score = 36.2 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 37/192 (19%), Positives = 68/192 (35%), Gaps = 21/192 (10%)
Query: 39 SKKI-RVALSCGQVIFAENKL-Q--EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL- 93
++++ R S G F + Q EA + L D Q+ + LQ +
Sbjct: 59 AERVARTLYSEGCRHF---FVAQFVEAVRLRPALAH--DAQIFVLNGLQPGNEIACAEMG 113
Query: 94 -FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK 152
V+ ++++ + S R LP +Q +TG + G + ++ R
Sbjct: 114 IVPVLNSLAQWR---QWSAAARILKRCLPAVLQFDTGM--SRLGFPREERRELAAALRDG 168
Query: 153 YQLNVEGLM---CIPPAMGNPK--PHFYLLSEIARECKLTKLSMGMTRDFELAIASGATS 207
+ + +M MG+ + F +S IA E +S + L A
Sbjct: 169 SNVEILFIMSHLASADDMGSEQNGEQFAEMSRIADEFPGFDISFANSGGVFLGEAYYGVL 228
Query: 208 VRIGSGIFGERP 219
R G ++G P
Sbjct: 229 ARPGIALYGGAP 240
>gi|3913032|sp|O30746|ALR2_KLEAE RecName: Full=Alanine racemase, catabolic
gi|2360966|gb|AAC38140.1| alanine racemase [Klebsiella aerogenes]
Length = 356
Score = 36.2 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 13/132 (9%)
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
L + + + K +L+ K L +Y++VN+G + G MP + R
Sbjct: 95 RLPTSVHSNWQIK-----ALQQAKLRAPLDIYLKVNSGM--NRLGFMPERVHTVWQQLRA 147
Query: 152 KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI----ASGATS 207
+ LM NP+ + I + + + A +
Sbjct: 148 ISNVGEMTLMSHFAEAENPQGIVEPMRRIEQAAEGLDCPRSLAN--SAATLWHPEAHFDW 205
Query: 208 VRIGSGIFGERP 219
VR G ++G P
Sbjct: 206 VRPGIVLYGASP 217
>gi|23012658|ref|ZP_00052688.1| COG0019: Diaminopimelate decarboxylase [Magnetospirillum
magnetotacticum MS-1]
Length = 326
Score = 36.2 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 14/75 (18%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNT-----------GYEIQKSGIMPNQTKDF 145
+E++ + A+ + + LPV ++VN G + GI D
Sbjct: 38 VESLHSLRLANAV---AERSGAILPVLLRVNLAGPVPGATLTMGGAATQFGIEQASIPDA 94
Query: 146 VILCRQKYQLNVEGL 160
+ R L EG
Sbjct: 95 IATLRDCRALRFEGF 109
>gi|331005625|ref|ZP_08328994.1| Diaminopimelate decarboxylase [gamma proteobacterium IMCC1989]
gi|330420550|gb|EGG94847.1| Diaminopimelate decarboxylase [gamma proteobacterium IMCC1989]
Length = 417
Score = 36.2 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 13/104 (12%), Positives = 29/104 (27%), Gaps = 20/104 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
+ S L P+ ++VN + K G+ + +
Sbjct: 124 IESIPELSRLQTVAESMGVQAPISLRVNPDVDAETHPYISTGLKENKFGVDIDHAVEIYQ 183
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARE 183
L ++G L + P + L+ ++A +
Sbjct: 184 HAATLPNLTIKGVDCHIGSQLTSVAPFLDALDRVLALIDQLAEQ 227
>gi|327483026|gb|AEA77433.1| Diaminopimelate decarboxylase [Vibrio cholerae LMA3894-4]
Length = 417
Score = 36.2 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI ++
Sbjct: 125 VESEPELLRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVYR 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
L L+V G L + P + L+ + A + L +G
Sbjct: 185 LAHSLPNLDVHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVG 238
>gi|167949693|ref|ZP_02536767.1| alanine racemase [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 182
Score = 36.2 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 6/105 (5%)
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP----KPHF 174
+ V+++V++G + G P +Q L V LM +P
Sbjct: 53 PIEVWLKVDSGM--HRLGFRPEAVAAVAQRLQQTPALGVLHLMTHLANADDPQDPANQDQ 110
Query: 175 YLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERP 219
+ + +LS+ + VR G ++G P
Sbjct: 111 CVRFDAIDTTPFAQLSIANSAGLLAFPECQRDWVRPGIMLYGVSP 155
>gi|256026803|ref|ZP_05440637.1| Serine racemase [Fusobacterium sp. D11]
gi|289764799|ref|ZP_06524177.1| serine racemase [Fusobacterium sp. D11]
gi|289716354|gb|EFD80366.1| serine racemase [Fusobacterium sp. D11]
Length = 369
Score = 36.2 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 39/118 (33%), Gaps = 17/118 (14%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
+ + A ++ ++ + I V++G + + G+ F ++ L + G
Sbjct: 107 LDSLEAAIKINKIAETENIIINYTIIVDSG--LHRFGVSLKNLLTFAEELKKLKYLKLRG 164
Query: 160 L-------------MCIPPAMGNPKPHFYLLSEIARECK--LTKLSMGMTRDFELAIA 202
+ I + + E+ + L ++ G T FE A+
Sbjct: 165 ISSHPGHVYSSTCEADIHQYVLDECETLRKAKELLEKEGYYLKYITSGSTPTFEEAVK 222
>gi|254469935|ref|ZP_05083340.1| alanine racemase, N-terminal domain protein [Pseudovibrio sp.
JE062]
gi|211961770|gb|EEA96965.1| alanine racemase, N-terminal domain protein [Pseudovibrio sp.
JE062]
Length = 375
Score = 36.2 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 25/129 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ--TKDFVILCRQKYQLNV 157
+ + A+ LS M VY++V+ ++G+ +Q D + L
Sbjct: 106 LDSTEMATHLST-MTLDGPKPRVYLEVDVDG--HRTGVKADQQRAVDVARILANASNLEF 162
Query: 158 EGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIAS----------GATS 207
G+M + L A + + L++ + AI G+T
Sbjct: 163 AGVMAHGGGVSYAANGQQELEAAAEQERTCTLAV------KDAILEAGLPCPQVSIGSTP 216
Query: 208 VRIGSGIFG 216
+ +FG
Sbjct: 217 ----TALFG 221
>gi|325982948|ref|YP_004295350.1| diaminopimelate decarboxylase [Nitrosomonas sp. AL212]
gi|325532467|gb|ADZ27188.1| diaminopimelate decarboxylase [Nitrosomonas sp. AL212]
Length = 417
Score = 36.2 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V E L+ + PV +++N + K GI + +
Sbjct: 127 VESEAELIALNRIAKDMDKLAPVSLRINPDVDAKTHPYISTGLKENKFGIPAREAERIYK 186
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
+ GL C + P M K +LL + A+ ++ L +G
Sbjct: 187 SAHLYPNIRFIGLDCHIGSQLTELEPFMQASKKMLHLLDSLQAQNLEIEHLDLG 240
>gi|154686579|ref|YP_001421740.1| hypothetical protein RBAM_021480 [Bacillus amyloliquefaciens FZB42]
gi|154352430|gb|ABS74509.1| LysA [Bacillus amyloliquefaciens FZB42]
Length = 439
Score = 36.2 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 32/178 (17%), Positives = 52/178 (29%), Gaps = 57/178 (32%)
Query: 32 AVSKMVDSKKIRVALSCGQVIF-AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEI 90
AV+ + +I F NK +E L+ D IG + +
Sbjct: 95 AVAAGFPADRI---------HFHGNNKSEE------ELKMALD---HQIGCI-------V 129
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQ------------VNTGYEIQKSGIM 138
V F I SLL+ K R + V ++ + TG E K G
Sbjct: 130 VDNFYEI---------SLLAELCRKSGRTMDVLLRITPGVEAHTHDYITTGQEDSKFGFD 180
Query: 139 P--NQTKDFVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARECKL 186
Q + + Q + + G+ C + + F L+E
Sbjct: 181 LHNGQIEKAIEQVLQSDHIRLLGVHCHIGSQIFDTAGFVLAAEKIFAKLNEWRESFGF 238
>gi|134045937|ref|YP_001097423.1| hypothetical protein MmarC5_0901 [Methanococcus maripaludis C5]
gi|132663562|gb|ABO35208.1| TPR repeat-containing protein [Methanococcus maripaludis C5]
Length = 409
Score = 36.2 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 56 NKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLE 112
N+ EA +K + L DV IG LQ N + E++S + A L+ E
Sbjct: 313 NRSIEAYEKAVELTPNDDVLWSNIGYLQYNNKNYN-------ESISYFEKALELNSE 362
>gi|332139612|ref|YP_004425350.1| putative diaminopimelate decarboxylase [Alteromonas macleodii str.
'Deep ecotype']
gi|327549634|gb|AEA96352.1| putative diaminopimelate decarboxylase [Alteromonas macleodii str.
'Deep ecotype']
Length = 416
Score = 36.2 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 20/117 (17%)
Query: 87 VSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QK 134
+ + + V E ++ + P+ +++N + K
Sbjct: 111 IRYALEQGIMCFNVESEPELHRINEVAGEVGVKAPISLRINPDVDAKTHPYISTGLKANK 170
Query: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE 183
GI + L LNV G+ C I P + + L+ E+A
Sbjct: 171 FGIARERALATYELAASLPNLNVVGMDCHIGSQLTEIGPFVDALERLLVLIDELAER 227
>gi|320104390|ref|YP_004179981.1| alanine racemase domain-containing protein [Isosphaera pallida ATCC
43644]
gi|319751672|gb|ADV63432.1| alanine racemase domain protein [Isosphaera pallida ATCC 43644]
Length = 390
Score = 36.2 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 99 TVSREK----TASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKY 153
T+ + ++ + +PV I +N G ++GIMP+ + +
Sbjct: 127 TLDHLRGLTDLEETVARHGGPHASPVPVLIDLNVGM--NRTGIMPDDRAIELALKVADSP 184
Query: 154 QLNVEGLMCIPPAMGNPKP 172
L+ +GL + + P
Sbjct: 185 YLSFDGLHAYDGHIRDENP 203
>gi|220933233|ref|YP_002512132.1| diaminopimelate decarboxylase [Thioalkalivibrio sp. HL-EbGR7]
gi|219994543|gb|ACL71145.1| diaminopimelate decarboxylase [Thioalkalivibrio sp. HL-EbGR7]
Length = 414
Score = 36.2 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 31/114 (27%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V E + L+ + PV I+VN + K G+
Sbjct: 124 VESEAELARLNGVAGELGVEAPVSIRVNPDVDARTHPYISTGLKENKFGVDIRVAPALYR 183
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
+ V G L + P + K L + A L L +G
Sbjct: 184 QAADMAHIRVVGVDCHIGSQLTGLSPFVDALKRVLELARTLEADGIGLDHLDLG 237
>gi|91778101|ref|YP_553309.1| metal-activated pyridoxal protein [Burkholderia xenovorans LB400]
gi|91690761|gb|ABE33959.1| Metal-activated pyridoxal enzyme [Burkholderia xenovorans LB400]
Length = 379
Score = 36.2 bits (83), Expect = 3.7, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 19/114 (16%)
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDF-VILCRQKYQLNVEGLMC----------- 162
+ + V I+V+T +SGI P Q V + + V G+M
Sbjct: 122 QHGQTFEVCIEVDTDG--HRSGITPEQDTLLEVGRILHENGVKVGGVMTHAGSSYELDTP 179
Query: 163 --IPPAMGNPKPHFYLLSEIARECKL--TKLSMGMTRDFELAIA-SGATSVRIG 211
+ + ++ RE + +S+G T A G T VR G
Sbjct: 180 EALAALAEQERAGCVRAAQRLREAGIACPAVSVGSTPTALAATQLEGVTEVRAG 233
>gi|294339132|emb|CAZ87486.1| Alanine racemase, catabolic [Thiomonas sp. 3As]
Length = 367
Score = 36.2 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 41/138 (29%), Gaps = 11/138 (7%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
+ ++ V + L++ +R V++++NTG + G P
Sbjct: 89 ALCERLNLWHVVHCREQIDWLAVHRG--NRTHRVFLKMNTGM--NRVGFSPEAYAAAWER 144
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASG---- 204
Q+ M L+ AR ++ A+ G
Sbjct: 145 LNALPQVGEITHMTHFACADEAGGIDEALARFARGVGHLPGERTLSNS-AAALVHGADPR 203
Query: 205 --ATSVRIGSGIFGERPC 220
+ VR G ++G P
Sbjct: 204 VASDWVRPGIALYGSSPT 221
>gi|255656554|ref|ZP_05401963.1| ribulose-phosphate 3-epimerase [Clostridium difficile QCD-23m63]
gi|296449994|ref|ZP_06891758.1| ribulose-phosphate 3-epimerase [Clostridium difficile NAP08]
gi|296878375|ref|ZP_06902383.1| ribulose-phosphate 3-epimerase [Clostridium difficile NAP07]
gi|296261264|gb|EFH08095.1| ribulose-phosphate 3-epimerase [Clostridium difficile NAP08]
gi|296430673|gb|EFH16512.1| ribulose-phosphate 3-epimerase [Clostridium difficile NAP07]
Length = 223
Score = 36.2 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 12/102 (11%)
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL 186
N K+G++ N + L++ LM + P G +L +I +E K
Sbjct: 103 NIKSHGIKAGVVLNPATPIDTIKHVLPDLDMVLLMSVNPGFGGQSFIPCVLDKI-KELKA 161
Query: 187 TKLSMGMTRDFEL-----------AIASGATSVRIGSGIFGE 217
S G+ D E+ + +GA + GS IFG
Sbjct: 162 IIDSQGLNIDIEVDGGISPKNVDKVVQAGANVIVAGSAIFGS 203
>gi|302381729|ref|YP_003817552.1| diaminopimelate decarboxylase [Brevundimonas subvibrioides ATCC
15264]
gi|302192357|gb|ADK99928.1| diaminopimelate decarboxylase [Brevundimonas subvibrioides ATCC
15264]
Length = 424
Score = 36.2 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 16/108 (14%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V L ++ + I+VN TG E K GI ++
Sbjct: 129 VESPAELDRLIAVAAEKGACPDIAIRVNPKIGAGGHAKITTGGEGDKFGIPADEALALYA 188
Query: 148 LCRQKYQLNVEGLMC-IPPAMGN---PKPHFYLLSEIARECKLTKLSM 191
+ GL C I + + + F LL E+ + LS+
Sbjct: 189 RAAASPHVTPVGLACHIGSQIIDLTPLEAAFRLLREMTLTLRGQGLSV 236
>gi|260577571|ref|ZP_05845510.1| diaminopimelate decarboxylase [Corynebacterium jeikeium ATCC 43734]
gi|258604295|gb|EEW17533.1| diaminopimelate decarboxylase [Corynebacterium jeikeium ATCC 43734]
Length = 470
Score = 36.2 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 14/94 (14%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQV------------NTGYEIQKSGIMPN--QTKDF 145
V + LS + + V ++V T +E QK G
Sbjct: 158 VDSLQEIEALSTVAGELGKSQDVLVRVTPGVHVDTHEFIATSHEDQKFGFSLASGAAHRA 217
Query: 146 VILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSE 179
+ C + + GL C + F L +E
Sbjct: 218 AMACHTADGVRLRGLHCHVGSQVFEASGFALAAE 251
>gi|5805088|emb|CAB53547.1| alanine racemase [Rhizobium leguminosarum bv. viciae]
Length = 354
Score = 36.2 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 37/192 (19%), Positives = 68/192 (35%), Gaps = 21/192 (10%)
Query: 39 SKKI-RVALSCGQVIFAENKL-Q--EAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSL- 93
++++ R S G F + Q EA + L D Q+ + LQ +
Sbjct: 36 AERVARTLYSEGCRHF---FVAQFVEAVRLRPALAH--DAQIFVLNGLQPGNEIACAEMG 90
Query: 94 -FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK 152
V+ ++++ + S R LP +Q +TG + G + ++ R
Sbjct: 91 IVPVLNSLAQWR---QWSAAARILKRCLPAVLQFDTGM--SRLGFPREERRELAAALRDG 145
Query: 153 YQLNVEGLM---CIPPAMGNPK--PHFYLLSEIARECKLTKLSMGMTRDFELAIASGATS 207
+ + +M MG+ + F +S IA E +S + L A
Sbjct: 146 SNVEILFIMSHLASADDMGSEQNGEQFAEMSRIADEFPGFDISFANSGGVFLGEAYYGVL 205
Query: 208 VRIGSGIFGERP 219
R G ++G P
Sbjct: 206 ARPGIALYGGAP 217
>gi|193212450|ref|YP_001998403.1| diaminopimelate decarboxylase [Chlorobaculum parvum NCIB 8327]
gi|193085927|gb|ACF11203.1| diaminopimelate decarboxylase [Chlorobaculum parvum NCIB 8327]
Length = 431
Score = 36.2 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 19/113 (16%)
Query: 106 ASLLSLEMIKQSRFLPVYIQV--NTGYEIQ----------KSGIMPNQTKDFVILCRQKY 153
++ + + V ++V N E K GI + L +
Sbjct: 148 LKAINRVAARLGKVAQVGVRVTPNVTAETHPYITTGDSKEKFGIDEAGLAEVFDLFKALT 207
Query: 154 QLNVEGL-MCIPPAMGNPKPHFYLLSEI------ARECKLTKLSMGMTRDFEL 199
L + GL M I + +P+ + ++ AR + + F
Sbjct: 208 NLELHGLDMHIGSQIFDPEYYVAATQKLLEVLESARHLGFDIKWLDLGGGFPA 260
>gi|94265420|ref|ZP_01289172.1| Diaminopimelate decarboxylase [delta proteobacterium MLMS-1]
gi|94266455|ref|ZP_01290148.1| Diaminopimelate decarboxylase [delta proteobacterium MLMS-1]
gi|93452933|gb|EAT03438.1| Diaminopimelate decarboxylase [delta proteobacterium MLMS-1]
gi|93454077|gb|EAT04412.1| Diaminopimelate decarboxylase [delta proteobacterium MLMS-1]
Length = 416
Score = 36.2 bits (83), Expect = 3.8, Method: Composition-based stats.
Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 20/101 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ------------KSGIMPNQTKDFVI 147
+ + + + + + V +VN + Q K GI +
Sbjct: 124 LESAQELTAIQQCAAELGQTARVSFRVNPDVDPQTHAYISTGLAENKFGIAIEEALAVYK 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEI 180
RQ + + GL C + P + ++E+
Sbjct: 184 EARQMANVEIVGLSCHIGSQLTQVSPFVDTVDKLKKFMAEL 224
>gi|281419868|ref|ZP_06250867.1| diaminopimelate decarboxylase [Prevotella copri DSM 18205]
gi|281405995|gb|EFB36675.1| diaminopimelate decarboxylase [Prevotella copri DSM 18205]
Length = 385
Score = 36.2 bits (83), Expect = 3.9, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 16/106 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V +++ KQ++ V ++N TG K GI + +
Sbjct: 113 VESIPELEIINELAEKQNKIAQVCFRINPDVGAHTHANITTGLAENKFGIAMRDMEAVIE 172
Query: 148 LCRQKYQLNVEGL-MCIPP---AMGNPKPHFYLLSEIARECKLTKL 189
+ + GL I MG+ + ++E+ + + +
Sbjct: 173 EAAKMKNIQFLGLHFHIGSQILDMGDFEALCNRINELQNQLEAHHI 218
>gi|315125206|ref|YP_004067209.1| diaminopimelate decarboxylase [Pseudoalteromonas sp. SM9913]
gi|315013719|gb|ADT67057.1| diaminopimelate decarboxylase [Pseudoalteromonas sp. SM9913]
Length = 417
Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 13/94 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V +S + + P+ I+VN + K GI
Sbjct: 124 VESISELERISEVACELNLDAPISIRVNPDIDAKTHPYISTGLKENKFGIGIETALSVYQ 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEI 180
LN+ G+ C I + KP L ++
Sbjct: 184 HAASLPGLNIVGVDCHIGSQLTQTKPFLEALDKL 217
>gi|83644553|ref|YP_432988.1| alanine racemase [Hahella chejuensis KCTC 2396]
gi|123534099|sp|Q2SLB1|ALR_HAHCH RecName: Full=Alanine racemase
gi|83632596|gb|ABC28563.1| alanine racemase [Hahella chejuensis KCTC 2396]
Length = 374
Score = 35.8 bits (82), Expect = 3.9, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 45/151 (29%)
Query: 95 DVIETVSREKTASLLS--LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK 152
V+ + + S ++ + S + +I++NTG + G+ N+ +Q
Sbjct: 99 WVVHDMEQLDMLSEVAPLRKAGPDSTRMQTWIKLNTGM--NRLGLPLNKLAHVAEKLQQF 156
Query: 153 YQLNVEGLMCIPPAMGNPKPHFYL---LSEIARECKLTKLSMGMTRDFELAIASGAT--- 206
L+V GLM HF L + ++ + GM A+GA
Sbjct: 157 PGLSVIGLMT----------HFACADELDSLLQQRQWRAFQAGMQ-------AAGANGWS 199
Query: 207 ------------------SVRIGSGIFGERP 219
VR G ++G P
Sbjct: 200 YSSANSAALLQYPETHLDWVRPGIAMYGASP 230
>gi|317493899|ref|ZP_07952316.1| diaminopimelate decarboxylase [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316918226|gb|EFV39568.1| diaminopimelate decarboxylase [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 420
Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECK 185
NTG E K GI + + L +Q L + GL M I + + L+++
Sbjct: 156 NTGGENSKHGIWFEELPQALALIKQYD-LELIGLHMHIGSGVD-----YQHLAQVCDTMV 209
Query: 186 LTKLSMGMTRDFELAIASG 204
+ +G D + AI++G
Sbjct: 210 RQVIELG--HDIQ-AISAG 225
>gi|149918225|ref|ZP_01906717.1| alanine racemase [Plesiocystis pacifica SIR-1]
gi|149820985|gb|EDM80392.1| alanine racemase [Plesiocystis pacifica SIR-1]
Length = 402
Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats.
Identities = 36/239 (15%), Positives = 80/239 (33%), Gaps = 43/239 (17%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDS-KKIRVALSCGQVIFAEN 56
+L + L+ + + ++AV K + + R + G A +
Sbjct: 42 ALAHNLRTVQAHVGERC----------RVLAVVKADGYGHGAVESARAFVDAGAWGLAVS 91
Query: 57 KLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQ 116
++E + + + L + +++ + V + LL+ + +
Sbjct: 92 LVEEGVELRQHGVRAPVLVLS---GVHPGS-EDVIVHGALTPVVWSPQHFQLLTSAVRRS 147
Query: 117 SR-FLPVYIQVNTGYEIQKSGIMPNQTKDFVI--LCRQKYQLNVEGLMCIPPAMGNPKPH 173
LPV+I+++TG + G++P + +L +EG+M + +
Sbjct: 148 GAATLPVHIKIDTGM--SRLGVLPEDLGALLDWYQAHAASELRIEGVMTHFACADDAEDA 205
Query: 174 FYLLSEIAR-ECKLTKL--------------SMGMTRDFELAIASGATSVRIGSGIFGE 217
++ R + L L S G+ F A VR G ++G
Sbjct: 206 LTSARQLERFQACLRVLGERRIHPSIRHVCNSAGLV-RFSEA---HLDMVRPGIALYGA 260
>gi|220929910|ref|YP_002506819.1| Orn/DAP/Arg decarboxylase 2 [Clostridium cellulolyticum H10]
gi|220000238|gb|ACL76839.1| Orn/DAP/Arg decarboxylase 2 [Clostridium cellulolyticum H10]
Length = 416
Score = 35.8 bits (82), Expect = 4.0, Method: Composition-based stats.
Identities = 10/72 (13%), Positives = 28/72 (38%), Gaps = 11/72 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE-----------IQKSGIMPNQTKDFVIL 148
+ + A +++ K+ R + + I++N ++ + GI + +
Sbjct: 111 IESLEEAEVINEIADKKGRVVDISIRINPDFDIAGSGIKMSGVASQFGIDQIRLDSVLNE 170
Query: 149 CRQKYQLNVEGL 160
+ LN+ G+
Sbjct: 171 LKALQNLNIMGI 182
>gi|261318416|ref|ZP_05957613.1| alanine racemase [Brucella pinnipedialis B2/94]
gi|261297639|gb|EEY01136.1| alanine racemase [Brucella pinnipedialis B2/94]
Length = 353
Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats.
Identities = 30/201 (14%), Positives = 64/201 (31%), Gaps = 39/201 (19%)
Query: 39 SKKIRVA-LSCGQVIF-----AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVS 92
+ ++ A G F E + + D L + LQ +
Sbjct: 11 ASRVAPAFYEAGCRDFFVAHLGE-------AVALKPFLKPDATLYVLNGLQPGTEAACAR 63
Query: 93 --LFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR 150
+ V+ ++ + + + L + + LP +Q +TG + + G+ + +
Sbjct: 64 EGILPVLNSLEQVENWAAL---ATRLGKKLPALLQFDTG--MSRLGLSAKEFDRLLENVT 118
Query: 151 QKYQLNVEGLMCI--------PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIA 202
+++++ I P N + + + +AR KL F
Sbjct: 119 LLSRIDIK--FAISHLANGDEPGNAANARQLAKMTALLARLPKLPAALANSGGTFL---- 172
Query: 203 SGAT----SVRIGSGIFGERP 219
G T R G ++G P
Sbjct: 173 -GKTYYFDLARPGIALYGIDP 192
>gi|126179859|ref|YP_001047824.1| diaminopimelate decarboxylase [Methanoculleus marisnigri JR1]
gi|125862653|gb|ABN57842.1| diaminopimelate decarboxylase [Methanoculleus marisnigri JR1]
Length = 430
Score = 35.8 bits (82), Expect = 4.1, Method: Composition-based stats.
Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 16/102 (15%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFV 146
+V L + + +VN E+ K GI Q D
Sbjct: 127 SVDSPDELRQLDRAAGAAGTTVEIAFRVNPAIEVPTHPKIATGLATSKFGIPAGQILDAY 186
Query: 147 ILCRQKYQLNVEGLMC-IPPAMGNPKP---HFYLLSEIAREC 184
+ G+ C I + + +P +L ++AR+
Sbjct: 187 REALALEHVKPVGIHCHIGSQILDVEPFAHEVEVLIDVARDL 228
>gi|330000338|ref|ZP_08303687.1| alanine racemase [Klebsiella sp. MS 92-3]
gi|328538021|gb|EGF64193.1| alanine racemase [Klebsiella sp. MS 92-3]
Length = 333
Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 13/132 (9%)
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
L + + + K +L+ K L +Y++VN+G + G MP + R
Sbjct: 72 RLTTSVHSNWQIK-----ALQQAKLRAPLDIYLKVNSGM--NRLGFMPERVHTVWQQLRA 124
Query: 152 KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI----ASGATS 207
+ LM NP+ + I + + + A +
Sbjct: 125 ISNVGEMTLMSHFAEAENPQGIVEPMRRIEQAAEGLDCPRSLAN--SAATLWHPEAHFDW 182
Query: 208 VRIGSGIFGERP 219
VR G ++G P
Sbjct: 183 VRPGIVLYGASP 194
>gi|308175966|ref|YP_003915372.1| hypothetical protein AARI_01650 [Arthrobacter arilaitensis Re117]
gi|307743429|emb|CBT74401.1| conserved hypothetical protein [Arthrobacter arilaitensis Re117]
Length = 396
Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ---KSGIM------PNQTKDFVILCR 150
V E+ L+ K L V ++++ Y + G P Q +
Sbjct: 120 VDTEEQLDLIDRIAPKHG-PLKVALELDAAYYPSSNWRIGAARSPLTRPAQVAELAAEVH 178
Query: 151 QKYQLNVEGLMCI 163
++ ++GLM
Sbjct: 179 RRPNFILDGLMGY 191
>gi|260549303|ref|ZP_05823523.1| diaminopimelate decarboxylase [Acinetobacter sp. RUH2624]
gi|260407709|gb|EEX01182.1| diaminopimelate decarboxylase [Acinetobacter sp. RUH2624]
Length = 416
Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 13/86 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + + + P+ ++VN + K GI + +
Sbjct: 123 VESYAELDRIQKVAARLGKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDAVYETYQ 182
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKP 172
L + G+ C I + KP
Sbjct: 183 YAASLPNLEIVGIDCHIGSQLTETKP 208
>gi|169628525|ref|YP_001702174.1| diaminopimelate decarboxylase [Mycobacterium abscessus ATCC 19977]
gi|169240492|emb|CAM61520.1| Probable diaminopimelate decarboxylase [Mycobacterium abscessus]
Length = 470
Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 27/99 (27%), Gaps = 21/99 (21%)
Query: 82 LQSNKVSEIVSLFDVIET------VSREKTASLLSLEMIKQSRFLPVYIQV--------- 126
L N L ++ V L + V ++V
Sbjct: 136 LHGNN-KSEAELAQAVQAGVGHIVVDSMIEIDRLDAIAGRAGVVQDVLVRVTVGVEAHTH 194
Query: 127 ---NTGYEIQKSGIMPN--QTKDFVILCRQKYQLNVEGL 160
+T +E QK G+ Q + V L + GL
Sbjct: 195 EFISTAHEDQKFGLSLAGGQALEAVRRVFATDNLRLVGL 233
>gi|154502763|ref|ZP_02039823.1| hypothetical protein RUMGNA_00577 [Ruminococcus gnavus ATCC 29149]
gi|153796646|gb|EDN79066.1| hypothetical protein RUMGNA_00577 [Ruminococcus gnavus ATCC 29149]
Length = 383
Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKYQLNV 157
TV A +S K + +I+++TG E + G ++ D + + + +
Sbjct: 105 TVYTLDMAHEISNLARKLGKTAYFHIKIDTGME--RLGFPATEESADLIGQIEKLPNVCL 162
Query: 158 EGLMCIPPAMGNPKPHF 174
EG+ F
Sbjct: 163 EGMFTHFAKADELDKTF 179
>gi|70725863|ref|YP_252777.1| hypothetical protein SH0862 [Staphylococcus haemolyticus JCSC1435]
gi|68446587|dbj|BAE04171.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 355
Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats.
Identities = 24/191 (12%), Positives = 68/191 (35%), Gaps = 30/191 (15%)
Query: 42 IRVALSCGQVIFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV----- 96
I + G FAE++L+ + + ++ N+ ++++ +
Sbjct: 43 IETLIQSGFTHFAESRLENINEDFKGQCNYLLLR-----PTSKNRYTQLIKSVKMSMQTE 97
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLN 156
IE++ ++ + ++ + + + ++ ++ G++ +++ + +
Sbjct: 98 IESI------REINDIAKQLNQKHQIMLMI--DWKDRREGVITYDVLNYIEEIIKMTHIQ 149
Query: 157 VEGL----MCI---PPAMGNPKP--HFYLLSEIARECKLTKLSMGMTRDFELAI--ASGA 205
+ G+ MC P + F E +L +S G + + G
Sbjct: 150 LIGIAFNFMCFKSSAPTEEDILKINQFVDAIEYNLGFRLKVVSGGNSSMIPQLMYNDLGR 209
Query: 206 -TSVRIGSGIF 215
+RIG +F
Sbjct: 210 INELRIGEALF 220
>gi|254000301|ref|YP_003052364.1| diaminopimelate decarboxylase [Methylovorus sp. SIP3-4]
gi|253986980|gb|ACT51837.1| diaminopimelate decarboxylase [Methylovorus sp. SIP3-4]
Length = 415
Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V L+ + PV ++VN TG + K G+ Q+
Sbjct: 124 VESAAELERLNEVAGSMGKIAPVSLRVNPNVDAKTHPYISTGLKNNKFGVAYEQSLALYQ 183
Query: 148 LCRQKYQLNVEGLMC 162
++V G+ C
Sbjct: 184 QAAAMPNIDVHGVDC 198
>gi|260556500|ref|ZP_05828718.1| diaminopimelate decarboxylase [Acinetobacter baumannii ATCC 19606]
gi|260409759|gb|EEX03059.1| diaminopimelate decarboxylase [Acinetobacter baumannii ATCC 19606]
Length = 416
Score = 35.8 bits (82), Expect = 4.2, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 13/86 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + + + P+ ++VN + K GI + +
Sbjct: 123 VESYAELDRIQKVAARLGKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDAVYETYQ 182
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKP 172
L + G+ C I + KP
Sbjct: 183 YAASLPNLEIVGIDCHIGSQLTETKP 208
>gi|169632675|ref|YP_001706411.1| diaminopimelate decarboxylase [Acinetobacter baumannii SDF]
gi|169795020|ref|YP_001712813.1| diaminopimelate decarboxylase [Acinetobacter baumannii AYE]
gi|184159195|ref|YP_001847534.1| diaminopimelate decarboxylase [Acinetobacter baumannii ACICU]
gi|213158317|ref|YP_002320368.1| diaminopimelate decarboxylase [Acinetobacter baumannii AB0057]
gi|215482568|ref|YP_002324760.1| diaminopimelate decarboxylase [Acinetobacter baumannii AB307-0294]
gi|301345397|ref|ZP_07226138.1| diaminopimelate decarboxylase [Acinetobacter baumannii AB056]
gi|301511589|ref|ZP_07236826.1| diaminopimelate decarboxylase [Acinetobacter baumannii AB058]
gi|301594791|ref|ZP_07239799.1| diaminopimelate decarboxylase [Acinetobacter baumannii AB059]
gi|332854282|ref|ZP_08435282.1| diaminopimelate decarboxylase [Acinetobacter baumannii 6013150]
gi|332865658|ref|ZP_08436484.1| diaminopimelate decarboxylase [Acinetobacter baumannii 6013113]
gi|332876024|ref|ZP_08443810.1| diaminopimelate decarboxylase [Acinetobacter baumannii 6014059]
gi|169147947|emb|CAM85810.1| diaminopimelate decarboxylase [Acinetobacter baumannii AYE]
gi|169151467|emb|CAP00216.1| diaminopimelate decarboxylase [Acinetobacter baumannii]
gi|183210789|gb|ACC58187.1| Diaminopimelate decarboxylase [Acinetobacter baumannii ACICU]
gi|193078108|gb|ABO13049.2| diaminopimelate decarboxylase [Acinetobacter baumannii ATCC 17978]
gi|213057477|gb|ACJ42379.1| diaminopimelate decarboxylase [Acinetobacter baumannii AB0057]
gi|213986285|gb|ACJ56584.1| diaminopimelate decarboxylase [Acinetobacter baumannii AB307-0294]
gi|322509109|gb|ADX04563.1| lysA [Acinetobacter baumannii 1656-2]
gi|332728098|gb|EGJ59487.1| diaminopimelate decarboxylase [Acinetobacter baumannii 6013150]
gi|332735179|gb|EGJ66259.1| diaminopimelate decarboxylase [Acinetobacter baumannii 6013113]
gi|332735890|gb|EGJ66931.1| diaminopimelate decarboxylase [Acinetobacter baumannii 6014059]
Length = 416
Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 13/86 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + + + P+ ++VN + K GI + +
Sbjct: 123 VESYAELDRIQKVAARLGKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDAVYETYQ 182
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKP 172
L + G+ C I + KP
Sbjct: 183 YAASLPNLEIVGIDCHIGSQLTETKP 208
>gi|149178497|ref|ZP_01857086.1| alanine racemase-like protein [Planctomyces maris DSM 8797]
gi|148842710|gb|EDL57084.1| alanine racemase-like protein [Planctomyces maris DSM 8797]
Length = 366
Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 49/154 (31%), Gaps = 19/154 (12%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
+G + +V + I L+ + +VN G + + G
Sbjct: 93 VGKTKWERVVSLCRHARPIIACDHYAQIEPLAKMCADAGVVCRMMPEVNIG--LNRVGSR 150
Query: 139 PN-QTKDFVILCRQKYQLNVEGLMC-------IPPAMGNPKPHFYLLSEI--------AR 182
P T D + + + + G+M I + + + A+
Sbjct: 151 PGQDTLDLAMAIDKLEGVELAGIMGYEGHLLQIQDQAEKEEKIIEAMRTLVGCKTTIEAK 210
Query: 183 ECKLTKLSMGMTRDFEL-AIASGATSVRIGSGIF 215
+S G T +++ + G T ++ G GIF
Sbjct: 211 GIPCEIVSAGGTGSYQITSNCEGITELQAGGGIF 244
>gi|313202258|ref|YP_004040916.1| diaminopimelate decarboxylase [Methylovorus sp. MP688]
gi|312441574|gb|ADQ85680.1| diaminopimelate decarboxylase [Methylovorus sp. MP688]
Length = 415
Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V L+ + PV ++VN TG + K G+ Q+
Sbjct: 124 VESAAELERLNEVAGSMGKIAPVSLRVNPNVDAKTHPYISTGLKNNKFGVAYEQSLALYQ 183
Query: 148 LCRQKYQLNVEGLMC 162
++V G+ C
Sbjct: 184 QAAAMPNIDVHGVDC 198
>gi|225378153|ref|ZP_03755374.1| hypothetical protein ROSEINA2194_03813 [Roseburia inulinivorans DSM
16841]
gi|225209959|gb|EEG92313.1| hypothetical protein ROSEINA2194_03813 [Roseburia inulinivorans DSM
16841]
Length = 390
Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 23/134 (17%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKYQLNV 157
+V + A LS K + ++ V+TG + G + D + + + V
Sbjct: 104 SVFTLEMAKELSAAAEKVGKDCRMHFAVDTGM--SRIGYQVTEEAADEMAQIAKLPHMIV 161
Query: 158 EGLMCIPPAMGNPKPHF--YLLSEIARECKLTKLSMGMTRDFELAIASGAT--------- 206
EG+ F + + + + + G++ + + +
Sbjct: 162 EGIFTHFAKADEYDKTFTKEQIQKFRKMIAMME-DRGVS----IPVKHCSNSAGIAEIRE 216
Query: 207 ----SVRIGSGIFG 216
VR G ++G
Sbjct: 217 ANMDMVRAGITLYG 230
>gi|86160486|ref|YP_467271.1| diaminopimelate decarboxylase [Anaeromyxobacter dehalogenans 2CP-C]
gi|85776997|gb|ABC83834.1| diaminopimelate decarboxylase [Anaeromyxobacter dehalogenans 2CP-C]
Length = 427
Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 35/104 (33%), Gaps = 20/104 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V + +S+ + P+ ++VN + K G+ ++ +
Sbjct: 124 VESAPELARVSIVARRMGVRAPIALRVNPDVDPKTHPYISTGLSENKFGVSVDEARRLYA 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE 183
L Q L + G+ C + P + L+ ++ ++
Sbjct: 184 LAAQDPALELRGVACHIGSQITTVRPFLDAIARVLALVKDLGKQ 227
>gi|300932943|ref|ZP_07148199.1| hypothetical protein CresD4_02686 [Corynebacterium resistens DSM
45100]
Length = 559
Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 46/150 (30%), Gaps = 33/150 (22%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
+ ++E V + + S + + + +TG + +SGI P+Q V L
Sbjct: 112 SLAHAEALVELVDTLE-------QSDSNSTPIAISLMADTG--LSRSGITPDQWATVVEL 162
Query: 149 CRQKY-QLNVEGLMC---------IPPAMGNPKPHFYLLSEIARECKLT--------KLS 190
+ +V G+M F EI RE + +
Sbjct: 163 IAKYSASFDVRGVMSHLASADDSARAAFTDVQNRRFQRAIEICREHGIDPRTNHIANTPA 222
Query: 191 MGMTRDFELAIASGATSVRIGSGIFGERPC 220
D VR G GI+G P
Sbjct: 223 ALTRPDLHH------QMVRPGVGIYGIDPV 246
>gi|91785428|ref|YP_560634.1| diaminopimelate decarboxylase [Burkholderia xenovorans LB400]
gi|91689382|gb|ABE32582.1| diaminopimelate decarboxylase [Burkholderia xenovorans LB400]
Length = 420
Score = 35.8 bits (82), Expect = 4.3, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L+ + + PV ++VN + K G+ +
Sbjct: 126 VESIPELDRLNAVAAEMGKKAPVSLRVNPDVDAKTHPYISTGLKSNKFGVAFEDARATYQ 185
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
L V G+ C P + L+ +I ++ K+ + +G
Sbjct: 186 AAAGMANLEVVGIDCHIGSQITEAAPYLDAVDKVLELVEQIEQDGLKIRHIDVG 239
>gi|332883591|gb|EGK03872.1| diaminopimelate decarboxylase [Dysgonomonas mossii DSM 22836]
Length = 385
Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 27/182 (14%), Positives = 64/182 (35%), Gaps = 46/182 (25%)
Query: 3 LGNKLQVFKQK------IENSAILAKRPKDSVSLVAVSKMVDSK-----KIRVALSCGQV 51
L L++ K++ I++ AI A + + L+A S+ + +++ A++ G
Sbjct: 26 LKRTLKIVKEETKKYGFIQHYAIKANANRRILELIA-SEGFGADCVSGNEVKAAITAG-- 82
Query: 52 IFAENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSLFDVIETVSREKTASLLS 110
++ F G +++K ++ + L V +L+
Sbjct: 83 -------------------FPASKIVFAGVGKTDKEINLALDLNIFCFNVESMPELVVLN 123
Query: 111 LEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
K+ + V +++N TG K G + + + + L +
Sbjct: 124 ELAAKKGKTAQVALRINPNVDAHTHEYITTGLNENKFGFSMAHLDNAIEVLKSLKNLKLI 183
Query: 159 GL 160
G+
Sbjct: 184 GI 185
>gi|239500988|ref|ZP_04660298.1| diaminopimelate decarboxylase [Acinetobacter baumannii AB900]
Length = 416
Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 13/86 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + + + P+ ++VN + K GI + +
Sbjct: 123 VESYAELDRIQKVAARLGKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDAVYETYQ 182
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKP 172
L + G+ C I + KP
Sbjct: 183 YAASLPNLEIVGIDCHIGSQLTETKP 208
>gi|326796187|ref|YP_004314007.1| diaminopimelate decarboxylase [Marinomonas mediterranea MMB-1]
gi|326546951|gb|ADZ92171.1| diaminopimelate decarboxylase [Marinomonas mediterranea MMB-1]
Length = 417
Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 38/120 (31%), Gaps = 20/120 (16%)
Query: 83 QSNKVSEIVSLFDVIET--VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE--------- 131
Q +++ + L I V E L+ + PV ++VN +
Sbjct: 107 QEHEMRRALEL--GIHCFNVESEPELYRLNKVAGELGVKAPVSMRVNPDVDAKTHPYIST 164
Query: 132 ---IQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPH---FYLLSEIAREC 184
K GI + + LNV G+ C I + KP F L + E
Sbjct: 165 GLKENKFGIDIKDAPRIYQVANEMAHLNVMGVDCHIGSQLTELKPFLDTFDRLITLIDEL 224
>gi|323519139|gb|ADX93520.1| diaminopimelate decarboxylase [Acinetobacter baumannii TCDC-AB0715]
Length = 407
Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 13/86 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + + + P+ ++VN + K GI + +
Sbjct: 114 VESYAELDRIQKVAARLGKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDAVYETYQ 173
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKP 172
L + G+ C I + KP
Sbjct: 174 YAASLPNLEIVGIDCHIGSQLTETKP 199
>gi|307718295|ref|YP_003873827.1| hypothetical protein STHERM_c05940 [Spirochaeta thermophila DSM
6192]
gi|306532020|gb|ADN01554.1| hypothetical protein STHERM_c05940 [Spirochaeta thermophila DSM
6192]
Length = 391
Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 12/131 (9%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
V + ++ + R + V+++V+TG ++G P + V L +
Sbjct: 100 AVGDREYVREVARVARAKGRRVRVHVEVDTGM--GRTGCAPEEAVGVVEEVEGAGVLELA 157
Query: 159 GLMCIPPAMGNPKPHFYLLS-EIARECKLTKLSMGMTRDFELAIASGA---------TSV 208
G+ P+ F E + + G++ A SG V
Sbjct: 158 GMWTHFPSSDEADDGFTEAQVERFLQVVGRVRARGISPGLLHAANSGGIIGHPPSWLDMV 217
Query: 209 RIGSGIFGERP 219
R G ++G P
Sbjct: 218 RPGISLYGYYP 228
>gi|218281653|ref|ZP_03488054.1| hypothetical protein EUBIFOR_00621 [Eubacterium biforme DSM 3989]
gi|218217260|gb|EEC90798.1| hypothetical protein EUBIFOR_00621 [Eubacterium biforme DSM 3989]
Length = 383
Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 54/173 (31%), Gaps = 29/173 (16%)
Query: 38 DSKKIRVALSCGQVIFAENKLQEAK--------KKWIPLRKEWDVQLRFIGSLQSNKVSE 89
D + CG F + + EA + L + ++ Q
Sbjct: 46 DVACAKALQKCGVDYFGVSSIDEALNLRNAGIQDNILILGYTPSMHFHYL-HEQ------ 98
Query: 90 IVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILC 149
++++++ + A L+ + + + +V+TG ++GI+ + +
Sbjct: 99 -----NIVQSLVSIEYARELNAYAKENDVKIRCHCKVDTGM--CRTGIVYQEQDKHIEDI 151
Query: 150 RQ---KYQLNVEGLMCIPPAMGNPKPHFYLLS----EIARECKLTKLSMGMTR 195
+ L VEG+ P + ++ E S G+
Sbjct: 152 YEEYRLENLCVEGIFSHFPVSDCLDEDCTEFTKKQIQLFDEVIDLLKSQGIDP 204
>gi|294633773|ref|ZP_06712331.1| alanine racemase [Streptomyces sp. e14]
gi|292830415|gb|EFF88766.1| alanine racemase [Streptomyces sp. e14]
Length = 312
Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 22/84 (26%), Gaps = 14/84 (16%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTG----YEIQKSGI------MPNQTKDFVILCR 150
++ + L V + ++ G P Q +D
Sbjct: 117 DCPAHLERIAAAATRGGHPLKVCLDLDASLKSLGGKLHFGAHRSPLRSPEQARDLARAVV 176
Query: 151 QKYQLNVEGLMC----IPPAMGNP 170
++ L + GLM I N
Sbjct: 177 ERSGLRLVGLMAYEAQIAGVGDNA 200
>gi|119469651|ref|ZP_01612520.1| putative diaminopimelate decarboxylase [Alteromonadales bacterium
TW-7]
gi|119446898|gb|EAW28169.1| putative diaminopimelate decarboxylase [Alteromonadales bacterium
TW-7]
Length = 417
Score = 35.8 bits (82), Expect = 4.4, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 13/94 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V +S + + P+ I+VN + K GI
Sbjct: 124 VESASELERISEVACELNLVAPISIRVNPDIDAKTHPYISTGLKENKFGIDIQTAVSVYQ 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEI 180
LNV G+ C I + KP L ++
Sbjct: 184 QAAALPGLNVIGVDCHIGSQLTEVKPFLEALDKL 217
>gi|254776802|ref|ZP_05218318.1| alanine racemase [Mycobacterium avium subsp. avium ATCC 25291]
Length = 391
Score = 35.8 bits (82), Expect = 4.5, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 19/136 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR---QKYQLN 156
+S ++ L + R V ++V+TG + ++G+ P Q + R + +
Sbjct: 113 LSSQRQLDELLAAVRDTGRTATVTVKVDTG--LNRNGVPPAQYPSMLTALRRAVAEEAIV 170
Query: 157 VEGLMC-IPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT--------- 206
GLM + A P + ++ + + G+ FE+A S ++
Sbjct: 171 PRGLMSHMVYADQPANPVNDVQAQRFTDMLAQARAQGV--RFEVAHLSNSSATMSRPDLA 228
Query: 207 --SVRIGSGIFGERPC 220
VR G ++G P
Sbjct: 229 FDMVRPGIAVYGLSPV 244
>gi|308187988|ref|YP_003932119.1| Diaminopimelate decarboxylase [Pantoea vagans C9-1]
gi|308058498|gb|ADO10670.1| Diaminopimelate decarboxylase [Pantoea vagans C9-1]
Length = 418
Score = 35.8 bits (82), Expect = 4.5, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECK 185
NTG E K GI + + + +Q + L + G+ M I + + L ++
Sbjct: 154 NTGGENSKHGIWHDDLDEALAAIKQ-HGLKLVGIHMHIGSGVD-----YSHLQQVCD--A 205
Query: 186 LTKLSMGMTRDFELAIASG 204
+ +L M +D AI++G
Sbjct: 206 MVELVMASGQDL-TAISAG 223
>gi|302853272|ref|XP_002958152.1| DAP decarboxylase [Volvox carteri f. nagariensis]
gi|300256513|gb|EFJ40777.1| DAP decarboxylase [Volvox carteri f. nagariensis]
Length = 462
Score = 35.8 bits (82), Expect = 4.6, Method: Composition-based stats.
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 12/73 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
+ E ++ K + + V +++N + K GI + F+
Sbjct: 178 IDSEFDLQNIAAAARKTGKKVKVLLRINPDVDPQVHPYVSTGLAGSKFGIRNSHIGWFLE 237
Query: 148 LCRQKYQLNVEGL 160
R + L + G+
Sbjct: 238 AIRAEPLLELVGV 250
>gi|145300547|ref|YP_001143388.1| diaminopimelate decarboxylase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142853319|gb|ABO91640.1| diaminopimelate decarboxylase [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 416
Score = 35.8 bits (82), Expect = 4.6, Method: Composition-based stats.
Identities = 14/96 (14%), Positives = 27/96 (28%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
+ E L+ + V ++VN + K GI Q
Sbjct: 125 LESEAELERLNRVAGSMGKKARVSVRVNPDIDAGTHPYISTGLKQNKFGIPIEQAPAIYR 184
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
+ ++G+ C I + P ++ R
Sbjct: 185 KAAAMANIEIKGVDCHIGSQLTELNPFMEAADKLLR 220
>gi|306818841|ref|ZP_07452563.1| transcriptional regulatory protein [Mobiluncus mulieris ATCC 35239]
gi|304648527|gb|EFM45830.1| transcriptional regulatory protein [Mobiluncus mulieris ATCC 35239]
Length = 230
Score = 35.8 bits (82), Expect = 4.6, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 55 ENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSLFDVIETVSR--EKTASLLSL 111
EN QE K K L + + + IG +SNK +++ L + TV+ ++ L++
Sbjct: 149 ENGDQELKAKIEALPEHLRIIVNLIGEARSNKEIAKATGL--SLHTVTTYIKRILQKLNI 206
Query: 112 EMIK 115
+
Sbjct: 207 RRGQ 210
>gi|183982656|ref|YP_001850947.1| hypothetical protein MMAR_2646 [Mycobacterium marinum M]
gi|183175982|gb|ACC41092.1| conserved protein [Mycobacterium marinum M]
Length = 413
Score = 35.8 bits (82), Expect = 4.6, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 39/142 (27%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTG----YEIQKSG------IMPNQTKDFVILC 149
V + L+ R + + + ++ G K G P Q ++ +
Sbjct: 136 VDSVEHLDLIDRA---TDRPVRLCLDLDAGYWRAGGRVKVGPKRSPLHTPEQARELALEI 192
Query: 150 RQKYQLNVEGLMC----IPPAMGN--------------PKPHFYLLSEIARE-------- 183
++ +L + LM I + F L E
Sbjct: 193 ARRPRLRLVALMSYEGHIAGFGDQVAGKFAQNAIVRWMQRESFAELRERRARAVELVSEV 252
Query: 184 CKLTKLSMGMTRDFELAIASGA 205
+L ++ G T D +L A
Sbjct: 253 AELEIVNAGGTGDLQLVAHESA 274
>gi|304391037|ref|ZP_07372989.1| possible succinate semialdehyde dehydrogenase (NAD(P)(+))
[Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|304325920|gb|EFL93166.1| possible succinate semialdehyde dehydrogenase (NAD(P)(+))
[Mobiluncus curtisii subsp. curtisii ATCC 35241]
Length = 535
Score = 35.8 bits (82), Expect = 4.6, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 9/97 (9%)
Query: 38 DSKKIRVALSCGQVIFAENKL--QEAKKKWIPLRKEWDVQ-----LRFIGSLQSNKVSEI 90
+ A++ G + N + Q A + D + I S +
Sbjct: 156 SVNDVLQAIAAGNAVV--NFVTPQAALGAVLMHAMLVDAGMPYGLWKIIPDTTSKAGRSV 213
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
+ D++ + EK +S + ++QV+
Sbjct: 214 IPGLDMVSVLGSEKLGRRISRVCQEYKVPFKGFLQVH 250
>gi|261346253|ref|ZP_05973897.1| diaminopimelate decarboxylase [Providencia rustigianii DSM 4541]
gi|282565561|gb|EFB71096.1| diaminopimelate decarboxylase [Providencia rustigianii DSM 4541]
Length = 419
Score = 35.8 bits (82), Expect = 4.6, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECK 185
NTG E K GI + + + + RQ Y L + G+ M I + + L+ +
Sbjct: 156 NTGGENSKHGIWHHDLPEALAIIRQ-YNLKLVGIHMHIGSGVD-----YQHLANVCDAMV 209
Query: 186 LTKLSMGMTRDFELAIASG 204
+S G+ D AI++G
Sbjct: 210 ELVISAGVDID---AISAG 225
>gi|187251103|ref|YP_001875585.1| diaminopimelate decarboxylase [Elusimicrobium minutum Pei191]
gi|186971263|gb|ACC98248.1| Diaminopimelate decarboxylase [Elusimicrobium minutum Pei191]
Length = 417
Score = 35.8 bits (82), Expect = 4.6, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 13/95 (13%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVIL 148
E + ++ +K + + ++VN TG + K G+ + KD I
Sbjct: 123 ESEAEVNTINHIALKLGKKANIALRVNPDVDAKTHVKITTGKKENKFGVDWDIAKDLYIK 182
Query: 149 CRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIAR 182
+ LNV G+ M I + + P +++A
Sbjct: 183 ASKMEGLNVVGIAMHIGSQLLDLDPFRLAFTKMAD 217
>gi|315655887|ref|ZP_07908785.1| succinate-semialdehyde dehydrogenase (NAD(P)(+)) [Mobiluncus
curtisii ATCC 51333]
gi|315489951|gb|EFU79578.1| succinate-semialdehyde dehydrogenase (NAD(P)(+)) [Mobiluncus
curtisii ATCC 51333]
Length = 535
Score = 35.8 bits (82), Expect = 4.7, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 9/97 (9%)
Query: 38 DSKKIRVALSCGQVIFAENKL--QEAKKKWIPLRKEWDVQ-----LRFIGSLQSNKVSEI 90
+ A++ G + N + Q A + D + I S +
Sbjct: 156 SVNDVLQAIAAGNAVV--NFVTPQAALGAVLMHAMLVDAGMPYGLWKIIPDTTSKAGRSV 213
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
+ D++ + EK +S + ++QV+
Sbjct: 214 IPGLDMVSVLGSEKLGRRISRVCQEYKVPFKGFLQVH 250
>gi|300113121|ref|YP_003759696.1| diaminopimelate decarboxylase [Nitrosococcus watsonii C-113]
gi|299539058|gb|ADJ27375.1| diaminopimelate decarboxylase [Nitrosococcus watsonii C-113]
Length = 417
Score = 35.8 bits (82), Expect = 4.7, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 20/104 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ K + PV ++VN TG K GI +Q
Sbjct: 125 VESEAELLRLNEIAGKLGQRAPVSLRVNPDVDARTHPYIATGLRDNKFGIEIDQALAVYA 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARE 183
+++ G L + P + + L+ ++A+
Sbjct: 185 RAVTLPHIDILGVDCHIGSQLTSLSPFLAALERVLALVDQLAKR 228
>gi|288934755|ref|YP_003438814.1| alanine racemase [Klebsiella variicola At-22]
gi|288889464|gb|ADC57782.1| alanine racemase [Klebsiella variicola At-22]
Length = 356
Score = 35.8 bits (82), Expect = 4.7, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 13/132 (9%)
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
L + + + K +L+ K L +Y++VN+G + G MP + R
Sbjct: 95 RLTTSVHSNWQIK-----ALQQAKLRAPLDIYLKVNSGM--NRLGFMPERVHTVWQQLRA 147
Query: 152 KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI----ASGATS 207
+ LM NP+ + I + + + A +
Sbjct: 148 ISNVGEMTLMSHFAEAENPQGIVEPMRRIEQAAEGLDCPRSLAN--SAATLWHPEAHFDW 205
Query: 208 VRIGSGIFGERP 219
VR G ++G P
Sbjct: 206 VRPGIVLYGASP 217
>gi|206580802|ref|YP_002237825.1| alanine racemase [Klebsiella pneumoniae 342]
gi|206569860|gb|ACI11636.1| alanine racemase [Klebsiella pneumoniae 342]
Length = 356
Score = 35.8 bits (82), Expect = 4.7, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 13/132 (9%)
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
L + + + K +L+ K L +Y++VN+G + G MP + R
Sbjct: 95 RLTTSVHSNWQIK-----ALQQAKLRAPLDIYLKVNSGM--NRLGFMPERVHTVWQQLRA 147
Query: 152 KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI----ASGATS 207
+ LM NP+ + I + + + A +
Sbjct: 148 ISNVGEMTLMSHFAEAENPQGIVEPMRRIEQAAEGLDCPRSLAN--SAATLWHPEAHFDW 205
Query: 208 VRIGSGIFGERP 219
VR G ++G P
Sbjct: 206 VRPGIVLYGASP 217
>gi|126642667|ref|YP_001085651.1| diaminopimelate decarboxylase [Acinetobacter baumannii ATCC 17978]
Length = 374
Score = 35.8 bits (82), Expect = 4.7, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 13/86 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + + + P+ ++VN + K GI + +
Sbjct: 81 VESYAELDRIQKVAARLGKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDAVYETYQ 140
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKP 172
L + G+ C I + KP
Sbjct: 141 YAASLPNLEIVGIDCHIGSQLTETKP 166
>gi|315656187|ref|ZP_07909078.1| succinate-semialdehyde dehydrogenase (NAD(P)(+)) [Mobiluncus
curtisii subsp. holmesii ATCC 35242]
gi|315493189|gb|EFU82789.1| succinate-semialdehyde dehydrogenase (NAD(P)(+)) [Mobiluncus
curtisii subsp. holmesii ATCC 35242]
Length = 535
Score = 35.8 bits (82), Expect = 4.7, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 9/97 (9%)
Query: 38 DSKKIRVALSCGQVIFAENKL--QEAKKKWIPLRKEWDVQ-----LRFIGSLQSNKVSEI 90
+ A++ G + N + Q A + D + I S +
Sbjct: 156 SVNDVLQAIAAGNAVV--NFVTPQAALGAVLMHAMLVDAGMPYGLWKIIPDTTSKAGRSV 213
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
+ D++ + EK +S + ++QV+
Sbjct: 214 IPGLDMVSVLGSEKLGRRISRVCQEYKVPFKGFLQVH 250
>gi|83590990|ref|YP_430999.1| alanine racemase [Moorella thermoacetica ATCC 39073]
gi|83573904|gb|ABC20456.1| alanine racemase [Moorella thermoacetica ATCC 39073]
Length = 373
Score = 35.8 bits (82), Expect = 4.7, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 10/106 (9%)
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
+ + + + G +P + + +EG+ + K + + +
Sbjct: 124 LHLKIDTGMGRLGFLPREAVTAARAIADLPHVTLEGIFTHFAASDAADKTYTQRQLGLFQ 183
Query: 183 ECKLTKLSMGMTRDFELAIASGA---------TSVRIGSGIFGERP 219
+ G+T + A SGA VR G ++G P
Sbjct: 184 QVIAELEKQGITFPWRHAANSGAIIDLPGTHFNLVRAGIILYGHYP 229
>gi|170718155|ref|YP_001785183.1| diaminopimelate decarboxylase [Haemophilus somnus 2336]
gi|168826284|gb|ACA31655.1| diaminopimelate decarboxylase [Haemophilus somnus 2336]
Length = 417
Score = 35.8 bits (82), Expect = 4.7, Method: Composition-based stats.
Identities = 12/104 (11%), Positives = 33/104 (31%), Gaps = 20/104 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + ++ K + + ++VN + K G+ Q ++
Sbjct: 124 VESAAELTKINQVARKMGKIASISLRVNPDVDAHTHPYISTGLKENKFGVSVEQAREVYR 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE 183
Q + + G+ C + P + L+ ++ ++
Sbjct: 184 QASQLENIKIVGIDCHIGSQLTELQPFLDATDRLIVLMEQLKKD 227
>gi|298345481|ref|YP_003718168.1| succinate-semialdehyde dehydrogenase [Mobiluncus curtisii ATCC
43063]
gi|298235542|gb|ADI66674.1| succinate-semialdehyde dehydrogenase (NAD(P)(+)) [Mobiluncus
curtisii ATCC 43063]
Length = 520
Score = 35.8 bits (82), Expect = 4.7, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 9/97 (9%)
Query: 38 DSKKIRVALSCGQVIFAENKL--QEAKKKWIPLRKEWDVQ-----LRFIGSLQSNKVSEI 90
+ A++ G + N + Q A + D + I S +
Sbjct: 141 SVNDVLQAIAAGNAVV--NFVTPQAALGAVLMHAMLVDAGMPYGLWKIIPDTTSKAGRSV 198
Query: 91 VSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN 127
+ D++ + EK +S + ++QV+
Sbjct: 199 IPGLDMVSVLGSEKLGRRISRVCQEYKVPFKGFLQVH 235
>gi|327395055|dbj|BAK12477.1| diaminopimelate decarboxylase [Pantoea ananatis AJ13355]
Length = 425
Score = 35.8 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECK 185
NTG E K GI P+ Q Y L + G+ M I + + L ++
Sbjct: 163 NTGGENSKHGIWPSDLPAAQAAIEQ-YGLRLIGIHMHIGSGVD-----YAHLQQVCD--A 214
Query: 186 LTKLSMGMTRDFELAIASG 204
+ L + +D E AI++G
Sbjct: 215 MVDLVVEFGQDLE-AISAG 232
>gi|304394204|ref|ZP_07376127.1| diaminopimelate decarboxylase [Ahrensia sp. R2A130]
gi|303293644|gb|EFL88021.1| diaminopimelate decarboxylase [Ahrensia sp. R2A130]
Length = 423
Score = 35.8 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 16/102 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
+ E +LS + V ++N + K GI +
Sbjct: 124 IESEPELEMLSARAAAMGKTAHVSFRINPDVDAKTIEKISTGKKTDKFGIPHEEASRIYA 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIARECK 185
+ + V G+ M I + + P F L+++ +
Sbjct: 184 RAAELPGIKVTGIDMHIGSQITDLAPFDTAFGKLADLVGHLR 225
>gi|262041903|ref|ZP_06015086.1| alanine racemase [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|259040709|gb|EEW41797.1| alanine racemase [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
Length = 356
Score = 35.8 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 13/132 (9%)
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
L + + + K +L+ K L +Y++VN+G + G MP + R
Sbjct: 95 RLTTSVHSNWQIK-----ALQQAKLRAPLDIYLKVNSGM--NRLGFMPERVHTVWQQLRA 147
Query: 152 KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI----ASGATS 207
+ LM NP+ + I + + + A +
Sbjct: 148 ISNVGEMTLMSHFAEAENPQGIVEPMRRIEQAAEGLDCPRSLAN--SAATLWHPEAHFDW 205
Query: 208 VRIGSGIFGERP 219
VR G ++G P
Sbjct: 206 VRPGIVLYGASP 217
>gi|152970855|ref|YP_001335964.1| alanine racemase [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238895366|ref|YP_002920101.1| alanine racemase [Klebsiella pneumoniae NTUH-K2044]
gi|150955704|gb|ABR77734.1| alanine racemase [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238547683|dbj|BAH64034.1| alanine racemase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
Length = 356
Score = 35.8 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 13/132 (9%)
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
L + + + K +L+ K L +Y++VN+G + G MP + R
Sbjct: 95 RLTTSVHSNWQIK-----ALQQAKLRAPLDIYLKVNSGM--NRLGFMPERVHTVWQQLRA 147
Query: 152 KYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI----ASGATS 207
+ LM NP+ + I + + + A +
Sbjct: 148 ISNVGEMTLMSHFAEAENPQGIVEPMRRIEQAAEGLDCPRSLAN--SAATLWHPEAHFDW 205
Query: 208 VRIGSGIFGERP 219
VR G ++G P
Sbjct: 206 VRPGIVLYGASP 217
>gi|330878499|gb|EGH12648.1| diaminopimelate decarboxylase [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 415
Score = 35.8 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + + P+ ++VN + K GI +D I
Sbjct: 124 VESTDELERLQEVAAELNVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYI 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
Q L V G+ C I + +P L +
Sbjct: 184 RASQLPNLEVIGVDCHIGSQLTTLEPFIDALDRLLD 219
>gi|307545925|ref|YP_003898404.1| diaminopimelate decarboxylase [Halomonas elongata DSM 2581]
gi|307217949|emb|CBV43219.1| putative diaminopimelate decarboxylase [Halomonas elongata DSM
2581]
Length = 420
Score = 35.8 bits (82), Expect = 4.8, Method: Composition-based stats.
Identities = 16/93 (17%), Positives = 25/93 (26%), Gaps = 13/93 (13%)
Query: 80 GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVN------------ 127
G L S+ + + + V + L R PV +++N
Sbjct: 102 GKLDSDMRAAMTRGVEAFH-VESLGEVARLQTIAASLDRVQPVLVRINPSLPEDLSSRLR 160
Query: 128 TGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
GI Q D V L + G
Sbjct: 161 MAGTATPFGIDEAQLADAVRAVDDAPNLALVGF 193
>gi|227875532|ref|ZP_03993672.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243]
gi|227843868|gb|EEJ54037.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243]
Length = 234
Score = 35.8 bits (82), Expect = 4.9, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 55 ENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSLFDVIETVSR--EKTASLLSL 111
EN QE K K L + + + IG +SNK +++ L + TV+ ++ L++
Sbjct: 149 ENGDQELKAKIEALPEHLRIIVNLIGEARSNKEIAKATGL--SLHTVTTYIKRILKKLNI 206
Query: 112 EMIK 115
+
Sbjct: 207 RRGQ 210
>gi|167761920|ref|ZP_02434047.1| hypothetical protein BACSTE_00263 [Bacteroides stercoris ATCC
43183]
gi|167700152|gb|EDS16731.1| hypothetical protein BACSTE_00263 [Bacteroides stercoris ATCC
43183]
Length = 386
Score = 35.8 bits (82), Expect = 4.9, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V +++ + + V ++N TG K GI +
Sbjct: 113 VESIPELEIINELAAAKGKVANVAFRINPNVGAHTHANITTGLAENKFGISMEDMDHVID 172
Query: 148 LCRQKYQLNVEGL--------MCIPPAMGNPKPHFYLLSEI-ARECKLTKLSMG 192
+ ++ + GL + + + LL ++ AR+ ++ +++G
Sbjct: 173 VAQEMKNVKFIGLHFHIGSQILDMGDFVALCNRVNELLDKLEARQIRIEHVNVG 226
>gi|152993699|ref|YP_001359420.1| alanine racemase [Sulfurovum sp. NBC37-1]
gi|226711065|sp|A6QC54|ALR_SULNB RecName: Full=Alanine racemase
gi|151425560|dbj|BAF73063.1| alanine racemase [Sulfurovum sp. NBC37-1]
Length = 336
Score = 35.8 bits (82), Expect = 4.9, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 85 NKVSEIVSLFDVI--ETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT 142
+ E+ V+ V + + L+ ++ L +++ + ++GI P +
Sbjct: 65 KNIKELFRTVLVLGDHAVKDDICSFALNCLNDIENAELGARVELKVDTGMHRNGIAPEEL 124
Query: 143 KDFVILCRQKYQLNVEGLMC-------IPPAMGNPKPHFYLLSEIARECKL 186
+ + + QK L + G+M + + + F + E +E
Sbjct: 125 ERALQMI-QKKDLELVGVMTHFRSADEMGSELFWQQKQFASVKERVKEAGF 174
>gi|295836505|ref|ZP_06823438.1| diaminopimelate decarboxylase [Streptomyces sp. SPB74]
gi|295826063|gb|EFG64650.1| diaminopimelate decarboxylase [Streptomyces sp. SPB74]
Length = 465
Score = 35.8 bits (82), Expect = 4.9, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 22/123 (17%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQV------------NTGYEIQKSGIMPN--QTKDF 145
V + + ++ R V I+V T +E QK G+ Q +
Sbjct: 162 VDSFQELARVAHTAQAHGRVQRVQIRVTVGVEAHTHEFIATAHEDQKFGLALAGGQAAEA 221
Query: 146 VILCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDF 197
V + + G + + + + LL+EI E + + +
Sbjct: 222 VRRALTLDGIELVGIHSHIGSQIFDMAGFEVSARRVVGLLAEIRDEHGVELPEIDLGGGL 281
Query: 198 ELA 200
+A
Sbjct: 282 GIA 284
>gi|148272332|ref|YP_001221893.1| hypothetical protein CMM_1152 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830262|emb|CAN01196.1| lysA [Clavibacter michiganensis subsp. michiganensis NCPPB 382]
Length = 499
Score = 35.8 bits (82), Expect = 4.9, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 12/73 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V ++ R PV ++VN T E QK GI V
Sbjct: 156 VDSAIEVERVAAAAAAHGRVQPVRLRVNSGVHAHTHEYLATAREDQKFGITLADAPGLVA 215
Query: 148 LCRQKYQLNVEGL 160
R L+ GL
Sbjct: 216 RIRSHATLSFTGL 228
>gi|213970728|ref|ZP_03398853.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tomato T1]
gi|301382616|ref|ZP_07231034.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tomato
Max13]
gi|302061756|ref|ZP_07253297.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tomato K40]
gi|302133635|ref|ZP_07259625.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213924562|gb|EEB58132.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tomato T1]
gi|331017916|gb|EGH97972.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. lachrymans
str. M302278PT]
Length = 415
Score = 35.8 bits (82), Expect = 5.0, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + + P+ ++VN + K GI +D I
Sbjct: 124 VESTDELERLQEVAAELNVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYI 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
Q L V G+ C I + +P L +
Sbjct: 184 RASQLPNLEVIGVDCHIGSQLTTLEPFIDALDRLLD 219
>gi|28867457|ref|NP_790076.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tomato str.
DC3000]
gi|28850691|gb|AAO53771.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. tomato str.
DC3000]
Length = 415
Score = 35.8 bits (82), Expect = 5.0, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + + P+ ++VN + K GI +D I
Sbjct: 124 VESTDELERLQEVAAELNVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYI 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
Q L V G+ C I + +P L +
Sbjct: 184 RASQLPNLEVIGVDCHIGSQLTTLEPFIDALDRLLD 219
>gi|315127973|ref|YP_004069976.1| arginine decarboxylase [Pseudoalteromonas sp. SM9913]
gi|315016487|gb|ADT69825.1| arginine decarboxylase [Pseudoalteromonas sp. SM9913]
Length = 626
Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 8/116 (6%)
Query: 74 VQLRFIGSLQSNKVSEIVSLFD----VIETVSREKTASLLSLEMIKQSRFLPVYIQVNTG 129
++L IG + V +V ++E + + + + + + Q NTG
Sbjct: 153 LRLACIGQAMGHSVKIVVEKLSELTTLLEEIDNLGIEPAIGIRI-RLNSVGKGKWQ-NTG 210
Query: 130 YEIQKSGIMPNQTKDFVILCRQKYQLNVEGL--MCIPPAMGNPKPHFYLLSEIARE 183
E K G+ Q V + +Q +L++ + I + N + L E AR
Sbjct: 211 GEKGKFGLTAGQVLSAVEVLKQHSKLHLMQMVHFHIGSQIANIRDIHRALRECARH 266
>gi|160933007|ref|ZP_02080396.1| hypothetical protein CLOLEP_01849 [Clostridium leptum DSM 753]
gi|156868081|gb|EDO61453.1| hypothetical protein CLOLEP_01849 [Clostridium leptum DSM 753]
Length = 283
Score = 35.4 bits (81), Expect = 5.1, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 6/87 (6%)
Query: 134 KSGIMPNQTKDFVILCRQKYQLNV-EGLMCIPPAM-GNPKPHFYLLSEIARECKLT-KLS 190
K G + +D L + ++ G+ G P+ +F L+EI + L
Sbjct: 148 KGGDFLAEVEDAAALVKATQVDSLAVGIGSAHGFYKGKPELNFKRLAEINKAVDTPLVLH 207
Query: 191 MGM---TRDFELAIASGATSVRIGSGI 214
G D + AI G V +G+ I
Sbjct: 208 GGTGIPQEDIQRAIKEGINKVNVGTII 234
>gi|327194730|gb|EGE61574.1| metal-activated pyridoxal enzyme [Rhizobium etli CNPAF512]
Length = 387
Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQKYQLNVE 158
V + L+ K + +++++ G + G+ D L
Sbjct: 130 VDDPANVAELASAARKHGTTIECFVEIDVG--AGRCGVSSSAAVVDLAKAIAGAQGLRFA 187
Query: 159 GLMCIPPAMGNPKPH 173
G+ AM + +
Sbjct: 188 GVQAYQGAMQHIDKY 202
>gi|148554345|ref|YP_001261927.1| amino acid aldolase or racemase-like protein [Sphingomonas
wittichii RW1]
gi|148499535|gb|ABQ67789.1| amino acid aldolase or racemase-like protein [Sphingomonas
wittichii RW1]
Length = 425
Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 36/121 (29%), Gaps = 13/121 (10%)
Query: 92 SLFDVIETVSREKT--ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVIL 148
F+ V + + R L V I++ G + G+ + +
Sbjct: 140 PAFEFFSLVDSGRGARLLAEAALARGLERPLDVLIEI--GMPGTRGGVRTEEEAIALMSA 197
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL-----TKLSMGMTRDFELAIAS 203
QL + G + G + R+ L +S G+ D L ++
Sbjct: 198 IDALPQLRLRG---VEAFEGVVSLDRAGAERVRRQLDLVRRTAAHISTGLPGDMRLIFSA 254
Query: 204 G 204
G
Sbjct: 255 G 255
>gi|118465728|ref|YP_883507.1| alanine racemase [Mycobacterium avium 104]
gi|20141183|sp|Q9L888|ALR_MYCAV RecName: Full=Alanine racemase
gi|166969418|sp|A0QKR9|ALR_MYCA1 RecName: Full=Alanine racemase
gi|118167015|gb|ABK67912.1| alanine racemase [Mycobacterium avium 104]
Length = 388
Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 19/136 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR---QKYQLN 156
+S ++ L + R V ++V+TG + ++G+ P Q + R + +
Sbjct: 110 LSSQRQLDELLTAVRDTGRTATVTVKVDTG--LNRNGVPPAQYPSMLTALRRAVAEQAIV 167
Query: 157 VEGLMC-IPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT--------- 206
GLM + A P + ++ + G+ FE+A S ++
Sbjct: 168 PRGLMSHMVYADQPANPVNDVQAQRFTDMLAQAREQGV--RFEVAHLSNSSATMSRPDLA 225
Query: 207 --SVRIGSGIFGERPC 220
VR G ++G P
Sbjct: 226 FDMVRPGIAVYGLSPV 241
>gi|299537887|ref|ZP_07051176.1| hypothetical protein BFZC1_17794 [Lysinibacillus fusiformis ZC1]
gi|298726866|gb|EFI67452.1| hypothetical protein BFZC1_17794 [Lysinibacillus fusiformis ZC1]
Length = 391
Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE-------IQKSGIMPNQ-TKDFVILCRQ 151
V R + LL+ + + V I +N + ++S + + F+ +
Sbjct: 114 VDRPEHIQLLAKLAQEIGVRVQVCIDLNVSNDFKVLYFGTKRSSLSSLETLTPFLQTIQN 173
Query: 152 KYQLNVEGLMCI 163
+ V G M
Sbjct: 174 TPVIEVVGAMGY 185
>gi|238024453|ref|YP_002908685.1| hypothetical protein bglu_2g10490 [Burkholderia glumae BGR1]
gi|237879118|gb|ACR31450.1| Hypothetical protein bglu_2g10490 [Burkholderia glumae BGR1]
Length = 376
Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 14/114 (12%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQK--YQLNVE 158
A + + V+I+V+ +SG+ P + + + +++
Sbjct: 108 DSVACAQAIVAFGRQHGESFEVWIEVDVDG--HRSGLDPED-EALLAVAATLVGGGMHLG 164
Query: 159 GLMCIPPAMGNPKPHFYLLS----EIARECKLTK--LSMGMTRDFELAIASGAT 206
G+M + H L+ E +R + + S G++ A++ G+T
Sbjct: 165 GVMAHAGSSYEHDTHDALVRLAEQERSRSVRAAERIRSAGLSC---QAVSIGST 215
>gi|330976601|gb|EGH76645.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. aptata str.
DSM 50252]
Length = 415
Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + + P+ ++VN + K GI +D I
Sbjct: 124 VESTDELERLQEVAAELNVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYI 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
Q L V G+ C I + +P L +
Sbjct: 184 RASQLPNLEVIGVDCHIGSQLTTLEPFIDALDRLLD 219
>gi|302189433|ref|ZP_07266106.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. syringae
642]
Length = 415
Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + + P+ ++VN + K GI +D I
Sbjct: 124 VESTDELERLQEVAAELNVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYI 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
Q L V G+ C I + +P L +
Sbjct: 184 RASQLPNLEVIGVDCHIGSQLTTLEPFIDALDRLLD 219
>gi|261210961|ref|ZP_05925251.1| alanine racemase [Vibrio sp. RC341]
gi|260839936|gb|EEX66536.1| alanine racemase [Vibrio sp. RC341]
Length = 335
Score = 35.4 bits (81), Expect = 5.2, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 13/127 (10%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQT-KDFVILCRQKYQLNVEGLMCIP 164
A L+ K + + V++ +N G + M + K + + LN+ G+M
Sbjct: 74 AMELADLAKKTGKTIKVHMALNDGGMGRNGIDMTTEAGKKEALSIATQPSLNIVGMMTHF 133
Query: 165 PAMGNPKPHFYLLSEIARECK-LTKLSMGMTRDFELAIASGAT----------SVRIGSG 213
P N L++ L + S D L +A+ T VR G
Sbjct: 134 PNY-NADEVRTKLAKFKESSAWLIEQSNLKREDITLHVANSYTALNVPEAQLDMVRPGGV 192
Query: 214 IFGERPC 220
++G+ P
Sbjct: 193 LYGDLPT 199
>gi|330900736|gb|EGH32155.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 415
Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + + P+ ++VN + K GI +D I
Sbjct: 124 VESTDELERLQEVAAELNVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYI 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
Q L V G+ C I + +P L +
Sbjct: 184 RASQLPNLEVIGVDCHIGSQLTTLEPFIDALDRLLD 219
>gi|298675499|ref|YP_003727249.1| diaminopimelate decarboxylase [Methanohalobium evestigatum Z-7303]
gi|298288487|gb|ADI74453.1| diaminopimelate decarboxylase [Methanohalobium evestigatum Z-7303]
Length = 426
Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 20/104 (19%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFV 146
+V + LS + + + + +VN TG + K GI ++
Sbjct: 124 SVDSFDELNTLSSIAKNEGKVVDIAFRVNPDVSPKTHPKISTGLKTSKFGIPHDEVVSAY 183
Query: 147 ILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIAR 182
K +N G+ C + P + L+ +I+R
Sbjct: 184 KQALDKPGVNPVGIHCHIGSQILEVEPFVETVNKMMDLVEQISR 227
>gi|291618675|ref|YP_003521417.1| LysA [Pantoea ananatis LMG 20103]
gi|291153705|gb|ADD78289.1| LysA [Pantoea ananatis LMG 20103]
Length = 425
Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECK 185
NTG E K GI P+ Q Y L + G+ M I + + L ++
Sbjct: 163 NTGGENSKHGIWPSDLPAAQAAIEQ-YGLRLIGIHMHIGSGVD-----YAHLQQVCD--A 214
Query: 186 LTKLSMGMTRDFELAIASG 204
+ L + +D E AI++G
Sbjct: 215 MVDLVVEFGQDLE-AISAG 232
>gi|110680093|ref|YP_683100.1| threonine aldolase [Roseobacter denitrificans OCh 114]
gi|109456209|gb|ABG32414.1| threonine aldolase [Roseobacter denitrificans OCh 114]
Length = 387
Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 83 QSNKVSEIVSL----FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
Q K+ + L I V + LS ++ + ++++ G + G+
Sbjct: 109 QPEKIDRLARLPKLGARAICCVDDIDNVADLSQAALRHGTQIECLVEIDVG--AGRCGVQ 166
Query: 139 PNQ-TKDFVILCRQKYQLNVEGL 160
Q D + L G+
Sbjct: 167 YGQPVVDLALAIDAAEGLKFAGI 189
>gi|40063239|gb|AAR38066.1| alanine racemase [uncultured marine bacterium 577]
Length = 357
Score = 35.4 bits (81), Expect = 5.3, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 27/122 (22%)
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
KQ R L V++++NTG + G P Q + + + + LM
Sbjct: 111 AYKQPRGLDVFLKLNTGM--NRLGFTPEQFLRALEILKSNPVIGQITLMT---------- 158
Query: 173 HFYLLSEIARECKLTKL-----SMGMTRDFE------LAI----ASGATSVRIGSGIFGE 217
HF + + S+ DF AI + A VR G ++G
Sbjct: 159 HFACADAYKDRSGVIEQLKCFNSITSDLDFPCSLANSAAILSYPETHADWVRPGIMLYGS 218
Query: 218 RP 219
P
Sbjct: 219 SP 220
>gi|271963175|ref|YP_003337371.1| diaminopimelate decarboxylase [Streptosporangium roseum DSM 43021]
gi|270506350|gb|ACZ84628.1| diaminopimelate decarboxylase [Streptosporangium roseum DSM 43021]
Length = 460
Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 38/141 (26%), Gaps = 31/141 (21%)
Query: 82 LQSNKVSEIVSLFDVIET------VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE---- 131
L N + L +E + + L K R V I+V G E
Sbjct: 135 LHGNN-KSLAELEKAVEAGVGHIVADSFEEIARLGFLADKHGRRPQVMIRVTVGVEAHTH 193
Query: 132 --------IQKSGIMPN--QTKDFVILCRQKYQLNVEGL--------MCIPPAMGNPKPH 173
QK G + + QL + GL +
Sbjct: 194 EFIATAHDDQKFGFSLSSGAAAEAARRILALPQLELVGLHSHIGSQITDTAGFEVAARRL 253
Query: 174 FYLLSEIARECK--LTKLSMG 192
LL +I E L +L +G
Sbjct: 254 ATLLVQIKEEHGVVLPELDLG 274
>gi|212633301|ref|YP_002309826.1| diaminopimelate decarboxylase [Shewanella piezotolerans WP3]
gi|212554785|gb|ACJ27239.1| Diaminopimelate decarboxylase [Shewanella piezotolerans WP3]
Length = 414
Score = 35.4 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 14/94 (14%), Positives = 34/94 (36%), Gaps = 13/94 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V LS+ + ++ PV +++N + K GI + + +
Sbjct: 124 VESAAELEQLSVVAQRMNKVAPVSLRINPDVDAGTHPYISTGLKENKFGIAMEEAEAIFL 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEI 180
++ + ++G+ C I + KP + +
Sbjct: 184 RAKELPCIEIKGVDCHIGSQLTEIKPFLDAMDRM 217
>gi|307823078|ref|ZP_07653308.1| diaminopimelate decarboxylase [Methylobacter tundripaludum SV96]
gi|307735853|gb|EFO06700.1| diaminopimelate decarboxylase [Methylobacter tundripaludum SV96]
Length = 415
Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 13/98 (13%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVILCRQKY 153
++ + PV +VN + K GI Q
Sbjct: 130 LDRINRLAGQLGVIAPVSFRVNPDVDAKTHPYISTGLKENKFGIDIQQALTEYRRAAAMP 189
Query: 154 QLNVEGLMC-IPPAMGNPKPHFYLLSEIARECKLTKLS 190
++V G+ C I + +P L +I +
Sbjct: 190 HISVIGIDCHIGSQLTETRPFLDALDKILDLVAALEAE 227
>gi|330962353|gb|EGH62613.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 415
Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + + P+ ++VN + K GI +D I
Sbjct: 124 VESTDELERLQEVAAELNVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYI 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
Q L V G+ C I + +P L +
Sbjct: 184 RASQLPNLEVIGVDCHIGSQLTTLEPFIDALDRLLD 219
>gi|284051398|ref|ZP_06381608.1| alanine racemase [Arthrospira platensis str. Paraca]
gi|291568246|dbj|BAI90518.1| alanine racemase [Arthrospira platensis NIES-39]
Length = 399
Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 79 IGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIM 138
+G++ + + ++ + + T+ A L S + R LPV Q+N + + G
Sbjct: 103 LGAVHTADEIKAIAHWGLQPTLCTPTQALLFSETLQSIQRSLPV--QLNIDTGMSRLGTW 160
Query: 139 PNQTKDFVILCRQKYQLNVEGL 160
Q +FV L R L + G+
Sbjct: 161 WEQALEFVQLVRGLPNLEISGI 182
>gi|77920014|ref|YP_357829.1| diaminopimelate decarboxylase [Pelobacter carbinolicus DSM 2380]
gi|77546097|gb|ABA89659.1| diaminopimelate decarboxylase [Pelobacter carbinolicus DSM 2380]
Length = 417
Score = 35.4 bits (81), Expect = 5.6, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 40/129 (31%), Gaps = 27/129 (20%)
Query: 91 VSLFDVIET------VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ----------- 133
+ D ++ V + ++ + + + I+VN + Q
Sbjct: 109 AEIADALQAGILMFNVESRQELDTINAVAGRLGKKAGIAIRVNPDVDPQTHPYISTGMKK 168
Query: 134 -KSGIMPNQTKDFVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE- 183
K GI +Q D L L V G+ C + P + L+ + E
Sbjct: 169 AKFGINISQALDDYRLAASLPNLEVIGVDCHIGSQLTKLSPFVDAIAKIRELVQTLQNEG 228
Query: 184 CKLTKLSMG 192
+ L +G
Sbjct: 229 FGIKYLDLG 237
>gi|317048429|ref|YP_004116077.1| alanine racemase [Pantoea sp. At-9b]
gi|316950046|gb|ADU69521.1| alanine racemase [Pantoea sp. At-9b]
Length = 356
Score = 35.4 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 46/135 (34%), Gaps = 10/135 (7%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
+++ + + +V L+ + S + +Y++VN+G + G P Q
Sbjct: 89 QLIDRYRLTTSVHSNWQIQALAQ--AQLSAPIDIYVKVNSGM--NRLGFRPEQVNAAWQA 144
Query: 149 CRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAI----ASG 204
R + LM NP+ + I R + ++ A +
Sbjct: 145 LRGLANVGEMTLMAHFADAENPQGIIEPMKRIERAAEGLNCPRSLSN--SAATLWHPEAH 202
Query: 205 ATSVRIGSGIFGERP 219
VR G ++G P
Sbjct: 203 FDWVRPGIVLYGASP 217
>gi|258405461|ref|YP_003198203.1| diaminopimelate decarboxylase [Desulfohalobium retbaense DSM 5692]
gi|257797688|gb|ACV68625.1| diaminopimelate decarboxylase [Desulfohalobium retbaense DSM 5692]
Length = 418
Score = 35.4 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 15/113 (13%), Positives = 42/113 (37%), Gaps = 13/113 (11%)
Query: 83 QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQ--------- 133
Q +++ + + ++ L++ ++ + +++N + Q
Sbjct: 107 QRHEIEQALEADILMFNCESVPELELINEVAQEKGLVARISLRINPDVDPQTHPYISTGL 166
Query: 134 ---KSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
K G+ Q+++ L R ++ G+ C I + + +P L + R
Sbjct: 167 KKNKFGLNLEQSEEAYRLARDLPGVDPIGMDCHIGSQLTSIEPFLEALERLKR 219
>gi|254502163|ref|ZP_05114314.1| Alanine racemase, N-terminal domain family [Labrenzia alexandrii
DFL-11]
gi|222438234|gb|EEE44913.1| Alanine racemase, N-terminal domain family [Labrenzia alexandrii
DFL-11]
Length = 387
Score = 35.4 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 86 KVSEIVSLFDV----IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPN 140
K+ + L + + V + LS ++ L V+I+++ G + G+ +
Sbjct: 112 KIKRLAQLPKLGARTLVCVDDIDNVAELSAAAVEAGTTLEVFIEIDCG--AGRCGVTTTD 169
Query: 141 QTKDFVILCRQKYQLNVEGL 160
+ L G+
Sbjct: 170 AVVEIANAVDAAPGLKFTGI 189
>gi|332534419|ref|ZP_08410259.1| diaminopimelate decarboxylase [Pseudoalteromonas haloplanktis
ANT/505]
gi|332036153|gb|EGI72628.1| diaminopimelate decarboxylase [Pseudoalteromonas haloplanktis
ANT/505]
Length = 417
Score = 35.4 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 13/94 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V +S + + P+ I+VN + K GI
Sbjct: 124 VESASELERISEVACELNLEAPISIRVNPDIDAKTHPYISTGLKENKFGIDIQTAVSVYQ 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEI 180
L V G+ C I + +P L ++
Sbjct: 184 QAAALPGLKVIGVDCHIGSQLTQVRPFLEALDKL 217
>gi|116075736|ref|ZP_01472995.1| alanine racemase [Synechococcus sp. RS9916]
gi|116067051|gb|EAU72806.1| alanine racemase [Synechococcus sp. RS9916]
Length = 410
Score = 35.4 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 47/228 (20%), Positives = 83/228 (36%), Gaps = 32/228 (14%)
Query: 14 IENSAILAKRP-KDSVSLVAVSK----MVDSKKI-RVALSCGQVIFAENKLQEAKKKWIP 67
IE++A +R K + +L+AV K + + R A+ G LQE
Sbjct: 52 IESNARALRRLLKPTCALMAVVKADGYGHGATTVARAAVQGGAAQLGVATLQEGID---L 108
Query: 68 LRKEWDVQLRFIGSL-QSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQV 126
R + + +G+L Q + + + ++ T+S + A L R +Q+
Sbjct: 109 RRAGLEQPILVLGNLTQPDDLRACLQW-QLMPTLSSMREALLCQNLADGSGR--QFAVQL 165
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-IPPAMGNPKPH-----------F 174
+ + G +Q QL++ G+ + A G+P+ F
Sbjct: 166 KLDTGMNRLGCAWEDAPRLTEAIQQLNQLHLCGIYSHLALADGDPEGDGDRVTRLQQTRF 225
Query: 175 -YLLSEIARECKLTKL--SMGMTRDFELAIASGATSVRIGSGIFGERP 219
+L + L L S G RD L VR+G ++G P
Sbjct: 226 NEVLHHLPEHQALHHLANSAGTLRDPGL----HHDLVRVGLALYGHSP 269
>gi|148652160|ref|YP_001279253.1| diaminopimelate decarboxylase [Psychrobacter sp. PRwf-1]
gi|148571244|gb|ABQ93303.1| diaminopimelate decarboxylase [Psychrobacter sp. PRwf-1]
Length = 445
Score = 35.4 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L+ + + P+ I+VN + K GI +
Sbjct: 152 VESLSELDTLNAVAAELNVKAPISIRVNPDVDAKTHPYISTGLKDNKFGISHDIAVAAYQ 211
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
L + G+ C I + P L ++
Sbjct: 212 HAASLEHLQIVGIDCHIGSQLTEIDPFVAALDKVCE 247
>gi|77163847|ref|YP_342372.1| diaminopimelate decarboxylase [Nitrosococcus oceani ATCC 19707]
gi|254436067|ref|ZP_05049574.1| diaminopimelate decarboxylase [Nitrosococcus oceani AFC27]
gi|76882161|gb|ABA56842.1| diaminopimelate decarboxylase [Nitrosococcus oceani ATCC 19707]
gi|207089178|gb|EDZ66450.1| diaminopimelate decarboxylase [Nitrosococcus oceani AFC27]
Length = 417
Score = 35.4 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ K + PV ++VN TG K GI +Q
Sbjct: 125 VESEAELIRLNEIAGKLEQRAPVSLRVNPDVDARTHPYIATGLRDNKFGIEIDQALAVYA 184
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
+++ G L + P + + L+ ++A K+ + +G
Sbjct: 185 RAATLPHIDILGVDCHIGSQLTSLSPFLAALERVLALVDQLAERGIKIRHIDLG 238
>gi|172040373|ref|YP_001800087.1| hypothetical protein cur_0693 [Corynebacterium urealyticum DSM
7109]
gi|171851677|emb|CAQ04653.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
Length = 462
Score = 35.4 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 14/77 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQV------------NTGYEIQKSGIMPN--QTKDF 145
+ + + LS V ++V T +E QK G + K
Sbjct: 154 IDSLQEIAELSRVARDLGTTQDVLVRVTPGVHVDTHEFIATSHEDQKFGFSLASGKAKQA 213
Query: 146 VILCRQKYQLNVEGLMC 162
C L + GL C
Sbjct: 214 AEECLAADGLVLRGLHC 230
>gi|6708455|gb|AAF25943.1|AF214487_1 alanine racemase [Mycobacterium avium]
Length = 391
Score = 35.4 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 19/136 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR---QKYQLN 156
+S ++ L + R V ++V+TG + ++G+ P Q + R + +
Sbjct: 113 LSSQRQLDELLTAVRDTGRTATVTVKVDTG--LNRNGVPPAQYPSMLTALRRAVAEQAIV 170
Query: 157 VEGLMC-IPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT--------- 206
GLM + A P + ++ + G+ FE+A S ++
Sbjct: 171 PRGLMSHMVYADQPANPVNDVQAQRFTDMLAQAREQGV--RFEVAHLSNSSATMSRPDLA 228
Query: 207 --SVRIGSGIFGERPC 220
VR G ++G P
Sbjct: 229 FDMVRPGIAVYGLSPV 244
>gi|326405358|ref|YP_004285440.1| alanine racemase [Acidiphilium multivorum AIU301]
gi|325052220|dbj|BAJ82558.1| alanine racemase [Acidiphilium multivorum AIU301]
Length = 357
Score = 35.4 bits (81), Expect = 5.8, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 33/117 (28%), Gaps = 7/117 (5%)
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP 170
P ++ + + + G+ ++ + L + +M A P
Sbjct: 109 RGAAGDDEAPPSFL--HLDTGMNRLGLDRDEAAHLIAHPTLLDGLGLTHVMTHLVAAEEP 166
Query: 171 KP-----HFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGSGIFGERPCQT 222
+ A + S+ + L G+ R G ++G P T
Sbjct: 167 DASANAAQRERFAAFAARFPWLRTSLANSSGLFLGPGFGSDLARPGYALYGGNPTPT 223
>gi|239815227|ref|YP_002944137.1| alanine racemase domain protein [Variovorax paradoxus S110]
gi|239801804|gb|ACS18871.1| alanine racemase domain protein [Variovorax paradoxus S110]
Length = 381
Score = 35.4 bits (81), Expect = 5.8, Method: Composition-based stats.
Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 3/82 (3%)
Query: 86 KVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN-QTKD 144
K++ + ++ V + A+ L+ + L V V+ G ++G Q +
Sbjct: 111 KLARLAGPGGMMVVVDDPRNAADLAAATLGLPHPLEVL--VDYGAGYNRTGAASEAQVLE 168
Query: 145 FVILCRQKYQLNVEGLMCIPPA 166
+ +L + GL
Sbjct: 169 LARRIAAEPRLKLRGLQAYAGN 190
>gi|170768101|ref|ZP_02902554.1| alanine racemase [Escherichia albertii TW07627]
gi|170122867|gb|EDS91798.1| alanine racemase [Escherichia albertii TW07627]
Length = 356
Score = 35.4 bits (81), Expect = 5.8, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 9/141 (6%)
Query: 81 SLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPN 140
Q ++ + L + + + K +L+ + L +Y++VN+G + G+ P
Sbjct: 84 HAQDLEIYDQYRLTTCVHSNWQLK-----ALQNARLKAPLDIYLKVNSGM--NRLGVSPE 136
Query: 141 QTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECK--LTKLSMGMTRDFE 198
+ R + LM +P ++ I + + + S+ +
Sbjct: 137 RVLTVWQQLRAMTNVGEMTLMSHFAGAEHPDGITDAMARIDQAAEGLACRRSLSNSAATL 196
Query: 199 LAIASGATSVRIGSGIFGERP 219
+ VR G ++G P
Sbjct: 197 WHPEAHFDWVRPGIILYGASP 217
>gi|260576231|ref|ZP_05844223.1| diaminopimelate decarboxylase [Rhodobacter sp. SW2]
gi|259021499|gb|EEW24803.1| diaminopimelate decarboxylase [Rhodobacter sp. SW2]
Length = 421
Score = 35.4 bits (81), Expect = 5.8, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E LS + P+ ++VN TG + K GI ++
Sbjct: 124 VESEPELRALSQVATELGLTAPIALRVNPDVDARTHEKIATGKKENKFGIPISRAPQVYA 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
+ L V G+ I + +P +IA
Sbjct: 184 EAARLPGLQVVGIDVHIGSQLTELEPFEQAFQKIAD 219
>gi|326382075|ref|ZP_08203768.1| diaminopimelate decarboxylase [Gordonia neofelifaecis NRRL B-59395]
gi|326199501|gb|EGD56682.1| diaminopimelate decarboxylase [Gordonia neofelifaecis NRRL B-59395]
Length = 473
Score = 35.4 bits (81), Expect = 5.9, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 14/75 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQV------------NTGYEIQKSGIMPNQ--TKDF 145
+ L ++ V ++V +T +E QK G D
Sbjct: 160 LDSMVEIERLDRLAGERGVVADVLVRVTPGVEAHTHEFISTAHEDQKFGFALAGGVALDA 219
Query: 146 VILCRQKYQLNVEGL 160
V L + GL
Sbjct: 220 VRAVFAADNLRLVGL 234
>gi|300690200|ref|YP_003751195.1| diaminopimelate decarboxylase [Ralstonia solanacearum PSI07]
gi|299077260|emb|CBJ49886.1| Diaminopimelate decarboxylase [Ralstonia solanacearum PSI07]
Length = 419
Score = 35.4 bits (81), Expect = 5.9, Method: Composition-based stats.
Identities = 10/75 (13%), Positives = 20/75 (26%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V L+ + PV +++N + K G+ +
Sbjct: 125 VESIPELHRLNEVAGSLGKTAPVSLRINPDVDAKTHPYISTGLKGNKFGVAFEEVLPTYR 184
Query: 148 LCRQKYQLNVEGLMC 162
L + G+ C
Sbjct: 185 AAAAMPNLRMVGIDC 199
>gi|162146534|ref|YP_001600993.1| alanine racemase, catabolic [Gluconacetobacter diazotrophicus PAl
5]
gi|161785109|emb|CAP54653.1| putative alanine racemase, catabolic [Gluconacetobacter
diazotrophicus PAl 5]
Length = 387
Score = 35.4 bits (81), Expect = 5.9, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 37/126 (29%), Gaps = 7/126 (5%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
++ + + + R LP +QV++G + G+ +
Sbjct: 115 LNSLEQIARWRDLARQAGRDLPAALQVDSGM--SRFGLSDADVDALAARDGSLAGITPLL 172
Query: 160 LMCIPPAMGNPK-PHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT----SVRIGSGI 214
+M P P + + + + + G+ VR G+ +
Sbjct: 173 VMSHLACADEPAHPANHAQRAAFLRLRARLPAAPASLAASSGLFMGSDWHFDMVRPGAAL 232
Query: 215 FGERPC 220
+G P
Sbjct: 233 YGINPT 238
>gi|302529808|ref|ZP_07282150.1| diaminopimelate decarboxylase [Streptomyces sp. AA4]
gi|302438703|gb|EFL10519.1| diaminopimelate decarboxylase [Streptomyces sp. AA4]
Length = 479
Score = 35.4 bits (81), Expect = 5.9, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 33/126 (26%), Gaps = 28/126 (22%)
Query: 88 SEIVSLFDVIET------VSREKTASLLSLEMIKQSRFLPVYIQV------------NTG 129
+ L +E V + L+ V ++V T
Sbjct: 143 KSVAELDAAVEAGVGTVVVDSYYEIARLAEIAAAHEIEQKVLVRVTVGVEAHTHEFIATA 202
Query: 130 YEIQKSGIMPN--QTKDFVILCRQKYQLNVEGL--------MCIPPAMGNPKPHFYLLSE 179
+E QK G + V L + GL + LL++
Sbjct: 203 HEDQKFGFSLASGDAAEAVRRVLNAPSLKLVGLHSHIGSQIFDADGFEVAARRVVGLLAD 262
Query: 180 IARECK 185
+A+E
Sbjct: 263 LAKEHG 268
>gi|260061620|ref|YP_003194700.1| D-threonine aldolase, metal-activated pyridoxal enzyme
[Robiginitalea biformata HTCC2501]
gi|88785752|gb|EAR16921.1| D-threonine aldolase, metal-activated pyridoxal enzyme
[Robiginitalea biformata HTCC2501]
Length = 377
Score = 35.4 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 12/95 (12%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMP-NQTKDFVILCRQKYQLNVE 158
V E+T L + + +Y+ +NTG + ++GI+P L
Sbjct: 124 VDHEETLKALGELATSHNAQIRLYLDLNTGMD--RTGIVPGAAAAALYRKIAAHPHLEAC 181
Query: 159 GLMCIPPA---------MGNPKPHFYLLSEIAREC 184
GL F ++++ +
Sbjct: 182 GLHAYDGHNRQTDTSERQAAADKAFEGVAKLRDQL 216
>gi|296268597|ref|YP_003651229.1| alanine racemase [Thermobispora bispora DSM 43833]
gi|296091384|gb|ADG87336.1| alanine racemase [Thermobispora bispora DSM 43833]
Length = 381
Score = 35.4 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 36/249 (14%), Positives = 70/249 (28%), Gaps = 46/249 (18%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKM-------VDSKKIRVALSCGQVIFAENKLQ 59
L + + A A L+AV K V R ++ G +
Sbjct: 18 LAAVRHNVSLLAEHAG----GAELMAVVKADGYGHGAVPVA--RTCVAAGAARIGTALVT 71
Query: 60 EAKKKWIPLRKEWDVQLRFI-GSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
EA + F G + + L + ++ + R
Sbjct: 72 EAIALRDAGITAPILAWIFTPGERPDEALRRDIEL-----SAGALWAIDEIAAAARRTGR 126
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVIL---CRQKYQLNVEGLMCIPPAMGNPKP--H 173
V+++V+TG ++G + + + + + + G+ P+ +
Sbjct: 127 TAKVHLKVDTGM--SRAGATLDDWPALLQHALAVQAEGSIEITGIWSHLACADTPENPVN 184
Query: 174 FYLLSEIARECKLTKLSMGMTRDFELAIASGAT---------SVRIGSGI---------- 214
L+ + ++ + + S AT VR G I
Sbjct: 185 ERQLAVFDQALRIADKAGVSSGVIRHIANSAATLTLPAARYDMVRPGIAIYGLSPAPRHG 244
Query: 215 -FGERPCQT 222
FG RP T
Sbjct: 245 DFGLRPAMT 253
>gi|294101224|ref|YP_003553082.1| alanine racemase [Aminobacterium colombiense DSM 12261]
gi|293616204|gb|ADE56358.1| alanine racemase [Aminobacterium colombiense DSM 12261]
Length = 374
Score = 35.4 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 14/128 (10%)
Query: 105 TASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIP 164
A LS ++ + P Y V + + G P++ D V LN+EG+
Sbjct: 108 IAKALSDASVRLQK--PAYGHVKIDSGMGRIGFFPHEAADAVEEISHLPGLNLEGIFT-H 164
Query: 165 PAMGNPKPHFYLLSEIARECK-LTKLS-MGMTRDFELAIASGATS---------VRIGSG 213
A+ + + Y + + K + +L G+T + SGAT VR G
Sbjct: 165 FAISDARDLTYTYEQHSTFVKVIGELEKRGITFSIKHCCNSGATLALPQFVMDGVRPGQL 224
Query: 214 IFGERPCQ 221
+ G P +
Sbjct: 225 VVGMYPSK 232
>gi|218263199|ref|ZP_03477397.1| hypothetical protein PRABACTJOHN_03080 [Parabacteroides johnsonii
DSM 18315]
gi|218222875|gb|EEC95525.1| hypothetical protein PRABACTJOHN_03080 [Parabacteroides johnsonii
DSM 18315]
Length = 240
Score = 35.4 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 16/102 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V +L +++ P+ +++N TG + K GI +Q +
Sbjct: 136 VESAAELEILDELAAAKNKVAPIALRINPEVDAHTHAKITTGMKENKFGINLSQLGQVLD 195
Query: 148 LCRQKYQLNVEGLMCIPPAMGNPKPHFYLL----SEIARECK 185
L + + G+ C + F L +EI + K
Sbjct: 196 LVSHLEHIKLIGIHCHIGSQITDMAAFRGLVIRVNEIRKNWK 237
>gi|111018490|ref|YP_701462.1| diaminopimelate decarboxylase [Rhodococcus jostii RHA1]
gi|110818020|gb|ABG93304.1| diaminopimelate decarboxylase [Rhodococcus jostii RHA1]
Length = 473
Score = 35.4 bits (81), Expect = 6.0, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 24/93 (25%), Gaps = 20/93 (21%)
Query: 88 SEIVSLFDVIET------VSREKTASLLSLEMIKQSRFLPVYIQV------------NTG 129
+ L + + L + V I+V +T
Sbjct: 143 KSVAELNAAVSARVGHIVLDSATEIDRLDKVAAEAGVVQDVLIRVTVGVEAHTHEFISTA 202
Query: 130 YEIQKSGIMPN--QTKDFVILCRQKYQLNVEGL 160
+E QK G + D V L + GL
Sbjct: 203 HEDQKFGFSLAGGKAIDAVRRVFAAGNLRLVGL 235
>gi|307352940|ref|YP_003893991.1| bifunctional deaminase-reductase domain-containing protein
[Methanoplanus petrolearius DSM 11571]
gi|307156173|gb|ADN35553.1| bifunctional deaminase-reductase domain protein [Methanoplanus
petrolearius DSM 11571]
Length = 227
Score = 35.4 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 25 KDSVSLVAVSKMVDSKKIRVALSCG--QVIFAENKL 58
D+ +L+AVSK + IR+ G V E+K+
Sbjct: 99 PDAPTLIAVSKKASPENIRILEDKGADVVCVGEDKV 134
>gi|300115384|ref|YP_003761959.1| alanine racemase [Nitrosococcus watsonii C-113]
gi|299541321|gb|ADJ29638.1| alanine racemase [Nitrosococcus watsonii C-113]
Length = 356
Score = 35.4 bits (81), Expect = 6.1, Method: Composition-based stats.
Identities = 47/226 (20%), Positives = 81/226 (35%), Gaps = 27/226 (11%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVALSCGQVIFAENK 57
+L + LQ ++ LA R ++AV K + AL FA +
Sbjct: 12 ALRHNLQRVRE-------LAPRS----RIMAVVKADGYGHGLTSVAGALVA-ADAFAVAR 59
Query: 58 LQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQS 117
L+EA + V L I + +++ L V+ + A L LE +
Sbjct: 60 LEEAMALRQAGHRCPVVLLGGIADKEQLQLAAAHRLTLVVH-----EFAQLELLERVPII 114
Query: 118 RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL-NVEGLMC-IPPAMGNPKPHFY 175
LPV+++ +TG + G P + V R + +V G+M + A +
Sbjct: 115 SPLPVWLKADTGM--HRLGFSPEVAAEAVARLRGCPAVASVVGVMTHLASADESEDSLTP 172
Query: 176 LLSEIARECKLTKLSMGMTRDFELAIASGAT--SVRIGSGIFGERP 219
+ ++ E L M + I VR G ++G P
Sbjct: 173 IQLQVFEEIAAPGLLRSMANSAAVIIYPHVHFDWVRPGLMLYGASP 218
>gi|126700194|ref|YP_001089091.1| ribulose-phosphate 3-epimerase [Clostridium difficile 630]
gi|254976166|ref|ZP_05272638.1| ribulose-phosphate 3-epimerase [Clostridium difficile QCD-66c26]
gi|255093556|ref|ZP_05323034.1| ribulose-phosphate 3-epimerase [Clostridium difficile CIP 107932]
gi|255307608|ref|ZP_05351779.1| ribulose-phosphate 3-epimerase [Clostridium difficile ATCC 43255]
gi|255315299|ref|ZP_05356882.1| ribulose-phosphate 3-epimerase [Clostridium difficile QCD-76w55]
gi|255517967|ref|ZP_05385643.1| ribulose-phosphate 3-epimerase [Clostridium difficile QCD-97b34]
gi|255651083|ref|ZP_05397985.1| ribulose-phosphate 3-epimerase [Clostridium difficile QCD-37x79]
gi|260684148|ref|YP_003215433.1| ribulose-phosphate 3-epimerase [Clostridium difficile CD196]
gi|260687807|ref|YP_003218941.1| ribulose-phosphate 3-epimerase [Clostridium difficile R20291]
gi|306520936|ref|ZP_07407283.1| ribulose-phosphate 3-epimerase [Clostridium difficile QCD-32g58]
gi|115251631|emb|CAJ69464.1| Ribulose-phosphate 3-epimerase (Pentose-5-phosphate 3-epimerase)
(PPE) (R5P3E) [Clostridium difficile]
gi|260210311|emb|CBA64627.1| ribulose-phosphate 3-epimerase [Clostridium difficile CD196]
gi|260213824|emb|CBE05804.1| ribulose-phosphate 3-epimerase [Clostridium difficile R20291]
Length = 223
Score = 35.4 bits (81), Expect = 6.2, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 12/102 (11%)
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKL 186
N K+G++ N + L++ LM + P G +L +I +E K
Sbjct: 103 NIKSHGIKAGVVLNPATPVDTIKHVLPDLDMVLLMSVNPGFGGQSFIPCVLDKI-KELKA 161
Query: 187 TKLSMGMTRDFEL-----------AIASGATSVRIGSGIFGE 217
S G+ D E+ + +GA + GS IFG
Sbjct: 162 IIDSQGLNIDIEVDGGISPKNVAEVVQAGANVIVAGSAIFGS 203
>gi|237747395|ref|ZP_04577875.1| diaminopimelate decarboxylase [Oxalobacter formigenes HOxBLS]
gi|229378746|gb|EEO28837.1| diaminopimelate decarboxylase [Oxalobacter formigenes HOxBLS]
Length = 431
Score = 35.4 bits (81), Expect = 6.2, Method: Composition-based stats.
Identities = 12/94 (12%), Positives = 28/94 (29%), Gaps = 13/94 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V ++ + + + +VN + K GI +
Sbjct: 133 VESFAELQRINRIASEMGKKARISFRVNPDVDPKTHPYISTGLKENKFGIPFEEALSCYE 192
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEI 180
+ ++V G+ C I + + P L ++
Sbjct: 193 QASKMTHIDVTGIDCHIGSQLLDDSPLLEALDKL 226
>gi|330941151|gb|EGH44030.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. pisi str.
1704B]
Length = 415
Score = 35.4 bits (81), Expect = 6.3, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + + P+ ++VN + K GI +D I
Sbjct: 124 VESTDELERLQEVAAELNVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYI 183
Query: 148 LCRQKYQLNVEGLMC 162
Q L V G+ C
Sbjct: 184 RASQLPNLKVIGVDC 198
>gi|254821292|ref|ZP_05226293.1| LysA_2 [Mycobacterium intracellulare ATCC 13950]
Length = 472
Score = 35.4 bits (81), Expect = 6.3, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 28/138 (20%)
Query: 88 SEIVSLFDVIET------VSREKTASLLSLEMIKQSRFLPVYIQ------------VNTG 129
+ L ++ + L+ + V+++ ++T
Sbjct: 143 KSVAELTAAVKAGVGHVVLDSMTEIERLNTIAGEAGIVQDVFVRLTVGVEAHTHEFISTA 202
Query: 130 YEIQKSGIMPN--QTKDFVILCRQKYQLNVEGL--------MCIPPAMGNPKPHFYLLSE 179
+E QK G+ V + L V GL + + LL E
Sbjct: 203 HEDQKFGLSVASGAALAAVGRVFEAEHLRVVGLHSHIGSQIFDVAGFELAARRVLGLLHE 262
Query: 180 IARECKLTKLSMGMTRDF 197
+ + K + T D
Sbjct: 263 AVEQFGVEKTAQISTVDL 280
>gi|163857474|ref|YP_001631772.1| catabolic alanine racemase [Bordetella petrii DSM 12804]
gi|226711028|sp|A9IU63|ALR_BORPD RecName: Full=Alanine racemase
gi|163261202|emb|CAP43504.1| catabolic alanine racemase [Bordetella petrii]
Length = 376
Score = 35.4 bits (81), Expect = 6.4, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 60/143 (41%), Gaps = 16/143 (11%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ---TKDF 145
+++ + + TV + +L+ + SR + + +++N+G + G P+
Sbjct: 98 DLIDRYHLSATVHTREQLDMLAQ--ARLSRRVDIMLKLNSGM--NRLGFDPDAYGSAHAR 153
Query: 146 VILCRQKYQLNVEGLMC-IPPAMGNPK-----PHFYLLSEIARECKLTKLSMGMTRDF-E 198
+ R++ + G M A G P F +++ + ++ + T + E
Sbjct: 154 ALQLREQGVVGAVGRMTHFACADGTPGVAGQLRVFQSVTQGLADGPVSVCNSAATLRYPE 213
Query: 199 LAIASGA--TSVRIGSGIFGERP 219
+A+A GA VR G ++G P
Sbjct: 214 IAVAHGAQAHWVRPGICLYGASP 236
>gi|54023015|ref|YP_117257.1| putative diaminopimelate decarboxylase [Nocardia farcinica IFM
10152]
gi|54014523|dbj|BAD55893.1| putative diaminopimelate decarboxylase [Nocardia farcinica IFM
10152]
Length = 473
Score = 35.4 bits (81), Expect = 6.4, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 14/74 (18%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQV------------NTGYEIQKSGIMPN--QTKDFV 146
L + V ++V +T +E QK G + +
Sbjct: 162 DSLIEIERLEAVAERAGVVQDVLVRVTVGVEAHTHEYISTAHEDQKFGFSIAGGDAMEAL 221
Query: 147 ILCRQKYQLNVEGL 160
+ L + GL
Sbjct: 222 ARVFEASNLRLVGL 235
>gi|325206881|gb|ADZ02334.1| diaminopimelate decarboxylase [Neisseria meningitidis M04-240196]
Length = 406
Score = 35.4 bits (81), Expect = 6.5, Method: Composition-based stats.
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 12/74 (16%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVIL 148
+ + + PV +++N + K GI +
Sbjct: 117 ESIPEIDRIQKVAARLGKTAPVSLRINPDVDAKTHPYISTGLKANKFGIAYADALEAYRH 176
Query: 149 CRQKYQLNVEGLMC 162
Q+ L + G+ C
Sbjct: 177 AAQQPNLKIIGIDC 190
>gi|323345490|ref|ZP_08085713.1| diaminopimelate decarboxylase [Prevotella oralis ATCC 33269]
gi|323093604|gb|EFZ36182.1| diaminopimelate decarboxylase [Prevotella oralis ATCC 33269]
Length = 385
Score = 35.4 bits (81), Expect = 6.5, Method: Composition-based stats.
Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 12/73 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V + +++ K+ + + +++N TG K GI ++ +
Sbjct: 113 VESLEELEVINELAEKKDKTAKIALRINPDVGAHTHVNIKTGLAENKFGISIIDMENVIT 172
Query: 148 LCRQKYQLNVEGL 160
+ + GL
Sbjct: 173 QAASMKNIKIIGL 185
>gi|312884202|ref|ZP_07743913.1| diaminopimelate decarboxylase [Vibrio caribbenthicus ATCC BAA-2122]
gi|309368130|gb|EFP95671.1| diaminopimelate decarboxylase [Vibrio caribbenthicus ATCC BAA-2122]
Length = 417
Score = 35.4 bits (81), Expect = 6.5, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + P+ +++N TG K GI +
Sbjct: 125 VESEPELERLNQVAGELGVVAPISLRINPDVDAKTHPYISTGLRDNKFGIAFERASTVYD 184
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
+ L+++G+ C I P + L+ ++ + + L +G
Sbjct: 185 FAQSLPHLSIKGIDCHIGSQLTEIEPFIDATDRLLKLIDDLKTQGINIRHLDVG 238
>gi|255636652|gb|ACU18663.1| unknown [Glycine max]
Length = 488
Score = 35.4 bits (81), Expect = 6.5, Method: Composition-based stats.
Identities = 9/73 (12%), Positives = 25/73 (34%), Gaps = 13/73 (17%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
+ E ++ + + + V +++N + K GI + + F+
Sbjct: 192 IDSEFDLENITEAAKRAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLD 251
Query: 148 LCRQKYQ-LNVEG 159
++ L + G
Sbjct: 252 AVKELPNELKLVG 264
>gi|78189593|ref|YP_379931.1| alanine racemase region [Chlorobium chlorochromatii CaD3]
gi|78171792|gb|ABB28888.1| alanine racemase [Chlorobium chlorochromatii CaD3]
Length = 366
Score = 35.4 bits (81), Expect = 6.5, Method: Composition-based stats.
Identities = 19/127 (14%), Positives = 33/127 (25%), Gaps = 29/127 (22%)
Query: 113 MIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKP 172
R L V+ V + + G+ P++ + L + G+ P
Sbjct: 115 AAALERPLQVH--VKIDSGMGRLGVAPHEAMALLQAVDASPFLELTGVYTHFADSATPNS 172
Query: 173 HFYLLSEIARECKLTKLSMGMTRDFELAI-----ASGAT-------------SVRIGSGI 214
+ I + +E A A VR G +
Sbjct: 173 FTHQQLAIFKTIAAE---------YEHAAQRTICKHTANSGALLSLQASWCDMVRPGILL 223
Query: 215 FGERPCQ 221
+G P Q
Sbjct: 224 YGYHPSQ 230
>gi|330964219|gb|EGH64479.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 415
Score = 35.4 bits (81), Expect = 6.5, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + P+ ++VN + K GI +D I
Sbjct: 124 VESTDELERLQEVAAELDVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYI 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
Q L V G+ C I + +P L +
Sbjct: 184 RASQLPNLEVIGVDCHIGSQLTTLEPFIDALDRLLD 219
>gi|307546848|ref|YP_003899327.1| diaminopimelate decarboxylase [Halomonas elongata DSM 2581]
gi|307218872|emb|CBV44142.1| diaminopimelate decarboxylase [Halomonas elongata DSM 2581]
Length = 429
Score = 35.4 bits (81), Expect = 6.6, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 20/75 (26%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + V ++VN + K GI ++ +
Sbjct: 124 VESRAELERLDAVARGLGKVASVSLRVNPDVDAGTHPYISTGLKDNKFGIPVDEAFEVYR 183
Query: 148 LCRQKYQLNVEGLMC 162
+ V GL C
Sbjct: 184 QAAGMDNVRVAGLDC 198
>gi|238061049|ref|ZP_04605758.1| alanine racemase [Micromonospora sp. ATCC 39149]
gi|237882860|gb|EEP71688.1| alanine racemase [Micromonospora sp. ATCC 39149]
Length = 372
Score = 35.0 bits (80), Expect = 6.6, Method: Composition-based stats.
Identities = 36/257 (14%), Positives = 67/257 (26%), Gaps = 65/257 (25%)
Query: 7 LQVFKQKIENSAILAKRPKDSVSLVAVSKMVD-----SKKIRVALSCGQVIFAENKL--- 58
L ++ + + A + L+AV K R AL G +
Sbjct: 10 LDAIRENVTR--LRAGTSAE---LMAVVKGDGYGHGMLPSARAALDAGADWLG---VCTL 61
Query: 59 QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVS--------REKTASLLS 110
EA + + + E V+ + +
Sbjct: 62 DEALALRRAGIDAPVLAW------------LLAPGLPLHEGVAVGVDLAAASLTQLAEMV 109
Query: 111 LEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY---QLNVEGL---MCIP 164
R ++++++TG + + G + + + V G+
Sbjct: 110 EASQLAGRPARLHLKIDTG--LARGGATVADWPALLEAAAKAQADGLIEVVGVWSHFVYA 167
Query: 165 PAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATS---------VRIGSGI- 214
G+P L+ + + G+ + S AT VR G I
Sbjct: 168 DLPGHPTTD-RQLAIFHEGLDMVER-AGLRPRYRHLANSAATLTRPDTHFDLVRPGIAIY 225
Query: 215 ---------FGERPCQT 222
FG RP T
Sbjct: 226 GLSPVAGERFGLRPAMT 242
>gi|262278116|ref|ZP_06055901.1| diaminopimelate decarboxylase [Acinetobacter calcoaceticus RUH2202]
gi|262258467|gb|EEY77200.1| diaminopimelate decarboxylase [Acinetobacter calcoaceticus RUH2202]
Length = 416
Score = 35.0 bits (80), Expect = 6.7, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 13/86 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + + P+ ++VN + K GI + +
Sbjct: 123 VESYAELDRLQKVAARLGKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDTVYETYQ 182
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKP 172
L + G+ C I + KP
Sbjct: 183 YAASLPNLEIIGIDCHIGSQLTETKP 208
>gi|294853873|ref|ZP_06794545.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026]
gi|294819528|gb|EFG36528.1| conserved hypothetical protein [Brucella sp. NVSL 07-0026]
Length = 309
Score = 35.0 bits (80), Expect = 6.7, Method: Composition-based stats.
Identities = 19/167 (11%), Positives = 50/167 (29%), Gaps = 31/167 (18%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIF--- 53
+L + +I + AV K + + ++ A G F
Sbjct: 27 ALRHNYSAIATRIAPTRTA-----------AVVKADAYGLGASRVAPAFYEAGCRDFFVA 75
Query: 54 --AENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSL 111
E + + D L + LQ + ++ ++ + +
Sbjct: 76 HLGE-------AVALKPFLKPDATLYVLNGLQPGTEAACARE-GILPVLNSLEQVENWAA 127
Query: 112 EMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
+ + LP +Q +TG + G+ + + +++++
Sbjct: 128 LATRLGKKLPALLQFDTGM--SRLGLSAKEFDRLLENVTLLSRIDIK 172
>gi|114319749|ref|YP_741432.1| alanine racemase [Alkalilimnicola ehrlichii MLHE-1]
gi|114226143|gb|ABI55942.1| alanine racemase [Alkalilimnicola ehrlichii MLHE-1]
Length = 365
Score = 35.0 bits (80), Expect = 6.8, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 16/128 (12%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
V L+ L V+I+V++G + G +P + + L G
Sbjct: 104 VHSWWQVEALASAGP--HESLDVWIKVDSGM--HRLGFLPGEVAEVHRRLTALPNLRQIG 159
Query: 160 LMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA--------TSVRIG 211
+ A + + L ++ + G+ A ++G VR G
Sbjct: 160 FLT-HLAEADDRDSPRTLEQLRV---FDQACAGLPGPRSAANSAGTLGWPAAHYDWVRPG 215
Query: 212 SGIFGERP 219
++G P
Sbjct: 216 ISLYGASP 223
>gi|256824606|ref|YP_003148566.1| alanine racemase [Kytococcus sedentarius DSM 20547]
gi|256687999|gb|ACV05801.1| alanine racemase [Kytococcus sedentarius DSM 20547]
Length = 391
Score = 35.0 bits (80), Expect = 6.9, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 6/114 (5%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ---LN 156
VS + + R + V+++++TG + G+ P+ D RQ + L
Sbjct: 107 VSAPWALDAVRDAARRAGRPVRVHLELDTGM--SRGGLAPSDWPDLFARARQAEREGSLT 164
Query: 157 VEGLMCIPPAMGNPK-PHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVR 209
V+G+ +P P + + G+ + S AT R
Sbjct: 165 VQGVFSHLACADDPGHPATDHQRDAFERGLAAAVRAGLDPRWRHLANSAATLTR 218
>gi|312144490|ref|YP_003995936.1| alanine racemase domain protein [Halanaerobium sp. 'sapolanicus']
gi|311905141|gb|ADQ15582.1| alanine racemase domain protein [Halanaerobium sp. 'sapolanicus']
Length = 357
Score = 35.0 bits (80), Expect = 6.9, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC-------IPPAM 167
K ++ + V I V+ G ++ G++ K+ + L ++G+ + P
Sbjct: 114 KLNKEIKVIIMVDLG--DRREGVLAENLKELAAEIIKLDGLKLDGIGTNLGCFAGVLPDE 171
Query: 168 GNPKPHFYLLSEIARE--CKLTKLSMG 192
N K E+ +E K+ ++S G
Sbjct: 172 KNTKELIKYKKELEKEFSIKINRISAG 198
>gi|319948887|ref|ZP_08022999.1| diaminopimelate decarboxylase [Dietzia cinnamea P4]
gi|319437446|gb|EFV92454.1| diaminopimelate decarboxylase [Dietzia cinnamea P4]
Length = 472
Score = 35.0 bits (80), Expect = 7.0, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 34/121 (28%), Gaps = 28/121 (23%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQV------------NTGYEIQKSGIMPN--QTKDF 145
+ LL ++ V+I+V T +E QK G +
Sbjct: 160 IDAMSEIELLDRIAREEGVVQDVFIRVTVGVEAHTHEFIATAHEDQKFGFSLAGGAAMEA 219
Query: 146 VILCRQKYQLNVEGL--------MCIPPAMGNPKPHFYLLSEIARE------CKLTKLSM 191
V + + GL I + LL +I E +L L +
Sbjct: 220 VRAVFAASHIRLTGLHSHIGSQIFDIDGFELAARRVIGLLRDIVDEFGTERTAQLDHLDL 279
Query: 192 G 192
G
Sbjct: 280 G 280
>gi|332654124|ref|ZP_08419868.1| amino acid racemase [Ruminococcaceae bacterium D16]
gi|332517210|gb|EGJ46815.1| amino acid racemase [Ruminococcaceae bacterium D16]
Length = 364
Score = 35.0 bits (80), Expect = 7.0, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 79/232 (34%), Gaps = 38/232 (16%)
Query: 3 LGNKLQVFKQKIENSAILAKRPKDSVSLVAVSK-MVDSKKIRVALSC-GQVIFAENKLQE 60
L L +++ + S+ + V K G A +++ +
Sbjct: 18 LKENLAALQER----CQAS-----SIEISGVVKGFHALPAAAKVYEEVGVSSIASSRMDQ 68
Query: 61 AKK-KWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREK-TASLLSLEMIKQSR 118
+ K +R + I ++V ++V+ D+ +++ E+ LL Q +
Sbjct: 69 LRGLKEAGIRTPLML----IRIPMPSEVEDVVTWSDI--SLNSERSVLRLLDEAARNQGK 122
Query: 119 FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ-KYQLNVEG----LMCIPPAMGNPKPH 173
V + V+ G ++++ ++ + L + G L C P+
Sbjct: 123 THKVILMVDLG-DLREGFWDWDELVAAALEVEHDLPNLELLGMGTNLGCYGSIQATPEK- 180
Query: 174 FYLLSEIAREC------KLTKLSMGMTRDFELAIASGA-----TSVRIGSGI 214
+ L A + KL +S G + + + G +R+G GI
Sbjct: 181 MHDLVAAAEQVEKAIGRKLEVISGGASSSLHM-VLDGTMPPRINHLRVGEGI 231
>gi|255320350|ref|ZP_05361534.1| diaminopimelate decarboxylase [Acinetobacter radioresistens SK82]
gi|262379367|ref|ZP_06072523.1| diaminopimelate decarboxylase [Acinetobacter radioresistens SH164]
gi|255302545|gb|EET81778.1| diaminopimelate decarboxylase [Acinetobacter radioresistens SK82]
gi|262298824|gb|EEY86737.1| diaminopimelate decarboxylase [Acinetobacter radioresistens SH164]
Length = 416
Score = 35.0 bits (80), Expect = 7.0, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 13/94 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + K + PV ++VN + K GI + +
Sbjct: 123 VESHAELDRIQKVAKKLGQKAPVSLRVNPDVDAKTHPYISTGLKENKFGIPSDSVFETYQ 182
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEI 180
LN+ G+ C I + KP L +
Sbjct: 183 YAASLPNLNIVGIDCHIGSQLTETKPFVDALERV 216
>gi|198284947|ref|YP_002221268.1| diaminopimelate decarboxylase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218666233|ref|YP_002427632.1| diaminopimelate decarboxylase [Acidithiobacillus ferrooxidans ATCC
23270]
gi|198249468|gb|ACH85061.1| diaminopimelate decarboxylase [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218518446|gb|ACK79032.1| diaminopimelate decarboxylase [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 419
Score = 35.0 bits (80), Expect = 7.0, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V ++ + PV ++VN + K GI +Q + +
Sbjct: 123 VESAAELWRIADIAADMGKRAPVALRVNPDVDPGTHRYIATGLKESKFGIPMDQARHLYL 182
Query: 148 LCRQKYQLNVEGLMC 162
Q L ++G+ C
Sbjct: 183 QAAQHPALELKGIAC 197
>gi|254483250|ref|ZP_05096482.1| diaminopimelate decarboxylase [marine gamma proteobacterium
HTCC2148]
gi|214036473|gb|EEB77148.1| diaminopimelate decarboxylase [marine gamma proteobacterium
HTCC2148]
Length = 416
Score = 35.0 bits (80), Expect = 7.1, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 20/104 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
+ +L+ + V ++VN TG K G+ +
Sbjct: 124 LESAAELEVLAGVAAHAGKTARVSVRVNPDVDAQTHPYISTGLRENKFGVTMEEALLVYQ 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE 183
+ + V G+ C I P + K L+ E+A +
Sbjct: 184 RAAKLPNIEVVGVDCHIGSQLTQISPFIDALKRLLALIDELAEQ 227
>gi|299769073|ref|YP_003731099.1| diaminopimelate decarboxylase [Acinetobacter sp. DR1]
gi|298699161|gb|ADI89726.1| diaminopimelate decarboxylase [Acinetobacter sp. DR1]
Length = 416
Score = 35.0 bits (80), Expect = 7.1, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 13/86 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + + P+ ++VN + K GI + +
Sbjct: 123 VESYAELDRLQKVAARLGKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDTVYETYQ 182
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKP 172
L + G+ C I + KP
Sbjct: 183 YAASLPNLEIIGIDCHIGSQLTETKP 208
>gi|260430949|ref|ZP_05784920.1| alanine racemase domain protein [Silicibacter lacuscaerulensis
ITI-1157]
gi|260414777|gb|EEX08036.1| alanine racemase domain protein [Silicibacter lacuscaerulensis
ITI-1157]
Length = 373
Score = 35.0 bits (80), Expect = 7.1, Method: Composition-based stats.
Identities = 7/75 (9%), Positives = 23/75 (30%), Gaps = 4/75 (5%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
+ + + + + L + ++++ G + + G+ P+Q
Sbjct: 112 DAARRVQWL--IDTPQRLDAYLSLAADTGQTLRLSLEIDVG--LHRGGLTPDQVAGVASR 167
Query: 149 CRQKYQLNVEGLMCI 163
+ G+M
Sbjct: 168 IADHAHATLSGVMGY 182
>gi|209543468|ref|YP_002275697.1| alanine racemase [Gluconacetobacter diazotrophicus PAl 5]
gi|209531145|gb|ACI51082.1| alanine racemase [Gluconacetobacter diazotrophicus PAl 5]
Length = 387
Score = 35.0 bits (80), Expect = 7.1, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 37/132 (28%), Gaps = 19/132 (14%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEG 159
++ + + + R LP +QV++G + G+ +
Sbjct: 115 LNSLEQIARWRDLARQAGRDLPAALQVDSGM--SRFGLSDADVDALAARDGSLAGITPLL 172
Query: 160 LMCIPPAMGNP--------KPHFYLLSEIARECKLTKLSMG---MTRDFELAIASGATSV 208
+M P + F L + + M D+ V
Sbjct: 173 VMSHLACADEPAHPSNHAQRAAFLRLRARLPAAPASLAASSGLFMGSDWHF------DMV 226
Query: 209 RIGSGIFGERPC 220
R G+ ++G P
Sbjct: 227 RPGAALYGINPT 238
>gi|169342418|ref|ZP_02863482.1| alanine racemase family protein [Clostridium perfringens C str.
JGS1495]
gi|169299538|gb|EDS81602.1| alanine racemase family protein [Clostridium perfringens C str.
JGS1495]
Length = 350
Score = 35.0 bits (80), Expect = 7.1, Method: Composition-based stats.
Identities = 36/193 (18%), Positives = 67/193 (34%), Gaps = 50/193 (25%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMVDSKKIRVALSCGQVIFAENKLQEA 61
++ N + V + I+N L+AV K A G AE
Sbjct: 13 NIENNINVIRDLIQNK-----------KLIAVIKG-------EAYGLGSKEIAE-----F 49
Query: 62 KKKWIPLRKEWDVQLRFIGSLQSNKVSEIV-------------SLFDVIETVSREKTASL 108
+ + + ++ N +I+ ++I T+ E+ +
Sbjct: 50 IEDKVDIIAVGNIDESL---CLDNINKDILILSPLCTKDDFKDERDNLILTLDNEEILNE 106
Query: 109 LSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR-QKYQLNVEGLMCIPPAM 167
L E K+ V+I V+TG + GI N+ F+ + + L ++G+ +
Sbjct: 107 LDKETKKR-----VHIYVDTGM--NRMGIKSNKLDSFIERVKNEFPNLEIDGIYT---HL 156
Query: 168 GNPKPHFYLLSEI 180
N K Y L +I
Sbjct: 157 HNAKDVNYTLKQI 169
>gi|290508880|ref|ZP_06548251.1| alanine racemase [Klebsiella sp. 1_1_55]
gi|289778274|gb|EFD86271.1| alanine racemase [Klebsiella sp. 1_1_55]
Length = 356
Score = 35.0 bits (80), Expect = 7.2, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 11/131 (8%)
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
L + + + K +L+ K L +Y++VN+G + G MP + R
Sbjct: 95 RLTTSVHSNWQIK-----ALQQAKLRAPLDIYLKVNSGM--NRLGFMPERVHTVWQQLRA 147
Query: 152 KYQLNVEGLMCIPPAMGNPK---PHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSV 208
+ LM NP+ + + A + + V
Sbjct: 148 ISNVGEMTLMSHFAEAENPQGIVEPMRRIEQAAEGLNCPRSLANSAATLWHP-EAHFDWV 206
Query: 209 RIGSGIFGERP 219
R G ++G P
Sbjct: 207 RPGIVLYGASP 217
>gi|84500205|ref|ZP_00998471.1| diaminopimelate decarboxylase [Oceanicola batsensis HTCC2597]
gi|84392139|gb|EAQ04407.1| diaminopimelate decarboxylase [Oceanicola batsensis HTCC2597]
Length = 421
Score = 35.0 bits (80), Expect = 7.2, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
+ E L+ + PV ++VN TG K GI ++ ++
Sbjct: 124 IESEPELEALNEVALSMGVVAPVTVRVNPDVDARTHAKIATGKSENKFGIPISRAREVYA 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
L G+ I + + +P+ ++
Sbjct: 184 RIAALPGLEAIGIDVHIGSQLTDLEPYRQAFEKVGD 219
>gi|113461849|ref|YP_719918.1| diaminopimelate decarboxylase [Haemophilus somnus 129PT]
gi|112823892|gb|ABI25981.1| diaminopimelate decarboxylase [Haemophilus somnus 129PT]
Length = 417
Score = 35.0 bits (80), Expect = 7.2, Method: Composition-based stats.
Identities = 12/104 (11%), Positives = 32/104 (30%), Gaps = 20/104 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V ++ K + + ++VN + K G+ Q ++
Sbjct: 124 VESAAELIRINQVARKMGKIASISLRVNPDVDAHTHPYISTGLKENKFGVSVEQAREVYR 183
Query: 148 LCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSEIARE 183
Q + + G+ C + P + L+ ++ ++
Sbjct: 184 QASQLENIKIVGIDCHIGSQLTELQPFLDATDRLIVLMEQLKKD 227
>gi|307544109|ref|YP_003896588.1| hypothetical protein HELO_1520 [Halomonas elongata DSM 2581]
gi|307216133|emb|CBV41403.1| hypothetical protein HELO_1520 [Halomonas elongata DSM 2581]
Length = 403
Score = 35.0 bits (80), Expect = 7.3, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 11/99 (11%)
Query: 94 FDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI-MPNQTKDFVILCRQK 152
F + + E A L ++ L V I+ G E ++G + + +
Sbjct: 122 FHCV--IDGEDNARALGRFFSERGLTLKVLIE--LGVEGGRTGCRSVEAVSELARIVDTE 177
Query: 153 YQLNVEGLMCIPPAM--GNP----KPHFYLLSEIARECK 185
L + G+ + +P + + L E AR
Sbjct: 178 PGLALAGMEGYEGVVHAEDPVPAIRDYAARLVEAARRLD 216
>gi|269977222|ref|ZP_06184195.1| two component LuxR family transcriptional regulator [Mobiluncus
mulieris 28-1]
gi|269934525|gb|EEZ91086.1| two component LuxR family transcriptional regulator [Mobiluncus
mulieris 28-1]
Length = 234
Score = 35.0 bits (80), Expect = 7.3, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 55 ENKLQEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDV-IETVSR--EKTASLLSL 111
EN QE K K L + + + IG +SNK EI + + TV+ ++ L++
Sbjct: 149 ENGDQELKAKIEALPEHLRIIVNLIGEARSNK--EIAKDTGLSLHTVTTYIKRILKKLNI 206
Query: 112 EMIK 115
+
Sbjct: 207 RRGQ 210
>gi|325123129|gb|ADY82652.1| diaminopimelate decarboxylase [Acinetobacter calcoaceticus PHEA-2]
Length = 415
Score = 35.0 bits (80), Expect = 7.3, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 13/86 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + + P+ ++VN + K GI + +
Sbjct: 122 VESYAELDRLQKVAARLGKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDTVYETYQ 181
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKP 172
L + G+ C I + KP
Sbjct: 182 YAASLPNLEIIGIDCHIGSQLTETKP 207
>gi|269137597|ref|YP_003294297.1| alanine racemase [Edwardsiella tarda EIB202]
gi|267983257|gb|ACY83086.1| alanine racemase [Edwardsiella tarda EIB202]
gi|304557668|gb|ADM40332.1| alanine racemase [Edwardsiella tarda FL6-60]
Length = 363
Score = 35.0 bits (80), Expect = 7.3, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 11/127 (8%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQL-NV 157
V E+ L ++ R + V+++++TG + G+ P Q + F +
Sbjct: 98 AVHSEEQLQALENARLE--RPIKVWMKLDTGM--HRLGVRPEQAEAFYRRLCTCPNVAQP 153
Query: 158 EGLM-----CIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSVRIGS 212
M P G + + + K + S+ + L S VR G
Sbjct: 154 VNFMSHFSRADEPECGRTEQQLACFDDFVQG-KAGEQSIAASGGILLWPQSHRDMVRPGI 212
Query: 213 GIFGERP 219
++G P
Sbjct: 213 IMYGVSP 219
>gi|261379373|ref|ZP_05983946.1| diaminopimelate decarboxylase [Neisseria subflava NJ9703]
gi|284797820|gb|EFC53167.1| diaminopimelate decarboxylase [Neisseria subflava NJ9703]
Length = 406
Score = 35.0 bits (80), Expect = 7.4, Method: Composition-based stats.
Identities = 14/103 (13%), Positives = 29/103 (28%), Gaps = 20/103 (19%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVIL 148
+ + + PV ++VN + K GI +
Sbjct: 117 ESIPEIDRIQKVAARLGKVAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRH 176
Query: 149 CRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARE 183
+ L + G L + P + + L+ ++A E
Sbjct: 177 VSLQSHLKIVGIDCHIGSQLTDLSPLIEACERILALVDQLADE 219
>gi|237797832|ref|ZP_04586293.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331020682|gb|EGI00739.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 324
Score = 35.0 bits (80), Expect = 7.4, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + + P+ ++VN + K GI +D I
Sbjct: 124 VESTDELERLQDVAAELNVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYI 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
Q L V G+ C I + +P L + +
Sbjct: 184 RASQLPNLEVIGVDCHIGSQLTTLEPFIDALDRLLQ 219
>gi|86748627|ref|YP_485123.1| alanine racemase [Rhodopseudomonas palustris HaA2]
gi|86571655|gb|ABD06212.1| alanine racemase [Rhodopseudomonas palustris HaA2]
Length = 388
Score = 35.0 bits (80), Expect = 7.4, Method: Composition-based stats.
Identities = 24/195 (12%), Positives = 59/195 (30%), Gaps = 34/195 (17%)
Query: 44 VALSCGQVIFAENKL---QEAKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETV 100
G F + EA L + + + L + ++ +
Sbjct: 55 ALYGAGCRDF---YVAHLDEALDLRPHLPPDASIV--VLNGLPRGGEDDCAD-AGIVPVL 108
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ S K R L +Q+++G + G+ P + + + +++ +
Sbjct: 109 NSLAQLDDWSACARKAGRVLGAIVQIDSGM--SRLGLSPRELDELSH--ARLRGIDIRLV 164
Query: 161 MC------IPPAMGN--PKPHFYLLSEIARECKLTKLS-----MGMTRDFELAIASGATS 207
M + N + F L++ + + +G ++ A
Sbjct: 165 MSHLACADVADHAANAYQRARFCALADRFGGIPKSLANSSGIFLGPDFHYDAA------- 217
Query: 208 VRIGSGIFGERPCQT 222
R G+ ++G P +
Sbjct: 218 -RPGAALYGINPTSS 231
>gi|73537855|ref|YP_298222.1| D-serine deaminase [Ralstonia eutropha JMP134]
gi|72121192|gb|AAZ63378.1| dsd, RSp1185; probable D-serine deaminase (d-serine dehydratase)
protein [Ralstonia eutropha JMP134]
Length = 422
Score = 35.0 bits (80), Expect = 7.5, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 11/113 (9%)
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGI--MPNQTKDFVILC 149
F+ V L ++ + L V ++ G E ++G+ Q L
Sbjct: 137 PGFEFFSLVDSADLVDQLGAYFRERGQKLQVLLE--LGVEGGRTGVRDAAQQADVLAALA 194
Query: 150 RQKYQLNVEGLMCIPPAMGNPKPHFYLL-------SEIARECKLTKLSMGMTR 195
R L++ G+ + L EIA+E + + + M+
Sbjct: 195 RWPDALSLAGVEIYEGVLKEEADIRRFLQRTVAVTREIAQEGRFGRSPVVMSG 247
>gi|317968847|ref|ZP_07970237.1| alanine racemase [Synechococcus sp. CB0205]
Length = 405
Score = 35.0 bits (80), Expect = 7.6, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 21/137 (15%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
T+S + A L R L V+++++TG + G + V L +
Sbjct: 125 TLSGMREALLCQNLASGSGRQLAVHLKLDTGM--SRLGAPWEEGPRLVQAIAGLESLQLA 182
Query: 159 GLMCIPPAMGNPKPHFYLLSEIARE--------CKLTKLSMGMTRDFELAIASGA----- 205
G+ P L+ ++ + +L G LA ++G
Sbjct: 183 GVYSHLAGADAPGNGLDALTATQQQRFDSVLTGLQQQQLPSGCRH---LANSAGTLRSRQ 239
Query: 206 ---TSVRIGSGIFGERP 219
VR+G ++G+RP
Sbjct: 240 LHYDLVRVGLALYGQRP 256
>gi|66043452|ref|YP_233293.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. syringae
B728a]
gi|63254159|gb|AAY35255.1| Diaminopimelate decarboxylase [Pseudomonas syringae pv. syringae
B728a]
gi|330970500|gb|EGH70566.1| diaminopimelate decarboxylase [Pseudomonas syringae pv. aceris str.
M302273PT]
Length = 415
Score = 35.0 bits (80), Expect = 7.6, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + + P+ ++VN + K GI +D I
Sbjct: 124 VESTDELERLQEVAAELNVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIAAAEDVYI 183
Query: 148 LCRQKYQLNVEGLMC 162
Q L V G+ C
Sbjct: 184 RASQLPNLEVIGVDC 198
>gi|301095165|ref|XP_002896684.1| importin alpha-2 subunit [Phytophthora infestans T30-4]
gi|262108823|gb|EEY66875.1| importin alpha-2 subunit [Phytophthora infestans T30-4]
Length = 532
Score = 35.0 bits (80), Expect = 7.6, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 1 MSLGNKLQVFKQKIENSAILAKRPKDSVSLVAVSKMV---DSKK---IRVALSCGQ 50
M+L +L + + + + + +V L AV+K ++ I+ + G
Sbjct: 70 MTLQQRLSELPEMV--ACVQSG--DAAVQLEAVTKFRKLLSIERNPPIKEVIQTGV 121
>gi|237756659|ref|ZP_04585168.1| diaminopimelate decarboxylase [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237691179|gb|EEP60278.1| diaminopimelate decarboxylase [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 419
Score = 35.0 bits (80), Expect = 7.6, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
V +++ KQ + V I+VN + K GI +Q D
Sbjct: 128 VESFMELDVINEIASKQEKKANVSIRVNPNVDPKTHPYISTGLKKSKFGIDIDQALDAYK 187
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARE-CKLTKLSMG 192
+ LNV G +M + + L+ ++ +E +L + MG
Sbjct: 188 KAVKLENLNVVGVHCHIGSQIMDVSVFREAAEKVVDLVFKLKKEGIELKFIDMG 241
>gi|118471781|ref|YP_888299.1| oxidoreductase [Mycobacterium smegmatis str. MC2 155]
gi|118173068|gb|ABK73964.1| oxidoreductase [Mycobacterium smegmatis str. MC2 155]
Length = 339
Score = 35.0 bits (80), Expect = 7.6, Method: Composition-based stats.
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 13 KIENSAILAKRPKDSVSLVAVS 34
++ +A A R V++V S
Sbjct: 184 RVRKAAEQAGRDPRDVTIVVAS 205
>gi|312376135|gb|EFR23316.1| hypothetical protein AND_13111 [Anopheles darlingi]
Length = 506
Score = 35.0 bits (80), Expect = 7.7, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 13/80 (16%)
Query: 80 GSLQSNKVSEIV--------SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE 131
G+LQS +++ L IET +R + + ++ R P+ + T E
Sbjct: 401 GTLQSRNTKQLIAQNRTLHGQLQSSIETSTRNELRASIAENA--LGRMEPLLL---TDPE 455
Query: 132 IQKSGIMPNQTKDFVILCRQ 151
Q+ G P + C +
Sbjct: 456 PQRFGEEPQSVDELRTRCSE 475
>gi|288802899|ref|ZP_06408336.1| diaminopimelate decarboxylase [Prevotella melaninogenica D18]
gi|288334716|gb|EFC73154.1| diaminopimelate decarboxylase [Prevotella melaninogenica D18]
Length = 385
Score = 35.0 bits (80), Expect = 7.7, Method: Composition-based stats.
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 12/73 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V +++ K+ + V ++N TG K GI ++
Sbjct: 113 VESVAELEVINELAAKKGKTANVCFRINPDVGAQTHEKITTGLAENKFGIAMQDMLPTIL 172
Query: 148 LCRQKYQLNVEGL 160
+ ++ GL
Sbjct: 173 EASRMPNIHFIGL 185
>gi|323143200|ref|ZP_08077896.1| diaminopimelate decarboxylase [Succinatimonas hippei YIT 12066]
gi|322417041|gb|EFY07679.1| diaminopimelate decarboxylase [Succinatimonas hippei YIT 12066]
Length = 416
Score = 35.0 bits (80), Expect = 7.8, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 21/114 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
+ + +S + V ++VN TG + K GI ++
Sbjct: 124 IESVPEINAISSVAKSLGKKARVSVRVNPNVDAKTHPSISTGLKSNKFGIAYDEALAVYR 183
Query: 148 LCRQKYQLNVEGL-------MCI-PPAMGNPKPHFYLLSEIAR-ECKLTKLSMG 192
L + G+ M P + + L E+ K+ + +G
Sbjct: 184 QMAADPNLEICGIDCHIGSQMTSGAPILEATERLLDLYKELTECGIKIDHIDIG 237
>gi|212709365|ref|ZP_03317493.1| hypothetical protein PROVALCAL_00401 [Providencia alcalifaciens DSM
30120]
gi|212688277|gb|EEB47805.1| hypothetical protein PROVALCAL_00401 [Providencia alcalifaciens DSM
30120]
Length = 419
Score = 35.0 bits (80), Expect = 7.8, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 127 NTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGL-MCIPPAMGNPKPHFYLLSEIARECK 185
NTG E K GI + + +Q Y L + G+ M I + + L+ +
Sbjct: 156 NTGGENSKHGIWHQDLPEALAKIQQ-YNLKLVGIHMHIGSGVD-----YQHLANVCDSMV 209
Query: 186 LTKLSMGMTRDFELAIASG 204
+S G+ D AI++G
Sbjct: 210 ELVVSAGVDID---AISAG 225
>gi|313683296|ref|YP_004061034.1| alanine racemase [Sulfuricurvum kujiense DSM 16994]
gi|313156156|gb|ADR34834.1| alanine racemase [Sulfuricurvum kujiense DSM 16994]
Length = 338
Score = 35.0 bits (80), Expect = 7.8, Method: Composition-based stats.
Identities = 19/105 (18%), Positives = 43/105 (40%), Gaps = 13/105 (12%)
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARE 183
+++ + ++G+ P Q ++ Q+ L GLM A ++ +I
Sbjct: 107 VELKIDTGMHRNGVFPEQLEEAFEKIAQR-GLICVGLMSHFRAADTLSSEWFWQRKIFDA 165
Query: 184 CKLTKLSM----GMTRDFELAIASGA--------TSVRIGSGIFG 216
K+ ++ G + F ++ ++GA VR+G ++G
Sbjct: 166 TKIRASALAKKYGWSLRFHISNSAGAFRSAECSDDMVRVGIALYG 210
>gi|300790779|ref|YP_003771070.1| diaminopimelate decarboxylase [Amycolatopsis mediterranei U32]
gi|299800293|gb|ADJ50668.1| diaminopimelate decarboxylase [Amycolatopsis mediterranei U32]
Length = 447
Score = 35.0 bits (80), Expect = 7.9, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 12/99 (12%)
Query: 96 VIETVSREKTASLLSLEMIK------QSRFLPVYIQVNTGYEIQKSGIM-----PNQTKD 144
V++++ + L+ + + ++TG E QK G P+
Sbjct: 145 VVDSLDEIEQLGALAHGAQQVMIRVTPGVAAGAHAAISTGTEGQKFGFSLLDGVPDNVDA 204
Query: 145 FVILCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
V +++ L + GL C I + + +A
Sbjct: 205 AVEAVKRQPGLRLRGLHCHIGSQVSRVDRYEAAARRMAE 243
>gi|297616725|ref|YP_003701884.1| diaminopimelate decarboxylase [Syntrophothermus lipocalidus DSM
12680]
gi|297144562|gb|ADI01319.1| diaminopimelate decarboxylase [Syntrophothermus lipocalidus DSM
12680]
Length = 443
Score = 35.0 bits (80), Expect = 7.9, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 39/135 (28%), Gaps = 30/135 (22%)
Query: 88 SEIVSLFDVIET------VSREKTASLLSLEMIKQSRFLPVYIQ------------VNTG 129
+ L +E+ V LL + R + ++ + TG
Sbjct: 105 KTLDELVMAVESRVGRVVVDNFYEIELLENVCERLGRTQNILLRITPGVEAHTHEYIKTG 164
Query: 130 YEIQKSGIMPN--QTKDFVILCRQKYQLNVEGLMC--------IPPAMGNPKPHFYLLSE 179
K G V + L + GL C + + LL+E
Sbjct: 165 QIDSKFGFTLANGDALKAVDTVCRTKNLRLMGLHCHIGSQIFEMDAYAHATEIMVDLLAE 224
Query: 180 IARE--CKLTKLSMG 192
I +L +L+MG
Sbjct: 225 IKNRFGLELEELNMG 239
>gi|304320595|ref|YP_003854238.1| Orn/DAP/Arg decarboxylase, family 2 [Parvularcula bermudensis
HTCC2503]
gi|303299497|gb|ADM09096.1| Orn/DAP/Arg decarboxylase, family 2 [Parvularcula bermudensis
HTCC2503]
Length = 419
Score = 35.0 bits (80), Expect = 7.9, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 12/73 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E + LS + PV ++VN TG + K G+
Sbjct: 124 VESEAELAHLSAVASALGKTAPVALRVNPDVDAGTDTRISTGRKDDKFGVPFADAGRLYR 183
Query: 148 LCRQKYQLNVEGL 160
L L +GL
Sbjct: 184 LAAALPGLRPQGL 196
>gi|148657090|ref|YP_001277295.1| alanine racemase [Roseiflexus sp. RS-1]
gi|148569200|gb|ABQ91345.1| alanine racemase [Roseiflexus sp. RS-1]
Length = 844
Score = 35.0 bits (80), Expect = 8.0, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMC 162
+ +PV+++V+TG ++G+ ++ F+ ++VEGL
Sbjct: 591 ETGVPVPVHVEVDTGM--ARTGLSVDELGPFLRSLAGLPGVHVEGLYT 636
>gi|255324500|ref|ZP_05365617.1| diaminopimelate decarboxylase [Corynebacterium tuberculostearicum
SK141]
gi|255298406|gb|EET77706.1| diaminopimelate decarboxylase [Corynebacterium tuberculostearicum
SK141]
Length = 445
Score = 35.0 bits (80), Expect = 8.1, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 14/77 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMP--NQTKDF 145
+ E L+ + + PV I+V T +E QK GI
Sbjct: 136 IDNELELEELNRIAGEAGKVQPVMIRVKPGVDAHTHEFIATAHEDQKFGISLATGAAFAA 195
Query: 146 VILCRQKYQLNVEGLMC 162
C + L++ GL C
Sbjct: 196 AKRCLEADNLHLSGLHC 212
>gi|291614600|ref|YP_003524757.1| alanine racemase [Sideroxydans lithotrophicus ES-1]
gi|291584712|gb|ADE12370.1| alanine racemase [Sideroxydans lithotrophicus ES-1]
Length = 353
Score = 35.0 bits (80), Expect = 8.1, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 11/131 (8%)
Query: 92 SLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQ 151
L VI + + ++L +++ L V++++NTG + G P Q + R+
Sbjct: 94 ELGSVIHS---TRQLAMLD-ACPRRN-SLEVWLKINTGM--NRLGFAPEQVPAAMEKLRK 146
Query: 152 KYQLNVEGLMCIPPAMGNPK---PHFYLLSEIARECKLTKLSMGMTRDFELAIASGATSV 208
+ LM P+ L + +L S+ + ++ + V
Sbjct: 147 HPAVRDITLMTHFSHADEPEGVAEQLELFKGLTAAYRLP-RSLANSAALLRYPSTHSEWV 205
Query: 209 RIGSGIFGERP 219
R G ++G P
Sbjct: 206 RPGIMLYGASP 216
>gi|197104100|ref|YP_002129477.1| diaminopimelate decarboxylase [Phenylobacterium zucineum HLK1]
gi|196477520|gb|ACG77048.1| diaminopimelate decarboxylase [Phenylobacterium zucineum HLK1]
Length = 422
Score = 35.0 bits (80), Expect = 8.1, Method: Composition-based stats.
Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 16/102 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E L+ + + I+VN TG K G+ ++ +
Sbjct: 127 VESEPELDLVDRVAQRLGVRAQIAIRVNPDVQAGGHEKISTGKSENKFGVSFSEAERLYA 186
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKP---HFYLLSEIARECK 185
+ G+ C I + + P F + + +
Sbjct: 187 KASNLAGVRPVGVACHIGSQITDLAPMAEAFAKMRGLVERLQ 228
>gi|311898369|dbj|BAJ30777.1| putative diaminopimelate decarboxylase [Kitasatospora setae
KM-6054]
Length = 463
Score = 35.0 bits (80), Expect = 8.2, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 22/123 (17%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQ------------VNTGYEIQKSGIMPNQ--TKDF 145
V + L+ Q PV I+ + T +E QK G+ + +
Sbjct: 160 VDSFQEIERLAAIADAQGVRQPVLIRITVGVEAHTHEFIATAHEDQKFGLSLSGGLAAEA 219
Query: 146 VILCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDF 197
V + L + G + + LL+E+ E + + +
Sbjct: 220 VRRVLARPSLELRGIHSHIGSQIFDFAGFEVAARRVVGLLAEVRDEHGVELPEIDLGGGL 279
Query: 198 ELA 200
+A
Sbjct: 280 GIA 282
>gi|323452098|gb|EGB07973.1| hypothetical protein AURANDRAFT_64579 [Aureococcus anophagefferens]
Length = 369
Score = 35.0 bits (80), Expect = 8.2, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 3/74 (4%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVE 158
V + L + S+ L VY++V+ G + G P D L
Sbjct: 98 VDDAAQVAALEQAVAGSSKTLDVYVEVDVGQ--NRCGTRPGAPAADLAATVVAADGLRFR 155
Query: 159 GLMCIPPAMGNPKP 172
G C + + +
Sbjct: 156 GAHCYHGLLQHVRK 169
>gi|311743945|ref|ZP_07717751.1| diaminopimelate decarboxylase [Aeromicrobium marinum DSM 15272]
gi|311313075|gb|EFQ82986.1| diaminopimelate decarboxylase [Aeromicrobium marinum DSM 15272]
Length = 469
Score = 35.0 bits (80), Expect = 8.2, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 43/155 (27%), Gaps = 35/155 (22%)
Query: 79 IGSLQSNKVSEIVSLFDVIET------VSREKTASLLSLEMIKQSRFLPVYIQV------ 126
IG L N + L +E V + L + V ++V
Sbjct: 132 IG-LHGNN-KSVAELRRALELGVGRIIVDSVEEIDRLVGLTEELGVTARVMVRVTAGVEA 189
Query: 127 ------NTGYEIQKSGIM-------PNQTKDFVILCRQKYQLNVEGL--------MCIPP 165
+T +E QK G P+ V L + GL
Sbjct: 190 HTHEYISTAHEDQKFGFSIHGREGRPSDALQAVRRIVAAPGLKLLGLHSHIGSQIFVTDG 249
Query: 166 AMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELA 200
+ L +EI RE +T + F +A
Sbjct: 250 FEVAARRVLRLQAEIERELGVTLPEFDLGGGFGIA 284
>gi|311740632|ref|ZP_07714459.1| diaminopimelate decarboxylase [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311304152|gb|EFQ80228.1| diaminopimelate decarboxylase [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 445
Score = 35.0 bits (80), Expect = 8.2, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 14/77 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMP--NQTKDF 145
+ E L+ + + PV I+V T +E QK GI
Sbjct: 136 IDNELELEELNRIAGEAGKVQPVMIRVKPGVDAHTHEFIATAHEDQKFGISLATGAAFAA 195
Query: 146 VILCRQKYQLNVEGLMC 162
C + L++ GL C
Sbjct: 196 AKRCLEADNLHLSGLHC 212
>gi|269128462|ref|YP_003301832.1| alanine racemase [Thermomonospora curvata DSM 43183]
gi|268313420|gb|ACY99794.1| alanine racemase [Thermomonospora curvata DSM 43183]
Length = 375
Score = 35.0 bits (80), Expect = 8.3, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 38/143 (26%), Gaps = 30/143 (20%)
Query: 106 ASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKY---QLNVEGLMC 162
A L+ + R V+++ +TG + G V L V G+M
Sbjct: 107 ARRLAEAAERAGRPARVHLKADTGM--SRGGATMADWPATVEAALAAQAAGHLRVVGVMS 164
Query: 163 IPPAMGNP-----KPHFYLLSEIAR-------ECKLTKLSMGMTRDFELAIASGATSVRI 210
P + E ++ LS L + VR
Sbjct: 165 HLACADEPGHPSIARQLAVFKEAVEYAEKAGVRPQVRHLS-NSAATLTLP-EARYDLVRP 222
Query: 211 GSGI-----------FGERPCQT 222
G I FG RP T
Sbjct: 223 GIAIYGLTPVPQMGTFGLRPAMT 245
>gi|239820838|ref|YP_002948023.1| alanine racemase domain protein [Variovorax paradoxus S110]
gi|239805691|gb|ACS22757.1| alanine racemase domain protein [Variovorax paradoxus S110]
Length = 384
Score = 35.0 bits (80), Expect = 8.4, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 23/134 (17%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ---LNV 157
+ A ++ V I+++T +SGI P + D ++ + + +
Sbjct: 116 DSVEGARAIADYGRAHGHAFEVLIEIDTDG--HRSGIKPGE--DLLLEVGRMLHEGGMRL 171
Query: 158 EGLMC-------------IPPAMGNPKPHFYLLSEIARECKL--TKLSMGMTRD-FELAI 201
G++ + + ++ R L +S+G T E A
Sbjct: 172 AGVLTHAGSSYELHTPQALAALAEQERAGCVQAAQRLRAAGLPCPIVSVGSTPTALEAAS 231
Query: 202 ASGATSVRIGSGIF 215
G T +R G +F
Sbjct: 232 LDGVTELRAGVYVF 245
>gi|297559297|ref|YP_003678271.1| diaminopimelate decarboxylase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296843745|gb|ADH65765.1| diaminopimelate decarboxylase [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 461
Score = 35.0 bits (80), Expect = 8.4, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 27/102 (26%), Gaps = 22/102 (21%)
Query: 79 IGSLQSNKVSEIVSLFDVIET------VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE- 131
IG + N L +E + L + V I+V TG E
Sbjct: 133 IG-MHGNN-KSAAELRRAVEAGVGRVIIDSLDEIERLGAIAAELGARPKVLIRVTTGVEA 190
Query: 132 -----------IQKSGIMPN--QTKDFVILCRQKYQLNVEGL 160
QK G + + V L + GL
Sbjct: 191 HTHEFVATAHDDQKFGFAMSTGAAAEAVRRVLAAPHLELVGL 232
>gi|75343523|sp|O82872|DTA_ARTSP RecName: Full=D-threonine aldolase
gi|3299792|dbj|BAA31547.1| metal-activated pyridoxal enzyme [Arthrobacter sp.]
Length = 379
Score = 35.0 bits (80), Expect = 8.5, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQ-TKDFVILCRQKYQLNVE 158
V S +S M++ + V ++V+ G + G+ + R +N
Sbjct: 125 VDNAHNLSQVSQAMVQAGAQIDVLVEVDVGQ--GRCGVSDDALVLALAQQARDLPGVNFA 182
Query: 159 GL 160
GL
Sbjct: 183 GL 184
>gi|313669199|ref|YP_004049483.1| diaminopimelate decarboxylase [Neisseria lactamica ST-640]
gi|313006661|emb|CBN88127.1| diaminopimelate decarboxylase [Neisseria lactamica 020-06]
Length = 406
Score = 35.0 bits (80), Expect = 8.6, Method: Composition-based stats.
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 12/74 (16%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVIL 148
+ + + V ++VN + K GI +
Sbjct: 117 ESIPEIDRIQKVAARLGKTASVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRH 176
Query: 149 CRQKYQLNVEGLMC 162
Q+ L + G+ C
Sbjct: 177 AAQQPNLKIIGIDC 190
>gi|262373159|ref|ZP_06066438.1| diaminopimelate decarboxylase [Acinetobacter junii SH205]
gi|262313184|gb|EEY94269.1| diaminopimelate decarboxylase [Acinetobacter junii SH205]
Length = 416
Score = 34.6 bits (79), Expect = 8.7, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 13/86 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + K + P+ ++VN + K GI + +
Sbjct: 123 VESYAELDRIQKVAAKLGKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDTVYETYQ 182
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKP 172
L + G+ C I + KP
Sbjct: 183 YAASLPNLEIVGIDCHIGSQLTETKP 208
>gi|304317133|ref|YP_003852278.1| alanine racemase domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778635|gb|ADL69194.1| alanine racemase domain protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 393
Score = 34.6 bits (79), Expect = 8.7, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 9/107 (8%)
Query: 73 DVQLRFIGSL-QSNKVSEIVSLFDV---IETVSREKTASLLSLEMIKQSRFLPVYIQVNT 128
+++ IG L Q K ++I++ + + T A+ LS K + ++V
Sbjct: 96 GLKIGHIGHLVQIPK-NDIMASLKMHPDVITCFSYDKAAELSDIAEKLGIRQNILLRVID 154
Query: 129 GYEI----QKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171
+ Q GI + + +++ G+ P + +
Sbjct: 155 DKDDIYPGQYGGIKLKDLRKIASNILRLKNIDIVGITSFPCFLYDYN 201
>gi|86139003|ref|ZP_01057574.1| diaminopimelate decarboxylase [Roseobacter sp. MED193]
gi|85824234|gb|EAQ44438.1| diaminopimelate decarboxylase [Roseobacter sp. MED193]
Length = 421
Score = 34.6 bits (79), Expect = 8.7, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E ++++ ++ + P+ I+VN TG K GI ++ ++
Sbjct: 124 VESEPEMAVINAVALELGQVAPITIRVNPDVDAKTHAKIATGKSENKFGIPISRAREVYA 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
L V G+ C I + +P +IA
Sbjct: 184 HAATLPGLKVIGVDCHIGSQLTELEPFRKAYEKIAE 219
>gi|328771863|gb|EGF81902.1| hypothetical protein BATDEDRAFT_19051 [Batrachochytrium
dendrobatidis JAM81]
Length = 503
Score = 34.6 bits (79), Expect = 8.7, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 15 ENSAILAKRPKDSVSLVAVSKMVDSKKIRVALS--CGQVIFAENKLQEAKKKWIPLRKEW 72
++ +AKR V + VSK + +I+ A Q NK AK+K++ ++ +
Sbjct: 74 ATASSMAKRNPYDV--IGVSKTSTANEIKKAYYQLAKQYHPDTNKDPSAKEKFVEIQHAY 131
Query: 73 DV 74
++
Sbjct: 132 EI 133
>gi|226307410|ref|YP_002767370.1| diaminopimelate decarboxylase [Rhodococcus erythropolis PR4]
gi|226186527|dbj|BAH34631.1| diaminopimelate decarboxylase [Rhodococcus erythropolis PR4]
Length = 473
Score = 34.6 bits (79), Expect = 8.7, Method: Composition-based stats.
Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 20/93 (21%)
Query: 88 SEIVSLFDVIET------VSREKTASLLSLEMIKQSRFLPVYIQ------------VNTG 129
+ L + + L + V I+ ++T
Sbjct: 143 KSVAELAAGVAAGVGHVVLDSAIEIDRLDRVAGEAGVVQDVLIRLTVGVEAHTHEFISTA 202
Query: 130 YEIQKSGIMPN--QTKDFVILCRQKYQLNVEGL 160
+E QK G D V L + GL
Sbjct: 203 HEDQKFGFSLAGGAAIDAVRRVFAADNLRLVGL 235
>gi|117620267|ref|YP_855006.1| diaminopimelate decarboxylase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117561674|gb|ABK38622.1| diaminopimelate decarboxylase [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 416
Score = 34.6 bits (79), Expect = 8.8, Method: Composition-based stats.
Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVI 147
+ E L+ + V ++VN + K GI Q
Sbjct: 125 LESEAELERLNRVAGGMGKKARVSVRVNPDIDAGTHPYISTGLKQNKFGIPIEQAPAIYR 184
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
+ + G+ C I + P ++ R
Sbjct: 185 KAAAMANIEIVGVDCHIGSQLTELNPFMEAADKLLR 220
>gi|41410356|ref|NP_963192.1| alanine racemase [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41399190|gb|AAS06808.1| Alr [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 391
Score = 34.6 bits (79), Expect = 8.8, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 50/136 (36%), Gaps = 19/136 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCR---QKYQLN 156
+S ++ L + R V ++V+T + ++G+ P Q + R + +
Sbjct: 113 LSSQRQLDELLTAVRDTGRTATVTVKVDT--RLNRNGVPPAQYPSMLTALRRAVAEEAIV 170
Query: 157 VEGLMC-IPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT--------- 206
GLM + A P + ++ + G+ FE+A S ++
Sbjct: 171 PRGLMSHMVYADQPANPVNDVQAQRFTDMLAQAREQGV--RFEVAHLSNSSATMSRPDLA 228
Query: 207 --SVRIGSGIFGERPC 220
VR G ++G P
Sbjct: 229 FDMVRPGIAVYGLSPV 244
>gi|115360046|ref|YP_777184.1| alanine racemase domain-containing protein [Burkholderia ambifaria
AMMD]
gi|115285334|gb|ABI90850.1| alanine racemase domain protein [Burkholderia ambifaria AMMD]
Length = 376
Score = 34.6 bits (79), Expect = 8.8, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 19/128 (14%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTK----------------D 144
+TA+ ++ + V+I+V+ +SGI P+
Sbjct: 108 DSLETANAIAEFGREHGERFDVWIEVDVDG--HRSGIRPDDALLIDVGRALVDGGMALGG 165
Query: 145 FVILCRQKYQLNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRD-FELAIAS 203
+ Y+ + G + + A +S+G T A
Sbjct: 166 VLAHAGSSYEYDTRGALVAIAEQERSRTVRAAERLRAAGLPCPVVSIGSTPTALSAANLD 225
Query: 204 GATSVRIG 211
G T VR G
Sbjct: 226 GVTEVRAG 233
>gi|295694996|ref|YP_003588234.1| Orn/DAP/Arg decarboxylase 2 [Bacillus tusciae DSM 2912]
gi|295410598|gb|ADG05090.1| Orn/DAP/Arg decarboxylase 2 [Bacillus tusciae DSM 2912]
Length = 477
Score = 34.6 bits (79), Expect = 8.9, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 21/72 (29%), Gaps = 10/72 (13%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNT----------GYEIQKSGIMPNQTKDFVIL 148
+ LS + +R + ++V+ KSGI + F
Sbjct: 141 STDSLSEIETLSTLGTRMARPADILLEVDPVLSFPNHRPPTPYYLKSGIDRHDLLSFAEQ 200
Query: 149 CRQKYQLNVEGL 160
+ + GL
Sbjct: 201 TLNYPGIRIRGL 212
>gi|294651118|ref|ZP_06728454.1| diaminopimelate decarboxylase [Acinetobacter haemolyticus ATCC
19194]
gi|292823012|gb|EFF81879.1| diaminopimelate decarboxylase [Acinetobacter haemolyticus ATCC
19194]
Length = 416
Score = 34.6 bits (79), Expect = 8.9, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 13/86 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + K + P+ ++VN + K GI +
Sbjct: 123 VESHAELDRIQKVAAKLGKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDAVDATYQ 182
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKP 172
L + G+ C I + KP
Sbjct: 183 YAASLSNLEIVGIDCHIGSQLTETKP 208
>gi|261378590|ref|ZP_05983163.1| diaminopimelate decarboxylase [Neisseria cinerea ATCC 14685]
gi|269144922|gb|EEZ71340.1| diaminopimelate decarboxylase [Neisseria cinerea ATCC 14685]
Length = 406
Score = 34.6 bits (79), Expect = 8.9, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 12/74 (16%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVIL 148
+ + S+ PV ++VN + K GI +
Sbjct: 117 ESIPEIDRIQKVAARLSKTAPVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRH 176
Query: 149 CRQKYQLNVEGLMC 162
Q+ L + G+ C
Sbjct: 177 AAQQPNLKIIGIDC 190
>gi|302038070|ref|YP_003798392.1| alanine racemase [Candidatus Nitrospira defluvii]
gi|300606134|emb|CBK42467.1| Alanine racemase [Candidatus Nitrospira defluvii]
Length = 387
Score = 34.6 bits (79), Expect = 8.9, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 10/103 (9%)
Query: 124 IQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGN-----PKPHFYLLS 178
+ V + + G+ P + D + + L +EGLM N +
Sbjct: 128 VHVKIETGMGRLGVHPPEMPDLAAMPAFRATLRLEGLMTHLADADNTKTTHTETQLTEFQ 187
Query: 179 EIARECKLTKLSMGMTRDFELA--IASGA---TSVRIGSGIFG 216
+ + LS + A I A T VR G ++G
Sbjct: 188 QTLDTLRQGGLSCPLIHAANSAGIIQYPASLYTLVRPGIMLYG 230
>gi|300717006|ref|YP_003741809.1| alanine racemase, catabolic [Erwinia billingiae Eb661]
gi|299062842|emb|CAX59962.1| Alanine racemase, catabolic [Erwinia billingiae Eb661]
Length = 356
Score = 34.6 bits (79), Expect = 8.9, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 8/134 (5%)
Query: 89 EIVSLFDVIETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVIL 148
I+ + + +V L+ K S L +Y++VN+G + G P Q +
Sbjct: 89 AILDQYRLTTSVHSNWQIQALAK--AKLSAPLDIYLKVNSGM--NRLGFAPEQVQQAWNK 144
Query: 149 CRQKYQLNVEGLMCI---PPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA 205
R + LM + + + A +
Sbjct: 145 LRGLENVGEMTLMAHFAEAETSEGIEQPLRRIEQAAEGLDCLRSLANSAATLWHPHTHH- 203
Query: 206 TSVRIGSGIFGERP 219
VR G ++G P
Sbjct: 204 DWVRPGIILYGASP 217
>gi|186685683|ref|YP_001868879.1| alanine racemase [Nostoc punctiforme PCC 73102]
gi|186468135|gb|ACC83936.1| alanine racemase [Nostoc punctiforme PCC 73102]
Length = 395
Score = 34.6 bits (79), Expect = 8.9, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 16/135 (11%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE 158
T+ K A + S + + PV + + + + G Q +FV L ++ L++
Sbjct: 123 TLCSPKQALVFSNILESMNHGSPVPVHIKLDTGMSRLGTNWQQAGEFVQLVQRLPHLSIA 182
Query: 159 GLMCIPPAMGNP-----KPHFYLLSEIARECKLTKLSMGMTRDFELAIASGA-------- 205
+ +P + E + K ++ LA ++ A
Sbjct: 183 SIYSHLATADDPDTTAMEEQHRRFEEAIAQIKAMEIEAPC---LHLANSAAALTDPALHY 239
Query: 206 TSVRIGSGIFGERPC 220
VR+G ++G P
Sbjct: 240 DIVRVGLAVYGLYPA 254
>gi|296314185|ref|ZP_06864126.1| diaminopimelate decarboxylase [Neisseria polysaccharea ATCC 43768]
gi|296839164|gb|EFH23102.1| diaminopimelate decarboxylase [Neisseria polysaccharea ATCC 43768]
Length = 406
Score = 34.6 bits (79), Expect = 9.0, Method: Composition-based stats.
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 12/74 (16%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVIL 148
+ + + V ++VN + K GI +
Sbjct: 117 ESIPEIDRIQKVAARLGKTASVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRH 176
Query: 149 CRQKYQLNVEGLMC 162
Q+ L + G+ C
Sbjct: 177 AAQQPNLKIIGIDC 190
>gi|170781871|ref|YP_001710203.1| diaminopimelate decarboxylase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169156439|emb|CAQ01587.1| diaminopimelate decarboxylase [Clavibacter michiganensis subsp.
sepedonicus]
Length = 499
Score = 34.6 bits (79), Expect = 9.0, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 12/73 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V ++ R PV ++VN T E QK GI V
Sbjct: 156 VDSRVEVERIAAAAAAHGRVQPVRLRVNSGVHAHTHEYLATAREDQKFGITLQDAPGVVA 215
Query: 148 LCRQKYQLNVEGL 160
R L+ GL
Sbjct: 216 RIRSHASLSFTGL 228
>gi|293609896|ref|ZP_06692198.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828348|gb|EFF86711.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 416
Score = 34.6 bits (79), Expect = 9.1, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 13/86 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + + P+ ++VN + K GI + +
Sbjct: 123 VESYAELDRLQKVAARIGKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDTVYETYQ 182
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKP 172
L + G+ C I + KP
Sbjct: 183 YAASLPNLEIIGIDCHIGSQLTETKP 208
>gi|300856974|ref|YP_003781958.1| diaminopimelate decarboxylase [Clostridium ljungdahlii DSM 13528]
gi|300437089|gb|ADK16856.1| diaminopimelate decarboxylase [Clostridium ljungdahlii DSM 13528]
Length = 428
Score = 34.6 bits (79), Expect = 9.2, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 22/120 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQV------------NTGYEIQKSGIMP--NQTKDF 145
V ++ K + + ++V TG K G N+ +
Sbjct: 125 VDNFYEMEKINSAAKKYGKIQEILLRVTPGIEAHTHDYIKTGQIDSKFGFTMLNNEVMNI 184
Query: 146 VILCRQKYQLNVEGLMC-IP-------PAMGNPKPHFYLLSEIARECKLTKLSMGMTRDF 197
+ L G+ C I P + L+ +I E + + F
Sbjct: 185 IKSAVDFPNLKFVGIHCHIGSQIFETKPYEDEVEIMLNLVKKIKDELGREVEELDLGGGF 244
>gi|269129052|ref|YP_003302422.1| Orn/DAP/Arg decarboxylase 2 [Thermomonospora curvata DSM 43183]
gi|268314010|gb|ACZ00385.1| Orn/DAP/Arg decarboxylase 2 [Thermomonospora curvata DSM 43183]
Length = 373
Score = 34.6 bits (79), Expect = 9.2, Method: Composition-based stats.
Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 17/110 (15%)
Query: 60 EAKKKWIPLRKEWDVQLRFIGSLQSNK-VSEIVSLFDVIETVSREKTASLLSLEMIKQSR 118
E K L K +L F G ++++ ++ V + + V S L+ R
Sbjct: 70 ELKHVRAVLPK---ARLAFGGPGKTDEELALAVREAERVH-VESPHELSRLAR----IGR 121
Query: 119 FLPVYIQVNTGYE--------IQKSGIMPNQTKDFVILCRQKYQLNVEGL 160
+ V ++VN E G+ P + + + + G+
Sbjct: 122 DVDVLLRVNLAGERKGVALAMSGPFGMDPEAIEACHEILAGAPWVRLRGI 171
>gi|226952075|ref|ZP_03822539.1| diaminopimelate decarboxylase [Acinetobacter sp. ATCC 27244]
gi|226837167|gb|EEH69550.1| diaminopimelate decarboxylase [Acinetobacter sp. ATCC 27244]
Length = 407
Score = 34.6 bits (79), Expect = 9.2, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 13/86 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V + K + P+ ++VN + K GI +
Sbjct: 114 VESHAELDRIQKVAAKLGKKAPISLRVNPDVDAKTHPYISTGLKENKFGIPSDAVDATYQ 173
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKP 172
L + G+ C I + KP
Sbjct: 174 YAASLSNLEIVGIDCHIGSQLTETKP 199
>gi|309378898|emb|CBX22485.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 406
Score = 34.6 bits (79), Expect = 9.3, Method: Composition-based stats.
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 12/74 (16%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVIL 148
+ + + V ++VN + K GI +
Sbjct: 117 ESIPEIDRIQKVAARLGKTASVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRH 176
Query: 149 CRQKYQLNVEGLMC 162
Q+ L + G+ C
Sbjct: 177 AAQQPNLKIIGIDC 190
>gi|298489348|ref|ZP_07007362.1| Diaminopimelate decarboxylase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298156139|gb|EFH97245.1| Diaminopimelate decarboxylase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 415
Score = 34.6 bits (79), Expect = 9.3, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 13/96 (13%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + P+ ++VN + K GI +D I
Sbjct: 124 VESTDELERLQEVAAELDVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIANAEDVYI 183
Query: 148 LCRQKYQLNVEGLMC-IPPAMGNPKPHFYLLSEIAR 182
Q L V G+ C I + +P L +
Sbjct: 184 RASQLPNLEVIGVDCHIGSQLTTLEPFIDALDRLLD 219
>gi|121602458|ref|YP_988394.1| diaminopimelate decarboxylase [Bartonella bacilliformis KC583]
gi|120614635|gb|ABM45236.1| diaminopimelate decarboxylase [Bartonella bacilliformis KC583]
Length = 424
Score = 34.6 bits (79), Expect = 9.3, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 16/101 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V E LS + S+ + +++N + K GI +
Sbjct: 124 VESEPELEQLSARAVALSKTARISLRINPDVDAKTHKKITTGRFDNKFGIPLSLACSAYK 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIAREC 184
Q L V G+ M I + + KP F + ++ R
Sbjct: 184 KAAQLPGLQVRGMDMHIGSQICDLKPFEDAFLIAADFVRHL 224
>gi|325135569|gb|EGC58187.1| diaminopimelate decarboxylase [Neisseria meningitidis M0579]
gi|325201385|gb|ADY96839.1| diaminopimelate decarboxylase [Neisseria meningitidis M01-240149]
gi|325207366|gb|ADZ02818.1| diaminopimelate decarboxylase [Neisseria meningitidis NZ-05/33]
Length = 414
Score = 34.6 bits (79), Expect = 9.3, Method: Composition-based stats.
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 12/74 (16%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVIL 148
+ + + V ++VN + K GI +
Sbjct: 117 ESIPEIDRIQKVAARLGKTASVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRH 176
Query: 149 CRQKYQLNVEGLMC 162
Q+ L + G+ C
Sbjct: 177 AAQQPNLKIIGIDC 190
>gi|304311839|ref|YP_003811437.1| Type II secretory pathway protein [gamma proteobacterium HdN1]
gi|301797572|emb|CBL45792.1| Type II secretory pathway protein [gamma proteobacterium HdN1]
Length = 586
Score = 34.6 bits (79), Expect = 9.3, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 16/112 (14%)
Query: 96 VIETVSREKTASLLSLEMIKQSR-FLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQ 154
++ +V A L+ ++ K + V ++V G+ P + C Q Y
Sbjct: 463 LVSSVLLGVLAQRLTRKICKHCKTPQDVDVEVRELM-----GVAPEEVFYAGKGCDQCYG 517
Query: 155 LNVEGLMCIPPAMGNPKPHFYLLSEIARECKLTKLSMGMTRDFELAIASGAT 206
V+G M + M + + I++ ++ +E+A+ G T
Sbjct: 518 TGVKGRMAVYELMTLSR---GIRDAISKHASADEV-------YEVAVREGMT 559
>gi|254804203|ref|YP_003082424.1| Diaminopimelate decarboxylase [Neisseria meningitidis alpha14]
gi|254667745|emb|CBA03656.1| Diaminopimelate decarboxylase [Neisseria meningitidis alpha14]
Length = 406
Score = 34.6 bits (79), Expect = 9.3, Method: Composition-based stats.
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 12/74 (16%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVIL 148
+ + + V ++VN + K GI +
Sbjct: 117 ESIPEIDRIQKVAARLGKTASVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRH 176
Query: 149 CRQKYQLNVEGLMC 162
Q+ L + G+ C
Sbjct: 177 AAQQPNLKIIGIDC 190
>gi|152988246|ref|YP_001350769.1| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
pyrophosphokinase [Pseudomonas aeruginosa PA7]
gi|150963404|gb|ABR85429.1| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
pyrophosphokinase [Pseudomonas aeruginosa PA7]
Length = 162
Score = 34.6 bits (79), Expect = 9.3, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 2 SLGNKLQVFKQKIENSAILAKRPKDSVSLVAVS 34
+LG+ L +++I+ + R DS LVAVS
Sbjct: 8 ALGSNLAQPREQIQAALEALARLPDS-RLVAVS 39
>gi|218767449|ref|YP_002341961.1| diaminopimelate decarboxylase [Neisseria meningitidis Z2491]
gi|13124075|sp|Q9JWA6|DCDA_NEIMA RecName: Full=Diaminopimelate decarboxylase; Short=DAP
decarboxylase
gi|121051457|emb|CAM07750.1| diaminopimelate decarboxylase [Neisseria meningitidis Z2491]
Length = 406
Score = 34.6 bits (79), Expect = 9.3, Method: Composition-based stats.
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 12/74 (16%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVIL 148
+ + + V ++VN + K GI +
Sbjct: 117 ESIPEIDRIQKVAARLGKTASVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRH 176
Query: 149 CRQKYQLNVEGLMC 162
Q+ L + G+ C
Sbjct: 177 AAQQPNLKIIGIDC 190
>gi|319789312|ref|YP_004150945.1| alanine racemase [Thermovibrio ammonificans HB-1]
gi|317113814|gb|ADU96304.1| alanine racemase [Thermovibrio ammonificans HB-1]
Length = 357
Score = 34.6 bits (79), Expect = 9.4, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 17/116 (14%)
Query: 115 KQSRFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPKPHF 174
++++ L V V + + G +P+Q ++ + R + G+M P+ + P F
Sbjct: 107 ERAKELEVPFHVKLDTGMGRLGFLPSQWQELLCSLRGA---KLAGVMTHFPS-ADEDPEF 162
Query: 175 -----YLLSEIARECK--LTKLSMGMTRDFELAIASGA----TSVRIGSGIFGERP 219
L E + K KL + A+ G T R+G ++G +P
Sbjct: 163 TAGQAKLFGEFVKALKGAFPKLWVHCDN--SAALPLGLNGLFTHSRVGLALYGSKP 216
>gi|312963815|ref|ZP_07778286.1| Diaminopimelate decarboxylase [Pseudomonas fluorescens WH6]
gi|311281850|gb|EFQ60460.1| Diaminopimelate decarboxylase [Pseudomonas fluorescens WH6]
Length = 415
Score = 34.6 bits (79), Expect = 9.4, Method: Composition-based stats.
Identities = 17/103 (16%), Positives = 28/103 (27%), Gaps = 20/103 (19%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
+ L + + P+ ++VN + K GI +D I
Sbjct: 124 IESTDELERLQVVAAEMGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYI 183
Query: 148 LCRQKYQLNVEG--------LMCIPPAMGNPKPHFYLLSEIAR 182
Q L V G L +PP + L +
Sbjct: 184 RAAQLPNLEVLGVDCHIGSQLTTLPPFIDALDRLLALTDRLGD 226
>gi|77461719|ref|YP_351226.1| diaminopimelate decarboxylase [Pseudomonas fluorescens Pf0-1]
gi|77385722|gb|ABA77235.1| diaminopimelate decarboxylase [Pseudomonas fluorescens Pf0-1]
Length = 415
Score = 34.6 bits (79), Expect = 9.4, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 12/75 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKDFVI 147
V L + + P+ ++VN + K GI +D +
Sbjct: 124 VESTDELERLQVVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAEDVYV 183
Query: 148 LCRQKYQLNVEGLMC 162
L V G+ C
Sbjct: 184 RAAHLPNLEVVGVDC 198
>gi|145628393|ref|ZP_01784194.1| diaminopimelate decarboxylase [Haemophilus influenzae 22.1-21]
gi|144980168|gb|EDJ89827.1| diaminopimelate decarboxylase [Haemophilus influenzae 22.1-21]
Length = 205
Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 15/72 (20%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVNTGYE------------IQKSGIMPNQTKD 144
+E+VS K ++ + + P+ ++VN + K G+ N+ ++
Sbjct: 124 VESVSELKH---INQIAGEMGKIAPISLRVNPDVDAHTHPYISTGLKENKFGVSVNEARE 180
Query: 145 FVILCRQKYQLN 156
L +
Sbjct: 181 VYKLASTLPNIK 192
>gi|88855309|ref|ZP_01129973.1| diaminopimelate decarboxylase [marine actinobacterium PHSC20C1]
gi|88815216|gb|EAR25074.1| diaminopimelate decarboxylase [marine actinobacterium PHSC20C1]
Length = 467
Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 12/73 (16%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
+ ++ + R V +++N T E QK GI + + V
Sbjct: 156 IDSVVEIGRVADAATRHGRTQRVRLRINSGVHASTHEYLATAREDQKFGIPLAEAESVVA 215
Query: 148 LCRQKYQLNVEGL 160
R L+ G+
Sbjct: 216 QIRSHGSLDFVGI 228
>gi|254670860|emb|CBA07331.1| Diaminopimelate decarboxylase [Neisseria meningitidis alpha153]
Length = 406
Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats.
Identities = 10/74 (13%), Positives = 20/74 (27%), Gaps = 12/74 (16%)
Query: 101 SREKTASLLSLEMIKQSRFLPVYIQVNTGYEI------------QKSGIMPNQTKDFVIL 148
+ + + V ++VN + K GI +
Sbjct: 117 ESIPEIDRIQKVAERLGKTASVSLRVNPDVDAKTHPYISTGLKANKFGIAYADALEAYRH 176
Query: 149 CRQKYQLNVEGLMC 162
Q+ L + G+ C
Sbjct: 177 AAQQPNLKIIGIDC 190
>gi|240851353|ref|YP_002972756.1| diaminopimelate decarboxylase [Bartonella grahamii as4aup]
gi|240268476|gb|ACS52064.1| diaminopimelate decarboxylase [Bartonella grahamii as4aup]
Length = 424
Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 16/101 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E LS + S+ V +++N TG K GI ++
Sbjct: 124 VESEPELEQLSQRAVALSKIARVSLRINPDVDAKTHKKITTGKSENKFGIPLLLAREAYK 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIAREC 184
L V G+ M I + + KP F+L+++ R+
Sbjct: 184 KADSLPGLQVCGIDMHIGSQICDLKPFEEAFFLIADCVRQL 224
>gi|269957729|ref|YP_003327518.1| alanine racemase domain-containing protein [Xylanimonas
cellulosilytica DSM 15894]
gi|269306410|gb|ACZ31960.1| alanine racemase domain protein [Xylanimonas cellulosilytica DSM
15894]
Length = 400
Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats.
Identities = 12/107 (11%), Positives = 28/107 (26%), Gaps = 18/107 (16%)
Query: 96 VIETVSREKTASL--LSLEMIKQSRFLPVYIQVNTGYEIQKSGI------------MPNQ 141
+++ V++ + V + V+ ++ + P+
Sbjct: 117 MVDDVAQLALVERALDDAGADPAGPPVQVCLDVDASLRLRLGPLTLHVGTRRSPLHAPDD 176
Query: 142 TKDFVILCRQKYQLNVEGLMC----IPPAMGNPKPHFYLLSEIAREC 184
L++ GLM I + + ARE
Sbjct: 177 VARLAARVATTPGLHLRGLMTYEAQIAGLPDDSVAVRAMKRVSAREL 223
>gi|163869282|ref|YP_001610538.1| hypothetical protein Btr_2591 [Bartonella tribocorum CIP 105476]
gi|161018985|emb|CAK02543.1| Diaminopimelate decarboxylase [Bartonella tribocorum CIP 105476]
Length = 424
Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 16/101 (15%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQVN------------TGYEIQKSGIMPNQTKDFVI 147
V E LS + S+ V +++N TG K GI ++
Sbjct: 124 VESEPELEQLSQRAVALSKTARVSLRINPDVDAKTHKKITTGKSENKFGIPLFLAREAYK 183
Query: 148 LCRQKYQLNVEGL-MCIPPAMGNPKP---HFYLLSEIAREC 184
L V G+ M I + + KP F L+++ R+
Sbjct: 184 KAASLPGLQVCGIDMHIGSQICDLKPFEEAFLLIADCVRQL 224
>gi|148243246|ref|YP_001228403.1| alanine racemase [Synechococcus sp. RCC307]
gi|147851556|emb|CAK29050.1| Alanine racemase [Synechococcus sp. RCC307]
Length = 395
Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats.
Identities = 42/234 (17%), Positives = 82/234 (35%), Gaps = 29/234 (12%)
Query: 7 LQVFKQKIE-NSAILAKRPKDSVSLVAVSK----MVDSKKIRVA-LSCGQVIFAENKLQE 60
L++ + I N+A L +L+AV K + + A L G F +
Sbjct: 25 LEIDRDAIRYNTAQLKGSLSPGCALMAVVKADGYGHGAVTVAEAALDGGASSFG---VAT 81
Query: 61 AKKKWIPLRKEWDVQLRFIGSLQSNKVSEIVSLFDVIETVSREKTASLLSLEMIKQSRFL 120
+ + + + +G+LQ + + + T+S + + S + + L
Sbjct: 82 LAEGIELRQAGIEAPILVLGNLQQPEEFRCCLHWQLSPTISSLRQGLIGSNVGVAGGKPL 141
Query: 121 PVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNP---------- 170
+++++TG + GI Q + +Q L++ G+ NP
Sbjct: 142 LAHLKLDTGM--ARLGIDWQQGPKLLEELQQLDGLSIAGVYSHLADADNPDGLLNATQQE 199
Query: 171 --KPHFYLLSEIARECKLTKL--SMGMTRDFELAIASGATSVRIGSGIFGERPC 220
+ E+ + L L S G EL VR+G ++G P
Sbjct: 200 RFEAVLRRFHELELKPGLRHLANSAGTLSSPEL----HYDMVRVGLSLYGHSPA 249
>gi|118467936|ref|YP_889210.1| diaminopimelate decarboxylase [Mycobacterium smegmatis str. MC2
155]
gi|13124107|sp|Q9X5M1|DCDA_MYCS2 RecName: Full=Diaminopimelate decarboxylase; Short=DAP
decarboxylase
gi|4894689|gb|AAD32591.1|AF126720_2 meso-diaminopimelate decarboxylase [Mycobacterium smegmatis str.
MC2 155]
gi|118169223|gb|ABK70119.1| diaminopimelate decarboxylase [Mycobacterium smegmatis str. MC2
155]
Length = 474
Score = 34.6 bits (79), Expect = 9.6, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 25/93 (26%), Gaps = 20/93 (21%)
Query: 88 SEIVSLFDVIET------VSREKTASLLSLEMIKQSRFLPVYIQV------------NTG 129
+ L ++ + E L V ++V +T
Sbjct: 143 KSVAELTAAVQAGVGHVVLDSEIEIERLDQIAGAAGVVQDVLVRVTVGVEAHTHEFISTA 202
Query: 130 YEIQKSGIMPN--QTKDFVILCRQKYQLNVEGL 160
+E QK G+ + + L + GL
Sbjct: 203 HEDQKFGLSLATGAAMNAIRRVFATDNLRLVGL 235
>gi|294815814|ref|ZP_06774457.1| Diaminopimelate decarboxylase [Streptomyces clavuligerus ATCC
27064]
gi|294328413|gb|EFG10056.1| Diaminopimelate decarboxylase [Streptomyces clavuligerus ATCC
27064]
Length = 454
Score = 34.6 bits (79), Expect = 9.7, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 23/123 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQV------------NTGYEIQKSGIMPN--QTKDF 145
+ E + L+ + ++ V ++V TG E QK G+ ++
Sbjct: 152 IDSEGEIARLAAQ-VQGPEPQQVMVRVLPGIEAGGHRKIRTGGEGQKFGLSLANGDAEEA 210
Query: 146 VILCRQKYQLNVEGLMC-IPPAMGNPKPHFY-------LLSEIARECKLTKLSMGMTRDF 197
V + L + GL C + + +P+P+ LL+ + +T + + F
Sbjct: 211 VARVLGQPGLELVGLHCHLGSQIASPEPYARAVRRLVALLARLRDRHGITLPELDLGGGF 270
Query: 198 ELA 200
+A
Sbjct: 271 AVA 273
>gi|254389440|ref|ZP_05004667.1| diaminopimelate decarboxylase [Streptomyces clavuligerus ATCC
27064]
gi|326444158|ref|ZP_08218892.1| diaminopimelate decarboxylase [Streptomyces clavuligerus ATCC
27064]
gi|197703154|gb|EDY48966.1| diaminopimelate decarboxylase [Streptomyces clavuligerus ATCC
27064]
Length = 446
Score = 34.6 bits (79), Expect = 9.7, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 23/123 (18%)
Query: 100 VSREKTASLLSLEMIKQSRFLPVYIQV------------NTGYEIQKSGIMPN--QTKDF 145
+ E + L+ + ++ V ++V TG E QK G+ ++
Sbjct: 144 IDSEGEIARLAAQ-VQGPEPQQVMVRVLPGIEAGGHRKIRTGGEGQKFGLSLANGDAEEA 202
Query: 146 VILCRQKYQLNVEGLMC-IPPAMGNPKPHFY-------LLSEIARECKLTKLSMGMTRDF 197
V + L + GL C + + +P+P+ LL+ + +T + + F
Sbjct: 203 VARVLGQPGLELVGLHCHLGSQIASPEPYARAVRRLVALLARLRDRHGITLPELDLGGGF 262
Query: 198 ELA 200
+A
Sbjct: 263 AVA 265
>gi|260466737|ref|ZP_05812923.1| alanine racemase [Mesorhizobium opportunistum WSM2075]
gi|259029467|gb|EEW30757.1| alanine racemase [Mesorhizobium opportunistum WSM2075]
Length = 379
Score = 34.6 bits (79), Expect = 9.9, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 45/130 (34%), Gaps = 25/130 (19%)
Query: 106 ASLLSLEMIKQS--RFLPVYIQVNTGYEIQKSGIMPNQTKDFVILCRQKYQLNVE----G 159
A L + R LP IQV++G + G+ P + + V ++V
Sbjct: 124 AQLKAWRAAAHGAGRQLPAAIQVDSGM--SRLGMAPAEVEAVVEDTGAFEGIDVRYVTSH 181
Query: 160 LMCIP----PAMGNPKPHFYLLSEIARECKLTKLS-----MGMTRDFELAIASGATSVRI 210
L C PA + F L + + + +G ++LA R
Sbjct: 182 LACADEPRHPANEQQRLAFERLRALLPAAPASLANSSGIFLGPRYHYDLA--------RP 233
Query: 211 GSGIFGERPC 220
G+ ++G P
Sbjct: 234 GAALYGINPT 243
>gi|240140165|ref|YP_002964642.1| putative ornithine/diaminopimelate PLP-dependent decarboxylase
[Methylobacterium extorquens AM1]
gi|240010139|gb|ACS41365.1| putative ornithine/diaminopimelate PLP-dependent decarboxylase
[Methylobacterium extorquens AM1]
Length = 429
Score = 34.6 bits (79), Expect = 9.9, Method: Composition-based stats.
Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 12/83 (14%)
Query: 97 IETVSREKTASLLSLEMIKQSRFLPVYIQVN-----------TGYEIQKSGIMPNQTKDF 145
I +RE+ ++ + + V +++N G + G +
Sbjct: 134 IHLENREEIV-RVAAAAERHGVHVRVALRINPGATAQGGAMRMGGKPSPFGFDEEDIEAA 192
Query: 146 VILCRQKYQLNVEGLMCIPPAMG 168
+ + +L + GL G
Sbjct: 193 IDTAEAEPRLRLVGLHLFAGTQG 215
>gi|326781367|ref|ZP_08240632.1| alanine racemase domain protein [Streptomyces cf. griseus
XylebKG-1]
gi|326661700|gb|EGE46546.1| alanine racemase domain protein [Streptomyces cf. griseus
XylebKG-1]
Length = 387
Score = 34.6 bits (79), Expect = 10.0, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 44/140 (31%), Gaps = 19/140 (13%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGY----EIQKSGIMPNQTKDFVILCRQKYQ 154
TV A +S +Q V I++ Q+ G+ + F
Sbjct: 124 TVFDLANARAVSDAAREQGFVQDVLIRLEGAEGTVYPGQEGGVPLERLDVFAEAAEALGG 183
Query: 155 LNVEGLMCIPPAMGNPK-------PHFYL---LSEI-----ARECKLTKLSMGMTRDFEL 199
+ + G+ P + +P+ F L E+ ++ +L+ S L
Sbjct: 184 IRIAGVTAFPCVLCDPESGRPAATATFDLALKARELLAARGHQDLRLSAPSATSMASLPL 243
Query: 200 AIASGATSVRIGSGIFGERP 219
GAT G + G P
Sbjct: 244 LAERGATHGEPGHALTGTTP 263
>gi|182440693|ref|YP_001828412.1| putative alanine racemase [Streptomyces griseus subsp. griseus NBRC
13350]
gi|178469209|dbj|BAG23729.1| putative alanine racemase [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 389
Score = 34.6 bits (79), Expect = 10.0, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 44/140 (31%), Gaps = 19/140 (13%)
Query: 99 TVSREKTASLLSLEMIKQSRFLPVYIQVNTGY----EIQKSGIMPNQTKDFVILCRQKYQ 154
TV A +S +Q V I++ Q+ G+ + F
Sbjct: 126 TVFDLANARAVSDAAREQGFVQDVLIRLEGAEGTVYPGQEGGVPLERLDVFAEAAEALGG 185
Query: 155 LNVEGLMCIPPAMGNPK-------PHFYL---LSEI-----ARECKLTKLSMGMTRDFEL 199
+ + G+ P + +P+ F L E+ ++ +L+ S L
Sbjct: 186 IRIAGVTAFPCVLCDPESGRPAATATFDLALKARELLAARGHQDLRLSAPSATSMASLPL 245
Query: 200 AIASGATSVRIGSGIFGERP 219
GAT G + G P
Sbjct: 246 LAERGATHGEPGHALTGTTP 265
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.315 0.179 0.591
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,918,489,533
Number of Sequences: 14124377
Number of extensions: 250898605
Number of successful extensions: 699251
Number of sequences better than 10.0: 4060
Number of HSP's better than 10.0 without gapping: 4708
Number of HSP's successfully gapped in prelim test: 1734
Number of HSP's that attempted gapping in prelim test: 682675
Number of HSP's gapped (non-prelim): 6808
length of query: 222
length of database: 4,842,793,630
effective HSP length: 134
effective length of query: 88
effective length of database: 2,950,127,112
effective search space: 259611185856
effective search space used: 259611185856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 79 (34.6 bits)